Your job contains 1 sequence.
>006836
MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET
IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK
CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP
ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE
VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR
HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET
DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY
LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE
VIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITLE
EGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGGNMGEWGVVD
RALLGGMLVSFLIILALLIHVGFRTLSTK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006836
(629 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2030342 - symbol:AT1G72090 species:3702 "Arabi... 2047 2.9e-218 2
UNIPROTKB|Q291H5 - symbol:GA19679 "Threonylcarbamoyladeno... 1300 1.3e-132 1
UNIPROTKB|E1BRH0 - symbol:CDKAL1 "Uncharacterized protein... 1285 5.0e-131 1
UNIPROTKB|F1MAW5 - symbol:CDKAL1 "Uncharacterized protein... 1265 9.9e-131 2
FB|FBgn0034214 - symbol:CG6550 species:7227 "Drosophila m... 1281 1.3e-130 1
UNIPROTKB|Q5VV42 - symbol:CDKAL1 "Threonylcarbamoyladenos... 1273 9.3e-130 1
UNIPROTKB|E2RAI1 - symbol:CDKAL1 "CDK5 regulatory subunit... 1265 6.6e-129 1
UNIPROTKB|F1RUG0 - symbol:CDKAL1 "Uncharacterized protein... 1264 8.4e-129 1
MGI|MGI:1921765 - symbol:Cdkal1 "CDK5 regulatory subunit ... 1259 2.8e-128 1
ZFIN|ZDB-GENE-040426-1443 - symbol:cdkal1 "CDK5 regulator... 1242 1.8e-126 1
WB|WBGene00022363 - symbol:Y92H12BL.1 species:6239 "Caeno... 929 2.7e-93 1
UNIPROTKB|F1LV76 - symbol:F1LV76 "Uncharacterized protein... 594 8.4e-58 1
TIGR_CMR|CHY_0419 - symbol:CHY_0419 "MiaB-like tRNA modif... 510 6.7e-49 1
UNIPROTKB|Q81LS6 - symbol:BAS4209 "Uncharacterized protei... 505 2.3e-48 1
TIGR_CMR|BA_4535 - symbol:BA_4535 "conserved hypothetical... 505 2.3e-48 1
UNIPROTKB|O31778 - symbol:miaB "(Dimethylallyl)adenosine ... 500 7.7e-48 1
UNIPROTKB|P54462 - symbol:mtaB "Threonylcarbamoyladenosin... 499 9.8e-48 1
UNIPROTKB|Q81WR0 - symbol:miaB "(Dimethylallyl)adenosine ... 496 2.0e-47 1
TIGR_CMR|BA_3908 - symbol:BA_3908 "conserved hypothetical... 496 2.0e-47 1
TIGR_CMR|CHY_1398 - symbol:CHY_1398 "tRNA-i(6)A37 thiotra... 496 2.0e-47 1
UNIPROTKB|P0AEI1 - symbol:miaB "isopentenyl-adenosine A37... 483 4.8e-46 1
UNIPROTKB|Q74A23 - symbol:mtaB "tRNA (2-methylthio-N6-thr... 479 1.3e-45 1
TIGR_CMR|GSU_2568 - symbol:GSU_2568 "MiaB-like tRNA modif... 479 1.3e-45 1
UNIPROTKB|Q9KTE0 - symbol:miaB "(Dimethylallyl)adenosine ... 473 5.6e-45 1
TIGR_CMR|VC_0962 - symbol:VC_0962 "conserved hypothetical... 473 5.6e-45 1
UNIPROTKB|Q83DX3 - symbol:miaB "(Dimethylallyl)adenosine ... 461 1.0e-43 1
TIGR_CMR|CBU_0569 - symbol:CBU_0569 "conserved hypothetic... 461 1.0e-43 1
UNIPROTKB|Q74B44 - symbol:miaB "(Dimethylallyl)adenosine ... 458 2.2e-43 1
TIGR_CMR|GSU_2198 - symbol:GSU_2198 "tRNA-i(6)A37 modific... 458 2.2e-43 1
TIGR_CMR|SO_1181 - symbol:SO_1181 "tRNA-i(6)A37 modificat... 458 2.2e-43 1
UNIPROTKB|Q747R0 - symbol:rimO "Ribosomal protein S12 met... 452 9.3e-43 1
TIGR_CMR|GSU_3205 - symbol:GSU_3205 "MiaB-like tRNA modif... 452 9.3e-43 1
TIGR_CMR|SPO_A0002 - symbol:SPO_A0002 "tRNA-i(6)A37 thiot... 432 1.2e-40 1
UNIPROTKB|Q608N1 - symbol:miaB "(Dimethylallyl)adenosine ... 429 2.6e-40 1
TIGR_CMR|CJE_0508 - symbol:CJE_0508 "tRNA-i(6)A37 thiotra... 419 3.0e-39 1
TIGR_CMR|NSE_0832 - symbol:NSE_0832 "tRNA-i(6)A37 modific... 414 1.2e-38 1
UNIPROTKB|Q607P8 - symbol:MCA1711 "Putative uncharacteriz... 412 2.1e-38 1
TIGR_CMR|CPS_3572 - symbol:CPS_3572 "tRNA-i(6)A37 thiotra... 411 2.7e-38 1
TIGR_CMR|ECH_0837 - symbol:ECH_0837 "tRNA-i(6)A37 modific... 408 6.2e-38 1
TIGR_CMR|APH_0880 - symbol:APH_0880 "tRNA-i(6)A37 thiotra... 401 4.1e-37 1
TIGR_CMR|CHY_1164 - symbol:CHY_1164 "MiaB-like tRNA modif... 401 4.1e-37 1
TIGR_CMR|DET_1385 - symbol:DET_1385 "tRNA-i(6)A37 thiotra... 369 1.8e-33 1
TIGR_CMR|DET_0962 - symbol:DET_0962 "tRNA modification en... 367 3.0e-33 1
FB|FBgn0037816 - symbol:CG6345 species:7227 "Drosophila m... 240 2.4e-28 2
UNIPROTKB|Q60CM4 - symbol:rimO "Ribosomal protein S12 met... 320 1.4e-27 1
TIGR_CMR|CJE_1086 - symbol:CJE_1086 "MiaB-like tRNA modif... 310 5.7e-27 1
UNIPROTKB|F1NZV3 - symbol:CDK5RAP1 "Uncharacterized prote... 217 6.8e-27 2
UNIPROTKB|Q2GHP3 - symbol:ECH_0217 "tRNA modification enz... 307 1.2e-26 1
TIGR_CMR|ECH_0217 - symbol:ECH_0217 "tRNA modification en... 307 1.2e-26 1
TIGR_CMR|CJE_1627 - symbol:CJE_1627 "MiaB-like tRNA modif... 315 1.9e-26 1
TIGR_CMR|NSE_0785 - symbol:NSE_0785 "tRNA modification en... 311 3.1e-26 1
DICTYBASE|DDB_G0287079 - symbol:DDB_G0287079 "CDK5 regula... 207 3.1e-26 2
ZFIN|ZDB-GENE-070424-90 - symbol:zgc:162738 "zgc:162738" ... 217 4.9e-25 2
UNIPROTKB|F1S500 - symbol:CDK5RAP1 "Uncharacterized prote... 196 9.8e-25 2
UNIPROTKB|E2QYD7 - symbol:CDK5RAP1 "Uncharacterized prote... 198 1.5e-24 2
MGI|MGI:1914221 - symbol:Cdk5rap1 "CDK5 regulatory subuni... 195 1.6e-24 2
RGD|708387 - symbol:Cdk5rap1 "CDK5 regulatory subunit ass... 191 1.7e-24 2
UNIPROTKB|Q9KNW0 - symbol:rimO "Ribosomal protein S12 met... 302 2.5e-24 1
TIGR_CMR|VC_2620 - symbol:VC_2620 "conserved hypothetical... 302 2.5e-24 1
WB|WBGene00017776 - symbol:F25B5.5 species:6239 "Caenorha... 186 4.7e-24 2
UNIPROTKB|Q09316 - symbol:F25B5.5 "CDK5RAP1-like protein"... 186 4.7e-24 2
UNIPROTKB|P0AEI4 - symbol:rimO "ribosomal protein S12 D88... 293 1.7e-23 1
UNIPROTKB|Q08DN3 - symbol:CDK5RAP1 "CDK5 regulatory subun... 188 2.6e-23 3
UNIPROTKB|Q8EA37 - symbol:rimO "Ribosomal protein S12 met... 293 3.3e-23 1
TIGR_CMR|SO_4072 - symbol:SO_4072 "MiaB-like putative RNA... 293 3.3e-23 1
UNIPROTKB|Q48FA7 - symbol:rimO "Ribosomal protein S12 met... 290 4.5e-23 1
UNIPROTKB|Q87Y01 - symbol:rimO "Ribosomal protein S12 met... 285 1.7e-22 1
UNIPROTKB|Q96SZ6 - symbol:CDK5RAP1 "CDK5 regulatory subun... 192 6.4e-21 2
TAIR|locus:2115410 - symbol:AT4G36390 species:3702 "Arabi... 177 1.2e-18 2
TIGR_CMR|SPO_0944 - symbol:SPO_0944 "RNA modification enz... 247 5.2e-18 1
TIGR_CMR|SPO_0277 - symbol:SPO_0277 "MiaB-like tRNA modif... 244 7.3e-18 1
UNIPROTKB|E2RIW1 - symbol:CDK5RAP1 "Uncharacterized prote... 160 2.4e-15 2
UNIPROTKB|Q675N4 - symbol:CDK5RAP1 "CDK5 regulatory subun... 163 5.3e-12 2
RGD|1310246 - symbol:Cdkal1 "CDK5 regulatory subunit asso... 148 1.8e-09 1
UNIPROTKB|H0Y721 - symbol:CDK5RAP1 "CDK5 regulatory subun... 143 3.9e-07 1
UNIPROTKB|Q74FM0 - symbol:yhcC-2 "Radical SAM domain iron... 130 2.2e-05 1
TIGR_CMR|GSU_0586 - symbol:GSU_0586 "radical SAM protein,... 130 2.2e-05 1
>TAIR|locus:2030342 [details] [associations]
symbol:AT1G72090 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0043412 "macromolecule modification" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
InterPro:IPR005839 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005783
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0016020 GO:GO:0016740
GO:GO:0051539 eggNOG:COG0621 HOGENOM:HOG000224768 Gene3D:3.80.30.20
InterPro:IPR006466 InterPro:IPR023404 InterPro:IPR002792
TIGRFAMs:TIGR01578 PROSITE:PS50926 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:DVPAFTD EMBL:AC069273 EMBL:AF367274
EMBL:BT002712 IPI:IPI00526826 PIR:B96744 RefSeq:NP_565035.1
UniGene:At.17477 ProteinModelPortal:Q9C7H2 SMR:Q9C7H2 PaxDb:Q9C7H2
PRIDE:Q9C7H2 ProMEX:Q9C7H2 EnsemblPlants:AT1G72090.1 GeneID:843540
KEGG:ath:AT1G72090 TAIR:At1g72090 InParanoid:Q9C7H2
PhylomeDB:Q9C7H2 ProtClustDB:CLSN2689155 Genevestigator:Q9C7H2
Uniprot:Q9C7H2
Length = 601
Score = 2047 (725.6 bits), Expect = 2.9e-218, Sum P(2) = 2.9e-218
Identities = 401/501 (80%), Positives = 437/501 (87%)
Query: 1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPRLHDNH----LSKTGSLSP--- 53
MEDIEDLL FRLP+NAVG+NPK NK+K R+ S SL+P
Sbjct: 1 MEDIEDLLAGGVGGAPPG-FRLPLNAVGINPKTNKSK-RISSKPDQITASNRDSLAPPSM 58
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
KIPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGYALT+ EEAD+WLINTCTVKSPSQSA
Sbjct: 59 KIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSA 118
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETDEDF+QTV LIK+YKFPQVHISQFYPRPGTPAA+MKKV S +VK+RSRELTSV
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRELTSV 418
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 473
FEAF PY GME R ERIWITE+A DGIHLVGHTKGYVQVLV +MLGTSA+ +ITSVG
Sbjct: 419 FEAFAPYTGMECREERIWITEVATDGIHLVGHTKGYVQVLVTGPESMLGTSAMARITSVG 478
Query: 474 RWSVFGEVIKILNQVDDKIAS 494
RWSVFGEVI+ + + + S
Sbjct: 479 RWSVFGEVIETFSSANRETKS 499
Score = 84 (34.6 bits), Expect = 2.9e-218, Sum P(2) = 2.9e-218
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 583 KKKQEWM--GGNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 626
K+ QE + G ++ WG +D+AL+ G+ VS + IL LLI + R L
Sbjct: 554 KEVQEVVVPGSSVANWGFIDKALVCGVFVSSVTILVLLISIACRVL 599
>UNIPROTKB|Q291H5 [details] [associations]
symbol:GA19679 "Threonylcarbamoyladenosine tRNA
methylthiotransferase" species:46245 "Drosophila pseudoobscura
pseudoobscura" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016021 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0008033 EMBL:CM000071
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 KO:K15865 GO:GO:0009451 TIGRFAMs:TIGR00089
OMA:TLKGHSV OrthoDB:EOG4W3R39 Pfam:PF01938 RefSeq:XP_001360562.1
ProteinModelPortal:Q291H5 GeneID:4803921 KEGG:dpo:Dpse_GA19679
FlyBase:FBgn0079675 InParanoid:Q291H5 Uniprot:Q291H5
Length = 553
Score = 1300 (462.7 bits), Expect = 1.3e-132, P = 1.3e-132
Identities = 249/435 (57%), Positives = 320/435 (73%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+CTVK+PS+
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHIVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPEH--CMLRVGMTNPPY 304
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVT 364
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET+EDF +T+ L Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 365 IATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 424
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 467
+ LT +F ++ PY G + + +TEI+ D +H VGH K Y QVL+P N+LGT V
Sbjct: 425 KRLTDLFYSYEPYAQRVGEMYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHV 484
Query: 468 KITSVGRWSVFGEVI 482
+ITSV ++S+ GE++
Sbjct: 485 RITSVSKFSMVGEIL 499
>UNIPROTKB|E1BRH0 [details] [associations]
symbol:CDKAL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:TLKGHSV
Pfam:PF01938 EMBL:AADN02027453 EMBL:AADN02027454 EMBL:AADN02027455
EMBL:AADN02027456 EMBL:AADN02027457 EMBL:AADN02027458
EMBL:AADN02027459 EMBL:AADN02027460 EMBL:AADN02027461
EMBL:AADN02027462 EMBL:AADN02027463 EMBL:AADN02027464
EMBL:AADN02027465 EMBL:AADN02027466 EMBL:AADN02027467
EMBL:AADN02027468 EMBL:AADN02027469 EMBL:AADN02027470
EMBL:AADN02027471 IPI:IPI00574581 ProteinModelPortal:E1BRH0
Ensembl:ENSGALT00000020688 ArrayExpress:E1BRH0 Uniprot:E1BRH0
Length = 568
Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
Identities = 246/435 (56%), Positives = 322/435 (74%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++
Sbjct: 58 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHF 117
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 118 RNSIKKAQEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 177
Query: 175 HRKK-----LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 178 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 237
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+
Sbjct: 238 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPY 295
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DFR VVD L E VPG+
Sbjct: 296 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGIT 355
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETDEDF +T+ L+++YKFP + I+QFYPRPGTPAA+M +VP+AV K+R+
Sbjct: 356 IATDIICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRT 415
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 467
++L+ +F ++ PY G +R+ +TE + D + V H Y QVLVP ++G V
Sbjct: 416 KDLSQLFHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPALMGKMVEV 475
Query: 468 KITSVGRWSVFGEVI 482
I G+ + G+ +
Sbjct: 476 NIYEAGKHFMKGQPV 490
>UNIPROTKB|F1MAW5 [details] [associations]
symbol:CDKAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938 EMBL:DAAA02055585
EMBL:DAAA02055586 EMBL:DAAA02055587 EMBL:DAAA02055588
IPI:IPI00826239 RefSeq:NP_001179620.1 UniGene:Bt.68904
ProteinModelPortal:F1MAW5 Ensembl:ENSBTAT00000017811 GeneID:530159
KEGG:bta:530159 NextBio:20875192 Uniprot:F1MAW5
Length = 578
Score = 1265 (450.4 bits), Expect = 9.9e-131, Sum P(2) = 9.9e-131
Identities = 249/489 (50%), Positives = 340/489 (69%)
Query: 1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+ DIED++ F + V PK + + + + S S IPG +
Sbjct: 10 LNDIEDIVSQEDSKPQDRHF----SRKHVVPKVRRRNTQKYLQEENSPPSDST-IPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK-- 178
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 179 ---LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IATDII
Sbjct: 303 EMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGITIATDII 362
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+ +
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKELSRI 422
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 473
F ++ PY G+ +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 423 FHSYNPYDHKIGQRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIYESG 482
Query: 474 RWSVFGEVI 482
+ + G+ +
Sbjct: 483 KHFMKGQPV 491
Score = 38 (18.4 bits), Expect = 9.9e-131, Sum P(2) = 9.9e-131
Identities = 19/71 (26%), Positives = 27/71 (38%)
Query: 434 EIAADGIHLV-GHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKI 492
+I G H + G +V PS L + +T R + LN V
Sbjct: 477 DIYESGKHFMKGQPVSDAKVYTPSISKPLARGEVSGLTEEFR----NRLGNHLNSVPHTS 532
Query: 493 ASNRRISSQVR 503
A+NRR S+ R
Sbjct: 533 AANRRESASSR 543
>FB|FBgn0034214 [details] [associations]
symbol:CG6550 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0016740
"transferase activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE013599 GO:GO:0016021 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0008033 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 KO:K15865 GO:GO:0009451 TIGRFAMs:TIGR00089
EMBL:AY051634 RefSeq:NP_611207.1 UniGene:Dm.4535
ProteinModelPortal:Q7K4W1 SMR:Q7K4W1 STRING:Q7K4W1 PaxDb:Q7K4W1
PRIDE:Q7K4W1 EnsemblMetazoa:FBtr0086961 GeneID:36954
KEGG:dme:Dmel_CG6550 UCSC:CG6550-RA FlyBase:FBgn0034214
InParanoid:Q7K4W1 OMA:TLKGHSV OrthoDB:EOG4W3R39 PhylomeDB:Q7K4W1
GenomeRNAi:36954 NextBio:801207 Bgee:Q7K4W1 Pfam:PF01938
Uniprot:Q7K4W1
Length = 552
Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
Identities = 246/436 (56%), Positives = 316/436 (72%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ EEAD+WL+N+CTVK+PS+
Sbjct: 67 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKEEADLWLLNSCTVKNPSEDTF 125
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH V+LL
Sbjct: 126 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLL 185
Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
KK L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +
Sbjct: 186 QNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 245
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 246 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPEH--CMLRVGMTNPP 303
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ILEHL+E+A VL+HP VYSFLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 304 YILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGV 363
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+PRPGTPAA+M ++P+ +VKKR
Sbjct: 364 TIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMDRIPANLVKKR 423
Query: 407 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 466
++ LT +F ++ PY G + + +TE++ D +H VGH K Y QVL+P N+LGT
Sbjct: 424 TKRLTDLFYSYEPYADRVGEIYTVLVTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVH 483
Query: 467 VKITSVGRWSVFGEVI 482
V+ITS ++S+ GE++
Sbjct: 484 VRITSASKFSMVGEIL 499
>UNIPROTKB|Q5VV42 [details] [associations]
symbol:CDKAL1 "Threonylcarbamoyladenosine tRNA
methylthiotransferase" species:9606 "Homo sapiens" [GO:0009451 "RNA
modification" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016021 GO:GO:0005789
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0008033 MIM:125853
EMBL:CH471087 eggNOG:COG0621 HOGENOM:HOG000224768 Gene3D:3.80.30.20
InterPro:IPR006466 InterPro:IPR023404 InterPro:IPR002792
TIGRFAMs:TIGR01578 PROSITE:PS50926 CTD:54901 HOVERGEN:HBG097712
KO:K15865 GO:GO:0009451 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:AK000349 EMBL:AK128546 EMBL:AK291735 EMBL:AL513188
EMBL:AL022717 EMBL:AL033521 EMBL:AL035090 EMBL:AL451080
EMBL:AL512405 EMBL:AL513015 EMBL:AL513549 EMBL:BC064145
EMBL:BC121020 EMBL:BC121021 IPI:IPI00015713 IPI:IPI00443485
IPI:IPI00855838 RefSeq:NP_060244.2 UniGene:Hs.657604
ProteinModelPortal:Q5VV42 SMR:Q5VV42 STRING:Q5VV42
PhosphoSite:Q5VV42 DMDM:74747199 PaxDb:Q5VV42 PeptideAtlas:Q5VV42
PRIDE:Q5VV42 Ensembl:ENST00000274695 Ensembl:ENST00000378610
Ensembl:ENST00000378624 GeneID:54901 KEGG:hsa:54901 UCSC:uc003ndb.1
UCSC:uc003ndd.2 UCSC:uc003nde.2 GeneCards:GC06P020534
HGNC:HGNC:21050 HPA:HPA014374 MIM:611259 neXtProt:NX_Q5VV42
PharmGKB:PA134871999 InParanoid:Q5VV42 OMA:CPDITLR
OrthoDB:EOG4RJG1D PhylomeDB:Q5VV42 ChiTaRS:CDKAL1 GenomeRNAi:54901
NextBio:57928 Bgee:Q5VV42 CleanEx:HS_CDKAL1 Genevestigator:Q5VV42
Uniprot:Q5VV42
Length = 579
Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
Identities = 249/489 (50%), Positives = 340/489 (69%)
Query: 1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED++ F + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQEDSKPQDRHF---VRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK-- 178
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 179 ---LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 473
F +++PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 474 RWSVFGEVI 482
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>UNIPROTKB|E2RAI1 [details] [associations]
symbol:CDKAL1 "CDK5 regulatory subunit-associated protein
1-like 1" species:9615 "Canis lupus familiaris" [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938 EMBL:AAEX03017586
EMBL:AAEX03017587 EMBL:AB720723 RefSeq:XP_849433.1
Ensembl:ENSCAFT00000016240 GeneID:488240 KEGG:cfa:488240
Uniprot:E2RAI1
Length = 578
Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
Identities = 244/461 (52%), Positives = 327/461 (70%)
Query: 29 VNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYA 88
V PK K + + + S S IPG + I+M+T+GCSHN SD EYMAGQL+A+GY
Sbjct: 34 VVPKARKRNTQKYLQEENSPPSDST-IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYE 92
Query: 89 LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVS 148
+T+N+ EAD+WL+N+CTVK+P++ I K + K +V+AGCVPQ +G+S
Sbjct: 93 ITENASEADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYFKGLS 152
Query: 149 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVG 201
I+GVQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ +N G
Sbjct: 153 IIGVQQIDRVVEVVEETIKGHSVRLLGQKKANGKRLGGARLDLPKIRKNPLIEIISVNTG 212
Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 261
CL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NLP
Sbjct: 213 CLNACTYCKTKHARGNLASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPA 272
