Query 006835
Match_columns 629
No_of_seqs 306 out of 1519
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 15:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02171 endoglucanase 100.0 4E-148 9E-153 1238.4 62.3 621 1-629 1-629 (629)
2 PLN02340 endoglucanase 100.0 2E-142 4E-147 1190.2 53.4 584 16-626 24-613 (614)
3 PLN02420 endoglucanase 100.0 3E-125 7E-130 1035.2 48.6 473 18-490 37-511 (525)
4 PLN00119 endoglucanase 100.0 2E-123 4E-128 1013.9 48.1 467 14-486 23-489 (489)
5 PLN02266 endoglucanase 100.0 2E-122 5E-127 1009.7 47.6 467 17-491 41-509 (510)
6 PLN02613 endoglucanase 100.0 8E-122 2E-126 1004.6 48.4 478 1-491 1-484 (498)
7 PLN02909 Endoglucanase 100.0 2E-121 4E-126 997.9 48.3 456 17-487 29-485 (486)
8 PLN02308 endoglucanase 100.0 3E-121 7E-126 999.9 47.2 472 8-487 14-487 (492)
9 PLN02175 endoglucanase 100.0 3E-121 6E-126 994.3 46.2 473 5-489 7-482 (484)
10 PLN02345 endoglucanase 100.0 7E-119 1E-123 976.5 45.6 454 26-487 1-460 (469)
11 PLN03009 cellulase 100.0 1E-118 2E-123 984.5 47.5 467 17-490 23-493 (495)
12 PF00759 Glyco_hydro_9: Glycos 100.0 4E-103 8E-108 865.4 32.6 435 22-483 1-444 (444)
13 PF09478 CBM49: Carbohydrate b 99.7 9E-17 1.9E-21 135.9 9.9 79 537-615 1-80 (80)
14 PF00553 CBM_2: Cellulose bind 99.5 4.2E-14 9E-19 125.0 8.4 88 537-628 1-96 (101)
15 smart00637 CBD_II CBD_II domai 99.1 4.4E-10 9.5E-15 97.6 8.8 70 544-617 1-79 (92)
16 COG5297 CelA Cellobiohydrolase 98.8 1.3E-08 2.7E-13 105.5 8.2 82 528-615 456-543 (544)
17 cd00249 AGE AGE domain; N-acyl 97.2 0.013 2.8E-07 63.5 17.2 147 75-256 47-200 (384)
18 PF06483 ChiC: Chitinase C; I 96.4 0.034 7.3E-07 53.5 10.6 93 529-624 29-153 (180)
19 KOG2787 Lanthionine synthetase 95.2 0.2 4.4E-06 52.4 11.3 112 108-257 241-354 (403)
20 COG1331 Highly conserved prote 94.6 0.095 2.1E-06 60.1 7.9 86 167-258 410-497 (667)
21 cd00249 AGE AGE domain; N-acyl 94.0 0.5 1.1E-05 51.1 12.0 118 114-256 16-142 (384)
22 PF07944 DUF1680: Putative gly 93.7 0.47 1E-05 54.1 11.3 126 107-258 78-204 (520)
23 PF03663 Glyco_hydro_76: Glyco 93.3 0.99 2.1E-05 49.2 12.6 126 105-257 109-249 (370)
24 PF07221 GlcNAc_2-epim: N-acyl 89.2 1.5 3.2E-05 47.1 8.6 120 106-256 37-166 (346)
25 PF03663 Glyco_hydro_76: Glyco 87.0 3.3 7E-05 45.2 9.6 29 229-257 85-121 (370)
26 PF01299 Lamp: Lysosome-associ 86.7 11 0.00023 40.1 13.1 24 605-628 172-195 (306)
27 cd02892 SQCY_1 Squalene cyclas 82.8 43 0.00093 39.3 16.9 159 21-211 325-490 (634)
28 TIGR03463 osq_cycl 2,3-oxidosq 82.2 52 0.0011 38.7 17.1 90 112-210 400-490 (634)
29 COG3533 Uncharacterized protei 81.9 15 0.00033 41.2 11.6 122 106-258 83-207 (589)
30 cd04791 LanC_SerThrkinase Lant 75.9 41 0.00089 35.2 12.8 24 233-256 143-166 (321)
31 PF10633 NPCBM_assoc: NPCBM-as 74.9 10 0.00022 31.4 6.3 55 555-617 7-61 (78)
32 COG2942 N-acyl-D-glucosamine 2 74.7 52 0.0011 36.0 13.0 124 107-257 73-202 (388)
33 COG3889 Predicted solute bindi 69.1 2.6 5.6E-05 49.1 1.7 32 369-400 645-680 (872)
34 PRK09752 adhesin; Provisional 66.9 4.5 9.7E-05 49.6 3.2 15 446-460 893-907 (1250)
35 PF15324 TALPID3: Hedgehog sig 66.3 6.7 0.00014 47.2 4.3 17 495-511 944-960 (1252)
36 PF05750 Rubella_Capsid: Rubel 65.4 5.4 0.00012 38.6 2.8 25 546-570 158-183 (300)
37 PF07462 MSP1_C: Merozoite sur 64.3 9.1 0.0002 43.1 4.7 30 378-414 193-226 (574)
38 cd02889 SQCY Squalene cyclase 62.1 1.1E+02 0.0023 32.5 12.5 158 21-209 42-203 (348)
39 PF09624 DUF2393: Protein of u 61.3 43 0.00093 31.4 8.2 62 555-617 64-134 (149)
40 PF07705 CARDB: CARDB; InterP 57.3 63 0.0014 27.2 8.0 53 554-617 20-72 (101)
41 KOG1924 RhoA GTPase effector D 57.2 12 0.00025 43.9 4.1 23 164-186 172-194 (1102)
42 PF03173 CHB_HEX: Putative car 55.1 40 0.00088 32.5 6.9 75 545-624 26-119 (164)
43 PLN03012 Camelliol C synthase 53.4 4.8E+02 0.01 31.5 16.9 88 112-210 513-603 (759)
44 PRK09752 adhesin; Provisional 52.6 12 0.00025 46.2 3.3 8 122-129 482-489 (1250)
45 KOG1924 RhoA GTPase effector D 51.7 21 0.00045 42.0 4.9 6 581-586 642-647 (1102)
46 COG3889 Predicted solute bindi 47.3 11 0.00024 44.1 2.0 12 114-125 180-191 (872)
47 PRK05461 apaG CO2+/MG2+ efflux 47.3 1.2E+02 0.0025 28.1 8.3 54 550-609 26-83 (127)
48 PF07470 Glyco_hydro_88: Glyco 46.8 83 0.0018 33.5 8.5 79 106-209 209-287 (336)
49 PF01690 PLRV_ORF5: Potato lea 46.7 14 0.0003 41.1 2.5 7 620-626 163-169 (465)
50 TIGR02474 pec_lyase pectate ly 45.6 3.6E+02 0.0078 28.5 12.6 155 15-210 57-219 (290)
51 PF14796 AP3B1_C: Clathrin-ada 45.0 1.1E+02 0.0025 28.8 8.0 45 534-578 66-110 (145)
52 PRK13042 superantigen-like pro 43.1 20 0.00044 37.3 2.9 7 503-509 55-61 (291)
53 PF07462 MSP1_C: Merozoite sur 43.0 33 0.00071 38.8 4.7 7 446-452 213-219 (574)
54 PF07470 Glyco_hydro_88: Glyco 42.5 2.9E+02 0.0064 29.3 11.9 28 369-396 268-297 (336)
55 COG4225 Predicted unsaturated 42.3 1.4E+02 0.0031 32.2 9.0 119 66-210 175-304 (357)
56 PF13249 Prenyltrans_2: Prenyl 42.3 26 0.00057 30.4 3.2 20 111-131 42-61 (113)
57 PLN02993 lupeol synthase 40.6 4.3E+02 0.0092 31.9 13.6 165 22-210 436-603 (763)
58 PF02402 Lysis_col: Lysis prot 40.5 14 0.00031 27.4 1.0 22 1-22 1-24 (46)
59 cd04794 euk_LANCL eukaryotic L 38.7 4.5E+02 0.0097 28.0 12.6 114 106-256 182-297 (343)
60 cd04792 LanM-like LanM-like pr 37.9 5.4E+02 0.012 31.0 14.5 24 234-257 546-569 (825)
61 PF04379 DUF525: Protein of un 37.5 81 0.0018 27.3 5.4 54 551-610 10-67 (90)
62 PF10789 Phage_RpbA: Phage RNA 37.2 66 0.0014 28.8 4.8 60 182-244 45-106 (108)
63 KOG1586 Protein required for f 35.8 49 0.0011 34.0 4.2 34 173-206 73-106 (288)
64 PF07944 DUF1680: Putative gly 33.9 1.7E+02 0.0036 33.5 8.8 65 193-257 253-330 (520)
65 PF01299 Lamp: Lysosome-associ 33.7 52 0.0011 34.9 4.4 13 583-595 187-199 (306)
66 TIGR01451 B_ant_repeat conserv 33.4 61 0.0013 24.9 3.6 22 554-575 13-34 (53)
67 TIGR01787 squalene_cyclas squa 32.4 2E+02 0.0043 33.8 9.2 25 109-133 457-481 (621)
68 TIGR01507 hopene_cyclase squal 31.3 2.7E+02 0.0059 32.8 10.1 22 110-131 401-422 (635)
69 PF11611 DUF4352: Domain of un 30.5 81 0.0017 27.9 4.5 25 545-569 26-52 (123)
70 PF05753 TRAP_beta: Translocon 29.9 1.7E+02 0.0036 28.7 6.8 75 536-616 22-97 (181)
71 TIGR02474 pec_lyase pectate ly 28.8 7.1E+02 0.015 26.4 11.6 25 106-130 61-85 (290)
72 PRK15319 AIDA autotransporter- 28.5 55 0.0012 42.4 3.9 18 441-458 1636-1653(2039)
73 COG2967 ApaG Uncharacterized p 28.3 2.7E+02 0.0059 25.5 7.2 56 549-610 24-83 (126)
74 PF01345 DUF11: Domain of unkn 27.9 2.1E+02 0.0045 23.2 6.2 39 536-575 25-63 (76)
75 KOG4056 Translocase of outer m 27.7 99 0.0021 29.0 4.4 37 167-203 11-51 (143)
76 cd04791 LanC_SerThrkinase Lant 27.5 5.5E+02 0.012 26.6 10.9 49 234-284 202-250 (321)
77 PF06917 Pectate_lyase_2: Peri 27.1 52 0.0011 37.1 3.0 23 234-256 442-464 (557)
78 PF13956 Ibs_toxin: Toxin Ibs, 26.1 47 0.001 20.0 1.3 15 1-15 1-15 (19)
79 PF07221 GlcNAc_2-epim: N-acyl 25.3 1.2E+02 0.0027 32.2 5.6 82 167-256 20-107 (346)
80 PF13243 Prenyltrans_1: Prenyl 24.2 18 0.00039 31.4 -1.0 22 109-130 43-64 (109)
81 PF09492 Pec_lyase: Pectic aci 24.1 7.1E+02 0.015 26.4 10.6 87 106-210 56-145 (289)
82 PF08626 TRAPPC9-Trs120: Trans 23.1 2E+02 0.0043 36.5 7.5 71 553-626 799-889 (1185)
83 PF07174 FAP: Fibronectin-atta 23.0 2E+02 0.0043 30.0 6.0 26 538-563 118-144 (297)
84 PF11948 DUF3465: Protein of u 21.0 1.1E+02 0.0023 28.5 3.3 36 1-40 1-36 (131)
85 PF11906 DUF3426: Protein of u 20.7 5.9E+02 0.013 23.4 8.6 67 550-618 65-138 (149)
86 PF08139 LPAM_1: Prokaryotic m 20.1 52 0.0011 21.6 0.8 17 1-17 7-23 (25)
87 cd02889 SQCY Squalene cyclase 20.0 4.5E+02 0.0098 27.7 8.6 24 109-132 188-211 (348)
No 1
>PLN02171 endoglucanase
Probab=100.00 E-value=3.9e-148 Score=1238.42 Aligned_cols=621 Identities=81% Similarity=1.332 Sum_probs=561.2
Q ss_pred Ccchh-HHHHHHh-------hhhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceee
Q 006835 1 MEKFM-TPLLLLL-------CLPLALAGHDYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYD 72 (629)
Q Consensus 1 ~~~~~-~~~~~~~-------~~~~~~~~~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~D 72 (629)
|+|++ ++++++| |++.+.+.++|.++|++||+||++||||.+|+.+++.||++|++.|+++.++||+|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Y~~al~~sl~Fy~~QRsG~lp~~~~~~Wr~~s~~~Dg~~~~vDlsGGwyD 80 (629)
T PLN02171 1 MEKFARVILLALLLLAAAQLCFPVAFGGHDYGQALSKSILFFEAQRSGVLPPNQRVTWRANSGLFDGKASGVDLVGGYYD 80 (629)
T ss_pred CchhHhHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHccCCCCCcccCCCCccCCCCCCCCcCcccCCCCcee
Confidence 77777 4444443 334567889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccchhHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCC
Q 006835 73 AGDNVKFGLPMAFTVTMMSWSIIEYGKQMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMT 152 (629)
Q Consensus 73 AGD~~Ky~~~~a~s~~~L~~a~~ef~~~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~ 152 (629)
||||+||++|+|+++++|+|+++||++.+++.++++++|||||||+|||||||+++++||+||||+..||.+|++||+|+
T Consensus 81 AGD~vKf~~p~a~s~t~L~w~~~e~~~~~~~~g~~~~~Ldeikw~~Dyllk~~~~~~~~y~qVgdg~~DH~~W~~Pe~~~ 160 (629)
T PLN02171 81 AGDNVKFGLPMAFTVTMMSWSIIEYGKQMAAAGELGHAMDAVKWGTDYFIKAHPEPNVLYGEVGDGDTDHYCWQRPEDMT 160 (629)
T ss_pred CCCCceeccchHHHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCccccCcCChhHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEcCCCCcchHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCCCCccc
Q 006835 153 TDRRAYKIDPSNPGSDLAGETAAAMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSITVAQKYYRSISGYND 232 (629)
Q Consensus 153 ~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~~~~~~~Y~s~s~~~D 232 (629)
++|++|+|++++|||++++++|||||+||||||++||+||++||+|||++|+||+++|+.|+++++...++|+|.++|.|
T Consensus 161 ~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~s~y~D 240 (629)
T PLN02171 161 TDRQAYRIDPQNPGSDLAGETAAAMAAASIVFRRSNPGYANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSVSGYGD 240 (629)
T ss_pred ccceeEEecCCCCchHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888899998778999
Q ss_pred HHHHHHHHHHHHhCChhHHHHHhhcCcCCCCCCCCccccCCCcchHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHH
Q 006835 233 ELLWAAAWLYQASGNQHYLDYLGKNGDSMGGTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMC 312 (629)
Q Consensus 233 e~~wAAaeLy~aTG~~~Yl~~~~~~~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~ 312 (629)
||+|||+|||+||||++|+++++.+.+.++...|...+|+||++..|+++|++++++.++.+.+...+++|++.+|.|+|
T Consensus 241 El~WAAawLy~ATgd~~Yl~~~~~~~~~~~~~~~~~~~f~WD~k~~G~~~L~a~~~~~~~~~~~~~~~~~y~~~ad~~~~ 320 (629)
T PLN02171 241 ELLWAAAWLYQATNNQYYLDYLGNNGDALGGTGWSMTEFGWDVKYAGVQVLVAKFLMQGKAGEHAAVFQRYQQKAEFFMC 320 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcccCccccccccchHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999998877666666777778999999999999999887655555567788999999999999
Q ss_pred HhhcCCCCccccCCCCceecccCchHhHHHHHHHHHHHHHHHHhhcccccccCCCCCChHHHHHHHHhccccccCCCCCC
Q 006835 313 SCLGKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRA 392 (629)
Q Consensus 313 ~~~~~~~~~~~~tp~Gl~~~~~Wgs~~~~~n~a~l~~~y~~~~~~~~~~l~~~~~~~~~~~y~~~A~~qidYiLG~Np~~ 392 (629)
.++++...++.+||+||+|...|||+||++|++||+++|+|++...+..|+|..+....++|++||++|||||||+||++
T Consensus 321 ~~l~~~~~~~~~TpgGl~~~~~Wgs~~y~~naafl~~vyad~~~~~~~~~~c~~~~~~~~~y~~fA~~QidYiLG~Np~~ 400 (629)
T PLN02171 321 SCLGKGARNVQKTPGGLIYRQRWNNMQFVTSASFLLTVYSDYLASSGRALRCAAGNAAPSQLLAFAKSQVDYILGDNPRA 400 (629)
T ss_pred hhccCCCceeeecCCeeEEECCCChHHHHHHHHHHHHHHHHHhhhcccccccccccCCHHHHHHHHHHhhhhhcCCCCCC
Confidence 98877656789999999999999999999999999999999997766779999888889999999999999999999999
Q ss_pred cceEEeeCCCCCCCccccccccccccCCCCccccCCCccccccCCCCCCCcccceEecCCCCCCCcCcCCCccccccccc
Q 006835 393 TSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPAT 472 (629)
Q Consensus 393 ~SyV~G~G~n~p~~pHHR~s~~~~~~~~~~~~~c~~g~~~~~~~~~~~~~~l~GaLVGGPn~~d~y~D~~~~y~~NEvaI 472 (629)
+|||||||+|+|++||||.|+++.++.+|..+.|.+||++|++.+.+|||+|+||||||||.+|+|.|+|.+|++|||||
T Consensus 401 ~SYvVGyG~n~P~~pHHR~as~~~~~~~~~~~~C~~g~~~~~~~~~~np~vl~GAlVGGPd~~D~y~D~r~~y~~nEva~ 480 (629)
T PLN02171 401 TSYMVGYGANYPRQVHHRGSSIVSIKVDPSFVSCRGGYATWFSRKGSDPNLLTGAIVGGPDAYDNFADERDNYEQTEPAT 480 (629)
T ss_pred CceEeecCCCCCCCcccccccCCccccCccccCCCCccchhccCCCCCCCcccCceecCCCcCCCCCccccccccCceeE
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHhccCCCcccccccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEecccCCCCe
Q 006835 473 YNNAPILGILARLNAGHGGYNQLLPVIVPAATPVVTKPSPAPKPKTIPPTKPKTTPAPASSSGAIAIQQKLTTSWISNGK 552 (629)
Q Consensus 473 d~NA~lv~~la~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~v~~sW~~g~~ 552 (629)
|||||||++||+|...+||+.++++. .++|.++.+. .++.|..++ .+|.|......++|+|+++++|..+|+
T Consensus 481 d~NA~~vg~lA~l~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~ei~i~q~v~~sW~~~g~ 552 (629)
T PLN02171 481 YNNAPLLGVLARLAGGHGGYNQLLVV-VPAPSEVAIN------RTPAPQRRP-PTPAPASTSSPIEIEQKATASWKAKGR 552 (629)
T ss_pred ecchHHHHHHHHHHhhcCCccccccc-cCCccccccc------cCCCCCCCc-ccCCCccCcceeEEEEEEEEEEEcCCc
Confidence 99999999999999999999887722 2222222221 111111111 112222222489999999999999999
Q ss_pred eEEEEEEEEEeCCCCcccceEEEEecCCCCeeeeeecccEEeCCCccccCCCCCeEEEEEEecCCCCceeEEEEEeC
Q 006835 553 RYYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLEFVYIHTANAADVSVSAYTLA 629 (629)
Q Consensus 553 ~~~q~~vtV~N~g~~~i~~w~i~~~~~~~~~W~~~~~~~~~t~pswn~~i~~G~s~~FGfi~~~~~a~~~v~~~~~~ 629 (629)
+|+|++|+|+|++..+|++..|.+++...+||++...++.+++|+|..+|++|++++||||..+.|+++.|+++.|+
T Consensus 553 ~y~qy~v~I~N~s~~~ik~i~i~~~~~~~~iW~v~~~~ngytlPs~~~sL~aG~s~tFgyI~~~~pA~~~v~~y~~~ 629 (629)
T PLN02171 553 TYYRYSTTVTNRSAKTLKELHLGISKLYGPLWGLTKAGYGYVLPSWMPSLPAGKSLEFVYVHSASPADVWVSGYKLA 629 (629)
T ss_pred eEEEEEEEEEECCCCceeeeeeeeccccccchheeecCCcccCchhhcccCCCCeeEEEeecCCCCceEEEEEEEeC
Confidence 99999999999999999999999888888999999888889999999999999999999999877999999999874
No 2
>PLN02340 endoglucanase
Probab=100.00 E-value=1.8e-142 Score=1190.17 Aligned_cols=584 Identities=55% Similarity=1.006 Sum_probs=534.2
Q ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceeecCCCccccccchhHHHHHHHHHH
Q 006835 16 LALAGHDYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSII 95 (629)
Q Consensus 16 ~~~~~~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~~Ky~~~~a~s~~~L~~a~~ 95 (629)
.+.+.++|.++|++||+||++||||.||+++|+.||++||+.||.+.++||+|||||||||+||++|+|+++++|+|+++
T Consensus 24 ~~~~~~nY~~aL~~Sl~Fy~aQRsG~Lp~~~~~~WR~ds~l~Dg~~~~~DlsGGwyDAGD~vKf~~p~a~t~t~L~w~~~ 103 (614)
T PLN02340 24 AAAEAFNYGGALDKTLLFFEAQRSGKLPANQRVKWRGDSGLKDGFLQGVDLVGGYYDAGDHVKFGLPMAFAVTMLSWGAV 103 (614)
T ss_pred cccCCCcHHHHHHHHHHHHHHhcCcCCCccCCCcccccccCCCcccccCCCCCCceeCCCcceecchhHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHH
Q 006835 96 EYGKQMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAA 175 (629)
Q Consensus 96 ef~~~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AA 175 (629)
||++.+++.|++||+||||||++|||||||++++.||+||||+..||.+|++||+|+.+|++|+|+.++|||++++++||
T Consensus 104 ef~~~~~~~~~~~~~ldeirw~~Dyllk~~~~~~~~~~qVGdg~~DH~~W~~PE~~~~~R~~y~i~~~~pgSd~a~e~AA 183 (614)
T PLN02340 104 DFRKEITALNQMQRTLWAIRWGTDYFIKAHTQPNVLWGQVGDGDSDHYCWERAEDMTTPRTAYKLDQNHPGSDLAGETAA 183 (614)
T ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCcccccCCChhhcCCcCceeecCCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCCCCcccHHHHHHHHHHHHhCChhHHHHHh
Q 006835 176 AMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDYLG 255 (629)
Q Consensus 176 alA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~~~~~~~Y~s~s~~~De~~wAAaeLy~aTG~~~Yl~~~~ 255 (629)
|||+||||||++||+||++||+|||++|+||+++|+.|.++++.+.++|+| ++|.|||+|||+|||+||||++|+++++
T Consensus 184 AlAaas~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~s~~~a~~~Y~s-s~~~DEl~WAAawLy~ATgd~~Yl~~~~ 262 (614)
T PLN02340 184 ALAAASKAFKPYNSSYSDLLLVHAKQLFSFADKFRGLYDDSIQNAKKFYTS-SGYSDELLWAAAWLYRATGDEYYLKYVV 262 (614)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCCCccCCCCccccCCCC-CCcchHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999999998877778899998 9999999999999999999999999998
Q ss_pred hcCcCCCCCCCCccccCCCcchHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhcC-CCCccccCCCCceeccc
Q 006835 256 KNGDSMGGTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGK-GSRNVQKTPGGLIFRQR 334 (629)
Q Consensus 256 ~~~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~-~~~~~~~tp~Gl~~~~~ 334 (629)
.+...++...|...+|+||+|..|+++||++++..++...+...+++|++.+|.|+|.++.+ +++++++||+||.|...
