Query 006836
Match_columns 629
No_of_seqs 501 out of 2517
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 15:11:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4355 Predicted Fe-S oxidore 100.0 1.2E-98 3E-103 770.0 42.9 482 1-490 1-483 (547)
2 COG0621 MiaB 2-methylthioadeni 100.0 1.9E-91 4.1E-96 755.1 46.6 419 58-482 2-436 (437)
3 PRK14340 (dimethylallyl)adenos 100.0 1.8E-80 3.9E-85 682.8 50.1 424 56-484 4-442 (445)
4 PRK14327 (dimethylallyl)adenos 100.0 3.9E-80 8.3E-85 686.3 51.2 422 55-483 63-504 (509)
5 PRK14332 (dimethylallyl)adenos 100.0 1.4E-79 3E-84 676.1 50.5 420 57-482 9-448 (449)
6 PRK14335 (dimethylallyl)adenos 100.0 7.2E-79 1.6E-83 672.4 49.8 424 59-484 1-453 (455)
7 PRK14330 (dimethylallyl)adenos 100.0 1.1E-78 2.5E-83 668.1 51.1 419 59-485 1-433 (434)
8 PRK14329 (dimethylallyl)adenos 100.0 1.7E-78 3.7E-83 671.2 51.1 425 53-483 18-466 (467)
9 PRK14331 (dimethylallyl)adenos 100.0 1.3E-77 2.8E-82 660.0 50.1 419 60-484 2-436 (437)
10 PRK14326 (dimethylallyl)adenos 100.0 2.2E-77 4.9E-82 666.4 52.4 425 52-482 7-455 (502)
11 PRK14333 (dimethylallyl)adenos 100.0 1.7E-77 3.8E-82 660.8 50.7 418 58-482 6-447 (448)
12 PRK14337 (dimethylallyl)adenos 100.0 8.4E-77 1.8E-81 654.8 50.5 418 59-482 4-445 (446)
13 PRK14336 (dimethylallyl)adenos 100.0 8.6E-77 1.9E-81 649.5 49.8 403 58-486 1-417 (418)
14 PRK14325 (dimethylallyl)adenos 100.0 1.3E-76 2.8E-81 653.7 50.8 423 58-485 3-442 (444)
15 TIGR01578 MiaB-like-B MiaB-lik 100.0 1E-76 2.3E-81 649.6 49.3 416 60-482 1-420 (420)
16 PRK14328 (dimethylallyl)adenos 100.0 5.3E-76 1.2E-80 647.6 50.0 420 59-483 2-439 (439)
17 TIGR01574 miaB-methiolase tRNA 100.0 9.8E-76 2.1E-80 645.3 49.3 418 60-482 1-438 (438)
18 PRK14338 (dimethylallyl)adenos 100.0 6.2E-75 1.4E-79 641.8 51.1 425 50-489 12-454 (459)
19 TIGR00089 RNA modification enz 100.0 7E-75 1.5E-79 637.4 47.5 412 60-479 1-429 (429)
20 PRK14862 rimO ribosomal protei 100.0 8.5E-75 1.8E-79 637.6 47.4 413 55-482 4-440 (440)
21 TIGR01125 MiaB-like tRNA modif 100.0 2.1E-74 4.5E-79 633.8 48.3 413 60-479 1-430 (430)
22 PRK14339 (dimethylallyl)adenos 100.0 2.9E-74 6.2E-79 630.0 48.5 404 70-482 1-419 (420)
23 PRK14334 (dimethylallyl)adenos 100.0 1.5E-73 3.4E-78 628.1 49.6 419 60-488 2-433 (440)
24 TIGR01579 MiaB-like-C MiaB-lik 100.0 1.6E-73 3.6E-78 623.9 45.3 399 63-469 1-414 (414)
25 KOG2492 CDK5 activator-binding 100.0 5.4E-58 1.2E-62 473.7 30.7 425 54-484 68-549 (552)
26 TIGR02026 BchE magnesium-proto 100.0 8.5E-36 1.8E-40 333.4 31.0 306 73-394 23-385 (497)
27 PRK00955 hypothetical protein; 100.0 9.8E-35 2.1E-39 325.1 28.6 200 192-396 292-528 (620)
28 TIGR03471 HpnJ hopanoid biosyn 100.0 3.3E-34 7.1E-39 318.9 28.6 280 94-394 67-385 (472)
29 PRK01254 hypothetical protein; 100.0 4.2E-33 9.2E-38 309.6 25.4 200 192-394 372-608 (707)
30 PRK05481 lipoyl synthase; Prov 100.0 4.6E-30 1E-34 268.2 23.4 211 190-418 51-263 (289)
31 COG1032 Fe-S oxidoreductase [E 100.0 3.5E-26 7.6E-31 253.2 28.9 325 72-406 31-415 (490)
32 COG1031 Uncharacterized Fe-S o 100.0 1.1E-25 2.4E-30 237.7 30.6 396 75-484 26-508 (560)
33 PRK07094 biotin synthase; Prov 99.9 1.1E-24 2.5E-29 231.1 24.1 196 192-403 39-236 (323)
34 TIGR00510 lipA lipoate synthas 99.9 1.1E-23 2.4E-28 220.6 22.5 195 190-396 61-258 (302)
35 PRK12928 lipoyl synthase; Prov 99.9 1.6E-23 3.4E-28 218.8 23.2 209 190-416 58-269 (290)
36 PF00919 UPF0004: Uncharacteri 99.9 8.1E-25 1.8E-29 192.7 10.1 92 60-151 1-98 (98)
37 PRK05904 coproporphyrinogen II 99.9 1.9E-23 4E-28 224.4 21.1 210 194-416 9-225 (353)
38 PRK08599 coproporphyrinogen II 99.9 8.9E-23 1.9E-27 221.2 21.1 193 192-395 2-200 (377)
39 PRK05628 coproporphyrinogen II 99.9 3.9E-22 8.5E-27 216.1 24.3 213 193-416 4-235 (375)
40 TIGR01212 radical SAM protein, 99.9 8.8E-22 1.9E-26 207.3 21.3 191 194-395 20-226 (302)
41 PRK09058 coproporphyrinogen II 99.9 1.3E-21 2.7E-26 216.6 22.6 194 191-395 61-263 (449)
42 PRK05799 coproporphyrinogen II 99.9 1.4E-21 3E-26 211.7 21.8 191 193-395 5-199 (374)
43 PRK08446 coproporphyrinogen II 99.9 1.4E-21 3E-26 209.9 19.4 183 202-396 10-199 (350)
44 PRK08207 coproporphyrinogen II 99.9 5.1E-21 1.1E-25 213.0 24.1 215 191-415 163-393 (488)
45 PRK07379 coproporphyrinogen II 99.9 9.2E-21 2E-25 207.0 25.0 192 193-395 12-215 (400)
46 PRK06256 biotin synthase; Vali 99.9 5.4E-21 1.2E-25 204.2 21.9 192 199-406 65-260 (336)
47 PRK08208 coproporphyrinogen II 99.9 1.6E-20 3.5E-25 206.9 22.7 201 191-402 39-248 (430)
48 TIGR01210 conserved hypothetic 99.9 8.4E-21 1.8E-25 200.8 19.4 192 192-396 15-222 (313)
49 PRK09057 coproporphyrinogen II 99.9 3.1E-20 6.7E-25 201.6 23.6 211 194-415 7-229 (380)
50 TIGR00539 hemN_rel putative ox 99.9 2.3E-20 5E-25 201.2 22.4 195 195-400 4-206 (360)
51 PRK08898 coproporphyrinogen II 99.9 2.9E-20 6.4E-25 202.7 23.4 200 192-402 20-229 (394)
52 TIGR00433 bioB biotin syntheta 99.9 8.5E-20 1.8E-24 191.2 24.5 197 193-405 29-230 (296)
53 smart00729 Elp3 Elongator prot 99.8 4.2E-20 9.2E-25 180.5 18.6 194 193-396 2-201 (216)
54 PRK06245 cofG FO synthase subu 99.8 4.2E-20 9.1E-25 197.4 20.2 199 193-403 13-228 (336)
55 PLN02428 lipoic acid synthase 99.8 1.4E-19 3E-24 192.1 23.6 208 192-416 102-312 (349)
56 PRK05660 HemN family oxidoredu 99.8 2.2E-19 4.8E-24 194.8 24.5 198 192-400 7-213 (378)
57 PRK06582 coproporphyrinogen II 99.8 1.4E-19 3.1E-24 196.9 21.4 193 192-395 12-210 (390)
58 PRK06294 coproporphyrinogen II 99.8 8.9E-20 1.9E-24 197.3 19.4 188 193-395 8-203 (370)
59 PRK08629 coproporphyrinogen II 99.8 3.9E-19 8.5E-24 195.7 21.5 189 191-393 52-245 (433)
60 TIGR00538 hemN oxygen-independ 99.8 1.5E-18 3.4E-23 192.6 24.7 187 193-390 51-246 (455)
61 TIGR00423 radical SAM domain p 99.8 6E-19 1.3E-23 186.5 19.1 197 194-402 7-221 (309)
62 PRK13347 coproporphyrinogen II 99.8 2.5E-18 5.5E-23 190.7 24.1 189 191-390 50-247 (453)
63 PRK09249 coproporphyrinogen II 99.8 3E-18 6.6E-23 190.1 23.7 187 193-390 51-246 (453)
64 TIGR03550 F420_cofG 7,8-dideme 99.8 1E-18 2.2E-23 185.8 18.4 195 193-402 5-223 (322)
65 PRK06267 hypothetical protein; 99.8 5E-18 1.1E-22 182.3 22.0 188 193-402 28-222 (350)
66 TIGR03551 F420_cofH 7,8-dideme 99.8 4E-18 8.7E-23 182.7 17.6 190 194-395 41-245 (343)
67 TIGR01211 ELP3 histone acetylt 99.8 1.8E-17 4E-22 185.1 23.2 187 200-396 76-309 (522)
68 COG1242 Predicted Fe-S oxidore 99.8 2.9E-17 6.4E-22 165.5 20.9 191 195-396 27-232 (312)
69 cd01335 Radical_SAM Radical SA 99.8 3.4E-17 7.4E-22 157.6 18.8 185 196-395 1-189 (204)
70 TIGR03699 mena_SCO4550 menaqui 99.8 1.8E-17 3.8E-22 177.5 18.5 196 195-402 44-254 (340)
71 TIGR03700 mena_SCO4494 putativ 99.8 1.6E-17 3.5E-22 178.6 18.2 196 194-402 50-263 (351)
72 PRK08445 hypothetical protein; 99.8 2.1E-17 4.6E-22 177.2 19.0 191 195-395 45-248 (348)
73 PRK08508 biotin synthase; Prov 99.7 1.2E-16 2.6E-21 166.7 20.3 187 198-401 13-204 (279)
74 COG0635 HemN Coproporphyrinoge 99.7 1.5E-16 3.2E-21 174.3 20.5 214 191-415 34-262 (416)
75 PF04055 Radical_SAM: Radical 99.7 6E-17 1.3E-21 151.9 14.2 162 196-371 1-166 (166)
76 PLN02389 biotin synthase 99.7 6.4E-16 1.4E-20 167.2 23.8 198 192-405 82-287 (379)
77 PRK09240 thiH thiamine biosynt 99.7 4.5E-15 9.8E-20 160.7 20.1 196 193-406 75-281 (371)
78 PRK15108 biotin synthase; Prov 99.6 1.5E-14 3.3E-19 155.1 22.3 196 193-405 43-245 (345)
79 TIGR02351 thiH thiazole biosyn 99.6 4.6E-14 1E-18 152.7 19.3 200 193-410 74-284 (366)
80 COG1243 ELP3 Histone acetyltra 99.6 4.2E-14 9.1E-19 151.2 18.4 215 192-413 67-324 (515)
81 COG0502 BioB Biotin synthase a 99.6 8.2E-14 1.8E-18 146.6 19.9 194 192-402 50-249 (335)
82 PRK07360 FO synthase subunit 2 99.6 3.7E-14 8E-19 153.7 17.6 191 195-396 63-268 (371)
83 PRK08444 hypothetical protein; 99.6 9.4E-14 2E-18 149.2 19.1 197 195-402 52-262 (353)
84 PRK05926 hypothetical protein; 99.5 2.1E-13 4.5E-18 147.4 18.8 186 196-394 72-272 (370)
85 PRK00164 moaA molybdenum cofac 99.5 1.1E-12 2.4E-17 139.9 24.0 191 193-401 18-213 (331)
86 PRK09613 thiH thiamine biosynt 99.5 1.1E-12 2.4E-17 145.3 21.2 206 193-415 85-305 (469)
87 PRK13361 molybdenum cofactor b 99.5 3.5E-12 7.6E-17 136.2 23.4 196 193-406 15-214 (329)
88 PRK05927 hypothetical protein; 99.5 5.5E-13 1.2E-17 143.2 16.0 190 195-395 48-251 (350)
89 TIGR02666 moaA molybdenum cofa 99.5 9E-12 1.9E-16 133.2 23.4 183 193-393 11-199 (334)
90 PTZ00413 lipoate synthase; Pro 99.4 1.1E-11 2.3E-16 132.0 21.9 182 192-385 149-333 (398)
91 TIGR02668 moaA_archaeal probab 99.4 1.5E-11 3.3E-16 129.5 23.1 178 193-389 11-190 (302)
92 TIGR03822 AblA_like_2 lysine-2 99.4 1.6E-11 3.4E-16 130.8 22.1 190 189-402 85-282 (321)
93 PRK09234 fbiC FO synthase; Rev 99.4 5.8E-12 1.3E-16 148.2 20.0 188 194-393 528-730 (843)
94 PLN02951 Molybderin biosynthes 99.4 9.3E-11 2E-15 127.3 24.7 193 193-403 59-255 (373)
95 PRK09234 fbiC FO synthase; Rev 99.4 2.5E-11 5.4E-16 142.9 19.6 195 194-403 73-293 (843)
96 PRK14463 ribosomal RNA large s 99.3 2.5E-10 5.4E-15 122.7 23.3 183 191-390 102-293 (349)
97 TIGR02493 PFLA pyruvate format 99.3 2.7E-10 5.8E-15 115.6 20.0 174 194-387 17-200 (235)
98 PRK14455 ribosomal RNA large s 99.3 6.3E-10 1.4E-14 119.9 22.9 187 191-392 108-307 (356)
99 PRK14466 ribosomal RNA large s 99.2 1.6E-09 3.4E-14 115.7 24.4 192 191-402 102-302 (345)
100 PRK05301 pyrroloquinoline quin 99.2 3.9E-09 8.5E-14 114.8 25.5 178 190-386 14-193 (378)
101 PRK14456 ribosomal RNA large s 99.2 2E-09 4.4E-14 116.3 21.8 187 191-392 120-323 (368)
102 TIGR02109 PQQ_syn_pqqE coenzym 99.2 6.3E-09 1.4E-13 112.2 24.6 176 191-385 6-183 (358)
103 COG0320 LipA Lipoate synthase 99.1 3E-09 6.5E-14 107.9 19.4 181 191-385 69-251 (306)
104 COG1060 ThiH Thiamine biosynth 99.1 1.9E-09 4.1E-14 116.3 18.8 192 194-396 61-268 (370)
105 PRK14457 ribosomal RNA large s 99.1 1E-08 2.2E-13 110.0 24.1 190 191-392 100-300 (345)
106 TIGR00238 KamA family protein. 99.1 2.8E-09 6.1E-14 114.0 19.6 188 190-402 111-305 (331)
107 PRK14467 ribosomal RNA large s 99.1 9.8E-09 2.1E-13 110.2 23.0 190 191-392 98-299 (348)
108 PRK14470 ribosomal RNA large s 99.1 1.8E-08 4E-13 107.7 24.9 184 191-389 96-288 (336)
109 TIGR01290 nifB nitrogenase cof 99.1 1.9E-08 4.2E-13 111.5 25.0 205 192-412 24-257 (442)
110 PRK14460 ribosomal RNA large s 99.1 3.2E-08 6.9E-13 106.7 25.2 185 191-392 101-302 (354)
111 PRK14461 ribosomal RNA large s 99.1 1.3E-08 2.8E-13 109.1 21.7 187 191-393 106-323 (371)
112 PRK14453 chloramphenicol/florf 99.1 1.6E-08 3.4E-13 108.7 22.4 185 192-391 100-297 (347)
113 COG2100 Predicted Fe-S oxidore 99.1 1E-07 2.3E-12 98.6 26.9 265 195-481 110-413 (414)
114 PRK11145 pflA pyruvate formate 99.1 9.3E-09 2E-13 105.2 19.3 178 193-391 21-209 (246)
115 COG2896 MoaA Molybdenum cofact 99.1 1.9E-08 4.2E-13 105.9 21.6 194 194-406 13-211 (322)
116 PRK14459 ribosomal RNA large s 99.1 2.8E-08 6E-13 107.4 23.3 187 191-392 120-329 (373)
117 PRK11194 ribosomal RNA large s 99.1 3.7E-08 8E-13 106.6 24.2 185 191-392 102-307 (372)
118 TIGR02495 NrdG2 anaerobic ribo 99.0 2.3E-08 5.1E-13 98.1 20.4 163 192-375 16-183 (191)
119 PRK14468 ribosomal RNA large s 99.0 6E-08 1.3E-12 104.2 25.2 184 191-390 92-289 (343)
120 TIGR03470 HpnH hopanoid biosyn 99.0 3.7E-08 8.1E-13 104.9 22.6 198 191-412 27-227 (318)
121 TIGR00048 radical SAM enzyme, 99.0 6.9E-08 1.5E-12 104.2 24.0 186 191-392 104-303 (355)
122 PRK14469 ribosomal RNA large s 99.0 3E-08 6.5E-13 106.7 21.2 184 191-389 100-293 (343)
123 COG1856 Uncharacterized homolo 99.0 2.2E-08 4.8E-13 98.7 17.4 196 197-408 16-212 (275)
124 PRK14465 ribosomal RNA large s 99.0 7.7E-08 1.7E-12 103.0 23.0 179 191-386 104-294 (342)
125 PRK14464 ribosomal RNA large s 99.0 5.3E-08 1.1E-12 104.2 21.4 184 193-393 97-288 (344)
126 PRK14462 ribosomal RNA large s 99.0 1.1E-07 2.4E-12 102.2 24.0 187 191-392 109-308 (356)
127 COG1244 Predicted Fe-S oxidore 98.9 7.1E-08 1.5E-12 100.1 17.0 191 194-395 49-256 (358)
128 TIGR03821 AblA_like_1 lysine-2 98.9 2.6E-07 5.6E-12 98.6 21.9 183 194-402 98-288 (321)
129 PRK14454 ribosomal RNA large s 98.9 3.8E-07 8.2E-12 98.0 23.0 186 191-391 100-295 (342)
130 KOG2672 Lipoate synthase [Coen 98.8 5.1E-08 1.1E-12 98.8 12.5 179 195-386 114-295 (360)
131 COG0820 Predicted Fe-S-cluster 98.8 6.2E-07 1.3E-11 95.2 21.3 186 190-391 99-299 (349)
132 PF01938 TRAM: TRAM domain; I 98.7 5.7E-08 1.2E-12 78.2 9.1 61 421-482 1-61 (61)
133 TIGR03820 lys_2_3_AblA lysine- 98.7 1.5E-06 3.3E-11 95.1 22.0 183 189-394 105-295 (417)
134 PRK13762 tRNA-modifying enzyme 98.7 1.1E-06 2.4E-11 93.8 20.4 171 198-391 64-266 (322)
135 COG2516 Biotin synthase-relate 98.7 4.3E-07 9.3E-12 94.3 16.3 195 190-400 27-239 (339)
136 COG0731 Fe-S oxidoreductases [ 98.6 2.3E-06 5.1E-11 89.3 19.1 175 201-395 33-222 (296)
137 KOG2900 Biotin synthase [Coenz 98.4 8.1E-07 1.8E-11 89.1 7.2 181 199-395 91-278 (380)
138 TIGR03278 methan_mark_10 putat 98.3 5.3E-05 1.2E-09 83.1 21.0 167 204-388 37-209 (404)
139 COG0535 Predicted Fe-S oxidore 98.3 0.00015 3.3E-09 77.0 23.8 181 191-389 18-200 (347)
140 COG4277 Predicted DNA-binding 98.3 1.7E-05 3.7E-10 81.7 15.1 192 198-399 60-270 (404)
141 PRK13745 anaerobic sulfatase-m 98.3 0.0001 2.2E-09 81.4 21.8 181 191-387 12-206 (412)
142 COG1533 SplB DNA repair photol 98.3 4.3E-05 9.2E-10 80.7 17.8 186 194-387 31-224 (297)
143 PRK13758 anaerobic sulfatase-m 98.2 0.00022 4.8E-09 77.4 22.8 174 195-383 8-193 (370)
144 TIGR02494 PFLE_PFLC glycyl-rad 98.2 6.5E-05 1.4E-09 79.0 17.2 152 220-392 105-264 (295)
145 TIGR03365 Bsubt_queE 7-cyano-7 98.1 0.00021 4.6E-09 73.2 19.5 147 194-375 25-176 (238)
146 COG1509 KamA Lysine 2,3-aminom 98.1 0.00024 5.2E-09 75.5 19.0 184 189-394 108-299 (369)
147 COG0641 AslB Arylsulfatase reg 98.0 0.00032 7E-09 76.5 18.2 199 202-415 18-224 (378)
148 KOG2535 RNA polymerase II elon 98.0 0.00013 2.8E-09 76.4 14.3 188 219-413 148-362 (554)
149 COG1180 PflA Pyruvate-formate 98.0 0.00037 8E-09 72.4 17.8 173 193-386 36-215 (260)
150 cd02068 radical_SAM_B12_BD B12 97.8 9.3E-05 2E-09 68.1 9.4 90 76-169 6-114 (127)
151 COG1625 Fe-S oxidoreductase, r 97.6 0.002 4.3E-08 69.9 15.8 169 206-392 44-221 (414)
152 PF02310 B12-binding: B12 bind 97.5 0.00044 9.6E-09 62.5 8.9 87 73-162 15-121 (121)
153 PRK10076 pyruvate formate lyas 97.1 0.039 8.5E-07 55.7 17.7 153 219-389 17-172 (213)
154 TIGR03279 cyano_FeS_chp putati 97.1 0.013 2.9E-07 64.5 15.3 109 305-416 139-255 (433)
155 TIGR00640 acid_CoA_mut_C methy 96.9 0.0099 2.1E-07 55.5 11.0 102 59-164 3-122 (132)
156 COG1313 PflX Uncharacterized F 96.8 0.015 3.3E-07 60.4 12.6 176 200-396 126-306 (335)
157 cd02065 B12-binding_like B12 b 96.6 0.0039 8.4E-08 56.5 5.7 82 76-163 17-116 (125)
158 COG0602 NrdG Organic radical a 96.5 0.0048 1E-07 62.2 6.1 68 194-268 25-97 (212)
159 cd02067 B12-binding B12 bindin 96.4 0.014 3.1E-07 52.8 8.1 78 75-154 16-111 (119)
160 TIGR02826 RNR_activ_nrdG3 anae 96.3 0.0087 1.9E-07 56.9 6.6 68 194-268 17-86 (147)
161 PF13353 Fer4_12: 4Fe-4S singl 96.1 0.017 3.6E-07 53.4 7.3 69 197-269 10-82 (139)
162 PRK02261 methylaspartate mutas 95.9 0.11 2.3E-06 48.9 11.5 105 59-165 4-133 (137)
163 PF13394 Fer4_14: 4Fe-4S singl 95.7 0.031 6.6E-07 50.3 7.0 52 198-249 4-59 (119)
164 COG2108 Uncharacterized conser 95.7 0.17 3.7E-06 53.5 13.1 162 195-384 31-201 (353)
165 cd02072 Glm_B12_BD B12 binding 95.7 0.049 1.1E-06 50.6 8.2 85 76-164 17-125 (128)
166 cd03174 DRE_TIM_metallolyase D 95.5 0.67 1.5E-05 47.5 16.9 150 218-382 13-166 (265)
167 TIGR01501 MthylAspMutase methy 95.5 0.11 2.5E-06 48.6 9.8 88 75-164 18-130 (134)
168 COG5014 Predicted Fe-S oxidore 95.1 0.72 1.6E-05 44.8 13.9 155 199-375 48-213 (228)
169 COG2185 Sbm Methylmalonyl-CoA 94.7 0.34 7.4E-06 45.7 10.6 104 57-164 11-132 (143)
170 cd02071 MM_CoA_mut_B12_BD meth 94.4 0.24 5.1E-06 45.4 8.7 77 76-154 17-111 (122)
171 TIGR02491 NrdG anaerobic ribon 94.2 0.12 2.5E-06 49.4 6.5 67 199-269 22-93 (154)
172 PLN02746 hydroxymethylglutaryl 93.7 2.4 5.2E-05 46.0 16.1 145 218-381 62-216 (347)
173 PRK09426 methylmalonyl-CoA mut 92.6 1.1 2.3E-05 53.2 12.2 103 58-164 582-702 (714)
174 PRK05692 hydroxymethylglutaryl 92.0 4.6 9.9E-05 42.7 15.1 147 218-381 20-174 (287)
175 cd02070 corrinoid_protein_B12- 91.6 0.5 1.1E-05 47.1 7.0 72 75-150 99-189 (201)
176 KOG2876 Molybdenum cofactor bi 91.3 0.64 1.4E-05 48.0 7.3 185 195-400 14-205 (323)
177 PRK11121 nrdG anaerobic ribonu 90.6 1.3 2.8E-05 42.4 8.4 66 200-270 24-96 (154)
178 cd07948 DRE_TIM_HCS Saccharomy 90.6 12 0.00026 39.0 16.3 142 218-381 16-160 (262)
179 cd07938 DRE_TIM_HMGL 3-hydroxy 90.5 9.5 0.00021 40.0 15.6 148 218-381 14-168 (274)
180 cd07939 DRE_TIM_NifV Streptomy 88.6 15 0.00033 37.9 15.3 140 219-381 15-158 (259)
181 TIGR02370 pyl_corrinoid methyl 88.2 1.2 2.5E-05 44.4 6.4 71 74-148 100-189 (197)
182 PRK11858 aksA trans-homoaconit 85.8 26 0.00057 38.4 15.9 141 219-381 21-164 (378)
183 TIGR03217 4OH_2_O_val_ald 4-hy 85.7 37 0.0008 36.7 16.7 159 219-411 19-182 (333)
184 PRK14818 NADH dehydrogenase su 85.7 2.2 4.8E-05 41.5 6.5 74 59-137 31-111 (173)
185 cd07944 DRE_TIM_HOA_like 4-hyd 85.3 51 0.0011 34.4 17.5 140 219-381 15-157 (266)
186 cd02069 methionine_synthase_B1 85.2 2.1 4.5E-05 43.2 6.5 59 75-135 105-179 (213)
187 KOG2492 CDK5 activator-binding 84.8 0.9 2E-05 49.5 3.7 50 50-108 386-436 (552)
188 PRK14816 NADH dehydrogenase su 84.4 2.2 4.8E-05 41.9 6.0 74 60-138 42-123 (182)
189 PF00682 HMGL-like: HMGL-like 83.2 6.6 0.00014 39.8 9.2 144 220-381 10-156 (237)
190 TIGR01957 nuoB_fam NADH-quinon 82.9 2.7 5.8E-05 40.0 5.7 64 73-137 29-98 (145)
191 TIGR02660 nifV_homocitr homoci 82.8 35 0.00077 37.2 15.2 140 219-380 18-160 (365)
192 cd07940 DRE_TIM_IPMS 2-isoprop 82.7 42 0.0009 34.9 15.1 145 219-381 15-162 (268)
193 TIGR02090 LEU1_arch isopropylm 82.3 50 0.0011 36.1 16.1 142 218-381 16-160 (363)
194 COG3269 Predicted RNA-binding 81.7 10 0.00023 31.7 7.9 58 423-484 14-71 (73)
195 cd07941 DRE_TIM_LeuA3 Desulfob 81.2 63 0.0014 33.7 15.8 148 219-380 15-169 (273)
196 PRK00915 2-isopropylmalate syn 80.5 41 0.00089 38.6 15.2 147 218-381 20-168 (513)
197 PRK08195 4-hyroxy-2-oxovalerat 80.0 94 0.002 33.6 17.7 159 219-411 20-183 (337)
198 PRK14041 oxaloacetate decarbox 78.6 1E+02 0.0022 35.0 17.3 139 220-380 21-171 (467)