Query: 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD VL
Sbjct: 273 LLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLM 330
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
M REY ++DF+ VVD L E VPG+ +ATDIICGFPGETD+DF +TV L+++YKFP + I
Sbjct: 331 EMKREYCVADFKRVVDFLKEKVPGITLATDIICGFPGETDQDFQETVKLVEDYKFPSLFI 390
Query: 382 SQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH 441
+QFYPRPGTPAA+M +VP+ V K+R+++L+ VF ++ PY G +++ +TE + D
Sbjct: 391 NQFYPRPGTPAAKMVQVPAQVKKQRTKDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKF 450
Query: 442 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 482
V H + Y QVLVP +G V I G+ + G+ +
Sbjct: 451 YVAHNRFYEQVLVPKNPTFMGKMIEVDIYESGKHFMKGQPV 491
>UNIPROTKB|F1RUG0 [details] [associations]
symbol:CDKAL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938 EMBL:CT841541
EMBL:CT842529 EMBL:CT954244 EMBL:CT956009 EMBL:CU326401
RefSeq:XP_003128247.3 UniGene:Ssc.32559 ProteinModelPortal:F1RUG0
Ensembl:ENSSSCT00000001175 GeneID:100512355 KEGG:ssc:100512355
Uniprot:F1RUG0
Length = 578
Score = 1264 (450.0 bits), Expect = 8.4e-129, P = 8.4e-129
Identities = 250/491 (50%), Positives = 340/491 (69%)
Query: 1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPR--LHDNHLSKTGSLSPKIPGT 58
++DIED++ F V PK + + L D + + S IPG
Sbjct: 10 LDDIEDIVSQEDSKPQDRHFARK----QVVPKVRRRNTQKYLQDENSPPSDST---IPGI 62
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I
Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSI 122
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 123 KKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 182
Query: 179 -----LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 183 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAK 242
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 243 QSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEH 300
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IATD
Sbjct: 301 LEEMAKILNHPRVYAFLHIPVQSASDTVLMDMKREYCVADFKRVVDFLKDKVPGITIATD 360
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
IICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+
Sbjct: 361 IICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLS 420
Query: 412 SVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 471
VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 RVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIYE 480
Query: 472 VGRWSVFGEVI 482
G+ + G+ +
Sbjct: 481 SGKHFMKGQPV 491
>MGI|MGI:1921765 [details] [associations]
symbol:Cdkal1 "CDK5 regulatory subunit associated protein
1-like 1" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 MGI:MGI:1921765 GO:GO:0016021
GO:GO:0005789 GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0008033 eggNOG:COG0621 GeneTree:ENSGT00530000063447
HOGENOM:HOG000224768 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 HOVERGEN:HBG097712 KO:K15865
GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938
OrthoDB:EOG4RJG1D EMBL:AK004490 EMBL:AK041864 EMBL:AK045506
EMBL:AK082629 EMBL:AK169761 EMBL:AL513025 EMBL:AL512647
EMBL:AL589701 EMBL:AL645587 EMBL:BC016073 IPI:IPI00163015
IPI:IPI00515329 IPI:IPI00648337 IPI:IPI00857573 IPI:IPI00857859
RefSeq:NP_653119.1 UniGene:Mm.212227 ProteinModelPortal:Q91WE6
STRING:Q91WE6 PhosphoSite:Q91WE6 PRIDE:Q91WE6 DNASU:68916
Ensembl:ENSMUST00000006353 Ensembl:ENSMUST00000091674
Ensembl:ENSMUST00000137225 Ensembl:ENSMUST00000140278 GeneID:68916
KEGG:mmu:68916 UCSC:uc007pyn.1 UCSC:uc007pyo.1 UCSC:uc007pyp.1
InParanoid:Q91WE6 NextBio:328171 Bgee:Q91WE6 Genevestigator:Q91WE6
Uniprot:Q91WE6
Length = 578
Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
Identities = 249/489 (50%), Positives = 340/489 (69%)
Query: 1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDST-IPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK-- 178
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 179 ---LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDII 362
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDLSRV 422
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 473
F ++ PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 423 FHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIYESG 482
Query: 474 RWSVFGEVI 482
+ + G+ +
Sbjct: 483 KHFLKGQPV 491
>ZFIN|ZDB-GENE-040426-1443 [details] [associations]
symbol:cdkal1 "CDK5 regulatory subunit associated
protein 1-like 1" species:7955 "Danio rerio" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0043412 "macromolecule modification" evidence=IEA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 ZFIN:ZDB-GENE-040426-1443 GO:GO:0016021 GO:GO:0005789
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0008033
HOGENOM:HOG000224768 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 EMBL:BC057248 IPI:IPI00510915 RefSeq:NP_956921.1
UniGene:Dr.118384 ProteinModelPortal:Q6PG34 PRIDE:Q6PG34
GeneID:393600 KEGG:dre:393600 CTD:54901 HOVERGEN:HBG097712
InParanoid:Q6PG34 KO:K15865 NextBio:20814618 ArrayExpress:Q6PG34
GO:GO:0009451 TIGRFAMs:TIGR00089 Uniprot:Q6PG34
Length = 547
Score = 1242 (442.3 bits), Expect = 1.8e-126, P = 1.8e-126
Identities = 241/456 (52%), Positives = 323/456 (70%)
Query: 38 PRLHDNHLSKTGS---LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE 94
PR H +TG IPG + +++KT+GCSHN SD EYMAGQL+ GY +T++S
Sbjct: 36 PRAR-KHKQETGEQMQTDSVIPGMQKVWLKTWGCSHNSSDGEYMAGQLAVAGYQITEDSS 94
Query: 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
+AD+WL+N+CTVKSP++ I K + K +V+AGCVPQ + ++ +SI+GVQQ
Sbjct: 95 DADLWLLNSCTVKSPAEDHFRNAIRKAQEQNKKVVLAGCVPQAQPRMDYIKDLSIIGVQQ 154
Query: 155 IDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACT 207
IDRVVEVV+E +KGH VRLL +KK LDLPK+R+N +EI+ IN GCL ACT
Sbjct: 155 IDRVVEVVDEAIKGHSVRLLGQKKEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACT 214
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
YCKTKHARG L SY VE LV RVR +GV E+WL+SEDTGAYGRDIG +LP LL +V
Sbjct: 215 YCKTKHARGDLASYPVEELVERVRQSFQEGVCEIWLTSEDTGAYGRDIGSDLPTLLWRLV 274
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
E+P +G+ MLR+GMTNPP+ILEHL+E++ +L+HP V+SFLHVP+QS SD+VL M REY
Sbjct: 275 EEIP-EGA-MLRLGMTNPPYILEHLEEMSRILQHPRVFSFLHVPLQSASDSVLMEMRREY 332
Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
+DF +VD L E VPG+ IATDIICGFPGETDEDF QT+ L++ Y+FP + I+QFYPR
Sbjct: 333 CCADFTHLVDYLKERVPGITIATDIICGFPGETDEDFEQTLALVRRYRFPSLFINQFYPR 392
Query: 388 PGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTK 447
PGTPAA M+++P+ V K+R++EL+++F ++ PY G +++ +TE + D + V H K
Sbjct: 393 PGTPAALMQQLPAHVKKQRTKELSALFHSYRPYDHKMGEQQQVLVTEESFDSQYYVAHNK 452
Query: 448 GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 483
Y QVLVP LG V++ G+ + G ++
Sbjct: 453 FYEQVLVPKRPEYLGKMVQVEVYECGKHYMKGRPLE 488
>WB|WBGene00022363 [details] [associations]
symbol:Y92H12BL.1 species:6239 "Caenorhabditis elegans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR020612 Pfam:PF04055 PROSITE:PS01278
SMART:SM00729 GO:GO:0016021 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0008033 EMBL:FO081632 RefSeq:NP_740783.2
ProteinModelPortal:Q8MXQ7 SMR:Q8MXQ7 STRING:Q8MXQ7 PaxDb:Q8MXQ7
EnsemblMetazoa:Y92H12BL.1 GeneID:190786 KEGG:cel:CELE_Y92H12BL.1
UCSC:Y92H12BL.1 CTD:190786 WormBase:Y92H12BL.1 eggNOG:COG0621
GeneTree:ENSGT00530000063447 HOGENOM:HOG000224768 InParanoid:Q8MXQ7
OMA:ILVPLEY NextBio:946956 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 Uniprot:Q8MXQ7
Length = 425
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 185/358 (51%), Positives = 254/358 (70%)
Query: 130 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVR 188
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + A L LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLPKMR 60
Query: 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSED 247
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R D GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVKELWLTSED 120
Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
GA+GRDIG+ LP LL +V +P DGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLRELVKVIP-DGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 308 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367
LH+PVQS SDAVL+ M REY+ F + D +I VP + IATD+I FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIATDMILAFPTETLEDFEES 238
Query: 368 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GR 426
+ L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++ +F ++T Y G
Sbjct: 239 MELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRYTDERIGE 298
Query: 427 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 484
+ R+ +TE+AAD +H VGH K Y Q+LVP +G V++T+V ++S+ + I
Sbjct: 299 LHRVLVTEVAADKLHGVGHNKSYEQILVPLEYCKMGEWIEVRVTAVTKFSMISKPASI 356
>UNIPROTKB|F1LV76 [details] [associations]
symbol:F1LV76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA]
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
IPI:IPI00190732 ProteinModelPortal:F1LV76
Ensembl:ENSRNOT00000024854 Uniprot:F1LV76
Length = 164
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 111/166 (66%), Positives = 140/166 (84%)
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A
Sbjct: 1 GVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMA 58
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGF
Sbjct: 59 KILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICGF 118
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
PGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V
Sbjct: 119 PGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHV 164
>TIGR_CMR|CHY_0419 [details] [associations]
symbol:CHY_0419 "MiaB-like tRNA modifying enzyme"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_359280.1 ProteinModelPortal:Q3AF04 STRING:Q3AF04
GeneID:3727815 KEGG:chy:CHY_0419 PATRIC:21273999 OMA:SEFNERS
BioCyc:CHYD246194:GJCN-420-MONOMER Uniprot:Q3AF04
Length = 434
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 141/432 (32%), Positives = 225/432 (52%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E + G GY + D S+ ADI++INTCTV S +I K
Sbjct: 8 TLGCKVNQYETEALKGAFLEKGYEIVDFSDYADIYVINTCTVTHLSDRKSRQMIRKAVQK 67
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH-EVRLL--HRK 177
VVA GC Q ++ ++ V++V G +R+VE+VE+ L+ ++ + +
Sbjct: 68 NPRAVVAAVGCYAQVAPEEILKIPEVNLVLGTVHKNRLVELVEKVLRERTKINAVASFEE 127
Query: 178 KLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
L ++P K+ K + I GC C YC +ARG L S +E +V V+ +
Sbjct: 128 LLEFEEMPLKLAPGKARAFVKIQEGCNSYCAYCIIPYARGPLRSRPLEDVVAEVKKLCQS 187
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL--PPDGSTMLRIGMTNPPFILEHLKE 294
G E+ L+ TGAYG++ +LP L + +VAEL P+ LR+ P + E
Sbjct: 188 GFSEIVLTGIHTGAYGQE-KQDLPKLAD-LVAELFKIPE-LKRLRLSSIEPQ---DFTVE 241
Query: 295 IAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+ +VL + P LH+P+QSG D +L AM R+YT ++ +++T+ E +P + + +D+I
Sbjct: 242 LLDVLANSPKFCRHLHLPLQSGDDDILKAMRRKYTSYEYLRLIETIRERIPDIALTSDVI 301
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 412
GFPGET+E F T NL+K+ F +H+ ++ PR GTPAA+M ++P ++RS L +
Sbjct: 302 VGFPGETEEQFLNTYNLVKKVGFMDIHVFKYSPRAGTPAAKMPGQIPEREKERRSLLLLN 361
Query: 413 VFEA-FTPYLG-MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 470
+ E F Y G++ + E +G GH+ Y++V G VKIT
Sbjct: 362 LKEELFKNYASKFLGKILEVIPEEQDTEGFW-EGHSDNYLRVKFSGNNIKRGEIYPVKIT 420
Query: 471 SVGRWSVFGEVI 482
+ V GE++
Sbjct: 421 EMKEGYVSGELV 432
>UNIPROTKB|Q81LS6 [details] [associations]
symbol:BAS4209 "Uncharacterized protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 RefSeq:NP_846758.1 RefSeq:YP_021181.1
RefSeq:YP_030457.1 ProteinModelPortal:Q81LS6 DNASU:1088268
EnsemblBacteria:EBBACT00000008940 EnsemblBacteria:EBBACT00000017843
EnsemblBacteria:EBBACT00000022379 GeneID:1088268 GeneID:2819009
GeneID:2848800 KEGG:ban:BA_4535 KEGG:bar:GBAA_4535 KEGG:bat:BAS4209
BioCyc:BANT260799:GJAJ-4265-MONOMER
BioCyc:BANT261594:GJ7F-4411-MONOMER Uniprot:Q81LS6
Length = 450
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 140/431 (32%), Positives = 219/431 (50%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTP-YLGM-EGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 462
L + Y EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 463 TSALVKITSVG 473
VKI G
Sbjct: 417 KLVKVKIMKAG 427
>TIGR_CMR|BA_4535 [details] [associations]
symbol:BA_4535 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0051539
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 RefSeq:NP_846758.1 RefSeq:YP_021181.1
RefSeq:YP_030457.1 ProteinModelPortal:Q81LS6 DNASU:1088268
EnsemblBacteria:EBBACT00000008940 EnsemblBacteria:EBBACT00000017843
EnsemblBacteria:EBBACT00000022379 GeneID:1088268 GeneID:2819009
GeneID:2848800 KEGG:ban:BA_4535 KEGG:bar:GBAA_4535 KEGG:bat:BAS4209
BioCyc:BANT260799:GJAJ-4265-MONOMER
BioCyc:BANT261594:GJ7F-4411-MONOMER Uniprot:Q81LS6
Length = 450
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 140/431 (32%), Positives = 219/431 (50%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTP-YLGM-EGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 462
L + Y EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 463 TSALVKITSVG 473
VKI G
Sbjct: 417 KLVKVKIMKAG 427
>UNIPROTKB|O31778 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:224308 "Bacillus subtilis
subsp. subtilis str. 168" [GO:0035597 "N6-isopentenyladenosine
methylthiotransferase activity" evidence=IMP] [GO:0035600 "tRNA
methylthiolation" evidence=IMP] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0051539 EMBL:AL009126 GenomeReviews:AL009126_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14327 PIR:D69884 RefSeq:NP_389583.1
ProteinModelPortal:O31778 SMR:O31778
EnsemblBacteria:EBBACT00000002125 GeneID:939451 KEGG:bsu:BSU17010
PATRIC:18975209 GenoList:BSU17010 BioCyc:BSUB:BSU17010-MONOMER
GO:GO:0035597 Uniprot:O31778
Length = 509
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 135/437 (30%), Positives = 223/437 (51%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 69 YIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGHL 128
Query: 122 KSAKK--P---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
K+ KK P L V GC+ Q +R LK+ V ++ G I R+ E++ E E+
Sbjct: 129 KALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKEM 188
Query: 172 RL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + K+ ++ LPKVR K + I GC CTYC + RG S E ++
Sbjct: 189 VVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQE 248
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 249 VRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDFD 307
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 308 DRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASLT 365
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R +
Sbjct: 366 TDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERLQ 425
Query: 409 ELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 465
L ++ + EG+V + + E + L G+T+ V +G
Sbjct: 426 RLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKIV 485
Query: 466 LVKITSVGRWSVFGEVI 482
VKI WS+ GE++
Sbjct: 486 RVKIQQAKTWSLDGEMV 502
>UNIPROTKB|P54462 [details] [associations]
symbol:mtaB "Threonylcarbamoyladenosine tRNA
methylthiotransferase MtaB" species:224308 "Bacillus subtilis
subsp. subtilis str. 168" [GO:0035598 "N6-threonylcarbomyladenosine
methylthiotransferase activity" evidence=IMP] [GO:0035600 "tRNA
methylthiolation" evidence=IMP] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0051539 EMBL:AL009126 GenomeReviews:AL009126_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:D84432 TIGRFAMs:TIGR01579 EMBL:D83717 PIR:E69952
RefSeq:NP_390421.1 ProteinModelPortal:P54462 SMR:P54462
EnsemblBacteria:EBBACT00000000539 GeneID:937857 KEGG:bsu:BSU25430
PATRIC:18976924 GenoList:BSU25430 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 BioCyc:BSUB:BSU25430-MONOMER GO:GO:0035598
Uniprot:P54462
Length = 451
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 139/459 (30%), Positives = 231/459 (50%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL+ + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQIT 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 408 RELTSVFEAFTP-YLGM-EGRVERIWITEIAADGIH----LVGHTKGYVQVLVPSTGNML 461
L ++ + Y E V I I E A VG+T Y++V+ T +M+
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEI-IPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMI 415
Query: 462 GTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 500
G VKI G G+ +++ V+D+I + R+SS
Sbjct: 416 GKIVKVKILKAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>UNIPROTKB|Q81WR0 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:1392 "Bacillus anthracis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:NP_846155.1
RefSeq:YP_020548.1 RefSeq:YP_029874.1 ProteinModelPortal:Q81WR0
DNASU:1087981 EnsemblBacteria:EBBACT00000011059
EnsemblBacteria:EBBACT00000018590 EnsemblBacteria:EBBACT00000019692
GeneID:1087981 GeneID:2814749 GeneID:2848443 KEGG:ban:BA_3908
KEGG:bar:GBAA_3908 KEGG:bat:BAS3621 ProtClustDB:PRK14327
BioCyc:BANT260799:GJAJ-3680-MONOMER
BioCyc:BANT261594:GJ7F-3797-MONOMER Uniprot:Q81WR0
Length = 509
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 134/447 (29%), Positives = 230/447 (51%)
Query: 57 GT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
GT Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ +
Sbjct: 63 GTGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVF 122
Query: 116 TLIAKCKSAKKP----LV-VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEET 165
+ KS K+ L+ V GC+ Q ++ +++ + V +V G I R+ ++++
Sbjct: 123 GELGHLKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDA 182
Query: 166 LKGHEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ E + + K+ ++ LPKVRR + I GC CTYC + RG S
Sbjct: 183 MFSKETVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRP 242
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
E ++ +R + A+G KE+ L ++ AYG+D ++ L ++ EL +R +
Sbjct: 243 EDIIQEIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTS 301
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P +HL E+ + + +H+PVQSGS +L M R+Y+ + +V + E +
Sbjct: 302 HPRDFDDHLIEVLG--KGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAI 359
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
P + TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V
Sbjct: 360 PNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEV 419
Query: 403 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 456
K+R + L ++ + R + I E+ DG L G+T+ V +
Sbjct: 420 KKERLQRLNALVNKLA--IEKNDRYKG-QIVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 457 TGNMLGTSALVKITSVGRWSVFGEVIK 483
+++G +K+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKIKVTDAKTWSLNGELVE 503
>TIGR_CMR|BA_3908 [details] [associations]
symbol:BA_3908 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:NP_846155.1
RefSeq:YP_020548.1 RefSeq:YP_029874.1 ProteinModelPortal:Q81WR0
DNASU:1087981 EnsemblBacteria:EBBACT00000011059
EnsemblBacteria:EBBACT00000018590 EnsemblBacteria:EBBACT00000019692
GeneID:1087981 GeneID:2814749 GeneID:2848443 KEGG:ban:BA_3908
KEGG:bar:GBAA_3908 KEGG:bat:BAS3621 ProtClustDB:PRK14327
BioCyc:BANT260799:GJAJ-3680-MONOMER
BioCyc:BANT261594:GJ7F-3797-MONOMER Uniprot:Q81WR0
Length = 509
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 134/447 (29%), Positives = 230/447 (51%)
Query: 57 GT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