T Consensus 263 ~~~~~~~~~~~~~~~f~WD~k~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~~~g~~v~~TpgGl~~~~~ 342 (614)
T PLN02340 263 DNAVYMGGTGWAVKEFSWDNKYAGVQILLSKILLEGRGGAYTSTLKQYQAKADYFACACLQKNGGYNIQLTPGGLMYVRE 342 (614)
T ss_pred HHHHhcccccccCCcCCccchhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHhhhccCCCCccccCCCceEEeCC
Confidence 87655555667667899999999999999988765544445677788999999999987766 56889999999999999
Q ss_pred CchHhHHHHHHHHHHHHHHHHhhcccccccCCCCCChHHHHHHHHhccccccCCCCCCcceEEeeCCCCCCCcccccccc
Q 006835 335 WNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSI 414 (629)
Q Consensus 335 Wgs~~~~~n~a~l~~~y~~~~~~~~~~l~~~~~~~~~~~y~~~A~~qidYiLG~Np~~~SyV~G~G~n~p~~pHHR~s~~ 414 (629)
|||+||++|++||+++|++++......|+|+.+...+++|+++|++|||||||+||+++|||||||+|+|+|||||.++|
T Consensus 343 Wgn~rya~~aafl~~vyad~l~~~~~~~~c~~~~~~~~~y~~fA~sQidYiLG~NP~~~SYVVGyG~n~P~~pHHR~as~ 422 (614)
T PLN02340 343 WNNLQYASSAAFLLAVYSDYLSAANAKLRCPDGLVQPQELLDFARSQADYILGKNPKGMSYMVGYGPKYPIHVHHRGSSI 422 (614)
T ss_pred CChHHHHHHHHHHHHHHHHHhhhcccccccCccccCHHHHHHHHHHhhHhhcCCCCCCCceEeccCCCCCCccccccccC
Confidence 99999999999999999999987777899998888899999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccCCCccccccCCCCCCCcccceEecCCCCCCCcCcCCCccccccccccCchHHHHHHHHHhcc---CCC
Q 006835 415 VSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAG---HGG 491 (629)
Q Consensus 415 ~~~~~~~~~~~c~~g~~~~~~~~~~~~~~l~GaLVGGPn~~d~y~D~~~~y~~NEvaId~NA~lv~~la~l~~~---~~g 491 (629)
+.+..++.++.|.+|+++|++.+.++|++|+||||||||.+|+|.|+|++|++||||||||||||++||+|... .|+
T Consensus 423 ~~~~~~~~~v~c~~g~~~~~~~~~~np~vL~GALVGGPd~~D~y~D~r~~y~~nEvAidyNAplvg~lA~L~~~~~~~~~ 502 (614)
T PLN02340 423 PSIFALHSTVGCVQGFDSWYRRKEADPNVIYGALVGGPDANDNFSDDRSNYEQTEPTLSGNAPLVGLFAKLQSASETADA 502 (614)
T ss_pred CccccccccccCcccccccccCCCCCCCCCCCceeeCCCCCCCCCccccccccccceeehhHHHHHHHHHHHhccccccc
Confidence 98888889999999999999999999999999999999999999999999999999999999999999999985 445
Q ss_pred cccccccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEecccCCCCeeEEEEEEEEEeCCCCcccc
Q 006835 492 YNQLLPVIVPAATPVVTKPSPAPKPKTIPPTKPKTTPAPASSSGAIAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKN 571 (629)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~v~~sW~~g~~~~~q~~vtV~N~g~~~i~~ 571 (629)
+.+ + +|.+.. +| |. +++ ..+.++|+++++|..+|++|||+.|+|+|++..+|+.
T Consensus 503 ~~~------~--~~~~~~-----~~---~~----~~~------~~~e~~~~~~~sw~~~g~~y~~~~v~i~N~s~~pi~~ 556 (614)
T PLN02340 503 YGS------Y--KPTPNT-----SS---PK----QSG------APVEFVHSITNTWTAGGTTYYRHKVIIKNKSQKPITD 556 (614)
T ss_pred ccc------C--CCCCCC-----CC---cc----cCC------CchhhhhhheeeeecCCceEEEEEEEEEeCCCCCchh
Confidence 543 1 110110 00 11 111 2355668999999999999999999999999999999
Q ss_pred eEEEEecCCCCeeeeee--cccEEeCCCccccCCCCCeEEEEEEecCCCCceeEEEE
Q 006835 572 LKLSISKLYGPLWGLTN--LGNAYGFPSWLNNLAAGKSLEFVYIHTANAADVSVSAY 626 (629)
Q Consensus 572 w~i~~~~~~~~~W~~~~--~~~~~t~pswn~~i~~G~s~~FGfi~~~~~a~~~v~~~ 626 (629)
..+.+.+....+|++.+ +.+.+++|+|..+|++|++.+|+||..+.|++++|+++
T Consensus 557 l~~~~~~l~g~lwgl~~~~~~~~y~~p~~~~tl~~g~~~~f~yi~~~~~~~~~~~~y 613 (614)
T PLN02340 557 LKLVIEDLSGPIWGLNPTKEKNTYELPQWQKVLQPGSQLSFVYVQGGPQAKVSVLSY 613 (614)
T ss_pred hhhhhhhcccchhcceeccccCCccCchhhhccCCCCeeEEEeccCCcchheecccc
Confidence 99999988889999984 46899999999999999999999998888999998765
No 3
>PLN02420 endoglucanase
Probab=100.00 E-value=3.3e-125 Score=1035.24 Aligned_cols=473 Identities=62% Similarity=1.109 Sum_probs=442.4
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceeecCCCccccccchhHHHHHHHHHHHH
Q 006835 18 LAGHDYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEY 97 (629)
Q Consensus 18 ~~~~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~~Ky~~~~a~s~~~L~~a~~ef 97 (629)
.++++|.++|++||+||++||||.+|+.++++||++|++.|+.+.++||+|||||||||+||++|+|+++++|+|+++||
T Consensus 37 i~~~~Y~~al~~sl~Fy~~QRsG~lp~~~~~~Wr~~s~~~Dg~~~~~DlsGGwyDAGD~~Kf~~p~a~t~~~L~w~~~ef 116 (525)
T PLN02420 37 VGRFDYGEALSKSLLYFEAQRSGRLPYNQRVTWRDHSGLTDGLEQGVDLVGGYHDAGDHVKFGLPMAFTVTMLSWSVIEY 116 (525)
T ss_pred CCcccHHHHHHHHHHHHHHhcCCCCCcCCCCcccccCcCcCCCcCcccCCCcceecCccceecchHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHH
Q 006835 98 GKQMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAM 177 (629)
Q Consensus 98 ~~~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAal 177 (629)
++.+++.+++|||||||||++|||||||+.++.+|+||||+..||.+|++||+++.+|++|.|+.++|+|++++++||||
T Consensus 117 ~d~~~~~g~~~d~Ldeikw~lD~llk~~~~~~~~~~qvGdg~~DH~~w~~Pe~~~~~R~~~~i~~~~pgsd~aa~~AAAL 196 (525)
T PLN02420 117 GDQLASTGELSHALEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDMTTSRRAFKIDENNPGSDIAGETAAAM 196 (525)
T ss_pred HHhhhhcCCcHHHHHHHHHHHHHHHHhCcCCCceEEeeCCCCcccccccChhhccccCceEEecCCCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCCCCcccHHHHHHHHHHHHhCChhHHHHHhhc
Q 006835 178 AAASIVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDYLGKN 257 (629)
Q Consensus 178 A~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~~~~~~~Y~s~s~~~De~~wAAaeLy~aTG~~~Yl~~~~~~ 257 (629)
|+||||||++||+||++||++||++|+||+++|+.|..+.+...++|+|+++|.||++|||+|||++|||++|+++++++
T Consensus 197 A~AS~vfk~~D~~YA~~~L~~Ak~ly~fA~~~~g~y~~~~~~~~g~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~a~~~ 276 (525)
T PLN02420 197 AAASIVFRSTNPHYSHLLLHHAQQLFEFGDKYRGKYDESLKVVKSYYASVSGYMDELLWGATWLYRATDNEHYMSYVVDM 276 (525)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCCccCCCCcccCCCCCCcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999987777778999988899999999999999999999999999877
Q ss_pred CcCCCCCCCCccccCCCcchHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhcC--CCCccccCCCCceecccC
Q 006835 258 GDSMGGTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGK--GSRNVQKTPGGLIFRQRW 335 (629)
Q Consensus 258 ~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~--~~~~~~~tp~Gl~~~~~W 335 (629)
...++...|...+|+||++..|+++||++++...+...++..++.|++.++.++|.++++ ++..+.+||+||.|...|
T Consensus 277 ~~~~~~~~~~~~~~~WD~k~~G~~~Lla~~~~~~~~~~~~~~l~~y~~~ad~~~~~~~~~~~~~~~~~~TpgGl~~~~~W 356 (525)
T PLN02420 277 AHQLGGLSWAMSEFSWDVKYAGVQLLASMLLKEEKHKQHSKVLQQYKSKADHYLCSILNKNINGTNVQRTPAGLLYVRQW 356 (525)
T ss_pred HHhcCCccccCcccCCcccHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHhhccCCCCCCcccccCCeeEEeCCC
Confidence 666666677767899999999999999987643332334577889999999999987765 345788999999999999
Q ss_pred chHhHHHHHHHHHHHHHHHHhhcccccccCCCCCChHHHHHHHHhccccccCCCCCCcceEEeeCCCCCCCccccccccc
Q 006835 336 NNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIV 415 (629)
Q Consensus 336 gs~~~~~n~a~l~~~y~~~~~~~~~~l~~~~~~~~~~~y~~~A~~qidYiLG~Np~~~SyV~G~G~n~p~~pHHR~s~~~ 415 (629)
||+||++|.+||+++|++++....+.+.|..+...+.+|++||++|||||||+||+++|||||||.|+|+|||||.+|||
T Consensus 357 gs~ryaan~afla~vya~~l~~~~~~~~c~~~~~~~~~~~~fA~~QidYiLG~NP~~~SYvVGfG~n~P~~pHHR~As~p 436 (525)
T PLN02420 357 NNMQYVSTASFLLTVYSDHLRKSNTDLECHEGTVTPDEMLGFAKSQIDYILGSNPMETSYLVGYGPKYPTRVHHRGASIA 436 (525)
T ss_pred CchHHHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHhhhhhccCCCCCCceEeccCCCCCCCccccccCCC
Confidence 99999999999999999999877778999888788899999999999999999999999999999999999999999998
Q ss_pred cccCCCCccccCCCccccccCCCCCCCcccceEecCCCCCCCcCcCCCccccccccccCchHHHHHHHHHhccCC
Q 006835 416 SIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHG 490 (629)
Q Consensus 416 ~~~~~~~~~~c~~g~~~~~~~~~~~~~~l~GaLVGGPn~~d~y~D~~~~y~~NEvaId~NA~lv~~la~l~~~~~ 490 (629)
.+..++..++|++||++|++.+.||+|+|+||||||||.+|.|.|+|.+|++|||+|||||+||++||+|....+
T Consensus 437 ~~~~~~~~~~c~~g~~~~~~~~~pn~~vL~GALVGGPd~~D~y~D~r~~y~~nE~~~~~nA~~vg~lA~L~~~~~ 511 (525)
T PLN02420 437 SFKEHKGFIGCTQGYDNWYGRSEPNPSVLVGALVGGPDCQDNFDDRRGNYVQTEACTYNTAPLVGVFARLIELEE 511 (525)
T ss_pred ccccccccccCcccccccccCCCCCcccccCceecCCCCCCCcccccccccccccchhhhhHHHHHHHHHHHhcc
Confidence 777777889999999999999999999999999999999999999999999999999999999999999997744
No 4
>PLN00119 endoglucanase
Probab=100.00 E-value=1.9e-123 Score=1013.85 Aligned_cols=467 Identities=57% Similarity=1.011 Sum_probs=434.6
Q ss_pred hhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceeecCCCccccccchhHHHHHHHH
Q 006835 14 LPLALAGHDYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWS 93 (629)
Q Consensus 14 ~~~~~~~~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~~Ky~~~~a~s~~~L~~a 93 (629)
+..++..++|.++|++||+||++||||.+|+.+|++||++|++.||.+.++||+|||||||||+||++|+|+++++|+|+
T Consensus 23 ~~~~~~~~nY~~aL~~sl~Ff~aQRsG~lp~~~r~~WRgds~~~dg~~~~~DlsGGwyDAGD~~Kf~~p~a~s~t~L~w~ 102 (489)
T PLN00119 23 MARGAVSTNYGEALTKSLLYFEAQRSGKLPSNQRVTWRGDSALRDGSDAHVDLTGGYYDAGDNMKFGFPLAFTTTMLAWS 102 (489)
T ss_pred HhcccccccHHHHHHHHHHHhHhcCCCCCCccCCCCCcCcccccCCCCCcccCCCCceeCCCCceeCcchHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHH
Q 006835 94 IIEYGKQMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGET 173 (629)
Q Consensus 94 ~~ef~~~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~ 173 (629)
++||++.|++.+++++||||||||+|||||||++++.||+||||+..||.+|++||+|+.+|++|.|+..+|+|++++++
T Consensus 103 ~~ef~~~~~~~~~~~~~lde~kw~~Dyllk~~~~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~ 182 (489)
T PLN00119 103 NIEMGSQLKAHHELGNALAALKWATDYLIKAHPQPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGET 182 (489)
T ss_pred HHHhHHHHhcCCccHHHHHHHHHHHHHHHHhcCCCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCCCCcccHHHHHHHHHHHHhCChhHHHH
Q 006835 174 AAAMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDY 253 (629)
Q Consensus 174 AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~~~~~~~Y~s~s~~~De~~wAAaeLy~aTG~~~Yl~~ 253 (629)
|||||+||||||++||+||++||++||++|+||+++|+.|.++++..+++|+| +++.||++|||+|||++|||++|+++
T Consensus 183 AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g~Y~s-s~~~DEl~WAAawLY~aTgd~~Yl~~ 261 (489)
T PLN00119 183 AAAMAAASIAFAPSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAGGFYAS-SGYEDELLWAAAWLHRATNDQTYLDY 261 (489)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCC-CchhhHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999998877777899998 89999999999999999999999999
Q ss_pred HhhcCcCCCCCCCCccccCCCcchHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceecc
Q 006835 254 LGKNGDSMGGTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKGSRNVQKTPGGLIFRQ 333 (629)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~tp~Gl~~~~ 333 (629)
++...... + + ...|+||+|..|+++||+++++.++. ..++.++.|++.++.|+|..++++...+.+||+||.|..
T Consensus 262 ~~~~~~~~-~--~-~~~f~Wd~k~~g~~vlLa~l~~~~~~-~~~~~~~~y~~~ae~~~~~~~~~~~~~~~~TpgGl~~~~ 336 (489)
T PLN00119 262 LTQASNTG-G--P-RTVFAWDDKFVGAQVLVAKLALEGKV-ESNGKIVEYKSMAEQFICNCAQKGSNNVKKTPGGLLWFL 336 (489)
T ss_pred HHhccccC-C--C-CcccChhhhHHHHHHHHHHHhccCCC-cchHHHHHHHHHHHHHHHhhccCCCccceecCCeeEEec
Confidence 88654321 1 1 24799999999999999998654432 234456789999999999877655457889999999999
Q ss_pred cCchHhHHHHHHHHHHHHHHHHhhcccccccCCCCCChHHHHHHHHhccccccCCCCCCcceEEeeCCCCCCCccccccc
Q 006835 334 RWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASS 413 (629)
Q Consensus 334 ~Wgs~~~~~n~a~l~~~y~~~~~~~~~~l~~~~~~~~~~~y~~~A~~qidYiLG~Np~~~SyV~G~G~n~p~~pHHR~s~ 413 (629)
.||++||++|++||+++|++++..++..+.|+.......+|++||++|||||||+||+++|||||||+|+|+|||||.+|
T Consensus 337 ~wg~~ry~~~~afla~~ya~yl~~~~~~~~c~~~~~~~~~~~~fA~~QidYiLG~NP~~~SYvVGyG~n~P~~pHHR~as 416 (489)
T PLN00119 337 PWNNLQYTTAASFVLSAYSKYLEAAKASIQCPNGALQASDLLQLARSQVDYILGSNPKNMSYMVGYGTNYPKKPHHRGAS 416 (489)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhhcccccccCCCCcCHHHHHHHHHHHHHHhcCCCCCCCceEeecCCCCCCccccccCC
Confidence 99999999999999999999997777789998877888999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccccCCCccccccCCCCCCCcccceEecCCCCCCCcCcCCCccccccccccCchHHHHHHHHHh
Q 006835 414 IVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLN 486 (629)
Q Consensus 414 ~~~~~~~~~~~~c~~g~~~~~~~~~~~~~~l~GaLVGGPn~~d~y~D~~~~y~~NEvaId~NA~lv~~la~l~ 486 (629)
|+.+..++.+++|.+||++|++.+.||||+|.||||||||.+|.|.|+|.+|++|||||||||+||++||+|.
T Consensus 417 ~~~~~~~~~~~~c~~g~~~~~~~~~pn~~vL~GAlVGGPd~~D~y~D~r~~y~~nEva~dyNA~~vgalA~l~ 489 (489)
T PLN00119 417 IVSIKKDKTPVTCSGGFDAWYNNPAPNPNVLMGAIVGGPDDNDVYGDERSNFQQAEPATVTVAPFVGVLAAVA 489 (489)
T ss_pred CCccccCCcccCCCCCccccccCCCCCcceecceeecCCCCCCCcCccccccccCcceeecchHHHHHhhhcC
Confidence 9987778889999999999999999999999999999999999999999999999999999999999999873
No 5
>PLN02266 endoglucanase
Probab=100.00 E-value=2.3e-122 Score=1009.71 Aligned_cols=467 Identities=53% Similarity=0.937 Sum_probs=431.2
Q ss_pred ccchhhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceeecCCCccccccchhHHHHHHHHHHH
Q 006835 17 ALAGHDYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIE 96 (629)
Q Consensus 17 ~~~~~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~~Ky~~~~a~s~~~L~~a~~e 96 (629)
..++++|.++|++||+||++||||.+|+.++++||++|++.|+.+.++||+|||||||||+||++|+|+++++|+|+++|
T Consensus 41 ~~~~~~Y~~aL~~sl~fy~~QRsG~lp~~~~~~Wr~ds~~~Dg~~~~~DlsGGwyDAGD~~Kf~~p~a~s~t~L~w~~~e 120 (510)
T PLN02266 41 RLASHNYRDALTKSILFFEGQRSGKLPSSQRMTWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIE 120 (510)
T ss_pred CCCcchHHHHHHHHHHHHHHhcCcCCCcccCCCCcccCCCCCCCcCcccCCCcceeCCCCceecchHHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHH
Q 006835 97 YGKQMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAA 176 (629)
Q Consensus 97 f~~~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAa 176 (629)
|++.+. +++|||||||||++|||||||+.+|+||+|||++..||.+|++||+++++|++|.|+.++|||++++++|||
T Consensus 121 f~~~~~--~~~pd~Ldelkw~~D~llk~~~~~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAA 198 (510)
T PLN02266 121 FGGLMK--SELQNAKDAIRWATDYLLKATAHPDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAA 198 (510)
T ss_pred hhhccc--cccHHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHH
Confidence 999885 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-ccccccccCCCCcccHHHHHHHHHHHHhCChhHHHHHh
Q 006835 177 MAAASIVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSI-TVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDYLG 255 (629)
Q Consensus 177 lA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~-~~~~~~Y~s~s~~~De~~wAAaeLy~aTG~~~Yl~~~~ 255 (629)
||+||||||++||+||++||++||++|+||+++|+.|.+.+ +..+++|.+.++|.|||+|||+|||++|||++|+++++
T Consensus 199 LAaas~vfk~~D~~yA~~~L~~Ak~ly~fa~~~~g~y~~~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~ 278 (510)
T PLN02266 199 LAAASLVFRKSDPTYSKLLVRRAIRVFQFADKYRGAYSNGLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQ 278 (510)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCccCCCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999987654 34568998878899999999999999999999999998
Q ss_pred hcCcCCCCCCCCccccCCCcchHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhcCCC-CccccCCCCceeccc
Q 006835 256 KNGDSMGGTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKGS-RNVQKTPGGLIFRQR 334 (629)
Q Consensus 256 ~~~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~~~-~~~~~tp~Gl~~~~~ 334 (629)
.+...++.. .....|+||+|..|+++||++++... ....++.|++.++.++|.++.+++ ..+++||+||+|...