199 cd07937 DRE_TIM_PC_TC_5S Pyruv 77.7 96 0.0021 32.4 16.3 143 220-381 17-168 (275)
200 PRK06411 NADH dehydrogenase su 76.9 4.8 0.0001 39.7 5.4 64 73-137 47-115 (183)
201 cd07945 DRE_TIM_CMS Leptospira 76.9 43 0.00093 35.3 13.0 147 218-381 13-166 (280)
202 PRK14813 NADH dehydrogenase su 76.6 2 4.3E-05 42.5 2.7 71 61-136 30-107 (189)
203 PF08821 CGGC: CGGC domain; I 76.4 6.7 0.00015 35.4 5.8 62 59-131 39-105 (107)
204 PF04016 DUF364: Domain of unk 76.2 3.9 8.4E-05 38.8 4.5 55 94-152 61-116 (147)
205 PRK07535 methyltetrahydrofolat 75.8 32 0.00069 35.9 11.5 145 217-375 18-184 (261)
206 PRK14819 NADH dehydrogenase su 74.5 7.2 0.00016 40.3 6.1 74 59-137 31-112 (264)
207 PRK09389 (R)-citramalate synth 73.0 1.3E+02 0.0029 34.2 16.6 142 218-381 18-162 (488)
208 cd00423 Pterin_binding Pterin 72.8 12 0.00027 38.7 7.6 141 218-374 18-194 (258)
209 CHL00023 ndhK NADH dehydrogena 71.7 6.6 0.00014 39.8 5.0 75 60-137 33-112 (225)
210 TIGR00973 leuA_bact 2-isopropy 71.4 86 0.0019 35.8 14.6 147 218-381 17-165 (494)
211 PRK14815 NADH dehydrogenase su 70.7 9.5 0.00021 37.6 5.8 73 60-137 34-114 (183)
212 PRK12344 putative alpha-isopro 70.4 1.1E+02 0.0023 35.3 15.1 150 218-380 21-176 (524)
213 PRK14040 oxaloacetate decarbox 69.5 1.8E+02 0.0039 34.1 16.8 51 220-271 23-75 (593)
214 PRK09432 metF 5,10-methylenete 67.9 1.2E+02 0.0026 32.2 13.9 49 220-268 93-141 (296)
215 COG0685 MetF 5,10-methylenetet 67.5 98 0.0021 32.8 13.1 118 220-356 88-210 (291)
216 PRK13168 rumA 23S rRNA m(5)U19 67.1 34 0.00075 38.2 10.2 61 427-491 15-75 (443)
217 COG3260 Ni,Fe-hydrogenase III 66.8 7.9 0.00017 36.3 4.1 60 67-136 28-89 (148)
218 cd07943 DRE_TIM_HOA 4-hydroxy- 66.1 1.7E+02 0.0036 30.3 17.5 139 219-381 17-160 (263)
219 TIGR00977 LeuA_rel 2-isopropyl 63.2 2.7E+02 0.0059 32.1 16.5 151 218-382 17-174 (526)
220 TIGR01108 oadA oxaloacetate de 63.1 2.9E+02 0.0063 32.3 16.9 52 220-271 17-69 (582)
221 TIGR02082 metH 5-methyltetrahy 63.1 13 0.00028 46.7 6.3 60 75-136 749-824 (1178)
222 COG2265 TrmA SAM-dependent met 62.9 33 0.00072 38.5 8.9 58 426-487 3-60 (432)
223 PRK09282 pyruvate carboxylase 62.8 2.7E+02 0.0058 32.7 16.5 52 220-271 22-74 (592)
224 cd00739 DHPS DHPS subgroup of 62.6 1.6E+02 0.0035 30.6 13.4 63 219-286 19-87 (257)
225 PLN03228 methylthioalkylmalate 62.5 1.1E+02 0.0023 35.2 13.0 149 218-381 100-258 (503)
226 PRK14814 NADH dehydrogenase su 62.2 13 0.00027 36.9 4.8 55 82-137 59-114 (186)
227 TIGR01496 DHPS dihydropteroate 61.8 2E+02 0.0043 29.9 13.9 64 218-286 17-86 (257)
228 PRK11613 folP dihydropteroate 61.4 2.2E+02 0.0048 30.1 14.3 138 219-374 33-207 (282)
229 PF06180 CbiK: Cobalt chelatas 60.8 77 0.0017 33.1 10.6 150 222-394 56-215 (262)
230 COG0159 TrpA Tryptophan syntha 60.1 2.3E+02 0.0049 29.8 14.8 26 320-345 69-94 (265)
231 COG3473 Maleate cis-trans isom 58.2 18 0.00039 36.5 5.1 32 58-92 118-149 (238)
232 KOG1160 Fe-S oxidoreductase [E 57.9 1.9E+02 0.004 32.6 13.0 206 197-425 288-526 (601)
233 PLN02321 2-isopropylmalate syn 56.7 1.1E+02 0.0023 36.2 11.9 146 218-381 102-259 (632)
234 PRK09490 metH B12-dependent me 56.4 19 0.00042 45.4 6.1 60 75-136 768-843 (1229)
235 cd02072 Glm_B12_BD B12 binding 56.2 73 0.0016 29.7 8.5 57 327-392 62-119 (128)
236 cd03315 MLE_like Muconate lact 56.1 1.1E+02 0.0024 31.5 10.9 92 222-324 85-176 (265)
237 TIGR02990 ectoine_eutA ectoine 54.1 48 0.001 34.1 7.7 94 58-163 120-222 (239)
238 PRK14820 NADH dehydrogenase su 53.8 34 0.00074 33.7 6.2 66 65-137 41-114 (180)
239 cd07942 DRE_TIM_LeuA Mycobacte 53.3 2.9E+02 0.0063 29.2 13.6 153 208-374 4-168 (284)
240 PF08902 DUF1848: Domain of un 53.1 1.6E+02 0.0034 31.0 11.2 51 218-270 53-109 (266)
241 TIGR00642 mmCoA_mut_beta methy 52.6 86 0.0019 36.9 10.3 102 58-162 494-613 (619)
242 TIGR00612 ispG_gcpE 1-hydroxy- 52.2 2.5E+02 0.0054 30.6 12.7 135 220-374 30-190 (346)
243 TIGR01501 MthylAspMutase methy 50.3 99 0.0022 29.0 8.5 58 326-392 63-121 (134)
244 PRK00366 ispG 4-hydroxy-3-meth 49.6 2.2E+02 0.0048 31.1 11.9 135 220-374 38-199 (360)
245 cd04731 HisF The cyclase subun 49.3 2.4E+02 0.0051 28.6 12.0 136 224-386 27-173 (243)
246 COG1618 Predicted nucleotide k 49.2 1.3E+02 0.0028 29.5 9.1 75 94-168 99-177 (179)
247 TIGR03572 WbuZ glycosyl amidat 48.6 2.5E+02 0.0055 28.1 12.0 132 226-386 32-177 (232)
248 PRK14817 NADH dehydrogenase su 47.9 29 0.00062 34.3 4.6 62 73-137 47-116 (181)
249 PRK13292 trifunctional NADH de 47.4 28 0.00061 41.9 5.4 74 60-138 23-104 (788)
250 COG0821 gcpE 1-hydroxy-2-methy 47.3 3.6E+02 0.0078 29.3 12.9 139 219-374 31-192 (361)
251 cd00537 MTHFR Methylenetetrahy 46.9 1.1E+02 0.0024 31.7 9.3 49 220-268 69-123 (274)
252 COG1964 Predicted Fe-S oxidore 46.7 3.9E+02 0.0084 30.2 13.5 156 209-386 78-242 (475)
253 PF04481 DUF561: Protein of un 46.6 3.4E+02 0.0074 27.8 14.7 130 219-381 22-151 (242)
254 PF13552 DUF4127: Protein of u 46.0 58 0.0013 37.2 7.5 57 75-131 280-351 (497)
255 COG0119 LeuA Isopropylmalate/h 45.9 3.6E+02 0.0079 30.1 13.4 145 218-381 18-165 (409)
256 cd01301 rDP_like renal dipepti 45.6 2.8E+02 0.006 29.7 12.1 133 227-382 116-262 (309)
257 PRK15452 putative protease; Pr 45.4 1E+02 0.0022 34.8 9.1 74 305-384 24-98 (443)
258 PRK02261 methylaspartate mutas 45.0 1.4E+02 0.0031 27.8 8.8 56 327-392 66-123 (137)
259 PF00834 Ribul_P_3_epim: Ribul 44.8 3.3E+02 0.007 27.3 11.8 152 221-416 9-162 (201)
260 PRK14024 phosphoribosyl isomer 43.9 3.7E+02 0.008 27.4 13.7 130 225-384 33-168 (241)
261 TIGR01227 hutG formimidoylglut 43.8 2.4E+02 0.0052 29.9 11.4 157 223-389 97-289 (307)
262 TIGR00696 wecB_tagA_cpsF bacte 43.8 1.1E+02 0.0024 29.9 8.1 52 328-383 57-108 (177)
263 PF05818 TraT: Enterobacterial 43.4 41 0.00089 34.1 5.1 56 44-101 7-65 (215)
264 COG2014 Uncharacterized conser 43.4 39 0.00085 34.2 4.8 58 94-155 163-221 (250)
265 COG5012 Predicted cobalamin bi 43.2 43 0.00093 34.1 5.2 49 76-126 122-184 (227)
266 TIGR03278 methan_mark_10 putat 41.7 60 0.0013 36.1 6.5 45 258-302 55-101 (404)
267 PRK14042 pyruvate carboxylase 41.2 6.6E+02 0.014 29.6 16.4 45 326-374 150-195 (596)
268 PRK12330 oxaloacetate decarbox 40.4 6.2E+02 0.014 29.1 15.8 52 220-271 23-75 (499)
269 TIGR01754 flav_RNR ribonucleot 40.3 76 0.0016 29.3 6.1 62 75-136 18-92 (140)
270 TIGR00676 fadh2 5,10-methylene 40.2 2.5E+02 0.0055 29.2 10.7 127 220-372 69-206 (272)
271 PLN02495 oxidoreductase, actin 39.6 87 0.0019 34.7 7.3 58 327-387 95-152 (385)
272 PF00290 Trp_syntA: Tryptophan 39.3 3.9E+02 0.0084 28.0 11.7 32 348-382 116-147 (259)
273 PRK12331 oxaloacetate decarbox 39.3 6.1E+02 0.013 28.7 17.7 140 220-381 22-173 (448)
274 PRK13585 1-(5-phosphoribosyl)- 39.3 4E+02 0.0086 26.8 11.8 133 226-385 34-172 (241)
275 cd03409 Chelatase_Class_II Cla 38.4 1.6E+02 0.0034 25.1 7.5 60 329-392 16-75 (101)
276 PF00809 Pterin_bind: Pterin b 38.2 2E+02 0.0044 28.7 9.3 141 220-374 15-191 (210)
277 COG0036 Rpe Pentose-5-phosphat 38.2 4.6E+02 0.0099 26.8 11.8 83 227-324 74-158 (220)
278 PF10649 DUF2478: Protein of u 38.1 54 0.0012 31.7 4.8 61 64-130 68-128 (159)
279 PRK12330 oxaloacetate decarbox 37.8 2.4E+02 0.0053 32.3 10.7 176 221-428 152-338 (499)
280 TIGR00262 trpA tryptophan synt 37.2 3.3E+02 0.0072 28.2 10.9 23 357-379 122-144 (256)
281 COG0826 Collagenase and relate 36.9 1.6E+02 0.0034 32.1 8.7 73 305-382 27-99 (347)
282 KOG3799 Rab3 effector RIM1 and 36.7 13 0.00029 34.6 0.4 17 197-213 75-91 (169)
283 COG1832 Predicted CoA-binding 36.7 1.3E+02 0.0028 28.5 6.8 65 59-131 17-103 (140)
284 PRK10812 putative DNAse; Provi 36.6 1.5E+02 0.0032 30.9 8.2 124 222-376 21-147 (265)
285 PRK08091 ribulose-phosphate 3- 36.2 4.9E+02 0.011 26.7 16.8 152 220-415 21-174 (228)
286 cd05014 SIS_Kpsf KpsF-like pro 36.1 1.4E+02 0.003 26.6 7.1 67 63-132 3-82 (128)
287 cd00452 KDPG_aldolase KDPG and 35.8 4.2E+02 0.0092 25.8 13.9 116 218-383 10-125 (190)
288 PRK00923 sirohydrochlorin coba 34.4 1.6E+02 0.0034 26.7 7.1 60 329-393 17-77 (126)
289 cd03328 MR_like_3 Mandelate ra 34.3 3.3E+02 0.0071 29.5 10.8 95 221-326 137-231 (352)
290 PRK13111 trpA tryptophan synth 34.3 5.5E+02 0.012 26.7 12.4 23 320-342 64-86 (258)
291 PRK09271 flavodoxin; Provision 33.9 1.1E+02 0.0024 29.0 6.3 60 75-134 18-94 (160)
292 PLN02540 methylenetetrahydrofo 33.9 4.1E+02 0.0088 31.1 11.7 52 219-270 68-125 (565)
293 PRK12581 oxaloacetate decarbox 33.7 7.7E+02 0.017 28.1 16.9 50 221-271 32-83 (468)
294 COG2355 Zn-dependent dipeptida 33.5 5E+02 0.011 28.0 11.6 140 220-381 104-258 (313)
295 TIGR00284 dihydropteroate synt 33.2 3.6E+02 0.0079 30.9 11.1 126 224-373 165-305 (499)
296 PF03808 Glyco_tran_WecB: Glyc 32.9 1.5E+02 0.0032 28.7 7.0 52 329-383 58-109 (172)
297 TIGR00640 acid_CoA_mut_C methy 32.5 2.7E+02 0.0057 25.9 8.4 50 328-393 66-117 (132)
298 COG1941 FrhG Coenzyme F420-red 32.3 88 0.0019 32.3 5.4 67 66-137 15-90 (247)
299 cd03412 CbiK_N Anaerobic cobal 32.1 2.1E+02 0.0045 26.3 7.6 61 331-391 18-85 (127)
300 cd06556 ICL_KPHMT Members of t 32.0 1.3E+02 0.0028 31.0 6.7 54 327-381 55-108 (240)
301 TIGR00479 rumA 23S rRNA (uraci 31.9 1.7E+02 0.0036 32.5 8.2 46 443-491 8-53 (431)
302 TIGR00007 phosphoribosylformim 31.6 5.3E+02 0.012 25.7 11.6 135 225-386 29-169 (230)
303 cd04723 HisA_HisF Phosphoribos 31.5 3.3E+02 0.0073 27.6 9.7 131 224-385 35-168 (233)
304 PLN02615 arginase 31.5 7E+02 0.015 27.0 12.7 155 223-389 132-315 (338)
305 PF02219 MTHFR: Methylenetetra 31.5 4.6E+02 0.01 27.4 11.0 114 220-353 81-208 (287)
306 cd05013 SIS_RpiR RpiR-like pro 31.2 2.1E+02 0.0047 25.2 7.5 68 63-133 16-96 (139)
307 TIGR00677 fadh2_euk methylenet 31.2 4.3E+02 0.0094 27.8 10.7 50 220-269 70-125 (281)
308 PF06283 ThuA: Trehalose utili 30.7 1.1E+02 0.0024 30.4 6.0 55 74-129 20-85 (217)
309 TIGR00736 nifR3_rel_arch TIM-b 29.9 4.1E+02 0.0089 27.2 10.0 135 229-385 34-171 (231)
310 PF13714 PEP_mutase: Phosphoen 29.7 4.2E+02 0.0091 27.2 10.1 83 327-415 52-134 (238)
311 cd01836 FeeA_FeeB_like SGNH_hy 29.6 2E+02 0.0043 27.4 7.4 67 60-134 40-115 (191)
312 PRK05474 xylose isomerase; Pro 29.5 3.4E+02 0.0075 30.5 9.8 143 233-377 88-258 (437)
313 PRK13774 formimidoylglutamase; 29.1 4.4E+02 0.0095 28.1 10.5 157 223-389 106-293 (311)
314 cd03319 L-Ala-DL-Glu_epimerase 28.9 7E+02 0.015 26.2 12.9 92 222-325 134-225 (316)
315 TIGR03127 RuMP_HxlB 6-phospho 28.8 2.6E+02 0.0056 26.8 8.0 73 59-136 31-111 (179)
316 COG5561 Predicted metal-bindin 28.3 2.9E+02 0.0063 24.3 7.0 65 58-132 28-97 (101)
317 cd03316 MR_like Mandelate race 28.1 5.7E+02 0.012 27.4 11.3 96 222-323 139-235 (357)
318 cd03413 CbiK_C Anaerobic cobal 28.0 4.2E+02 0.0092 23.4 9.4 60 329-394 15-74 (103)
319 cd03329 MR_like_4 Mandelate ra 27.9 4.6E+02 0.0099 28.5 10.6 95 221-324 142-236 (368)
320 COG4956 Integral membrane prot 27.6 2E+02 0.0043 30.9 7.2 63 410-473 280-342 (356)
321 PHA01735 hypothetical protein 27.6 74 0.0016 26.4 3.2 42 359-406 30-75 (76)
322 COG3925 N-terminal domain of t 27.5 83 0.0018 27.8 3.7 48 75-133 20-67 (103)
323 TIGR03555 F420_mer 5,10-methyl 27.4 5.9E+02 0.013 27.0 11.2 105 221-342 9-122 (325)
324 PRK14017 galactonate dehydrata 27.1 7.7E+02 0.017 26.9 12.2 100 222-325 124-225 (382)
325 cd03321 mandelate_racemase Man 26.8 3.5E+02 0.0077 29.2 9.4 137 222-377 141-290 (355)
326 COG1152 CdhA CO dehydrogenase/ 26.6 91 0.002 36.1 4.8 55 83-138 488-542 (772)
327 PRK09282 pyruvate carboxylase 26.4 8.6E+02 0.019 28.6 13.0 124 221-375 151-274 (592)
328 PRK12331 oxaloacetate decarbox 26.0 6.7E+02 0.015 28.3 11.6 101 221-342 151-252 (448)
329 cd03416 CbiX_SirB_N Sirohydroc 25.7 2.4E+02 0.0053 24.2 6.6 59 330-392 16-74 (101)
330 PRK13586 1-(5-phosphoribosyl)- 25.7 7.2E+02 0.016 25.3 10.9 134 225-391 31-174 (232)
331 PF03698 UPF0180: Uncharacteri 25.5 71 0.0015 27.4 2.9 27 75-101 10-41 (80)
332 cd06533 Glyco_transf_WecG_TagA 25.5 2E+02 0.0043 27.7 6.5 53 328-383 55-107 (171)
333 TIGR01230 agmatinase agmatinas 25.4 7.8E+02 0.017 25.6 12.8 151 224-389 80-256 (275)
334 PF06968 BATS: Biotin and Thia 24.9 85 0.0019 27.2 3.5 24 381-404 2-25 (93)
335 TIGR00035 asp_race aspartate r 24.8 59 0.0013 32.9 2.8 73 57-134 116-196 (229)
336 COG2875 CobM Precorrin-4 methy 24.7 5.6E+02 0.012 26.6 9.5 44 219-267 57-100 (254)
337 PRK10425 DNase TatD; Provision 24.6 6.8E+02 0.015 25.9 10.7 123 221-374 15-142 (258)
338 PRK02714 O-succinylbenzoate sy 24.6 6.1E+02 0.013 27.0 10.7 93 224-326 120-215 (320)
339 PRK12336 translation initiatio 24.3 3.5E+02 0.0076 27.1 8.1 54 424-481 147-200 (201)
340 PF03016 Exostosin: Exostosin 24.2 85 0.0018 32.4 3.9 34 68-102 32-66 (302)
341 smart00876 BATS Biotin and Thi 23.8 75 0.0016 27.6 2.9 22 381-402 2-24 (94)
342 PF01261 AP_endonuc_2: Xylose 23.7 6.3E+02 0.014 23.9 10.8 54 329-384 26-93 (213)
343 cd00954 NAL N-Acetylneuraminic 23.7 5.7E+02 0.012 26.7 10.0 53 327-382 51-103 (288)
344 cd01822 Lysophospholipase_L1_l 23.6 3.8E+02 0.0082 24.8 8.0 66 60-133 36-109 (177)
345 cd00635 PLPDE_III_YBL036c_like 23.4 3.7E+02 0.0081 26.8 8.3 63 306-374 117-184 (222)
346 cd00950 DHDPS Dihydrodipicolin 23.2 4.5E+02 0.0098 27.2 9.2 53 327-382 50-102 (284)
347 PRK02271 methylenetetrahydrome 23.1 8.7E+02 0.019 25.7 11.5 105 221-342 11-124 (325)
348 cd05005 SIS_PHI Hexulose-6-pho 22.9 3.4E+02 0.0075 25.9 7.7 75 59-138 34-116 (179)
349 cd03326 MR_like_1 Mandelate ra 22.8 9E+02 0.02 26.6 11.8 141 221-377 159-313 (385)
350 PRK03739 2-isopropylmalate syn 22.7 1E+03 0.022 27.7 12.5 127 218-359 46-177 (552)
351 PRK03170 dihydrodipicolinate s 22.7 4.2E+02 0.0092 27.6 8.9 53 327-382 51-103 (292)
352 PRK08883 ribulose-phosphate 3- 22.5 6.5E+02 0.014 25.4 9.8 136 220-395 8-146 (220)
353 COG2513 PrpB PEP phosphonomuta 22.5 6.1E+02 0.013 27.0 9.7 87 319-413 49-145 (289)
354 PRK12581 oxaloacetate decarbox 22.5 7E+02 0.015 28.4 10.9 123 221-374 160-282 (468)
355 COG0113 HemB Delta-aminolevuli 22.3 6.3E+02 0.014 27.2 9.7 76 192-271 33-115 (330)
356 cd04732 HisA HisA. Phosphorib 22.3 7.7E+02 0.017 24.4 11.3 132 225-384 30-168 (234)
357 PF05853 DUF849: Prokaryotic p 22.2 6.2E+02 0.014 26.4 9.9 138 218-373 20-161 (272)
358 TIGR00695 uxuA mannonate dehyd 22.1 1.8E+02 0.0038 32.4 5.9 148 222-375 41-204 (394)
359 COG1679 Predicted aconitase [G 21.7 1.6E+02 0.0035 32.4 5.3 70 60-136 289-359 (403)
360 cd00945 Aldolase_Class_I Class 21.6 6.9E+02 0.015 23.6 14.6 134 222-382 11-149 (201)
361 PRK02506 dihydroorotate dehydr 21.5 7.6E+02 0.016 26.3 10.6 57 327-387 74-131 (310)
362 PLN02746 hydroxymethylglutaryl 21.5 1.1E+03 0.023 25.8 13.3 63 192-271 178-240 (347)
363 cd03414 CbiX_SirB_C Sirohydroc 21.4 2.8E+02 0.0061 24.4 6.3 59 329-391 16-74 (117)
364 cd01096 Alkanal_monooxygenase 21.2 8.9E+02 0.019 25.5 11.1 109 222-342 20-138 (315)
365 PRK05799 coproporphyrinogen II 21.1 7.4E+02 0.016 26.8 10.7 32 359-390 132-163 (374)
366 cd02803 OYE_like_FMN_family Ol 21.0 6.4E+02 0.014 26.6 9.9 54 332-385 194-251 (327)
367 PRK00694 4-hydroxy-3-methylbut 21.0 8.4E+02 0.018 28.6 11.0 133 220-373 41-225 (606)
368 cd02801 DUS_like_FMN Dihydrour 21.0 6.8E+02 0.015 24.7 9.6 54 328-384 107-160 (231)
369 PRK11104 hemG protoporphyrinog 21.0 2.8E+02 0.0061 26.9 6.6 63 71-134 13-87 (177)
370 PF04551 GcpE: GcpE protein; 20.9 2.9E+02 0.0064 30.2 7.1 133 220-373 27-198 (359)
371 TIGR03820 lys_2_3_AblA lysine- 20.8 1.2E+03 0.026 26.1 13.1 104 231-352 179-283 (417)
372 cd03325 D-galactonate_dehydrat 20.8 1E+03 0.022 25.5 11.6 142 222-377 123-280 (352)
373 PF00490 ALAD: Delta-aminolevu 20.7 2E+02 0.0044 31.0 5.8 58 213-271 47-111 (324)
374 cd06808 PLPDE_III Type III Pyr 20.6 7.6E+02 0.016 23.7 13.2 45 307-357 108-154 (211)
375 COG0648 Nfo Endonuclease IV [D 20.4 9.6E+02 0.021 25.4 10.7 128 218-385 81-214 (280)
376 COG4252 Predicted transmembran 20.4 4.3E+02 0.0094 29.5 8.5 57 314-374 66-124 (400)
377 TIGR00542 hxl6Piso_put hexulos 20.3 6.9E+02 0.015 25.6 9.8 72 305-381 30-113 (279)
378 TIGR03842 F420_CPS_4043 F420-d 20.3 9.9E+02 0.021 25.4 11.3 106 221-343 10-123 (330)
379 cd04823 ALAD_PBGS_aspartate_ri 20.3 3.9E+02 0.0085 28.8 7.8 59 211-271 42-108 (320)
380 PRK09283 delta-aminolevulinic 20.3 3.8E+02 0.0083 28.9 7.7 56 212-271 48-111 (323)
381 PRK13384 delta-aminolevulinic 20.0 4.1E+02 0.0089 28.6 7.9 57 211-271 49-113 (322)
No 1
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.2e-98 Score=770.00 Aligned_cols=482 Identities=64% Similarity=1.039 Sum_probs=456.6
Q ss_pred CCchhhhhhcCCCCCCCCCCCCCCCcceeccccCCCCCCc-cCCcccccCCCCCCCCCCceEEEEecCcccChhhHHHHH
Q 006836 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRL-HDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMA 79 (629)
Q Consensus 1 ~~~~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~i~TlGC~~N~~dse~m~ 79 (629)
||||||++ +++|++|++|++.+.+ |.||.+|+...+ .+.+.+ ..+.+|.|||+++|||+||||++|++|||||+
T Consensus 1 ~ddiedl~---s~~d~kp~~r~~~~k~-v~pk~~kr~~~k~~q~ee~-~~ps~s~ipgtqki~iktwgcshnnsdseyma 75 (547)
T KOG4355|consen 1 MDDIEDLL---SGGDAKPGFRLPLNKV-VNPKTNKRISSKPDQIEES-NRPSSSKIPGTQKIYIKTWGCSHNNSDSEYMA 75 (547)
T ss_pred CccHHHHh---hCCCCCCccccccccc-cccccccccccCchhhhhc-CCCccccCCCccEEEEEeecccCCCchhHHHh
Confidence 79999999 6789999999997665 889887654322 222222 23558999999999999999999999999999
Q ss_pred HHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCCChhhhcccccEEEcCCCHHHHH
Q 006836 80 GQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 159 (629)
Q Consensus 80 ~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~~~e~~~~~~d~VvG~~e~~~l~ 159 (629)
|+|.+.||.++. +++||+|++|||||.+|++..+++.|.+.++.++++|++||.||..|++..+.+.+|||.+++++++
T Consensus 76 gqlaaygy~lte-~eeadlwllnsctvknpsed~frn~i~~g~~~~k~~viagcvpqg~p~~dyl~glsvigvqqidrvv 154 (547)
T KOG4355|consen 76 GQLAAYGYALTE-PEEADLWLLNSCTVKNPSEDAFRNLITRGRSGKKPLVIAGCVPQGSPDLDYLEGLSVIGVQQIDRVV 154 (547)
T ss_pred hhHHhhhhccCC-cccccEEEecccccCCchHHHHHHHHHhhhcCCCceEEEecCCCCCcchhhhcCceEeehhhhhHHH
Confidence 999999999999 9999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEeecccCCCCCCCCcccCCceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCc
Q 006836 160 EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239 (629)
Q Consensus 160 ell~~~~~g~~~~~~~~~~~p~~~lp~~r~~~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~Gvk 239 (629)
|++++.++|+.++++.....+++++|+.|+++++.+|.|+.||-+.|+||...++||..-|+|++++++.++...+.|+.