GT Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ +
Sbjct: 63 GTGRKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVF 122
Query: 116 TLIAKCKSAKKP----LV-VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEET 165
+ KS K+ L+ V GC+ Q ++ +++ + V +V G I R+ ++++
Sbjct: 123 GELGHLKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDA 182
Query: 166 LKGHEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ E + + K+ ++ LPKVRR + I GC CTYC + RG S
Sbjct: 183 MFSKETVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRP 242
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
E ++ +R + A+G KE+ L ++ AYG+D ++ L ++ EL +R +
Sbjct: 243 EDIIQEIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTS 301
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P +HL E+ + + +H+PVQSGS +L M R+Y+ + +V + E +
Sbjct: 302 HPRDFDDHLIEVLG--KGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAI 359
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
P + TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V
Sbjct: 360 PNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEV 419
Query: 403 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 456
K+R + L ++ + R + I E+ DG L G+T+ V +
Sbjct: 420 KKERLQRLNALVNKLA--IEKNDRYKG-QIVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 457 TGNMLGTSALVKITSVGRWSVFGEVIK 483
+++G +K+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKIKVTDAKTWSLNGELVE 503
>TIGR_CMR|CHY_1398 [details] [associations]
symbol:CHY_1398 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:YP_360230.1
ProteinModelPortal:Q3ACA4 STRING:Q3ACA4 GeneID:3726945
KEGG:chy:CHY_1398 PATRIC:21275927 ProtClustDB:PRK14328
BioCyc:CHYD246194:GJCN-1397-MONOMER TIGRFAMs:TIGR01579
Uniprot:Q3ACA4
Length = 440
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 132/430 (30%), Positives = 224/430 (52%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T GC N DSE +AG L + G+ + + AD+ +INTC+V+ +++ + T I
Sbjct: 4 KSYYIITHGCQMNVHDSETIAGILESMGFVPSPEEKTADLIIINTCSVRETAENKVFTKI 63
Query: 119 AKCKSAKK--P-LV--VAGCVPQGSRDLKEL-EGVS----IVGVQQIDRVVEVVEETLKG 168
+ K K+ P LV V GC+PQ + K L E I G + + +++E +
Sbjct: 64 GELKKLKRENPDLVIGVGGCIPQQEKVAKRLLERFPHLDFIFGTHNLPELPKILERVFEK 123
Query: 169 HEVRLLH--RKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVES 225
HE R+L + + ++ V+R V + I GC CTYC + RG S E
Sbjct: 124 HE-RVLEVWQSEGQIVEGIPVKREPGVRAWVTIMYGCNNFCTYCIVPYVRGRERSRKKED 182
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
++ +R ++A+G +EV L ++ +YG+D+ P+ ++A++ DG +R ++
Sbjct: 183 ILQEIRQLVAEGYREVTLLGQNVNSYGKDLK-GKPMFAE-LLADIEKIDGLWRVRFTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + + + E+ R C + LH+PVQ+GS+ +L AM+R YT + +V+ + +P
Sbjct: 241 PRDLTDDVIEVMASSRKICEH--LHLPVQAGSNKILKAMHRGYTREYYLNLVEKIRAKIP 298
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
+ TDII GFPGET+EDF QT++L+++ ++ + R GTPAA MK +VP V
Sbjct: 299 KVSFTTDIIVGFPGETEEDFEQTLDLVRKVRYDSAFTFVYNKRTGTPAAEMKDQVPEEVK 358
Query: 404 KKRSRELTSVFEAFTPYLGM--EGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNM 460
+R +EL + + L EG + I + + D L G T+ V+ ++
Sbjct: 359 SRRIQELIELQNGISLELNKNEEGNIHEILVEGKSKTDETKLAGRTRTNKLVVFNGNEDL 418
Query: 461 LGTSALVKIT 470
+G VKIT
Sbjct: 419 VGKLVKVKIT 428
>UNIPROTKB|P0AEI1 [details] [associations]
symbol:miaB "isopentenyl-adenosine A37 tRNA methylthiolase
MiaB" species:83333 "Escherichia coli K-12" [GO:0043412
"macromolecule modification" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 EMBL:U82598 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:C64801 RefSeq:NP_415194.1 RefSeq:YP_488952.1
ProteinModelPortal:P0AEI1 SMR:P0AEI1 DIP:DIP-48018N IntAct:P0AEI1
MINT:MINT-1233637 PaxDb:P0AEI1 PRIDE:P0AEI1
EnsemblBacteria:EBESCT00000004746 EnsemblBacteria:EBESCT00000015136
GeneID:12932238 GeneID:945260 KEGG:ecj:Y75_p0651 KEGG:eco:b0661
PATRIC:32116511 EchoBASE:EB3421 EcoGene:EG13657
BioCyc:EcoCyc:G6364-MONOMER BioCyc:ECOL316407:JW0658-MONOMER
BioCyc:MetaCyc:G6364-MONOMER Genevestigator:P0AEI1 Uniprot:P0AEI1
Length = 474
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 148/469 (31%), Positives = 239/469 (50%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCK--SAKKP-LV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K K P L+ V GCV +G + V I+ G Q + R+ E++ +++G
Sbjct: 62 QLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN-SVRG 120
Query: 169 HEVRLLHRK--KLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
++ ++ D LP+ R + I GC CTYC + RG S +
Sbjct: 121 DRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDD 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAY-GRDI-GVNLPIL-LNAIVAELPPDGSTMLRIGM 282
++ + + A GV+EV L ++ A+ G + G L +VA + DG +R
Sbjct: 181 ILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAI--DGIDRIRFTT 238
Query: 283 TNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P +E +I EV R P + SFLH+PVQSGSD +L+ M R +T +++ ++ L
Sbjct: 239 SHP---IEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRA 295
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPS 400
P +QI++D I GFPGET EDF +T+ LI + F + F RPGTPAA M VP
Sbjct: 296 ARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPE 355
Query: 401 AVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVLVPST 457
K+R L +A M G +RI + + I L G T+ V T
Sbjct: 356 EEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGT 415
Query: 458 GNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASN-RRISSQVRQD 505
+M+G V+IT V S+ G+V++ +++ ++A + ++ R++
Sbjct: 416 PDMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRVAETPESVIARTRKE 464
>UNIPROTKB|Q74A23 [details] [associations]
symbol:mtaB "tRNA (2-methylthio-N6-threonylcarbamyl-A37)
methylthiotransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0009451 TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579
HOGENOM:HOG000224765 OMA:VITFGCR RefSeq:NP_953614.1
ProteinModelPortal:Q74A23 GeneID:2686393 KEGG:gsu:GSU2568
PATRIC:22027987 ProtClustDB:CLSK828892
BioCyc:GSUL243231:GH27-2545-MONOMER Uniprot:Q74A23
Length = 434
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 135/425 (31%), Positives = 212/425 (49%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ + + T GC NQ +S M L G+ L +EADI++INTCTV + + + LI
Sbjct: 2 QRVAITTLGCKINQFESAAMTESLGREGFRLVPFEDEADIYVINTCTVTARTDAESRRLI 61
Query: 119 AKC--KSAKKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL- 173
+ ++ +VV GC Q + D + EL GVS +VG + + ++ + + ++ +
Sbjct: 62 RRAMRRNPAARVVVTGCYAQVAPDAVGELPGVSLVVGNSEKKGIAGLLRDAVPAEKILVS 121
Query: 174 -LHRKK-LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ R++ + AL L + L + GC C+YC HARG S ++ +
Sbjct: 122 DISRQRTVEALGLESFAEHTRA-FLQVQNGCDAFCSYCIVPHARGRSRSVPFRDVLEGIG 180
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFI 288
T G +EV L+ GAYG D+ +L LL A AE L P LR+G P I
Sbjct: 181 TFAYQGFREVVLTGIHLGAYGADLEPPASLLDLLEAADAEALVP----RLRVGSVEPHEI 236
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L IA + R P + LH+P+QSGSD+VL MNR YT + FR V+ L VP + I
Sbjct: 237 SDGL--IALMARSPVICPHLHIPLQSGSDSVLERMNRRYTAAFFRERVERLAAAVPDICI 294
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
D+I GFPGETDE+F T+ L++ +H+ F R GTPAARM +V +V++R+
Sbjct: 295 GCDVIAGFPGETDEEFAATLALLEGLPIAHLHVFPFSRREGTPAARMPGQVDGKIVRERA 354
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 467
L ++ + + + + G + G ++ Y+ V + + +V
Sbjct: 355 EVLRALSDRKRETFHRRFMGRDLPVLVLNGRGKEVTGLSRNYITVRIEAVTPPPEGEVMV 414
Query: 468 KITSV 472
+IT V
Sbjct: 415 RITGV 419
>TIGR_CMR|GSU_2568 [details] [associations]
symbol:GSU_2568 "MiaB-like tRNA modifying enzyme"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.80.30.20
InterPro:IPR023404 GO:GO:0009451 TIGRFAMs:TIGR00089
TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:VITFGCR
RefSeq:NP_953614.1 ProteinModelPortal:Q74A23 GeneID:2686393
KEGG:gsu:GSU2568 PATRIC:22027987 ProtClustDB:CLSK828892
BioCyc:GSUL243231:GH27-2545-MONOMER Uniprot:Q74A23
Length = 434
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 135/425 (31%), Positives = 212/425 (49%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ + + T GC NQ +S M L G+ L +EADI++INTCTV + + + LI
Sbjct: 2 QRVAITTLGCKINQFESAAMTESLGREGFRLVPFEDEADIYVINTCTVTARTDAESRRLI 61
Query: 119 AKC--KSAKKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL- 173
+ ++ +VV GC Q + D + EL GVS +VG + + ++ + + ++ +
Sbjct: 62 RRAMRRNPAARVVVTGCYAQVAPDAVGELPGVSLVVGNSEKKGIAGLLRDAVPAEKILVS 121
Query: 174 -LHRKK-LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ R++ + AL L + L + GC C+YC HARG S ++ +
Sbjct: 122 DISRQRTVEALGLESFAEHTRA-FLQVQNGCDAFCSYCIVPHARGRSRSVPFRDVLEGIG 180
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFI 288
T G +EV L+ GAYG D+ +L LL A AE L P LR+G P I
Sbjct: 181 TFAYQGFREVVLTGIHLGAYGADLEPPASLLDLLEAADAEALVP----RLRVGSVEPHEI 236
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L IA + R P + LH+P+QSGSD+VL MNR YT + FR V+ L VP + I
Sbjct: 237 SDGL--IALMARSPVICPHLHIPLQSGSDSVLERMNRRYTAAFFRERVERLAAAVPDICI 294
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
D+I GFPGETDE+F T+ L++ +H+ F R GTPAARM +V +V++R+
Sbjct: 295 GCDVIAGFPGETDEEFAATLALLEGLPIAHLHVFPFSRREGTPAARMPGQVDGKIVRERA 354
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 467
L ++ + + + + G + G ++ Y+ V + + +V
Sbjct: 355 EVLRALSDRKRETFHRRFMGRDLPVLVLNGRGKEVTGLSRNYITVRIEAVTPPPEGEVMV 414
Query: 468 KITSV 472
+IT V
Sbjct: 415 RITGV 419
>UNIPROTKB|Q9KTE0 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:E82261 RefSeq:NP_230609.1 ProteinModelPortal:Q9KTE0
DNASU:2614215 GeneID:2614215 KEGG:vch:VC0962 PATRIC:20081024
Uniprot:Q9KTE0
Length = 474
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 150/469 (31%), Positives = 242/469 (51%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ + +KT+GC N+ DS MA L+A GY LT+ EEAD+ L+NTC+++ +Q +
Sbjct: 2 SKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAK--KPLVV---AGCVP--QGS--RDLKELEGVSIVGVQQIDRVVEVVEETLK 167
+ + K+ K KP VV GCV +G RD V I G Q + R+ E+++++
Sbjct: 62 QLGRWKTLKDKKPGVVIGVGGCVATQEGDSIRDRAPYVDV-IFGPQTLHRLPEMIKQSQT 120
Query: 168 GHE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
V + ++ D LP+ R + I GC CTYC + RG S ++
Sbjct: 121 SDAPVMDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDD 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAY-G--RDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
++ + + GV+EV L ++ AY G D G+ L +VA + DG +R
Sbjct: 181 VLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATI--DGIDRIRFTT 238
Query: 283 TNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P LE +I V P + SFLH+PVQSGSD +L+ M R +T ++++++ L +
Sbjct: 239 SHP---LEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRK 295
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
P +QI++D I GFPGETD+DF T+ LI++ F F PRPGTPAA S
Sbjct: 296 ARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSE 355
Query: 402 VVKK-RSRELTSVF--EAFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPST 457
VKK R EL +A M G +RI + + D + L G T+ V +
Sbjct: 356 EVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGS 415
Query: 458 GNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASN-RRISSQVRQD 505
+++G VKI V S+ GE+++ +++ +IA++ + ++ R++
Sbjct: 416 PDLIGQFVDVKIVDVFPNSLRGELLRTEQEMNLRIATSPSEMKAKTRRE 464
>TIGR_CMR|VC_0962 [details] [associations]
symbol:VC_0962 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:E82261 RefSeq:NP_230609.1 ProteinModelPortal:Q9KTE0
DNASU:2614215 GeneID:2614215 KEGG:vch:VC0962 PATRIC:20081024
Uniprot:Q9KTE0
Length = 474
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 150/469 (31%), Positives = 242/469 (51%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ + +KT+GC N+ DS MA L+A GY LT+ EEAD+ L+NTC+++ +Q +
Sbjct: 2 SKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAK--KPLVV---AGCVP--QGS--RDLKELEGVSIVGVQQIDRVVEVVEETLK 167
+ + K+ K KP VV GCV +G RD V I G Q + R+ E+++++
Sbjct: 62 QLGRWKTLKDKKPGVVIGVGGCVATQEGDSIRDRAPYVDV-IFGPQTLHRLPEMIKQSQT 120
Query: 168 GHE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
V + ++ D LP+ R + I GC CTYC + RG S ++
Sbjct: 121 SDAPVMDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDD 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAY-G--RDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
++ + + GV+EV L ++ AY G D G+ L +VA + DG +R
Sbjct: 181 VLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATI--DGIDRIRFTT 238
Query: 283 TNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P LE +I V P + SFLH+PVQSGSD +L+ M R +T ++++++ L +
Sbjct: 239 SHP---LEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRK 295
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
P +QI++D I GFPGETD+DF T+ LI++ F F PRPGTPAA S
Sbjct: 296 ARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSE 355
Query: 402 VVKK-RSRELTSVF--EAFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPST 457
VKK R EL +A M G +RI + + D + L G T+ V +
Sbjct: 356 EVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGS 415
Query: 458 GNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASN-RRISSQVRQD 505
+++G VKI V S+ GE+++ +++ +IA++ + ++ R++
Sbjct: 416 PDLIGQFVDVKIVDVFPNSLRGELLRTEQEMNLRIATSPSEMKAKTRRE 464
>UNIPROTKB|Q83DX3 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:227377 "Coxiella burnetii RSA
493" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_819599.1 ProteinModelPortal:Q83DX3
PRIDE:Q83DX3 GeneID:1208454 KEGG:cbu:CBU_0569 PATRIC:17929837
BioCyc:CBUR227377:GJ7S-573-MONOMER Uniprot:Q83DX3
Length = 439
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 136/440 (30%), Positives = 224/440 (50%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLS-AFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KT GC N+ DS MA L + G LT++ AD++L+NTC+V+ +Q+ + + +
Sbjct: 4 LYLKTHGCQMNEYDSAKMADVLKFSHGLELTEDPAVADVFLLNTCSVREKAQTKVFSELG 63
Query: 120 KCK--SAKKPLVV---AGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETL-KGHE 170
+ + K+P VV GCV +G LK+ V IV G Q + R+ ++++ + K
Sbjct: 64 RWRPFKEKRPHVVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHRLPDLLDSVIQKRKS 123
Query: 171 VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
V + ++ D LP+ R + I GC CT+C + RG S + ++
Sbjct: 124 VVDITFPEIEKFDRLPQPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEEISRPFDDVIAE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAY-G--RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNP 285
V ++ GV+E+ L ++ Y G D V +L +L++ + A D +R ++P
Sbjct: 184 VASLCEQGVREITLLGQNVNDYRGLMHDGQVADLALLIHYLAAM---DNIERIRFTTSHP 240
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
E+L I P + + LH+PVQSGSD +L+AM R YT+ ++++ + L + P
Sbjct: 241 SAFSENL--IDAYAEEPKLANHLHLPVQSGSDRILAAMKRNYTVLEYKSKIRKLRAVRPD 298
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVK 404
+ +++D I GFPGETD DF T+NLI + F + PRPGTPAA++ VP AV K
Sbjct: 299 ISLSSDFIIGFPGETDADFEATMNLIHDMGFDHSFSFIYSPRPGTPAAQLPDDVPMAVKK 358
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD-GIHLVGHTKGYVQVLVPSTGNML 461
+R L + A + M G +RI +T + L G T+ V ++
Sbjct: 359 ERLAILQNRINAKAAEISQSMVGTQQRILVTGPSKKYPDQLSGRTENNRVVNFNGDTPLI 418
Query: 462 GTSALVKITSVGRWSVFGEV 481
G +KI +S++GE+
Sbjct: 419 GQMVTIKIKEARPYSLWGEI 438
>TIGR_CMR|CBU_0569 [details] [associations]
symbol:CBU_0569 "conserved hypothetical protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_819599.1 ProteinModelPortal:Q83DX3
PRIDE:Q83DX3 GeneID:1208454 KEGG:cbu:CBU_0569 PATRIC:17929837
BioCyc:CBUR227377:GJ7S-573-MONOMER Uniprot:Q83DX3
Length = 439
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 136/440 (30%), Positives = 224/440 (50%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLS-AFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KT GC N+ DS MA L + G LT++ AD++L+NTC+V+ +Q+ + + +
Sbjct: 4 LYLKTHGCQMNEYDSAKMADVLKFSHGLELTEDPAVADVFLLNTCSVREKAQTKVFSELG 63
Query: 120 KCK--SAKKPLVV---AGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETL-KGHE 170
+ + K+P VV GCV +G LK+ V IV G Q + R+ ++++ + K
Sbjct: 64 RWRPFKEKRPHVVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHRLPDLLDSVIQKRKS 123
Query: 171 VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
V + ++ D LP+ R + I GC CT+C + RG S + ++
Sbjct: 124 VVDITFPEIEKFDRLPQPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEEISRPFDDVIAE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAY-G--RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNP 285
V ++ GV+E+ L ++ Y G D V +L +L++ + A D +R ++P
Sbjct: 184 VASLCEQGVREITLLGQNVNDYRGLMHDGQVADLALLIHYLAAM---DNIERIRFTTSHP 240
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
E+L I P + + LH+PVQSGSD +L+AM R YT+ ++++ + L + P
Sbjct: 241 SAFSENL--IDAYAEEPKLANHLHLPVQSGSDRILAAMKRNYTVLEYKSKIRKLRAVRPD 298
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVK 404
+ +++D I GFPGETD DF T+NLI + F + PRPGTPAA++ VP AV K
Sbjct: 299 ISLSSDFIIGFPGETDADFEATMNLIHDMGFDHSFSFIYSPRPGTPAAQLPDDVPMAVKK 358
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD-GIHLVGHTKGYVQVLVPSTGNML 461
+R L + A + M G +RI +T + L G T+ V ++
Sbjct: 359 ERLAILQNRINAKAAEISQSMVGTQQRILVTGPSKKYPDQLSGRTENNRVVNFNGDTPLI 418
Query: 462 GTSALVKITSVGRWSVFGEV 481
G +KI +S++GE+
Sbjct: 419 GQMVTIKIKEARPYSLWGEI 438
>UNIPROTKB|Q74B44 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_953247.1 ProteinModelPortal:Q74B44
GeneID:2685659 KEGG:gsu:GSU2198 PATRIC:22027253
BioCyc:GSUL243231:GH27-2215-MONOMER Uniprot:Q74B44
Length = 446
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 136/439 (30%), Positives = 221/439 (50%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++TFGC N +DSE +A L GY TD+ E AD+ ++NTC+V++ ++ + + +
Sbjct: 7 LYVETFGCQMNVNDSEKIATLLKDEGYLPTDDPERADLVILNTCSVRAKAEQKVYGHLGR 66
Query: 121 CK---SAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 169
K S KK + V GCV Q G R L+++ + +V G + + E+V +G
Sbjct: 67 FKGVRSRKKGFLLGVGGCVAQQEGERLLQKVPWLDLVFGTHNLHLLPEIVRAAERGERRA 126
Query: 170 EVRLLHRKKLPALDL-PKVRRNKFV-EILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
EV + + LDL P+ V + + GC C+YC + RG S ++
Sbjct: 127 EVGFIDNET--RLDLFPETGGEGGVTRFVTVMQGCDNFCSYCIVPYVRGREISRRSSDII 184
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPP 286
VR +A+GVKEV L ++ +YG L L +AE+ +G +R ++P
Sbjct: 185 DEVRKSVAEGVKEVTLLGQNVNSYGLKTEGELSFAGLIRRIAEV--EGLERIRFTTSHPK 242
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
I L IA P + +H+P QSGSDAVL+ MNR YT + + V+ L PG+
Sbjct: 243 DISPEL--IACFAEVPKLCGHIHLPAQSGSDAVLARMNRGYTRAGYLEKVEALRAARPGI 300
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK- 405
Q D+I GFPGET+EDF T++L++E ++ + + PRP T AA ++ S K+
Sbjct: 301 QFTGDMIVGFPGETEEDFQATISLMEEVRYADLFSFIYSPRPETAAAGIRDTVSRKEKQS 360
Query: 406 RSRELTSVFEAFTPY--LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 463
R L ++ + + G + + + ++ G L G G V + +++GT
Sbjct: 361 RLDRLQTLQQQMKRERNISFVGTRQLVLVEGVSKRGDQLYGRIDGNRIVNFAADQSLIGT 420
Query: 464 SALVKITSVGRWSVFGEVI 482
A V IT + S+ GE++
Sbjct: 421 MAEVTITQDYQNSLLGEIV 439
>TIGR_CMR|GSU_2198 [details] [associations]
symbol:GSU_2198 "tRNA-i(6)A37 modification enzyme MiaB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_953247.1 ProteinModelPortal:Q74B44
GeneID:2685659 KEGG:gsu:GSU2198 PATRIC:22027253
BioCyc:GSUL243231:GH27-2215-MONOMER Uniprot:Q74B44
Length = 446
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 136/439 (30%), Positives = 221/439 (50%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++TFGC N +DSE +A L GY TD+ E AD+ ++NTC+V++ ++ + + +
Sbjct: 7 LYVETFGCQMNVNDSEKIATLLKDEGYLPTDDPERADLVILNTCSVRAKAEQKVYGHLGR 66