T Consensus 279 ~~~~~~g~~-~~~~~~~WD~k~~ga~vLLa~~~~~~----~~~~~~~yk~~~d~~~~~~~~~~~~~~~~~TpGGL~~~~~ 353 (510)
T PLN02266 279 VNGQILGAD-EFDNTFGWDNKHVGARILLSKAFLVQ----KVQSLHEYKGHADNFICSVIPGAPFSSTQYTPGGLLFKMS 353 (510)
T ss_pred HHHhhcccc-ccCCccCcchhHHHHHHHHHHHHhhc----chHHHHHHHHHHHHHHHhccCCCCCCccccCCCeeEEeCC
Confidence 765444322 12347999999999999999875422 234567899999999998876643 356999999999999
Q ss_pred CchHhHHHHHHHHHHHHHHHHhhcccccccCCCCCChHHHHHHHHhccccccCCCCCCcceEEeeCCCCCCCcccccccc
Q 006835 335 WNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSI 414 (629)
Q Consensus 335 Wgs~~~~~n~a~l~~~y~~~~~~~~~~l~~~~~~~~~~~y~~~A~~qidYiLG~Np~~~SyV~G~G~n~p~~pHHR~s~~ 414 (629)
|||+||++|++||+++|+|++...+..+.|+.......+|++||++|||||||+||+++|||||||.|+|++||||.|||
T Consensus 354 wg~lrYa~~~afla~vya~~l~~~~~~~~cg~~~~~~~~~~~fA~~QidYiLG~NP~~~SyvVG~G~~~P~~pHHR~as~ 433 (510)
T PLN02266 354 DSNMQYVTSTSFLLLTYAKYLTSAKTVVNCGGTVVTPARLRSIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSL 433 (510)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcCCceecCCCccCHHHHHHHHHhhhceeccCCCCCCceEEecCCCCCccccccCCCC
Confidence 99999999999999999999987777888987777889999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccCCCccccccCCCCCCCcccceEecCCCCCCCcCcCCCccccccccccCchHHHHHHHHHhccCCC
Q 006835 415 VSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 491 (629)
Q Consensus 415 ~~~~~~~~~~~c~~g~~~~~~~~~~~~~~l~GaLVGGPn~~d~y~D~~~~y~~NEvaId~NA~lv~~la~l~~~~~g 491 (629)
|.+..+|..++|++|++ |++.+.||||+|.||||||||.+|.|.|+|.+|++|||||||||+||++||+|+..+|+
T Consensus 434 p~~~~~~~~~~C~~g~~-~~~~~~~n~~vL~GAlVGGPd~~D~y~D~r~~y~~nEva~dyNA~~vgalA~l~~~yg~ 509 (510)
T PLN02266 434 PSVAAHPAKIQCSQGFS-IMNSQSPNPNVLVGAVVGGPDQHDRFPDERSDYEQSEPATYINAPLVGALAYLAHSYGQ 509 (510)
T ss_pred CCcccCccccCCCCCcc-ccCCCCCCcceecceeecCCCCCCCCCccccccccCcceeecchHHHHHHHHHHHHhcC
Confidence 98888889999999987 88999999999999999999999999999999999999999999999999999988875
No 6
>PLN02613 endoglucanase
Probab=100.00 E-value=7.8e-122 Score=1004.60 Aligned_cols=478 Identities=51% Similarity=0.931 Sum_probs=437.2
Q ss_pred CcchhHHHHHHhhh----hcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceeecCCC
Q 006835 1 MEKFMTPLLLLLCL----PLALAGHDYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDN 76 (629)
Q Consensus 1 ~~~~~~~~~~~~~~----~~~~~~~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~ 76 (629)
|-||+|+.|.++++ .++.++++|.++|++||+||++||||.||+.+++.||++||+.|+.+.++||+|||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~aL~~sl~Fy~~QRsG~lp~~~~~~Wr~ds~l~Dg~~~~~DlsGGwyDAGD~ 80 (498)
T PLN02613 1 MGKLLVLMLVGMFLAFESLVALESPDYGDALNKSILFFEGQRSGKLPTNQRVKWRADSALSDGKPENVNLTGGYYDAGDN 80 (498)
T ss_pred CceehHHHHHHHHHHhhceeecccchHHHHHHHHHHHHHHhcCcCCCcccCCCCcccccCCCcccCcccCCCCceeCCCC
Confidence 77887554443333 25788899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcce
Q 006835 77 VKFGLPMAFTVTMMSWSIIEYGKQMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRR 156 (629)
Q Consensus 77 ~Ky~~~~a~s~~~L~~a~~ef~~~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~ 156 (629)
+||++|+|+++++|+|+++||++.++++|++|||||||||++|||||||+.+++||+||||+..||.+|++||+++++|+
T Consensus 81 ~Ky~~p~a~s~t~L~w~~~e~~~~~~s~~~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~dH~~W~~Pe~~~~~R~ 160 (498)
T PLN02613 81 VKFGWPMAFTVTLLSWAAIEYQNEISSVNQLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNADHQCWERPEDMDTPRT 160 (498)
T ss_pred ceecCchHHHHHHHHHHHHHhHHHHhhcCCchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCccccccCCccccCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCCCcchHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCCCCcccHHHH
Q 006835 157 AYKIDPSNPGSDLAGETAAAMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSITVAQKYYRSISGYNDELLW 236 (629)
Q Consensus 157 ~y~~~~~~pgs~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~~~~~~~Y~s~s~~~De~~w 236 (629)
+|.++.++|+|++++++|||||+||||||++||+||++||++||++|+||+++|+.|.++ .++|.+.+++.||++|
T Consensus 161 ~~~~t~~~pgTd~a~~~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~y~~~----~~~y~s~s~~~DEl~W 236 (498)
T PLN02613 161 LYKITSSSPGSEAAGEAAAALAAASLVFKDVDSSYSSKLLNHARSLFEFADKYRGSYQAS----CPFYCSYSGYQDELLW 236 (498)
T ss_pred eEecCCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCCcCCC----CCcccccCccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999988653 4688877889999999
Q ss_pred HHHHHHHHhCChhHHHHHhhcCcCCCCCCCCccccCCCcchHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhc
Q 006835 237 AAAWLYQASGNQHYLDYLGKNGDSMGGTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLG 316 (629)
Q Consensus 237 AAaeLy~aTG~~~Yl~~~~~~~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~ 316 (629)
||+|||++|||++|+++++.+..... ....|+||+|..|+++|+++..+.++ ..++.|++.++.++|.++.
T Consensus 237 AAawLy~aTGd~~Yl~~~~~~~~~~~----~~~~~~Wd~~~~G~~vLla~~~~~~~-----~~~~~yk~~~e~~~~~~~~ 307 (498)
T PLN02613 237 AAAWLYKATGEKKYLNYVISNKGWSQ----AVNEFSWDNKFAGAQALLASEFYGGA-----NDLAKFKTDVESFVCALMP 307 (498)
T ss_pred HHHHHHHHhCCHHHHHHHHhcccccc----CCCccCccchHHHHHHHHHHHHhcCc-----chHHHHHHHHHHHHHHhcc
Confidence 99999999999999999987632111 12468999999999999998754321 3356788899999998876
Q ss_pred CC-CCccccCCCCceecccCchHhHHHHHHHHHHHHHHHHhhcc-cccccCCCCCChHHHHHHHHhccccccCCCCCCcc
Q 006835 317 KG-SRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAG-RDLKCSAGNVAPAELLGFAKSQVDYILGDNPRATS 394 (629)
Q Consensus 317 ~~-~~~~~~tp~Gl~~~~~Wgs~~~~~n~a~l~~~y~~~~~~~~-~~l~~~~~~~~~~~y~~~A~~qidYiLG~Np~~~S 394 (629)
+. ...+.+||+||.|...||++||++|.+||+++|++++.+.. ..+.|........+|++||++|||||||+||+++|
T Consensus 308 ~~~~~~~~~TPgGL~~~~~wg~lry~~~~afla~~ya~~l~~~~~~~~~c~~~~~~~~~~~~~a~~Qi~yiLG~Np~~~s 387 (498)
T PLN02613 308 GSSSVQIKTTPGGLLFTRDSSNLQYVTTATTVLFIYSKTLTKAGVGGIQCGSAQFSASQIRNFAKSQVDYILGNNPMKMS 387 (498)
T ss_pred CCCCcccccCCCceEEeCCCCcHHHHHHHHHHHHHHHHHHhhcccCccccCCcccCHHHHHHHHHHhHHHhcCCCCCCCc
Confidence 63 44689999999999999999999999999999999986553 56889877777899999999999999999999999
Q ss_pred eEEeeCCCCCCCccccccccccccCCCCccccCCCccccccCCCCCCCcccceEecCCCCCCCcCcCCCccccccccccC
Q 006835 395 YMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYN 474 (629)
Q Consensus 395 yV~G~G~n~p~~pHHR~s~~~~~~~~~~~~~c~~g~~~~~~~~~~~~~~l~GaLVGGPn~~d~y~D~~~~y~~NEvaId~ 474 (629)
||||||.|+|++||||.+|||.+..+|..+.|.+||++|++.+.|||+++.||||||||.+|.|.|+|.+|++|||||||
T Consensus 388 yvvG~G~n~P~~pHHR~as~p~~~~~~~~~~c~~g~~~~~~~~~Pnp~~l~GAlVGGPd~~D~y~D~r~~y~~nEva~dy 467 (498)
T PLN02613 388 YMVGFGTKYPTQIHHRGSSIPSIQVLPEKVDCNGGFSSYYNSDTPNPNVHVGAIVGGPDSNDQYSDKRSDYSHAEPTTYI 467 (498)
T ss_pred ceeccCCCCCCcccccccCCCccccCccccCCCCCccccccCCCCCCceeeeeeecCCCcCCCccccccccccccceeec
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhccCCC
Q 006835 475 NAPILGILARLNAGHGG 491 (629)
Q Consensus 475 NA~lv~~la~l~~~~~g 491 (629)
||+||++||+|+...-+
T Consensus 468 NA~~vgalA~l~~~~~~ 484 (498)
T PLN02613 468 NAAFVGSVAALIKQVSR 484 (498)
T ss_pred ccHHHHHHHHHHHhhcc
Confidence 99999999999977655
No 7
>PLN02909 Endoglucanase
Probab=100.00 E-value=1.7e-121 Score=997.86 Aligned_cols=456 Identities=50% Similarity=0.878 Sum_probs=420.4
Q ss_pred ccchhhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceeecCCCccccccchhHHHHHHHHHHH
Q 006835 17 ALAGHDYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIE 96 (629)
Q Consensus 17 ~~~~~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~~Ky~~~~a~s~~~L~~a~~e 96 (629)
...+++|.++|++||+||++||||.||+.+|++||++||+.||.+.++||+|||||||||+||++|+|+++++|+|+++|
T Consensus 29 ~~~~~nY~~aL~~sl~Fy~aQRsG~lp~~~~~~Wr~ds~l~Dg~~~~~DlsGGwyDAGD~~Kf~~p~a~s~~~L~w~~~~ 108 (486)
T PLN02909 29 VGTHFNYKDALTKSIIFLEAQRSGKLPPNNRVPWRGDSALDDGKLANVDLVGGYYDAGDNVKYGLPMAFTVTTLAWSTLA 108 (486)
T ss_pred cCCCCcHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccccCCccccCCCCCceeCCCCceeCCchHHHHHHHHHHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHH
Q 006835 97 YGKQMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAA 176 (629)
Q Consensus 97 f~~~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAa 176 (629)
|++.|++.+++|||||||||++|||||||+.+|.||+|||++..||.+|++||+|+++|++|.|+.++|||++++++|||
T Consensus 109 y~~~~~~~g~~~d~ldeikw~~D~llk~~~~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AAA 188 (486)
T PLN02909 109 YEKELRATGELENVRAAIRWGTDYFLKAASRKNRLYVQVGDPNLDHQCWVRPENMKTPRTVLEIDEKTPGTEIAAETAAA 188 (486)
T ss_pred hHHHHhhcCChHHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCcccCCChhhccCCceeEecCCCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCCCCcccHHHHHHHHHHHHhCChhHHHHHhh
Q 006835 177 MAAASIVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDYLGK 256 (629)
Q Consensus 177 lA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~~~~~~~Y~s~s~~~De~~wAAaeLy~aTG~~~Yl~~~~~ 256 (629)
||+||||||++||+||++||++||++|+||++||+.|... .++|++.++|.|||+|||+|||++|||++|+++++.
T Consensus 189 lA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~----~~~y~s~s~y~DEl~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 189 MAASSMVFRHVDHKYSRRLLNKAKLLFKFAKAHKGTYDGE----CPFYCSYSGYNDELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCcCCC----CCccccCCCcchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999999999999999999999999999999988642 468988788999999999999999999999999876
Q ss_pred cCcCCCCCCCCccccCCCcchHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhcCCCC-ccccCCCCceecccC
Q 006835 257 NGDSMGGTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKGSR-NVQKTPGGLIFRQRW 335 (629)
Q Consensus 257 ~~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~~~~-~~~~tp~Gl~~~~~W 335 (629)
... . .....|+||+|..|+++||+++.... +..++.|++.+|.++|..+++.++ .+.+||+||.|...|
T Consensus 265 ~~~-~----~~~~~~sWD~k~~g~~~lLa~~~~~~-----~~~~~~y~~~ad~~~~~~~~~~~~~~~~~TpgGl~~~~~w 334 (486)
T PLN02909 265 EAI-S----ASVAEFSWDLKYAGAQVLLSKLNFEG-----EKGLQSYKQQADSFVCSVLPGSPFHQVFITPGGMIHLRDG 334 (486)
T ss_pred ccc-c----cCCCccCCcccccHHHHHHHHhhccc-----chhHHHHHHHHHHHHHHhccCCCCcccccCCCceeEecCC
Confidence 321 1 11246899999999999998874321 134578999999999987766544 567899999999999
Q ss_pred chHhHHHHHHHHHHHHHHHHhhcccccccCCCCCChHHHHHHHHhccccccCCCCCCcceEEeeCCCCCCCccccccccc
Q 006835 336 NNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIV 415 (629)
Q Consensus 336 gs~~~~~n~a~l~~~y~~~~~~~~~~l~~~~~~~~~~~y~~~A~~qidYiLG~Np~~~SyV~G~G~n~p~~pHHR~s~~~ 415 (629)
||+||+++++||+++|++++......+.|......+++|++||++|||||||+||+++|||||||+|+|++||||.+|||
T Consensus 335 gn~rya~~aafLa~~ya~~l~~~~~~~~c~~~~~~~~~y~~fA~~QidYiLG~NP~~~SYVVGfG~n~P~~pHHR~as~~ 414 (486)
T PLN02909 335 ANSQYVTSTAFLFSVYSDILRRHNQKVMCGNQQFDSTRLMAFAKQQIDYLLGANPQGRSYMVGFGPNPPKQPHHRGASVP 414 (486)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHHHHHHHhcCCCCCCCceEeccCCCCcCCccccccCCC
Confidence 99999999999999999998766777999887788999999999999999999999999999999999999999999998
Q ss_pred cccCCCCccccCCCccccccCCCCCCCcccceEecCCCCCCCcCcCCCccccccccccCchHHHHHHHHHhc
Q 006835 416 SIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNA 487 (629)
Q Consensus 416 ~~~~~~~~~~c~~g~~~~~~~~~~~~~~l~GaLVGGPn~~d~y~D~~~~y~~NEvaId~NA~lv~~la~l~~ 487 (629)
... ++..++|.+||++|++.+.||||+|.||||||||.+|.|.|+|.+|++|||||||||+||++||+|..
T Consensus 415 ~~~-~~~~~~c~~g~~~~~~~~~pn~~vL~GAlVGGPd~~D~y~D~r~~y~~nE~a~dyNA~~vg~lA~l~~ 485 (486)
T PLN02909 415 VLP-ANTPVNCGLSFVEWFNKDRPNPNELTGAIVGGPDRQDNFVDKRWNSSYTEPCTYINSLAVGVLAKLAA 485 (486)
T ss_pred Ccc-cCcccCCCCcccccccCCCCCcceeccceecCCCCCCCccccccccccCcceeecchHHHHHHHHHhc
Confidence 643 35678999999999999999999999999999999999999999999999999999999999999975
No 8
>PLN02308 endoglucanase
Probab=100.00 E-value=3.2e-121 Score=999.94 Aligned_cols=472 Identities=55% Similarity=0.958 Sum_probs=428.4
Q ss_pred HHHHhhhhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceeecCCCccccccchhHH
Q 006835 8 LLLLLCLPLALAGHDYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTV 87 (629)
Q Consensus 8 ~~~~~~~~~~~~~~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~~Ky~~~~a~s~ 87 (629)
|++++.......+++|.++|++||+||++||||++|+.++++||+++++.||.+.++||+|||||||||+||++|+++++
T Consensus 14 ~~~~~~~~~~~~~~~Y~~al~~sl~fy~~QRsG~lp~~~~~~Wr~~s~~~dg~~~~~DlsGGWyDAGD~~Ky~~p~a~s~ 93 (492)
T PLN02308 14 LLLLFSPPVIGAGHDYRDALRKSILFFEGQRSGKLPPDQRLKWRRDSALHDGSSAGVDLTGGYYDAGDNVKFGFPMAFTT 93 (492)
T ss_pred HHHHHccccccCcchHHHHHHHHHHHHHHhcCcCCCcccCCCCcccCcCCCCCCCeeeCCCCceeCCCcCeecCchHHHH
Confidence 33333334577889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcch
Q 006835 88 TMMSWSIIEYGKQMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGS 167 (629)
Q Consensus 88 ~~L~~a~~ef~~~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs 167 (629)
++|+|+++||++.+. ++.+++|||||||+|||||||+.+|.||+|||++..||.+|++||+++++|++|.|+.++|+|
T Consensus 94 t~L~w~~~e~~~~~~--~e~~~~ldeikw~~D~llkm~~~~~~vy~qVg~~~~dh~~W~~Pe~~~~~R~~y~~~~~~pgS 171 (492)
T PLN02308 94 TLMSWSIIDFGRTMG--PELENAVKAVKWATDYLMKATAIPNVVYVQVGDAYSDHNCWERPEDMDTLRTVYKIDPSHPGS 171 (492)
T ss_pred HHHHHHHHHhHhhhc--chhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCccCCCChhHcCCcceEEecCCCCCcc
Confidence 999999999999884 578999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc-ccccccCCCCcccHHHHHHHHHHHHhC
Q 006835 168 DLAGETAAAMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSITV-AQKYYRSISGYNDELLWAAAWLYQASG 246 (629)
Q Consensus 168 ~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~~~-~~~~Y~s~s~~~De~~wAAaeLy~aTG 246 (629)
++++++|||||+||||||++||+||++||++||++|+||+++|+.|.++.+. .+++|++++++.|||+|||+|||+|||
T Consensus 172 d~a~~~AAAlA~as~vf~~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~~Y~~~s~~~DEl~WAAawLy~ATg 251 (492)
T PLN02308 172 DVAGETAAALAAASIVFRKRDPAYSRLLLDRAVRVFAFADKYRGAYSSSLHAAVCPFYCDFNGYQDELLWGAAWLHKASR 251 (492)
T ss_pred hHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccCCCcCCCCcccHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999876543 357898878899999999999999999
Q ss_pred ChhHHHHHhhcCcCCCCCCCCccccCCCcchHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhcCC-CCccccC
Q 006835 247 NQHYLDYLGKNGDSMGGTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKG-SRNVQKT 325 (629)
Q Consensus 247 ~~~Yl~~~~~~~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~~-~~~~~~t 325 (629)
|++|+++++.+...++.. +....|+||+|..|+++||+++.+.++ +..++.|++.+|.|+|.++... ...+++|
T Consensus 252 d~~Yl~~~~~~~~~~~~~-~~~~~f~WD~k~~G~~~Lla~~~~~~~----~~~~~~~~~~ad~~l~~~~~~~~~~~~~~T 326 (492)
T PLN02308 252 RREYREYIVKNEVILGAG-DTINEFGWDNKHAGINVLISKEVLMGK----AEYFQSFKQNADGFICSLLPGISHPQVQYS 326 (492)
T ss_pred CHHHHHHHHHHHHHhCCC-CCCcccccccHHHHHHHHHHHHHhcCc----hhHHHHHHHHHHHHHHHhccCCCCCcceeC
Confidence 999999988754333222 223579999999999999998644332 3467789999999999887642 3358999
Q ss_pred CCCceecccCchHhHHHHHHHHHHHHHHHHhhcccccccCCCCCChHHHHHHHHhccccccCCCCCCcceEEeeCCCCCC
Q 006835 326 PGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQ 405 (629)
Q Consensus 326 p~Gl~~~~~Wgs~~~~~n~a~l~~~y~~~~~~~~~~l~~~~~~~~~~~y~~~A~~qidYiLG~Np~~~SyV~G~G~n~p~ 405 (629)
|+||.|...||++||++|++||+++|+|++..+.+.+.|.......++|++||++|||||||+||+++|||||||+|+|+
T Consensus 327 pgGl~~~~~~snlrya~naafLa~~ya~~l~~~~~~~~cg~~~~~~~~y~~fA~~QidYiLG~NP~~~SYVVGfG~n~P~ 406 (492)
T PLN02308 327 PGGLLFKVGGSNMQHVTSLSFLLLAYSNYLSHANKVVPCGESTASPALLRQVAKRQVDYILGDNPLRMSYMVGYGSRFPQ 406 (492)
T ss_pred CCeeEEeCCCchHHHHHHHHHHHHHHHHHHhhcCCccccCCCccCHHHHHHHHHhccceeccCCCCCCceEeccCCCCCC
Confidence 99999998999999999999999999999877666788987777889999999999999999999999999999999999
Q ss_pred CccccccccccccCCCCccccCCCccccccCCCCCCCcccceEecCCCCCCCcCcCCCccccccccccCchHHHHHHHHH
Q 006835 406 RVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARL 485 (629)
Q Consensus 406 ~pHHR~s~~~~~~~~~~~~~c~~g~~~~~~~~~~~~~~l~GaLVGGPn~~d~y~D~~~~y~~NEvaId~NA~lv~~la~l 485 (629)
|||||.+|||.+..++..++|.+|++ |++.+.||||+|.||||||||.+|+|.|+|.+|++|||||||||+||++||+|
T Consensus 407 ~pHHR~as~p~~~~~~~~~~c~~~~~-~~~~~~pnp~vL~GAlVGGPd~~d~y~D~r~~y~~nEva~dyNA~~vg~la~l 485 (492)
T PLN02308 407 RIHHRGSSLPSVAAHPARIGCKEGSR-YFLSPNPNPNLLVGAVVGGPNVTDAFPDSRPYFQQSEPTTYINAPLVGLLAYF 485 (492)
T ss_pred chhhcCCCCCCcccCccccCCCCCcc-ccCCCCCCcceeeceeecCCCCCCCCCccccccccCceeeehhhHHHHHHHHH
Confidence 99999999998777788899999986 89999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q 006835 486 NA 487 (629)
Q Consensus 486 ~~ 487 (629)
..
T Consensus 486 ~~ 487 (492)
T PLN02308 486 SA 487 (492)
T ss_pred hc
Confidence 94
No 9
>PLN02175 endoglucanase
Probab=100.00 E-value=2.7e-121 Score=994.31 Aligned_cols=473 Identities=48% Similarity=0.865 Sum_probs=427.4
Q ss_pred hHHHHHHhhhhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceeecCCCccccccch
Q 006835 5 MTPLLLLLCLPLALAGHDYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVKFGLPMA 84 (629)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~~Ky~~~~a 84 (629)
+++|++.+........++|.++|++||+||++||||.||+++|++||++||+.||.+.++||+|||||||||+||++|+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~Y~~aL~kSl~Fy~aQrsG~Lp~~~r~~WRgds~l~Dg~~~~~DlsGGwyDAGD~vKf~~p~A 86 (484)
T PLN02175 7 FVFLFSSLLIENTDANPNYKEALSKSLLFFQGQRSGPLPRGQQLSWRASSGLSDGSAAHVDLTGGYYDAGDNVKFNFPMA 86 (484)
T ss_pred hHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhCcCCCCcCCCCCccccccccCccCccCCCCCeeeCCCCCeeCchHH
Confidence 35555555555566789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhcC-CCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCC
Q 006835 85 FTVTMMSWSIIEYGKQMAASGELGHAMNAIKWGTDYFIKAHP-QPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPS 163 (629)
Q Consensus 85 ~s~~~L~~a~~ef~~~~~~~~~~~dlLde~kwgld~llk~~~-~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~ 163 (629)
+++++|+|+++||++.+. ++..++||||||++|||||||+ ++|.||+|||++..||.+|++||+|+++|++|.|+++
T Consensus 87 ~t~t~LaW~~~e~~~~~~--~~~~~~l~~lkw~~Dyllk~~~~~~g~vy~qVG~~~~Dh~~W~~PE~~~~~R~~~~is~~ 164 (484)
T PLN02175 87 FTTTMLSWSALEYGKRMG--PELENARVNIRWATDYLLKCARATPGKLYVGVGDPNVDHKCWERPEDMDTPRTVYSVSPS 164 (484)
T ss_pred HHHHHHHhhhhhcccccc--hHHHHHHHHHHHHHHHHHhCcCCCCCeEEEEeCCCCCCcccCCChhHccCccceEecCCC
Confidence 999999999999998874 5789999999999999999985 6899999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc-ccccccCCCCcccHHHHHHHHHH
Q 006835 164 NPGSDLAGETAAAMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSITV-AQKYYRSISGYNDELLWAAAWLY 242 (629)
Q Consensus 164 ~pgs~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~~~-~~~~Y~s~s~~~De~~wAAaeLy 242 (629)
+|||++++++|||||+||||||++||+||++||+|||++|+||+++|+.|.++++. .+++|+|.++|.|||+|||+|||
T Consensus 165 ~PGSd~aae~AAALAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~~Y~s~s~y~DEl~WAAawLY 244 (484)
T PLN02175 165 NPGSDVAAETAAALAAASMVFRKVDSKYSRLLLATAKKVMQFAIQYRGAYSDSLSSSVCPFYCSYSGYKDELMWGASWLL 244 (484)
T ss_pred CCccHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhCCCCcccCccccccCccccCCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876543 46899988899999999999999
Q ss_pred HHhCChhHHHHHhhcCcCCCCCCCCccccCCCcchHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhcCC-CCc
Q 006835 243 QASGNQHYLDYLGKNGDSMGGTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKG-SRN 321 (629)
Q Consensus 243 ~aTG~~~Yl~~~~~~~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~~-~~~ 321 (629)
+||||++|+++++.... .+...+|+||+|..|+++||+++.+.++. .-++.|++.++.++|.++.+. ...