T Consensus 155 evveetlkghsvrll~rr~~galdlpkvrknplieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~ 234 (547)
T KOG4355|consen 155 EVVEETLKGHSVRLLTRRTLGALDLPKVRKNPLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVC 234 (547)
T ss_pred HHHHHHhccceEeeeecccccccCchhhccCCceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcE
Confidence 99999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHH
Q 006836 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 319 (629)
Q Consensus 240 eI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~v 319 (629)
+||+++.|+++||+|++.+++.||.++.+.+| ..+++|+++++|+++.+++++++..+++++++.++|+|+|||||.+
T Consensus 235 eIwltsedTgaygrdig~slp~ll~klv~~iP--e~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsv 312 (547)
T KOG4355|consen 235 EIWLTSEDTGAYGRDIGKSLPKLLWKLVEVIP--ESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSV 312 (547)
T ss_pred EEEecccccchhhhhhhhhhHHHHHHHHHhcc--hhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhH
Confidence 99999999999999999999999999999998 7799999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCC
Q 006836 320 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399 (629)
Q Consensus 320 Lk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~ 399 (629)
|..|+|.|...++..+++.+++.+||+.|.||||+||||||++||++|++++++++|..++|++|+|+||||+++|+++|
T Consensus 313 l~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkki~ 392 (547)
T KOG4355|consen 313 LTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKKIP 392 (547)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCcEEEEEEEEEecCCceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEE
Q 006836 400 SAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 479 (629)
Q Consensus 400 ~~~~~~R~~~L~~l~~~~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g 479 (629)
..++++|.+.|.+++++|..|..++|...+|||++++.|+.+++||++.|.+|+++.+...+|+++.|+|+++++|+|+|
T Consensus 393 a~~vkkRTk~ls~lF~sy~pYtd~ige~~rVlVTEva~Dklh~VgHnksYeQVLvp~~~~~mGt~vevrItsvgkfsm~g 472 (547)
T KOG4355|consen 393 AVEVKKRTKALSELFRSYTPYTDEIGELHRVLVTEVAADKLHYVGHNKSYEQVLVPLEYCKMGTWVEVRITSVGKFSMIG 472 (547)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccEEEEEEEEeeccceeeeccccceeEEEeecchhhccceEEEEEEeeeeeeeec
Confidence 99999999999999999999999999999999999998888999999999999999888899999999999999999999
Q ss_pred EEEeccccccc
Q 006836 480 EVIKILNQVDD 490 (629)
Q Consensus 480 ~~v~~~~~~~~ 490 (629)
++++..+.+..
T Consensus 473 ep~s~~~d~~p 483 (547)
T KOG4355|consen 473 EPASDQEDQTP 483 (547)
T ss_pred cccchhhhcCc
Confidence 99987666554
No 2
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-91 Score=755.15 Aligned_cols=419 Identities=36% Similarity=0.623 Sum_probs=374.6
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCc-eeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEECcc
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCV 134 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~-~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VVVgGc~ 134 (629)
|+||||+||||+||++|||.|++.|.+.|| +.++++++||+++||||+|+..+++++++.|+++++.+ ++|+|+||+
T Consensus 2 ~~kv~i~T~GC~~N~~DSe~m~~~L~~~G~~~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~~iiVtGC~ 81 (437)
T COG0621 2 MKKVYIETLGCQMNLYDSERMAGLLEAAGYEELVEDPEEADVVIINTCAVREKAEQKVRSAIGELKKLKPDAKIIVTGCL 81 (437)
T ss_pred CceEEEEecCCCccHHHHHHHHHHHHHcCCccccCCcccCCEEEEecCeeeehHHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 789999999999999999999999999999 69999999999999999999999999999999998776 579999999
Q ss_pred cCCChh-hhccc-ccEEEcCCCHHHHHHHHHHHhcCCceE--eecccCCCC-CCCCcccCCceEEEEEeCCCCCCCCCCC
Q 006836 135 PQGSRD-LKELE-GVSIVGVQQIDRVVEVVEETLKGHEVR--LLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYC 209 (629)
Q Consensus 135 a~~~~e-~~~~~-~d~VvG~~e~~~l~ell~~~~~g~~~~--~~~~~~~p~-~~lp~~r~~~~~a~V~isrGCp~~CsFC 209 (629)
||..++ +..+| +|.|+|++++++++++|++...+.... ..+..+... ..+|..+.....|||+|+.||+++||||
T Consensus 82 aq~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~v~I~eGCn~~CtfC 161 (437)
T COG0621 82 AQAEEEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPPRREGGVRAFVKIQEGCNKFCTFC 161 (437)
T ss_pred cccCHHHHhhCCCceEEECCccHHHHHHHHHHHhhcccccccccccccccccccCCCCcCCCeEEEEEhhcCcCCCCCee
Confidence 999966 45666 578999999999999999886543322 111111111 1223335677899999999999999999
Q ss_pred ccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHHHHhCCCCCCceEEEeecCCc
Q 006836 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (629)
Q Consensus 210 ~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~---~~l~eLL~~L~~~i~~~~~~~iri~~~~p~ 286 (629)
++|++||+.||||+++|++|++.|++.|++||+|+|+|+++||.|.+ .+|++||+.|.+ ++ |+.|+|++|++|.
T Consensus 162 iiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~-I~--G~~riR~~~~~P~ 238 (437)
T COG0621 162 IIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK-IP--GIERIRFGSSHPL 238 (437)
T ss_pred eeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-CC--CceEEEEecCCch
Confidence 99999999999999999999999999999999999999999999985 789999999987 76 8999999999998
Q ss_pred chhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHH
Q 006836 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366 (629)
Q Consensus 287 ~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~e 366 (629)
.+++.+ +..+...+++|+|||||+|||||+|||+|+|+||.++|++.++++|+++|++.++|||||||||||+|||++
T Consensus 239 ~~~d~l--I~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~ 316 (437)
T COG0621 239 EFTDDL--IEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEE 316 (437)
T ss_pred hcCHHH--HHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHH
Confidence 888776 444445589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEE-ecCCceE
Q 006836 367 TVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI-AADGIHL 442 (629)
Q Consensus 367 Tl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~-~~~~~~~ 442 (629)
|++|+++.+|+.+|+|+|||+||||++.|+ |+|++++++|+++|+++++. .+.+++++|++++||||+. ++++ .+
T Consensus 317 tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~~~~~vG~~~~VLVe~~~~~~~-~~ 395 (437)
T COG0621 317 TLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEFNQKLVGKTLEVLVEEGGSKKG-EL 395 (437)
T ss_pred HHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccCcCC-ce
Confidence 999999999999999999999999999987 99999999999999999985 5788999999999999963 3344 68
Q ss_pred EEEecCCeEEEECCCCCC-CCCEEEEEEEEEeeceEEEEEE
Q 006836 443 VGHTKGYVQVLVPSTGNM-LGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 443 ~Grt~~y~~V~v~~~~~~-~G~~v~V~I~~~~~~~l~g~~v 482 (629)
.|||.+|.+|.+.+.... +|++++|+|+++..++|.|+++
T Consensus 396 ~Grt~~~~~v~~~~~~~~~~G~~v~VkIt~~~~~~L~g~~v 436 (437)
T COG0621 396 IGRTENYRPVVFGGVYTEDIGEFVEVKITEADEYSLIGEVV 436 (437)
T ss_pred EEEcCCCCEEEecCcccCCCCCEEEEEEEecCCCceEEEec
Confidence 899999999999864233 8999999999999999999986
No 3
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.8e-80 Score=682.83 Aligned_cols=424 Identities=27% Similarity=0.455 Sum_probs=363.6
Q ss_pred CCCceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHH---HhhCCC--CEEE
Q 006836 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK---CKSAKK--PLVV 130 (629)
Q Consensus 56 ~~~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~---~k~~~~--~VVV 130 (629)
|++++|||+||||++|++|||.|++.|.+.||++++++++||+|+||||+|+++|++++++.++. +++.++ +|||
T Consensus 4 ~~~~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~~~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k~~~~~~~ivv 83 (445)
T PRK14340 4 RMGRKFYIHTFGCQMNQADSEIITALLQDEGYVPAASEEDADIVLLNTCAVRENAVERIGHYLQHLKGAKRRRKGLLVGV 83 (445)
T ss_pred CCCcEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeccHHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 34468999999999999999999999999999999999999999999999999999999998764 445554 5999
Q ss_pred ECcccCCChh-hh-ccc-ccEEEcCCCHHHHHHHHHHHhcCCceEeecccCCCCC-CCCcccCCceEEEEEeCCCCCCCC
Q 006836 131 AGCVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGAC 206 (629)
Q Consensus 131 gGc~a~~~~e-~~-~~~-~d~VvG~~e~~~l~ell~~~~~g~~~~~~~~~~~p~~-~lp~~r~~~~~a~V~isrGCp~~C 206 (629)
||||||.+++ +. .++ +|.|+|++++..|++++.....+.....++..+.+.+ .+|..+...+.++|+++||||++|
T Consensus 84 ~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~isrGC~~~C 163 (445)
T PRK14340 84 LGCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADAREGARPAALDFNQSETYAGIEPVRSGSISAFVPVMRGCNNMC 163 (445)
T ss_pred eCcccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccCCCcEEEEEeccCCCCCC
Confidence 9999999986 43 455 5789999999999999987655532222221111211 122223345679999999999999
Q ss_pred CCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-CCCHHHHHHHHHHhCCCCCCceEEEeecCC
Q 006836 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285 (629)
Q Consensus 207 sFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~-~~~l~eLL~~L~~~i~~~~~~~iri~~~~p 285 (629)
+||++|..+|++|+||+++|++|++.+++.|+++|+|+|+|++.|+.+. ..+|.+||+.+.+. . +..++|+++.+|
T Consensus 164 sFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~-~--~~~rir~~~~~p 240 (445)
T PRK14340 164 AFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRA-A--PEMRIRFTTSHP 240 (445)
T ss_pred CCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhc-C--CCcEEEEccCCh
Confidence 9999999999999999999999999999999999999999999998764 35689999998753 3 456999999999
Q ss_pred cchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHH
Q 006836 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 365 (629)
Q Consensus 286 ~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~ 365 (629)
..+++.+ +..+.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++++||+.+.+|||+||||||++||+
T Consensus 241 ~~l~~el--l~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~ 318 (445)
T PRK14340 241 KDISESL--VRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHR 318 (445)
T ss_pred hhcCHHH--HHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHH
Confidence 8887655 33344445679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEeceeCCCCcccc-CC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecCC-c
Q 006836 366 QTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADG-I 440 (629)
Q Consensus 366 eTl~fl~~l~~d~v~i~~ysP~PGTpa~~-~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~-~ 440 (629)
+|++|+++++++.+++|+|+|+||||+++ |+ ++|++++++|.++|.+++++ .+.+++++|++++||||+.++++ +
T Consensus 319 ~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~l~~~~~~~~~~~~vG~~~~vlve~~~~~~~~ 398 (445)
T PRK14340 319 ATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEIIDLQNGISAELFQRAVGSVVEVLAESESRRSSE 398 (445)
T ss_pred HHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCC
Confidence 99999999999999999999999999995 87 89999999999999999986 56889999999999999754332 3
Q ss_pred eEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEec
Q 006836 441 HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 484 (629)
Q Consensus 441 ~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~ 484 (629)
.++|||.+|.+|+++++...+|++++|+|+++..++|.|+++..
T Consensus 399 ~~~grt~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~ 442 (445)
T PRK14340 399 QLMGRTDGNRVVVFDRGGFQPGDLVRVRITGSTSATLSGEPAGN 442 (445)
T ss_pred eEEEECCCCeEEEECCCCCCCCCEEEEEEEecccccEEEEEccC
Confidence 67899999999999754445899999999999999999998754
No 4
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.9e-80 Score=686.30 Aligned_cols=422 Identities=31% Similarity=0.529 Sum_probs=367.5
Q ss_pred CCCCceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHH---HHHhhCC--CCEE
Q 006836 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSAK--KPLV 129 (629)
Q Consensus 55 ~~~~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~i---r~~k~~~--~~VV 129 (629)
++.+++|||+||||+||++|||.|++.|.+.||++++++++||+|+||||+|+++|+++++..| +++++.+ .+|+
T Consensus 63 ~~~~~~~~i~T~GC~~N~~Dse~~~~~L~~~Gy~~~~~~~~ADviiiNTC~V~~~Ae~k~~~~i~~l~~~k~~~p~~~i~ 142 (509)
T PRK14327 63 MGNGRKFYIRTYGCQMNEHDTEVMAGIFEALGYEPTDDTEDADVILLNTCAIRENAENKVFGEIGHLKHLKRENPDLLIG 142 (509)
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHCcCEECCCcCCCCEEEEECCCCccHHHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 4566889999999999999999999999999999999999999999999999999999999998 5555554 4599
Q ss_pred EECcccCCCh---hh-hccc-ccEEEcCCCHHHHHHHHHHHhcCCce--EeecccCCCCC-CCCcccCCceEEEEEeCCC
Q 006836 130 VAGCVPQGSR---DL-KELE-GVSIVGVQQIDRVVEVVEETLKGHEV--RLLHRKKLPAL-DLPKVRRNKFVEILPINVG 201 (629)
Q Consensus 130 VgGc~a~~~~---e~-~~~~-~d~VvG~~e~~~l~ell~~~~~g~~~--~~~~~~~~p~~-~lp~~r~~~~~a~V~isrG 201 (629)
|+||+||..+ ++ ..++ +|.|+|+.++..+++++.....+... ..+... ...+ ++|..+.....++|+|++|
T Consensus 143 v~GCmaq~~~~~~~~~~~~p~vd~v~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~a~v~I~~G 221 (509)
T PRK14327 143 VCGCMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKEAYFSKEMVVEVWSKE-GDVIENLPKVREGNIKAWVNIMYG 221 (509)
T ss_pred EEcchhcCcCchHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCCceeeccccc-cccccccccccCCCeEEEEEecCC
Confidence 9999999988 43 4565 67899999999999999876544321 111110 0111 2454445567899999999
Q ss_pred CCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHHHHhCCCCCCceE
Q 006836 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTML 278 (629)
Q Consensus 202 Cp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~---~~l~eLL~~L~~~i~~~~~~~i 278 (629)
||++|+||++|+.+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+|++.|.+ + +..|+
T Consensus 222 C~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~-~---~i~~i 297 (509)
T PRK14327 222 CDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRK-I---DIPRV 297 (509)
T ss_pred CCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHh-C---CCceE
Confidence 9999999999999999999999999999999999999999999999999998753 357889999865 3 46799
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 006836 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (629)
Q Consensus 279 ri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG 358 (629)
|+.+.+|..+++.+ +..+.+.+.+|+++|+|+||||+++|+.|+|+|+.+++.++++.+++++|++.+++|||+||||
T Consensus 298 r~~s~~P~~i~del--i~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGfPg 375 (509)
T PRK14327 298 RFTTSHPRDFDDHL--IEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTTDIIVGFPN 375 (509)
T ss_pred EEeecCcccCCHHH--HHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEeeeEEEeCCC
Confidence 99989999888765 4334455667899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEE
Q 006836 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI 435 (629)
Q Consensus 359 ETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~ 435 (629)
||++||++|++|+++++++.+++|+|+|+||||++.|+ ++|++++++|+++|.++++. .+.+++++|++++||||+.
T Consensus 376 ET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~~~~~~~~~~G~~~~VLve~~ 455 (509)
T PRK14327 376 ETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYSAKKMKRYEGQTVEVLVEGE 455 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEec
Confidence 99999999999999999999999999999999999998 89999999999999999996 4678999999999999987
Q ss_pred ecC-CceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEe
Q 006836 436 AAD-GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 483 (629)
Q Consensus 436 ~~~-~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~ 483 (629)
++. ++.+.|||.+|.+|+|+++...+|++|+|+|+++..++|.|++++
T Consensus 456 ~~~~~~~~~Grt~~~~~V~~~~~~~~~G~~v~v~I~~~~~~~l~g~~~~ 504 (509)
T PRK14327 456 SKKNPEVLAGYTRKNKLVNFKGPKSLIGQLVKVKITEAKTWSLNGELVE 504 (509)
T ss_pred ccCCCceEEEECCCCcEEEECCCCCCCCCEEEEEEEeeecceEEEEEec
Confidence 543 236789999999999986555689999999999999999999987
No 5
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.4e-79 Score=676.11 Aligned_cols=420 Identities=25% Similarity=0.450 Sum_probs=361.0
Q ss_pred CCceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHH---hhC--CCCEEEE
Q 006836 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVA 131 (629)
Q Consensus 57 ~~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~---k~~--~~~VVVg 131 (629)
.+++|||+||||+||++|||.|++.|.+.||++++++++||+|+||||||+.+|++++++.+..+ |+. +.+||||
T Consensus 9 ~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADvviiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~ivv~ 88 (449)
T PRK14332 9 KLGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSNDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKKRNPNLVIGVL 88 (449)
T ss_pred CCCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccCeechHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 36789999999999999999999999999999999999999999999999999999998875544 443 3469999
Q ss_pred CcccCCChh-h-h-cccccEEEcCCCHHHHHHHHHHHhcCCceEeecc-cCCCCC-CCCcccCCceEEEEEeCCCCCCCC
Q 006836 132 GCVPQGSRD-L-K-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPAL-DLPKVRRNKFVEILPINVGCLGAC 206 (629)
Q Consensus 132 Gc~a~~~~e-~-~-~~~~d~VvG~~e~~~l~ell~~~~~g~~~~~~~~-~~~p~~-~lp~~r~~~~~a~V~isrGCp~~C 206 (629)
|||||.+++ + . ..++|.|+|++++..++++++....|........ .....+ ++|......+.++|+|+||||++|
T Consensus 89 GC~a~~~~e~l~~~~~~vD~vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~l~isrGC~~~C 168 (449)
T PRK14332 89 GCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRNGEKSISLTRLSKIETYDEIEPRVVNGIQAFVTIMRGCNNFC 168 (449)
T ss_pred CcccccchHHHhhccCCceEEECCCCHHHHHHHHHHHhcCCceeeecccccccccccccccccCCceEEEEecCCcCCCC
Confidence 999999996 3 2 3457889999999999999988766543221111 000111 123222334678999999999999
Q ss_pred CCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCc
Q 006836 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (629)
Q Consensus 207 sFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~ 286 (629)
+||++|..+|++|+||+++|++|++.+++.|+++|+|+|+|++.||.+. ..|.+||+++.+ .. +..|+|+++.+|.
T Consensus 169 sFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~-~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~ 244 (449)
T PRK14332 169 TFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQS-TDFAGLIQMLLD-ET--TIERIRFTSPHPK 244 (449)
T ss_pred CCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCc-ccHHHHHHHHhc-CC--CcceEEEECCCcc
Confidence 9999999999999999999999999999999999999999999998753 468999998865 33 6789999999999
Q ss_pred chhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHH
Q 006836 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366 (629)
Q Consensus 287 ~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~e 366 (629)
.+++.+ +..+.+.+++|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++++|++.+.+|||+||||||++||++
T Consensus 245 ~~~~el--l~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~ 322 (449)
T PRK14332 245 DFPDHL--LSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFED 322 (449)
T ss_pred cCCHHH--HHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHH
Confidence 887755 333445566799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEeceeCCCCccc-cCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecCC-ce
Q 006836 367 TVNLIKEYKFPQVHISQFYPRPGTPAA-RMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADG-IH 441 (629)
Q Consensus 367 Tl~fl~~l~~d~v~i~~ysP~PGTpa~-~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~-~~ 441 (629)
|++|+++++++.+++|.|||+||||++ .|+ ++|++++++|.++|++++++ .+.+++++|++++||||+.++++ ..
T Consensus 323 tl~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~~~~ 402 (449)
T PRK14332 323 TLAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTSRKSEKQ 402 (449)
T ss_pred HHHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccCCCCCe
Confidence 999999999999999999999999999 687 89999999999999999996 57889999999999999865443 36
Q ss_pred EEEEecCCeEEEECCC-----CCCCCCEEEEEEEEEeeceEEEEEE
Q 006836 442 LVGHTKGYVQVLVPST-----GNMLGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 442 ~~Grt~~y~~V~v~~~-----~~~~G~~v~V~I~~~~~~~l~g~~v 482 (629)
++||+++|.+|+|+.+ ...+|++++|+|++++.++|.|+++
T Consensus 403 ~~gr~~~~~~v~~~~~~~~~~~~~~G~~v~v~I~~~~~~~l~g~~~ 448 (449)
T PRK14332 403 LCGRTPCGRMTVFPLPEGQDLSDMIGSTVSVLIESATSATLKGKIL 448 (449)
T ss_pred EEEECCCCeEEEEecCCCcccccCCCCEEEEEEEecccCcEEEEEe
Confidence 7899999999988732 1247999999999999999999976
No 6
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=7.2e-79 Score=672.44 Aligned_cols=424 Identities=25% Similarity=0.451 Sum_probs=357.7
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHH---HhhC-CCCEEEECcc
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK---CKSA-KKPLVVAGCV 134 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~---~k~~-~~~VVVgGc~ 134 (629)
++|||+||||+||++|||.|++.|.+.||++++++++||+|+||||+||+.|+++++..+.. +|+. +++|||||||
T Consensus 1 ~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~A~~k~~~~~~~~~~~k~~~~~~ivv~GC~ 80 (455)
T PRK14335 1 MTYFFETYGCQMNVAESASMEQLLLARGWTKAVDAETCDVLIINTCSVRITAETRVFGRLGLFSSLKKKRAFFIILMGCM 80 (455)
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceechHHHHHHHHHHHHHHhhhCCCcEEEEeccc
Confidence 38999999999999999999999999999999999999999999999999999998875443 3322 3569999999
Q ss_pred cCCChh-h-hccc-ccEEEcCCCHHHHHHHHHHHhcC---Cce--E----eecccCCCCCCC-Cc-ccCCceEEEEEeCC
Q 006836 135 PQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKG---HEV--R----LLHRKKLPALDL-PK-VRRNKFVEILPINV 200 (629)
Q Consensus 135 a~~~~e-~-~~~~-~d~VvG~~e~~~l~ell~~~~~g---~~~--~----~~~~~~~p~~~l-p~-~r~~~~~a~V~isr 200 (629)
|+..++ + ..++ +|.|+|++++..|++++++...+ ... . .++..++|.+.+ |. ++.....++|+|+|
T Consensus 81 a~~~~~e~~~~~p~vd~v~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~I~r 160 (455)
T PRK14335 81 AERLHDEIQKEFPRIDYVVGTFAHARLESIFQEIEAKLKQDDYRFEFISERYREHPVSGYRFFPSSYSEGSFQSFIPIMN 160 (455)
T ss_pred ccchHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhhcccccceecccccccccccccccccCcccccCCCceEEEEhhc
Confidence 999996 4 4455 68899999999999998765321 110 0 011122333322 21 12335679999999
Q ss_pred CCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-Cc---CCCHHHHHHHHHHhCC-CCCC
Q 006836 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELP-PDGS 275 (629)
Q Consensus 201 GCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~-d~---~~~l~eLL~~L~~~i~-~~~~ 275 (629)
|||++|+||++|..+|+.|+||+++|++|++.+.+.|+++|+|+|+|++.||. +. ...+.+||++|.+... ..+.
T Consensus 161 GC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 240 (455)
T PRK14335 161 GCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQI 240 (455)
T ss_pred CCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCc
Confidence 99999999999999999999999999999999999999999999999999964 31 1368999999853211 1157
Q ss_pred ceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc
Q 006836 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (629)
Q Consensus 276 ~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvG 355 (629)
.|+|+.+++|..+++.+ +..+.+.+.+|+++|+|+||+|+++|+.|||+|+.+++.++++.+++++||+.+.+|||+|
T Consensus 241 ~~ir~~s~~p~~i~~el--l~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvG 318 (455)
T PRK14335 241 RWIRFMSSHPKDLSDDL--IATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTDILIG 318 (455)
T ss_pred eEEEEeecCcccCCHHH--HHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEe
Confidence 89999999999888765 4334444567999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEE
Q 006836 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWI 432 (629)
Q Consensus 356 fPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlv 432 (629)
|||||++||++|++|+++++++.+++|+|+|+||||+++|+ ++|++++++|.++|+++++. .+.+++++|++++|||
T Consensus 319 fPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlv 398 (455)
T PRK14335 319 FPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQMSITLKKMKARVGKTLPVLV 398 (455)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 99999999999999999999999999999999999999998 89999999999999999996 4688999999999999
Q ss_pred EEEecCC-ceEEEEecCCeEEEECCC--CCCCCCEEEEEEEEEeeceEEEEEEec
Q 006836 433 TEIAADG-IHLVGHTKGYVQVLVPST--GNMLGTSALVKITSVGRWSVFGEVIKI 484 (629)
Q Consensus 433 e~~~~~~-~~~~Grt~~y~~V~v~~~--~~~~G~~v~V~I~~~~~~~l~g~~v~~ 484 (629)
|+.++++ +.++|||++|.+|+++++ ....|++++|+|+++.+++|.|+++..
T Consensus 399 e~~~~~~~~~~~g~t~~~~~v~~~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~ 453 (455)
T PRK14335 399 ESRSRNNPEELFGHTELGEMTVLEGKVDETLIGRFVDVQLKELRGRTFRAHLVQE 453 (455)
T ss_pred eccccCCCCeeEEECCCCeEEEEcCCcccCCCCCEEEEEEEEcccCeEEEEEecC
Confidence 9754332 367899999999999753 234799999999999999999998753
No 7
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.1e-78 Score=668.09 Aligned_cols=419 Identities=32% Similarity=0.534 Sum_probs=364.3
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHH----hhCCCCEEEECcc
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC----KSAKKPLVVAGCV 134 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~----k~~~~~VVVgGc~ 134 (629)
++|||+||||++|++|||.|++.|.+.||+.++++++||+|+||||+|++.++++++++++++ |+++++|||||||
T Consensus 1 ~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~~~~vvv~Gc~ 80 (434)
T PRK14330 1 MKFYIKTFGCQMNENDSETMAGLLKKEGFEPASNPEEADVVIINTCAVRRKSEEKAYSELGQLLKLKRKKNLIIGVAGCV 80 (434)
T ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccceeehHHHHHHHHHHHHHHhcccCCCEEEEECcc
Confidence 379999999999999999999999999999999999999999999999999999999999999 5668899999999
Q ss_pred cCCChh-hhcccccEEEcCCCHHHHHHHHHHHhcCCceEeecccCCCCC--CCCcccCCceEEEEEeCCCCCCCCCCCcc
Q 006836 135 PQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKT 211 (629)
Q Consensus 135 a~~~~e-~~~~~~d~VvG~~e~~~l~ell~~~~~g~~~~~~~~~~~p~~--~lp~~r~~~~~a~V~isrGCp~~CsFC~i 211 (629)
||..|+ +....+|.|+|+.++..|+++|++...|....... ...+.. ..|..+.....++|+++||||++|+||++
T Consensus 81 a~~~~ee~~~~~~d~vvg~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~CsFC~i 159 (434)
T PRK14330 81 AEKEREKLLKRGADFVIGTRAVPKVTEAVKRALNGEKVALFE-DKLDEITYELPRIRSSKHHAWVTIIYGCNRFCTYCIV 159 (434)
T ss_pred ccCchhhHHhcCCcEEEcCCCHHHHHHHHHHHhcCCceEeec-ccccccccccccccCCCcEEEEEcccCCCCCCCCCce
Confidence 999997 44445678999999999999999887665321111 111111 11222223467899999999999999999
Q ss_pred CccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchh
Q 006836 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289 (629)
Q Consensus 212 p~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~--~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~ 289 (629)
|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+||+.+.+ ++ +..++++.+.+|..++
T Consensus 160 p~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~-~~--~~~~~~~~~~~p~~~~ 236 (434)
T PRK14330 160 PYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK-IE--GIERIWFLTSYPTDFS 236 (434)
T ss_pred ECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHh-cC--CceEEEEecCChhhcC
Confidence 99999999999999999999999999999999999999998774 2568899988765 44 5678888888998877
Q ss_pred HHHHHHHHHH-hCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHH
Q 006836 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTV 368 (629)
Q Consensus 290 ~~l~el~~l~-~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl 368 (629)
+.+ .+++ +.+.+|+++|||+||+|+++|+.|+|+|+.+++.++++.+++++|++.+.+|||+||||||+++|++|+
T Consensus 237 ~el---l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvGfPgET~edf~~tl 313 (434)
T PRK14330 237 DEL---IEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSDIIVGFPTETEEDFMETV 313 (434)
T ss_pred HHH---HHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHH
Confidence 654 3444 445578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEeceeCCCCcccc-CC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecCCceEEE
Q 006836 369 NLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVG 444 (629)
Q Consensus 369 ~fl~~l~~d~v~i~~ysP~PGTpa~~-~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~G 444 (629)
+|+++++++.+++|.|+|+||||+++ ++ ++|++++++|.++|++++++ .+.+++++|++++||||+.++++ .+.|
T Consensus 314 ~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~-~~~g 392 (434)
T PRK14330 314 DLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQYLLNLQKRINRKLNERYLGKTVEIIVEAKAKNG-LFYG 392 (434)
T ss_pred HHHHhcCCCEEeeeeccCCCCChhhhhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEccCCC-eEEE
Confidence 99999999999999999999999999 66 89999999999999999996 56889999999999999754444 6789
Q ss_pred EecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEecc
Q 006836 445 HTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKIL 485 (629)
Q Consensus 445 rt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~ 485 (629)
||.+|.+|+++++...+|++++|+|+++.+++|.|+++..+
T Consensus 393 ~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~~~ 433 (434)
T PRK14330 393 RDIRNKIIAFEGEEELIGRFADVKIEKITAGPLYGKVVKIL 433 (434)
T ss_pred ECCCCEEEEECCCCCCCCCEEEEEEEEeecCeEEEEEEEec
Confidence 99999999997544458999999999999999999988754
No 8
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.7e-78 Score=671.20 Aligned_cols=425 Identities=28% Similarity=0.461 Sum_probs=363.3
Q ss_pred CCCCCCceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHH---HHHhhCC--CC
Q 006836 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSAK--KP 127 (629)
Q Consensus 53 ~~~~~~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~i---r~~k~~~--~~ 127 (629)
+-.|++++|||+||||++|++|||.|++.|.+.||++++++++||+|+||||||+.+|++++++.+ +++|+.+ ++
T Consensus 18 ~~~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ 97 (467)
T PRK14329 18 AKPKNTKKLFIESYGCQMNFADSEIVASILQMAGYNTTENLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKNPKLI 97 (467)
T ss_pred ccCCCCCEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhCCCcE
Confidence 346788999999999999999999999999999999999999999999999999999999999998 5556543 46
Q ss_pred EEEECcccCCChh-h-hccc-ccEEEcCCCHHHHHHHHHHHhcCCceEeec---ccCCCCCCCCc-ccCCceEEEEEeCC
Q 006836 128 LVVAGCVPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLH---RKKLPALDLPK-VRRNKFVEILPINV 200 (629)
Q Consensus 128 VVVgGc~a~~~~e-~-~~~~-~d~VvG~~e~~~l~ell~~~~~g~~~~~~~---~~~~p~~~lp~-~r~~~~~a~V~isr 200 (629)
||||||||+.+++ + ...+ +|.|+|++++..|+++++....+....... ...++.. .|. .......++|++||
T Consensus 98 ivvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~isr 176 (467)
T PRK14329 98 VGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEEGRKAINVILSKEETYADI-SPVRLGGNGVSAFVSIMR 176 (467)
T ss_pred EEEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHhcCCcceecccccccccccc-ccccccCCCcEEEEEecc
Confidence 9999999999986 3 4445 788999999999999998876554321111 0111111 121 11234678999999
Q ss_pred CCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-------CCHHHHHHHHHHhCCCC
Q 006836 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELPPD 273 (629)
Q Consensus 201 GCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-------~~l~eLL~~L~~~i~~~ 273 (629)
|||++|+||++|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.|+.+.. ..|.+||+.+.+..