Query: 121 CK---SAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 169
K S KK + V GCV Q G R L+++ + +V G + + E+V +G
Sbjct: 67 FKGVRSRKKGFLLGVGGCVAQQEGERLLQKVPWLDLVFGTHNLHLLPEIVRAAERGERRA 126
Query: 170 EVRLLHRKKLPALDL-PKVRRNKFV-EILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
EV + + LDL P+ V + + GC C+YC + RG S ++
Sbjct: 127 EVGFIDNET--RLDLFPETGGEGGVTRFVTVMQGCDNFCSYCIVPYVRGREISRRSSDII 184
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPP 286
VR +A+GVKEV L ++ +YG L L +AE+ +G +R ++P
Sbjct: 185 DEVRKSVAEGVKEVTLLGQNVNSYGLKTEGELSFAGLIRRIAEV--EGLERIRFTTSHPK 242
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
I L IA P + +H+P QSGSDAVL+ MNR YT + + V+ L PG+
Sbjct: 243 DISPEL--IACFAEVPKLCGHIHLPAQSGSDAVLARMNRGYTRAGYLEKVEALRAARPGI 300
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK- 405
Q D+I GFPGET+EDF T++L++E ++ + + PRP T AA ++ S K+
Sbjct: 301 QFTGDMIVGFPGETEEDFQATISLMEEVRYADLFSFIYSPRPETAAAGIRDTVSRKEKQS 360
Query: 406 RSRELTSVFEAFTPY--LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 463
R L ++ + + G + + + ++ G L G G V + +++GT
Sbjct: 361 RLDRLQTLQQQMKRERNISFVGTRQLVLVEGVSKRGDQLYGRIDGNRIVNFAADQSLIGT 420
Query: 464 SALVKITSVGRWSVFGEVI 482
A V IT + S+ GE++
Sbjct: 421 MAEVTITQDYQNSLLGEIV 439
>TIGR_CMR|SO_1181 [details] [associations]
symbol:SO_1181 "tRNA-i(6)A37 modification enzyme MiaB"
species:211586 "Shewanella oneidensis MR-1" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_716806.1 ProteinModelPortal:Q8CX45
GeneID:1169010 KEGG:son:SO_1181 PATRIC:23522002 Uniprot:Q8CX45
Length = 474
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 142/471 (30%), Positives = 243/471 (51%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KT+GC N+ DS MA L + GY LT+ +EEADI L+NTC+++ +Q +
Sbjct: 2 SKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAK--KP-LV--VAGCVP-QGSRDLKE-LEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K+ K P L+ V GCV Q + +K+ + V I+ G Q + R+ E++E+ +G
Sbjct: 62 QLGRWKTLKDKNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQVRRG 121
Query: 169 HEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+ + + ++ D LP+ R + I GC C++C + RG S + +
Sbjct: 122 EKAVIDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEEVSRPSDDI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY-G--RDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + + GV+EV L ++ AY G D G+ L VA + DG +R +
Sbjct: 182 ILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAI--DGIDRIRFTTS 239
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P +E ++I +V P + SFLH+PVQSGSD +L+AM R + ++++++ L +
Sbjct: 240 HP---IEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRLRKA 296
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
P +QI++D I GFPGET EDF T+ LI++ F + RPGTPAA + P V
Sbjct: 297 RPDIQISSDFIIGFPGETQEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADL---PDDV 353
Query: 403 -VKKRSRELTSVFEAFTPYL-----GMEGRVERIWITEIAADG-IHLVGHTKGYVQVLVP 455
++++ + L + + T M G V+RI + + + L G T+ V
Sbjct: 354 DMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFE 413
Query: 456 STGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDK 506
+GT V+I V S+ G+ I+ +++D + N R S + + K
Sbjct: 414 GLPKHIGTFVDVEIVDVYTNSLRGKFIRGEDEMD--LRRNLRPSDILAKHK 462
>UNIPROTKB|Q747R0 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
RefSeq:NP_954246.1 ProteinModelPortal:Q747R0 GeneID:2688354
KEGG:gsu:GSU3205 PATRIC:22029265 ProtClustDB:CLSK829158
BioCyc:GSUL243231:GH27-3163-MONOMER Uniprot:Q747R0
Length = 447
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 117/366 (31%), Positives = 189/366 (51%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTL 117
E + M + GC N D+E M G+L+ Y +T + EADI ++NTC+ +K Q ++DT+
Sbjct: 6 EKVSMVSLGCPKNLVDAEVMLGRLAKDRYEITTDEREADIIIVNTCSFIKEAKQESIDTI 65
Query: 118 I----AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVVEE-TLKGH 169
+ K + L+V GC+PQ ++ +EL V I VG R+ E++EE + +
Sbjct: 66 LDLADRKQDGRCRLLIVTGCLPQRYQEELARELPEVDIFVGTGDYPRIAEIIEEKSSRPE 125
Query: 170 EVRLLHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
++R + D R N + L I GC C+YC RG S +ES+
Sbjct: 126 QLRYIGDPNF-VFDESLTRLNSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFRSRPLESV 184
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNP 285
+ R+++A G +E+ L ++D YGRD+ P L ++ EL DG +R+ P
Sbjct: 185 LAEARSLVAGGAREINLIAQDITTYGRDLP-GAPSL-ETLIRELAAIDGLAWIRLLYAYP 242
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
I + L I + P V +L +P+Q SD +L MNR T R +V L E +P
Sbjct: 243 DGITDGL--IQTIKNEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIRELVARLREEIPD 300
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ + T +I GFPGET+EDF ++ ++E +F ++ + + GTPAA M +V V +
Sbjct: 301 IALRTSLIVGFPGETEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPAAEMPDQVSERVKR 360
Query: 405 KRSREL 410
+R ++L
Sbjct: 361 ERYKKL 366
Score = 362 (132.5 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 114/414 (27%), Positives = 194/414 (46%)
Query: 90 TDNSEEADIWLINTCTVKSPSQSAMDTLI----AKCKSAKKPLVVAGCVPQGSRD--LKE 143
TD E I + +K Q ++DT++ K + L+V GC+PQ ++ +E
Sbjct: 38 TDEREADIIIVNTCSFIKEAKQESIDTILDLADRKQDGRCRLLIVTGCLPQRYQEELARE 97
Query: 144 LEGVSI-VGVQQIDRVVEVVEE-TLKGHEVRLLHRKKLPALDLPKVRRNK---FVEILPI 198
L V I VG R+ E++EE + + ++R + D R N + L I
Sbjct: 98 LPEVDIFVGTGDYPRIAEIIEEKSSRPEQLRYIGDPNF-VFDESLTRLNSSPAYTAYLKI 156
Query: 199 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN 258
GC C+YC RG S +ES++ R+++A G +E+ L ++D YGRD+
Sbjct: 157 AEGCSNCCSYCVIPSLRGAFRSRPLESVLAEARSLVAGGAREINLIAQDITTYGRDLP-G 215
Query: 259 LPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
P L ++ EL DG +R+ P I + L I + P V +L +P+Q SD
Sbjct: 216 APSL-ETLIRELAAIDGLAWIRLLYAYPDGITDGL--IQTIKNEPKVCKYLDLPIQHISD 272
Query: 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377
+L MNR T R +V L E +P + + T +I GFPGET+EDF ++ ++E +F
Sbjct: 273 PILKRMNRRSTEPQIRELVARLREEIPDIALRTSLIVGFPGETEEDFRTLLHFVEEAQFD 332
Query: 378 QVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITE 434
++ + + GTPAA M +V V ++R ++L +F + E++ +
Sbjct: 333 RLGVFCYSREEGTPAAEMPDQVSERVKRERYKKLMKAQARVSFKRNRRLIDTEEQVIVEG 392
Query: 435 IAADG-IHLVGHTKGYV-----QVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 482
+ + + L G + QV + + +G ++IT + + GE+I
Sbjct: 393 YSEETELLLKGRSSRQAPDIDGQVYITAGNANVGDIVRLRITDSSDYDLIGEII 446
>TIGR_CMR|GSU_3205 [details] [associations]
symbol:GSU_3205 "MiaB-like tRNA modifying enzyme YliG"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
RefSeq:NP_954246.1 ProteinModelPortal:Q747R0 GeneID:2688354
KEGG:gsu:GSU3205 PATRIC:22029265 ProtClustDB:CLSK829158
BioCyc:GSUL243231:GH27-3163-MONOMER Uniprot:Q747R0
Length = 447
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 117/366 (31%), Positives = 189/366 (51%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTL 117
E + M + GC N D+E M G+L+ Y +T + EADI ++NTC+ +K Q ++DT+
Sbjct: 6 EKVSMVSLGCPKNLVDAEVMLGRLAKDRYEITTDEREADIIIVNTCSFIKEAKQESIDTI 65
Query: 118 I----AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVVEE-TLKGH 169
+ K + L+V GC+PQ ++ +EL V I VG R+ E++EE + +
Sbjct: 66 LDLADRKQDGRCRLLIVTGCLPQRYQEELARELPEVDIFVGTGDYPRIAEIIEEKSSRPE 125
Query: 170 EVRLLHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
++R + D R N + L I GC C+YC RG S +ES+
Sbjct: 126 QLRYIGDPNF-VFDESLTRLNSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFRSRPLESV 184
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNP 285
+ R+++A G +E+ L ++D YGRD+ P L ++ EL DG +R+ P
Sbjct: 185 LAEARSLVAGGAREINLIAQDITTYGRDLP-GAPSL-ETLIRELAAIDGLAWIRLLYAYP 242
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
I + L I + P V +L +P+Q SD +L MNR T R +V L E +P
Sbjct: 243 DGITDGL--IQTIKNEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIRELVARLREEIPD 300
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ + T +I GFPGET+EDF ++ ++E +F ++ + + GTPAA M +V V +
Sbjct: 301 IALRTSLIVGFPGETEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPAAEMPDQVSERVKR 360
Query: 405 KRSREL 410
+R ++L
Sbjct: 361 ERYKKL 366
Score = 362 (132.5 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 114/414 (27%), Positives = 194/414 (46%)
Query: 90 TDNSEEADIWLINTCTVKSPSQSAMDTLI----AKCKSAKKPLVVAGCVPQGSRD--LKE 143
TD E I + +K Q ++DT++ K + L+V GC+PQ ++ +E
Sbjct: 38 TDEREADIIIVNTCSFIKEAKQESIDTILDLADRKQDGRCRLLIVTGCLPQRYQEELARE 97
Query: 144 LEGVSI-VGVQQIDRVVEVVEE-TLKGHEVRLLHRKKLPALDLPKVRRNK---FVEILPI 198
L V I VG R+ E++EE + + ++R + D R N + L I
Sbjct: 98 LPEVDIFVGTGDYPRIAEIIEEKSSRPEQLRYIGDPNF-VFDESLTRLNSSPAYTAYLKI 156
Query: 199 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN 258
GC C+YC RG S +ES++ R+++A G +E+ L ++D YGRD+
Sbjct: 157 AEGCSNCCSYCVIPSLRGAFRSRPLESVLAEARSLVAGGAREINLIAQDITTYGRDLP-G 215
Query: 259 LPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
P L ++ EL DG +R+ P I + L I + P V +L +P+Q SD
Sbjct: 216 APSL-ETLIRELAAIDGLAWIRLLYAYPDGITDGL--IQTIKNEPKVCKYLDLPIQHISD 272
Query: 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377
+L MNR T R +V L E +P + + T +I GFPGET+EDF ++ ++E +F
Sbjct: 273 PILKRMNRRSTEPQIRELVARLREEIPDIALRTSLIVGFPGETEEDFRTLLHFVEEAQFD 332
Query: 378 QVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITE 434
++ + + GTPAA M +V V ++R ++L +F + E++ +
Sbjct: 333 RLGVFCYSREEGTPAAEMPDQVSERVKRERYKKLMKAQARVSFKRNRRLIDTEEQVIVEG 392
Query: 435 IAADG-IHLVGHTKGYV-----QVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 482
+ + + L G + QV + + +G ++IT + + GE+I
Sbjct: 393 YSEETELLLKGRSSRQAPDIDGQVYITAGNANVGDIVRLRITDSSDYDLIGEII 446
>TIGR_CMR|SPO_A0002 [details] [associations]
symbol:SPO_A0002 "tRNA-i(6)A37 thiotransferase enzyme
MiaB" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:CP000032 GenomeReviews:CP000032_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:YP_164834.1 ProteinModelPortal:Q5LLM0
GeneID:3196777 KEGG:sil:SPOA0002 PATRIC:23381304 Uniprot:Q5LLM0
Length = 439
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 124/436 (28%), Positives = 207/436 (47%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++KT+GC N DSE MA L GY T ++E+AD+ L+NTC ++ + + + + +
Sbjct: 7 LFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAEKVYSELGR 66
Query: 121 CKSAK--KP---LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH--- 169
K K KP + VAGCV Q G ++ V +VG Q R+ E+ +T G
Sbjct: 67 FKGLKAAKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKTRAGEKAL 126
Query: 170 EVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ K L PK +R L + GC C +C + RG S + ++
Sbjct: 127 DTDFPEEDKFEKLKGRPKAKRGP-TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILR 185
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
++ GV+E+ L ++ AY G N + L ++ EL DG +R ++P
Sbjct: 186 EANELVERGVREITLLGQNVNAY-HGAGPNGDMTLAGLIWELDKIDGLERIRFTTSHPND 244
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + L E + +LH+PVQ+GSD +L MNR +T + +++ + P +
Sbjct: 245 MADDLIEAHGTCAK--LMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIERIRAARPDIV 302
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
++ D I GFP ET+ DF T++L+++ ++ + ++ RPGTPAA +V A R
Sbjct: 303 MSGDFIVGFPEETEADFQDTLDLVEQVRYGYAYSFKYSTRPGTPAAERAQVDPAEADDRL 362
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 465
+ L +V + GM GR + + +VG ++ V V G G A
Sbjct: 363 QRLQAVITRHQREIQDGMVGREVSVLFEKPGRQPGQMVGKSEYLHAVHVQDPGLEAGQIA 422
Query: 466 LVKITSVGRWSVFGEV 481
V+I + G S+ GE+
Sbjct: 423 RVRIVASGANSLAGEL 438
>UNIPROTKB|Q608N1 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243233 "Methylococcus
capsulatus str. Bath" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:AE017282 GenomeReviews:AE017282_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_113916.1 ProteinModelPortal:Q608N1 GeneID:3102404
KEGG:mca:MCA1459 PATRIC:22606754 Uniprot:Q608N1
Length = 458
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 136/453 (30%), Positives = 221/453 (48%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+ +Y++TFGC N+ DS M L + L + EEAD+ L+NTC+++ +Q + +
Sbjct: 3 QKLYIETFGCQMNEYDSAKMRDLLEVSDSFELARSPEEADVLLLNTCSIRDKAQEKVFSQ 62
Query: 118 IAKCKSAK--KPLVV---AGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ + + K +P VV GCV +G K V IV G Q + R+ ++E+
Sbjct: 63 LGRWRPIKLRRPEVVIGVGGCVASQEGEALQKRAPYVDIVFGPQTLHRLPSMLEQVRC-- 120
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R + PA++ LP+ R + + + GC CT+C + RG S V+
Sbjct: 121 ERRPVVDVSFPAIEKFDALPEPRADGPKAFVSVMEGCGKYCTFCVVPYTRGEEISRPVDD 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAY-G--RDIGV-NLPILLNAIVAELPPDGSTMLRIG 281
++ + + GV+EV L ++ AY G D G+ +L +L++ + A DG +R
Sbjct: 181 VIAEIVALAEQGVREVNLLGQNVNAYRGVLADGGMADLALLMHYVAAV---DGIDRIRFT 237
Query: 282 MTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
++P +E + E R P + S LH+PVQSGSD +L M R +T +++ V L
Sbjct: 238 TSHP---VEFSDALIEAFRDIPQLVSHLHLPVQSGSDRILRLMKRGHTRAEYMAKVAKLR 294
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VP 399
E+ P + +++D I GFPGETDEDF T+ LI++ F Q F RPGTPAA M VP
Sbjct: 295 EIRPDLSLSSDFIVGFPGETDEDFEDTMALIEQLGFDQSFSFIFSARPGTPAAAMADDVP 354
Query: 400 SAVVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH-LVGHTKGYVQVLVPS 456
+ R L + +G M G ++ + + + + L G T+ V
Sbjct: 355 PETKRARLARLQAKIADNAAKIGASMVGSIQSVLVEGTSRKNFNELSGRTENNRVVNFAG 414
Query: 457 TGNMLGTSALVKITSVGRWSVFGEVIKILNQVD 489
++G V IT S+ G +I + ++ D
Sbjct: 415 HPRLIGQFVDVVITESLPNSLRGRLIGVAHESD 447
>TIGR_CMR|CJE_0508 [details] [associations]
symbol:CJE_0508 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_178526.1 ProteinModelPortal:Q5HW09 STRING:Q5HW09
GeneID:3231269 KEGG:cjr:CJE0508 PATRIC:20042728
ProtClustDB:PRK14339 BioCyc:CJEJ195099:GJC0-518-MONOMER
Uniprot:Q5HW09
Length = 433
Score = 419 (152.6 bits), Expect = 3.0e-39, P = 3.0e-39
Identities = 123/437 (28%), Positives = 217/437 (49%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
++++T GC+ N DSE+M +L+ YALT++ +EAD+ LINTC+V+ + + +
Sbjct: 6 LFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSEVG 65
Query: 120 KCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ KK + V GC G+ K V V G + I ++ + ++ T K V +
Sbjct: 66 GFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIK-TPKFMGVDI 124
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ + A R + + + I++GC CTYC H RG S + +
Sbjct: 125 DYDESEFAF--ADFRNSIYKSYINISIGCDKHCTYCIVPHTRGDEISIPFNIIYKEAQKA 182
Query: 234 IADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNP-PFILEH 291
+ G KE++L ++ YG+ + + + ++ EL + RI T+P P ++
Sbjct: 183 VEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTI-EDLERIRFTSPHPLHMDD 241
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
K + +P V +H+P+QSGS +L AM R YT + L EL P + I+TD
Sbjct: 242 -KFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKLRELCPNVSISTD 300
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR-SREL 410
II FPGE+++DF +T++++++ +F Q+ ++ RP T AA M P+ + ++ SR L
Sbjct: 301 IIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATM---PNQIDEETASRRL 357
Query: 411 TSVFEAFTPYLG-----MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 465
+++ + L E + ++ E+ A G + G T V V + +LG
Sbjct: 358 STLQNRHSEILDEIVKKQENKTFKVLFEELRA-GNSIAGRTDNNFLVQVEGSEELLGQFK 416
Query: 466 LVKITSVGRWSVFGEVI 482
VKIT+ R ++GE++
Sbjct: 417 EVKITNAKRMVLYGEIV 433
>TIGR_CMR|NSE_0832 [details] [associations]
symbol:NSE_0832 "tRNA-i(6)A37 modification enzyme MiaB"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0016782 "transferase
activity, transferring sulfur-containing groups" evidence=ISS]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0006400 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:YP_506702.1
ProteinModelPortal:Q2GCU4 STRING:Q2GCU4 GeneID:3932248
KEGG:nse:NSE_0832 PATRIC:22681657 ProtClustDB:CLSK2528018
BioCyc:NSEN222891:GHFU-838-MONOMER Uniprot:Q2GCU4
Length = 471
Score = 414 (150.8 bits), Expect = 1.2e-38, P = 1.2e-38
Identities = 119/436 (27%), Positives = 212/436 (48%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP------SQSAMD 115
++KT+GC N DSE + +S G+ L++ +E+AD+ ++NTC ++ S+
Sbjct: 32 HIKTYGCQMNVYDSEMIEKIVSGLGFTLSERAEDADLIILNTCNIREKAAEKLYSELGQI 91
Query: 116 TLIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--GHE 170
L+ K K + +VVAGCV Q G ++ E V +V G Q I + E++ + + G
Sbjct: 92 RLLQKKKQERILIVVAGCVAQAEGEEIMRRAENVDVVVGPQSIHSLPELIAKVNRQSGKA 151
Query: 171 VRL----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+++ + + A + K R + L I GC C +C + RG S + E +
Sbjct: 152 IKMEFDPIEKFDYLAEETRKRRVPQSSAFLSIQEGCDKFCAFCVVPYTRGAEYSRSTEEV 211
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY-GR-DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
++ GVKE+ L ++ Y G D G N + L +++ L S + RI T
Sbjct: 212 YREALSLTTKGVKEITLLGQNVNGYHGTLDSG-NKVLNLGQLISRLGKIPS-LKRIRYTT 269
Query: 285 PPFILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+ H KE+ + + + F+H+PVQSGSD +L MNR+YT +D+ +++
Sbjct: 270 SHPVDMH-KELYDAHANESKLMPFVHLPVQSGSDKILKQMNRKYTTADYLKIINEFQNAR 328
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
+ ++D I GFPGE+D+DF QT+ LI++ + Q + ++ PRPGTP A ++
Sbjct: 329 SDIAFSSDFIVGFPGESDDDFQQTLALIEQVNYAQCYSFKYSPRPGTPGATYPQISEETK 388
Query: 404 KKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 461
R ++L + + M G+ + + D I G T+ Y+Q + N+L
Sbjct: 389 NTRLQKLQQLLKEKQLEFNKKMIGKTVTVLFDKKHPDKIS--GRTE-YMQQVFSDDSNLL 445
Query: 462 GTSALVKITSVGRWSV 477
+++ +++
Sbjct: 446 DKIVTMRVEDASTFTL 461
>UNIPROTKB|Q607P8 [details] [associations]
symbol:MCA1711 "Putative uncharacterized protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AE017282
GenomeReviews:AE017282_GR Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0009451 TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579
HOGENOM:HOG000224765 OMA:VITFGCR RefSeq:YP_114150.1
ProteinModelPortal:Q607P8 GeneID:3102185 KEGG:mca:MCA1711
PATRIC:22607260 ProtClustDB:CLSK2523614 Uniprot:Q607P8
Length = 436
Score = 412 (150.1 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 130/433 (30%), Positives = 207/433 (47%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I +++ GC N+++ E A + A G+ L + +AD+ ++N+C V + + +I +
Sbjct: 3 INLQSLGCRLNEAELESWAREFQAAGHRLVSETGDADLIVLNSCAVTAEAVRKSRQMIRR 62
Query: 121 CK--SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQID--RVVEVVEETLKGHEVRLLHR 176
+ S + LV++GC D GV +V V D R+VE+ L +
Sbjct: 63 TQRLSPRARLVLSGCYATLHGDEAAALGVDLV-VSNADKSRLVEIAARELALEAMPEFST 121
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ A R+ FV++ GC CT+C ARG S ++ +R + A+
Sbjct: 122 EPGEAALFALGRQRAFVKVQD---GCRYRCTFCIVTVARGEERSRLPAEVIREIRRLQAE 178
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
GV+EV L+ G YG D+G+ L L+ +I+ E LR+G P + ++
Sbjct: 179 GVQEVVLTGVHLGGYGSDLGLPLDALIRSILQETE---IPRLRLGSLEPWDLPPGFFDLF 235
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E +P LH+P+QSGSD VL M R +F + D VP + I TDII GF
Sbjct: 236 E---NPRFMPHLHLPLQSGSDTVLKRMARRCKSEEFARLADHARRQVPDINITTDIIVGF 292
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-F 414
PGET+ ++ +++ I+ F +H+ + R GT AA M VP+ + K+RSR L +
Sbjct: 293 PGETEREWEESLQFIETIGFGDIHVFTYSVREGTKAAAMGGHVPAEIKKERSRVLHELAL 352
Query: 415 EAFTPYLG-MEGR-VERIWITEIAADGIHLVGHTKGYVQVLV--PSTG--NMLGTSALVK 468
LG GR + +W E DG G+T Y++V + P TG N + LVK
Sbjct: 353 GQKRALLGRFVGREMPVLW--ENRRDGADR-GYTPNYLRVAIQTPETGLTNRITPVRLVK 409
Query: 469 ITSVGRWSVFGEV 481
+ + G + G V
Sbjct: 410 VDASGEFLWCGPV 422
>TIGR_CMR|CPS_3572 [details] [associations]
symbol:CPS_3572 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_270240.1 ProteinModelPortal:Q47Y80 STRING:Q47Y80