T Consensus 245 ~ATgd~~Yl~~~~~~~~-----~~~~~~~~Wd~k~~g~~vLla~~~~~~~~----~~~~~y~~~~~~~~~~~~~~~~~~~ 315 (484)
T PLN02175 245 RATNDPYYANFIKSLGG-----GDQPDIFSWDNKYAGAYVLLSRRALLNKD----SNFEQYKQAAENFICKILPDSPSSS 315 (484)
T ss_pred HHhCCHHHHHHHHHcCC-----CCCCCccCCcCHHHHHHHHHHHhhhcCCC----chHHHHHHHHHHHHHhccCCCCCcc
Confidence 99999999999876321 11234799999999999999986543321 234578889999999887653 347
Q ss_pred cccCCCCceecccCchHhHHHHHHHHHHHHHHHHhhcccccccCCCCCChHHHHHHHHhccccccCCCCCCcceEEeeCC
Q 006835 322 VQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRATSYMVGYGN 401 (629)
Q Consensus 322 ~~~tp~Gl~~~~~Wgs~~~~~n~a~l~~~y~~~~~~~~~~l~~~~~~~~~~~y~~~A~~qidYiLG~Np~~~SyV~G~G~ 401 (629)
+.+||+||+|..+||++||++|.+||+++|++++...+..+.|........+|++||++|||||||+||+++|||||||.
T Consensus 316 ~~~TpgGL~~~~~wg~lrya~~~afla~~ya~~l~~~~~~~~cg~~~~~~~~~~~fA~~Q~~yiLG~np~~~syvvG~g~ 395 (484)
T PLN02175 316 TQYTQGGLMYKLPQSNLQYVTSITFLLTTYAKYMKSTKHTFNCGNSVIVPNALISLSKRQVDYILGDNPIKMSYMVGFSS 395 (484)
T ss_pred ccccCCceEEECCCCcHHHHHHHHHHHHHHHHHHhhcccccccCCCccCHHHHHHHHHHhhhhhccCCCCCCceEeecCC
Confidence 89999999999999999999999999999999987767788998887888999999999999999999999999999999
Q ss_pred CCCCCccccccccccccCCCCccccCCCccccccCCCCCCCcccceEecCCCCCCCcCcCCCccccccccccCchHHHHH
Q 006835 402 NYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGI 481 (629)
Q Consensus 402 n~p~~pHHR~s~~~~~~~~~~~~~c~~g~~~~~~~~~~~~~~l~GaLVGGPn~~d~y~D~~~~y~~NEvaId~NA~lv~~ 481 (629)
|+|++||||.+|||.....+..++|.+||+ +++.+.||||+|.||||||||.+|.|.|+|.+|++|||||||||+||++
T Consensus 396 n~p~~pHHR~AS~p~~~~~~~~~~C~~g~~-~~~~~~pn~~vL~GAlVGGPd~~D~y~D~r~dy~~nEva~dyNA~~vga 474 (484)
T PLN02175 396 NFPKRIHHRASSLPSHALRSNSLGCNGGFQ-SFYTQNPNPNILTGAIVGGPNQNDGYPDQRDDYSHAEPATYINAAFVGP 474 (484)
T ss_pred CCCCCccccccCCCcccccccccCCCCCcc-cccCCCCCcceecceeecCCCCCCCcCccccccccCcceeecchHHHHH
Confidence 999999999999987665666689999986 5667899999999999999999999999999999999999999999999
Q ss_pred HHHHhccC
Q 006835 482 LARLNAGH 489 (629)
Q Consensus 482 la~l~~~~ 489 (629)
||+|....
T Consensus 475 lA~l~~~~ 482 (484)
T PLN02175 475 LAYFAAGR 482 (484)
T ss_pred HHHHhcCC
Confidence 99998753
No 10
>PLN02345 endoglucanase
Probab=100.00 E-value=6.9e-119 Score=976.53 Aligned_cols=454 Identities=50% Similarity=0.895 Sum_probs=414.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceeecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Q 006835 26 ALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAASG 105 (629)
Q Consensus 26 ~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~~Ky~~~~a~s~~~L~~a~~ef~~~~~~~~ 105 (629)
+|++||+||++||||.+ +.+++.||++||+.||.+.++||+|||||||||+||++|+|+++++|+|+++||++.+++.+
T Consensus 1 aL~~sl~Fy~aQrsG~l-~~~~~~Wrgds~l~Dg~~~~~DlsGGwyDAGD~~Kf~~p~a~t~t~L~w~~~e~~~~~~~~~ 79 (469)
T PLN02345 1 ALKIALQFFDIQKSGKL-ENNPIPWRGDSALLDGSDAGLDLSKGMYDAGDHMKFGFPMAFTATVLSWSILEYGDQMNAAN 79 (469)
T ss_pred CHHHHHHHHHHhcCCCC-ccCCCCccccccccccccccCcCCCCceeCCCCceeCchhHHHHHHHHHHHHHhhhhhhccc
Confidence 58999999999999999 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHhhhcc
Q 006835 106 ELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFR 185 (629)
Q Consensus 106 ~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k 185 (629)
++|||||||||++|||||||+++|+||+|||++..||.+|++||+|+.+|++|.|+.++|||++++++|||||+||||||
T Consensus 80 ~~~~~ldelkw~~Dyllk~~~~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk 159 (469)
T PLN02345 80 QLDSAKDSLKWITDYLINAHPSENVLYIQVGDPKLDHKCWERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFK 159 (469)
T ss_pred chHHHHHHHhHHHHHHHHhcCCCCeEEEEecCCCCCcccCCChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCCCCcccHHHHHHHHHHHHhCChhHHHHHhhc-CcCCCCC
Q 006835 186 HSDPAYSSELLRHAYQLFDFADKYRGKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDYLGKN-GDSMGGT 264 (629)
Q Consensus 186 ~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~~~~~~~Y~s~s~~~De~~wAAaeLy~aTG~~~Yl~~~~~~-~~~~~~~ 264 (629)
++||+||++||++||++|+||+++|+.|...++...++|+| +++.|||+|||+|||+||||++|+++++.. ...+...
T Consensus 160 ~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~Y~s-~~~~DEl~WAAawLy~ATgd~~Yl~~~~~~~~~~~~~~ 238 (469)
T PLN02345 160 SSDSTYSDTLLKHAKQLFNFADKYRGSYSESIPEVQDYYNS-TGYGDELLWAASWLYHATGDKTYLAYVTGKNGKEFADW 238 (469)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCccCCCCCC-cccccHHHHHHHHHHHHhCCHHHHHHHHhhhhhhhccc
Confidence 99999999999999999999999999998776667789998 899999999999999999999999998532 2222211
Q ss_pred CCCccccCCCcchHHHHHHHHHHhhcCCC---CCchHHHHHHHHHHHHHHHHhhcCCC-CccccCCCCceecccCchHhH
Q 006835 265 GWGMTEFGWDVKYPGVQTLVAKFLMQGKA---GHYAPVFERYQQKAEYFMCSCLGKGS-RNVQKTPGGLIFRQRWNNMQF 340 (629)
Q Consensus 265 ~~~~~~~~Wd~~~~g~~~lla~~~~~~~~---~~~~~~~~~~~~~ad~~~~~~~~~~~-~~~~~tp~Gl~~~~~Wgs~~~ 340 (629)
+. ...|+||+|..|+++||++++..++. ..++..++.|++.++.++|.++.+.. ..+.+||+||+|+..||++||
T Consensus 239 ~~-~~~~~WD~k~~g~~~lla~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~TpgGl~~~~~wgslry 317 (469)
T PLN02345 239 GS-PTWFSWDDKLAGTQVLLSRLTFFGPKGASNTVNSGLQMYKKTAEAVMCGLLPDSPTATTSRTDGGLIWVSEWNALQH 317 (469)
T ss_pred CC-CceecCcchHHHHHHHHHHHhhccCccccchhhHHHHHHHHHHHHHHHHhcCCCCCccccccCCeeEEeCCCchHHH
Confidence 11 23589999999999999998654322 12345678899999999999887643 367899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc-cccccCCCCCChHHHHHHHHhccccccCCCCCCcceEEeeCCCCCCCccccccccccccC
Q 006835 341 VTSASFLATVYSDYLASAG-RDLKCSAGNVAPAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKV 419 (629)
Q Consensus 341 ~~n~a~l~~~y~~~~~~~~-~~l~~~~~~~~~~~y~~~A~~qidYiLG~Np~~~SyV~G~G~n~p~~pHHR~s~~~~~~~ 419 (629)
+++++||+++|++++.... ..+.|.......++|++||++|||||||+||+++|||||||.|+|++||||.||||.
T Consensus 318 a~~~afla~vya~~l~~~~~~~~~c~~~~~~~~~~~~fA~~QidYiLG~NP~~~SYvVGfG~n~P~~pHHR~As~p~--- 394 (469)
T PLN02345 318 AVNSAFLAVLYSDYMLSSGIAKLSCSGKSFKPSDLRKFAKSQADYILGKNPMKMSYLVGYGDKYPQYVHHRGASIPA--- 394 (469)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccCCCCCCHHHHHHHHHHHHHHHhcCCCCCcceEeecCCCCCCCcccccCCCCC---
Confidence 9999999999999886543 568888777889999999999999999999999999999999999999999999974
Q ss_pred CCCccccCCCccccccCCCCCCCcccceEecCCCCCCCcCcCCCccccccccccCchHHHHHHHHHhc
Q 006835 420 NPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNA 487 (629)
Q Consensus 420 ~~~~~~c~~g~~~~~~~~~~~~~~l~GaLVGGPn~~d~y~D~~~~y~~NEvaId~NA~lv~~la~l~~ 487 (629)
+..+.|.+||. |++.+.||||+|.||||||||.+|.|.|+|.+|++|||++++||+||++||+|+.
T Consensus 395 -~~~~~c~~g~~-~~~~~~pn~~vL~GAlVGGPd~~D~y~D~r~~y~~nEva~y~nA~~vg~la~l~~ 460 (469)
T PLN02345 395 -DAKTGCKDGFK-WLHSSEPNPNVATGALVGGPFQNDTFVDSRDNSMQNEPTTYNSALLVGLLSSLVT 460 (469)
T ss_pred -CCCcCCCCCcc-cccCCCCCCceeccceecCCCccCCccccccccccccceeehhhHHHHHHHHHhc
Confidence 35689999996 8999999999999999999999999999999999999998888999999999995
No 11
>PLN03009 cellulase
Probab=100.00 E-value=1.1e-118 Score=984.47 Aligned_cols=467 Identities=52% Similarity=0.949 Sum_probs=424.7
Q ss_pred ccchhhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceeecCCCccccccchhHHHHHHHHHHH
Q 006835 17 ALAGHDYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIE 96 (629)
Q Consensus 17 ~~~~~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~~Ky~~~~a~s~~~L~~a~~e 96 (629)
..++++|.++|++||+||++||||.+|+++++.||++|++.|+.+.++||+|||||||||+||++|+|+++++|+|+++|
T Consensus 23 ~~~~~~Y~~al~~Sl~Fy~aQRsG~lp~~~~~~Wr~ds~~~Dg~~~~~DlsGGwyDAGD~~Ky~~p~a~s~~~L~w~~~~ 102 (495)
T PLN03009 23 ESNQHDYSDALSKSILFFEGQRSGYLPNDQRMTWRANSGLSDGWTHNTDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVIE 102 (495)
T ss_pred ccCchhHHHHHHHHHHHHHHccCCCCCCCCCCCCcccCcCCCCCcccccCCCcceeCCCCceeccchHHHHHHHHHHHHH
Confidence 55778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHH
Q 006835 97 YGKQMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAA 176 (629)
Q Consensus 97 f~~~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAa 176 (629)
|++.+.+ +++||||||||||+|||||||+++|+||+|||++..||.+|++||+++.+|++|.|+..+|+|++++++|||
T Consensus 103 f~d~~~~-~~~~diLdeikw~~D~llkm~~~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~is~~~p~sd~a~~~AAa 181 (495)
T PLN03009 103 FGDLMPS-SELRNSLVAIRWATDYLLKTVSQPNRIFVQVGDPIADHNCWERPEDMDTPRTVYAVNAPNPASDVAGETAAA 181 (495)
T ss_pred hHhhCCc-cccHHHHHHHHHHHHHHHHcccCcCeEEEEeCCCCCCcccCcChhhcCCCCeEEEecCCCCccHHHHHHHHH
Confidence 9999975 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCC---ccccccccCCCCcccHHHHHHHHHHHHhCChhHHHH
Q 006835 177 MAAASIVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSI---TVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDY 253 (629)
Q Consensus 177 lA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~---~~~~~~Y~s~s~~~De~~wAAaeLy~aTG~~~Yl~~ 253 (629)
||+||||||++||+||++||++||++|+||+++|+.|.+.. +...++|++++++.||++|||+|||++|||++|+++
T Consensus 182 lA~as~vfk~~D~~YA~~ll~~Ak~ly~~a~~~~g~y~~~~~~~~g~~~~Y~~~s~~~DE~~WAAawLy~aTgd~~Yl~~ 261 (495)
T PLN03009 182 LAASSMAFRSSDPGYSETLLRNAIKTFQFADMYRGAYSDNDDIKDGVCPFYCDFDGYQDELLWGAAWLRRASGDDSYLNY 261 (495)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHHHHHHHHHcCCCccCCccccCccccCcCCcccccHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999997653 234568988778999999999999999999999999
Q ss_pred HhhcCcCCCCCCCCccccCCCcchHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhcC-CCCccccCCCCceec
Q 006835 254 LGKNGDSMGGTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGK-GSRNVQKTPGGLIFR 332 (629)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~-~~~~~~~tp~Gl~~~ 332 (629)
++.+...++.. ....+|+||+|..|+++|+++..+.+. ...++.|++.+|.++|.+..+ .++++++||+|+.|.
T Consensus 262 ~~~~~~~~~~~-~~~~~~~Wd~~~~g~~~lla~~~~~~~----~~~~~~~~~~ad~~~~~~~~~~~~~~v~~t~~g~~~~ 336 (495)
T PLN03009 262 IENNGETLGAN-DNINEFGWDNKHAGLNVLVSKEVLEGN----MYSLQSYKASADSFMCTLIPESSSSHVEYTPGGLIYK 336 (495)
T ss_pred HHHhhhhhcCC-CCCCCCCCccHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHHHHHhcccCCCCccccCCCCeEEe
Confidence 98654333221 122469999999999999887643221 123578999999999976554 567899999999999
Q ss_pred ccCchHhHHHHHHHHHHHHHHHHhhcccccccCCCCCChHHHHHHHHhccccccCCCCCCcceEEeeCCCCCCCcccccc
Q 006835 333 QRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRAS 412 (629)
Q Consensus 333 ~~Wgs~~~~~n~a~l~~~y~~~~~~~~~~l~~~~~~~~~~~y~~~A~~qidYiLG~Np~~~SyV~G~G~n~p~~pHHR~s 412 (629)
..|++++|+++++||+++|++++......++|.....+..+|+++|++|||||||+||+++|||||||+|+|++||||.+
T Consensus 337 ~~~sn~~~a~~aafl~l~yA~~l~~~~~~~~~~~~~~~~~~y~~~A~~Q~dYiLG~Np~~~SYVvGyG~~~p~~pHHR~a 416 (495)
T PLN03009 337 PGGSNLQHATTISFLLLVYANYLSRSSQSVNCGNLTIGPDSLRQQAKRQVDYILGDNPMGLSYMVGYSERYPQRIHHRGS 416 (495)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhhhcccccccccCcCCHHHHHHHHHHHHHHhcCCCCCCCceEecCCCCCcCchhhccc
Confidence 89999999999999999999998766666889888788999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccccCCCccccccCCCCCCCcccceEecCCCCCCCcCcCCCccccccccccCchHHHHHHHHHhccCC
Q 006835 413 SIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHG 490 (629)
Q Consensus 413 ~~~~~~~~~~~~~c~~g~~~~~~~~~~~~~~l~GaLVGGPn~~d~y~D~~~~y~~NEvaId~NA~lv~~la~l~~~~~ 490 (629)
+++.+..+|..+.|.+|+. |++.+.|+||+|+|+||||||.+|+|+|+|++|++||||||||||||++||+|....|
T Consensus 417 s~~~~~~~~~~~~c~~g~~-~~~~~~p~p~vl~GaLVGGP~~~d~y~D~r~~y~~NEvaidyNA~lv~~lA~l~~~~~ 493 (495)
T PLN03009 417 SLPSIKDHPEAIACKEGSV-YFNSSNPNPNVLVGAVVGGPGEDDSYEDDRDDFRKSEPTTYINAPFVGVLAYFAANPG 493 (495)
T ss_pred cCCccccccccccCccCcc-ccCCCCCCCCcccceEeeCCCCCCCCCcccccccccchhhhhhHHHHHHHHHHhcCCC
Confidence 9987766777789999996 8999999999999999999999999999999999999999999999999999997544
No 12
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=100.00 E-value=3.8e-103 Score=865.38 Aligned_cols=435 Identities=41% Similarity=0.730 Sum_probs=362.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCC-------cccccccceeecCCCccccccchhHHHHHHHHH
Q 006835 22 DYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKA-------SGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSI 94 (629)
Q Consensus 22 ~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~-------~~~DlsGGW~DAGD~~Ky~~~~a~s~~~L~~a~ 94 (629)
+|.++|++||+||++||||.+|+.++++||+++++.|+.. ..+||+|||||||||+||++|+++++++|+|++
T Consensus 1 ~Y~~~l~~sl~f~~~QR~G~~~~~~~~~w~~~s~~~d~~~~~~~~~~~~~DlsGGW~DAGD~~Ky~~~~a~s~~~L~~~~ 80 (444)
T PF00759_consen 1 NYKEALKKSLRFYYAQRSGTLPEDYAIPWRRDSCHTDGADSGPNNSGTTIDLSGGWYDAGDYGKYTFPMAYSVTMLAWSA 80 (444)
T ss_dssp -HHHHHHHHHHHHHHTBSBSTTTTTSGTTEB-BSTTTTCTCTSTTTSCEEB---SB-SSSSS-EEHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCcCCCcccccccCCcccCCCccccccccccccccccCceeecCCcceecccHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999888644 456999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHH
Q 006835 95 IEYGKQMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETA 174 (629)
Q Consensus 95 ~ef~~~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~A 174 (629)
+|+.+.++++|++||||||||||+|||||||++++.||+||||+..||..|.+||.++.+|+.+.+...+|+|++++++|
T Consensus 81 ~e~~~~~e~~~~~~dllde~kwg~D~llkm~~~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~A 160 (444)
T PF00759_consen 81 YEFFPAYESGNGIPDLLDEAKWGLDWLLKMQDSDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFA 160 (444)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHTBSCTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHH
T ss_pred HHhHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999988877788999999999
Q ss_pred HHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-ccccccccCCCCcccHHHHHHHHHHHHhCChhHHHH
Q 006835 175 AAMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSI-TVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDY 253 (629)
Q Consensus 175 AalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~-~~~~~~Y~s~s~~~De~~wAAaeLy~aTG~~~Yl~~ 253 (629)
||||+||||||++||+||++||++|+++|+||++||+.|.+.. +...++|++ +++.||++|||+|||++|||++|+++
T Consensus 161 AalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~~~~Y~~-~~~~De~~wAA~~Ly~aTg~~~Y~~~ 239 (444)
T PF00759_consen 161 AALAAASRVFKDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNGGGFYNS-SGYEDELAWAAAELYRATGDESYLDY 239 (444)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTTTTTSHC-S-SHHHHHHHHHHHHHHHT-HHHHHH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCcccC-CCcccHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999999999999999999999999999887654 567899998 89999999999999999999999999
Q ss_pred HhhcCcCCCCCCCCc-cccCCCcchHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceec
Q 006835 254 LGKNGDSMGGTGWGM-TEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKGSRNVQKTPGGLIFR 332 (629)
Q Consensus 254 ~~~~~~~~~~~~~~~-~~~~Wd~~~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~tp~Gl~~~ 332 (629)
++++...+....+.. ..++||++..+++++|+......+ ....+++++++.++.+++.........+.++|+|+.|.
T Consensus 240 a~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~la~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 317 (444)
T PF00759_consen 240 AKEYYDDLEASQWSNEWSFSWDNKAAGAQLLLAKLTNDDP--SRDAAREQYKSAADKFLNKWLNDGYGSVPYTPGGLAWI 317 (444)
T ss_dssp HHHHCCTSSBSTTSSSSSSCTTBSHHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHHHHSTTTBSEBCTTSSBES
T ss_pred HHHhHHhhcccccccccccchhhhhhhhhHHHHhcccchh--hhHHHHHHHHHHHHHHHHHHhhccCCCcccCccccccc
Confidence 998776543222222 378999999999999887743211 12235678888888888776655333477899999999
Q ss_pred ccCchHhHHHHHHHHHHHHHHHHhhcccccccCCCCCChHHHHHHHHhccccccCCCCCCcceEEeeCCCCCCCcccccc
Q 006835 333 QRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRAS 412 (629)
Q Consensus 333 ~~Wgs~~~~~n~a~l~~~y~~~~~~~~~~l~~~~~~~~~~~y~~~A~~qidYiLG~Np~~~SyV~G~G~n~p~~pHHR~s 412 (629)
+.||+++++++.+||+++|.++. ..++.+|+++|++|||||||+||+++|||||||+|+|++||||.+
T Consensus 318 ~~WGs~~~~~~~a~l~~~~~~~~------------~~~~~~y~~~a~~qldyiLG~Np~~~SyV~G~G~~~p~~pHHr~~ 385 (444)
T PF00759_consen 318 YEWGSNRYAANAAFLALAYAKYD------------LTGDQEYRDFAQSQLDYILGRNPFGQSYVTGYGENSPQHPHHRAS 385 (444)
T ss_dssp ESTTHHHHHHHHHHHHHHHHHTC------------HCHHHHHHHHHHHHHHHHHTTSTT--BSBTTSSSSBBSS-B-HHC
T ss_pred cCCCccHHHHHHHHHHHHHHhcc------------cCChHHHHHHHHHHhhhhcCcCCCCceeeecCCCCCCCCCcCchh
Confidence 99999999999999999998541 135789999999999999999999999999999999999999998
Q ss_pred ccccccCCCCccccCCCccccccCCCCCCCcccceEecCCCCCCCcCcCCCccccccccccCchHHHHHHH
Q 006835 413 SIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILA 483 (629)
Q Consensus 413 ~~~~~~~~~~~~~c~~g~~~~~~~~~~~~~~l~GaLVGGPn~~d~y~D~~~~y~~NEvaId~NA~lv~~la 483 (629)
+.. ++++.++..+.||+++|+|+||||||..++|+|+|.+|++|||||||||+||++||
T Consensus 386 s~~------------~~~~~~~~~~~pn~~~l~GalvGGP~~~~~y~D~~~~~~~nEvaid~NA~l~~~lA 444 (444)
T PF00759_consen 386 SAH------------CSWDDGINSPPPNPHVLYGALVGGPNSADSYVDDRSSYSTNEVAIDYNAPLVGALA 444 (444)
T ss_dssp HHH------------TCCSSTSTSSSS-SS--TT-BBS-SSTTS----STT-TTTHBBBHHHHHHHHHHHH
T ss_pred hcc------------ccccccCCCCCCCccCccccccCCCCccCCccCCCcccccchHHHHHHHHHHHHhC
Confidence 710 12334456788999999999999999999999999999999999999999999997
No 13
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=99.69 E-value=9e-17 Score=135.88 Aligned_cols=79 Identities=43% Similarity=0.865 Sum_probs=74.0
Q ss_pred eEEEEEEecccCCCCeeEEEEEEEEEeCCCCcccceEEEEecCCCCeeeeee-cccEEeCCCccccCCCCCeEEEEEEec
Q 006835 537 IAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTN-LGNAYGFPSWLNNLAAGKSLEFVYIHT 615 (629)
Q Consensus 537 ~~~~~~v~~sW~~g~~~~~q~~vtV~N~g~~~i~~w~i~~~~~~~~~W~~~~-~~~~~t~pswn~~i~~G~s~~FGfi~~ 615 (629)
++|+|+++++|.++|+.|+|++|+|+|+|.++|++..|.+++...++|+++. +++.++||+|...|+||++++||||..