T Consensus 177 GCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~--- 253 (467)
T PRK14329 177 GCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAV--- 253 (467)
T ss_pred CcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcC---
Confidence 99999999999999999999999999999999999999999999999999986632 35889999887643
Q ss_pred CCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 006836 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353 (629)
Q Consensus 274 ~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~I 353 (629)
+..++|+++.+|..+++.+ +..+.+.+++|+++|||+||+|+++|+.|||+++.+++.++++.++++.|++.+.+|||
T Consensus 254 ~~~~ir~~~~~p~~l~~el--l~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~~i~~d~I 331 (467)
T PRK14329 254 PDMRIRFSTSHPKDMTDDV--LEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDCGISTDMI 331 (467)
T ss_pred CCcEEEEecCCcccCCHHH--HHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEeEE
Confidence 3468999988998887654 33333444579999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccc-CC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEE
Q 006836 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVER 429 (629)
Q Consensus 354 vGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~-~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~ 429 (629)
+||||||++||++|++|+++++++.+++|+|+|+||||+++ |+ ++|++++++|.++|+++++. .+.+++++|++++
T Consensus 332 vGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~ 411 (467)
T PRK14329 332 AGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQELSLERNQRDIGKTFE 411 (467)
T ss_pred EeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999995 77 89999999999999999985 5788999999999
Q ss_pred EEEEEEecC-CceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEe
Q 006836 430 IWITEIAAD-GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 483 (629)
Q Consensus 430 Vlve~~~~~-~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~ 483 (629)
||||+.+++ ++.+.|||++|.+|+++++....|++++|+|+++.+++|.|+++.
T Consensus 412 vlve~~~~~~~~~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~ 466 (467)
T PRK14329 412 VLIEGVSKRSREQLFGRNSQNKVVVFPKENYKIGDFVNVRITDCTSATLLGEAVG 466 (467)
T ss_pred EEEEecccCCCCeEEEECCCCeEEEECCCCCCCCCEEEEEEEEeecCcEEEEEec
Confidence 999975433 236789999999999975444589999999999999999999864
No 9
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.3e-77 Score=660.05 Aligned_cols=419 Identities=34% Similarity=0.579 Sum_probs=362.0
Q ss_pred eEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHH---HHHhhC--CCCEEEECcc
Q 006836 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKPLVVAGCV 134 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~i---r~~k~~--~~~VVVgGc~ 134 (629)
+|||+||||++|++|||.|++.|.+.||++++++++||+++||||||+.++++++++.+ +++|+. +.+|||||||
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv~Gc~ 81 (437)
T PRK14331 2 KYYIKTFGCQMNFNDSEKIKGILQTLGYEPADDWEEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNPNALIGVCGCL 81 (437)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCCCCEEEEEcch
Confidence 79999999999999999999999999999999999999999999999999999999888 666654 4569999999
Q ss_pred cCCChh-h-hccc-ccEEEcCCCHHHHHHHHHHHhcCCc-eEeeccc--CCCCCC-CCcccCCceEEEEEeCCCCCCCCC
Q 006836 135 PQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHE-VRLLHRK--KLPALD-LPKVRRNKFVEILPINVGCLGACT 207 (629)
Q Consensus 135 a~~~~e-~-~~~~-~d~VvG~~e~~~l~ell~~~~~g~~-~~~~~~~--~~p~~~-lp~~r~~~~~a~V~isrGCp~~Cs 207 (629)
|+.+|+ + ...+ .|.|+|++++..++++++....+.. ....... ..+.++ +|..+.....++|+++||||++|+
T Consensus 82 a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ld~~p~~~~~~~~a~v~i~rGC~~~Cs 161 (437)
T PRK14331 82 AQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQAKAGNKAIEILEEIDEDENKLDEYPTVRDNKYCAYVTVMRGCDKKCT 161 (437)
T ss_pred hcCChHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccccCCCcEEEEEeccCcCCCCc
Confidence 999995 4 4555 5789999999999999987665432 1111111 111221 333333356789999999999999
Q ss_pred CCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhCCCCCCceEEEeecCCc
Q 006836 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (629)
Q Consensus 208 FC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~L~~~i~~~~~~~iri~~~~p~ 286 (629)
||.+|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..+.+|++.+.+ .+ +..++++++.+|.
T Consensus 162 FC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~-~~--g~~~i~~~~~~p~ 238 (437)
T PRK14331 162 YCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAE-ID--GVERIRFTTGHPR 238 (437)
T ss_pred cCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhc-CC--CccEEEEeccCcc
Confidence 9999999999999999999999999999999999999999999998753 578999999876 33 5678999988998
Q ss_pred chhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHH
Q 006836 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366 (629)
Q Consensus 287 ~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~e 366 (629)
.+++.+ +..+...+++|+++|+|+||||+++|+.|+|+++.+++.++++.+++++||+.+.+|||+||||||++||++
T Consensus 239 ~l~~el--l~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~~ 316 (437)
T PRK14331 239 DLDEDI--IKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFEE 316 (437)
T ss_pred cCCHHH--HHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHHH
Confidence 877655 333334445799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecCCceEE
Q 006836 367 TVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLV 443 (629)
Q Consensus 367 Tl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~ 443 (629)
|++|+++++++.+++|+|+|+||||+++++ ++|++++++|.++|.+++++ .+.+++++|++++||||+..++ +.++
T Consensus 317 tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~~~-~~~~ 395 (437)
T PRK14331 317 TLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPDEVKTKRMNRLLELQKEITFKKALSYEGTVQEVLVEEEKEG-NKLI 395 (437)
T ss_pred HHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCC-CcEE
Confidence 999999999999999999999999999998 89999999999999999986 5678999999999999975333 3678
Q ss_pred EEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEec
Q 006836 444 GHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 484 (629)
Q Consensus 444 Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~ 484 (629)
|||++|.+|+++++....|++++|+|+++++++|.|+++..
T Consensus 396 g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~~ 436 (437)
T PRK14331 396 GRTRTNKWVSIEGSQEMLGKIVKVKIIKSNPFSLEGEILEG 436 (437)
T ss_pred EECCCCCEEEECCCCCCCCCEEEEEEEeeecccEEEEEecc
Confidence 99999999999754445899999999999999999998764
No 10
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.2e-77 Score=666.43 Aligned_cols=425 Identities=29% Similarity=0.491 Sum_probs=361.9
Q ss_pred CCCCCCCceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHH---HHHHHHhhC--CC
Q 006836 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD---TLIAKCKSA--KK 126 (629)
Q Consensus 52 ~~~~~~~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~---~~ir~~k~~--~~ 126 (629)
.+-+++.++|||+||||+||++|||.|++.|.+.||++++++++||+|+||||||+.+++++++ ..++++|+. +.
T Consensus 7 ~~~~~~~~~~~i~T~GC~~N~~dse~~~~~L~~~G~~~~~~~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~~~p~~ 86 (502)
T PRK14326 7 PAAARGARTYQVRTYGCQMNVHDSERLAGLLEAAGYVRAAEGQDADVVVFNTCAVRENADNRLYGNLGHLAPVKRANPGM 86 (502)
T ss_pred cccCCCCCEEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHHhCCCC
Confidence 3446777899999999999999999999999999999999999999999999999999999998 444555553 56
Q ss_pred CEEEECcccCCChh-hh-ccc-ccEEEcCCCHHHHHHHHHHHhcCCceEeec---ccCCCCCCCCcccCCceEEEEEeCC
Q 006836 127 PLVVAGCVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLH---RKKLPALDLPKVRRNKFVEILPINV 200 (629)
Q Consensus 127 ~VVVgGc~a~~~~e-~~-~~~-~d~VvG~~e~~~l~ell~~~~~g~~~~~~~---~~~~p~~~lp~~r~~~~~a~V~isr 200 (629)
+||||||||+.+++ +. ..+ +|.|+|+.++..|++++.+...+....... ...+|. .+|..+...+.++|+|+|
T Consensus 87 ~VvvgGc~a~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~p~-~~p~~~~~~~~a~v~isr 165 (502)
T PRK14326 87 QIAVGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERARHNKEAQVEIAESLEQFPS-TLPARRESAYAAWVSISV 165 (502)
T ss_pred EEEEECcccccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHHhhCCCcccccccccccccc-ccccccCCCceEEEEEcc
Confidence 79999999999997 43 334 688999999999999998876554321111 011121 123222334578999999
Q ss_pred CCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceE
Q 006836 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTML 278 (629)
Q Consensus 201 GCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~L~~~i~~~~~~~i 278 (629)
|||++|+||++|.++|+.|+||+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+|++.+.. +. +..|+
T Consensus 166 GCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~-i~--~l~~i 242 (502)
T PRK14326 166 GCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGE-ID--GLERV 242 (502)
T ss_pred CCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHh-cC--CccEE
Confidence 99999999999999999999999999999999999999999999999999998753 357888888865 44 66789
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 006836 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (629)
Q Consensus 279 ri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG 358 (629)
|+++.+|..+++.+ +..+.+.+.+|+++|+|+||+|+++|+.|||+|+.+++.++++.+++++|++.+.+|||+||||
T Consensus 243 r~~~~~p~~~~~el--l~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~~IvGfPg 320 (502)
T PRK14326 243 RFTSPHPAEFTDDV--IEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTDIIVGFPG 320 (502)
T ss_pred EEeccChhhCCHHH--HHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEEEEEECCC
Confidence 99999998887654 3334344557999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEE
Q 006836 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI 435 (629)
Q Consensus 359 ETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~ 435 (629)
||++||++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|+++|+++++. .+.+++++|++++||||+.
T Consensus 321 ET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~~~~~v~~~v~~~R~~~l~~~~~~~~~~~~~~~vg~~~~vLve~~ 400 (502)
T PRK14326 321 ETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEMEGQLPKAVVQERYERLVALQERISLEENRKLVGRTVELLVATG 400 (502)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEec
Confidence 99999999999999999999999999999999999998 89999999999999999985 5678999999999999842
Q ss_pred -ecCC---ceEEEEecCCeEEEECCC----CCCCCCEEEEEEEEEeeceEEEEEE
Q 006836 436 -AADG---IHLVGHTKGYVQVLVPST----GNMLGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 436 -~~~~---~~~~Grt~~y~~V~v~~~----~~~~G~~v~V~I~~~~~~~l~g~~v 482 (629)
++.+ ..+.||+++|..|+|+.+ ...+|++++|+|+++.+++|.|+++
T Consensus 401 ~~~~~~~~~~~~g~~~~~~~V~~~~~~~~~~~~~G~~v~v~I~~~~~~~L~g~~~ 455 (502)
T PRK14326 401 EGRKDAATHRMSGRARDGRLVHFTVPEGAPEVRPGDVVTVTVTYAAPHHLIADGG 455 (502)
T ss_pred ccccCCcCceeEEECCCCCEEEEccCCccccCCCCCEEEEEEEecccCcEEEEEe
Confidence 2121 247899999999999752 2358999999999999999999987
No 11
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.7e-77 Score=660.78 Aligned_cols=418 Identities=31% Similarity=0.546 Sum_probs=361.1
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHH---hhC--CCCEEEEC
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAG 132 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~---k~~--~~~VVVgG 132 (629)
.++|||+||||++|++|||.|.+.|.+.||++++++++||+|+||||+|++.|++++++.|+++ ++. +.+|||||
T Consensus 6 ~~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvv~G 85 (448)
T PRK14333 6 RRSYWITTFGCQMNKADSERMAGILEDMGYQWAEDELQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKHKNPDLTLVVAG 85 (448)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 4699999999999999999999999999999999999999999999999999999998888766 343 45699999
Q ss_pred cccCCChh-hh-ccc-ccEEEcCCCHHHHHHHHHHHhcCCceEeecccCCCCC-CCCccc-CCceEEEEEeCCCCCCCCC
Q 006836 133 CVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPINVGCLGACT 207 (629)
Q Consensus 133 c~a~~~~e-~~-~~~-~d~VvG~~e~~~l~ell~~~~~g~~~~~~~~~~~p~~-~lp~~r-~~~~~a~V~isrGCp~~Cs 207 (629)
||||..|+ +. .++ +|.|+|++++..|++++++...|...... ...+.+ ++|..+ .....+||++++|||++|+
T Consensus 86 c~a~~~~~~~~~~~p~vD~v~g~~~~~~~~~ll~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~a~i~i~~GC~~~Cs 163 (448)
T PRK14333 86 CVAQQEGESLLRRVPELDLVMGPQHANRLEDLLEQVDAGNQVVAT--EEIHILEDITKPRRDSSITAWVNVIYGCNERCT 163 (448)
T ss_pred ccCccCHHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCceeec--ccccccccccccccCCCeeEEEEhhcCCCCCCC
Confidence 99999997 44 455 58899999999999999887655422111 111111 222211 2235789999999999999
Q ss_pred CCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC---------CCHHHHHHHHHHhCCCCCCceE
Q 006836 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---------VNLPILLNAIVAELPPDGSTML 278 (629)
Q Consensus 208 FC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~---------~~l~eLL~~L~~~i~~~~~~~i 278 (629)
||.+|.++|+.|++|+++|++|++.+.+.|+++|+|+|+|++.||.|+. ..|.+||+.+.+ ++ +..++
T Consensus 164 FC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~-~~--~~~ri 240 (448)
T PRK14333 164 YCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHD-VE--GIERI 240 (448)
T ss_pred CCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHh-cC--CCeEE
Confidence 9999999999999999999999999999999999999999999987642 268999999876 44 67899
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 006836 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (629)
Q Consensus 279 ri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG 358 (629)
|+++.+|..+++.+ +..+...+.+|+++|||+||+|+++|+.|+|+|+.+++.++++.+++++|++.+.+|||+||||
T Consensus 241 r~~~~~p~~~~~el--i~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i~i~~d~IvGfPg 318 (448)
T PRK14333 241 RFATSHPRYFTERL--IKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDASISADAIVGFPG 318 (448)
T ss_pred EECCCChhhhhHHH--HHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEEeeEEEECCC
Confidence 99888998887755 3334444567999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEE
Q 006836 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI 435 (629)
Q Consensus 359 ETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~ 435 (629)
||++||++|++|+++++++.+++|+|+|+||||+++|+ ++|.+++++|.++|++++++ .+.+++++|++++||||+.
T Consensus 319 ET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~ 398 (448)
T PRK14333 319 ETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVEQKAAERSQRYLGRIEEVLVEGI 398 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEec
Confidence 99999999999999999999999999999999999997 89999999999999999985 5678999999999999975
Q ss_pred ecC-CceEEEEecCCeEEEECCC-CCCCCCEEEEEEEEEeeceEEEEEE
Q 006836 436 AAD-GIHLVGHTKGYVQVLVPST-GNMLGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 436 ~~~-~~~~~Grt~~y~~V~v~~~-~~~~G~~v~V~I~~~~~~~l~g~~v 482 (629)
+++ ++.++|||++|.+|+|..+ ....|++++|+|++++.++|.|+++
T Consensus 399 ~~~~~~~~~g~t~~~~~v~~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 447 (448)
T PRK14333 399 NPKDPSQVMGRTRTNRLTFFEGDINQLKGDLVKVKITEVRAFSLTGEPL 447 (448)
T ss_pred ccCCCceEEEECCCCcEEEEcCCCcCCCCCEEEEEEEeeecceEEEEEc
Confidence 433 2468899999999999754 3357999999999999999999975
No 12
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=8.4e-77 Score=654.78 Aligned_cols=418 Identities=28% Similarity=0.467 Sum_probs=355.5
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHH---hhC--CCCEEEECc
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAGC 133 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~---k~~--~~~VVVgGc 133 (629)
++|||+||||++|++|||.|.+.|.+.||++++. ++||+++||||||+..|++++++.++++ |+. +++||||||
T Consensus 4 ~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~-~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~~~p~~~ivv~GC 82 (446)
T PRK14337 4 RTFHIITFGCQMNVNDSDWLARALVARGFTEAPE-EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATKKNPDVFVAVGGC 82 (446)
T ss_pred cEEEEEeeCCCCcHHHHHHHHHHHHHCCCEECCc-CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 5799999999999999999999999999999885 7899999999999999999999986655 544 356999999
Q ss_pred ccCCChh-h-hccc-ccEEEcCCCHHHHHHHHHHHhcCCceEe-e-cc-cCCCCCCC-CcccCCceEEEEEeCCCCCCCC
Q 006836 134 VPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRL-L-HR-KKLPALDL-PKVRRNKFVEILPINVGCLGAC 206 (629)
Q Consensus 134 ~a~~~~e-~-~~~~-~d~VvG~~e~~~l~ell~~~~~g~~~~~-~-~~-~~~p~~~l-p~~r~~~~~a~V~isrGCp~~C 206 (629)
+||.+++ + ..++ +|.|+|++++..++++++....+..... + +. .+++.... +.....+..++|+|+||||++|
T Consensus 83 ~a~~~~~~~~~~~p~vd~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~i~rGC~~~C 162 (446)
T PRK14337 83 VAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALERLAEEPDLRLSLLDFSEHYPEREALWGNGTVPASAFVNIMQGCDNFC 162 (446)
T ss_pred ccccccHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCCceecccccccccccccccccccCCCcEEEEEeccCCCCCC
Confidence 9999876 3 3565 5789999999999999987654332111 1 10 11222111 2222335679999999999999
Q ss_pred CCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---CCCHHHHHHHHHHhCCCCCCceEEEeec
Q 006836 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGMT 283 (629)
Q Consensus 207 sFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~---~~~l~eLL~~L~~~i~~~~~~~iri~~~ 283 (629)
+||++|..+|++|++|+++|++|++.+++.|+++|+|+|+|++.||.|. ...+.+|+++|.+ ++ +..++|+++.
T Consensus 163 sFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~-~~--g~~~ir~~~~ 239 (446)
T PRK14337 163 AYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAA-LP--GLERLRFTTP 239 (446)
T ss_pred cCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHh-cC--CCcEEEEccC
Confidence 9999999999999999999999999999999999999999999998774 2478999999875 44 6678999989
Q ss_pred CCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH
Q 006836 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 363 (629)
Q Consensus 284 ~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeed 363 (629)
+|..+++.+ +..+...+.+|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++++|++.+.+|||+||||||++|
T Consensus 240 ~p~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~d~IvG~PgET~ed 317 (446)
T PRK14337 240 HPKDIAPEV--IEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTTDLIVGFPGETEED 317 (446)
T ss_pred CcccCCHHH--HHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEECCCCCHHH
Confidence 999888654 333334455799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecC--
Q 006836 364 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD-- 438 (629)
Q Consensus 364 f~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~-- 438 (629)
|++|++|+++++++.+++|.|||+||||++.|+ ++|++++++|.++|+++++. .+.+++++|++++||||+..++
T Consensus 318 ~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~~ 397 (446)
T PRK14337 318 FEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNELTERWLQARVGRKTTVLLEGPSRKPG 397 (446)
T ss_pred HHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccccCC
Confidence 999999999999999999999999999999998 89999999999999999996 4678999999999999974322
Q ss_pred --CceEEEEecCCeEEEE--CCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 006836 439 --GIHLVGHTKGYVQVLV--PSTGNMLGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 439 --~~~~~Grt~~y~~V~v--~~~~~~~G~~v~V~I~~~~~~~l~g~~v 482 (629)
+..+.|++.+|.+|.| +.+...+|++++|+|+++.+++|.|+++
T Consensus 398 ~~~~~~~g~~~~~~~v~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 445 (446)
T PRK14337 398 EGGDSWQGRDPGGRVVNVPLPAGADLTGRLVPVRITEAKKHSLVGEPA 445 (446)
T ss_pred CCCceEEEECCCCeEEEEecCCCcCCCCCEEEEEEEeeecceEEEEEC
Confidence 2357899999998755 4333348999999999999999999864
No 13
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=8.6e-77 Score=649.49 Aligned_cols=403 Identities=29% Similarity=0.486 Sum_probs=351.8
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHH---HHHHhhC--CCCEEEEC
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL---IAKCKSA--KKPLVVAG 132 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~---ir~~k~~--~~~VVVgG 132 (629)
|++|||+||||++|++|||.|.+.|.+.||++++++++||+|+||||+|+.+|++++++. ++++++. +++|||||
T Consensus 1 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~viiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~~ivv~G 80 (418)
T PRK14336 1 MPGYYLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHLLRKLKNKNPKLKIALTG 80 (418)
T ss_pred CCeEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccEecHHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 568999999999999999999999999999999999999999999999999999999954 4555554 45699999
Q ss_pred cccCCChh-hh-ccc-ccEEEcCCCHHHHHHHHHHHhcCCceEeecccCCCCCCCCcccCCceEEEEEeCCCCCCCCCCC
Q 006836 133 CVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209 (629)
Q Consensus 133 c~a~~~~e-~~-~~~-~d~VvG~~e~~~l~ell~~~~~g~~~~~~~~~~~p~~~lp~~r~~~~~a~V~isrGCp~~CsFC 209 (629)
|+||.+++ +. .++ +|.|+|+++...+.+.+... .+|. ..+..++|+|+||||++|+||
T Consensus 81 C~~~~~~~~l~~~~p~vd~v~g~~~~~~~~~~~~~~-----------------~~~~--~~~~~a~i~i~rGC~~~CsFC 141 (418)
T PRK14336 81 CLVGQDISLIRKKFPFVDYIFGPGSMPDWREIPEGF-----------------ILPL--KPPVSANVTIMQGCDNFCTYC 141 (418)
T ss_pred ChhcCCHHHHHhhCCCCcEEECCCCHHHHHHHHhhh-----------------ccCC--CCCeEEEEEeccCCCCCCccC
Confidence 99999986 54 566 57899999877666555311 0111 134678999999999999999
Q ss_pred ccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEeecCCcc
Q 006836 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (629)
Q Consensus 210 ~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~ 287 (629)
++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+||+.+.+ ++ +..++|+.+.+|..
T Consensus 142 ~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~ 218 (418)
T PRK14336 142 VVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHD-IP--GLLRIRFLTSHPKD 218 (418)
T ss_pred CccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHh-cC--CccEEEEeccChhh
Confidence 99999999999999999999999999999999999999999998753 469999999975 44 66799999889988
Q ss_pred hhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHH
Q 006836 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367 (629)
Q Consensus 288 i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eT 367 (629)
+++.+ +..+...+.+|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++++||+.+.+|||+||||||+++|++|
T Consensus 219 i~~el--l~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~t 296 (418)
T PRK14336 219 ISQKL--IDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQS 296 (418)
T ss_pred cCHHH--HHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHH
Confidence 87654 3333344567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEeceeCCCCcccc-CC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecCCceEE
Q 006836 368 VNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLV 443 (629)
Q Consensus 368 l~fl~~l~~d~v~i~~ysP~PGTpa~~-~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~ 443 (629)
++|+++++++.+++|.|+|+||||+++ |+ ++|++++++|.++|.++++. .+.++.++|++.+||||+.. ++ .+.
T Consensus 297 l~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~-~~-~~~ 374 (418)
T PRK14336 297 YKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVEGLQ-KN-KWQ 374 (418)
T ss_pred HHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEcC-CC-eEE
Confidence 999999999999999999999999994 87 89999999999999999995 46788999999999999742 23 578
Q ss_pred EEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEeccc
Q 006836 444 GHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILN 486 (629)
Q Consensus 444 Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~ 486 (629)
||+.+|.+|+++++....|++++|+|++++.++|.|+++...+
T Consensus 375 g~~~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~~~ 417 (418)
T PRK14336 375 GRTLGGKLVFLESDLPLEGCLVNVKIFKTSPWSLQAKLVNILE 417 (418)
T ss_pred EECCCCeEEEECCCCCCCCCEEEEEEEEeecccEEEEEeeccC
Confidence 9999999999975443579999999999999999999987643
No 14
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.3e-76 Score=653.71 Aligned_cols=423 Identities=32% Similarity=0.507 Sum_probs=361.1
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHH---hhC--CCCEEEEC
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAG 132 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~---k~~--~~~VVVgG 132 (629)
|+||+|+||||++||+|||.|++.|.+.||+++++.++||+++||||||+..+++++++.++++ |+. +++|||||
T Consensus 3 ~~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvvgG 82 (444)
T PRK14325 3 MKKLYIKTYGCQMNEYDSSKMADLLGAEGYELTDDPEEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIGVGG 82 (444)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999988876544 553 56899999
Q ss_pred cccCCChh-hh-ccc-ccEEEcCCCHHHHHHHHHHHh-cCCceEeecccCCCCCC-CCcccCCceEEEEEeCCCCCCCCC
Q 006836 133 CVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETL-KGHEVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACT 207 (629)
Q Consensus 133 c~a~~~~e-~~-~~~-~d~VvG~~e~~~l~ell~~~~-~g~~~~~~~~~~~p~~~-lp~~r~~~~~a~V~isrGCp~~Cs 207 (629)
|||+..|+ +. ..+ +|.|+|++++..|++++++.. .|...........+.++ +|..+.....++++++||||++|+
T Consensus 83 c~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~d~~p~~~~~~~~~~i~isrGCp~~Cs 162 (444)
T PRK14325 83 CVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARARRGGKPVVDISFPEIEKFDHLPEPRAEGPSAFVSIMEGCDKYCT 162 (444)
T ss_pred chhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhcCCceeeecccccccccccccccCCCceEEEEhhhCCCCCCC
Confidence 99999997 33 354 688999999999999998764 44322211111112222 232222346789999999999999
Q ss_pred CCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-Cc---CCCHHHHHHHHHHhCCCCCCceEEEeec
Q 006836 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELPPDGSTMLRIGMT 283 (629)
Q Consensus 208 FC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~-d~---~~~l~eLL~~L~~~i~~~~~~~iri~~~ 283 (629)
||++|..+|+.++||+++|++|++.+++.|+++|+|+|+|++.|+. +. ...+.+|++.|.+ ++ +..++|+++.