GeneID:3520404 KEGG:cps:CPS_3572 PATRIC:21470075
ProtClustDB:PRK14325 BioCyc:CPSY167879:GI48-3594-MONOMER
Uniprot:Q47Y80
Length = 480
Score = 411 (149.7 bits), Expect = 2.7e-38, P = 2.7e-38
Identities = 131/457 (28%), Positives = 227/457 (49%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +Y+KT+GC N+ DS+ MA L S G++L + +E+AD+ L+NTC+++ +Q +
Sbjct: 2 SKKLYIKTWGCQMNEYDSQKMAELLDSTHGFSLVEEAEQADVILLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAK--KP--LV-VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K+ K KP L+ V GCV +G K V ++ G Q + R+ E++ +
Sbjct: 62 QLGRWKNLKDKKPDLLIGVGGCVASQEGDSIRKRAPFVDMIFGPQTLHRLPEMLNQLQHS 121
Query: 169 H----EVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+V +K L PK + FV I+ GC CT+C + RG S +
Sbjct: 122 KSPIIDVSFPEIEKFDRLPEPKADGASAFVSIME---GCSKYCTFCVVPYTRGEEVSRPL 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
+ ++ + + GV+EV L ++ AY G ++ + + DG +R
Sbjct: 179 DDVLYEIAQLAEQGVREVNLLGQNVNAYRGETHDGSICRFADLVRLVATIDGIDRIRYTT 238
Query: 283 TNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P +E +I E P + + LH+PVQSG D +L+ M R +T ++++ + L +
Sbjct: 239 SHP---VEFTDDIIEAYTDVPELVNHLHLPVQSGCDRILTQMKRGHTALEYKSQIRKLKK 295
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP-RPGTPAARMKKVPS 400
+ P + +++D I GFPGETDEDF T++LIK F + S Y RPGTPAA + S
Sbjct: 296 VRPELSMSSDFIIGFPGETDEDFTATMDLIKAVDF-DLSFSFIYSARPGTPAADLPDDIS 354
Query: 401 AVVKKRSRELTS---VFEAFTPYLGMEGRVERIWITEIAADG-IHLVGHTKGYVQVLVPS 456
KK +L +A M +R+ + + + L G T+ V +
Sbjct: 355 DQTKKDRLKLLQEQITHQALRIARQMLNTEQRVLVEGPSRKNPMELRGKTENNRTVNFVA 414
Query: 457 TGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIA 493
+++G +KIT V S+ GE+++ ++ +IA
Sbjct: 415 PHSVIGQFVDIKITDVVANSLRGELVREEKEMGLRIA 451
>TIGR_CMR|ECH_0837 [details] [associations]
symbol:ECH_0837 "tRNA-i(6)A37 modification enzyme MiaB"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0016782 "transferase
activity, transferring sulfur-containing groups" evidence=ISS]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
PROSITE:PS50926 TIGRFAMs:TIGR00089 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
RefSeq:YP_507633.1 ProteinModelPortal:Q2GG00 STRING:Q2GG00
GeneID:3927997 KEGG:ech:ECH_0837 PATRIC:20577090
BioCyc:ECHA205920:GJNR-840-MONOMER Uniprot:Q2GG00
Length = 442
Score = 408 (148.7 bits), Expect = 6.2e-38, P = 6.2e-38
Identities = 103/361 (28%), Positives = 184/361 (50%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+K++GC N DS M + G+ + + EA+I ++NTC ++ + + + + K
Sbjct: 4 LYIKSYGCQMNVYDSLIMENIIKPLGFTVVNEPSEANIVILNTCHIREKASEKLYSELGK 63
Query: 121 CKSAKKP----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEET--LKGHEV 171
+ ++ +VVAGCV Q G + V IV G Q I + E++ + +K +
Sbjct: 64 MRKIQETKDLTIVVAGCVAQAEGEQIFARAPFVDIVVGPQSIHTLPELIIKARRMKKQVI 123
Query: 172 RLLHR--KKLPALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ K A+ + + +N+ V + + GC CT+C + RG S TVE++
Sbjct: 124 NIDFPIISKFDAIPVEEYTKNQEVSAFISVQEGCNKFCTFCVVPYTRGEEYSRTVEAIFN 183
Query: 229 RVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPI-LLNAIVAELPPDGSTMLRIGMTNPP 286
+ GVKE+ L ++ AY G G + L +A++P +R ++P
Sbjct: 184 EALVLSDSGVKEITLIGQNVNAYHGTYKGCEWDLGKLIQYLAKIP--NIERIRYTTSHPR 241
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + L E + F+H+P+QSGSD +L MNR++T ++ +++ L + P +
Sbjct: 242 DMHQSLYEAHR--SETKLMPFVHLPIQSGSDRILKKMNRKHTAEEYIDIINNLRKQRPDI 299
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
++D I GFPGET+EDF T+ L++E F Q + ++ PRPGTP+A ++P + +
Sbjct: 300 AFSSDFIVGFPGETEEDFEHTMKLVQEVNFSQAYSFKYSPRPGTPSAEYPNQIPEEIKSQ 359
Query: 406 R 406
R
Sbjct: 360 R 360
>TIGR_CMR|APH_0880 [details] [associations]
symbol:APH_0880 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 RefSeq:YP_505456.1
ProteinModelPortal:Q2GJJ5 STRING:Q2GJJ5 GeneID:3929963
KEGG:aph:APH_0880 PATRIC:20950460 KO:K06168 OMA:RDSEHII
ProtClustDB:CLSK747303 BioCyc:APHA212042:GHPM-893-MONOMER
Uniprot:Q2GJJ5
Length = 444
Score = 401 (146.2 bits), Expect = 4.1e-37, P = 4.1e-37
Identities = 112/382 (29%), Positives = 181/382 (47%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T +Y++++GC N D+ M L GYA E+ADI LINTC ++ + + +
Sbjct: 2 TRGLYIESYGCQMNVYDALMMEDLLRPVGYAAVSRPEDADIILINTCHIREKASEKLYST 61
Query: 118 IAKCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV----GVQQIDRVVEVVEETLKG 168
+ + + KK L+VAGCV Q G + V++V G+ + ++ V+ K
Sbjct: 62 LGRMRVIKKEECILIVAGCVAQAEGEAVFERAPYVNVVVGPQGLHTLPELIMKVKRDKKQ 121
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ K A+ + + + I GC CT+C + RG S VE+++
Sbjct: 122 INIEFPVVSKFDAISIDRKANGGVSAYVSIQEGCDKFCTFCVVPYTRGPEYSRDVEAILE 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V+ + G KE+ L ++ AY N L I DG +R ++P +
Sbjct: 182 EVKQLTDRGTKEIVLIGQNVNAYHGTYKGNEWDLGKLIQKVSLIDGVERIRYTTSHPRDM 241
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L E + + F+H+PVQSGSDA+L MNR++T ++ VV+ L + M +
Sbjct: 242 HPSLYEAHRDEKK--LAPFVHLPVQSGSDAILRKMNRKHTAEEYLRVVEQLKDSNKNMAL 299
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
++D I GFPGET++DF +T+ L++ F + ++ PRPGTP A +VP R
Sbjct: 300 SSDFIVGFPGETEKDFEETMKLVESVGFALSYSFKYSPRPGTPGAEYSNQVPEEEKSARL 359
Query: 408 RELTSVF--EAFTPYLGMEGRV 427
L + + MEGRV
Sbjct: 360 AALQGLLTKQQLQFNKSMEGRV 381
>TIGR_CMR|CHY_1164 [details] [associations]
symbol:CHY_1164 "MiaB-like tRNA modifying enzyme YliG,
TIGR01125" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016740 GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125
RefSeq:YP_360009.1 ProteinModelPortal:Q3ACX5 STRING:Q3ACX5
GeneID:3726572 KEGG:chy:CHY_1164 PATRIC:21275468 KO:K14441
BioCyc:CHYD246194:GJCN-1163-MONOMER Uniprot:Q3ACX5
Length = 438
Score = 401 (146.2 bits), Expect = 4.1e-37, P = 4.1e-37
Identities = 105/362 (29%), Positives = 191/362 (52%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAK 120
++ + GC+ NQ+DSE + G L + GY + N EE+D+ ++NTC + + + +++ ++
Sbjct: 4 FILSLGCTKNQADSEVIMGILESKGYVRSLNPEESDLLIVNTCGFIAAAIEESIEEIL-N 62
Query: 121 CKSAKKP---LVVAGCVPQ--GSRDLKELEGVSIVGV-QQIDRVVEVVEETLKGHEVRLL 174
KKP ++VAGC+ Q G K L V + ++I+ + +++ + + +++ L
Sbjct: 63 LVHLKKPGQKILVAGCLVQREGKELAKHLPEVDLFFTPREINNLDKLLADLGENNKLVLS 122
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
L P+ + N+ + I GC CTYC RG S ++ ++ ++ +
Sbjct: 123 EPGFLNLEKKPRAKSNEVYRYIKIADGCDNRCTYCTIPAIRGKYTSRPLDDILEEIKDTL 182
Query: 235 ADGVKEVWLSSEDTGAYGRDI-G-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
G+KE+ L ++DT AYG D+ G L LL I + G+ +R+ P I L
Sbjct: 183 KQGIKEIILVAQDTTAYGIDLYGEFKLVELLRKIGSI---KGNFWVRLMYLYPDKITPEL 239
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
I E+ +P V ++ VP+Q +L M R+ + + + ++ L + +P + I T
Sbjct: 240 --INEIKENPKVIKYVDVPLQHIHPEILKKMGRKGSSEEIISTLERLRKEIPDITIRTTF 297
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 411
I GFPGET+E FN ++ +K++KF ++ +Y GTPAA+MK ++P V ++R +L
Sbjct: 298 IVGFPGETEEQFNYLLDFVKKFKFNRLGAFPYYREKGTPAAKMKGQIPKKVKEQRYEKLM 357
Query: 412 SV 413
V
Sbjct: 358 EV 359
>TIGR_CMR|DET_1385 [details] [associations]
symbol:DET_1385 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 KO:K06168 OMA:RDSEHII RefSeq:YP_182095.1
ProteinModelPortal:Q3Z6Q4 STRING:Q3Z6Q4 GeneID:3229346
KEGG:det:DET1385 PATRIC:21609799 ProtClustDB:PRK14336
BioCyc:DETH243164:GJNF-1386-MONOMER Uniprot:Q3Z6Q4
Length = 418
Score = 369 (135.0 bits), Expect = 1.8e-33, P = 1.8e-33
Identities = 123/432 (28%), Positives = 201/432 (46%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-AMDTL-IA 119
Y+ T GC NQ++SE + +GY+L D +E+A++ L+N+C V+ +++ ++ L I
Sbjct: 5 YLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHIL 64
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ K P + G L G I V++ V+ + + G L ++
Sbjct: 65 RKLKDKNPRLKIALT--GC-----LVGQDIASVRKKFPFVDYIFQP--G---ALPDWGEI 112
Query: 180 P-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LP + + I GC CTYC + RG S ++ L ++ G
Sbjct: 113 PEGFILPL--KPPVSASITIMQGCDNFCTYCIVPYRRGREKSRSISELCCEAAELVRRGS 170
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+EV L ++ +YG D+ P L + + A G +R ++P I + L +
Sbjct: 171 REVVLLGQNVDSYGHDLPEK-PCLADLLYALSDIPGLLRIRFLTSHPKDISQKLIDAMAS 229
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
L C +S L +PVQ+G+D +L+AM R YT +R +V L +P + + TD+I GFP
Sbjct: 230 LHKVC-HS-LSLPVQAGADTILAAMRRGYTSEQYRELVGRLKTAMPDISLQTDLIVGFPS 287
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR--MKKVPSAVVKKRSRELTSVFEA 416
ET E F+Q+ L+ + + +H++ + PRP T AAR VP A KKR +L +
Sbjct: 288 ETAEQFDQSYKLMSDIGYDAIHVAAYSPRPQTAAARDMADDVPVAE-KKRRLKLIEDLQK 346
Query: 417 FTPYLGMEGRVERIWITEIAADGIHL---VGHTKGYVQVLVPSTGNMLGTSALVKITSVG 473
T V+ E+ +G G T G V + S + G VKI
Sbjct: 347 ETVSKANSALVDTF--AEVLVEGRQKNKWQGRTLGGKLVFLESDLPLEGCLINVKIFKAS 404
Query: 474 RWSVFGEVIKIL 485
WS+ +++KIL
Sbjct: 405 PWSLQAKLVKIL 416
>TIGR_CMR|DET_0962 [details] [associations]
symbol:DET_0962 "tRNA modification enzyme, MiaB family"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 Pfam:PF00919 Pfam:PF04055
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_181685.1 ProteinModelPortal:Q3Z7W4 STRING:Q3Z7W4
GeneID:3229703 KEGG:det:DET0962 PATRIC:21608973 OMA:ERINTKA
ProtClustDB:CLSK837155 BioCyc:DETH243164:GJNF-963-MONOMER
Uniprot:Q3Z7W4
Length = 413
Score = 367 (134.2 bits), Expect = 3.0e-33, P = 3.0e-33
Identities = 115/423 (27%), Positives = 201/423 (47%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I + T GC NQ+++E + + GY L + DI+++N+CTV T +A
Sbjct: 4 IALDTLGCKLNQAETEAFGREFARAGYRLVSPQDNWDIYILNSCTV---------THVAD 54
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL---EGVSIVGVQQIDRVVEVVEETLKGHEV-RLLHR 176
K+ + + P G L G + D +++ ++ E+ RL
Sbjct: 55 RKARYQIRIARRHNPAGFICLMGCYAQNGGDKLSCPDADLILDNCRKSGIAAEISRLFPP 114
Query: 177 KKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ L P+L R F++I GC C+YC R H V+ ++ + A
Sbjct: 115 EALAPSL-YENGRTRSFIKIQD---GCDNFCSYCIVPFVRRHKSCRRVDEIISEINLRQA 170
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA--ELPPDGSTMLRIGMTNPPFILEHLK 293
+G +E+ L+ + G Y GV+L L+ AI+A ++P LR+ P I L
Sbjct: 171 EGYQEIVLTGTEIGEYASG-GVDLAGLIEAILANTQIP-----RLRLSSLQPGEITPRLL 224
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+ E +P + H+ +QSGSD +L+ M R Y+L D+ ++ + VPG + TD+I
Sbjct: 225 ALWE---NPRLCRHFHMALQSGSDCILALMRRPYSLGDYNRALEAIRSQVPGAAVTTDLI 281
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 412
GFPGET+EDF ++ I++ F +VH + R GT A+ M+ K+ +V+KKR + +
Sbjct: 282 VGFPGETEEDFALSLKYIQQAGFARVHAFPYSERLGTLASGMEGKIDPSVIKKRLSLVMA 341
Query: 413 VFEAFTPYLGMEGR---VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 469
++ + + + E +W ++ DG+ G+T Y++V +G T + VK+
Sbjct: 342 AAKSVSMQYRRQSKGLGKEVLWENKMR-DGLWF-GYTSDYIRVYGRFSGQPTNTISQVKL 399
Query: 470 TSV 472
+
Sbjct: 400 VKI 402
>FB|FBgn0037816 [details] [associations]
symbol:CG6345 species:7227 "Drosophila melanogaster"
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=ISS] [GO:0016740
"transferase activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE014297 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 OMA:CGRTDGN EMBL:AY071094 RefSeq:NP_650002.1
UniGene:Dm.31302 ProteinModelPortal:Q9VGZ1 SMR:Q9VGZ1 STRING:Q9VGZ1
PRIDE:Q9VGZ1 EnsemblMetazoa:FBtr0082258 GeneID:41271
KEGG:dme:Dmel_CG6345 UCSC:CG6345-RA FlyBase:FBgn0037816
InParanoid:Q9VGZ1 OrthoDB:EOG4KPRS9 PhylomeDB:Q9VGZ1
GenomeRNAi:41271 NextBio:823020 Bgee:Q9VGZ1 GermOnline:CG6345
Uniprot:Q9VGZ1
Length = 583
Score = 240 (89.5 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 69/207 (33%), Positives = 108/207 (52%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQS 314
G LL + VA+ PD +RI T+P + E+ EV+R HP V LH+P QS
Sbjct: 330 GTPFAALLRS-VAQAVPD----MRIRFTSP-HPKDFSDEVLEVIRDHPNVCKQLHLPAQS 383
Query: 315 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374
G+ VL M R Y+ + +V + + +P + +++D ICGF GET+E+F TV+LI++
Sbjct: 384 GNTQVLERMRRGYSREAYLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQV 443
Query: 375 KFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRELTSVF-EAFTP-YLGMEGRVERI 430
++ ++ + R T A R K VP V +R + + VF E T + MEG+ + I
Sbjct: 444 QYNVAYLFAYSMREKTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQEQLI 503
Query: 431 WIT-EIAADGIHLVGHTKGYVQVLVPS 456
I + H G ++V+VPS
Sbjct: 504 LIEGKSKRSDAHWFGRNDANIKVIVPS 530
Score = 154 (59.3 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 49/211 (23%), Positives = 94/211 (44%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++ + +GC N +D+E + L GY EEAD+ ++ TC V+ ++ + +
Sbjct: 94 VHFEVYGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRLKH 153
Query: 121 CKSAKK-------PL--VVAGCVPQGSRD--LKELEGVSIVG----VQQIDRVVEVVEET 165
++ K PL + GC+ + ++ L++ + V ++ + + R++ +
Sbjct: 154 LRAMKNKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLL-AISRH 212
Query: 166 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTV 223
+ +L D+ VR N +++ GC CTYC RG S +
Sbjct: 213 YGNSAINVLLSLDETYADVMPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPL 272
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
S+V V+ + GVKEV L ++ +Y RD
Sbjct: 273 ASIVAEVKALAEQGVKEVTLLGQNVNSY-RD 302
>UNIPROTKB|Q60CM4 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243233 "Methylococcus capsulatus str. Bath"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_01865
InterPro:IPR005839 InterPro:IPR005840 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AE017282
GenomeReviews:AE017282_GR eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 HOGENOM:HOG000224766 GO:GO:0018339
TIGRFAMs:TIGR01125 KO:K14441 RefSeq:YP_112621.1
ProteinModelPortal:Q60CM4 GeneID:3104493 KEGG:mca:MCA0082
PATRIC:22603887 OMA:RVDTEHM Uniprot:Q60CM4
Length = 437
Score = 320 (117.7 bits), Expect = 1.4e-27, P = 1.4e-27
Identities = 102/392 (26%), Positives = 178/392 (45%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
+ GC DSE + QL A GYA+ ++AD+ ++NTC + + + +++ I + +
Sbjct: 10 SLGCPKALVDSERIITQLRAEGYAIVPTYQDADLVVVNTCGFIDAAVEESLEA-IGEAVA 68
Query: 124 AKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
++V GC+ + +++ + + G + V+ V E L LH P
Sbjct: 69 ENGKVIVTGCLGERPEEIQARHPAVLKVTGAHAYEEVMNAVHEHLPP-----LHD---PF 120
Query: 182 LDL--PK-VRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+DL P+ VR + L I+ GC C++C RG L S + ++ ++A G
Sbjct: 121 MDLVPPQGVRLTPRHYAYLKISEGCNHRCSFCIIPALRGDLVSRPIGEVMTEAERLVAAG 180
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPIL----LNAIVAELPP---DGSTMLRIGMTNPPFILE 290
VKE+ + S+DT AYG D+G L EL D +R+ P
Sbjct: 181 VKEILVVSQDTSAYGADLGYRTGFWGGRPLRTRFQELARALGDLGVWIRLHYVYP---YP 237
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
H+ E+ ++ + +L +P Q S VL AM R + + E+ P + + +
Sbjct: 238 HVDEVIPLMAEGRLLPYLDIPFQHASARVLKAMKRPAATENILAAIRRWREVCPELTLRS 297
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA-ARMKKVPSAVVKKRSRE 409
I GFPGET+++F + ++ ++E + +V ++ P G A A VP+ V +R
Sbjct: 298 TFIVGFPGETEDEFRELLDFLEEARLDRVGCFEYSPVKGAAANALPDPVPAEVKAERHAR 357
Query: 410 LTSVFEAFTPY-LGME-GRVERIWITEIAADG 439
L V E + L GR E + + E+ +G
Sbjct: 358 LMEVQERISAARLRTRIGRTETVLVDEVVEEG 389
>TIGR_CMR|CJE_1086 [details] [associations]
symbol:CJE_1086 "MiaB-like tRNA modifying enzyme"
species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
PIR:C81376 RefSeq:YP_179079.1 ProteinModelPortal:Q5HUF6
STRING:Q5HUF6 GeneID:3231595 KEGG:cjr:CJE1086 PATRIC:20043981
KO:K03423 OMA:GCRTNLF ProtClustDB:CLSK872324
BioCyc:CJEJ195099:GJC0-1112-MONOMER Uniprot:Q5HUF6
Length = 416
Score = 310 (114.2 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 100/402 (24%), Positives = 183/402 (45%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
E ++ KTFGC N D+E + + Y + ++ +A I ++N+CTV + + S + + +
Sbjct: 3 EKVFFKTFGCRTNIYDTELLKSYVK--DYEIINDENKAQIIVVNSCTVTNGADSGIKSYV 60
Query: 119 AKCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ +++ GC V +G L + + ++G D++ E + +E+ L+
Sbjct: 61 NTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAKTSFYELGNLN- 119
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
D+ N + I GC AC+YC RG S ++L+ +V + A+
Sbjct: 120 --FIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSRSVDEKALLKQVEILGAN 177
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G E+ L+ + G+YG G L LL + L G +R+G P + E
Sbjct: 178 GYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQIL---GIKRIRLGSLEPAQLDE---SFL 231
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQIATDIICG 355
E+L + LH+ +Q S+ +L M R +T +D + + +T+ G + TD I
Sbjct: 232 EILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLK-LFNTIAS--KGYALGTDFIVA 288
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV-KKRSRELTSVF 414
PGE++E + + + KE+ +H F PR T +A MK V + + K+R L S+
Sbjct: 289 HPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVINGTLAKERLNTLKSIV 348
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 456
E + +V + E DG G+ + + ++ + S
Sbjct: 349 EKNNYEFRKKNQVSLEVLVENQKDGF-FEGYDQFFNKIKIKS 389
>UNIPROTKB|F1NZV3 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400
"tRNA modification" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY EMBL:AADN02019062 IPI:IPI00570955
ProteinModelPortal:F1NZV3 Ensembl:ENSGALT00000010897 Uniprot:F1NZV3
Length = 522
Score = 217 (81.4 bits), Expect = 6.8e-27, Sum P(2) = 6.8e-27
Identities = 74/223 (33%), Positives = 116/223 (52%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 312
G+ LL+ V+ + P+ +RI T+P P F E L+ I E RH + LH+P
Sbjct: 272 GLRFAHLLDQ-VSRIDPE----MRIRFTSPHPKDFPDEVLQLIQE--RHN-ICKQLHLPA 323
Query: 313 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372
QSGS VL AM R YT + +V + +PG+ +++D I GF GET+ED QTV+L++
Sbjct: 324 QSGSTRVLEAMRRGYTREAYLELVQHVRNTIPGVSLSSDFIAGFCGETEEDHQQTVSLLR 383
Query: 373 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVE 428
E ++ + + R T A R++ VP+ V ++R EL +VF EA M G+ +
Sbjct: 384 EVRYNIGFLFAYSMRQKTRAYHRLQDDVPADVKQRRLEELITVFREEAARANEAMVGQSQ 443
Query: 429 RIWITEIAA-DGIHLVGHTKGYVQVLVPS--TGNMLGTSALVK 468
+ + + L G G ++V+ P T + G ALV+
Sbjct: 444 LVLVEGPSKRSASELCGRNDGNIKVIFPDADTEDAGGCKALVR 486
Score = 163 (62.4 bits), Expect = 6.8e-27, Sum P(2) = 6.8e-27
Identities = 56/215 (26%), Positives = 99/215 (46%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G +Y++T+GC N +D+E L GY T ++EAD+ L+ TC+V+ ++ +
Sbjct: 33 GLGKVYLETYGCQMNVNDTEIAWAILQKSGYTRTKEADEADVILLVTCSVRDKAEQTIWN 92
Query: 117 LIAKCKSAKK-------PLVVA--GCVPQGSRD--LKELEGVSIVG----VQQIDRVVEV 161
+ K+ K PL + GC+ + ++ L + V IV + + R++ +
Sbjct: 93 RLQHLKALKARRHQACLPLRIGILGCMAERLKEEILHREKLVDIVAGPDAYRDLPRLLAM 152
Query: 162 VEETLKGHEVRLLHRKKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
E + V LL + A LP + + I GC C+YC RG S
Sbjct: 153 AESGQQAANV-LLSLDETYADILPVQTSAGGKTAFVSIMRGCDNMCSYCIVPFTRGRERS 211
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 255
+ S++ V+ + GVKEV L ++ ++ RD+
Sbjct: 212 RPIASILQEVKMLSDQGVKEVTLLGQNVNSF-RDM 245
>UNIPROTKB|Q2GHP3 [details] [associations]
symbol:ECH_0217 "tRNA modification enzyme, MiaB family"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_507040.1 ProteinModelPortal:Q2GHP3
STRING:Q2GHP3 GeneID:3927804 KEGG:ech:ECH_0217 PATRIC:20575969
ProtClustDB:CLSK749189 BioCyc:ECHA205920:GJNR-217-MONOMER
Uniprot:Q2GHP3
Length = 412
Score = 307 (113.1 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 100/359 (27%), Positives = 168/359 (46%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
TFGC N +SE + L A D D+ ++++C V + ++ + + I K
Sbjct: 6 TFGCRLNFYESEVIKNNLKK---AQLD-----DVIVVHSCAVTNEAERQVRSRIRKLYRD 57
Query: 123 SAKKPLVVAGCVPQGSRDLK-ELEGV-SIVGVQQIDRVVEVVEETLKGHEVRL--LHRKK 178