T Consensus 1 i~i~q~~~~sW~~~g~~y~qy~v~I~N~~~~~I~~~~i~~~~l~~~iW~l~~~~~~~y~lPs~~~~i~pg~s~~FGYI~~ 80 (80)
T PF09478_consen 1 ITITQTLVNSWTENGQTYTQYDVTITNNGSKPIKSLKISIDNLYGSIWGLDKVSGNTYTLPSYQPTIKPGQSFTFGYISQ 80 (80)
T ss_pred CEEEEEEEeEEEeCCEEEEEEEEEEEECCCCeEEEEEEEECccchhheeEEeccCCEEECCccccccCCCCEEEEEEEeC
Confidence 5799999999999999999999999999999999999999854588999998 778999999999999999999999963
No 14
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=99.51 E-value=4.2e-14 Score=125.01 Aligned_cols=88 Identities=19% Similarity=0.341 Sum_probs=72.8
Q ss_pred eEEEEEEecccCCCCeeEEEEEEEEEeCCCCcccceEEEEecC----CCCeeeeee----cccEEeCCCccccCCCCCeE
Q 006835 537 IAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSISKL----YGPLWGLTN----LGNAYGFPSWLNNLAAGKSL 608 (629)
Q Consensus 537 ~~~~~~v~~sW~~g~~~~~q~~vtV~N~g~~~i~~w~i~~~~~----~~~~W~~~~----~~~~~t~pswn~~i~~G~s~ 608 (629)
|+++++++++|.+| ||++|+|+|+++++|++|+|+++.. ..++||.+- ...++++++||+.|+||++.
T Consensus 1 ctv~~~v~~~W~~G----f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~ 76 (101)
T PF00553_consen 1 CTVTYTVTNSWGGG----FQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSV 76 (101)
T ss_dssp EEEEEEEEEESSSE----EEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEE
T ss_pred CEEEEEEecccCCC----eEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeE
Confidence 89999999999999 9999999999999999999997632 345776632 34588999999999999999
Q ss_pred EEEEEecCCCCceeEEEEEe
Q 006835 609 EFVYIHTANAADVSVSAYTL 628 (629)
Q Consensus 609 ~FGfi~~~~~a~~~v~~~~~ 628 (629)
+|||++.++...-.|..|+|
T Consensus 77 ~~Gf~~~~~~~~~~p~~~t~ 96 (101)
T PF00553_consen 77 TFGFQASGSGSSAAPSTCTV 96 (101)
T ss_dssp EEEEEEEESSS--SESEEEE
T ss_pred EEEEEEeCCCCCCCCcEEEE
Confidence 99999988754445666665
No 15
>smart00637 CBD_II CBD_II domain.
Probab=99.08 E-value=4.4e-10 Score=97.58 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=58.7
Q ss_pred ecccCCCCeeEEEEEEEEEeCCCCcccceEEEEec----CCCCeeeeee----cccEEeCCCccccCCCCCeEEEEEEe-
Q 006835 544 TTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSISK----LYGPLWGLTN----LGNAYGFPSWLNNLAAGKSLEFVYIH- 614 (629)
Q Consensus 544 ~~sW~~g~~~~~q~~vtV~N~g~~~i~~w~i~~~~----~~~~~W~~~~----~~~~~t~pswn~~i~~G~s~~FGfi~- 614 (629)
.++|.+| ||++|+|+|+++.+|.+|+|++.. .+.++|+.+- ...+++.++||..|+||++++|||+.
T Consensus 1 ~~~W~~G----~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~~ 76 (92)
T smart00637 1 TSDWGSG----FTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQGK 76 (92)
T ss_pred CCcCCCC----EEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEec
Confidence 3689999 999999999999999999998653 2456788753 23588999999999999999999999
Q ss_pred cCC
Q 006835 615 TAN 617 (629)
Q Consensus 615 ~~~ 617 (629)
.|+
T Consensus 77 ~G~ 79 (92)
T smart00637 77 TGS 79 (92)
T ss_pred CCC
Confidence 553
No 16
>COG5297 CelA Cellobiohydrolase A (1,4-beta-cellobiosidase A) [Carbohydrate transport and metabolism]
Probab=98.79 E-value=1.3e-08 Score=105.47 Aligned_cols=82 Identities=20% Similarity=0.366 Sum_probs=70.1
Q ss_pred CCCCCCCCceEEEEEEecccCCCCeeEEEEEEEEEeCCCCcccceEEEEe------cCCCCeeeeeecccEEeCCCcccc
Q 006835 528 PAPASSSGAIAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSIS------KLYGPLWGLTNLGNAYGFPSWLNN 601 (629)
Q Consensus 528 ~~p~p~~~~~~~~~~v~~sW~~g~~~~~q~~vtV~N~g~~~i~~w~i~~~------~~~~~~W~~~~~~~~~t~pswn~~ 601 (629)
|+|.|+ ..++++.++.+.|..| |+-+|.|+|++++ -+.|++++. .+|+..|++++...+.+--.||.+
T Consensus 456 p~p~p~-~ni~~~i~~~~~w~~g----~cerv~vtnt~ss-~s~w~~t~~~kg~iq~lw~a~ws~~gd~l~asg~d~nkt 529 (544)
T COG5297 456 PNPDPT-KNITSSITVDSDWHTG----YCERVKVTNTGSS-RSSWTVTIPLKGTIQTLWSATWSLSGDKLIASGLDWNKT 529 (544)
T ss_pred CCCCCc-cCceeEEEeccccccc----ceeEEEeeccCCC-CcceEEEEeeccchhhhhhccccccCCeeeeeccccccc
Confidence 345565 6799999999999999 9999999999975 489999854 358889988887778888899999
Q ss_pred CCCCCeEEEEEEec
Q 006835 602 LAAGKSLEFVYIHT 615 (629)
Q Consensus 602 i~~G~s~~FGfi~~ 615 (629)
|+|+++.+|||+..
T Consensus 530 l~png~~efgfc~~ 543 (544)
T COG5297 530 LEPNGTTEFGFCAN 543 (544)
T ss_pred cCCCCcceeecccc
Confidence 99999999999863
No 17
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.20 E-value=0.013 Score=63.50 Aligned_cols=147 Identities=23% Similarity=0.167 Sum_probs=94.2
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhc-CCC-CeEEEEeCCCCCCCCCCCCCCCCC
Q 006835 75 DNVKFGLPMAFTVTMMSWSIIEYGKQMAASGELGHAMNAIKWGTDYFIKAH-PQP-NVLYGEVGDGNTDHNCWQRPEDMT 152 (629)
Q Consensus 75 D~~Ky~~~~a~s~~~L~~a~~ef~~~~~~~~~~~dlLde~kwgld~llk~~-~~~-g~~y~~vgd~~~dh~~w~~Pe~~~ 152 (629)
|..|++.-++..+..++.++.. .+.++.|+.++-+++||++-. +.+ |++++.+.. | +.|.+.
T Consensus 47 ~~~k~~~~~ar~i~~~a~a~~~--------~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~---~----g~~~~~- 110 (384)
T cd00249 47 DTDRRLWLQARQVYCFAVAYLL--------GWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQ---D----GRPVDA- 110 (384)
T ss_pred CCCCeEEEecHHHHHHHHHHHh--------cCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcC---C----CCCccc-
Confidence 4468888889998888876643 256889999999999999954 445 888888841 1 122211
Q ss_pred CcceeEEcCCCCcchHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcC----CC-CCCCCccccccccCC
Q 006835 153 TDRRAYKIDPSNPGSDLAGETAAAMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYR----GK-YDGSITVAQKYYRSI 227 (629)
Q Consensus 153 ~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~----~~-y~~~~~~~~~~Y~s~ 227 (629)
++....-+-++.|||.++++.. | .++|+.|++++++..++= +. +...... ...+.+
T Consensus 111 -----------~~~l~~~a~~l~ala~~~~at~--d----~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~-~~~~~~- 171 (384)
T cd00249 111 -----------TKDLYSHAFALLAAAQAAKVGG--D----PEARALAEETIDLLERRFWEDHPGAFDEADPG-TPPYRG- 171 (384)
T ss_pred -----------ccchHHHHHHHHHHHHHHHhcC--C----HHHHHHHHHHHHHHHHHhccCCCcccCCCCCC-CCCCCC-
Confidence 1112234567778888888875 3 367777777777777651 22 2111111 122222
Q ss_pred CCcccHHHHHHHHHHHHhCChhHHHHHhh
Q 006835 228 SGYNDELLWAAAWLYQASGNQHYLDYLGK 256 (629)
Q Consensus 228 s~~~De~~wAAaeLy~aTG~~~Yl~~~~~ 256 (629)
.+...-++.|.++|+.+||+..|++.+++
T Consensus 172 ~~~~~h~~~all~l~~~tgd~~~~~~A~~ 200 (384)
T cd00249 172 SNPHMHLLEAMLAAYEATGEQKYLDRADE 200 (384)
T ss_pred CChhHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 22223346789999999999999997754
No 18
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=96.37 E-value=0.034 Score=53.46 Aligned_cols=93 Identities=17% Similarity=0.327 Sum_probs=61.8
Q ss_pred CCCCCCCceEEEEEEecccCCCCeeE-EEEEEEEEeCCCCcc-cceEEEEecC------C--CCeee--eeec-------
Q 006835 529 APASSSGAIAIQQKLTTSWISNGKRY-YRYSTIVTNKSAKTL-KNLKLSISKL------Y--GPLWG--LTNL------- 589 (629)
Q Consensus 529 ~p~p~~~~~~~~~~v~~sW~~g~~~~-~q~~vtV~N~g~~~i-~~w~i~~~~~------~--~~~W~--~~~~------- 589 (629)
.+.|. ..+-|++.+ +.|.-|-.+| .+-.++|+|++..+| .|++|+++-. . ++=|+ +..+
T Consensus 29 ~~~P~-~~ldv~v~~-~gf~~GD~NYPI~Pkl~iTNns~~~iPGGt~~~FD~ptSa~~~~kdqSG~g~~vi~sght~~g~ 106 (180)
T PF06483_consen 29 SAMPT-EALDVSVSF-TGFKLGDSNYPINPKLTITNNSGQTIPGGTEFEFDYPTSAPDNAKDQSGFGLKVISSGHTAAGN 106 (180)
T ss_pred CCCCC-ceEEEEEEe-CCcccCCCCCCcCCcEEEEcCCCcccCCccEEEEccccCCccccccccCCcEEEEecCCcccCC
Confidence 34555 567777774 4576554343 278999999999999 6999996521 0 11122 2111
Q ss_pred ----------ccEEeCCCccccCCCCCeEEEEEEecC---CCCceeEE
Q 006835 590 ----------GNAYGFPSWLNNLAAGKSLEFVYIHTA---NAADVSVS 624 (629)
Q Consensus 590 ----------~~~~t~pswn~~i~~G~s~~FGfi~~~---~~a~~~v~ 624 (629)
.+.+++|+|+ +|+||+|+++-++--- .|+|++|+
T Consensus 107 NiGGL~gdfHrvs~tlp~wq-slapG~s~~~~~~YyLPiSgPsN~tv~ 153 (180)
T PF06483_consen 107 NIGGLKGDFHRVSFTLPAWQ-SLAPGASVELDMVYYLPISGPSNFTVN 153 (180)
T ss_pred cccccCCceEEEEEECCCcc-ccCCCCEEEEeEEEEeccCCCceEEEE
Confidence 1478999996 6999999999988332 27777775
No 19
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=95.16 E-value=0.2 Score=52.41 Aligned_cols=112 Identities=22% Similarity=0.238 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHhhhcccC
Q 006835 108 GHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFRHS 187 (629)
Q Consensus 108 ~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k~~ 187 (629)
|.++..+|=-+|||++-+..+|-+= ..+....+|-|..... .|| +|-.||.|+.||+
T Consensus 241 ~~~~~dVK~sldym~~~rfpsGNyP--------------~s~~~~~drLVhWcHG-ApG------v~~~L~kAy~VF~-- 297 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFPSGNYP--------------SSEGNKRDRLVHWCHG-APG------VAYTLAKAYQVFK-- 297 (403)
T ss_pred hhHHHhhhhHHHHHHHccCCCCCCC--------------cccCCCcceeeeeccC-Cch------HHHHHHHHHHHhh--
Confidence 4478889999999999865544111 1133445677766542 243 6778999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCccccccccCCCCcccHHHHHHHHHHHHhCChhHHHHHhhc
Q 006835 188 DPAYSSELLRHAYQLFDFADKY--RGKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDYLGKN 257 (629)
Q Consensus 188 d~~~A~~~L~~A~~~~~~a~~~--~~~y~~~~~~~~~~Y~s~s~~~De~~wAAaeLy~aTG~~~Yl~~~~~~ 257 (629)
..+|-+...++|+-.|+..--. +|..+.. ++. ..+=.-|||+|+|.+||-.+++.
T Consensus 298 Eekyl~aa~ecadvVW~rGlLkkg~GichGv---aGN------------aYvFLsLyRLT~d~kYlyRA~kF 354 (403)
T KOG2787|consen 298 EEKYLEAAMECADVVWKRGLLKKGVGICHGV---AGN------------AYVFLSLYRLTGDMKYLYRAKKF 354 (403)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCcccccc---cCc------------hhhhHhHHHHcCcHHHHHHHHHH
Confidence 5778888899999999876544 3444321 222 23456799999999999887664
No 20
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.095 Score=60.12 Aligned_cols=86 Identities=22% Similarity=0.176 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCccccccccCCCCcccHHHHHHHHHHHH
Q 006835 167 SDLAGETAAAMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYR--GKYDGSITVAQKYYRSISGYNDELLWAAAWLYQA 244 (629)
Q Consensus 167 s~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~--~~y~~~~~~~~~~Y~s~s~~~De~~wAAaeLy~a 244 (629)
|+-.+.+++|||.|+|++.+ .++++.|+++.+|..++- +......-.+...|.....+.--++||.+.||.+
T Consensus 410 t~wNglmi~aLa~a~~~~~d------~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~ 483 (667)
T COG1331 410 TDWNGLMIAALAEAGRVLGD------PEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEA 483 (667)
T ss_pred eccHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchhHHHHHHHHHHHHHh
Confidence 44578999999999999986 578888999999887651 1100000001111211122233588999999999
Q ss_pred hCChhHHHHHhhcC
Q 006835 245 SGNQHYLDYLGKNG 258 (629)
Q Consensus 245 TG~~~Yl~~~~~~~ 258 (629)
|++.+||+.+++..
T Consensus 484 t~d~~yL~~A~~L~ 497 (667)
T COG1331 484 TGDLAYLEKAIELA 497 (667)
T ss_pred hCcHHHHHHHHHHH
Confidence 99999999987744
No 21
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=94.03 E-value=0.5 Score=51.13 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=74.3
Q ss_pred HHHHHHHHHH-hcC-CCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHhhhcccCCHHH
Q 006835 114 IKWGTDYFIK-AHP-QPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFRHSDPAY 191 (629)
Q Consensus 114 ~kwgld~llk-~~~-~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k~~d~~~ 191 (629)
++-.++|+++ +.+ +.|+|+..+.. | +.|.+. .|.+|. .+.+.-++|.+++++.+
T Consensus 16 ~~~~~~fw~~~~~d~~~gg~~~~l~~---~----g~~~~~--~k~~~~----------~ar~i~~~a~a~~~~~~----- 71 (384)
T cd00249 16 LEDLLPFWLEAGLDREAGGFFECLDR---D----GQPFDT--DRRLWL----------QARQVYCFAVAYLLGWR----- 71 (384)
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEECC---C----CCCCCC--CCeEEE----------ecHHHHHHHHHHHhcCC-----
Confidence 3556777766 443 46889998853 2 345432 344664 35788999999999853
Q ss_pred HHHHHHHHHHHHHHHHhcC-----CCCCCCCccccccccCCCCccc--HHHHHHHHHHHHhCChhHHHHHhh
Q 006835 192 SSELLRHAYQLFDFADKYR-----GKYDGSITVAQKYYRSISGYND--ELLWAAAWLYQASGNQHYLDYLGK 256 (629)
Q Consensus 192 A~~~L~~A~~~~~~a~~~~-----~~y~~~~~~~~~~Y~s~s~~~D--e~~wAAaeLy~aTG~~~Yl~~~~~ 256 (629)
.++|+.|++.++|..++- |.|.......+..........| -+++|.++||++||++.|++.+++
T Consensus 72 -~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~ 142 (384)
T cd00249 72 -PEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEE 142 (384)
T ss_pred -hhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 457899999999999861 3222111100001101011122 356899999999999999998765
No 22
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=93.67 E-value=0.47 Score=54.15 Aligned_cols=126 Identities=16% Similarity=0.106 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCC-CCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHhhhcc
Q 006835 107 LGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGN-TDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFR 185 (629)
Q Consensus 107 ~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~-~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k 185 (629)
=+.+++.+..-+|+|+++|.++|.+-...-... .....|.+ + + -..|. .+.+..+|-..++.-.
T Consensus 78 D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~-~-~---he~Y~----------~~~ll~gl~~~y~~tG 142 (520)
T PF07944_consen 78 DPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAP-D-M---HELYC----------LGKLLEGLIDYYEATG 142 (520)
T ss_pred CHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCC-C-c---cceeh----------HhHHHHHHHHHHHHHC
Confidence 367889999999999999998884422221110 01124444 1 1 11342 2334444444444433
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCCCCcccHHHHHHHHHHHHhCChhHHHHHhhcC
Q 006835 186 HSDPAYSSELLRHAYQLFDFADKYRGKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDYLGKNG 258 (629)
Q Consensus 186 ~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~~~~~~~Y~s~s~~~De~~wAAaeLy~aTG~~~Yl~~~~~~~ 258 (629)
+ +++|+.|+++-+|....-..+.. .+.....++ +. -++..+-++||+.|||++||+.++...
T Consensus 143 ~------~~~L~v~~k~ad~~~~~~~~~~~-~~~~~~~~~---~~-~~i~~~l~~LY~~Tgd~~yL~lA~~f~ 204 (520)
T PF07944_consen 143 N------ERALDVATKLADWVYRRLSRLGP-EPGQKMGYP---EH-GGINEALVRLYEITGDERYLDLAEYFV 204 (520)
T ss_pred c------HHHHHHHHHHHHHHHHHhccCCH-HHhhccccc---cc-chHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2 58999999998888322111111 000111121 12 356689999999999999999887643
No 23
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=93.30 E-value=0.99 Score=49.22 Aligned_cols=126 Identities=22% Similarity=0.307 Sum_probs=64.4
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCC---CeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHh
Q 006835 105 GELGHAMNAIKWGTDYFIKAHPQP---NVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAAS 181 (629)
Q Consensus 105 ~~~~dlLde~kwgld~llk~~~~~---g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As 181 (629)
...+..|+.++--.+++++-.++. |+++=++.+ .+ .-.-|+ +..| .+.++ .+++
T Consensus 109 ~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~-----------~~---~~~~~K----na~s--N~~~~---~laa 165 (370)
T PF03663_consen 109 SDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDD-----------TN---SGYDYK----NAIS--NGPAA---QLAA 165 (370)
T ss_dssp ----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET------------------TEEEEE----EHHH--HHHHH---HHHH
T ss_pred chHHHHHHHHHHHHHHHHHhcCCccCCCCccccccc-----------cC---CCCCcc----cccc--hHHHH---HHHH
Confidence 456699999999999999766653 555444321 01 122344 2222 22233 3334
Q ss_pred hhcccCCHHHHHHHHHHHHHHHHHHHh-c---C--CCCCCCCccc--cccccCCCCc---ccHHHHHHHHHHHHhCCh-h
Q 006835 182 IVFRHSDPAYSSELLRHAYQLFDFADK-Y---R--GKYDGSITVA--QKYYRSISGY---NDELLWAAAWLYQASGNQ-H 249 (629)
Q Consensus 182 ~v~k~~d~~~A~~~L~~A~~~~~~a~~-~---~--~~y~~~~~~~--~~~Y~s~s~~---~De~~wAAaeLy~aTG~~-~ 249 (629)
|+++-.+. .++|+.|++.|+|... + + +.+.+.+... +... +...+ .--++-|+++||++|+++ +
T Consensus 166 rL~~~t~~---~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~-~~~~~TYNqG~~l~a~~~Ly~~T~~~~~ 241 (370)
T PF03663_consen 166 RLYRITGD---QTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNI-NKTKWTYNQGVFLGAAAYLYNATNDEQT 241 (370)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B--TT---HHHHHHHHHHHHHHHHHH--H-H
T ss_pred HHHHhcCC---hHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcC-CCceechHHHHHHHHHHHHHHhcCCccH
Confidence 55443332 2699999999999998 2 3 2333322111 1111 00111 124678999999999777 9
Q ss_pred HHHHHhhc
Q 006835 250 YLDYLGKN 257 (629)
Q Consensus 250 Yl~~~~~~ 257 (629)
||+.+.+.
T Consensus 242 yl~~A~~l 249 (370)
T PF03663_consen 242 YLDRAEKL 249 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988663
No 24
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=89.20 E-value=1.5 Score=47.09 Aligned_cols=120 Identities=28% Similarity=0.368 Sum_probs=67.7
Q ss_pred ChhHHHHHHHHHHHHHHHhcC--CCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHhhh
Q 006835 106 ELGHAMNAIKWGTDYFIKAHP--QPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIV 183 (629)
Q Consensus 106 ~~~dlLde~kwgld~llk~~~--~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As~v 183 (629)
+.++.|+-++.+++||.+... +.|++|+.+-++ + |.+. .+..| .++-+.||.|. .