T Consensus 163 FC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~ 239 (444)
T PRK14325 163 FCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAA-ID--GIERIRYTTS 239 (444)
T ss_pred ccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHh-cC--CccEEEEccC
Confidence 9999999999999999999999999999999999999999999943 22 2368999999875 44 5678999888
Q ss_pred CCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH
Q 006836 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 363 (629)
Q Consensus 284 ~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeed 363 (629)
+|..+++.+ +..+.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.++++.||+.+.+|||+||||||+++
T Consensus 240 ~p~~~~~el--l~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed 317 (444)
T PRK14325 240 HPRDFTDDL--IEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSDFIVGFPGETDED 317 (444)
T ss_pred CcccCCHHH--HHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHH
Confidence 998887655 333444455799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecCCc
Q 006836 364 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGI 440 (629)
Q Consensus 364 f~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~ 440 (629)
|++|++|+++++++.+++|.|+|+||||++.|+ ++|++++++|.++|+++++. .+.+++++|++++||||+..++++
T Consensus 318 ~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~~~~~ 397 (444)
T PRK14325 318 FEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPDDVPEEVKKERLQRLQALINQQQMAFSRSMVGTVQRVLVEGPSRKDG 397 (444)
T ss_pred HHHHHHHHHhcCCCeeeeeeccCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEeecCCC
Confidence 999999999999999999999999999999998 89999999999999999995 567889999999999997544323
Q ss_pred eEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEecc
Q 006836 441 HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKIL 485 (629)
Q Consensus 441 ~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~ 485 (629)
.++|||.+|.+|+|..+...+|++++|+|+++.+++|+|++++..
T Consensus 398 ~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~~~ 442 (444)
T PRK14325 398 QLIGRTENNRVVNFEGDPDLIGQFVDVKITEAYPNSLRGELVRTE 442 (444)
T ss_pred eEEEECCCCcEEEECCCCCCCCCEEEEEEEEcccccEEEEEeecC
Confidence 678999999999997543358999999999999999999998764
No 15
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=100.00 E-value=1e-76 Score=649.64 Aligned_cols=416 Identities=46% Similarity=0.790 Sum_probs=361.0
Q ss_pred eEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCCCh
Q 006836 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~~~ 139 (629)
+++|+||||+||++|||+|++.|.+.||++++++++||+++||||||+..+++++++.|+++++.+++|||||||||.+|
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADviiinTC~v~~~a~~~~~~~i~~~~~~~~~vvv~GC~a~~~~ 80 (420)
T TIGR01578 1 KVYVETYGCTLNNGDSEIMKNSLAAYGHELVNNAEEADLAILNTCTVKNKTEDTMLYRIESLMRNGKHVVVAGCMPQAQK 80 (420)
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHhcCCCEEEECCcCccCh
Confidence 58999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred h-hhcc-cccEEEcCCCHHHHHHHHHHHhcCCceEeecccCCCCCCCCcccCCceEEEEEeCCCCCCCCCCCccCccCCC
Q 006836 140 D-LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217 (629)
Q Consensus 140 e-~~~~-~~d~VvG~~e~~~l~ell~~~~~g~~~~~~~~~~~p~~~lp~~r~~~~~a~V~isrGCp~~CsFC~ip~~rG~ 217 (629)
+ +... +.+.++|+.++..++++++......... .. .....++.|..+.....++|+|+||||++|+||.+|..+|+
T Consensus 81 e~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~isrGC~~~CsfC~ip~~~G~ 158 (420)
T TIGR01578 81 ESVYDNGSVASVLGVQAIDRLVEVVEETLKKKVHG-RR-EAGTPLSLPKPRKNPLIEIIPINQGCLGNCSYCITKHARGK 158 (420)
T ss_pred HHHHhhCCccEEEcCCCHHHHHHHHHHHhcCCccc-cc-ccccccccccccCCCcEEEEEEccCCCCCCCCCccccCCCC
Confidence 7 4433 4567889999999999887764321110 00 00111122333345578999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
+|+||+++|++|++.+++.|+++|+|+|+|++.||.|.+..+.+|++.+.+ ++ +..++|+++++|..+....+++.+
T Consensus 159 ~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~-i~--~~~~ir~~~~~p~~~~~~~~~l~~ 235 (420)
T TIGR01578 159 LASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITE-IP--GEFRLRVGMMNPKNVLEILDELAN 235 (420)
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHh-CC--CCcEEEEcCCCCCcccccCHHHHH
Confidence 999999999999999999999999999999999998866679999988865 54 567899999999765444455666
Q ss_pred HHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d 377 (629)
++..+++|+++|+|+||+|+++|+.|+|+++.+++.++++.+++++||+.+.+|||+||||||++||++|++|+++++++
T Consensus 236 ~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~ 315 (420)
T TIGR01578 236 VYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPE 315 (420)
T ss_pred HHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 66667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeceeCCCCccccCCCCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecCCceEEEEecCCeEEEEC
Q 006836 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP 455 (629)
Q Consensus 378 ~v~i~~ysP~PGTpa~~~~~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~ 455 (629)
.+++|+|+|+||||++.++++|++++++|.+.|++++++ .+.+++++|++++||||+.++++ .+.|++ +|.+|++.
T Consensus 316 ~i~~~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~-~~~~~~-~~~~v~~~ 393 (420)
T TIGR01578 316 KINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQVLLEMRDNLIGTRVHVLVTKEGKGD-SLDDED-AYRQVVIR 393 (420)
T ss_pred EEEEEEeeCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecCCCC-eeeeCC-CCcEEEEc
Confidence 999999999999999999999999999999999999996 46789999999999999754333 456775 99988886
Q ss_pred CCCCCCCCEEEEEEEEEeeceEEEEEE
Q 006836 456 STGNMLGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 456 ~~~~~~G~~v~V~I~~~~~~~l~g~~v 482 (629)
.+...+|++++|+|+++.+++|.|+++
T Consensus 394 ~~~~~~g~~~~v~i~~~~~~~l~g~~~ 420 (420)
T TIGR01578 394 SRTREPGEFAGVEITGAKTAYLIGEII 420 (420)
T ss_pred CCCCCCCCEEEEEEEeeecceEEEEEC
Confidence 443468999999999999999999863
No 16
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=5.3e-76 Score=647.62 Aligned_cols=420 Identities=30% Similarity=0.521 Sum_probs=358.5
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHH---HHHHHHhhCC--CCEEEECc
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD---TLIAKCKSAK--KPLVVAGC 133 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~---~~ir~~k~~~--~~VVVgGc 133 (629)
++|+|+||||++||+|||.|++.|.+.||+++++.++||+++||||||+.+++++++ ..++++++.+ .+||||||
T Consensus 2 ~~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~~~vvv~GC 81 (439)
T PRK14328 2 KKYFIETYGCQMNEEDSEKLAGMLKSMGYERTENREEADIIIFNTCCVRENAENKVFGNLGELKKLKEKNPNLIIGVCGC 81 (439)
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHCcCEECCCcCcCCEEEEecccEechHHHHHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 579999999999999999999999999999999999999999999999999999998 4455555544 46999999
Q ss_pred ccCC--Chh-hh-ccc-ccEEEcCCCHHHHHHHHHHHhcCC-ceEeecccCCCCC-CCCcccCCceEEEEEeCCCCCCCC
Q 006836 134 VPQG--SRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGH-EVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGAC 206 (629)
Q Consensus 134 ~a~~--~~e-~~-~~~-~d~VvG~~e~~~l~ell~~~~~g~-~~~~~~~~~~p~~-~lp~~r~~~~~a~V~isrGCp~~C 206 (629)
|||. .++ +. .++ +|.|+|++++..+++++.....+. .+........+.+ .+|..+.....+||+|+||||++|
T Consensus 82 ~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~rGC~~~C 161 (439)
T PRK14328 82 MMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVKEEGKSVIEIWEKEDGIVEGLPIDRKSKVKAFVTIMYGCNNFC 161 (439)
T ss_pred hhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccCCCcEEEEEHHhCcCCCC
Confidence 9999 665 43 455 578999999999999998776432 2221111111111 223222345678999999999999
Q ss_pred CCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEeecC
Q 006836 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTN 284 (629)
Q Consensus 207 sFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~L~~~i~~~~~~~iri~~~~ 284 (629)
+||++|..+|++|++|+++|++|++.+++.|+++|+|+|+|++.||.|.. ..|.+|++.+.+ ++ +..++|+.+.+
T Consensus 162 sfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~ 238 (439)
T PRK14328 162 TYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNE-ID--GLERIRFMTSH 238 (439)
T ss_pred CCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHh-cC--CCcEEEEecCC
Confidence 99999999999999999999999999999999999999999999997653 468999998875 44 67789998889
Q ss_pred CcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHH
Q 006836 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDF 364 (629)
Q Consensus 285 p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf 364 (629)
|..+++.+ +..+...+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++++|++.+.+|||+||||||++||
T Consensus 239 P~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvG~PgET~ed~ 316 (439)
T PRK14328 239 PKDLSDDL--IEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTDIIVGFPGETEEDF 316 (439)
T ss_pred hhhcCHHH--HHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHH
Confidence 98887655 3334344557999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecC-Cc
Q 006836 365 NQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD-GI 440 (629)
Q Consensus 365 ~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~-~~ 440 (629)
++|++|+++++++.+++|.|+|+||||++.++ ++|++++++|.+.|.++++. .+.+++++|++++||+|+..++ ++
T Consensus 317 ~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vl~e~~~~~~~~ 396 (439)
T PRK14328 317 EETLDLVKEVRYDSAFTFIYSKRKGTPAAKMEDQVPEDVKHERFNRLVELQNKISLEKNKEYEGKIVEVLVEGPSKNDEN 396 (439)
T ss_pred HHHHHHHHhcCCCcccceEecCCCCChhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCc
Confidence 99999999999999999999999999999997 89999999999999999986 4678899999999999975432 23
Q ss_pred eEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEe
Q 006836 441 HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 483 (629)
Q Consensus 441 ~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~ 483 (629)
.+.||+++|.+|+++++...+|++++|+|++++.++|.|++++
T Consensus 397 ~~~g~~~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~ 439 (439)
T PRK14328 397 KLTGRTRTNKLVNFIGDKELIGKLVNVKITKANSFSLTGEVIE 439 (439)
T ss_pred eEEEECCCCeEEEECCCCCCCCCEEEEEEEeeecceEEEEEeC
Confidence 6789999999999975443579999999999999999998763
No 17
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=100.00 E-value=9.8e-76 Score=645.34 Aligned_cols=418 Identities=30% Similarity=0.510 Sum_probs=359.2
Q ss_pred eEEEEecCcccChhhHHHHHHHHHhc-CceeeCCCCCCCEEEEeecccccchHHHHHHHH---HHHhhCC--CCEEEECc
Q 006836 60 TIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSAK--KPLVVAGC 133 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~~L~~~-G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~i---r~~k~~~--~~VVVgGc 133 (629)
+|+|+||||++||+|||.|++.|.+. ||.++++.++||+++||||||+.++++++++.| +++++.+ ++||||||
T Consensus 1 ~~~i~t~GC~~N~~dse~~~~~l~~~~G~~~~~~~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~~~~~~~ivv~GC 80 (438)
T TIGR01574 1 KLFIQTYGCQMNVRDSEHMAALLTAKEGYALTEDAKEADVLLINTCSVREKAEHKVFGELGGFKKLKKKNPDLIIGVCGC 80 (438)
T ss_pred CeEEEeCCCCCcHHHHHHHHHHHHhcCCcEECCCcccCCEEEEeccCeechHHHHHHHHHHHHHHHHhhCCCcEEEEeCc
Confidence 58999999999999999999999999 999999999999999999999999999999988 6666543 56999999
Q ss_pred ccCCChh-hh-ccc-ccEEEcCCCHHHHHHHHHHHhcCCc-eEeecccCCCCC-CCCcccC-CceEEEEEeCCCCCCCCC
Q 006836 134 VPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHE-VRLLHRKKLPAL-DLPKVRR-NKFVEILPINVGCLGACT 207 (629)
Q Consensus 134 ~a~~~~e-~~-~~~-~d~VvG~~e~~~l~ell~~~~~g~~-~~~~~~~~~p~~-~lp~~r~-~~~~a~V~isrGCp~~Cs 207 (629)
|||..++ +. .++ +|.|+|++++..+++++.....+.. .........+.. .+|.... ....++|+++||||++|+
T Consensus 81 ~a~~~~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~Cs 160 (438)
T TIGR01574 81 MASHLGNEIFQRAPYVDFVFGTRNIHRLPQAIKTPLTQKFMVVDIDSDESEVAGYFADFRNEGIYKSFINIMIGCNKFCT 160 (438)
T ss_pred cccccHHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccccCCceeEEeehhcCCCCCCC
Confidence 9999987 44 345 5789999999999999987654432 111111111111 1333222 346789999999999999
Q ss_pred CCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CCCcC---CCHHHHHHHHHHhCCCCCCceEEEeec
Q 006836 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIG---VNLPILLNAIVAELPPDGSTMLRIGMT 283 (629)
Q Consensus 208 FC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~y-g~d~~---~~l~eLL~~L~~~i~~~~~~~iri~~~ 283 (629)
||.+|..+|++|++|+++|++|++.+++.|+++|+|+|+|++.| |.|.. ..|.+||+.|.+ .+ +..|+|+++.
T Consensus 161 fC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~ 237 (438)
T TIGR01574 161 YCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELST-ID--GIERIRFTSS 237 (438)
T ss_pred CCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHh-cC--CceEEEEecC
Confidence 99999999999999999999999999999999999999999999 87642 368999999975 33 6789999989
Q ss_pred CCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH
Q 006836 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 363 (629)
Q Consensus 284 ~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeed 363 (629)
+|..+++.+ +..+.+.+.+|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++++|++.+.+|||+||||||++|
T Consensus 238 ~p~~l~~el--l~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i~~d~IvG~PgEt~ed 315 (438)
T TIGR01574 238 HPLDFDDDL--IEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSISTDIIVGFPGETEED 315 (438)
T ss_pred CcccCCHHH--HHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEeeCEEEeCCCCCHHH
Confidence 998887755 444444555799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecCC-
Q 006836 364 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADG- 439 (629)
Q Consensus 364 f~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~- 439 (629)
|++|++|+++++++.+++|.|+|+||||+++++ ++|++++++|.++|.+++++ .+.+++++|++.+||||+...++
T Consensus 316 ~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~ 395 (438)
T TIGR01574 316 FEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQIPEEIKKRRLQRLQARHNEILDKKMRKQEGKTFKVLVEGLSRNNP 395 (438)
T ss_pred HHHHHHHHHhcCCCeeeeEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccCCCC
Confidence 999999999999999999999999999999998 89999999999999999985 46788999999999999754333
Q ss_pred ceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 006836 440 IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 440 ~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v 482 (629)
..+.|||.+|.+|+|+++....|++++|+|+++.+++|.|+++
T Consensus 396 ~~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 438 (438)
T TIGR01574 396 EELAGRTENNFLVNFEGSEDLIGKFVDVKITNVKRMSLRGEIV 438 (438)
T ss_pred ceEEEECCCCCEEEECCCCCCCCCEEEEEEEeeecCcEEEEEC
Confidence 2578999999999997544358999999999999999999863
No 18
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=6.2e-75 Score=641.77 Aligned_cols=425 Identities=30% Similarity=0.525 Sum_probs=366.1
Q ss_pred CCCCCCCCCceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHH---HHHHhhCC-
Q 006836 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL---IAKCKSAK- 125 (629)
Q Consensus 50 ~~~~~~~~~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~---ir~~k~~~- 125 (629)
+..++.|++++|||+||||+||++|||.|.+.|.+.||++++++++||+|+||||+|+++|++++++. ++++|+.+
T Consensus 12 ~~~~~~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~~iiNTC~v~~~a~~~~~~~i~~~~~~k~~~p 91 (459)
T PRK14338 12 PDRDATPRERRYYVWTVGCQMNVSDSERLEAALQGVGYSPAERPEDADFIVLNSCSVRASAEERILGKLGELQRLKRQRP 91 (459)
T ss_pred cccccCCCCCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeeHHHHHHHHHHHHHHHHHhhCC
Confidence 45578888999999999999999999999999999999999999999999999999999999999977 45555554
Q ss_pred -CCEEEECcccCCChh-h--hccc-ccEEEcCCCHHHHHHHHHHHhcCCceEeecccCCCCCCCCcccCCceEEEEEeCC
Q 006836 126 -KPLVVAGCVPQGSRD-L--KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV 200 (629)
Q Consensus 126 -~~VVVgGc~a~~~~e-~--~~~~-~d~VvG~~e~~~l~ell~~~~~g~~~~~~~~~~~p~~~lp~~r~~~~~a~V~isr 200 (629)
++|||+||+||..++ + ..++ .|.|+|+++++.+++++..... ..+ .|.++....+.....+|++|+|
T Consensus 92 ~~~ivv~GC~a~~~~~~~~~~~~p~vd~v~g~~~~~~i~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~i~I~r 163 (459)
T PRK14338 92 DTRIVLWGCMVGPNNQSIFAERLPMVDHFVSPSAVDEVVALAPNPIY-----QLD---EPALPVADWSHPPVTVHVPIIY 163 (459)
T ss_pred CCEEEEeCCccccChhHhhHhcCCCCcEEECCccHHHHHHHHHhhcc-----ccc---cccccccccCCCceEEEEEccc
Confidence 579999999999986 4 4565 5789999999999998753211 011 1222111112345678999999
Q ss_pred CCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceE
Q 006836 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTML 278 (629)
Q Consensus 201 GCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~L~~~i~~~~~~~i 278 (629)
|||++|+||.+|..+|+.|++|+++|++|++.+.+.|+++|+|+|++++.||.|.. ..+.+|++.+.+ .+ +..++
T Consensus 164 GC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~-~~--gi~~i 240 (459)
T PRK14338 164 GCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHE-IP--GLERL 240 (459)
T ss_pred CCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHh-cC--CcceE
Confidence 99999999999999999999999999999999999999999999999999998752 358899999876 33 56689
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 006836 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (629)
Q Consensus 279 ri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG 358 (629)
|+.+.+|..+++.+ +..+.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||
T Consensus 241 r~~~~~p~~i~~el--l~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~Pg 318 (459)
T PRK14338 241 RFLTSHPAWMTDRL--IHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPG 318 (459)
T ss_pred EEEecChhhcCHHH--HHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCC
Confidence 99888999888765 3333344456999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-C----CCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEE
Q 006836 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K----VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIW 431 (629)
Q Consensus 359 ETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~----v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vl 431 (629)
||++||++|++|+++++++.+++++|+|+||||++.|+ + +|++++++|.+.|.++++. .+.++.++|++++||
T Consensus 319 ET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vl 398 (459)
T PRK14338 319 ETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEMEDDPALAVPPEEKQRRRRALEQLQEQIATERNARFLGQTVEVL 398 (459)
T ss_pred CCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCcCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999998 7 9999999999999999986 467889999999999
Q ss_pred EEEEecCCceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEecccccc
Q 006836 432 ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVD 489 (629)
Q Consensus 432 ve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~~~~ 489 (629)
||+.. ++.+.||+.+|.+|+|+++...+|++++|+|+++..++|.|+++.+.....
T Consensus 399 ve~~~--~~~~~g~~~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~~~~~~ 454 (459)
T PRK14338 399 VEGEA--KGKWRGRTRGNKLVFFSAPGDWTGKLVPVRITHTSPWSLQGELVASDAAAG 454 (459)
T ss_pred EEEcC--CCeEEEECCCCeEEEECCCCCCCCCEEEEEEEEeecCcEEEEEeeccccch
Confidence 99742 235789999999999976444589999999999999999999998866543
No 19
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=100.00 E-value=7e-75 Score=637.43 Aligned_cols=412 Identities=36% Similarity=0.618 Sum_probs=357.6
Q ss_pred eEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCC---CEEEECcccC
Q 006836 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK---PLVVAGCVPQ 136 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~---~VVVgGc~a~ 136 (629)
+|||+||||++|++|||.|.+.|.+.||++++++++||+|+||||||++.++++++++++++++.++ +||||||||+
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~~vvvgGc~a~ 80 (429)
T TIGR00089 1 KVYIETYGCQMNEADSEIMAGLLKEAGYEVTDDPEEADVIIINTCAVREKAEQKVRSRLGELAKLKKKNAKIVVAGCLAQ 80 (429)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecceeechHHHHHHHHHHHHHHhCcCCCEEEEECcccc
Confidence 6899999999999999999999999999999999999999999999999999999999999988776 8999999999
Q ss_pred CChhh--hcc-cccEEEcCCCHHHHHHHHHHHhcCCceEeecccCCCCC-CCCccc-CCceEEEEEeCCCCCCCCCCCcc
Q 006836 137 GSRDL--KEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPINVGCLGACTYCKT 211 (629)
Q Consensus 137 ~~~e~--~~~-~~d~VvG~~e~~~l~ell~~~~~g~~~~~~~~~~~p~~-~lp~~r-~~~~~a~V~isrGCp~~CsFC~i 211 (629)
..|+. ..+ ++|.|+|++++..|++++++.. +.....+.. +.+.+ .+|..+ ....+++|+++||||++|+||.+
T Consensus 81 ~~~ee~~~~~~~vd~vvg~~~~~~~~~~l~~~~-~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~i~~srGC~~~CsfC~~ 158 (429)
T TIGR00089 81 REGEELLKRIPEVDIVLGPQNKERIPEAIESAE-QEKQVVFNI-SKDVYEELPRPRSFGKTRAFLKIQEGCDKFCTYCIV 158 (429)
T ss_pred cCHHHHHhhCCCCCEEECCCCHHHHHHHHHHHh-cCCceeccc-cccchhcccccccCCCeEEEEEHHhCcCCCCCcCce
Confidence 99963 344 4688999999999999998865 322222211 11111 123322 23467899999999999999999
Q ss_pred CccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEeecCCcchh
Q 006836 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289 (629)
Q Consensus 212 p~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~ 289 (629)
|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.|+. ..+.+|+++|.+ ++ +..|+++++.+|..++
T Consensus 159 ~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--g~~~i~~~~~~p~~i~ 235 (429)
T TIGR00089 159 PYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSK-ID--GIERIRFGSSHPDDVT 235 (429)
T ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhc-CC--CCCEEEECCCChhhcC
Confidence 999999999999999999999999999999999999999988753 468999999875 44 6789999988998777
Q ss_pred HHHHHHHHHHh-CCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHH
Q 006836 290 EHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTV 368 (629)
Q Consensus 290 ~~l~el~~l~~-~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl 368 (629)
+.+ .++++ .+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.++++.|++.+.+|||+||||||+++|++|+
T Consensus 236 ~el---l~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl 312 (429)
T TIGR00089 236 DDL---IELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETL 312 (429)
T ss_pred HHH---HHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHH
Confidence 654 34444 34479999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEe-cCCceEEE
Q 006836 369 NLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIA-ADGIHLVG 444 (629)
Q Consensus 369 ~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~-~~~~~~~G 444 (629)
+|+++++++.+++|+|+|+||||+++|+ ++|++++++|.+.|.++++. .+.+++++|++++||||+.+ .+++.++|
T Consensus 313 ~~i~~~~~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~~~~g 392 (429)
T TIGR00089 313 DLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQKEISLEKNKKYVGKTLEVLVEGEEGKKEGELTG 392 (429)
T ss_pred HHHHhcCCCEeeccccCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCCeEEE
Confidence 9999999999999999999999999998 89999999999999999986 46788999999999999732 23346789
Q ss_pred EecCCeEEEECCC--CCCCCCEEEEEEEEEeeceEEE
Q 006836 445 HTKGYVQVLVPST--GNMLGTSALVKITSVGRWSVFG 479 (629)
Q Consensus 445 rt~~y~~V~v~~~--~~~~G~~v~V~I~~~~~~~l~g 479 (629)
|+++|.+|+|+.+ ...+|++++|+|+++..++|.|
T Consensus 393 ~~~~~~~v~~~~~~~~~~~g~~~~v~i~~~~~~~l~g 429 (429)
T TIGR00089 393 RTENYKPVVFEGGVGKNLIGKFVKVKITEAAEYSLIG 429 (429)
T ss_pred ECCCCeEEEECCCCCcCCCCCEEEEEEEecccceeEC
Confidence 9999999999753 2358999999999999999876
No 20
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=100.00 E-value=8.5e-75 Score=637.58 Aligned_cols=413 Identities=25% Similarity=0.432 Sum_probs=352.6
Q ss_pred CCCCceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcc
Q 006836 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCV 134 (629)
Q Consensus 55 ~~~~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~ 134 (629)
+-..++|||+||||+||++|||.|++.|.+.||++++++++||+++||||+|++.|++++++.|+++++.+++|||+||+
T Consensus 4 ~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~aD~ivinTC~v~~~a~~k~~~~i~~~~~~~~~ivv~GC~ 83 (440)
T PRK14862 4 MTAAPKIGFVSLGCPKALVDSERILTQLRAEGYEISPSYDGADLVIVNTCGFIDSAVQESLEAIGEALAENGKVIVTGCL 83 (440)
T ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccccchHHHHHHHHHHHHHhcCCCEEEECCc
Confidence 34456899999999999999999999999999999999999999999999999999999999999998777779999999
Q ss_pred cCCChh-hhc-cc-ccEEEcCCCHHHHHHHHHHHhcCCceEeecccCCCCCCCCcccCCceEEEEEeCCCCCCCCCCCcc
Q 006836 135 PQGSRD-LKE-LE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKT 211 (629)
Q Consensus 135 a~~~~e-~~~-~~-~d~VvG~~e~~~l~ell~~~~~g~~~~~~~~~~~p~~~lp~~r~~~~~a~V~isrGCp~~CsFC~i 211 (629)
|+. ++ +.+ ++ +|.|+|+.++..+++++.......... +.....+... ......+++|++|||||++|+||++
T Consensus 84 a~~-~~~~~~~~~~v~~v~g~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~a~v~isrGCp~~CsFC~i 158 (440)
T PRK14862 84 GAK-EDQIREVHPKVLAVTGPHAYEQVMEAVHEHVPKPHDP-FVDLVPPQGV---KLTPRHYAYLKISEGCNHRCTFCII 158 (440)
T ss_pred ccC-HHHHHhhCCCceEEECCCCHHHHHHHHHHhhcccccc-ccccCcchhc---ccCCCcEEEEEeccCCCCCCccCCc
Confidence 995 54 544 34 567999999999999887653221100 0000000000 0123467899999999999999999
Q ss_pred CccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC------------CCHHHHHHHHHHhCCCCCCceEE
Q 006836 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG------------VNLPILLNAIVAELPPDGSTMLR 279 (629)
Q Consensus 212 p~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~------------~~l~eLL~~L~~~i~~~~~~~ir 279 (629)
|.++|++|+||+++|++|++.+.+.|+++|+|+++|++.||.|.. ..+.+|++.|.+. +. |+|
T Consensus 159 p~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~~~Ll~~l~~~----~~-~~r 233 (440)
T PRK14862 159 PSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRMTDLCEALGEL----GA-WVR 233 (440)
T ss_pred ccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHHHHHHHHHHhc----CC-EEE
Confidence 999999999999999999999999999999999999999987631 3588888888753 34 899
Q ss_pred EeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Q 006836 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359 (629)
Q Consensus 280 i~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGE 359 (629)
+.+++|..+.+ +++++++.+++++++|||+||+|+++|+.|+|+++.+++.++++.++++.|++.+.++||+|||||
T Consensus 234 ~~~~~p~~~~d---ell~~m~~g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPgE 310 (440)
T PRK14862 234 LHYVYPYPHVD---EVIPLMAEGKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREICPDLTIRSTFIVGFPGE 310 (440)
T ss_pred EecCCCCcCCH---HHHHHHhcCCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCCCceecccEEEECCCC
Confidence 98888876554 345555556667799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEe
Q 006836 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIA 436 (629)
Q Consensus 360 Teedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~ 436 (629)
|+++|++|++|+++++++.+++|.|+|+||||++.|+ ++|++++++|.++|.+++++ .+.+++++|++++||||+..