+A ++VAGC Q + +L + GV ++G Q D++ E L ++ + + K
Sbjct: 58 NANVKIIVAGCAVQLNPELYVNMPGVIKVLGNQ--DKLK--YESYLAKDKIIVSKIENSK 113
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
D K K ++ I GC CT+C ARG+ S +E ++ +V+ + +G
Sbjct: 114 EVVQDSVKGFSGKSRALIEIQNGCNHECTFCVITKARGNNRSLYIEDIITKVKACVDNGY 173
Query: 239 KEVWLSSEDTGAYGRDI-GVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
EV + D +G DI G L ++ +++ +P LR+ + I + L I
Sbjct: 174 NEVVFTGVDISDFGLDIYGQRVLGTMIKRVLSAVPQ--LRRLRLSSIDVAEIEDDLINI- 230
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
++ P LH+ +QSG++ +L M R ++ + + + DII GF
Sbjct: 231 -IINEPRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCNKITSKRKEVVFGADIIVGF 289
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
P ET+E FN TV LI+E +H+ + R GTPAARM +V V K+R + L E
Sbjct: 290 PTETEEMFNDTVRLIEEANISYLHVFPYSKREGTPAARMPQVVQEVKKRRVKHLLEFAE 348
>TIGR_CMR|ECH_0217 [details] [associations]
symbol:ECH_0217 "tRNA modification enzyme, MiaB family"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_507040.1 ProteinModelPortal:Q2GHP3
STRING:Q2GHP3 GeneID:3927804 KEGG:ech:ECH_0217 PATRIC:20575969
ProtClustDB:CLSK749189 BioCyc:ECHA205920:GJNR-217-MONOMER
Uniprot:Q2GHP3
Length = 412
Score = 307 (113.1 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 100/359 (27%), Positives = 168/359 (46%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
TFGC N +SE + L A D D+ ++++C V + ++ + + I K
Sbjct: 6 TFGCRLNFYESEVIKNNLKK---AQLD-----DVIVVHSCAVTNEAERQVRSRIRKLYRD 57
Query: 123 SAKKPLVVAGCVPQGSRDLK-ELEGV-SIVGVQQIDRVVEVVEETLKGHEVRL--LHRKK 178
+A ++VAGC Q + +L + GV ++G Q D++ E L ++ + + K
Sbjct: 58 NANVKIIVAGCAVQLNPELYVNMPGVIKVLGNQ--DKLK--YESYLAKDKIIVSKIENSK 113
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
D K K ++ I GC CT+C ARG+ S +E ++ +V+ + +G
Sbjct: 114 EVVQDSVKGFSGKSRALIEIQNGCNHECTFCVITKARGNNRSLYIEDIITKVKACVDNGY 173
Query: 239 KEVWLSSEDTGAYGRDI-GVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
EV + D +G DI G L ++ +++ +P LR+ + I + L I
Sbjct: 174 NEVVFTGVDISDFGLDIYGQRVLGTMIKRVLSAVPQ--LRRLRLSSIDVAEIEDDLINI- 230
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
++ P LH+ +QSG++ +L M R ++ + + + DII GF
Sbjct: 231 -IINEPRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCNKITSKRKEVVFGADIIVGF 289
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
P ET+E FN TV LI+E +H+ + R GTPAARM +V V K+R + L E
Sbjct: 290 PTETEEMFNDTVRLIEEANISYLHVFPYSKREGTPAARMPQVVQEVKKRRVKHLLEFAE 348
>TIGR_CMR|CJE_1627 [details] [associations]
symbol:CJE_1627 "MiaB-like tRNA modifying enzyme YliG,
TIGR01125" species:195099 "Campylobacter jejuni RM1221" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:CPDITLR RefSeq:YP_179608.1
ProteinModelPortal:Q5HSX7 STRING:Q5HSX7 GeneID:3232255
KEGG:cjr:CJE1627 PATRIC:20045051 HOGENOM:HOG000224766
ProtClustDB:CLSK872428 BioCyc:CJEJ195099:GJC0-1657-MONOMER
GO:GO:0018339 TIGRFAMs:TIGR01125 Uniprot:Q5HSX7
Length = 439
Score = 315 (115.9 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 94/361 (26%), Positives = 175/361 (48%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA 119
+Y+ + GC+ N DSE M G+LSA Y L D +AD+ ++NTC + S + +++ ++
Sbjct: 4 LYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVIIVNTCGFIDSAKKESINAILD 61
Query: 120 KCKSAKKP--LVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVV-EETLKGHEVRL 173
+ KK LVV GC+ Q R+ +KEL V + GV +RV E++ ++T
Sbjct: 62 LHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERVDEMILKKTNLFSNSTY 121
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L + + + + F++I GC C++C +G L S + S++ ++ +
Sbjct: 122 LQSENSKRI-ITGSNSHAFIKIAE---GCNQKCSFCAIPSFKGKLKSREISSIIAELKDL 177
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHL 292
+A G K+ ++DT +Y D G ++ ++ E+ G RI P E L
Sbjct: 178 VARGYKDFSFIAQDTSSYLFDKGEKDGLI--RLIDEVEKIKGIRAARILYLYPTSASEAL 235
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
I ++ ++ +P+Q SD +L M R + + +++ L++ P + T
Sbjct: 236 --IKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLN-LMKSAPNSFLRTGF 292
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
I G PGE++ DF + +K++ F +V + + T A M++V V+ KR + +
Sbjct: 293 IVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDMEQVSFKVINKRLKIIEK 352
Query: 413 V 413
+
Sbjct: 353 I 353
>TIGR_CMR|NSE_0785 [details] [associations]
symbol:NSE_0785 "tRNA modification enzyme, MiaB family"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_506660.1 ProteinModelPortal:Q2GCY6 STRING:Q2GCY6
GeneID:3931918 KEGG:nse:NSE_0785 PATRIC:22681565 OMA:VITFGCR
ProtClustDB:CLSK2528053 BioCyc:NSEN222891:GHFU-796-MONOMER
Uniprot:Q2GCY6
Length = 429
Score = 311 (114.5 bits), Expect = 3.1e-26, P = 3.1e-26
Identities = 103/367 (28%), Positives = 166/367 (45%)
Query: 55 IPGTETIYMK---TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
+PG +M TFGC N +S+ + + + D+ E +INTC V + +
Sbjct: 6 LPGFSNKFMVKVITFGCRLNFYESDLIKNLVG-----IRDSRE---CIIINTCAVTNEAV 57
Query: 112 SAMDTLIAKCKSAK--KPLVVAGCVPQ-GSRDLKELEGV-SIVG-VQQIDRVVEVVEETL 166
+ I KC + K ++V GC PQ + GV ++G V+++ E+ +
Sbjct: 58 RQVKQKIRKCHKDEPSKKIIVVGCGPQLDPHAYSRMPGVFKVLGNVEKLKAENYASEQKI 117
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
++ + +P V + L I GC CT+C ARG S ++
Sbjct: 118 AVADITDASETAFSSTMMPVVSAVRKRAFLEIQNGCDHDCTFCAITLARGKNRSSDAMTI 177
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVN-LPILLNAIVAELPPDGSTMLRIGMTN 284
V VR ++A G+ EV L+ D YG+D+ G L LL I+ ++P LR+ +
Sbjct: 178 VSEVRKIVAFGINEVVLTGVDITDYGKDLFGKPALVYLLKKILNDVPE--LKRLRLSSVD 235
Query: 285 PPFILEHLKEI-AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+ + E+ A R + LH+ +QSG +L M R +T ++ +
Sbjct: 236 VSELSDDFIELFATEAR---LMPHLHLSIQSGDSIILKRMKRRHTPEQVVEFHSKILAVR 292
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P DII GFP E++E F+ + LIK P +H+ F P+ GT AA M +V V
Sbjct: 293 PETGFGADIIVGFPTESEEMFHNSYELIKRLAIPYLHVFPFSPKKGTKAALMPQVDGVVK 352
Query: 404 KKRSREL 410
K R+R+L
Sbjct: 353 KGRARKL 359
>DICTYBASE|DDB_G0287079 [details] [associations]
symbol:DDB_G0287079 "CDK5 regulatory
subunit-associated protein 1" species:44689 "Dictyostelium
discoideum" [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 dictyBase:DDB_G0287079 GenomeReviews:CM000153_GR
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 EMBL:AAFI02000096
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 RefSeq:XP_637416.1 ProteinModelPortal:Q54KV4
STRING:Q54KV4 EnsemblProtists:DDB0266584 GeneID:8625948
KEGG:ddi:DDB_G0287079 OMA:TSNLQEX ProtClustDB:CLSZ2430042
Uniprot:Q54KV4
Length = 607
Score = 207 (77.9 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 53/174 (30%), Positives = 94/174 (54%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQS 314
G+ L+ +V+++ P+ +RI T+P + ++ E++++ P + LH+P QS
Sbjct: 357 GITFTKLME-LVSKVDPE----IRIRFTSP-HPKDFPDDLLELIKNQPNICKQLHIPAQS 410
Query: 315 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374
GS VL +M R YT + ++DT+ ++PG I++D I GF GE+D+D N+T++L++
Sbjct: 411 GSSKVLESMRRGYTRESYIELIDTIKRVLPGCAISSDFISGFCGESDQDHNETISLMEYV 470
Query: 375 KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVE 428
+ + + R T A R K K SR LT V + F L + ++E
Sbjct: 471 GYENAFMFMYSLREKTHAHRQLKDDVPTTLKNSR-LTQVVDTFYKRLKEKNQLE 523
Score = 170 (64.9 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 59/244 (24%), Positives = 114/244 (46%)
Query: 25 NAVGVNPKYNKNKPRLHDNH-LSKTGSLSPKIPGT-ETIYMKTFGCSHNQSDSEYMAGQL 82
N + N + NK+K + + L S P G ++++T+GC N SD E + +
Sbjct: 72 NEINENNE-NKSKIETEEEYELPPYLSSLPNDKGNGRKVWIETYGCQMNVSDEEVICSIM 130
Query: 83 SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK----PLVVAGCVPQGS 138
+ GY ++++ ADI +NTC+++ +++ + + + ++ ++ P ++ G + +
Sbjct: 131 KSSGYTISNDFNTADIVFLNTCSIRENAEAKIWLRLTELRAIRRKQGRPNLIVGVLGCMA 190
Query: 139 RDLKE--LEG---VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA----LDLPKVRR 189
LKE LE V IV R + + TL+ E + L A D+ VR+
Sbjct: 191 ERLKEKLLESDMKVDIVVGPDAYRSLPSLLATLEDGEQQTAINVILSADETYADIKPVRK 250
Query: 190 --NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED 247
N+ + I GC C+YC RG S ++S++ V+ + G KE+ L ++
Sbjct: 251 SDNQVSAYVSIMRGCNNMCSYCIVPFTRGRERSRPIDSILREVKDLSDQGFKEITLLGQN 310
Query: 248 TGAY 251
++
Sbjct: 311 VNSF 314
>ZFIN|ZDB-GENE-070424-90 [details] [associations]
symbol:zgc:162738 "zgc:162738" species:7955 "Danio
rerio" [GO:0043412 "macromolecule modification" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400
"tRNA modification" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729
ZFIN:ZDB-GENE-070424-90 GO:GO:0005737 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:CR385028 EMBL:CT573268 IPI:IPI00877502
ProteinModelPortal:F1QMW8 Ensembl:ENSDART00000104111 Bgee:F1QMW8
Uniprot:F1QMW8
Length = 577
Score = 217 (81.4 bits), Expect = 4.9e-25, Sum P(2) = 4.9e-25
Identities = 56/178 (31%), Positives = 93/178 (52%)
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P +L+ ++E + + +H LH+P QSGS +L AM R YT + +V+ + +++P
Sbjct: 358 PDEVLQLIQERSNICKH------LHLPAQSGSSRILHAMRRGYTREAYLELVENIRKIIP 411
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMK-KVPSAV 402
G+ +++D I GF ET+ED QT++L+KE + + R T A R++ VP+ V
Sbjct: 412 GVSLSSDFIAGFCSETEEDHQQTISLLKEVGYNIGFFFTYSMRKKTHAYHRLEDNVPAPV 471
Query: 403 VKKRSRELTSVFEAFTPYLGME--GRVERIWIT-EIAADGIHLVGHTKGYVQVLVPST 457
K+R EL SVF + M G + + + + L G G V+V+ P T
Sbjct: 472 KKRRLEELISVFREKATKVNMTLIGNTQLVLVEGKSKRSSEELCGRNDGNVKVIFPKT 529
Score = 147 (56.8 bits), Expect = 4.9e-25, Sum P(2) = 4.9e-25
Identities = 51/211 (24%), Positives = 99/211 (46%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +T+GC N +D+E L GY+ T ++AD+ L+ TC+++ ++ + +
Sbjct: 92 VYFETYGCQMNTNDTEIAWSILQKAGYSRTLELQKADVVLLVTCSIREKAEQTIWNRLKH 151
Query: 121 CKSAKKPLV---------VAGCVPQGSR-DLKELEG-VSIVG----VQQIDRVVEVVEET 165
++KK + V GC+ + + +L + E V ++ + + R++ +
Sbjct: 152 LTASKKRIQKHKRSLTIGVLGCMAERLKSELLDQEKLVDVLAGPDAYRDLPRLLSLAHGG 211
Query: 166 LKGHEVRLLHRKKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ V LL ++ A +P + + + I GC C+YC RG S +
Sbjct: 212 QRASNV-LLSLEETYADVIPVHQTLEGHSAFVSIMRGCDNMCSYCIVPFTRGRERSRPMS 270
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 255
S+V VR + GVKE+ L ++ +Y RD+
Sbjct: 271 SIVEEVRMLSDQGVKEITLLGQNVNSY-RDL 300
Score = 65 (27.9 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 32/111 (28%), Positives = 44/111 (39%)
Query: 398 VPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWIT-EIAADGIHLVGHTKGYVQVLV 454
VP+ V K+R EL SVF + M G + + + + L G G V+V+
Sbjct: 467 VPAPVKKRRLEELISVFREKATKVNMTLIGNTQLVLVEGKSKRSSEELCGRNDGNVKVIF 526
Query: 455 PSTG--------NML----GTSALVKITSVGRWSVFGEVIKILNQVDDKIA 493
P T M G LVKITS S+ G + + D K A
Sbjct: 527 PKTNLPVQPEKTQMACITPGDYVLVKITSANSQSLRGHALNHSSLNDRKTA 577
>UNIPROTKB|F1S500 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045736 "negative regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654 EMBL:CU074412
RefSeq:XP_001928891.1 UniGene:Ssc.4299 ProteinModelPortal:F1S500
Ensembl:ENSSSCT00000007949 GeneID:100153041 KEGG:ssc:100153041
Uniprot:F1S500
Length = 589
Score = 196 (74.1 bits), Expect = 9.8e-25, Sum P(2) = 9.8e-25
Identities = 65/210 (30%), Positives = 107/210 (50%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLR--HPC--VYSFLHV 310
G+ LL+ V+++ P+ +RI T+P H K+ EVL+ H + +H+
Sbjct: 339 GLRFAHLLDQ-VSQIDPE----MRIRFTSP-----HPKDFPDEVLQLIHDRDNICKQIHL 388
Query: 311 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 370
P QSGS VL AM R Y+ + +V + E +PG+ +++D I GF GET+ED QTV+L
Sbjct: 389 PAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSL 448
Query: 371 IKEYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGR 426
++E ++ + + R T A R+K +P V +R EL +VF EA G
Sbjct: 449 LQEVQYNMGFLFAYSMRQKTRAYHRLKDDIPEEVKLRRLEELITVFREEATKANKTFVGC 508
Query: 427 VERIWITEIAA-DGIHLVGHTKGYVQVLVP 455
++ + + + L G G ++V+ P
Sbjct: 509 IQLVLVEGFSKRSSTDLCGRNDGNLKVIFP 538
Score = 167 (63.8 bits), Expect = 9.8e-25, Sum P(2) = 9.8e-25
Identities = 56/210 (26%), Positives = 99/210 (47%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC N +D+E L GY T N +EAD+ L+ TC+++ ++ + + +
Sbjct: 104 VYLETYGCQMNVNDTEIAWSILQKNGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQ 163
Query: 121 CKSAKK-------PLVVA--GCVPQGSRD--LKELEGVSIVG----VQQIDRVVEVVEET 165
K+ K PL + GC+ + ++ L + V I+ + + R++ V E
Sbjct: 164 LKALKSKRLRSQVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESG 223
Query: 166 LKGHEVRLLHRKKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ V LL + A LP + + + I GC C+YC RG S V
Sbjct: 224 QQAANV-LLSLDETYADVLPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVA 282
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
S++ VR + G+KEV L ++ ++ RD
Sbjct: 283 SILEEVRKLSEQGLKEVTLLGQNVNSF-RD 311
Score = 51 (23.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 28/106 (26%), Positives = 45/106 (42%)
Query: 394 RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGY 449
R+K +P V +R EL +VF EA G ++ + + + L G G
Sbjct: 473 RLKDDIPEEVKLRRLEELITVFREEATKANKTFVGCIQLVLVEGFSKRSSTDLCGRNDGN 532
Query: 450 VQVLVPS------TGNML------GTSALVKITSVGRWSVFGEVIK 483
++V+ P T + L G LVKITS ++ G V++
Sbjct: 533 LKVIFPDVELEDVTNSGLKVRAQPGDYVLVKITSASSQTLKGHVLR 578
>UNIPROTKB|E2QYD7 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:AAEX03013894 ProteinModelPortal:E2QYD7
Ensembl:ENSCAFT00000039522 Uniprot:E2QYD7
Length = 583
Score = 198 (74.8 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 65/210 (30%), Positives = 105/210 (50%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLR--HPC--VYSFLHV 310
G+ LL+ V+ + P+ +RI T+P H K+ EVL+ H + +H+
Sbjct: 333 GLRFTYLLDQ-VSRVDPE----MRIRFTSP-----HPKDFPDEVLQLIHERDNICKQIHL 382
Query: 311 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 370
P QSGS VL AM R Y+ + ++ + E +PG+ +++D I GF GET+ED QTV+L
Sbjct: 383 PAQSGSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSL 442
Query: 371 IKEYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGR 426
++E ++ + + R T A R+K VP V +R EL +VF EA + G
Sbjct: 443 LREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGS 502
Query: 427 VERIWIT-EIAADGIHLVGHTKGYVQVLVP 455
+ + + L G G ++V+ P
Sbjct: 503 TQLVLVEGHSKRSATDLCGRNDGNLKVIFP 532
Score = 163 (62.4 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 53/207 (25%), Positives = 97/207 (46%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC N +D+E L GY T N +EAD+ L+ TC+++ ++ + + +
Sbjct: 98 VYLETYGCQMNVNDTEIAWSVLQKSGYLRTRNLQEADVILLVTCSIREKAEQTIWNRLQQ 157
Query: 121 CKSAKK-------PLVVA--GCVPQGSRD--LKELEGVSIVG----VQQIDRVVEVVEET 165
K+ K PL + GC+ + ++ L + V I+ + + R++ V E
Sbjct: 158 LKALKTKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESG 217
Query: 166 LKGHEVRLLHRKKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ V LL + A +P + + + I GC C+YC RG S V
Sbjct: 218 QQAANV-LLSLDETYADVMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVA 276
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAY 251
S++ VR + G+KEV L ++ ++
Sbjct: 277 SILEEVRKLSEQGLKEVTLLGQNVNSF 303
Score = 48 (22.0 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 28/105 (26%), Positives = 41/105 (39%)
Query: 394 RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGY 449
R+K VP V +R EL +VF EA + G + + + L G G
Sbjct: 467 RLKDDVPEEVKLRRLEELITVFREEATKANMASVGSTQLVLVEGHSKRSATDLCGRNDGN 526
Query: 450 VQVLVPST-----GN-------MLGTSALVKITSVGRWSVFGEVI 482
++V+ P N G LVKITS ++ G V+
Sbjct: 527 LKVIFPDVEMEDINNSDVRVRAQPGDYVLVKITSTSSQTLKGHVL 571
>MGI|MGI:1914221 [details] [associations]
symbol:Cdk5rap1 "CDK5 regulatory subunit associated protein
1" species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0043412 "macromolecule
modification" evidence=IEA] [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 MGI:MGI:1914221
GO:GO:0005737 GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GO:GO:0045736 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654
HOVERGEN:HBG050975 EMBL:AK010097 EMBL:AK088517 EMBL:BC025132
IPI:IPI00109397 RefSeq:NP_080152.1 UniGene:Mm.289427
ProteinModelPortal:Q8BTW8 SMR:Q8BTW8 STRING:Q8BTW8
PhosphoSite:Q8BTW8 PaxDb:Q8BTW8 PRIDE:Q8BTW8
Ensembl:ENSMUST00000028990 Ensembl:ENSMUST00000109731 GeneID:66971
KEGG:mmu:66971 InParanoid:Q8BTW8 OrthoDB:EOG4SQWWK NextBio:323171
Bgee:Q8BTW8 CleanEx:MM_CDK5RAP1 Genevestigator:Q8BTW8
GermOnline:ENSMUSG00000027487 Uniprot:Q8BTW8
Length = 588
Score = 195 (73.7 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 59/164 (35%), Positives = 91/164 (55%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 312
G+ LL+ V+ + P+ +RI T+P P F E L+ I E RH + +H+P
Sbjct: 336 GLRFSHLLDQ-VSRIDPE----MRIRFTSPHPKDFPDEVLQLIRE--RHN-ICKQIHLPA 387
Query: 313 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372
QSGS VL AM R Y+ + +V + E +PG+ +++D I GF GET++D QTV+L++
Sbjct: 388 QSGSSRVLDAMRRGYSREAYVALVHHVRETIPGVSLSSDFITGFCGETEDDHRQTVSLLR 447
Query: 373 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 414
E ++ + + R T A R+K VP V +R EL +VF
Sbjct: 448 EVQYNTGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVF 491
Score = 166 (63.5 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 54/211 (25%), Positives = 101/211 (47%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC N +D+E L GY T N +EAD+ L+ TC+++ ++ + + +
Sbjct: 101 VYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQ 160
Query: 121 CK--SAKKP-------LVVAGCVPQGSRD--LKELEGVSIVG----VQQIDRVVEVVEET 165
K K+P + + GC+ + + L + V ++ + + R++ VVE
Sbjct: 161 LKVLKTKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVESG 220
Query: 166 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTV 223
+ V LL + A D+ V+ + +++ GC C+YC RG S V
Sbjct: 221 QQAANV-LLSLDETYA-DIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPV 278
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
S++ VR + G+KEV L ++ ++ RD
Sbjct: 279 ASILDEVRKLSEQGLKEVTLLGQNVNSF-RD 308
>RGD|708387 [details] [associations]
symbol:Cdk5rap1 "CDK5 regulatory subunit associated protein 1"
species:10116 "Rattus norvegicus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] [GO:0007420 "brain development"
evidence=TAS] [GO:0008283 "cell proliferation" evidence=NAS]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0019887
"protein kinase regulator activity" evidence=TAS] [GO:0032403
"protein complex binding" evidence=IDA] [GO:0045664 "regulation of
neuron differentiation" evidence=TAS] [GO:0045736 "negative
regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=ISO;ISS] [GO:0045859 "regulation of protein
kinase activity" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 RGD:708387 GO:GO:0005737
GO:GO:0045664 GO:GO:0007420 GO:GO:0032403 GO:GO:0046872
GO:GO:0008283 GO:GO:0016740 GO:GO:0051539 GO:GO:0006400
GO:GO:0019887 GO:GO:0045736 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654
HOVERGEN:HBG050975 OrthoDB:EOG4SQWWK EMBL:AF177477 EMBL:BC066666
IPI:IPI00203631 RefSeq:NP_663773.1 UniGene:Rn.203271
ProteinModelPortal:Q9JLH6 IntAct:Q9JLH6 STRING:Q9JLH6
Ensembl:ENSRNOT00000021418 GeneID:252827 KEGG:rno:252827
InParanoid:Q9JLH6 NextBio:623881 Genevestigator:Q9JLH6
Uniprot:Q9JLH6
Length = 586
Score = 191 (72.3 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 59/164 (35%), Positives = 91/164 (55%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 312
G+ LL+ V+ + P+ +RI T+P P F E L+ I E RH + +H+P
Sbjct: 334 GLRFSHLLDQ-VSRIDPE----MRIRFTSPHPKDFPDEVLQLIRE--RHN-ICKQIHLPA 385
Query: 313 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372