T Consensus 37 g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~-------~-~~~~--~~~~Y------------~~af~l~ala~-~ 93 (346)
T PF07221_consen 37 GRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDG-------G-PLDP--QKDLY------------DQAFALLALAE-A 93 (346)
T ss_dssp TSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETT-------E-EEE----EEHH------------HHHHHHHHHHH-H
T ss_pred CchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCC-------C-CCcc--ccchH------------HHHHHHHHHHH-H
Confidence 488899999999999998753 457777776321 1 1110 11122 12233444333 2
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHhc---C--CCCCCCCcc-ccccccCCCCccc--HHHHHHHHHHHHhCChhHHHHHh
Q 006835 184 FRHSDPAYSSELLRHAYQLFDFADKY---R--GKYDGSITV-AQKYYRSISGYND--ELLWAAAWLYQASGNQHYLDYLG 255 (629)
Q Consensus 184 ~k~~d~~~A~~~L~~A~~~~~~a~~~---~--~~y~~~~~~-~~~~Y~s~s~~~D--e~~wAAaeLy~aTG~~~Yl~~~~ 255 (629)
...-++ +.++.|++++++.+++ | +.|....+. .... ....+ -++-|.+.||++|++..|++.++
T Consensus 94 ~~tg~~----~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~----r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~ 165 (346)
T PF07221_consen 94 RATGDP----EALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPP----RGQNPHMHLLEAFLALYEATGDPRYLDRAE 165 (346)
T ss_dssp HCTT-T----THHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCB----EEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCh----hHHHHHHHHHHHHHHHhcccccCcceeccCCccccC----CCCChhHHHHHHHHHHHHhccCHHHHHHHH
Confidence 222344 4578888888888876 2 112211000 0000 01123 35678899999999999999876
Q ss_pred h
Q 006835 256 K 256 (629)
Q Consensus 256 ~ 256 (629)
+
T Consensus 166 ~ 166 (346)
T PF07221_consen 166 E 166 (346)
T ss_dssp H
T ss_pred H
Confidence 5
No 25
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=86.97 E-value=3.3 Score=45.20 Aligned_cols=29 Identities=34% Similarity=0.627 Sum_probs=20.3
Q ss_pred CcccHHHH---HHHHHHHHhCCh-----hHHHHHhhc
Q 006835 229 GYNDELLW---AAAWLYQASGNQ-----HYLDYLGKN 257 (629)
Q Consensus 229 ~~~De~~w---AAaeLy~aTG~~-----~Yl~~~~~~ 257 (629)
.|.||..| |.+.+|+.||+. +||+.+++.
T Consensus 85 ~~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i 121 (370)
T PF03663_consen 85 RYYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEI 121 (370)
T ss_dssp -BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHH
T ss_pred CccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHH
Confidence 35677665 778889999999 999987754
No 26
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=86.75 E-value=11 Score=40.06 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=19.0
Q ss_pred CCeEEEEEEecCCCCceeEEEEEe
Q 006835 605 GKSLEFVYIHTANAADVSVSAYTL 628 (629)
Q Consensus 605 G~s~~FGfi~~~~~a~~~v~~~~~ 628 (629)
|-+.+|.|......-.+.+++++|
T Consensus 172 ~~~L~f~F~~~~~~~~~~L~~v~l 195 (306)
T PF01299_consen 172 GWNLTFTFTKNNTSNSFYLSSVSL 195 (306)
T ss_pred ccEEEEEEEecCCCCcEEEEEEEE
Confidence 458899998877667888888876
No 27
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=82.83 E-value=43 Score=39.29 Aligned_cols=159 Identities=11% Similarity=0.134 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceeecCCCcc-c--cccchhHHHHHHHHHHHH
Q 006835 21 HDYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVK-F--GLPMAFTVTMMSWSIIEY 97 (629)
Q Consensus 21 ~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~~K-y--~~~~a~s~~~L~~a~~ef 97 (629)
..+.+.+++++.|...++. . .....|+.... .+ -.|||-= .+..+ | +--++.++..|+ ..
T Consensus 325 ~~~~~~l~ka~~wL~~~Q~-~---~~~gdw~~~~~-------~~-~~GGW~f-s~~~~~~pd~d~Ta~~l~AL~----~~ 387 (634)
T cd02892 325 PEFDPALKKALDWLLESQI-L---DNPGDWKVKYR-------HL-RKGGWAF-STANQGYPDSDDTAEALKALL----RL 387 (634)
T ss_pred ccchHHHHHHHHHHHHHHc-C---CCCCchhhhCC-------CC-CCCCCCC-CCCCCCCCCcCchHHHHHHHH----Hh
Confidence 3688899999999987776 1 11223432110 00 1577721 11111 1 112445544443 21
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEE-EeCCCCCCCCCC---CCCCCCCCcceeEEcCCCCcchHHHHHH
Q 006835 98 GKQMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYG-EVGDGNTDHNCW---QRPEDMTTDRRAYKIDPSNPGSDLAGET 173 (629)
Q Consensus 98 ~~~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~-~vgd~~~dh~~w---~~Pe~~~~~R~~y~~~~~~pgs~~~~~~ 173 (629)
...... +.+...+.++=++|||++||..+|++.. ..+. .+ .| ..|-++... . .+ +.+..+.|+.+
T Consensus 388 ~~~~~~--~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~---~~-~~~~~~~p~e~~g~-~--~~--d~~~~~~Ta~~ 456 (634)
T cd02892 388 QELPPF--GEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDN---TY-HWLENLNPFEDFGD-I--MI--DPPYVECTGSV 456 (634)
T ss_pred hccCCc--chhhHHHHHHHHHHHHHhccCCCCCEeeecCCC---ch-hhHhhcCchhhhcc-c--cc--CCCCcchHHHH
Confidence 111111 2233346788899999999999998742 1111 11 11 123221100 0 11 12445667766
Q ss_pred HHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcCC
Q 006835 174 AAAMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYRG 211 (629)
Q Consensus 174 AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~ 211 (629)
..+|+...+.+.. +-++..+..+++-+|..+++.
T Consensus 457 l~aL~~~~~~~~~----~r~~i~~~i~rAv~~L~~~Q~ 490 (634)
T cd02892 457 LEALGLFGKLYPG----HRREIDPAIRRAVKYLLREQE 490 (634)
T ss_pred HHHHHHhcccCcc----hHHHHHHHHHHHHHHHHHccC
Confidence 6667665544332 222566677888888888753
No 28
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=82.23 E-value=52 Score=38.67 Aligned_cols=90 Identities=9% Similarity=0.039 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHhhhcccCCHHH
Q 006835 112 NAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFRHSDPAY 191 (629)
Q Consensus 112 de~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k~~d~~~ 191 (629)
+.++=++|||+.||..+|++..--.+....-..+..|.+.-.. ..+ +.+..+.|+.+.-+|+..... ++.+
T Consensus 400 ~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~---~~~--d~~~~d~Ta~~l~aL~~~~~~----~~~~ 470 (634)
T TIGR03463 400 ARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFST---CMT--DVSYVECTSSCLQALAAWRKH----HPHV 470 (634)
T ss_pred HHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcc---ccc--CCCcCcHHHHHHHHHHHHhhc----Ccch
Confidence 4677799999999999987754322211110112334332100 111 124456677666677765432 2322
Q ss_pred -HHHHHHHHHHHHHHHHhcC
Q 006835 192 -SSELLRHAYQLFDFADKYR 210 (629)
Q Consensus 192 -A~~~L~~A~~~~~~a~~~~ 210 (629)
+.++.++.+++-+|..+.+
T Consensus 471 ~~~~i~~ai~rav~~L~~~Q 490 (634)
T TIGR03463 471 PDGRITRAISRGVRFLRSRQ 490 (634)
T ss_pred hhhHHHHHHHHHHHHHHHhc
Confidence 3455556667777877764
No 29
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.90 E-value=15 Score=41.17 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCeE--EEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHH-HHHHHHHHHhh
Q 006835 106 ELGHAMNAIKWGTDYFIKAHPQPNVL--YGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAG-ETAAAMAAASI 182 (629)
Q Consensus 106 ~~~dlLde~kwgld~llk~~~~~g~~--y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~-~~AAalA~As~ 182 (629)
+-|.|..-|.--+|=+-+.|+++|.+ |.|. ..+..+|+.=.+ -+..|- ++ .+++++| +.+
T Consensus 83 ~dp~Lekr~D~vi~~~a~~QdedGYl~~~~q~---~~pe~Rw~nlr~---~HelY~----------aghLieg~va-~~q 145 (589)
T COG3533 83 GDPELEKRIDEVVEELARAQDEDGYLGGWFQA---DFPEERWGNLRP---NHELYC----------AGHLIEGGVA-AHQ 145 (589)
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCcccceeec---cCchhhhhcccc---chHHHH----------hHHHHhhhhH-HHH
Confidence 34555555666678888999888743 2222 233334432111 122331 22 2333332 122
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCCCCcccHHHHHHHHHHHHhCChhHHHHHhhcC
Q 006835 183 VFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDYLGKNG 258 (629)
Q Consensus 183 v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~~~~~~~~~Y~s~s~~~De~~wAAaeLy~aTG~~~Yl~~~~~~~ 258 (629)
+= . -.++|.-+.++=+++.+-=+.-.+ ....|+. .-|+..|-++||+.||+++||+.++...
T Consensus 146 aT-G-----kr~lldV~~rlADhi~tvfgp~~~----q~~g~~g----H~eielAl~~Ly~~Tg~~rYL~LA~~Fi 207 (589)
T COG3533 146 AT-G-----KRRLLDVVCRLADHIATVFGPEED----QVPGYCG----HPEIELALAELYRLTGDQRYLDLARRFI 207 (589)
T ss_pred hh-C-----cchHHHHHHHHHHhhhhhcCcccc----ccccccC----CCchhHHHHHHHHHhcChHHHHHHHHHH
Confidence 11 1 247788888877777664221111 1223444 2367889999999999999999887643
No 30
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=75.91 E-value=41 Score=35.21 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCChhHHHHHhh
Q 006835 233 ELLWAAAWLYQASGNQHYLDYLGK 256 (629)
Q Consensus 233 e~~wAAaeLy~aTG~~~Yl~~~~~ 256 (629)
-.+|+-+.||+.|++++|++.+++
T Consensus 143 Gi~~~L~~l~~~t~d~~~l~~A~~ 166 (321)
T cd04791 143 GIALFLLRLYKATGDSRYLELAEE 166 (321)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHH
Confidence 368999999999999999997765
No 31
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=74.92 E-value=10 Score=31.42 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=31.9
Q ss_pred EEEEEEEEeCCCCcccceEEEEecCCCCeeeeeecccEEeCCCccccCCCCCeEEEEEEecCC
Q 006835 555 YRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLEFVYIHTAN 617 (629)
Q Consensus 555 ~q~~vtV~N~g~~~i~~w~i~~~~~~~~~W~~~~~~~~~t~pswn~~i~~G~s~~FGfi~~~~ 617 (629)
..+.++|+|.|..++.+..++++- -.=|.+.....++. .|+||++.++-|-++-+
T Consensus 7 ~~~~~tv~N~g~~~~~~v~~~l~~--P~GW~~~~~~~~~~------~l~pG~s~~~~~~V~vp 61 (78)
T PF10633_consen 7 VTVTLTVTNTGTAPLTNVSLSLSL--PEGWTVSASPASVP------SLPPGESVTVTFTVTVP 61 (78)
T ss_dssp EEEEEEEE--SSS-BSS-EEEEE----TTSE---EEEEE--------B-TTSEEEEEEEEEE-
T ss_pred EEEEEEEEECCCCceeeEEEEEeC--CCCccccCCccccc------cCCCCCEEEEEEEEECC
Confidence 678899999999899999998774 12455322222222 79999999988876643
No 32
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=74.73 E-value=52 Score=36.02 Aligned_cols=124 Identities=25% Similarity=0.351 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCC-CeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHhhhcc
Q 006835 107 LGHAMNAIKWGTDYFIKAHPQP-NVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFR 185 (629)
Q Consensus 107 ~~dlLde~kwgld~llk~~~~~-g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k 185 (629)
.++-++.+.+|++||-+.++.. |+.|.-+.. | +.|.+.+.+ +| ..+=+.||+|+.+
T Consensus 73 ~~~~~~~v~hG~~y~~~~~R~~~gg~~~~~~~---d----g~~~Dat~d--~Y------------~haFallA~A~~a-- 129 (388)
T COG2942 73 RGPWLDAVAHGIAYLARVGRDPEGGWYFALDN---D----GGPVDATKD--LY------------GHAFALLAAAHAA-- 129 (388)
T ss_pred CccHHHHHHhHHHHHHhcCcCCCCCeEEEecC---C----CCcccccHh--HH------------HHHHHHHHHHHHH--
Confidence 5569999999999999998743 433333321 1 345444322 23 2334455555532
Q ss_pred cCCHHHHHHHHHHHHHHHHHHH--h-cC-CCCCCCCccccccccCCCCcccHHHHHH-HHHHHHhCChhHHHHHhhc
Q 006835 186 HSDPAYSSELLRHAYQLFDFAD--K-YR-GKYDGSITVAQKYYRSISGYNDELLWAA-AWLYQASGNQHYLDYLGKN 257 (629)
Q Consensus 186 ~~d~~~A~~~L~~A~~~~~~a~--~-~~-~~y~~~~~~~~~~Y~s~s~~~De~~wAA-aeLy~aTG~~~Yl~~~~~~ 257 (629)
...+.-|+++++.|.++++--. . || +.|....+...+. +++.. ..+..| .-=|.+||+..|++.+.+.
T Consensus 130 ~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl-~sNp~---MHl~EA~LA~~e~~~~~~~~~~A~~i 202 (388)
T COG2942 130 TAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPL-GSNPH---MHLLEAMLAAYEATGEKTWLDRADRI 202 (388)
T ss_pred hcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCcc-CCCcc---hHHHHHHHHHHhccCchhHHHHHHHH
Confidence 2356678899998888887432 2 33 2233222222222 33121 222222 2236679999999987653
No 33
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=69.11 E-value=2.6 Score=49.14 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=19.7
Q ss_pred CChHHHHHHHHhccccccCCCC----CCcceEEeeC
Q 006835 369 VAPAELLGFAKSQVDYILGDNP----RATSYMVGYG 400 (629)
Q Consensus 369 ~~~~~y~~~A~~qidYiLG~Np----~~~SyV~G~G 400 (629)
+.+++-...=++.+|+|.|--- .|.=|+.-|-
T Consensus 645 ~Tpqea~a~y~a~vnf~n~~Gh~~is~GPf~L~ayd 680 (872)
T COG3889 645 FTPQEAYAAYVAAVNFINGYGHAQISNGPFYLEAYD 680 (872)
T ss_pred eCHHHHHHHHHHHHHHHhccCceEeccCceEEEEeC
Confidence 4556666666778888887542 3444555554
No 34
>PRK09752 adhesin; Provisional
Probab=66.94 E-value=4.5 Score=49.57 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=7.8
Q ss_pred ceEecCCCCCCCcCc
Q 006835 446 GAVVGGPDAYDNFGD 460 (629)
Q Consensus 446 GaLVGGPn~~d~y~D 460 (629)
|.+|.|+-....|.+
T Consensus 893 g~VvAGAYeY~L~k~ 907 (1250)
T PRK09752 893 GYVNMGAYDYTLVED 907 (1250)
T ss_pred CcEEeeeEEEEEEeC
Confidence 356666655444443
No 35
>PF15324 TALPID3: Hedgehog signalling target
Probab=66.27 E-value=6.7 Score=47.21 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=9.5
Q ss_pred ccccccCCCCCcccCCC
Q 006835 495 LLPVIVPAATPVVTKPS 511 (629)
Q Consensus 495 ~~~~~~~~~~~~~~~~~ 511 (629)
|.|+.+|.+||++++++
T Consensus 944 ~TPvpTPqpTPP~SP~s 960 (1252)
T PF15324_consen 944 CTPVPTPQPTPPQSPPS 960 (1252)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 45555566666666433
No 36
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=65.38 E-value=5.4 Score=38.59 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.1
Q ss_pred ccCCC-CeeEEEEEEEEEeCCCCccc
Q 006835 546 SWISN-GKRYYRYSTIVTNKSAKTLK 570 (629)
Q Consensus 546 sW~~g-~~~~~q~~vtV~N~g~~~i~ 570 (629)
-|.+| |..||.++..++|.|+-++.
T Consensus 158 lwsegegavfyrvdlhftnlgtppld 183 (300)
T PF05750_consen 158 LWSEGEGAVFYRVDLHFTNLGTPPLD 183 (300)
T ss_pred hhccCCceeEEEeeeeeccCCCCCCC
Confidence 37777 78999999999999987654
No 37
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=64.30 E-value=9.1 Score=43.10 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=20.3
Q ss_pred HHhccccccCCCC----CCcceEEeeCCCCCCCcccccccc
Q 006835 378 AKSQVDYILGDNP----RATSYMVGYGNNYPQRVHHRASSI 414 (629)
Q Consensus 378 A~~qidYiLG~Np----~~~SyV~G~G~n~p~~pHHR~s~~ 414 (629)
+.+-|.=.||.|= -+.||+++ -.||-....
T Consensus 193 vlSrlEgrl~~Ni~LeKenIsYlSs-------gLhHv~tEl 226 (574)
T PF07462_consen 193 VLSRLEGRLGKNINLEKENISYLSS-------GLHHVFTEL 226 (574)
T ss_pred HHHHHHHHhccccccchhhhhhhhh-------hHHHHHHHH
Confidence 4566677788874 35788865 368877654
No 38
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=62.15 E-value=1.1e+02 Score=32.52 Aligned_cols=158 Identities=11% Similarity=0.131 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCC-CCCCCCCCCccccccccee--ecCCCccccccchhHHHHHHHHHHHH
Q 006835 21 HDYGQALSKSILFFEAQRSGYLPHNQRVTWRA-NSGLNDGKASGVDLVGGYY--DAGDNVKFGLPMAFTVTMMSWSIIEY 97 (629)
Q Consensus 21 ~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~-~s~l~d~~~~~~DlsGGW~--DAGD~~Ky~~~~a~s~~~L~~a~~ef 97 (629)
..|.+.+.+++.|...++--..+.. |.. -.+ .-.|||= +.+..-..+.-+++++..|+ .+.++
T Consensus 42 ~~~~~~~~ka~~~l~~~q~~~~~~~----~~~~~~~---------~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~-~~~~~ 107 (348)
T cd02889 42 PEFDPALKKALEWLLKSQIRDNPDD----WKVKYRH---------LRKGGWAFSTANQGYPDSDDTAEALKALL-RLQKK 107 (348)
T ss_pred CccCHHHHHHHHHHHhcCCCCCCCc----hhhcCCC---------CCCCcCcccCcCCCCCCCCChHHHHHHHH-Hhhcc
Confidence 4789999999999877552112211 110 011 1234442 11110011224566655554 22221
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCC-CCCCCCCCcceeEEcCCCCcchHHHHHHHHH
Q 006835 98 GKQMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCW-QRPEDMTTDRRAYKIDPSNPGSDLAGETAAA 176 (629)
Q Consensus 98 ~~~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w-~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAa 176 (629)
.+ .+.....+.++=+++||+++|.++|+|..--.+ . +..| ..+.++..... .+ .+..+.++.+..+
T Consensus 108 ~~-----~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~--~-~~~~~~~~~~~~~~~~---~~--~~~~~~Ta~~l~a 174 (348)
T cd02889 108 PP-----DGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPD--N-TYKYLELIPEVDGDIM---ID--PPYVECTGSVLEA 174 (348)
T ss_pred Cc-----ccchhhHHHHHHHHHHHHHhccCCCCEeeecCC--c-cHHHHhcCchhhcCCc---cC--CCCcchHHHHHHH
Confidence 11 134455678888999999999999887421110 0 1111 00101110100 11 1223456666666
Q ss_pred HHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhc
Q 006835 177 MAAASIVFRHSDPAYSSELLRHAYQLFDFADKY 209 (629)
Q Consensus 177 lA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~ 209 (629)
|+.+.+.... ..+++.+..+++.+|..+.
T Consensus 175 L~~~~~~~~~----~~~~~~~~i~~a~~~L~~~ 203 (348)
T cd02889 175 LGLFGKLYPE----HRREIDPAIRRAVKYLERE 203 (348)
T ss_pred HHHhhhcCCc----hHHHHHHHHHHHHHHHHHh
Confidence 6665554322 2235666777778887765
No 39
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=61.33 E-value=43 Score=31.36 Aligned_cols=62 Identities=24% Similarity=0.277 Sum_probs=40.5
Q ss_pred EEEEEEEEeCCCCcccceEEEEecCCCCeeeeee--cccEEeCCCcccc-------CCCCCeEEEEEEecCC
Q 006835 555 YRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTN--LGNAYGFPSWLNN-------LAAGKSLEFVYIHTAN 617 (629)
Q Consensus 555 ~q~~vtV~N~g~~~i~~w~i~~~~~~~~~W~~~~--~~~~~t~pswn~~-------i~~G~s~~FGfi~~~~ 617 (629)
+.++++|+|.|..++++-+|+++- .+.-+.... .......-.+... |+||++.+|-++..-.
T Consensus 64 ~~v~g~V~N~g~~~i~~c~i~~~l-~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~~ 134 (149)
T PF09624_consen 64 FYVDGTVTNTGKFTIKKCKITVKL-YNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPYP 134 (149)
T ss_pred EEEEEEEEECCCCEeeEEEEEEEE-EeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecCC
Confidence 888999999999999999999652 111111111 1112222224333 9999999999997754
No 40
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=57.27 E-value=63 Score=27.18 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=31.9
Q ss_pred EEEEEEEEEeCCCCcccceEEEEecCCCCeeeeeecccEEeCCCccccCCCCCeEEEEEEecCC
Q 006835 554 YYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLEFVYIHTAN 617 (629)
Q Consensus 554 ~~q~~vtV~N~g~~~i~~w~i~~~~~~~~~W~~~~~~~~~t~pswn~~i~~G~s~~FGfi~~~~ 617 (629)
-.+..|+|+|.|.....++.+.+-..-..+ ....+ ..|+||++.++-|.....
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~-----~~~~i------~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLDGNSV-----STVTI------PSLAPGESETVTFTWTPP 72 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEETTEEE-----EEEEE------SEB-TTEEEEEEEEEE-S
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEECCcee-----ccEEE------CCcCCCcEEEEEEEEEeC
Confidence 378889999999988888888864311111 01111 567888877777776654
No 41
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=57.20 E-value=12 Score=43.93 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=10.4
Q ss_pred CcchHHHHHHHHHHHHHhhhccc
Q 006835 164 NPGSDLAGETAAAMAAASIVFRH 186 (629)
Q Consensus 164 ~pgs~~~~~~AAalA~As~v~k~ 186 (629)
||-|=+.-=.++.++.-..+++.