T Consensus 311 T~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlie~~~ 390 (440)
T PRK14862 311 TEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEVKEERWARFMEVQQQISAARLQRKVGRTLQVLIDEVD 390 (440)
T ss_pred CHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEcC
Confidence 9999999999999999999999999999999999998 89999999999999999986 56788999999999999764
Q ss_pred cCCceEEEEecCCeE-----EEECCCCC-CCCCEEEEEEEEEeeceEEEEEE
Q 006836 437 ADGIHLVGHTKGYVQ-----VLVPSTGN-MLGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 437 ~~~~~~~Grt~~y~~-----V~v~~~~~-~~G~~v~V~I~~~~~~~l~g~~v 482 (629)
+++ ++||+++|.+ |++..... .+|++++|+|+++.+++|+|+++
T Consensus 391 ~~~--~~Gr~~~~~~~v~~~v~~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 440 (440)
T PRK14862 391 EEG--AIGRSKADAPEIDGVVYLNGETGLKVGDIVRVKITDADEYDLWGEVV 440 (440)
T ss_pred CCC--eEEECcccCccCCCceeccCCCCCCCCCEEEEEEEEeeCCcEEEEEC
Confidence 444 5899999998 88764332 47999999999999999999864
No 21
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=100.00 E-value=2.1e-74 Score=633.76 Aligned_cols=413 Identities=27% Similarity=0.469 Sum_probs=351.8
Q ss_pred eEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCCCh
Q 006836 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~~~ 139 (629)
+|||+||||+|||+|||.|++.|.+.||+++++.++||+|+||||+||..++++++++++++++++++||||||||+..|
T Consensus 1 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~viinTC~v~~~a~~~~~~~i~~~~~~~~~vvvgGc~a~~~p 80 (430)
T TIGR01125 1 KIGFISLGCPKNLVDSEVMLGILREAGYEVTPNYEDADYVIVNTCGFIEDARQESIDTIGELADAGKKVIVTGCLVQRYK 80 (430)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCCCccchHHHHHHHHHHHHHhcCCCEEEECCccccch
Confidence 58999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred h-h-hccc-ccEEEcCCCHHHHHHHHHHHhcCCceEeecccCCCCCCCCccc-CCceEEEEEeCCCCCCCCCCCccCccC
Q 006836 140 D-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHAR 215 (629)
Q Consensus 140 e-~-~~~~-~d~VvG~~e~~~l~ell~~~~~g~~~~~~~~~~~p~~~lp~~r-~~~~~a~V~isrGCp~~CsFC~ip~~r 215 (629)
+ + ..++ +|.|+|+..+..+++.+............. ..+....|... .+..+++|+++||||++|+||.+|..+
T Consensus 81 ee~~~~~~~vd~v~g~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~srGC~~~CsfC~~~~~~ 158 (430)
T TIGR01125 81 EELKEEIPEVHAITGSGDVENILNAIESREPGDKIPFKS--EIEMGEVPRILLTPRHYAYLKVAEGCNRRCAFCIIPSIR 158 (430)
T ss_pred HHHHhhCCCCcEEECCCCHHHHHHHHHHHhccCCccccc--ccccccccccccCCCeEEEEEEccCCCCCCCcCCeeccc
Confidence 7 3 3354 678999988777776665543221111000 01000112211 224578999999999999999999999
Q ss_pred CCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHH
Q 006836 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (629)
Q Consensus 216 G~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~--~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~ 293 (629)
|++|+||+++|++|++.+++.|+++|+|+|+|++.||.|. ...+.+|++.|.+ +. +..|+|+.+++|..+++.+
T Consensus 159 G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~-~~--~i~~~r~~~~~p~~~~~el- 234 (430)
T TIGR01125 159 GKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGK-VG--GIYWIRMHYLYPDELTDDV- 234 (430)
T ss_pred CCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHh-cC--CccEEEEccCCcccCCHHH-
Confidence 9999999999999999999999999999999999998764 2578999999976 43 4679999889998887654
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 006836 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (629)
Q Consensus 294 el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~ 373 (629)
+..+.+.+++|+++|+|+||+|+++|+.|+|+++.+++.++++.++++.|++.+.++||+||||||+++|++|++|+++
T Consensus 235 -l~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~~ 313 (430)
T TIGR01125 235 -IDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFVEE 313 (430)
T ss_pred -HHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHHHHh
Confidence 3333344457899999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred cCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecC-CceEEEEecCC
Q 006836 374 YKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD-GIHLVGHTKGY 449 (629)
Q Consensus 374 l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~-~~~~~Grt~~y 449 (629)
++++.+++|+|+|+||||+++++ ++|++++++|.++|.++++. .+.+++++|++++||+|+.+++ ++.+.||+++|
T Consensus 314 ~~~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vl~e~~~~~~~~~~~g~~~~~ 393 (430)
T TIGR01125 314 GQFDRLGAFTYSPEEGTDAFALPDQVPEEVKEERLERLMQLQQRISAKKNQEFVGKKIEVLIDGYEPETNLLLIGRTYGQ 393 (430)
T ss_pred cCCCEEeeeeccCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccCCCCCcEEEECccC
Confidence 99999999999999999999998 89999999999999999885 4678899999999999975433 23578999999
Q ss_pred eE-----EEECCC--CCCCCCEEEEEEEEEeeceEEE
Q 006836 450 VQ-----VLVPST--GNMLGTSALVKITSVGRWSVFG 479 (629)
Q Consensus 450 ~~-----V~v~~~--~~~~G~~v~V~I~~~~~~~l~g 479 (629)
.+ |+|+++ ...+|++++|+|+++..++|.|
T Consensus 394 ~~~~~~~v~~~~~~~~~~~g~~~~v~i~~~~~~~l~g 430 (430)
T TIGR01125 394 APEVDGVVYVNGAKLNVKIGDILRVVITGTDEYDLWG 430 (430)
T ss_pred CcccCceEEEcCCcccCCCCCEEEEEEEEcccCeeeC
Confidence 97 788754 2248999999999999999976
No 22
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.9e-74 Score=629.95 Aligned_cols=404 Identities=28% Similarity=0.500 Sum_probs=348.1
Q ss_pred cChhhHHHHHHHHH-hcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhh---CCCCEEEECcccCCChh-h-hc
Q 006836 70 HNQSDSEYMAGQLS-AFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS---AKKPLVVAGCVPQGSRD-L-KE 143 (629)
Q Consensus 70 ~N~~dse~m~~~L~-~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~---~~~~VVVgGc~a~~~~e-~-~~ 143 (629)
||++|||.|++.|. +.||++++++++||+++||||||+++|++++++.|+++++ ++++|||+||+|+..++ + ..
T Consensus 1 ~N~~dse~~~~~l~~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~ivv~GC~a~~~~~~~~~~ 80 (420)
T PRK14339 1 MNVRDSEHMIAELSQKEDYKLTQDIKEADLILINTCSVREKPVHKLFSEIGQFNKIKKEGAKIGVCGCTASHLGEEIIKR 80 (420)
T ss_pred CCHHHHHHHHHHHhhcCCcEECCCcccCCEEEEeccCccchHHHHHHHHHHHHHHhhCCCCeEEEECCccccCCHHHHhh
Confidence 79999999999999 5899999999999999999999999999999999998864 35679999999999885 4 35
Q ss_pred cc-ccEEEcCCCHHHHHHHHHHHhcCCceEeecccCCCCCCCCcccCCceEEEEEeCCCCCCCCCCCccCccCCCcCCCC
Q 006836 144 LE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222 (629)
Q Consensus 144 ~~-~d~VvG~~e~~~l~ell~~~~~g~~~~~~~~~~~p~~~lp~~r~~~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~ 222 (629)
++ +|.|+|+.++..+++++..... .... .... -..+..+..+.....++|+++||||++|+||++|.++|+.+++|
T Consensus 81 ~~~vd~v~g~~~~~~i~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~ 157 (420)
T PRK14339 81 APYVDFVLGARNVSKISQVIHTPKA-VEVD-IDYD-ESTYAFADFRKSPYKSLVNISIGCDKKCTYCIVPHTRGKEISIP 157 (420)
T ss_pred CCCCcEEECCCCHHHHHHHHHhhcc-ccee-cccc-ccccccccccCCCeEEEEEecCCCCCCCCcCCcccccCCCCCCC
Confidence 65 5789999999999998875311 1111 1000 00111122223456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-----CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 223 ~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-----~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
+++|++|++.+++.|+++|+|+|+|++.||.|.. ..|.+||+.+.+ ++ +..|+|+++++|..+++.+ +..
T Consensus 158 ~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~-~~--g~~~ir~~s~~p~~~~~el--l~~ 232 (420)
T PRK14339 158 MDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSE-IE--GLERIRFTSPHPLHMDDKF--LEE 232 (420)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhc-CC--CccEEEECCCChhhcCHHH--HHH
Confidence 9999999999999999999999999999998742 358999999875 44 6789999989998887755 444
Q ss_pred HHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d 377 (629)
+.+.+.+|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++++|++.+.+|||+||||||++||++|++|+++++++
T Consensus 233 ~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~ 312 (420)
T PRK14339 233 FAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRFE 312 (420)
T ss_pred HHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 44455579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecCCceEEEEecCCeEEEE
Q 006836 378 QVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 454 (629)
Q Consensus 378 ~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v 454 (629)
.+++|+|+|+||||+++|+ ++|++++++|.++|.++++. .+.+++++|++++||||+..+++ .+.|||.+|.+|+|
T Consensus 313 ~~~~f~~sp~pGT~a~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~-~~~g~t~~~~~v~~ 391 (420)
T PRK14339 313 QIFSFKYSPRPLTEAAAWKNQVDEEVASERLERLQNRHKEILDEIAKKEVGKTHVVLFEELRANG-GVAGRSDNNKLVQV 391 (420)
T ss_pred EEeeEecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCC-eEEEECCCCeEEEE
Confidence 9999999999999999998 89999999999999999995 56789999999999999754333 67899999999999
Q ss_pred CCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 006836 455 PSTGNMLGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 455 ~~~~~~~G~~v~V~I~~~~~~~l~g~~v 482 (629)
+.+...+|++++|+|+++.+++|.|+++
T Consensus 392 ~~~~~~~G~~~~v~i~~~~~~~l~g~~~ 419 (420)
T PRK14339 392 KGSEELLGEFVKVKITNASRGVLYGEIV 419 (420)
T ss_pred CCCCCCCCCEEEEEEEeeecCcEEEEEC
Confidence 7544358999999999999999999875
No 23
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.5e-73 Score=628.07 Aligned_cols=419 Identities=28% Similarity=0.467 Sum_probs=355.5
Q ss_pred eEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCC----CCEEEECccc
Q 006836 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCVP 135 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~----~~VVVgGc~a 135 (629)
+|||+||||++|++|||.|.+.|.+.||++++++++||+++||||+|+++|++++++.++++++.+ .+|+|+||+|
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADi~iiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~v~v~GC~a 81 (440)
T PRK14334 2 KAHIITYGCQMNEYDTHLVESELVSLGAEIVDSVDEADFVLVNTCAVRGKPVEKVRSLLGELRKEKAQRPLVVGMMGCLA 81 (440)
T ss_pred eEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeehHHHHHHHHHHHHHhhCcCCCcEEEEEcchh
Confidence 799999999999999999999999999999999999999999999999999999999999887543 3488999999
Q ss_pred CCCh-h-hhcc-cccEEEcCCCHHHHHHHHHHHhcCCceEeecccCCCCCCCCcccCCceEEEEEeCCCCCCCCCCCccC
Q 006836 136 QGSR-D-LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 212 (629)
Q Consensus 136 ~~~~-e-~~~~-~~d~VvG~~e~~~l~ell~~~~~g~~~~~~~~~~~p~~~lp~~r~~~~~a~V~isrGCp~~CsFC~ip 212 (629)
+.++ + +... ..|.|+|++++..+++++..... ..........+. .+|........++|+|++|||++|+||.+|
T Consensus 82 ~~~~~~~l~~~~~vd~v~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~l~isrGC~~~CsfC~~p 158 (440)
T PRK14334 82 QLEEGQQMARKFGVDVLLGPGALTDIGKALEANER--FWGLQFKDELHD-HIPPPPQGKLSAHLTIMRGCNHHCTYCIVP 158 (440)
T ss_pred ccCChhHHhcCCCCCEEECCCCHHHHHHHHHhhcc--cccccccccccc-ccccccCCCeEEEEEeccCCCCCCcCCCcc
Confidence 9984 3 4444 56789999999898888764311 000000011100 123223446789999999999999999999
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhH
Q 006836 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290 (629)
Q Consensus 213 ~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~ 290 (629)
..+|+.+++++++|++|++.+.+.|+++|+|+|+|++.||.+.. .++.+|++.+.+ + +..++++.+.+|..+++
T Consensus 159 ~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~-~---~i~~ir~~~~~p~~i~~ 234 (440)
T PRK14334 159 TTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGA-S---GIPRVKFTTSHPMNFTD 234 (440)
T ss_pred hhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHh-c---CCcEEEEccCCcccCCH
Confidence 99999999999999999999999999999999999999987643 468899998864 3 45689998889988877
Q ss_pred HHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Q 006836 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 370 (629)
Q Consensus 291 ~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~f 370 (629)
.+ +..+.+.+.+|+++|+|+||+|+++|+.|+|+|+.+++.++++.++++.|++.+.+|||+||||||++||++|++|
T Consensus 235 el--l~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~ 312 (440)
T PRK14334 235 DV--IAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSL 312 (440)
T ss_pred HH--HHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHH
Confidence 54 3334344456999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecCCceEEEEec
Q 006836 371 IKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVGHTK 447 (629)
Q Consensus 371 l~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt~ 447 (629)
+.+++++.+++|.|+|+||||+++++ ++|++++++|.++|.+++++ .+.+++++|++++||||+.+++++.++|||+
T Consensus 313 i~~l~~~~i~~f~ysp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~~~g~t~ 392 (440)
T PRK14334 313 YDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVKTERLQRLIEKQKEWSYRRNARWVGRTQEVLVRGDAKDAGFLEGHTR 392 (440)
T ss_pred HHhcCCCEeeeeEeeCCCCChhHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccCCCCeEEEECC
Confidence 99999999999999999999999986 89999999999999999996 5678999999999999975444346789999
Q ss_pred CCeEEEECCCCC-CCCCEEEEEEEEEeeceEEEEEEeccccc
Q 006836 448 GYVQVLVPSTGN-MLGTSALVKITSVGRWSVFGEVIKILNQV 488 (629)
Q Consensus 448 ~y~~V~v~~~~~-~~G~~v~V~I~~~~~~~l~g~~v~~~~~~ 488 (629)
+|.+|+|+.+.. ..| +++|+|+++.+++|.|+++....+.
T Consensus 393 ~~~~v~~~~~~~~~~g-~~~v~i~~~~~~~l~g~~~~~~~~~ 433 (440)
T PRK14334 393 GNHPVLVPASQAPGPG-LYQVRIKQATPHMLYGEVVGAEAPA 433 (440)
T ss_pred CCcEEEEcCCCcccCc-EEEEEEEEccCceEEEEEecCCCcc
Confidence 999999975332 345 9999999999999999998775443
No 24
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=100.00 E-value=1.6e-73 Score=623.90 Aligned_cols=399 Identities=32% Similarity=0.564 Sum_probs=343.8
Q ss_pred EEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEECcccCCChh
Q 006836 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQGSRD 140 (629)
Q Consensus 63 i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VVVgGc~a~~~~e 140 (629)
|+||||++|++|||.|++.|.+.||+.++++++||+|+||||||+..++++++++++++|+.+ ++||||||||+..|+
T Consensus 1 ~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~~~e 80 (414)
T TIGR01579 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQSNPK 80 (414)
T ss_pred CEeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccccCHH
Confidence 589999999999999999999999999999999999999999999999999999999998877 569999999999997
Q ss_pred -hhccc-ccEEEcCCCHHHHHHHHHHHhcCCceEee-----cccCCCCCCCCcccCCceEEEEEeCCCCCCCCCCCccCc
Q 006836 141 -LKELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLL-----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213 (629)
Q Consensus 141 -~~~~~-~d~VvG~~e~~~l~ell~~~~~g~~~~~~-----~~~~~p~~~lp~~r~~~~~a~V~isrGCp~~CsFC~ip~ 213 (629)
+...+ +|.|+|++++..|+++++....+...... ....+|.+++..+ .....++|+++||||++|+||.+|.
T Consensus 81 e~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~i~isrGCp~~CsfC~~~~ 159 (414)
T TIGR01579 81 ELADLKDVDLVLGNKEKDKINKLLSLGLKTSFYRVKNKNFSREKGVPEYEEVAF-EGHTRAFIKVQDGCNFFCSYCIIPF 159 (414)
T ss_pred HHhcCCCCcEEECCCCHHHHHHHHHHHhcccCcccccccccccccccccccccc-CCCeEEEEEeccCcCCCCCCCceee
Confidence 44554 57899999999999999865443221111 1111222222111 2245789999999999999999999
Q ss_pred cCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHH
Q 006836 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (629)
Q Consensus 214 ~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~--~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~ 291 (629)
.+|++|+||+++|++|++.+.+.|+++|+|+|+|++.|+.|. ...+.+|++.+.+ ++ +..|+|+++++|..+++.
T Consensus 160 ~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~~~~e 236 (414)
T TIGR01579 160 ARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQ-IP--GIKRIRLSSIDPEDIDEE 236 (414)
T ss_pred ecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhc-CC--CCcEEEEeCCChhhCCHH
Confidence 999999999999999999999999999999999999999774 3578999999875 44 678999999999887765
Q ss_pred HHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHH
Q 006836 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 371 (629)
Q Consensus 292 l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl 371 (629)
+ +..+.+.+++|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||||++||++|++|+
T Consensus 237 l--l~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i 314 (414)
T TIGR01579 237 L--LEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMV 314 (414)
T ss_pred H--HHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHH
Confidence 4 33333345679999999999999999999999999999999999999778999999999999999999999999999
Q ss_pred HhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCCcEEEEEEEEEecCCceEEEEecC
Q 006836 372 KEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVGHTKG 448 (629)
Q Consensus 372 ~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt~~ 448 (629)
++++++.+++|+|+|+||||+++++ ++|..++++|.++|+++++. .+.+++++|++++||||+.. ++ .+.||+++
T Consensus 315 ~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~-~~-~~~g~~~~ 392 (414)
T TIGR01579 315 KEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAEKNYQEFLKKNIGKELEVLVEKEK-AG-VLTGYSEY 392 (414)
T ss_pred HhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCC-CC-eeEEECCC
Confidence 9999999999999999999999998 89999999999999999986 56789999999999999742 33 57899999
Q ss_pred CeEEEECCC-CCCCCCEEEEEE
Q 006836 449 YVQVLVPST-GNMLGTSALVKI 469 (629)
Q Consensus 449 y~~V~v~~~-~~~~G~~v~V~I 469 (629)
|.+|+|+.+ ....|++++|+|
T Consensus 393 ~~~v~~~~~~~~~~g~~~~v~i 414 (414)
T TIGR01579 393 YLKVKVESDKGVAAGELISVRI 414 (414)
T ss_pred CcEEEeCCCCccCCCCEEEEEC
Confidence 999999754 235799999986
No 25
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-58 Score=473.74 Aligned_cols=425 Identities=25% Similarity=0.430 Sum_probs=360.4
Q ss_pred CCCCCceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhC----C----
Q 006836 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----K---- 125 (629)
Q Consensus 54 ~~~~~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~----~---- 125 (629)
......|||++||||+||..|+|.+..+|.+.||-.++.+++||+|+++||++++.||+++++.++.+|.. .
T Consensus 68 l~g~gRkv~~etYGCQMNvnD~Eiv~sIl~~~Gy~~~~~~e~Advill~TCsiRe~AEq~iwnrL~~~ra~k~~~~~~rp 147 (552)
T KOG2492|consen 68 LLGNGRKVYLETYGCQMNVNDTEIVWSILKKSGYLRSDKPEEADVILLVTCSIREGAEQRIWNRLKLLRALKVNRPTSRP 147 (552)
T ss_pred hccCCcEEEEEEeeeeeccchHHHHHHHHHhcCccccCCcccCcEEEEEEeeccccHHHHHHHHHHHHHHhhccCccCCC
Confidence 33446789999999999999999999999999999999999999999999999999999999988765432 1
Q ss_pred CCEEEECcccCCChh-h-h-cccccEEEcCCCHHHHHHHHHHHhcCCceE---eecccCCCCCCCCc-ccCCceEEEEEe
Q 006836 126 KPLVVAGCVPQGSRD-L-K-ELEGVSIVGVQQIDRVVEVVEETLKGHEVR---LLHRKKLPALDLPK-VRRNKFVEILPI 198 (629)
Q Consensus 126 ~~VVVgGc~a~~~~e-~-~-~~~~d~VvG~~e~~~l~ell~~~~~g~~~~---~~~~~~~p~~~lp~-~r~~~~~a~V~i 198 (629)
.+|.|-||||++..+ + . +--+|.|.|++.+..+|.+|.-...|..-. +.-...+.+.. |. .......|||.|
T Consensus 148 l~v~vLGCMAERlk~~iL~~~kmVdivaGPDaYrDLPrll~~~~~g~~~in~~Lsldetyadv~-pvr~~~~s~tAFvSi 226 (552)
T KOG2492|consen 148 LRVGVLGCMAERLKEKILEREKMVDIVAGPDAYRDLPRLLAVARGGQNGINVLLSLDETYADVQ-PVRVSSSSTTAFVSI 226 (552)
T ss_pred ceEEeehhhHHHHHHHHhhhhhceeeeeCchhhhhhHHHHHHHhccCCceeEEEeccchhcccc-eeeccCccchhHHHH
Confidence 257888999999875 3 2 224678899999999999988776665321 11112222211 22 134567899999
Q ss_pred CCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-----------------------
Q 006836 199 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----------------------- 255 (629)
Q Consensus 199 srGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~----------------------- 255 (629)
+|||++-|+||++|+.||+.|+||++.|++|++.|.++|+|++.|.|+|+++|..+.
T Consensus 227 MRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K 306 (552)
T KOG2492|consen 227 MRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPK 306 (552)
T ss_pred HhccccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCCceeeeccc
Confidence 999999999999999999999999999999999999999999999999999996531
Q ss_pred --CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHH
Q 006836 256 --GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333 (629)
Q Consensus 256 --~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~ 333 (629)
+..|+.||+.+....| ..++||.+.||.++.+++-++ +...+.+|+.+|+|.|||+.++|+.|.|||+.+.|.
T Consensus 307 ~gGl~Fa~LLd~vs~~~P---emR~RFTSPHPKDfpdevl~l--i~~rdnickqihlPAqSgds~vLE~mrRgysreayl 381 (552)
T KOG2492|consen 307 QGGLRFAHLLDQVSRADP---EMRIRFTSPHPKDFPDEVLEL--IRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYL 381 (552)
T ss_pred CCCccHHHHHHHHhhhCc---ceEEEecCCCCCCChHHHHHH--HHhCcchhheeeccccCCchHHHHHHHccCChHhhh
Confidence 2369999999988664 568888888998888766333 445678899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccC-C-CCCHHHHHHHHHHHH
Q 006836 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K-KVPSAVVKKRSRELT 411 (629)
Q Consensus 334 e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~-~-~v~~~~~~~R~~~L~ 411 (629)
+.+..+++.+||+.+..|||.||-|||++|+++|+.++++.+.+.++.|.|+-+.+|.++.- . ++|++++.+|..+|.
T Consensus 382 ~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVKnrrl~~Li 461 (552)
T KOG2492|consen 382 ELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRRLFELI 461 (552)
T ss_pred hHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999864 4 899999999999999
Q ss_pred HHHHH--hcccccCCCcEEEEEEEEEecC-CceEEEEecCCeEEEECC--------C----CCCCCCEEEEEEEEEeece
Q 006836 412 SVFEA--FTPYLGMEGRVERIWITEIAAD-GIHLVGHTKGYVQVLVPS--------T----GNMLGTSALVKITSVGRWS 476 (629)
Q Consensus 412 ~l~~~--~~~~~~~vG~~~~Vlve~~~~~-~~~~~Grt~~y~~V~v~~--------~----~~~~G~~v~V~I~~~~~~~ 476 (629)
.+|+. ...++.++|.+.-|++|+.++. ...++|+++.|..|.|+. + ...+|+++.|+|+.+....
T Consensus 462 ~~Fre~A~~~~d~lvgc~Qlvlveg~sKrs~t~~~gr~d~~~kv~f~~a~~~~~~~~~~r~~~~igd~~~v~i~~a~~~~ 541 (552)
T KOG2492|consen 462 TFFREEAIKFNDGLVGCTQLVLVEGKSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAGPGDYVLVKITDSNSQT 541 (552)
T ss_pred HHHHHHHHHHhccCccccceeeeechhhhhHHHHhcccCCCeEEEechHhhcCCCCCCceeccCcccceeeeeehhhhhh
Confidence 99985 4678999999999999998643 235789999999999871 1 1257999999999999998
Q ss_pred EEEEEEec
Q 006836 477 VFGEVIKI 484 (629)
Q Consensus 477 l~g~~v~~ 484 (629)
|+|..+..
T Consensus 542 l~g~~lai 549 (552)
T KOG2492|consen 542 LKGQLLGQ 549 (552)
T ss_pred hhcchhhc
Confidence 88877654
No 26
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=100.00 E-value=8.5e-36 Score=333.35 Aligned_cols=306 Identities=18% Similarity=0.237 Sum_probs=228.4
Q ss_pred hhHHHHHHHHHhcC-cee--eCC---------------CCCCCEEEEeecccccchHHHHHHHHHHHhhC--CCCEEEEC
Q 006836 73 SDSEYMAGQLSAFG-YAL--TDN---------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAG 132 (629)
Q Consensus 73 ~dse~m~~~L~~~G-~~~--~~~---------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VVVgG 132 (629)
.-..++++.|++.| |++ .|. ...+|+|+|+ |. ++....++++++.+|+. +.+||+||
T Consensus 23 lgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgis-~~--t~~~~~a~~~~~~~k~~~P~~~iV~GG 99 (497)
T TIGR02026 23 LWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLIT-AI--TPAIYIACETLKFARERLPNAIIVLGG 99 (497)
T ss_pred HHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcCcCEEEEe-cC--cccHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 34689999999999 553 221 2368999994 33 23345667777777765 67899999
Q ss_pred cccCCChh--hhcc-cccE-EEcCCCHHHHHHHHHHHhcCC---ce---E--ee-------c---ccCC-------CCCC
Q 006836 133 CVPQGSRD--LKEL-EGVS-IVGVQQIDRVVEVVEETLKGH---EV---R--LL-------H---RKKL-------PALD 183 (629)
Q Consensus 133 c~a~~~~e--~~~~-~~d~-VvG~~e~~~l~ell~~~~~g~---~~---~--~~-------~---~~~~-------p~~~ 183 (629)
+||+..|+ +... ..|+ |+|++| ..++++++....|. .. + .+ . ...+ |+++
T Consensus 100 ~h~t~~~~~~l~~~p~vD~Vv~GEGE-~~~~~Ll~~l~~g~~~~~~~~I~Gi~y~~~g~i~~~~~~~~i~dLd~~~P~~~ 178 (497)
T TIGR02026 100 IHPTFMFHQVLTEAPWIDFIVRGEGE-ETVVKLIAALENHNFAEDRNKVDGIAFLRDQEIVETLAAPMIQDLDVYRPDWE 178 (497)
T ss_pred CCcCcCHHHHHhcCCCccEEEeCCcH-HHHHHHHHHHHcCCCCCchhhCCceEEEeCCEEEeCCCCCCccccccCCCCcc
Confidence 99999986 3344 3687 667776 68999998877664 11 0 00 0 0001 1111
Q ss_pred CC---cccC---CceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcC
Q 006836 184 LP---KVRR---NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIG 256 (629)
Q Consensus 184 lp---~~r~---~~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~-~GvkeI~L~g~d~~~yg~d~~ 256 (629)
+. .+.. ....+.+++|||||++|+||..+...+++|.++++.|++||+.+.+ .|++.|.|.|++++...
T Consensus 179 l~~~~~y~~~~~~~~~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~---- 254 (497)
T TIGR02026 179 LVDWKKYIYYPLGVRVAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINR---- 254 (497)
T ss_pred cCchhhcccccCCCceeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCH----
Confidence 10 0100 1234568999999999999999887788999999999999999976 69999999998765432
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEe-ecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHH
Q 006836 257 VNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335 (629)
Q Consensus 257 ~~l~eLL~~L~~~i~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~ 335 (629)
..+.+++++|.+.-+ ..+++. +++++.+... +++.++++.++ |.++.+|+||+|+++|+.|+|+++.+++.++
T Consensus 255 ~~~~~l~~~l~~~~~----l~i~w~~~~r~~~i~~d-~ell~~l~~aG-~~~v~iGiES~~~~~L~~~~K~~t~~~~~~a 328 (497)
T TIGR02026 255 KKFQEFCEEIIARNP----ISVTWGINTRVTDIVRD-ADILHLYRRAG-LVHISLGTEAAAQATLDHFRKGTTTSTNKEA 328 (497)
T ss_pred HHHHHHHHHHHhcCC----CCeEEEEecccccccCC-HHHHHHHHHhC-CcEEEEccccCCHHHHHHhcCCCCHHHHHHH
Confidence 246788888875311 123332 3455544221 23455555555 8999999999999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccc
Q 006836 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (629)
Q Consensus 336 I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~ 394 (629)
++.++++ |+.+.++||+|+||||.+++++|++++.+++++.++++.|+|+||||+++
T Consensus 329 i~~l~~~--Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~ 385 (497)
T TIGR02026 329 IRLLRQH--NILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPFTSLFG 385 (497)
T ss_pred HHHHHHC--CCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCCcHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999975
No 27
>PRK00955 hypothetical protein; Provisional
Probab=100.00 E-value=9.8e-35 Score=325.15 Aligned_cols=200 Identities=21% Similarity=0.323 Sum_probs=160.8
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCCCc-CCCCHHHHHHHHHHHHHC-CCcEEE--EeecCCCCCCCCc------------
Q 006836 192 FVEILPINVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIAD-GVKEVW--LSSEDTGAYGRDI------------ 255 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG~~-Rsr~~e~Iv~Ei~~l~~~-GvkeI~--L~g~d~~~yg~d~------------ 255 (629)
..++|.++|||+++|+||+++.++|+. +|||+++|++|++.+.+. |+++++ +.|++.+.||.+.