QSGS VL AM R Y+ + +V + E +PG+ +++D I GF GET++D QTV+L++
Sbjct: 386 QSGSSRVLEAMRRGYSREAYVALVHHIREAIPGVGLSSDFITGFCGETEDDHLQTVSLLR 445
Query: 373 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 414
E ++ + + R T A R+K VP V +R EL +VF
Sbjct: 446 EVQYNTGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVF 489
Score = 170 (64.9 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 55/211 (26%), Positives = 102/211 (48%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC N +D+E L GY T N +EAD+ L+ TC+++ ++ + + +
Sbjct: 99 VYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQ 158
Query: 121 CK--SAKKP-------LVVAGCVPQGSRD--LKELEGVSIVG----VQQIDRVVEVVEET 165
K AK+P + + GC+ + + L + V ++ + + R++ VVE
Sbjct: 159 LKVLKAKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVESG 218
Query: 166 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTV 223
+ V LL + A D+ V+ + +++ GC C+YC RG S V
Sbjct: 219 QQAANV-LLSLDETYA-DIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPV 276
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
S++ VR + G+KEV L ++ ++ RD
Sbjct: 277 ASILDEVRKLSEQGLKEVTLLGQNVNSF-RD 306
>UNIPROTKB|Q9KNW0 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441 ProtClustDB:PRK14862
PIR:H82054 RefSeq:NP_232248.1 ProteinModelPortal:Q9KNW0
PRIDE:Q9KNW0 DNASU:2615637 GeneID:2615637 KEGG:vch:VC2620
PATRIC:20084264 Uniprot:Q9KNW0
Length = 470
Score = 302 (111.4 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 105/397 (26%), Positives = 177/397 (44%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
+ GC N DSE + QL GY + ++ ++D+ ++NTC + S Q ++DT+ K
Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEALKE 98
Query: 124 AKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
K ++V GC+ +++++ + I G V+E V + + + H
Sbjct: 99 NGK-VIVTGCLGAREDEIRQVHPNVLGITGPHAYQNVLEHVHQ----YAPKPAHNPFTSL 153
Query: 182 LDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+ V+ K L I+ GC CT+C RG L S V ++G + GVKE
Sbjct: 154 VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEIIGEAERLKNAGVKE 213
Query: 241 VWLSSEDTGAYGRDIGVNL------PILLN--AIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ + S+DT AYG D +L P+ N A+ EL G +R+ P H+
Sbjct: 214 LLVISQDTSAYGVDTKHSLGFANGSPVRHNIKALSEELGKMG-IWVRLHYVYP---YPHV 269
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
EI ++ V +L +P Q S VL M R + E+ P + I +
Sbjct: 270 DEIIPLMAEGKVLPYLDIPFQHASPRVLKMMKRPGQAERTLERIKKWREICPELVIRSTF 329
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 411
I GFPGET+EDF ++ +KE + +V ++ P G A ++ ++P V + R
Sbjct: 330 IVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIEDQIPEDVKQDRFERFM 389
Query: 412 SVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHT 446
V + + + G ++ I E+ +G +G T
Sbjct: 390 LVQQEISAAKLQKRIGSTMQVLIDEVDEEGA--IGRT 424
>TIGR_CMR|VC_2620 [details] [associations]
symbol:VC_2620 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01865
InterPro:IPR005839 InterPro:IPR005840 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441 ProtClustDB:PRK14862
PIR:H82054 RefSeq:NP_232248.1 ProteinModelPortal:Q9KNW0
PRIDE:Q9KNW0 DNASU:2615637 GeneID:2615637 KEGG:vch:VC2620
PATRIC:20084264 Uniprot:Q9KNW0
Length = 470
Score = 302 (111.4 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 105/397 (26%), Positives = 177/397 (44%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
+ GC N DSE + QL GY + ++ ++D+ ++NTC + S Q ++DT+ K
Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEALKE 98
Query: 124 AKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
K ++V GC+ +++++ + I G V+E V + + + H
Sbjct: 99 NGK-VIVTGCLGAREDEIRQVHPNVLGITGPHAYQNVLEHVHQ----YAPKPAHNPFTSL 153
Query: 182 LDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+ V+ K L I+ GC CT+C RG L S V ++G + GVKE
Sbjct: 154 VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEIIGEAERLKNAGVKE 213
Query: 241 VWLSSEDTGAYGRDIGVNL------PILLN--AIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ + S+DT AYG D +L P+ N A+ EL G +R+ P H+
Sbjct: 214 LLVISQDTSAYGVDTKHSLGFANGSPVRHNIKALSEELGKMG-IWVRLHYVYP---YPHV 269
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
EI ++ V +L +P Q S VL M R + E+ P + I +
Sbjct: 270 DEIIPLMAEGKVLPYLDIPFQHASPRVLKMMKRPGQAERTLERIKKWREICPELVIRSTF 329
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 411
I GFPGET+EDF ++ +KE + +V ++ P G A ++ ++P V + R
Sbjct: 330 IVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIEDQIPEDVKQDRFERFM 389
Query: 412 SVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHT 446
V + + + G ++ I E+ +G +G T
Sbjct: 390 LVQQEISAAKLQKRIGSTMQVLIDEVDEEGA--IGRT 424
>WB|WBGene00017776 [details] [associations]
symbol:F25B5.5 species:6239 "Caenorhabditis elegans"
[GO:0016740 "transferase activity" evidence=IEA] [GO:0043412
"macromolecule modification" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0005575 "cellular_component" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 EMBL:FO081045 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 HOGENOM:HOG000224767 PIR:T16145 RefSeq:NP_498290.1
ProteinModelPortal:Q09316 SMR:Q09316 STRING:Q09316 PaxDb:Q09316
EnsemblMetazoa:F25B5.5.1 EnsemblMetazoa:F25B5.5.2 GeneID:175841
KEGG:cel:CELE_F25B5.5 UCSC:F25B5.5 CTD:175841 WormBase:F25B5.5
InParanoid:Q09316 OMA:GIDRIRY NextBio:889896 Uniprot:Q09316
Length = 547
Score = 186 (70.5 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 61/217 (28%), Positives = 103/217 (47%)
Query: 51 LSPK-IPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS 108
L+P+ + G T+ T+GC N SD E + ++ +G+ +D E ADI L+ TC+++
Sbjct: 69 LNPEDLQGNGRTVCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRD 128
Query: 109 PSQSAM-DTL-IAKCKSAKKPLVVA--GCVPQGSR-DLKELEG-VSIVG----VQQIDRV 158
++ + + L + + S K +V GC+ + R DL E V+IV + + R+
Sbjct: 129 GAEKKVWNQLKLIRSNSVNKGQIVGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRL 188
Query: 159 VEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
V V G V+L + + +V + I GC CTYC RG
Sbjct: 189 VAVAAGGSNGINVQLSLDETYADVQPIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRE 248
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 255
S +ES+V V+ + G K+V L ++ +Y RD+
Sbjct: 249 RSRPIESIVEEVQRLRDQGYKQVTLLGQNVNSY-RDM 284
Score = 170 (64.9 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 52/164 (31%), Positives = 83/164 (50%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 312
G+ LL VA+ PD +R T+P P F ++ ++ IA P + LH+P
Sbjct: 314 GLTFTTLLEK-VADAAPD----IRFRFTSPHPKDFPMQLIELIAS---RPNLCKQLHLPA 365
Query: 313 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372
QSG D L M R YT + +VD + ++P + + +D I GF GET++ T++LI+
Sbjct: 366 QSGDDETLERMERGYTRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIR 425
Query: 373 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 414
++ + + R T A R+ VP V +R +LT+VF
Sbjct: 426 AVRYSFCFVFPYSMRGKTRAHHRLTDDVPEDVKARRHLDLTTVF 469
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 42 DNHLSKTGSLSPKIPGTETIYMKTFG 67
D ++ + S ++PG +T+Y G
Sbjct: 288 DFSMAPSTSQEDRVPGFKTVYKPKSG 313
>UNIPROTKB|Q09316 [details] [associations]
symbol:F25B5.5 "CDK5RAP1-like protein" species:6239
"Caenorhabditis elegans" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=ISS] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 EMBL:FO081045 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 HOGENOM:HOG000224767 PIR:T16145 RefSeq:NP_498290.1
ProteinModelPortal:Q09316 SMR:Q09316 STRING:Q09316 PaxDb:Q09316
EnsemblMetazoa:F25B5.5.1 EnsemblMetazoa:F25B5.5.2 GeneID:175841
KEGG:cel:CELE_F25B5.5 UCSC:F25B5.5 CTD:175841 WormBase:F25B5.5
InParanoid:Q09316 OMA:GIDRIRY NextBio:889896 Uniprot:Q09316
Length = 547
Score = 186 (70.5 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 61/217 (28%), Positives = 103/217 (47%)
Query: 51 LSPK-IPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS 108
L+P+ + G T+ T+GC N SD E + ++ +G+ +D E ADI L+ TC+++
Sbjct: 69 LNPEDLQGNGRTVCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRD 128
Query: 109 PSQSAM-DTL-IAKCKSAKKPLVVA--GCVPQGSR-DLKELEG-VSIVG----VQQIDRV 158
++ + + L + + S K +V GC+ + R DL E V+IV + + R+
Sbjct: 129 GAEKKVWNQLKLIRSNSVNKGQIVGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRL 188
Query: 159 VEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
V V G V+L + + +V + I GC CTYC RG
Sbjct: 189 VAVAAGGSNGINVQLSLDETYADVQPIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRE 248
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 255
S +ES+V V+ + G K+V L ++ +Y RD+
Sbjct: 249 RSRPIESIVEEVQRLRDQGYKQVTLLGQNVNSY-RDM 284
Score = 170 (64.9 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 52/164 (31%), Positives = 83/164 (50%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 312
G+ LL VA+ PD +R T+P P F ++ ++ IA P + LH+P
Sbjct: 314 GLTFTTLLEK-VADAAPD----IRFRFTSPHPKDFPMQLIELIAS---RPNLCKQLHLPA 365
Query: 313 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372
QSG D L M R YT + +VD + ++P + + +D I GF GET++ T++LI+
Sbjct: 366 QSGDDETLERMERGYTRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIR 425
Query: 373 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 414
++ + + R T A R+ VP V +R +LT+VF
Sbjct: 426 AVRYSFCFVFPYSMRGKTRAHHRLTDDVPEDVKARRHLDLTTVF 469
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 42 DNHLSKTGSLSPKIPGTETIYMKTFG 67
D ++ + S ++PG +T+Y G
Sbjct: 288 DFSMAPSTSQEDRVPGFKTVYKPKSG 313
>UNIPROTKB|P0AEI4 [details] [associations]
symbol:rimO "ribosomal protein S12 D88
methylthiotransferase" species:83333 "Escherichia coli K-12"
[GO:0009451 "RNA modification" evidence=IEA] [GO:0005575
"cellular_component" evidence=IEA] [GO:0035599 "aspartic acid
methylthiotransferase activity" evidence=IDA;IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0018339
"peptidyl-L-beta-methylthioaspartic acid biosynthetic process from
peptidyl-aspartic acid" evidence=IEA;IMP;IDA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA;IDA] [GO:0046872 "metal ion
binding" evidence=IEA] HAMAP:MF_01865 InterPro:IPR005839
InterPro:IPR005840 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 TIGRFAMs:TIGR01125 KO:K14441 PIR:C64821
RefSeq:NP_415356.1 RefSeq:YP_489108.1 ProteinModelPortal:P0AEI4
SMR:P0AEI4 DIP:DIP-48218N IntAct:P0AEI4 PRIDE:P0AEI4
EnsemblBacteria:EBESCT00000004134 EnsemblBacteria:EBESCT00000017680
GeneID:12932851 GeneID:945465 KEGG:ecj:Y75_p0808 KEGG:eco:b0835
PATRIC:32116873 EchoBASE:EB3251 EcoGene:EG13478
ProtClustDB:PRK14862 BioCyc:EcoCyc:G6435-MONOMER
BioCyc:ECOL316407:JW0819-MONOMER BioCyc:MetaCyc:G6435-MONOMER
Genevestigator:P0AEI4 GO:GO:0035599 Uniprot:P0AEI4
Length = 441
Score = 293 (108.2 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 97/402 (24%), Positives = 180/402 (44%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQS 112
K+ I + GC N DSE + +L GY + + ++AD+ ++NTC + S Q
Sbjct: 3 KVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQE 62
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHE 170
+++ I + + ++V GC+ ++E+ + I G ++V+E V H
Sbjct: 63 SLEA-IGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVH-----HY 116
Query: 171 V-RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + H L + V+ + L I+ GC CT+C RG L S + ++
Sbjct: 117 VPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLS 176
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELPPDGSTMLRI 280
+ ++ GVKE+ + S+DT AYG D+ G + + ++ +L G R+
Sbjct: 177 EAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLG-IWTRL 235
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
P H+ ++ ++ + +L +P+Q S +L M R ++ +
Sbjct: 236 HYVYP---YPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWR 292
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA-ARMKKVP 399
E+ P + + + I GFPGET+EDF ++ +KE + +V ++ P G A A +VP
Sbjct: 293 EICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVP 352
Query: 400 SAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADG 439
V ++R + + + E GR + I E+ +G
Sbjct: 353 EEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEG 394
>UNIPROTKB|Q08DN3 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit associated protein
1" species:9913 "Bos taurus" [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0016740 GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
eggNOG:COG0621 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654 HOVERGEN:HBG050975
OrthoDB:EOG4SQWWK EMBL:DAAA02036431 EMBL:BC123652 IPI:IPI00694092
RefSeq:NP_001069114.1 UniGene:Bt.3262 STRING:Q08DN3
Ensembl:ENSBTAT00000024670 GeneID:514086 KEGG:bta:514086
InParanoid:Q08DN3 NextBio:20871170 Uniprot:Q08DN3
Length = 589
Score = 188 (71.2 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 52/162 (32%), Positives = 89/162 (54%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQS 314
G+ LL+ V+ + P+ +RI T+P + E+ +++R + +H+P QS
Sbjct: 339 GLRFAHLLDQ-VSRIDPE----MRIRFTSP-HPKDFPDEVLQLIRERDNICKQIHLPAQS 392
Query: 315 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374
GS VL AM R Y+ + ++ + E +PG+ +++D I GF GET+ED QTV+L++E
Sbjct: 393 GSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREV 452
Query: 375 KFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 414
++ + + R T A R+K +P V +R EL +VF
Sbjct: 453 QYNIGFLFAYSMRQKTRAYHRLKDDIPEEVKLRRLEELITVF 494
Score = 165 (63.1 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 55/210 (26%), Positives = 99/210 (47%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC N +D+E L GY T N +EAD+ L+ TC+++ ++ + + +
Sbjct: 104 VYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQ 163
Query: 121 CKSAKK-------PLVVA--GCVPQGSRD--LKELEGVSIVG----VQQIDRVVEVVEET 165
KS K PL + GC+ + ++ L + V I+ + + +++ V E
Sbjct: 164 LKSLKSKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAESG 223
Query: 166 LKGHEVRLLHRKKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ V LL + A +P + + + I GC C+YC RG S V
Sbjct: 224 QQAANV-LLSLDETYADVMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVA 282
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
S++ VR + G+KEV L ++ ++ RD
Sbjct: 283 SILEEVRKLSEQGLKEVTLLGQNVNSF-RD 311
Score = 39 (18.8 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 394 RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGY 449
R+K +P V +R EL +VF EA G + + + + L G G
Sbjct: 473 RLKDDIPEEVKLRRLEELITVFREEATKANKSFVGCTQLVLVEGPSKRSAADLCGRNDGN 532
Query: 450 VQVLVP------STGNML------GTSALVKITSVGRWSVFGEVI 482
++V+ +T + L G LVKITS ++ G V+
Sbjct: 533 LKVIFADAEMEDATDSRLRVRAQPGDYVLVKITSASSQTLKGHVL 577
>UNIPROTKB|Q8EA37 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_01865 InterPro:IPR005839
InterPro:IPR005840 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 EMBL:AE014299
GenomeReviews:AE014299_GR Gene3D:2.40.50.140 InterPro:IPR012340
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 OMA:RVDTEHM RefSeq:NP_719602.1
ProteinModelPortal:Q8EA37 PRIDE:Q8EA37 GeneID:1171692
KEGG:son:SO_4072 PATRIC:23527796 Uniprot:Q8EA37
Length = 481
Score = 293 (108.2 bits), Expect = 3.3e-23, P = 3.3e-23
Identities = 90/354 (25%), Positives = 169/354 (47%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
+ GC N DSE + QL GY +T++ + AD+ ++NTC + + + ++D + +
Sbjct: 44 SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEESLDAVREALEE 103
Query: 124 AKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
K ++V GC+ ++E+ + + I G + V++ V + + E H
Sbjct: 104 NGK-VIVTGCLGAKENQIREVHPDVLEITGPHSYEAVLKHVHKYVPKPE----HNPFTSL 158
Query: 182 LDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+ V+ K L I+ GC CT+C RG L S S++ + ++ GV+E
Sbjct: 159 IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPALRGDLDSRGAGSVLDEAKRLVEAGVQE 218
Query: 241 VWLSSEDTGAYGRDIGVN------LPIL--LNAIVAELPPDGSTMLRIGMTNP-PFILEH 291
+ + S+DT AYG+D G +P+ + ++ +L G+ +R+ P P++ +
Sbjct: 219 ILVVSQDTSAYGKDKGGRTDFWNGMPVKQDITSLARQLGKMGA-WVRLHYIYPYPWVDDL 277
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
+ +AE L P +L +P+Q S +L M R + + E+ P + I +
Sbjct: 278 IPLMAEGLILP----YLDIPMQHASPRILKMMKRPGRVDRQLEAIQRWREICPDLVIRST 333
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
I GFPGET+EDF ++ ++E + +V ++ G A + ++ S VK+
Sbjct: 334 FIVGFPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVANTIAELISEEVKE 387
>TIGR_CMR|SO_4072 [details] [associations]
symbol:SO_4072 "MiaB-like putative RNA modifying enzyme
YliG" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0009451 "RNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 OMA:RVDTEHM RefSeq:NP_719602.1
ProteinModelPortal:Q8EA37 PRIDE:Q8EA37 GeneID:1171692
KEGG:son:SO_4072 PATRIC:23527796 Uniprot:Q8EA37
Length = 481
Score = 293 (108.2 bits), Expect = 3.3e-23, P = 3.3e-23
Identities = 90/354 (25%), Positives = 169/354 (47%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
+ GC N DSE + QL GY +T++ + AD+ ++NTC + + + ++D + +
Sbjct: 44 SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEESLDAVREALEE 103
Query: 124 AKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
K ++V GC+ ++E+ + + I G + V++ V + + E H
Sbjct: 104 NGK-VIVTGCLGAKENQIREVHPDVLEITGPHSYEAVLKHVHKYVPKPE----HNPFTSL 158
Query: 182 LDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+ V+ K L I+ GC CT+C RG L S S++ + ++ GV+E
Sbjct: 159 IPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPALRGDLDSRGAGSVLDEAKRLVEAGVQE 218
Query: 241 VWLSSEDTGAYGRDIGVN------LPIL--LNAIVAELPPDGSTMLRIGMTNP-PFILEH 291
+ + S+DT AYG+D G +P+ + ++ +L G+ +R+ P P++ +
Sbjct: 219 ILVVSQDTSAYGKDKGGRTDFWNGMPVKQDITSLARQLGKMGA-WVRLHYIYPYPWVDDL 277
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
+ +AE L P +L +P+Q S +L M R + + E+ P + I +
Sbjct: 278 IPLMAEGLILP----YLDIPMQHASPRILKMMKRPGRVDRQLEAIQRWREICPDLVIRST 333
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
I GFPGET+EDF ++ ++E + +V ++ G A + ++ S VK+
Sbjct: 334 FIVGFPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVANTIAELISEEVKE 387
>UNIPROTKB|Q48FA7 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_01865
InterPro:IPR005839 InterPro:IPR005840 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000058 GenomeReviews:CP000058_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 RefSeq:YP_275930.1 ProteinModelPortal:Q48FA7
STRING:Q48FA7 GeneID:3560255 KEGG:psp:PSPPH_3792 PATRIC:19977023
Uniprot:Q48FA7
Length = 447
Score = 290 (107.1 bits), Expect = 4.5e-23, P = 4.5e-23
Identities = 94/367 (25%), Positives = 163/367 (44%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P + + GC DSE + QL GY + E+AD+ ++NTC +++
Sbjct: 7 PSAPKVGFVSLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESL 66
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRL 173
+I + ++V GC+ + ++++ +S+ G QQ ++VV V H+V
Sbjct: 67 EVIGEAIKENGKVIVTGCMGVDANVIRDVHPSVLSVTGPQQYEQVVNAV------HDVVP 120
Query: 174 LHRKKLPALDL--PK-VRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ P +DL P+ V+ + L I+ GC +C++C RG L S V ++
Sbjct: 121 PRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE 180
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELPPDGSTMLRIG 281
+ ++ GVKE+ + S+DT AYG D+ G + + + L G +R+
Sbjct: 181 AKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSMG-VWVRLH 239
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
P H+ E+ ++ + +L +P Q S +L M R + E
Sbjct: 240 YVYP---YPHVDELIPLMAAGKILPYLDIPFQHASPKILKLMKRPAFEDKTLARIKNWRE 296
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VP 399
P + I + I GFPGET+EDF ++ + E + +V Q+ P G PA + VP
Sbjct: 297 QCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVP 356
Query: 400 SAVVKKR 406