T Consensus 172 npVSwvn~Fgvegl~ll~~~Lkr 194 (1102)
T KOG1924|consen 172 NPVSWVNKFGVEGLGLLLDVLKR 194 (1102)
T ss_pred CccHHHHHhhhhhHHHHHHHHHH
Confidence 45543322223345555556554
No 42
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=55.08 E-value=40 Score=32.50 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=38.5
Q ss_pred cccCCCCeeEEEEEEEEEeCCCCccc--ceEEEEecCCCCeee-------eee-ccc--EEeCCCccccCCCCCeEEEEE
Q 006835 545 TSWISNGKRYYRYSTIVTNKSAKTLK--NLKLSISKLYGPLWG-------LTN-LGN--AYGFPSWLNNLAAGKSLEFVY 612 (629)
Q Consensus 545 ~sW~~g~~~~~q~~vtV~N~g~~~i~--~w~i~~~~~~~~~W~-------~~~-~~~--~~t~pswn~~i~~G~s~~FGf 612 (629)
..|... +..+++++|++..++. +|.|-+.+ ...|=. ++. .+. ++++-.=-..|+||+|.++=|
T Consensus 26 ~~~~~c----~~~~ltl~n~~~~~~~~~dW~IYf~~-ir~i~~~~s~~f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~ 100 (164)
T PF03173_consen 26 ADWASC----FRAELTLTNPGDAPLPKSDWAIYFSS-IRPILQVDSDQFKITHINGDLHKLTPTAGFKGLAPGESLEIPF 100 (164)
T ss_dssp -GGG-E----EEEEEEEEE-SS-B------EEEEE--SS-EEEESSTTEEEEE-STTEEEEEE-TT---B-TTEEEEEEE
T ss_pred CCcccc----eEEEEEEEcCCCccCCCCCeEEEEec-ceeeeccCCCCeEEEEEcCeEEEEeECCCCCccCCCCEEEEEE
Confidence 456566 9999999999987755 59999775 223322 222 222 555544445799999999999
Q ss_pred EecC------C-CCceeEE
Q 006835 613 IHTA------N-AADVSVS 624 (629)
Q Consensus 613 i~~~------~-~a~~~v~ 624 (629)
++.. . +++++|.
T Consensus 101 ~~~~w~~~~tD~mp~~Yv~ 119 (164)
T PF03173_consen 101 VGEYWQVSETDAMPGWYVV 119 (164)
T ss_dssp EEES---SGGGS----EEE
T ss_pred EccccEEEEccCCCceEEE
Confidence 9765 2 6666664
No 43
>PLN03012 Camelliol C synthase
Probab=53.38 E-value=4.8e+02 Score=31.47 Aligned_cols=88 Identities=9% Similarity=0.204 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCCCeE--EEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHhhhcccCCH
Q 006835 112 NAIKWGTDYFIKAHPQPNVL--YGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFRHSDP 189 (629)
Q Consensus 112 de~kwgld~llk~~~~~g~~--y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k~~d~ 189 (629)
+-++=++||||.||..+|++ |-+-.+ .....+..|-+.-.+ ..|+ .+.+|.|+.+.-||++-...+ |
T Consensus 513 ~~l~~av~wlL~mQn~dGGwaafe~~~~--~~~le~lnp~E~F~d---~mid--~~y~dcTa~~l~aL~~f~~~~----~ 581 (759)
T PLN03012 513 EQLHDAVNILLSLQSKNGGMTAWEPAGA--PEWLELLNPTEMFAD---IVIE--HEYNECTSSAIQALILFKQLY----P 581 (759)
T ss_pred HHHHHHHHHHHhccCCCCCEeeecCCcc--hHHHHhcChhhhhcC---eecC--CCcccHHHHHHHHHHHHhhhC----c
Confidence 56888999999999999877 333211 111112334222111 1333 456677777667776544433 3
Q ss_pred HH-HHHHHHHHHHHHHHHHhcC
Q 006835 190 AY-SSELLRHAYQLFDFADKYR 210 (629)
Q Consensus 190 ~~-A~~~L~~A~~~~~~a~~~~ 210 (629)
.+ .++.-..-+++-+|..+.+
T Consensus 582 ~~r~~~i~~~i~rAv~~L~~~Q 603 (759)
T PLN03012 582 DHRTEEINAFIKKAAEYIENIQ 603 (759)
T ss_pred ccchhhhHHHHHHHHHHHHHhc
Confidence 33 2222333445556666654
No 44
>PRK09752 adhesin; Provisional
Probab=52.61 E-value=12 Score=46.17 Aligned_cols=8 Identities=13% Similarity=0.239 Sum_probs=3.3
Q ss_pred HHhcCCCC
Q 006835 122 IKAHPQPN 129 (629)
Q Consensus 122 lk~~~~~g 129 (629)
+.||.+++
T Consensus 482 ~~~~~~~~ 489 (1250)
T PRK09752 482 RALQDDPQ 489 (1250)
T ss_pred hhhhcCCc
Confidence 34444433
No 45
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=51.69 E-value=21 Score=41.99 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=2.9
Q ss_pred CCeeee
Q 006835 581 GPLWGL 586 (629)
Q Consensus 581 ~~~W~~ 586 (629)
++.|--
T Consensus 642 ~cFWvk 647 (1102)
T KOG1924|consen 642 NCFWVK 647 (1102)
T ss_pred cceeee
Confidence 345643
No 46
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=47.33 E-value=11 Score=44.13 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhc
Q 006835 114 IKWGTDYFIKAH 125 (629)
Q Consensus 114 ~kwgld~llk~~ 125 (629)
.+|+.+++-+-|
T Consensus 180 ~e~~a~~~~~G~ 191 (872)
T COG3889 180 AELNAEYMAKGL 191 (872)
T ss_pred HHHHHHHhhcCc
Confidence 356666655443
No 47
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=47.26 E-value=1.2e+02 Score=28.12 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=31.1
Q ss_pred CCeeEEEEEEEEEeCCCCccc----ceEEEEecCCCCeeeeeecccEEeCCCccccCCCCCeEE
Q 006835 550 NGKRYYRYSTIVTNKSAKTLK----NLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLE 609 (629)
Q Consensus 550 g~~~~~q~~vtV~N~g~~~i~----~w~i~~~~~~~~~W~~~~~~~~~t~pswn~~i~~G~s~~ 609 (629)
.+.-+|.|.|+|+|.+..+++ .|.|+-.+ +..=.+.+.++ +. =...|.||++++
T Consensus 26 ~~~y~f~Y~ItI~N~~~~~vQL~~R~W~I~d~~--g~~~~V~G~GV-VG---~qP~L~PGe~F~ 83 (127)
T PRK05461 26 EGRYVFAYTITIENLGRVPVQLLSRHWLITDAN--GRVQEVRGEGV-VG---EQPVLAPGESFE 83 (127)
T ss_pred CCEEEEEEEEEEEECCCCCEEEEeeeEEEEECC--CCEEEEECCce-ec---CCceECCCCCeE
Confidence 467889999999999876532 44444222 22222333333 21 145688888543
No 48
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=46.77 E-value=83 Score=33.48 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHhhhcc
Q 006835 106 ELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFR 185 (629)
Q Consensus 106 ~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k 185 (629)
..+.+++.++--++.|.+.|+++| +++++=+ .|+ . ..+ +-|++++.+|.+|+.+.+. .
T Consensus 209 ~~~~~~~~~~~~~~~l~~~q~~~G-~w~~~~~---------~~~-~----~~~------~etSatA~~a~~l~~gi~~-g 266 (336)
T PF07470_consen 209 ERDELLEIAKKLADALARYQDEDG-LWYQDLD---------DPD-P----GNY------RETSATAMFAYGLLRGIRL-G 266 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTTS-BEBSBTT---------TTT-T----TS-------BEHHHHHHHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCC-CcceecC---------CCC-C----CCc------ccHHHHHHHHHHHHHHHHc-C
Confidence 467889999999999999998555 4444432 122 0 011 3366777788888764321 1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhc
Q 006835 186 HSDPAYSSELLRHAYQLFDFADKY 209 (629)
Q Consensus 186 ~~d~~~A~~~L~~A~~~~~~a~~~ 209 (629)
-.| .+++++.|+++|+...++
T Consensus 267 ~~d---~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 267 LLD---PEEYRPAAEKALEALLSN 287 (336)
T ss_dssp SST---HHHHHHHHHHHHHHHHHC
T ss_pred CCc---cHHHHHHHHHHHHHHHhC
Confidence 122 568889999999999887
No 49
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=46.67 E-value=14 Score=41.09 Aligned_cols=7 Identities=14% Similarity=0.449 Sum_probs=2.9
Q ss_pred ceeEEEE
Q 006835 620 DVSVSAY 626 (629)
Q Consensus 620 ~~~v~~~ 626 (629)
+++|++|
T Consensus 163 D~e~N~c 169 (465)
T PF01690_consen 163 DLELNGC 169 (465)
T ss_pred CceecCc
Confidence 3444444
No 50
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=45.60 E-value=3.6e+02 Score=28.54 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=80.2
Q ss_pred hcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCcCcCCCCCCCCCCCcccccccceeecCCCccccccch--hHHHHHHH
Q 006835 15 PLALAGHDYGQALSKSILFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVKFGLPMA--FTVTMMSW 92 (629)
Q Consensus 15 ~~~~~~~~Y~~~l~~sl~ff~~QR~G~lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~~Ky~~~~a--~s~~~L~~ 92 (629)
.....+..|.+++.+++.|.-..+.- .+.|-.- ..+.||||+ +.+++=. .-+..||.
T Consensus 57 y~~t~d~~y~~A~~rgld~LL~aQyp------nGGWPQf----------~p~~~~Y~~-----~ITfND~am~~vl~lL~ 115 (290)
T TIGR02474 57 YQQEKNAKYRDAARKGIEYLLKAQYP------NGGWPQF----------YPLKGGYSD-----AITYNDNAMVNVLTLLD 115 (290)
T ss_pred HHhcCchhHHHHHHHHHHHHHhhhCC------CCCcCcc----------cCCcCCccc-----ccccCcHHHHHHHHHHH
Confidence 34556788999999999876443321 1234210 112335553 2333221 22233332
Q ss_pred HHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCC--Ccce--eEEcCCCCcc
Q 006835 93 SIIEYGKQMA--ASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMT--TDRR--AYKIDPSNPG 166 (629)
Q Consensus 93 a~~ef~~~~~--~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~--~~R~--~y~~~~~~pg 166 (629)
-+.++.+.|. .....+++...+.=|+|||||+|...|+.+. .|+.=.+.. .+.+ .|. |.
T Consensus 116 ~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t----------~Wg~Qyd~~tl~Pa~AR~yE-----~p 180 (290)
T TIGR02474 116 DIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLT----------VWCQQHDALTLQPKKARAYE-----LP 180 (290)
T ss_pred HHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCC----------chhhccCccccccccccccC-----Cc
Confidence 2233333221 2234578899999999999999975553222 233211110 1111 232 33
Q ss_pred hHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcC
Q 006835 167 SDLAGETAAAMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYR 210 (629)
Q Consensus 167 s~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~ 210 (629)
|-.+.|.+.++..==.+. +| +.+.+++-+.+-+|.+++.
T Consensus 181 Sls~~ES~~iv~~LM~~~---~p--s~~i~~ai~~A~~W~~~~~ 219 (290)
T TIGR02474 181 SLSSSESVGILLFLMTQP---NP--SAEIKEAIRAGVAWFDTSR 219 (290)
T ss_pred ccccccHHHHHHHHhcCC---CC--CHHHHHHHHHHHHHHHHCC
Confidence 444556666654422222 22 2488888888888988874
No 51
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=45.01 E-value=1.1e+02 Score=28.83 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=34.9
Q ss_pred CCceEEEEEEecccCCCCeeEEEEEEEEEeCCCCcccceEEEEec
Q 006835 534 SGAIAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSISK 578 (629)
Q Consensus 534 ~~~~~~~~~v~~sW~~g~~~~~q~~vtV~N~g~~~i~~w~i~~~~ 578 (629)
+.++.|.|.-..+=.-....+...+++++|++..+|+++.|.-.+
T Consensus 66 G~GL~v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~ 110 (145)
T PF14796_consen 66 GKGLSVEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKK 110 (145)
T ss_pred CCceeEEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCC
Confidence 468999998666433334457889999999999999999998554
No 52
>PRK13042 superantigen-like protein; Reviewed
Probab=43.11 E-value=20 Score=37.30 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=2.9
Q ss_pred CCCcccC
Q 006835 503 ATPVVTK 509 (629)
Q Consensus 503 ~~~~~~~ 509 (629)
|||.+|+
T Consensus 55 p~p~~tt 61 (291)
T PRK13042 55 SKPNATT 61 (291)
T ss_pred CCCCCCC
Confidence 3444443
No 53
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=42.98 E-value=33 Score=38.83 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=3.7
Q ss_pred ceEecCC
Q 006835 446 GAVVGGP 452 (629)
Q Consensus 446 GaLVGGP 452 (629)
++|.+|=
T Consensus 213 sYlSsgL 219 (574)
T PF07462_consen 213 SYLSSGL 219 (574)
T ss_pred hhhhhhH
Confidence 4555553
No 54
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=42.48 E-value=2.9e+02 Score=29.25 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=21.8
Q ss_pred CChHHHHHHHHhccccccCC--CCCCcceE
Q 006835 369 VAPAELLGFAKSQVDYILGD--NPRATSYM 396 (629)
Q Consensus 369 ~~~~~y~~~A~~qidYiLG~--Np~~~SyV 396 (629)
....+|.+.|.+.++.|+.+ +|-|..-|
T Consensus 268 ~d~~~y~~~a~~a~~~l~~~~~~~dG~~~~ 297 (336)
T PF07470_consen 268 LDPEEYRPAAEKALEALLSNAIDPDGKLGL 297 (336)
T ss_dssp STHHHHHHHHHHHHHHHHHCEB-TTSSSBB
T ss_pred CccHHHHHHHHHHHHHHHhCccCCCCCeEE
Confidence 45789999999999999998 66666433
No 55
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=42.35 E-value=1.4e+02 Score=32.19 Aligned_cols=119 Identities=20% Similarity=0.206 Sum_probs=69.0
Q ss_pred cccceeecCCCcc----cc-ccc--hhHHHHHHHHHHHHHHHHh----hcCChhHHHHHHHHHHHHHHHhcCCCCeEEEE
Q 006835 66 LVGGYYDAGDNVK----FG-LPM--AFTVTMMSWSIIEYGKQMA----ASGELGHAMNAIKWGTDYFIKAHPQPNVLYGE 134 (629)
Q Consensus 66 lsGGW~DAGD~~K----y~-~~~--a~s~~~L~~a~~ef~~~~~----~~~~~~dlLde~kwgld~llk~~~~~g~~y~~ 134 (629)
.+|=||-+=|+.| -. .+. +|=.--..|.....++.++ ..+....+++-++=-++=|+|.|+++| ++|+
T Consensus 175 ~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~G-lW~t 253 (357)
T COG4225 175 ETGLYYHGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESG-LWHT 253 (357)
T ss_pred CcCceEEeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhcccc-chhh
Confidence 3677887777777 22 112 1100111222223344432 234567777778888899999999555 5556
Q ss_pred eCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcC
Q 006835 135 VGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYR 210 (629)
Q Consensus 135 vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~ 210 (629)
+=| | ++|+ .| +-|++++.+|.+++.+-+. .-.+++++ .+|+++|+-...+-
T Consensus 254 iLD---d----~~~~-------sy------~EsSaSa~faYallkgi~~-G~l~~~~~----~~~~kA~~aLl~~i 304 (357)
T COG4225 254 ILD---D----GRPG-------SY------LESSASAGFAYALLKGINL-GILDPEYA----PVAEKALDALLGHI 304 (357)
T ss_pred hhc---c----CCCC-------Cc------hhhhHHHHHHHHHHHHHhc-CCCCchhh----HHHHHHHHHHHhhc
Confidence 533 1 1121 12 3456677888888876552 12366666 78888888887763
No 56
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=42.31 E-value=26 Score=30.40 Aligned_cols=20 Identities=0% Similarity=0.111 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhcCCCCeE
Q 006835 111 MNAIKWGTDYFIKAHPQPNVL 131 (629)
Q Consensus 111 Lde~kwgld~llk~~~~~g~~ 131 (629)
.++++ +++||+++|..+|++
T Consensus 42 ~~~~~-~~~~L~~~q~~dGg~ 61 (113)
T PF13249_consen 42 RDRAA-AVEWLLSQQNPDGGW 61 (113)
T ss_dssp HHHHH-HHHHHHHHB-TTSGB
T ss_pred HHHHH-HHHHHHHhCCCCCCc
Confidence 55555 999999999877754
No 57
>PLN02993 lupeol synthase
Probab=40.59 E-value=4.3e+02 Score=31.92 Aligned_cols=165 Identities=8% Similarity=0.032 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHhcCCC-CCCCCCcCcCCCCCCCCCCCcccccccceeecCCCccccccchhHHH-HHHHHHHHHHH
Q 006835 22 DYGQALSKSILFFEAQRSGY-LPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTVT-MMSWSIIEYGK 99 (629)
Q Consensus 22 ~Y~~~l~~sl~ff~~QR~G~-lp~~~~~~Wr~~s~l~d~~~~~~DlsGGW~DAGD~~Ky~~~~a~s~~-~L~~a~~ef~~ 99 (629)
.+...|++++.|...+..-. .|.+..+.+|+. .-|.=.=-+...||=|.=| +|.++- .|+. ...+.
T Consensus 436 ~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~---~~GgW~Fs~~~~gyp~sDd-------TAe~lka~l~l--~~~~~ 503 (763)
T PLN02993 436 ETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHI---SKGAWTLSDRDHGWQVSDC-------TAEALKCCMLL--SMMPA 503 (763)
T ss_pred ccCHHHHHHHHHHHHHhccCCCCCchHhhCCCC---CCCcCcCccCCCCCCcCCc-------hHHHHHHHHHH--hhCcc
Confidence 68899999999998777653 333322222211 1110000012344444444 233332 1221 11111
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHH
Q 006835 100 QMAASGELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAA 179 (629)
Q Consensus 100 ~~~~~~~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~ 179 (629)
.. . +-+.--+-++=++||||.||..+|++-.=--+.......+..|.+.-.+ ..| +.|..+.|+.+.-+|++
T Consensus 504 ~~--~-~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~---~mi--D~~~~dcT~~vl~aL~~ 575 (763)
T PLN02993 504 DV--V-GQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFAN---TMV--EREYVECTSAVIQALVL 575 (763)
T ss_pred cc--c-cccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcC---ccc--CCCCcCHHHHHHHHHHH
Confidence 00 0 1111225688899999999999987633322211111122344432000 112 23556777766666654
Q ss_pred HhhhcccCCHHH-HHHHHHHHHHHHHHHHhcC
Q 006835 180 ASIVFRHSDPAY-SSELLRHAYQLFDFADKYR 210 (629)
Q Consensus 180 As~v~k~~d~~~-A~~~L~~A~~~~~~a~~~~ 210 (629)
-... .|.+ .++.-+.-+++-+|..+.+
T Consensus 576 ~~~~----~p~~r~~ei~~~i~rAv~yL~~~Q 603 (763)
T PLN02993 576 FKQL----YPDHRTKEIIKSIEKAVQFIESKQ 603 (763)
T ss_pred hccc----CcchhhhhHHHHHHHHHHHHHHhc
Confidence 3332 2332 2233334445556666654
No 58
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=40.49 E-value=14 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=13.3
Q ss_pred CcchhHHHHHH--hhhhcccchhh
Q 006835 1 MEKFMTPLLLL--LCLPLALAGHD 22 (629)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~~ 22 (629)
|||+..|+|.+ +|+..++.+++
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN~i 24 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQANYI 24 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhcce
Confidence 89988444443 45666666543
No 59
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=38.69 E-value=4.5e+02 Score=27.97 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=63.8
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHhhhcc
Q 006835 106 ELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFR 185 (629)
Q Consensus 106 ~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k 185 (629)
+-++++++++=.++|+.+.+.+.|.+.... ++ ....+.+..+. ..|| .+.++..++.+++
T Consensus 182 ~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~------------~~-~~~~~~~~wCh-G~~G------i~~~l~~~~~~~~ 241 (343)
T cd04794 182 LKPSLAPLIKRSLDYLLSLQFPSGNFPSSL------------GN-RKRDRLVQWCH-GAPG------IVYLLAKAYLVFK 241 (343)
T ss_pred CCccHHHHHHHHHHHHHHhhccCCCCCCcc------------CC-CCCCccccccC-CCch------HHHHHHHHHHHhC
Confidence 447888899999999998754433211111 11 00122222221 1232 4556777788875
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHh--cCCCCCCCCccccccccCCCCcccHHHHHHHHHHHHhCChhHHHHHhh
Q 006835 186 HSDPAYSSELLRHAYQLFDFADK--YRGKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDYLGK 256 (629)
Q Consensus 186 ~~d~~~A~~~L~~A~~~~~~a~~--~~~~y~~~~~~~~~~Y~s~s~~~De~~wAAaeLy~aTG~~~Yl~~~~~ 256 (629)
|+++-+.+.+.++..|....- +++..+ |. .+ ..++=..||+.|++++|++.+..
T Consensus 242 --~~~~~~~~~~~~~~~~~~g~~~~~~~lCH-------G~----~G----~~~~lL~~~~~~~~~~~~~~a~~ 297 (343)
T cd04794 242 --EEQYLEAAIKCGELIWKRGLLKKGPGLCH-------GI----AG----NAYAFLLLYRLTGDLKYLYRACK 297 (343)
T ss_pred --CHHHHHHHHHHHHHHHHhCCccCCCcccc-------Cc----cc----hHHHHHHHHHHhCcHHHHHHHHH
Confidence 566666666666666543221 122221 11 22 26677889999999999987654
No 60
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=37.95 E-value=5.4e+02 Score=31.04 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCChhHHHHHhhc
Q 006835 234 LLWAAAWLYQASGNQHYLDYLGKN 257 (629)
Q Consensus 234 ~~wAAaeLy~aTG~~~Yl~~~~~~ 257 (629)
.+++...|++.|+++.|++.+.+.
T Consensus 546 i~~~L~~l~~~~~~~~~~~~a~~~ 569 (825)
T cd04792 546 ILYALTHLGKLLKDDRLLNLAKEI 569 (825)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 578889999999999998877653
No 61
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=37.55 E-value=81 Score=27.28 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=27.0
Q ss_pred CeeEEEEEEEEEeCCCCccc----ceEEEEecCCCCeeeeeecccEEeCCCccccCCCCCeEEE
Q 006835 551 GKRYYRYSTIVTNKSAKTLK----NLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLEF 610 (629)
Q Consensus 551 ~~~~~q~~vtV~N~g~~~i~----~w~i~~~~~~~~~W~~~~~~~~~t~pswn~~i~~G~s~~F 610 (629)
..-+|.+.|+|+|.+..+|. .|.|.-.+ +..=.+.+.++ + .=.+.|+||+++++
T Consensus 10 ~~y~f~Y~I~I~N~~~~~vqL~sR~W~I~d~~--g~~~~V~G~GV-V---G~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 10 NRYVFAYRIRIENHSDESVQLLSRHWIITDAD--GHVEEVEGEGV-V---GQQPVLAPGESFEY 67 (90)
T ss_dssp TBEEEEEEEEEEE-SSS-EEEEEEEEEEEETT--S-EEEEEEESB-T---TB--EE-TTEEEEE
T ss_pred CeEEEEEEEEEEECCCCCEEEEccEEEEEeCC--CCEEEEECCce-E---ccCceECCCCcEEE
Confidence 45679999999999876532 33333222 22223333333 1 12356899995554
No 62
>PF10789 Phage_RpbA: Phage RNA polymerase binding, RpbA; InterPro: IPR019725 Upon infection, the RpbA encoded phage protein binds to the ADP-ribosylated core RNA polymerase and modulates function to preferentially bind T4 promoters. This is a non-essential protein to the phage life cycle.