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 457899999999999999999999985 999999999999999987 899875 6678899998420
Q ss_pred --------------CCCHHHHHHHHHHhCCCCCCceEEEee-cCCcchhH-HH-HHHHHHHhCCCcccccccccCCCCHH
Q 006836 256 --------------GVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFILE-HL-KEIAEVLRHPCVYSFLHVPVQSGSDA 318 (629)
Q Consensus 256 --------------~~~l~eLL~~L~~~i~~~~~~~iri~~-~~p~~i~~-~l-~el~~l~~~~~~~~~l~IGlESgsd~ 318 (629)
...+.+||++|.+ ++ ++.|+++++ ++.+.+.. .. +.+.++... .++.+||||+||+|++
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~-l~--gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~-~vsg~L~IapESgSd~ 447 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRK-LP--GVKKVFIRSGIRYDYLLHDKNDEFFEELCEH-HVSGQLKVAPEHISDR 447 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhc-cC--CceEEEeecceeccccccCCcHHHHHHHHHH-hcCCCceeCcCCCChH
Confidence 1258899999965 55 777877776 34433211 00 012333333 3467999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhCCC----CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccc
Q 006836 319 VLSAMNREYTLSDFRTVVDTLIELVPG----MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (629)
Q Consensus 319 vLk~M~R~~t~e~~~e~I~~lr~~~pg----i~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~ 394 (629)
+|+.|+|+ +.+.+.+.++.+++..+. ..+.++||+||||||++||++|++|+++++++.++++.|+|+|||+++.
T Consensus 448 VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PGT~At~ 526 (620)
T PRK00955 448 VLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGTLSTT 526 (620)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCCcchhh
Confidence 99999998 667777777666665544 3599999999999999999999999999999999999999999999998
Q ss_pred CC
Q 006836 395 MK 396 (629)
Q Consensus 395 ~~ 396 (629)
|.
T Consensus 527 My 528 (620)
T PRK00955 527 MY 528 (620)
T ss_pred cc
Confidence 85
No 28
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=100.00 E-value=3.3e-34 Score=318.95 Aligned_cols=280 Identities=20% Similarity=0.228 Sum_probs=204.0
Q ss_pred CCCCEEEEeecccccchHHHHHHHHHHHhhC--CCCEEEECcccCCChh--hhcc-cccE-EEcCCCHHHHHHHHHHHhc
Q 006836 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRD--LKEL-EGVS-IVGVQQIDRVVEVVEETLK 167 (629)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VVVgGc~a~~~~e--~~~~-~~d~-VvG~~e~~~l~ell~~~~~ 167 (629)
.++|+|+|+|+|... ..+.++++.+|+. +++||+||+|++..|+ +... ..|. |.|+++ ..++++++....
T Consensus 67 ~~~Dlv~is~~t~~~---~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE-~~l~~l~~g~~~ 142 (472)
T TIGR03471 67 KDYDLVVLHTSTPSF---PSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFD-YTIKEVAEGKPL 142 (472)
T ss_pred cCCCEEEEECCCcch---HHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchH-HHHHHHHcCCCh
Confidence 468999998776554 3456677777765 5689999999999997 3333 3576 556665 578887653210
Q ss_pred ------------CCce--------EeecccCCCC----CCCCc--cc---CCceEEEEEeCCCCCCCCCCCccCccC-C-
Q 006836 168 ------------GHEV--------RLLHRKKLPA----LDLPK--VR---RNKFVEILPINVGCLGACTYCKTKHAR-G- 216 (629)
Q Consensus 168 ------------g~~~--------~~~~~~~~p~----~~lp~--~r---~~~~~a~V~isrGCp~~CsFC~ip~~r-G- 216 (629)
|... ..++..|+|+ .+++. +. .....+.|+++||||++|+||.++... |
T Consensus 143 ~~i~Gi~~r~~~g~~~~~~~~~~~~dLd~lP~p~p~~~~~l~~~~y~~~~~~~~~~~i~tsRGCp~~C~FC~~~~~~~g~ 222 (472)
T TIGR03471 143 AEIDGLSYRGKDGKIVHNPDRPMIEDMDALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWPQTVGGH 222 (472)
T ss_pred hcCCceEEEcCCCeEEeCCCCCCccchhhCCCCchhhhccCCHHHcccccccCceEEEEecCCCCCCCCCCCCCccCCCC
Confidence 1000 0001111111 01110 00 012346789999999999999987543 4
Q ss_pred CcCCCCHHHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHH
Q 006836 217 HLGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (629)
Q Consensus 217 ~~Rsr~~e~Iv~Ei~~l~~~--GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~e 294 (629)
++|.++++.|++||+.+.+. |+++|+|.|++++.. . ..+.+|++.|.+ . +..|... ... .+++.
T Consensus 223 ~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~-~---~~~~~l~~~l~~-~---~i~~~~~--~~~-~~~~e--- 288 (472)
T TIGR03471 223 RYRTRSAESVIEEVKYALENFPEVREFFFDDDTFTDD-K---PRAEEIARKLGP-L---GVTWSCN--ARA-NVDYE--- 288 (472)
T ss_pred ceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCC-H---HHHHHHHHHHhh-c---CceEEEE--ecC-CCCHH---
Confidence 58999999999999999885 889999988765432 2 245677777754 2 3334322 222 23432
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 295 l~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
+.+.++..+ |.++++|+||+|+++|+.|+|+++.+++.++++.++++ |+.+.++||+|+||||.+++++|++++.++
T Consensus 289 ~l~~l~~aG-~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~--Gi~v~~~~IiGlPget~e~~~~ti~~~~~l 365 (472)
T TIGR03471 289 TLKVMKENG-LRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKL--GIKVHGTFILGLPGETRETIRKTIDFAKEL 365 (472)
T ss_pred HHHHHHHcC-CCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC--CCeEEEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 444555554 89999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCeEEEEeceeCCCCcccc
Q 006836 375 KFPQVHISQFYPRPGTPAAR 394 (629)
Q Consensus 375 ~~d~v~i~~ysP~PGTpa~~ 394 (629)
+++.++++.++|+||||+++
T Consensus 366 ~~~~~~~~~l~P~PGT~l~~ 385 (472)
T TIGR03471 366 NPHTIQVSLAAPYPGTELYD 385 (472)
T ss_pred CCCceeeeecccCCCcHHHH
Confidence 99999999999999999875
No 29
>PRK01254 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-33 Score=309.65 Aligned_cols=200 Identities=20% Similarity=0.306 Sum_probs=174.4
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCCC-cCCCCHHHHHHHHHHHHHC--CCcEEE--EeecCCCCCCC---C---------
Q 006836 192 FVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD--GVKEVW--LSSEDTGAYGR---D--------- 254 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG~-~Rsr~~e~Iv~Ei~~l~~~--GvkeI~--L~g~d~~~yg~---d--------- 254 (629)
..++|+|+|||+++|+||+++..+|+ ++|||+++|++|++.+.+. |+++++ |.|+|.+.||. |
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 34799999999999999999999998 7999999999999999974 999999 99999999996 2
Q ss_pred -----------cC---CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHH
Q 006836 255 -----------IG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320 (629)
Q Consensus 255 -----------~~---~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vL 320 (629)
+. ..+.+||++|.+ ++ ++.++++.+..|.++....+++.+.+....++.+|+||+||+|+++|
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~-Ip--GVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VL 528 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARD-LK--GIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPL 528 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHh-CC--CceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHH
Confidence 11 258899999975 66 88899999998877642222334434335778999999999999999
Q ss_pred HhhcCC--CCHHHHHHHHHHHHHhCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCC---CCcccc
Q 006836 321 SAMNRE--YTLSDFRTVVDTLIELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GTPAAR 394 (629)
Q Consensus 321 k~M~R~--~t~e~~~e~I~~lr~~~p-gi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~P---GTpa~~ 394 (629)
+.|+|+ ++.++|.+.++.+++.+| ++.+.++||+||||||++||+++++|+++++++..+++.|+|.| ||.+|.
T Consensus 529 k~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP~t~~T~MYy 608 (707)
T PRK01254 529 SKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSPMANATTMYY 608 (707)
T ss_pred HHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCCCcCchHHHh
Confidence 999998 789999999999999988 69999999999999999999999999999999999999999999 666653
No 30
>PRK05481 lipoyl synthase; Provisional
Probab=99.97 E-value=4.6e-30 Score=268.19 Aligned_cols=211 Identities=16% Similarity=0.241 Sum_probs=174.1
Q ss_pred CceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHH
Q 006836 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (629)
Q Consensus 190 ~~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~L~~ 268 (629)
....+||.+++||+++|+||++|..+| +++++++|+++++.+.+.|+++|+|+|+|.+.+. +.+ ..+.+|++.|.+
T Consensus 51 ~~~~~fi~is~GC~~~C~FC~i~~~r~--~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~-~~~~~~l~~Ll~~I~~ 127 (289)
T PRK05481 51 RGTATFMILGDICTRRCPFCDVATGRP--LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLP-DGGAQHFAETIRAIRE 127 (289)
T ss_pred CCeEEEEEecccccCCCCCceeCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcc-cccHHHHHHHHHHHHh
Confidence 346789999999999999999998775 7899999999999999999999999999865332 111 368899999987
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006836 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (629)
Q Consensus 269 ~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (629)
..+ +. ++++.+.+|....+. +..+++.+ ...+....++ ++++|+.|+|+++.++++++++.+++.+||+.+
T Consensus 128 ~~p--~i-rI~~l~~~~~~~~e~---L~~l~~ag--~~i~~~~~et-s~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~ 198 (289)
T PRK05481 128 LNP--GT-TIEVLIPDFRGRMDA---LLTVLDAR--PDVFNHNLET-VPRLYKRVRPGADYERSLELLKRAKELHPGIPT 198 (289)
T ss_pred hCC--Cc-EEEEEccCCCCCHHH---HHHHHhcC--cceeeccccC-hHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 554 33 566554444433333 44444332 3334444565 589999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccc-cCCCCCHHHHHHHHHHHHHHHHHhc
Q 006836 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTSVFEAFT 418 (629)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~-~~~~v~~~~~~~R~~~L~~l~~~~~ 418 (629)
.++||+|| |||++||.+|++++++++++.+++|+|+| |++ .| ++|+.++++|+++|++++.+.-
T Consensus 199 ~t~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~----pa~k~~-~v~~~~k~~r~~~l~~~~~~i~ 263 (289)
T PRK05481 199 KSGLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQ----PSRKHL-PVERYVTPEEFDEYKEIALELG 263 (289)
T ss_pred eeeeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCC----CccccC-CCCCcCCHHHHHHHHHHHHHcC
Confidence 99999999 99999999999999999999999999999 888 66 8999999999999999998653
No 31
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.95 E-value=3.5e-26 Score=253.17 Aligned_cols=325 Identities=22% Similarity=0.334 Sum_probs=222.1
Q ss_pred hhhHHHHHHHHHhcCcee----e--CC------------CCCCCEEEEeecccccchHHHHHHHHHHHhhC--CCCEEEE
Q 006836 72 QSDSEYMAGQLSAFGYAL----T--DN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVA 131 (629)
Q Consensus 72 ~~dse~m~~~L~~~G~~~----~--~~------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VVVg 131 (629)
..--.++++.|...|+.. . .. ...++.+.+..+.- ........++...+.. ++.|++|
T Consensus 31 ~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~G 108 (490)
T COG1032 31 PLGLRKLAAVLERAGKPNLFFDVVAGEPDSLENLLDALKKIRADLIGVSDPLG--GLRPDALKLVAKARGRRDKPLVVVG 108 (490)
T ss_pred CcchHHhHHHHHhcCCccccccccccccccchhhhhhhccccceeEEEecccc--hhchhhhHHHHHHhcccCCCeEEec
Confidence 344556677777777421 0 00 13455666633332 1122334444444433 2458999
Q ss_pred CcccCCChh-hhcc-cccE-EEcCCCHHHHHHHHHHHhcCCce--------Ee---------ecccCCCCCCC-------
Q 006836 132 GCVPQGSRD-LKEL-EGVS-IVGVQQIDRVVEVVEETLKGHEV--------RL---------LHRKKLPALDL------- 184 (629)
Q Consensus 132 Gc~a~~~~e-~~~~-~~d~-VvG~~e~~~l~ell~~~~~g~~~--------~~---------~~~~~~p~~~l------- 184 (629)
|.+++..++ +... +.|. ++|+++ ..++++++....+... +. .+..+.+..++
T Consensus 109 G~~~t~~~~~~~~~~~~D~iv~GeGE-~~~~~~~~~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (490)
T COG1032 109 GPEATENPEPLLDFGPADIIVIGEGE-ETLPELLEALEEGEDDPRVPGLALPSFEEIVYDQDLDDVPIPAYDLVDDHKRD 187 (490)
T ss_pred CCCcCCCcHHHHhhcCCCEEEEcCch-HHHHHHHHHHhccccccccCccccCChhhcccccccccCCccceeeccccccc
Confidence 999998875 4433 3576 667766 6889988876654321 10 01112222221
Q ss_pred --CcccC-CceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---CCC
Q 006836 185 --PKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVN 258 (629)
Q Consensus 185 --p~~r~-~~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~---~~~ 258 (629)
|.... .....+|+++||||++|+||.++... ++|+++++++++|++.+++.|.+.+.+..+|.+.|+.+. ...
T Consensus 188 ~~p~~~~~~~~~~~ve~~RGCp~~C~FC~~~~~~-~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 266 (490)
T COG1032 188 DLPPYGAGENRAFSVETSRGCPRGCRFCSITKHF-KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKR 266 (490)
T ss_pred ccCCcccccceEEEEEeccCCCCCCCCCCCcccc-cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhh
Confidence 21111 23367899999999999999998766 789999999999999999999999887778888888752 122
Q ss_pred HHHHHHHHHHhCCCCCCceEEEe--ecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHH-H
Q 006836 259 LPILLNAIVAELPPDGSTMLRIG--MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT-V 335 (629)
Q Consensus 259 l~eLL~~L~~~i~~~~~~~iri~--~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e-~ 335 (629)
+..+...+.+... .....+.+. .++++.+++ +++..+++..+ +..+.+|+||+|+++|+.|+|+++.++..+ +
T Consensus 267 ~~~l~~~~~~~~~-~~~~~~~~~~~~~r~d~~~~--~~~~~~~~~~g-~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a 342 (490)
T COG1032 267 FELLSLELIERGL-RKGCRVHISAPSLRADTVTD--EELLKLLREAG-LRRVYIGIESGSEELLKKINKGITTEEVLEEA 342 (490)
T ss_pred cccchHHHHHHhc-ccCceeeeeccccCchhcCH--HHHHHHHhhCC-CcceEEeccCCCHHHHHHHhCCCChHHHHHHH
Confidence 3333333333221 022333333 245655552 23455565555 789999999999999999999999999995 9
Q ss_pred HHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHH---HHHHHhcCCC-eEEEEeceeCCCCccccCCCCCHHHHHHH
Q 006836 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQT---VNLIKEYKFP-QVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (629)
Q Consensus 336 I~~lr~~~pgi~i~td~IvGfPGETeedf~eT---l~fl~~l~~d-~v~i~~ysP~PGTpa~~~~~v~~~~~~~R 406 (629)
++.+.++ ++.+..+||+|+||||++|+.+| ++++++++.. .+.++.|+|.|||+++.+..........+
T Consensus 343 ~~~~~~~--~~~~~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~~~~~~~~~~~~~~ 415 (490)
T COG1032 343 VKIAKEH--GLRVKLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQEMPKLENELLKRR 415 (490)
T ss_pred HHHHHhC--CceeeEEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEEeeeeCCCCCchhhcccccchhhhhh
Confidence 9999999 99999999999999999999999 7888888885 89999999999999998875444444333
No 32
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.95 E-value=1.1e-25 Score=237.75 Aligned_cols=396 Identities=20% Similarity=0.275 Sum_probs=266.5
Q ss_pred HHHHHHHHHhcCcee--e--------------CCCCCCCEEEEeecccccchH---------HHHHHHHHHHhhCCCCEE
Q 006836 75 SEYMAGQLSAFGYAL--T--------------DNSEEADIWLINTCTVKSPSQ---------SAMDTLIAKCKSAKKPLV 129 (629)
Q Consensus 75 se~m~~~L~~~G~~~--~--------------~~~~~ADlviINTCtv~~~ae---------~~~~~~ir~~k~~~~~VV 129 (629)
..|+++.|.++|-.. . .....+|++++ -|.++.|.. +.+..+++.+ .| .-|
T Consensus 26 pRY~aGAl~~~g~~~~v~Y~tID~lR~~~~~~~~l~k~d~~V~-I~G~~vPGKYlga~P~tl~E~~~i~~~~--~g-vki 101 (560)
T COG1031 26 PRYAAGALKKAGKDVEVDYVTIDRLRENFKTLEILNKYDLVVF-IAGVTVPGKYLGATPATLEELLRILSIA--DG-VKI 101 (560)
T ss_pred HHHHHHHHHHcCCCceeEEEEHHHhhccchhhhhhhcCCEEEE-EeccccCccccCCCCCCHHHHHHHHHHh--cC-cEE
Confidence 567888888886322 0 11457899888 788886532 2333333322 23 457
Q ss_pred EECcccCCChh-------hhccc--ccEEEcCCCHHHHHHHHHHHhcCC----ceEeecc-cCCCCCC------CCcccC
Q 006836 130 VAGCVPQGSRD-------LKELE--GVSIVGVQQIDRVVEVVEETLKGH----EVRLLHR-KKLPALD------LPKVRR 189 (629)
Q Consensus 130 VgGc~a~~~~e-------~~~~~--~d~VvG~~e~~~l~ell~~~~~g~----~~~~~~~-~~~p~~~------lp~~r~ 189 (629)
+||+.+..... ..++. .|.++-.+=+..+.+++.....+. ..+.+.. ..+..+. .|.+ .
T Consensus 102 lGGP~~~~~~~~gg~~~~~~e~~~~fD~va~gD~Ea~~~dl~~eG~~~~~~~~r~rd~~el~~~A~~GA~vv~qHP~y-p 180 (560)
T COG1031 102 LGGPAALGSSRGGGRAVEPSEIKAGFDVVASGDVEAFVYDLFSEGVERAIDPDRFRDYEELDAYAPLGAEVVKQHPNY-P 180 (560)
T ss_pred ecccccccccccCcccCChhhhccceeEEEeccHHHHHHHHHhcCCcccCChhhhccHHHHHhhhhccchHHHhCCCC-c
Confidence 88887765432 11223 244443322233445554221111 0111100 0000000 1111 1
Q ss_pred CceEEEEEeCCCCCCC----CCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeec-CCCCCCCCcC--------
Q 006836 190 NKFVEILPINVGCLGA----CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE-DTGAYGRDIG-------- 256 (629)
Q Consensus 190 ~~~~a~V~isrGCp~~----CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~-d~~~yg~d~~-------- 256 (629)
...++-|+++||||+. ||||+.|.. |....||+|+|++|++.|++.|+++|.|--| |+++|+.+..
T Consensus 181 ~~vi~EiETyRGC~r~~~ggCSFCtEp~~-g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~Pn 259 (560)
T COG1031 181 EYVICEIETYRGCPRRVSGGCSFCTEPVR-GRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPN 259 (560)
T ss_pred ceEEEEEeeccCCcccccCCCccccCcCc-CCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCC
Confidence 2457889999999987 999999975 9999999999999999999999999999755 8888876521
Q ss_pred -CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHH---HHHHH-hCCCcccccccccCCCCHHHHHhhcCCCCHHH
Q 006836 257 -VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE---IAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSD 331 (629)
Q Consensus 257 -~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~e---l~~l~-~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~ 331 (629)
..+.+|.+.+...-| +...+++...||..+.+..++ +.+.+ +...--+-..+|+||+++++.+.-|=..+.|+
T Consensus 260 PealekL~~Gir~~AP--~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEE 337 (560)
T COG1031 260 PEALEKLFRGIRNVAP--NLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEE 337 (560)
T ss_pred HHHHHHHHHHHHhhCC--CCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHH
Confidence 246777788877655 788899999999888654433 33322 22212356789999999999999999999999
Q ss_pred HHHHHHHHHHh--------CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCeEEEEeceeCCCCccccCCCC
Q 006836 332 FRTVVDTLIEL--------VPGMQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGTPAARMKKV 398 (629)
Q Consensus 332 ~~e~I~~lr~~--------~pgi~i~td~IvGfPGETeedf~eTl~fl~~l-----~~d~v~i~~ysP~PGTpa~~~~~v 398 (629)
+.++|+.+.+. +|-+....+||+|+||||.|+|+-+.+|++++ -+.+++|-+..++||||++.+.
T Consensus 338 vl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~~-- 415 (560)
T COG1031 338 VLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWERG-- 415 (560)
T ss_pred HHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchhhhh--
Confidence 99999999986 45567788999999999999999999999997 3578999999999999999553
Q ss_pred CHHHHHHHHHHHHHHHHH-------hcccccC--CCcEE-EEEEEEEecCCceEEEEecCCeEEEECCC-CCCCCCEEEE
Q 006836 399 PSAVVKKRSRELTSVFEA-------FTPYLGM--EGRVE-RIWITEIAADGIHLVGHTKGYVQVLVPST-GNMLGTSALV 467 (629)
Q Consensus 399 ~~~~~~~R~~~L~~l~~~-------~~~~~~~--vG~~~-~Vlve~~~~~~~~~~Grt~~y~~V~v~~~-~~~~G~~v~V 467 (629)
..+.++.+++...++. ...+++. .|.++ +|.+|.. ++...+||...-.++++--+ ....|++++|
T Consensus 416 --~~~~~khk~~~~~fk~~VRe~iD~~MLkrVvP~GTvLrdv~vE~~--~~~~tfgRQ~GSYPllvgi~~~~~~g~~~Dv 491 (560)
T COG1031 416 --KKKAEKHKKLFAAFKRKVREEIDLPMLKRVVPKGTVLRDVRVEVY--EGGLTFGRQLGSYPLLVGIPGRLELGRYVDV 491 (560)
T ss_pred --hHHHHHHHHHHHHHHHHHHHhcCHHHHHhcCCCCceeeeEEEEEe--cCCceeecccCCcceEeeccccccCCceEEE
Confidence 2333333333333432 1234443 47777 5666654 23346799988665554322 2357999999
Q ss_pred EEEEEeeceEEEEEEec
Q 006836 468 KITSVGRWSVFGEVIKI 484 (629)
Q Consensus 468 ~I~~~~~~~l~g~~v~~ 484 (629)
.|++++..|+.|.+...
T Consensus 492 ~vvdhG~RSVt~ip~pl 508 (560)
T COG1031 492 VVVDHGARSVTAIPVPL 508 (560)
T ss_pred EEeccCcceeeeccccc
Confidence 99999999999987644
No 33
>PRK07094 biotin synthase; Provisional
Probab=99.93 E-value=1.1e-24 Score=231.07 Aligned_cols=196 Identities=15% Similarity=0.279 Sum_probs=157.6
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCCC-cCC-CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 006836 192 FVEILPINVGCLGACTYCKTKHARGH-LGS-YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG~-~Rs-r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~ 269 (629)
..+.|++++||+++|.||..+...+. .+. +++++|+++++.+.+.|+++|.|+|++...+.. ..+.++++.|.+.
T Consensus 39 ~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~---~~l~~l~~~i~~~ 115 (323)
T PRK07094 39 LRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYELGYRTIVLQSGEDPYYTD---EKIADIIKEIKKE 115 (323)
T ss_pred EEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCH---HHHHHHHHHHHcc
Confidence 35689999999999999999876553 333 499999999999999999999999765444432 3467777777653
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEE
Q 006836 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349 (629)
Q Consensus 270 i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~ 349 (629)
. + ..+.++ +...++. ..+.++..+ +..+++|+||+|+++++.|+++++.+++.++++.++++ |+.+.
T Consensus 116 -~--~-l~i~~~---~g~~~~e---~l~~Lk~aG-~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~--Gi~v~ 182 (323)
T PRK07094 116 -L--D-VAITLS---LGERSYE---EYKAWKEAG-ADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKEL--GYEVG 182 (323)
T ss_pred -C--C-ceEEEe---cCCCCHH---HHHHHHHcC-CCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeec
Confidence 1 2 233332 2222332 223344444 78999999999999999999999999999999999999 99999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHHH
Q 006836 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403 (629)
Q Consensus 350 td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~~ 403 (629)
+++|+|+||||.+++.++++++++++++.+.+++|+|.||||+++.+..+.+..
T Consensus 183 ~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~ 236 (323)
T PRK07094 183 SGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELT 236 (323)
T ss_pred ceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHH
Confidence 999999999999999999999999999999999999999999998876665444
No 34
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.92 E-value=1.1e-23 Score=220.59 Aligned_cols=195 Identities=21% Similarity=0.312 Sum_probs=157.2
Q ss_pred CceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHH
Q 006836 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (629)
Q Consensus 190 ~~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~L~~ 268 (629)
....+|+.+++||+++|+||++++.+|+.++ ++++++++++.+.+.|+++|+|+++|...|. |.+ ..+.+++++|.+
T Consensus 61 ~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~-~~eei~~~a~~~~~~GlkevvLTsv~~ddl~-d~g~~~l~~li~~I~~ 138 (302)
T TIGR00510 61 HGTATFMILGDICTRRCPFCDVAHGRNPLPP-DPEEPAKLAETIKDMGLKYVVITSVDRDDLE-DGGASHLAECIEAIRE 138 (302)
T ss_pred CCEEEEEecCcCcCCCCCcCCccCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEEeecCCCcc-cccHHHHHHHHHHHHh
Confidence 4567899999999999999999988887766 5799999999999999999999998776553 222 468999999987
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006836 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (629)
Q Consensus 269 ~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (629)
..+ + ..+++ +.|+... . .++.+.+...+ +..+...+|+. +++++.|+|+++.++++++++.+++.+||+.+
T Consensus 139 ~~p--~-i~Iev--l~~d~~g-~-~e~l~~l~~aG-~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~ 209 (302)
T TIGR00510 139 KLP--N-IKIET--LVPDFRG-N-IAALDILLDAP-PDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNLPT 209 (302)
T ss_pred cCC--C-CEEEE--eCCcccC-C-HHHHHHHHHcC-chhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCee
Confidence 554 2 23444 4443221 1 12233333333 55677789977 88999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEece-e-CCCCccccCC
Q 006836 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY-P-RPGTPAARMK 396 (629)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ys-P-~PGTpa~~~~ 396 (629)
.++||+|| |||++|+.++++++++++++.+.+++|. | .+++|+.++.