V + R
Sbjct: 357 DDVKQDR 363
>UNIPROTKB|Q87Y01 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 RefSeq:NP_793781.1 ProteinModelPortal:Q87Y01
GeneID:1185698 KEGG:pst:PSPTO_4019 PATRIC:19999525
BioCyc:PSYR223283:GJIX-4085-MONOMER Uniprot:Q87Y01
Length = 443
Score = 285 (105.4 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 94/360 (26%), Positives = 161/360 (44%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
M + GC DSE + QL GY + E+AD+ ++NTC +++ +I +
Sbjct: 10 MISLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEVIGEAI 69
Query: 123 SAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
++V GC+ + ++ + +S+ G QQ ++VV V H+V + P
Sbjct: 70 KENGKVIVTGCMGVDASVIRAVHPSVLSVTGPQQYEQVVNAV------HDVVPPRKDHNP 123
Query: 181 ALDL--PK-VRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+DL P+ V+ + L I+ GC +C++C RG L S V ++ + ++
Sbjct: 124 LIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAKRLVKS 183
Query: 237 GVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
GVKE+ + S+DT AYG D+ G + + + L G +R+ P
Sbjct: 184 GVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSMG-VWVRLHYVYP--- 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
H+ E+ ++ + +L +P Q S +L M R + E P + I
Sbjct: 240 YPHVDELIPLMAAGKILPYLDIPFQHASPKILKLMKRPAFEDKTLARIKNWREQCPDLII 299
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKR 406
+ I GFPGET+EDF ++ + E + +V Q+ P G PA + VP V + R
Sbjct: 300 RSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDVKQDR 359
>UNIPROTKB|Q96SZ6 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit-associated protein
1" species:9606 "Homo sapiens" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0007420 "brain development" evidence=NAS]
[GO:0045664 "regulation of neuron differentiation" evidence=NAS]
[GO:0045736 "negative regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IDA] [GO:0019901
"protein kinase binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:CH471077 GO:GO:0045664 GO:GO:0019901 GO:GO:0007420
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0006400
GO:GO:0045736 EMBL:AL355392 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:AF152097 EMBL:AF161516 EMBL:AK023992 EMBL:AK027449
EMBL:AK292075 EMBL:BC001215 EMBL:BC050706 IPI:IPI00306312
IPI:IPI00328276 IPI:IPI00328277 IPI:IPI00328278 RefSeq:NP_057166.3
RefSeq:NP_057492.2 UniGene:Hs.435952 ProteinModelPortal:Q96SZ6
SMR:Q96SZ6 IntAct:Q96SZ6 STRING:Q96SZ6 PhosphoSite:Q96SZ6
DMDM:32129446 PaxDb:Q96SZ6 PRIDE:Q96SZ6 DNASU:51654
Ensembl:ENST00000339269 Ensembl:ENST00000346416
Ensembl:ENST00000357886 Ensembl:ENST00000452723 GeneID:51654
KEGG:hsa:51654 UCSC:uc002wyy.3 UCSC:uc002wyz.3 UCSC:uc010gek.3
UCSC:uc010gem.3 CTD:51654 GeneCards:GC20M031946 HGNC:HGNC:15880
MIM:608200 neXtProt:NX_Q96SZ6 PharmGKB:PA26313 HOVERGEN:HBG050975
InParanoid:Q96SZ6 PhylomeDB:Q96SZ6 ChiTaRS:CDK5RAP1
GenomeRNAi:51654 NextBio:55620 ArrayExpress:Q96SZ6 Bgee:Q96SZ6
CleanEx:HS_CDK5RAP1 Genevestigator:Q96SZ6
GermOnline:ENSG00000101391 Uniprot:Q96SZ6
Length = 601
Score = 192 (72.6 bits), Expect = 6.4e-21, Sum P(2) = 6.4e-21
Identities = 65/210 (30%), Positives = 106/210 (50%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLR--HPC--VYSFLHV 310
G+ LL+ V+ + P+ +RI T+P H K+ EVL+ H + +H+
Sbjct: 351 GLRFAHLLDQ-VSRVDPE----MRIRFTSP-----HPKDFPDEVLQLIHERDNICKQIHL 400
Query: 311 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 370
P QSGS VL AM R Y+ + +V + E +PG+ +++D I GF GET+ED QTV+L
Sbjct: 401 PAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSL 460
Query: 371 IKEYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGR 426
++E ++ + + R T A R+K VP V +R EL ++F EA G
Sbjct: 461 LREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGC 520
Query: 427 VERIWITEIAA-DGIHLVGHTKGYVQVLVP 455
+ + + ++ L G G ++V+ P
Sbjct: 521 TQLVLVEGLSKRSATDLCGRNDGNLKVIFP 550
Score = 135 (52.6 bits), Expect = 6.4e-21, Sum P(2) = 6.4e-21
Identities = 46/187 (24%), Positives = 86/187 (45%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC N +D+E L GY T N +EAD+ L+ TC+++ ++ + + +
Sbjct: 102 VYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQ 161
Query: 121 CKSAKK-------PLVVA--GCVPQGSRD--LKELEGVSIVG----VQQIDRVVEVVEET 165
K+ K PL + GC+ + ++ L + V I+ + + R++ V E
Sbjct: 162 LKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESG 221
Query: 166 LKGHEVRLLHRKKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ V LL + A +P + + + I GC C+YC RG S +
Sbjct: 222 QQAANV-LLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIA 280
Query: 225 SLVGRVR 231
S++ V+
Sbjct: 281 SILEEVK 287
Score = 43 (20.2 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 27/105 (25%), Positives = 42/105 (40%)
Query: 394 RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGY 449
R+K VP V +R EL ++F EA G + + + ++ L G G
Sbjct: 485 RLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGN 544
Query: 450 VQVLVPST-----GN-------MLGTSALVKITSVGRWSVFGEVI 482
++V+ P N G LVKITS ++ G V+
Sbjct: 545 LKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL 589
>TAIR|locus:2115410 [details] [associations]
symbol:AT4G36390 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0006655 "phosphatidylglycerol biosynthetic
process" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0009073 "aromatic amino acid
family biosynthetic process" evidence=RCA] [GO:0009691 "cytokinin
biosynthetic process" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0010155 "regulation of
proton transport" evidence=RCA] [GO:0016226 "iron-sulfur cluster
assembly" evidence=RCA] [GO:0046777 "protein autophosphorylation"
evidence=RCA] InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0000079
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:AL161589 EMBL:Z99708
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:BT002022 EMBL:BT008395 IPI:IPI00522311 PIR:E85429
RefSeq:NP_195357.2 UniGene:At.27708 ProteinModelPortal:Q8H0V1
SMR:Q8H0V1 STRING:Q8H0V1 PaxDb:Q8H0V1 PRIDE:Q8H0V1
EnsemblPlants:AT4G36390.1 GeneID:829791 KEGG:ath:AT4G36390
TAIR:At4g36390 HOGENOM:HOG000224767 InParanoid:Q8H0V1 OMA:CGRTDGN
PhylomeDB:Q8H0V1 ProtClustDB:CLSN2680299 Genevestigator:Q8H0V1
GermOnline:AT4G36390 TIGRFAMs:TIGR01574 Uniprot:Q8H0V1
Length = 640
Score = 177 (67.4 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 55/206 (26%), Positives = 99/206 (48%)
Query: 253 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR--HPCVYSFLHV 310
+++G+ LL+ + E P +R T+P ++ E+ ++R H + + +H+
Sbjct: 371 KNMGLRFADLLDRLSVEFPE-----MRFRFTSP-HPKDYPDELLYLMRDRHN-ICNLIHL 423
Query: 311 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 370
P QSG+ +L M R YT + +V + ++P + I +D I GF GET+E+ +T++L
Sbjct: 424 PAQSGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFITGFCGETEEEHQETLSL 483
Query: 371 IKEYKFPQVHISQFYPRPGTPAAR--MKKVPSAVVKKRSRELTSVFEAFT-P-YLGMEGR 426
++ + ++ + R T A R VP V ++R EL F T P Y G
Sbjct: 484 VRAVGYDMAYMFAYSMREKTHAHRNYTDDVPEEVKQRRLTELIDAFRETTGPCYDSQVGS 543
Query: 427 VERIWIT--EIAADGIHLVGHT-KGY 449
+ + + A L+G T KG+
Sbjct: 544 TQLVLVEGPNKRAPETELIGKTDKGH 569
Score = 130 (50.8 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 49/200 (24%), Positives = 84/200 (42%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
MK G +D E A + A+ +N+E+ +W + ++ + K
Sbjct: 152 MKNSGYKEVVTDPE-SAEVIFVNTCAIRENAEQR-VWQRLNYFWFLKREWKVNAATGRAK 209
Query: 123 SAKKP-LVVAGCVPQGSRDLKELEGVSIVGV-------QQIDRVVEVVEETLKGHEVRLL 174
S K P +VV GC+ + +D K L+ +V V + + R++E V+ KG L
Sbjct: 210 SLKPPKVVVLGCMAERLKD-KILDSDKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLS 268
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ + ++ N + + GC C +C RG S VES++ V +
Sbjct: 269 LEETYADISPVRISENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELW 328
Query: 235 ADGVKEVWLSSEDTGAYGRD 254
GVKEV L ++ +Y D
Sbjct: 329 ESGVKEVTLLGQNVNSYNDD 348
Score = 85 (35.0 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVK 107
+L I IY +T+GC N +D E + + GY +TD E A++ +NTC ++
Sbjct: 120 TLDSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTD-PESAEVIFVNTCAIR 178
Query: 108 SPSQ 111
++
Sbjct: 179 ENAE 182
>TIGR_CMR|SPO_0944 [details] [associations]
symbol:SPO_0944 "RNA modification enzyme, MiaB-family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 Gene3D:2.40.50.140
InterPro:IPR012340 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:CPDITLR HOGENOM:HOG000224766 GO:GO:0018339
TIGRFAMs:TIGR01125 KO:K14441 ProtClustDB:PRK14862
RefSeq:YP_166197.1 ProteinModelPortal:Q5LUV8 GeneID:3196011
KEGG:sil:SPO0944 PATRIC:23375173 Uniprot:Q5LUV8
Length = 466
Score = 247 (92.0 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 97/420 (23%), Positives = 181/420 (43%)
Query: 36 NKPRLHDN--HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
N P L + ++ G+ + + PG TI M + GC DSE + +L A GY ++ +
Sbjct: 7 NPPNLRPDLAPAARLGTAATR-PGQPTIGMVSLGCPKALVDSERILTRLRAEGYGISPDY 65
Query: 94 EEADIWLINTCT-VKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG--VSIV 150
AD ++NTC + S ++D + K K ++V GC+ ++E +++
Sbjct: 66 AGADAVIVNTCGFLDSAKAESLDAIGEALKENGK-VIVTGCLGAEPDYIREHHPRILAVT 124
Query: 151 GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
G Q ++V++ V + + LPA + R+ L I+ GC C +C
Sbjct: 125 GPHQYEQVLDAVHGAVPPDPDPFVDL--LPASGVQLTPRH--YSYLKISEGCNHKCKFCI 180
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN----AI 266
RG L S +++ ++ +GVKE+ + S+DT AYG D + + N +
Sbjct: 181 IPDMRGKLASRPAHAVLREAEKLVDNGVKELLIISQDTSAYGLDRKYDTNLWKNREVRSH 240
Query: 267 VAELPPD-GS--TMLRIGMTNPPFILEHLKEIAEVLRHP-C-VYSFLHVPVQSGSDAVLS 321
+ +L + G +R+ P H++E+ ++ C + +L +P Q L
Sbjct: 241 ITDLARELGQLDAWVRLHYVYP---YPHVRELIPLMADAGCNLLPYLDIPFQHAHPDTLK 297
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
M R + + E+ P + + + I G+PGET+ +F ++ + E + +V
Sbjct: 298 RMARPAAAARTLDEIAAWREICPEITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGC 357
Query: 382 SQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIW-ITEIAADGI 440
Q+ G AR +P V + +E F A + R+ + E+ D +
Sbjct: 358 FQYENVAG---ARSNDLPDHVPAEVKQERWDRFMAKAQAISEAKLAARVGQVIEVIVDEV 414
>TIGR_CMR|SPO_0277 [details] [associations]
symbol:SPO_0277 "MiaB-like tRNA modifying enzyme"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0016740 GO:GO:0051539
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_165541.1 ProteinModelPortal:Q5LX67
GeneID:3196395 KEGG:sil:SPO0277 PATRIC:23373805
ProtClustDB:CLSK933203 Uniprot:Q5LX67
Length = 418
Score = 244 (91.0 bits), Expect = 7.3e-18, P = 7.3e-18
Identities = 99/407 (24%), Positives = 184/407 (45%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS--QSAMDTLIAKCK 122
T GC N ++E M +LSA A DN+ ++NTC V + + ++ + + +
Sbjct: 8 TLGCRLNAYETEAMK-ELSA--QAGLDNAV-----IVNTCAVTAEAVRKARQEIRRLRRE 59
Query: 123 SAKKPLVVAGCVPQGSRD----LKELEGVSIVGVQQI------DRVVEVVEET--LKGHE 170
+ L+V GC Q + + E++ V I +++ + + ET ++ +
Sbjct: 60 NPTARLIVTGCAAQTEPETFTAMAEVDAV-IGNTEKMRPETWKSMTADFIGETEAVQVDD 118
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + +D R +V++ N GC CT+C + RG+ S +V ++
Sbjct: 119 IMSVTETAGHLIDGFGTRSRAYVQVQ--N-GCDHRCTFCIIPYGRGNSRSVPAGVVVDQI 175
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFI 288
+ ++ G EV L+ D ++G D+ P L + + + L PD LRI + +
Sbjct: 176 KRLVDRGYNEVVLTGVDLTSWGADLPAQ-PKLGDLVMRILRLVPD-LPRLRISSIDSIEV 233
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E+L + + P + LH+ +Q G D +L M R + D + L P M
Sbjct: 234 DENLMQ--GIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIRFAEEARRLRPEMTF 291
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
DII GFP ET+ F ++ L+ + +H+ + R GTPAA++ +V ++K+R+
Sbjct: 292 GADIIAGFPTETEAHFENSLKLVDDCHLTWLHVFPYSRREGTPAAKIPSQVNGKIIKERA 351
Query: 408 RELTSVFEAFTP-YLGME-GRVERIWITEIAADGIHLVGHTKGYVQV 452
L + + +L + GR RI + + H+ G T+ + +V
Sbjct: 352 ARLRAAGDRRVALHLAEQVGRSHRILM-----ESPHM-GRTEQFTEV 392
>UNIPROTKB|E2RIW1 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
InterPro:IPR005839 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0016740
GO:GO:0051539 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 Pfam:PF01938 EMBL:AAEX03013894
Ensembl:ENSCAFT00000011867 Uniprot:E2RIW1
Length = 583
Score = 160 (61.4 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 56/208 (26%), Positives = 97/208 (46%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV--- 312
G+ LL+ V+ + P+ +RI T+P H K+ + + V F H+ V
Sbjct: 335 GLRFTYLLDQ-VSRVDPE----MRIRFTSP-----HPKDFPDEVLQLIVLEFKHIFVCSL 384
Query: 313 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372
SG + + Y+ + ++ + E +PG+ +++D I GF GET+ED QTV+L++
Sbjct: 385 TSGLTCIAEIRLKGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLR 444
Query: 373 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVE 428
E ++ + + R T A R+K VP V +R EL +VF EA + G +
Sbjct: 445 EVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGSTQ 504
Query: 429 RIWIT-EIAADGIHLVGHTKGYVQVLVP 455
+ + L G G ++V+ P
Sbjct: 505 LVLVEGHSKRSATDLCGRNDGNLKVIFP 532
Score = 115 (45.5 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 49/211 (23%), Positives = 92/211 (43%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-SEEADIWLINTCTVKSPSQSAMDTLIA 119
IY+ + C Q + ++S + T N +EAD+ L+ TC+++ ++ + +
Sbjct: 99 IYINIYICCSPQFSDINIDKKVSQGRFKKTPNVCKEADVILLVTCSIREKAEQTIWNRLQ 158
Query: 120 KCKSAKK-------PLVVA--GCVPQGSRD--LKELEGVSIVG----VQQIDRVVEVVEE 164
+ K+ K PL + GC+ + ++ L + V I+ + + R++ V E
Sbjct: 159 QLKALKTKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAES 218
Query: 165 TLKGHEVRL----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
+ V L + +P P + FV I+ GC C+YC RG S
Sbjct: 219 GQQAANVLLSLDETYADVMPVQTSPSAT-SAFVSIMR---GCDNMCSYCIVPFTRGRERS 274
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAY 251
V S++ VR + G+KEV L ++ ++
Sbjct: 275 RPVASILEEVRKLSEQGLKEVTLLGQNVNSF 305
>UNIPROTKB|Q675N4 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit associated protein
1 transcript variant 4" species:9606 "Homo sapiens" [GO:0009451
"RNA modification" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AL355392
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 UniGene:Hs.435952 HGNC:HGNC:15880
HOVERGEN:HBG050975 ChiTaRS:CDK5RAP1 EMBL:AY462284 IPI:IPI01014266
SMR:Q675N4 STRING:Q675N4 Ensembl:ENST00000544843 Uniprot:Q675N4
Length = 426
Score = 163 (62.4 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 56/223 (25%), Positives = 104/223 (46%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC N +D+E L GY T N +EAD+ L+ TC+++ ++ + + +
Sbjct: 102 VYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQ 161
Query: 121 CKSAKK-------PLVVA--GCVPQGSRD--LKELEGVSIVG----VQQIDRVVEVVEET 165
K+ K PL + GC+ + ++ L + V I+ + + R++ V E
Sbjct: 162 LKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESG 221
Query: 166 LKGHEVRLLHRKKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ V LL + A +P + + + I GC C+YC RG S +
Sbjct: 222 QQAANV-LLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIA 280
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
S++ V+ + G+KEV L ++ ++ RD N + N+ V
Sbjct: 281 SILEEVKKLSEQGLKEVTLLGQNVNSF-RD---NSEVQFNSAV 319
Score = 75 (31.5 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLR--HPC--VYSFLHV 310
G+ LL+ V+ + P+ +RI T+P H K+ EVL+ H + +H+
Sbjct: 337 GLRFAHLLDQ-VSRVDPE----MRIRFTSP-----HPKDFPDEVLQLIHERDNICKQIHL 386
Query: 311 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P QSGS VL AM R Y+ + +V + E +P
Sbjct: 387 PAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP 420
>RGD|1310246 [details] [associations]
symbol:Cdkal1 "CDK5 regulatory subunit associated protein 1-like
1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] InterPro:IPR013848 Pfam:PF00919
PROSITE:PS51449 RGD:1310246 GO:GO:0003824 GO:GO:0051539
GO:GO:0009451 OrthoDB:EOG4RJG1D IPI:IPI00947777
Ensembl:ENSRNOT00000066308 UCSC:RGD:1310246 ArrayExpress:D3ZGD9
Uniprot:D3ZGD9
Length = 133
Score = 148 (57.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 34/99 (34%), Positives = 52/99 (52%)
Query: 1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED++ F + V PK + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRHF----SRKHVFPKVRRRNTQKYLQEEPSPPSDST-IPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
I+++T+GCSHN SD EYMAGQL+A+GY +T ++ W
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITAQCGKSQAW 103
>UNIPROTKB|H0Y721 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit-associated protein
1" species:9606 "Homo sapiens" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR006638 InterPro:IPR013848 PROSITE:PS51449 SMART:SM00729
GO:GO:0003824 GO:GO:0051539 EMBL:AL355392 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
Pfam:PF01938 HGNC:HGNC:15880 ChiTaRS:CDK5RAP1
ProteinModelPortal:H0Y721 PRIDE:H0Y721 Ensembl:ENST00000427097
Bgee:H0Y721 Uniprot:H0Y721
Length = 256
Score = 143 (55.4 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 45/151 (29%), Positives = 77/151 (50%)
Query: 310 VPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 369
+PVQ+ + A SA Y+ + +V + E +PG+ +++D I GF GET+ED QTV+
Sbjct: 58 MPVQTSASAT-SAF--VYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVS 114
Query: 370 LIKEYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEG 425
L++E ++ + + R T A R+K VP V +R EL ++F EA G
Sbjct: 115 LLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVG 174
Query: 426 RVERIWITEIAA-DGIHLVGHTKGYVQVLVP 455
+ + + ++ L G G ++V+ P
Sbjct: 175 CTQLVLVEGLSKRSATDLCGRNDGNLKVIFP 205
>UNIPROTKB|Q74FM0 [details] [associations]
symbol:yhcC-2 "Radical SAM domain iron-sulfur
cluster-binding oxidoreductase, TIGR01212 family" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.80.30.20
InterPro:IPR023404 KO:K07139 InterPro:IPR005911 TIGRFAMs:TIGR01212
HOGENOM:HOG000027269 RefSeq:NP_951644.1 ProteinModelPortal:Q74FM0
GeneID:2685847 KEGG:gsu:GSU0586 PATRIC:22023921 OMA:HLIYGFP
ProtClustDB:CLSK2306727 BioCyc:GSUL243231:GH27-562-MONOMER
Uniprot:Q74FM0
Length = 319
Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
LE L ++A+ H Y + + +QS DA+L +NR +TL ++ VD + G+ +
Sbjct: 136 LELLADLAQ--EH---YVCIELGLQSMDDAILERINRGHTLDEYLRTVDRIAGR--GIAL 188
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
T +I GFPGET E F +T +L+ V + Q + GT A +
Sbjct: 189 CTHLIYGFPGETREGFLKTAHLLAGLPVDSVKLHQLHAVKGTRLAEL 235
>TIGR_CMR|GSU_0586 [details] [associations]
symbol:GSU_0586 "radical SAM protein, TIGR01212 family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.80.30.20
InterPro:IPR023404 KO:K07139 InterPro:IPR005911 TIGRFAMs:TIGR01212
HOGENOM:HOG000027269 RefSeq:NP_951644.1 ProteinModelPortal:Q74FM0
GeneID:2685847 KEGG:gsu:GSU0586 PATRIC:22023921 OMA:HLIYGFP
ProtClustDB:CLSK2306727 BioCyc:GSUL243231:GH27-562-MONOMER
Uniprot:Q74FM0
Length = 319
Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
LE L ++A+ H Y + + +QS DA+L +NR +TL ++ VD + G+ +
Sbjct: 136 LELLADLAQ--EH---YVCIELGLQSMDDAILERINRGHTLDEYLRTVDRIAGR--GIAL 188
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
T +I GFPGET E F +T +L+ V + Q + GT A +
Sbjct: 189 CTHLIYGFPGETREGFLKTAHLLAGLPVDSVKLHQLHAVKGTRLAEL 235
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 629 602 0.00086 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 77
No. of states in DFA: 625 (66 KB)
Total size of DFA: 327 KB (2166 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 49.89u 0.08s 49.97t Elapsed: 00:00:35
Total cpu time: 49.92u 0.08s 50.00t Elapsed: 00:00:35
Start: Fri May 10 18:01:15 2013 End: Fri May 10 18:01:50 2013