Probab=37.19 E-value=66 Score=28.81 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=45.5
Q ss_pred hhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCccccccccCCCCcccHHHHHHHHHHHH
Q 006835 182 IVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDG--SITVAQKYYRSISGYNDELLWAAAWLYQA 244 (629)
Q Consensus 182 ~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~y~~--~~~~~~~~Y~s~s~~~De~~wAAaeLy~a 244 (629)
.+|+.+|.+-.+..++-.++.++-+.+.-+.+.. +..-..+.|+. ..||++..|+++..+
T Consensus 45 ~lY~~iD~~V~~~wi~Lm~~~r~~sl~~Gak~V~~~g~~rled~yc~---d~De~li~Aa~~v~~ 106 (108)
T PF10789_consen 45 ELYKEIDEDVSDKWIELMRKHREDSLAAGAKFVRVNGKERLEDQYCY---DTDELLIQAAQIVAA 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCceeccCCceecchhhcc---ChHHHHHHHHHHHHH
Confidence 3688899999999999999999988877654432 22334567875 569999999998875
No 63
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.84 E-value=49 Score=33.96 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHH
Q 006835 173 TAAAMAAASIVFRHSDPAYSSELLRHAYQLFDFA 206 (629)
Q Consensus 173 ~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a 206 (629)
.|-..+-|+-.||..||+-|.+||++|+++|.--
T Consensus 73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~ 106 (288)
T KOG1586|consen 73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDM 106 (288)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhh
Confidence 3555677888999999999999999999999744
No 64
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=33.87 E-value=1.7e+02 Score=33.49 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCccc------cccccC--C-----CCcccHHHHHHHHHHHHhCChhHHHHHhhc
Q 006835 193 SELLRHAYQLFDFADKYRGKYDGSITVA------QKYYRS--I-----SGYNDELLWAAAWLYQASGNQHYLDYLGKN 257 (629)
Q Consensus 193 ~~~L~~A~~~~~~a~~~~~~y~~~~~~~------~~~Y~s--~-----s~~~De~~wAAaeLy~aTG~~~Yl~~~~~~ 257 (629)
++++++++++|+....+...-..++... .+.|.. . +--.=+++.=+-.|++.|||.+|.|.+++.
T Consensus 253 ~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd~~yaD~~Er~ 330 (520)
T PF07944_consen 253 EEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRLTGDARYADYYERA 330 (520)
T ss_pred HHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 5789999999999887653211111111 111111 0 111126777788899999999999999873
No 65
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=33.69 E-value=52 Score=34.86 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=5.4
Q ss_pred eeeeeecccEEeC
Q 006835 583 LWGLTNLGNAYGF 595 (629)
Q Consensus 583 ~W~~~~~~~~~t~ 595 (629)
.|-++.....+.+
T Consensus 187 ~~~L~~v~l~~~~ 199 (306)
T PF01299_consen 187 SFYLSSVSLTYNL 199 (306)
T ss_pred cEEEEEEEEEEEc
Confidence 4444443333433
No 66
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=33.45 E-value=61 Score=24.93 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.6
Q ss_pred EEEEEEEEEeCCCCcccceEEE
Q 006835 554 YYRYSTIVTNKSAKTLKNLKLS 575 (629)
Q Consensus 554 ~~q~~vtV~N~g~~~i~~w~i~ 575 (629)
..+|.++|+|+|..++++..|+
T Consensus 13 ~v~Yti~v~N~g~~~a~~v~v~ 34 (53)
T TIGR01451 13 TITYTITVTNNGNVPATNVVVT 34 (53)
T ss_pred EEEEEEEEEECCCCceEeEEEE
Confidence 3788899999999888887776
No 67
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=32.35 E-value=2e+02 Score=33.78 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEE
Q 006835 109 HAMNAIKWGTDYFIKAHPQPNVLYG 133 (629)
Q Consensus 109 dlLde~kwgld~llk~~~~~g~~y~ 133 (629)
++.+.|+=+++||+++|.++|.++.
T Consensus 457 ~~~~~i~rAl~~L~~~Q~~DGsw~g 481 (621)
T TIGR01787 457 EIRNVLERALEYLRREQRADGSWFG 481 (621)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 4557899999999999999987764
No 68
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=31.29 E-value=2.7e+02 Score=32.79 Aligned_cols=22 Identities=5% Similarity=-0.009 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCeE
Q 006835 110 AMNAIKWGTDYFIKAHPQPNVL 131 (629)
Q Consensus 110 lLde~kwgld~llk~~~~~g~~ 131 (629)
.-+.++=++|||++||..+|++
T Consensus 401 ~~~~i~ra~~wLl~~Qn~dGgw 422 (635)
T TIGR01507 401 RRDAMTKAFRWIAGMQSSNGGW 422 (635)
T ss_pred chHHHHHHHHHHHHhcCCCCCE
Confidence 4467899999999999988876
No 69
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=30.48 E-value=81 Score=27.86 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=16.0
Q ss_pred cccC--CCCeeEEEEEEEEEeCCCCcc
Q 006835 545 TSWI--SNGKRYYRYSTIVTNKSAKTL 569 (629)
Q Consensus 545 ~sW~--~g~~~~~q~~vtV~N~g~~~i 569 (629)
+.+. ..+..|...+|+|+|.+..++
T Consensus 26 ~~~~~~~~g~~fv~v~v~v~N~~~~~~ 52 (123)
T PF11611_consen 26 NEYSKPKEGNKFVVVDVTVKNNGDEPL 52 (123)
T ss_dssp S-BEES---SEEEEEEEEEEE-SSS-E
T ss_pred ccccccCCCCEEEEEEEEEEECCCCcE
Confidence 4444 236899999999999998764
No 70
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.93 E-value=1.7e+02 Score=28.73 Aligned_cols=75 Identities=12% Similarity=0.304 Sum_probs=45.2
Q ss_pred ceEEEEEEecccCCCCeeEEEEEEEEEeCCCCcccceEEEEecCCC-CeeeeeecccEEeCCCccccCCCCCeEEEEEEe
Q 006835 536 AIAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSISKLYG-PLWGLTNLGNAYGFPSWLNNLAAGKSLEFVYIH 614 (629)
Q Consensus 536 ~~~~~~~v~~sW~~g~~~~~q~~vtV~N~g~~~i~~w~i~~~~~~~-~~W~~~~~~~~~t~pswn~~i~~G~s~~FGfi~ 614 (629)
-+.++-++.+..--.|.+ ...+++|.|.|..+..+.+|.-+ .|- ..+.+......+ +| ..|+||++++.=|+.
T Consensus 22 ~llv~K~il~~~~v~g~~-v~V~~~iyN~G~~~A~dV~l~D~-~fp~~~F~lvsG~~s~---~~-~~i~pg~~vsh~~vv 95 (181)
T PF05753_consen 22 RLLVSKQILNKYLVEGED-VTVTYTIYNVGSSAAYDVKLTDD-SFPPEDFELVSGSLSA---SW-ERIPPGENVSHSYVV 95 (181)
T ss_pred EEEEEEeeccccccCCcE-EEEEEEEEECCCCeEEEEEEECC-CCCccccEeccCceEE---EE-EEECCCCeEEEEEEE
Confidence 566666666666543222 56678888888887777777542 242 455553322222 24 478888888877775
Q ss_pred cC
Q 006835 615 TA 616 (629)
Q Consensus 615 ~~ 616 (629)
..
T Consensus 96 ~p 97 (181)
T PF05753_consen 96 RP 97 (181)
T ss_pred ee
Confidence 54
No 71
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=28.78 E-value=7.1e+02 Score=26.37 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.3
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCe
Q 006835 106 ELGHAMNAIKWGTDYFIKAHPQPNV 130 (629)
Q Consensus 106 ~~~dlLde~kwgld~llk~~~~~g~ 130 (629)
+-+...+-++=|+||||+||..+|+
T Consensus 61 ~d~~y~~A~~rgld~LL~aQypnGG 85 (290)
T TIGR02474 61 KNAKYRDAARKGIEYLLKAQYPNGG 85 (290)
T ss_pred CchhHHHHHHHHHHHHHhhhCCCCC
Confidence 3477888999999999999988774
No 72
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=28.54 E-value=55 Score=42.40 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=12.1
Q ss_pred CCcccceEecCCCCCCCc
Q 006835 441 PNLLVGAVVGGPDAYDNF 458 (629)
Q Consensus 441 ~~~l~GaLVGGPn~~d~y 458 (629)
...+.|.+|.|+-...-|
T Consensus 1636 aF~L~g~VvAGAYeY~L~ 1653 (2039)
T PRK15319 1636 AFELKNEVNAGLYTYRLY 1653 (2039)
T ss_pred ceEccCceecccEEEEEE
Confidence 356778888888765444
No 73
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=28.26 E-value=2.7e+02 Score=25.46 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=33.5
Q ss_pred CCCeeEEEEEEEEEeCCCCccc----ceEEEEecCCCCeeeeeecccEEeCCCccccCCCCCeEEE
Q 006835 549 SNGKRYYRYSTIVTNKSAKTLK----NLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLEF 610 (629)
Q Consensus 549 ~g~~~~~q~~vtV~N~g~~~i~----~w~i~~~~~~~~~W~~~~~~~~~t~pswn~~i~~G~s~~F 610 (629)
+.+.-.|-+.|||.|+|..+++ -|.|+-. .+..=.+.+.++. . =+.-|+||.+++.
T Consensus 24 ~~~RyvfaYtitI~N~g~~~vqLlsR~W~ITd~--~g~v~eV~G~GVV-G---eQP~l~PG~~y~Y 83 (126)
T COG2967 24 EEERYVFAYTVTIRNLGEVPVQLLSRYWLITDG--NGRVTEVEGEGVV-G---EQPLLAPGEEYQY 83 (126)
T ss_pred ccceEEEEEEEEEecCCCccceeeeeEEEEecC--CCcEEEEEcCcee-c---cccccCCCCceEE
Confidence 3456778899999999987643 4444432 2333344444431 1 2556888886653
No 74
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=27.86 E-value=2.1e+02 Score=23.20 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=25.0
Q ss_pred ceEEEEEEecccCCCCeeEEEEEEEEEeCCCCcccceEEE
Q 006835 536 AIAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLS 575 (629)
Q Consensus 536 ~~~~~~~v~~sW~~g~~~~~q~~vtV~N~g~~~i~~w~i~ 575 (629)
.+.++-+...+...= .+-..|.++|+|.|+.++.+..|.
T Consensus 25 ~~~~~k~~~~~~~~~-Gd~v~ytitvtN~G~~~a~nv~v~ 63 (76)
T PF01345_consen 25 DLSITKTVNPSTANP-GDTVTYTITVTNTGPAPATNVVVT 63 (76)
T ss_pred CEEEEEecCCCcccC-CCEEEEEEEEEECCCCeeEeEEEE
Confidence 444444433333321 234788899999999888887776
No 75
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.67 E-value=99 Score=28.96 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHhhhccc----CCHHHHHHHHHHHHHHH
Q 006835 167 SDLAGETAAAMAAASIVFRH----SDPAYSSELLRHAYQLF 203 (629)
Q Consensus 167 s~~~~~~AAalA~As~v~k~----~d~~~A~~~L~~A~~~~ 203 (629)
+-+++-.|+++++++-+|-+ .||.|.+++.++.++-=
T Consensus 11 ~vI~agiag~af~gYciYFd~KRrsdP~fk~~lr~rrk~q~ 51 (143)
T KOG4056|consen 11 SVIAAGIAGLAFIGYCIYFDKKRRSDPDFKKKLRERRKKQA 51 (143)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccChhHHHHHHHHHHHHh
Confidence 45677788888888888844 59999999999998854
No 76
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=27.47 E-value=5.5e+02 Score=26.63 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCChhHHHHHhhcCcCCCCCCCCccccCCCcchHHHHHHH
Q 006835 234 LLWAAAWLYQASGNQHYLDYLGKNGDSMGGTGWGMTEFGWDVKYPGVQTLV 284 (629)
Q Consensus 234 ~~wAAaeLy~aTG~~~Yl~~~~~~~~~~~~~~~~~~~~~Wd~~~~g~~~ll 284 (629)
.+++-..|++.|+++.|++.+++..+......+ ...+|-....|...++
T Consensus 202 i~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~--~~~~lchG~~G~~~~l 250 (321)
T cd04791 202 LGLLMLRLEAITGDKRWRDEADGIAHAALSSCY--ANPGLFSGTAGLGAHL 250 (321)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc--cCccccCCcHhHHHHH
Confidence 567778999999999999988764332211112 2345555556654443
No 77
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=27.07 E-value=52 Score=37.07 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCChhHHHHHhh
Q 006835 234 LLWAAAWLYQASGNQHYLDYLGK 256 (629)
Q Consensus 234 ~~wAAaeLy~aTG~~~Yl~~~~~ 256 (629)
++.|++|||++|++..|++.+.+
T Consensus 442 ~L~allEL~~atq~~~~l~lA~~ 464 (557)
T PF06917_consen 442 LLFALLELYQATQDARYLELADQ 464 (557)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Confidence 67899999999999999998765
No 78
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=26.11 E-value=47 Score=20.05 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=10.6
Q ss_pred CcchhHHHHHHhhhh
Q 006835 1 MEKFMTPLLLLLCLP 15 (629)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (629)
|-|++.+|+.+|.++
T Consensus 1 MMk~vIIlvvLLliS 15 (19)
T PF13956_consen 1 MMKLVIILVVLLLIS 15 (19)
T ss_pred CceehHHHHHHHhcc
Confidence 678888877776553
No 79
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=25.35 E-value=1.2e+02 Score=32.22 Aligned_cols=82 Identities=22% Similarity=0.173 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhcC-----CCCCCCCccccccccCCCCcccH-HHHHHHH
Q 006835 167 SDLAGETAAAMAAASIVFRHSDPAYSSELLRHAYQLFDFADKYR-----GKYDGSITVAQKYYRSISGYNDE-LLWAAAW 240 (629)
Q Consensus 167 s~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~-----~~y~~~~~~~~~~Y~s~s~~~De-~~wAAae 240 (629)
.-+.+...=++|.|++ +. +|+ +|+.|++.++|..++= |.+.-.....+..=.....|.+- .+.|.++
T Consensus 20 ~~~q~R~~~~fa~a~~-~g--~~~----~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~ 92 (346)
T PF07221_consen 20 LWVQARQLYTFARAYR-LG--RPE----YLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAE 92 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TT--SHH----HHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHh-cC--chh----HHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHH
Confidence 4567889999999999 54 544 7888999999999862 21211110000000000112222 3457688
Q ss_pred HHHHhCChhHHHHHhh
Q 006835 241 LYQASGNQHYLDYLGK 256 (629)
Q Consensus 241 Ly~aTG~~~Yl~~~~~ 256 (629)
+++||++.|++.+++
T Consensus 93 -~~~tg~~~~~~~A~~ 107 (346)
T PF07221_consen 93 -ARATGDPEALELAEQ 107 (346)
T ss_dssp -HHCTT-TTHHHHHHH
T ss_pred -HHHhCChhHHHHHHH
Confidence 999999999998765
No 80
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=24.22 E-value=18 Score=31.44 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCe
Q 006835 109 HAMNAIKWGTDYFIKAHPQPNV 130 (629)
Q Consensus 109 dlLde~kwgld~llk~~~~~g~ 130 (629)
...+-|+=+++||+++|.++|+
T Consensus 43 ~~~~ai~ka~~~l~~~Q~~dG~ 64 (109)
T PF13243_consen 43 AVDEAIKKAIDWLLSHQNPDGG 64 (109)
T ss_dssp -SSBSSHHHHHHHHH---TTS-
T ss_pred CcHHHHHHHHHHHHHhcCCCCC
Confidence 5555677899999999877763
No 81
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=24.11 E-value=7.1e+02 Score=26.35 Aligned_cols=87 Identities=13% Similarity=-0.057 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCCCCCCcceeEEcCCCCcchHHHHHHHHHHHHHhhhcc
Q 006835 106 ELGHAMNAIKWGTDYFIKAHPQPNVLYGEVGDGNTDHNCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFR 185 (629)
Q Consensus 106 ~~~dlLde~kwgld~llk~~~~~g~~y~~vgd~~~dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~~~~~AAalA~As~v~k 185 (629)
+-+..++-+.=|+||||++|..+|+.=.. -|..-...+.+-. + =++..++.-.|=.++.-..
T Consensus 56 ~d~~y~~A~~kgl~ylL~aQypnGGWPQ~------------yP~~~~Y~~~ITf---N---Ddam~~vl~lL~~v~~~~~ 117 (289)
T PF09492_consen 56 KDPRYREAFLKGLDYLLKAQYPNGGWPQF------------YPLRGGYHDHITF---N---DDAMVNVLELLRDVAEGKG 117 (289)
T ss_dssp G-HHHHHHHHHHHHHHHHHS-TTS--BSE------------CS--SGGGGSEE----G---GGHHHHHHHHHHHHHCT-T
T ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCcc------------CCCCCCCCCceEE---c---cHHHHHHHHHHHHHHhhcC
Confidence 45688999999999999999877643111 1222111222211 1 1445555555555555444
Q ss_pred cC---CHHHHHHHHHHHHHHHHHHHhcC
Q 006835 186 HS---DPAYSSELLRHAYQLFDFADKYR 210 (629)
Q Consensus 186 ~~---d~~~A~~~L~~A~~~~~~a~~~~ 210 (629)
++ |+++.+++.++..+.-++..+.+
T Consensus 118 ~~~~v~~~~~~r~~~A~~kgi~ciL~tQ 145 (289)
T PF09492_consen 118 DFAFVDESLRARARAAVDKGIDCILKTQ 145 (289)
T ss_dssp TSTTS-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 67788888888888888777654
No 82
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=23.12 E-value=2e+02 Score=36.53 Aligned_cols=71 Identities=10% Similarity=0.014 Sum_probs=46.2
Q ss_pred eEEEEEEEEEeCCCCcccceEEEEecCC----CC--eeee-------------ee-cccEEeCCCccccCCCCCeEEEEE
Q 006835 553 RYYRYSTIVTNKSAKTLKNLKLSISKLY----GP--LWGL-------------TN-LGNAYGFPSWLNNLAAGKSLEFVY 612 (629)
Q Consensus 553 ~~~q~~vtV~N~g~~~i~~w~i~~~~~~----~~--~W~~-------------~~-~~~~~t~pswn~~i~~G~s~~FGf 612 (629)
+-.+..|+++|.|+.+|+-..|++.+.. .. .|.- .. ...++.... .|+||++.+|-+
T Consensus 799 E~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~---~I~Pg~~~~~~~ 875 (1185)
T PF08626_consen 799 EKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKP---PIPPGESATFTV 875 (1185)
T ss_pred cEEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccC---ccCCCCEEEEEE
Confidence 5688999999999999999999966211 00 1211 11 111222222 899999999999
Q ss_pred EecCCCCceeEEEE
Q 006835 613 IHTANAADVSVSAY 626 (629)
Q Consensus 613 i~~~~~a~~~v~~~ 626 (629)
-..|.+..+.++..
T Consensus 876 ~~~~~~~~~~~~~~ 889 (1185)
T PF08626_consen 876 EVDGKPGPIQLTYA 889 (1185)
T ss_pred EecCcccccceeee
Confidence 98877654444444
No 83
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=23.04 E-value=2e+02 Score=30.01 Aligned_cols=26 Identities=8% Similarity=0.299 Sum_probs=14.3
Q ss_pred EEEEEEecccCC-CCeeEEEEEEEEEe
Q 006835 538 AIQQKLTTSWIS-NGKRYYRYSTIVTN 563 (629)
Q Consensus 538 ~~~~~v~~sW~~-g~~~~~q~~vtV~N 563 (629)
-+++.|-.-|.. ...+..-+++-+++
T Consensus 118 GFS~vvP~GW~~Sda~~L~yG~alls~ 144 (297)
T PF07174_consen 118 GFSYVVPAGWVESDASHLDYGSALLSK 144 (297)
T ss_pred ceEEeccCCccccccceeecceeeecc
Confidence 347777888883 23333335555554
No 84
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=20.96 E-value=1.1e+02 Score=28.50 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=20.9
Q ss_pred CcchhHHHHHHhhhhcccchhhHHHHHHHHHHHHHHhcCC
Q 006835 1 MEKFMTPLLLLLCLPLALAGHDYGQALSKSILFFEAQRSG 40 (629)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~sl~ff~~QR~G 40 (629)
||||++.++.+||.++...... ...+. .-|..||++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~-~~~~~---~af~~~qs~ 36 (131)
T PF11948_consen 1 MKRFLALFLSVLSAFSTALAAS-DTCLQ---QAFENQQSD 36 (131)
T ss_pred CcchHHHHHHHHHHhccccccc-hHHHH---HHHHhhccC
Confidence 9999988878887754322211 11222 346666666
No 85
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=20.73 E-value=5.9e+02 Score=23.43 Aligned_cols=67 Identities=19% Similarity=0.150 Sum_probs=42.0
Q ss_pred CCeeEEEEEEEEEeCCCCcccceEEEEe--cCCCC---eeeeeecccEEeCC--CccccCCCCCeEEEEEEecCCC
Q 006835 550 NGKRYYRYSTIVTNKSAKTLKNLKLSIS--KLYGP---LWGLTNLGNAYGFP--SWLNNLAAGKSLEFVYIHTANA 618 (629)
Q Consensus 550 g~~~~~q~~vtV~N~g~~~i~~w~i~~~--~~~~~---~W~~~~~~~~~t~p--swn~~i~~G~s~~FGfi~~~~~ 618 (629)
++...++.+.+|.|++..+..=..|.++ +.-+. .|.+... .+-.+ .=+..|+||++..|-+....++
T Consensus 65 ~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~--~yl~~~~~~~~~l~pg~~~~~~~~~~~p~ 138 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPA--DYLPPGLAAQAGLPPGESVPFRLRLEDPP 138 (149)
T ss_pred CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChH--HhcccccccccccCCCCeEEEEEEeeCCC
Confidence 3567799999999999988665555543 32222 3444221 11111 1145699999999999877653
No 86
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=20.13 E-value=52 Score=21.62 Aligned_cols=17 Identities=41% Similarity=0.592 Sum_probs=11.7
Q ss_pred CcchhHHHHHHhhhhcc
Q 006835 1 MEKFMTPLLLLLCLPLA 17 (629)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (629)
|||+..+|+.++.+..+
T Consensus 7 mKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 48988777777655544
No 87
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=20.04 E-value=4.5e+02 Score=27.65 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEE
Q 006835 109 HAMNAIKWGTDYFIKAHPQPNVLY 132 (629)
Q Consensus 109 dlLde~kwgld~llk~~~~~g~~y 132 (629)
++.+.++=+++||+++|..+|.++
T Consensus 188 ~~~~~i~~a~~~L~~~q~~dG~w~ 211 (348)
T cd02889 188 EIDPAIRRAVKYLEREQEPDGSWY 211 (348)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcc
Confidence 466678889999999998887654
Done!