T Consensus 210 ~TgiIVGl-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~ 258 (302)
T TIGR00510 210 KSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYV 258 (302)
T ss_pred cceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCC
Confidence 99999999 9999999999999999999999999995 5 6788877654
No 35
>PRK12928 lipoyl synthase; Provisional
Probab=99.92 E-value=1.6e-23 Score=218.83 Aligned_cols=209 Identities=18% Similarity=0.254 Sum_probs=159.4
Q ss_pred CceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHH
Q 006836 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (629)
Q Consensus 190 ~~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~L~~ 268 (629)
....+||.+++||+++|+||+++. |+.+++++++++++++.+.+.|+++|+|+|.+...+. |.+ ..+.++++.|.+
T Consensus 58 ~~~~tfv~is~gC~~~C~FCa~~~--g~~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~ 134 (290)
T PRK12928 58 QGTATFLIMGSICTRRCAFCQVDK--GRPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRA 134 (290)
T ss_pred CCEEEEEEecccccCcCCCCCccC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHh
Confidence 456789999999999999999987 6677899999999999999999999999997653321 111 357899999977
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006836 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (629)
Q Consensus 269 ~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (629)
..+ .+++..+.|+.+....+.+..+...+ ...+...+|| ++++++.|+|+++.++++++++.+++..|++.+
T Consensus 135 ~~p-----~~~I~~ltp~~~~~~~e~L~~l~~Ag--~~i~~hnlEt-~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~ 206 (290)
T PRK12928 135 RNP-----GTGIEVLTPDFWGGQRERLATVLAAK--PDVFNHNLET-VPRLQKAVRRGADYQRSLDLLARAKELAPDIPT 206 (290)
T ss_pred cCC-----CCEEEEeccccccCCHHHHHHHHHcC--chhhcccCcC-cHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcee
Confidence 543 33455556654321112244444432 3344445776 699999999999999999999999999777999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEecee--CCCCccccCCCCCHHHHHHHHHHHHHHHHH
Q 006836 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP--RPGTPAARMKKVPSAVVKKRSRELTSVFEA 416 (629)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP--~PGTpa~~~~~v~~~~~~~R~~~L~~l~~~ 416 (629)
.++||+|| |||++|+.++++++++++++.+++|+|.+ ....|..++ +++++ +..+.+...+
T Consensus 207 ~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~--~~~~~----f~~~~~~~~~ 269 (290)
T PRK12928 207 KSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRY--WTPEE----FEALGQIARE 269 (290)
T ss_pred cccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeec--cCHHH----HHHHHHHHHH
Confidence 99999999 99999999999999999999999999987 555565544 34433 4444444443
No 36
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=99.91 E-value=8.1e-25 Score=192.74 Aligned_cols=92 Identities=42% Similarity=0.683 Sum_probs=84.4
Q ss_pred eEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEECcccC
Q 006836 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVPQ 136 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~---~~VVVgGc~a~ 136 (629)
||||+||||+||++|||.|++.|.+.||++++++++||+++||||+|+.+|++++++.|+++++.+ ++|||+||+||
T Consensus 1 Kv~i~T~GC~~N~~Dse~i~~~l~~~G~~~~~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq 80 (98)
T PF00919_consen 1 KVYIETLGCQMNQYDSERIASILQAAGYEIVDDPEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQ 80 (98)
T ss_pred CEEEEECCCcccHHHHHHHHHHHHhcCCeeecccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccc
Confidence 699999999999999999999999999999999999999999999999999999999999987765 78999999999
Q ss_pred CChh-hh-ccc-ccEEEc
Q 006836 137 GSRD-LK-ELE-GVSIVG 151 (629)
Q Consensus 137 ~~~e-~~-~~~-~d~VvG 151 (629)
.+++ +. ..+ .|.|+|
T Consensus 81 ~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 81 RYGEELKKEFPEVDLVVG 98 (98)
T ss_pred cChHHHHhhCCCeEEEeC
Confidence 9996 44 445 477887
No 37
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=1.9e-23 Score=224.38 Aligned_cols=210 Identities=18% Similarity=0.290 Sum_probs=164.5
Q ss_pred EEEEeCCCCCCCCCCCccCccCCC-----cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 006836 194 EILPINVGCLGACTYCKTKHARGH-----LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG~-----~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~ 268 (629)
.||.|-- |+.+|.||......+. +..+..+++..|++.+....++.|+|.|.+.+.... ..+.+|++.+.+
T Consensus 9 lYiHiPF-C~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~~---~~l~~ll~~i~~ 84 (353)
T PRK05904 9 LYIHIPF-CQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLND---QLLDILLSTIKP 84 (353)
T ss_pred EEEEeCC-ccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCCH---HHHHHHHHHHHH
Confidence 4444443 9999999998754221 223345555555554433456788887765544432 356778888877
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-
Q 006836 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ- 347 (629)
Q Consensus 269 ~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~- 347 (629)
.++ ....+.+. .+|..+++.. + +.++..+ +++|++|+||+++++|+.|+|+++.+++.++++.++++ |+.
T Consensus 85 ~~~--~~~eitiE-~nP~~lt~e~--l-~~lk~~G-~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~--G~~~ 155 (353)
T PRK05904 85 YVD--NNCEFTIE-CNPELITQSQ--I-NLLKKNK-VNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKN--GIYN 155 (353)
T ss_pred hcC--CCCeEEEE-eccCcCCHHH--H-HHHHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCc
Confidence 654 45567775 7999887643 3 3444444 89999999999999999999999999999999999999 875
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH
Q 006836 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA 416 (629)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~ 416 (629)
++.|||+|+||||.++++++++++.+++++++.++.|+++|||+++++. .++++...++...+.++.+.
T Consensus 156 v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~ 225 (353)
T PRK05904 156 ISCDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNK 225 (353)
T ss_pred EEEEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876 57788888888888887764
No 38
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=8.9e-23 Score=221.18 Aligned_cols=193 Identities=21% Similarity=0.338 Sum_probs=154.8
Q ss_pred eEEEEEeCCCCCCCCCCCccCcc--CCCcCCCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 006836 192 FVEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~--rG~~Rsr~~e~Iv~Ei~~l~~~---GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L 266 (629)
...||.|.- |+++|+||.++.. .+..+.+.++.+++|++.+... +++.|+|.|++.+.... ..+.++++.+
T Consensus 2 ~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~~---~~l~~ll~~i 77 (377)
T PRK08599 2 TSAYIHIPF-CEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALSA---EQLERLLTAI 77 (377)
T ss_pred ceEEEEeCC-cCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCCH---HHHHHHHHHH
Confidence 356788886 9999999998753 3445667799999999776554 46677776654433322 3578888888
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 006836 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (629)
Q Consensus 267 ~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi 346 (629)
.+.++..+...+.+. ++|..+++.. + +.++..+ ++++++|+||+++++|+.|+|+++.+++.++++.++++ |+
T Consensus 78 ~~~~~~~~~~eit~e-~~p~~l~~e~--l-~~l~~~G-~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~--g~ 150 (377)
T PRK08599 78 HRNLPLSGLEEFTFE-ANPGDLTKEK--L-QVLKDSG-VNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKA--GF 150 (377)
T ss_pred HHhCCCCCCCEEEEE-eCCCCCCHHH--H-HHHHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CC
Confidence 776542223355554 7998887644 3 3444444 89999999999999999999999999999999999999 87
Q ss_pred E-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccC
Q 006836 347 Q-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (629)
Q Consensus 347 ~-i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~ 395 (629)
. +..|+|+|+||||.+++.++++++.+++++++.+++++|+|||++++.
T Consensus 151 ~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~ 200 (377)
T PRK08599 151 DNISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNL 200 (377)
T ss_pred CcEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHH
Confidence 5 789999999999999999999999999999999999999999999865
No 39
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.90 E-value=3.9e-22 Score=216.05 Aligned_cols=213 Identities=20% Similarity=0.294 Sum_probs=161.8
Q ss_pred EEEEEeCCCCCCCCCCCccCccCC-CcC-CCC----HHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCcCCCHH
Q 006836 193 VEILPINVGCLGACTYCKTKHARG-HLG-SYT----VESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLP 260 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG-~~R-sr~----~e~Iv~Ei~~l~~~------GvkeI~L~g~d~~~yg~d~~~~l~ 260 (629)
..||.|- =|+++|+||..+...+ +.+ +.+ ++.+.+||+...+. .++.|+|.|++.+.... ..+.
T Consensus 4 ~lYiHiP-FC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~---~~l~ 79 (375)
T PRK05628 4 GVYVHVP-FCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGA---EGLA 79 (375)
T ss_pred EEEEEeC-CcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCH---HHHH
Confidence 3455555 3999999999865432 322 233 78888898876653 26678887765554433 3578
Q ss_pred HHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHH
Q 006836 261 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340 (629)
Q Consensus 261 eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr 340 (629)
+|++.+.+.+.......+.+. ++|..+++.. +. .++..+ ++++++|+||+++++|+.|+|+++.+++.++++.++
T Consensus 80 ~ll~~i~~~~~~~~~~e~t~e-~~p~~i~~e~--l~-~l~~~G-~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~ 154 (375)
T PRK05628 80 RVLDAVRDTFGLAPGAEVTTE-ANPESTSPEF--FA-ALRAAG-FTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREAR 154 (375)
T ss_pred HHHHHHHHhCCCCCCCEEEEE-eCCCCCCHHH--HH-HHHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888765432122344443 6898887644 33 344444 899999999999999999999999999999999999
Q ss_pred HhCCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC------CCCHHHHHHHHHHHHHH
Q 006836 341 ELVPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK------KVPSAVVKKRSRELTSV 413 (629)
Q Consensus 341 ~~~pgi~-i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~------~v~~~~~~~R~~~L~~l 413 (629)
++ |+. +..|||+|+||||.++|.++++++.+++++++.+++++++||||+++.. .+++++..++...+.+.
T Consensus 155 ~~--g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (375)
T PRK05628 155 AA--GFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADAR 232 (375)
T ss_pred Hc--CCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHH
Confidence 99 887 9999999999999999999999999999999999999999999998742 34566666776666666
Q ss_pred HHH
Q 006836 414 FEA 416 (629)
Q Consensus 414 ~~~ 416 (629)
.++
T Consensus 233 l~~ 235 (375)
T PRK05628 233 LSA 235 (375)
T ss_pred HHH
Confidence 553
No 40
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.89 E-value=8.8e-22 Score=207.29 Aligned_cols=191 Identities=18% Similarity=0.335 Sum_probs=144.2
Q ss_pred EEEEeCCCCCCC--------CCCCccCccCCCcC---CCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCC
Q 006836 194 EILPINVGCLGA--------CTYCKTKHARGHLG---SYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVN 258 (629)
Q Consensus 194 a~V~isrGCp~~--------CsFC~ip~~rG~~R---sr~~e~Iv~Ei~~l~~----~GvkeI~L~g~d~~~yg~d~~~~ 258 (629)
..|...-+||++ |+||.... .++++ .+|.++|.++++...+ .+...++|.|. +++|... ..
T Consensus 20 ~~~~~g~~cpnrdg~~~~~gC~FC~~~~-~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~gg-t~t~l~~--~~ 95 (302)
T TIGR01212 20 ITLHGGFSCPNRDGTKGRGGCTFCNDAS-RPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAY-TNTYAPV--EV 95 (302)
T ss_pred eecCCCCCCCCCCCCCCCCCcccCCCCC-CccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECC-CcCCCCH--HH
Confidence 345667789994 99998633 34555 3555555555554443 22222566554 3444331 35
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcc-cccccccCCCCHHHHHhhcCCCCHHHHHHHHH
Q 006836 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY-SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337 (629)
Q Consensus 259 l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~-~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~ 337 (629)
+.++++.+.+ .+ ....+.+. ++|+.+++...++.+.+...+ + .++++|+||+++++|+.|+|+++.+++.++++
T Consensus 96 L~~l~~~i~~-~~--~~~~isi~-trpd~l~~e~l~~L~~l~~~G-~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~ 170 (302)
T TIGR01212 96 LKEMYEQALS-YD--DVVGLSVG-TRPDCVPDEVLDLLAEYVERG-YEVWVELGLQTAHDKTLKKINRGHDFACYVDAVK 170 (302)
T ss_pred HHHHHHHHhC-CC--CEEEEEEE-ecCCcCCHHHHHHHHHhhhCC-ceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHH
Confidence 6677777754 33 45566665 789988775433333333333 5 68999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccC
Q 006836 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (629)
Q Consensus 338 ~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~ 395 (629)
.++++ |+.+.+++|+|+||||.+++.+|++++.+++++.+.+++++|.||||++++
T Consensus 171 ~l~~~--gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~ 226 (302)
T TIGR01212 171 RARKR--GIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKM 226 (302)
T ss_pred HHHHc--CCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999986
No 41
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=1.3e-21 Score=216.64 Aligned_cols=194 Identities=18% Similarity=0.259 Sum_probs=156.5
Q ss_pred ceEEEEEeCCCCCCCCCCCccCcc--CCCcCCCCHHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCcCCCHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLPIL 262 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~--rG~~Rsr~~e~Iv~Ei~~l~~~------GvkeI~L~g~d~~~yg~d~~~~l~eL 262 (629)
+...||.|-- |+++|+||..... .+....+.++.+++||+...+. .++.|+|.|++.+.... ..+.+|
T Consensus 61 ~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~~---~~l~~l 136 (449)
T PRK09058 61 KRLLYIHIPF-CRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSA---EDLARL 136 (449)
T ss_pred ceEEEEEeCC-cCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCCH---HHHHHH
Confidence 4556777776 9999999987543 2334556789999999987642 36677777765444432 367888
Q ss_pred HHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006836 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 263 L~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (629)
++.+.+.++......+.+. .+|..+++.. +. .++..+ +++|+||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 137 l~~i~~~~~l~~~~eitiE-~~p~~~t~e~--l~-~l~~aG-vnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~ 211 (449)
T PRK09058 137 ITALREYLPLAPDCEITLE-GRINGFDDEK--AD-AALDAG-ANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVAR 211 (449)
T ss_pred HHHHHHhCCCCCCCEEEEE-eCcCcCCHHH--HH-HHHHcC-CCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhC
Confidence 8888776653344567775 7898887643 43 444444 89999999999999999999999999999999999999
Q ss_pred CCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccC
Q 006836 343 VPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (629)
Q Consensus 343 ~pg-i~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~ 395 (629)
| ..+..|||+|+||||.++++++++++.+++++++.++.|+++|||++++.
T Consensus 212 --g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~ 263 (449)
T PRK09058 212 --DRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKA 263 (449)
T ss_pred --CCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHH
Confidence 8 78999999999999999999999999999999999999999999999874
No 42
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=1.4e-21 Score=211.66 Aligned_cols=191 Identities=20% Similarity=0.327 Sum_probs=148.0
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCC--cCCCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 006836 193 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~Ei~~l~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~ 269 (629)
..||.|-- |+++|+||.++...++ .+...++.+++|++.+.. .+++.|+|.|.+.+.... ..+..|++.+..
T Consensus 5 ~lYiHiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~---~~l~~L~~~i~~- 79 (374)
T PRK05799 5 SLYIHIPF-CKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSL---EALEILKETIKK- 79 (374)
T ss_pred EEEEEeCC-ccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCH---HHHHHHHHHHHh-
Confidence 44666665 9999999999876554 233358999999986643 357778877654433222 234556666643
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-E
Q 006836 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-I 348 (629)
Q Consensus 270 i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~-i 348 (629)
+.......+.+. ++|..+++.. + +.++..+ +++++||+||+++++|+.|+|+++.+++.++++.++++ |+. +
T Consensus 80 ~~~~~~~eitie-~~p~~~t~e~--l-~~l~~~G-~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~--g~~~v 152 (374)
T PRK05799 80 LNKKEDLEFTVE-GNPGTFTEEK--L-KILKSMG-VNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKL--GFNNI 152 (374)
T ss_pred CCCCCCCEEEEE-eCCCcCCHHH--H-HHHHHcC-CCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCcE
Confidence 321122345544 7898887754 3 3444444 78999999999999999999999999999999999999 885 8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccC
Q 006836 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (629)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~ 395 (629)
..|+|+|+||||.+++.++++++.+++++++.++.++|+||||++++
T Consensus 153 ~~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~ 199 (374)
T PRK05799 153 NVDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNL 199 (374)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 43
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=1.4e-21 Score=209.92 Aligned_cols=183 Identities=14% Similarity=0.221 Sum_probs=148.7
Q ss_pred CCCCCCCCccCccC-C-CcCCCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCC
Q 006836 202 CLGACTYCKTKHAR-G-HLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275 (629)
Q Consensus 202 Cp~~CsFC~ip~~r-G-~~Rsr~~e~Iv~Ei~~l~~----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~ 275 (629)
|+.+|.||..+... + ..+.+.++.+++|++...+ .+++.|+|.|.+.+.... ..+.+|++.|...+. ..
T Consensus 10 C~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~---~~l~~ll~~i~~~~~--~~ 84 (350)
T PRK08446 10 CESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSA---KFYEPIFEIISPYLS--KD 84 (350)
T ss_pred ccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHHHHHHHHHHhcC--CC
Confidence 99999999986542 2 2445578999999997653 267888888765544432 346778888776543 34
Q ss_pred ceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEE
Q 006836 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIATDIIC 354 (629)
Q Consensus 276 ~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi-~i~td~Iv 354 (629)
..+.+. ++|..+++.. + +.++..+ ++++++|+||+++++|+.|+|+++.+++.++++.++++ |+ .++.|+|+
T Consensus 85 ~eitiE-~nP~~~~~e~--l-~~l~~~G-vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~--g~~~v~iDli~ 157 (350)
T PRK08446 85 CEITTE-ANPNSATKAW--L-KGMKNLG-VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKA--GFENISIDLIY 157 (350)
T ss_pred ceEEEE-eCCCCCCHHH--H-HHHHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCEEEEEeec
Confidence 566665 7998887643 3 3444444 89999999999999999999999999999999999999 88 58999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC
Q 006836 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396 (629)
Q Consensus 355 GfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~ 396 (629)
|+||||.+++.++++++.+++++++.++.|++.||||+++..
T Consensus 158 GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~ 199 (350)
T PRK08446 158 DTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKN 199 (350)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhh
Confidence 999999999999999999999999999999999999998754
No 44
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=5.1e-21 Score=213.03 Aligned_cols=215 Identities=20% Similarity=0.285 Sum_probs=162.9
Q ss_pred ceEEEEEeCCCCCCCCCCCccCcc--CCC--cCCCCHHHHHHHHHHHHH------CCCcEEEEeecCCCCCCCCcCCCHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHA--RGH--LGSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIGVNLP 260 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~--rG~--~Rsr~~e~Iv~Ei~~l~~------~GvkeI~L~g~d~~~yg~d~~~~l~ 260 (629)
....||.|- -||.+|.||.++.. .+. .....++.+++|++.+.+ .++..|+|.|+..+.... ..+.
T Consensus 163 ~~sLYihIP-FC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~---~~L~ 238 (488)
T PRK08207 163 EVSIYIGIP-FCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTA---EELE 238 (488)
T ss_pred ceEEEEecC-CCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCH---HHHH
Confidence 455677776 59999999998754 121 112347888999987643 246678888765544332 3578
Q ss_pred HHHHHHHHhCC-CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHH
Q 006836 261 ILLNAIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339 (629)
Q Consensus 261 eLL~~L~~~i~-~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~l 339 (629)
+|++.+.+.++ ..+...+.+...+|+.+++.. + +.++..+ +.+++||+||+++++|+.|+|+++.+++.++++.+
T Consensus 239 ~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~--L-~~Lk~~G-v~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~a 314 (488)
T PRK08207 239 RLLEEIYENFPDVKNVKEFTVEAGRPDTITEEK--L-EVLKKYG-VDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLA 314 (488)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCCCCCHHH--H-HHHHhcC-CCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 88888876552 113345666656899888754 3 4444554 78999999999999999999999999999999999
Q ss_pred HHhCCCC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC---CCC-HHHHHHHHHHHHHHH
Q 006836 340 IELVPGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK---KVP-SAVVKKRSRELTSVF 414 (629)
Q Consensus 340 r~~~pgi-~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~---~v~-~~~~~~R~~~L~~l~ 414 (629)
+++ |+ .+..|||+|+||||.+++.+|++++.+++++++.++.+++.|||+++... .+| +++..+......+..
T Consensus 315 r~~--Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l 392 (488)
T PRK08207 315 REM--GFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWA 392 (488)
T ss_pred HhC--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHH
Confidence 999 98 89999999999999999999999999999999999999999999999653 333 444444444444444
Q ss_pred H
Q 006836 415 E 415 (629)
Q Consensus 415 ~ 415 (629)
+
T Consensus 393 ~ 393 (488)
T PRK08207 393 K 393 (488)
T ss_pred H
Confidence 4
No 45
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=9.2e-21 Score=206.95 Aligned_cols=192 Identities=17% Similarity=0.249 Sum_probs=150.9
Q ss_pred EEEEEeCCCCCCCCCCCccCcc-CCC-cCCC-------CHHHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCcCCCHHH
Q 006836 193 VEILPINVGCLGACTYCKTKHA-RGH-LGSY-------TVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPI 261 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~-rG~-~Rsr-------~~e~Iv~Ei~~l~~~--GvkeI~L~g~d~~~yg~d~~~~l~e 261 (629)
..||.|-- |+.+|.||..+.. .|. .+.+ -++.+++||+..... +++.|+|.|.+.+.... ..+.+
T Consensus 12 ~lYiHiPF-C~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~---~~l~~ 87 (400)
T PRK07379 12 SAYIHIPF-CRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSV---EQLER 87 (400)
T ss_pred EEEEEecc-ccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHHH
Confidence 34555543 9999999998743 221 1111 256788888865432 57788887765554433 35788
Q ss_pred HHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHH
Q 006836 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341 (629)
Q Consensus 262 LL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~ 341 (629)
+++.|.+.++......+++. ++|..+++.. +. .++..+ ++++++|+||+++++|+.|+|+++.+++.++++.+++
T Consensus 88 ll~~i~~~~~~~~~~eit~E-~~P~~lt~e~--l~-~l~~~G-vnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~ 162 (400)
T PRK07379 88 ILTTLDQRFGIAPDAEISLE-IDPGTFDLEQ--LQ-GYRSLG-VNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQ 162 (400)
T ss_pred HHHHHHHhCCCCCCCEEEEE-eCCCcCCHHH--HH-HHHHCC-CCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 88888776542234567775 7998887643 33 444444 8999999999999999999999999999999999999
Q ss_pred hCCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccC
Q 006836 342 LVPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (629)
Q Consensus 342 ~~pgi~-i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~ 395 (629)
+ |+. ++.|+|+|+||||.++++++++++.+++++++.++.++|.||||+++.
T Consensus 163 ~--G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~ 215 (400)
T PRK07379 163 A--GIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQ 215 (400)
T ss_pred c--CCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHH
Confidence 9 987 999999999999999999999999999999999999999999999875
No 46
>PRK06256 biotin synthase; Validated
Probab=99.87 E-value=5.4e-21 Score=204.15 Aligned_cols=192 Identities=19% Similarity=0.280 Sum_probs=149.1
Q ss_pred CCCCCCCCCCCccCccCC----CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC
Q 006836 199 NVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274 (629)
Q Consensus 199 srGCp~~CsFC~ip~~rG----~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~ 274 (629)
++||+++|.||..+...+ +++.+++|+|+++++.+.+.|++++.|++........+ ...+.++++.+.+.. +
T Consensus 65 s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~-~~~~~e~i~~i~~~~---~ 140 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKE-VDQVVEAVKAIKEET---D 140 (336)
T ss_pred CCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchH-HHHHHHHHHHHHhcC---C
Confidence 899999999999986543 35778999999999999999999998875332222111 024556666665431 2
Q ss_pred CceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE
Q 006836 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354 (629)
Q Consensus 275 ~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~Iv 354 (629)
+.+. ++...+++.. + +.++..+ +..+++++|| ++++++.|+++++.+++.++++.++++ |+.+.+++|+
T Consensus 141 ---i~~~-~~~g~l~~e~--l-~~LkeaG-~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~--Gi~v~~~~I~ 209 (336)
T PRK06256 141 ---LEIC-ACLGLLTEEQ--A-ERLKEAG-VDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAA--GIEPCSGGII 209 (336)
T ss_pred ---CcEE-ecCCcCCHHH--H-HHHHHhC-CCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHc--CCeeccCeEE
Confidence 2222 1222234322 3 3344444 7889999999 999999999999999999999999999 9999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHHHHHH
Q 006836 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (629)
Q Consensus 355 GfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~~~~R 406 (629)
|+ |||.+|+.++++++++++++.+.++.|.|+||||+++.+.+++.+..+.
T Consensus 210 Gl-gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ 260 (336)
T PRK06256 210 GM-GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKT 260 (336)
T ss_pred eC-CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHH
Confidence 98 9999999999999999999999999999999999998877776655443
No 47
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.86 E-value=1.6e-20 Score=206.94 Aligned_cols=201 Identities=18% Similarity=0.267 Sum_probs=154.9
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCC---cCCCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCcCCCHHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~---~Rsr~~e~Iv~Ei~~l~~~----GvkeI~L~g~d~~~yg~d~~~~l~eLL 263 (629)
+...||.|-. |+.+|+||.++...+. .....++.+++||+.+.+. .+..|.|.|+..+.... ..+.+|+
T Consensus 39 ~~~lYvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~---~~l~~Ll 114 (430)
T PRK08208 39 ALSLYIHIPF-CEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNA---AELEKLF 114 (430)
T ss_pred ceEEEEEeCC-ccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCH---HHHHHHH
Confidence 5567888866 9999999998765442 2334679999999977643 35567776643333222 3567888
Q ss_pred HHHHHhCCCCC-CceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006836 264 NAIVAELPPDG-STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 264 ~~L~~~i~~~~-~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (629)
+.+.+.++... ...+.+. ++|..+++.. + +.++..+ +++|++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 115 ~~i~~~~~~~~~~~eitiE-~~P~~lt~e~--l-~~l~~~G-~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~ 189 (430)
T PRK08208 115 DSVERVLGVDLGNIPKSVE-TSPATTTAEK--L-ALLAARG-VNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAA 189 (430)
T ss_pred HHHHHhCCCCCCCceEEEE-eCcCcCCHHH--H-HHHHHcC-CCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 88876553211 2345554 7898887644 3 3444444 79999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHH
Q 006836 343 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (629)
Q Consensus 343 ~pgi~-i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~ 402 (629)
|+. +..|||+|+||||.++|+++++++.+++++++.++++++.|||+++......++.
T Consensus 190 --g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~~~~~~~ 248 (430)
T PRK08208 190 --GFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQ 248 (430)
T ss_pred --CCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhcCCCHHH
Confidence 885 6899999999999999999999999999999999999999999998764333333
No 48
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.86 E-value=8.4e-21 Score=200.75 Aligned_cols=192 Identities=17% Similarity=0.184 Sum_probs=144.2
Q ss_pred eEEEEEeCCCCCC----CCCCCccCccCCCcCCCCHHHHHHHHHHHHHC-CCcE----E-EEeecCCCCCCCCcCCCHHH
Q 006836 192 FVEILPINVGCLG----ACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE----V-WLSSEDTGAYGRDIGVNLPI 261 (629)
Q Consensus 192 ~~a~V~isrGCp~----~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~-Gvke----I-~L~g~d~~~yg~d~~~~l~e 261 (629)
....|..+||||+ +|+||.+.. +.++.++++.|+++++.+.+. +.+. + .|+++.+.....-....+.+
T Consensus 15 ~~~~i~~srGC~~~~~g~C~FC~~~~--~~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~ 92 (313)
T TIGR01210 15 SLTIILRTRGCYWAREGGCYMCGYLA--DSSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNY 92 (313)
T ss_pred eEEEEEeCCCCCCCCCCcCccCCCCC--CCCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHH
Confidence 3456899999999 599997553 345667999999999998874 3331 1 24443322111000123456
Q ss_pred HHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCccc-ccccccCCCCHHHHH-hhcCCCCHHHHHHHHHHH
Q 006836 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLS-AMNREYTLSDFRTVVDTL 339 (629)
Q Consensus 262 LL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~-~l~IGlESgsd~vLk-~M~R~~t~e~~~e~I~~l 339 (629)
+++.|.+ .+ ...++.+. ++|+.+++.. |.. ++..+ +. .|.+|+||+|+++|+ .|||+++.+++.++++.+
T Consensus 93 i~~~l~~-~~--~~~~i~~e-srpd~i~~e~--L~~-l~~aG-~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~ 164 (313)
T TIGR01210 93 IFEKIAQ-RD--NLKEVVVE-SRPEFIDEEK--LEE-LRKIG-VNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELA 164 (313)
T ss_pred HHHHHHh-cC--CcceEEEE-eCCCcCCHHH--HHH-HHHcC-CCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 6666654 22 24566664 6998887643 444 44444 77 799999999999995 899999999999999999
Q ss_pred HHhCCCCEEEEEEEEcCCC----CCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC
Q 006836 340 IELVPGMQIATDIICGFPG----ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396 (629)
Q Consensus 340 r~~~pgi~i~td~IvGfPG----ETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~ 396 (629)
+++ |+.+.++||+|+|+ ||.+++.++++++.+++ +++.+++++|.|||+++++.
T Consensus 165 ~~~--Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~~ 222 (313)
T TIGR01210 165 RKY--GAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFLW 222 (313)
T ss_pred HHc--CCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHHH
Confidence 999 99999999999996 55678889999999999 99999999999999987653
No 49
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=3.1e-20 Score=201.59 Aligned_cols=211 Identities=15% Similarity=0.196 Sum_probs=160.7
Q ss_pred EEEEeCCCCCCCCCCCccCccCCCc--CCCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 006836 194 EILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG~~--Rsr~~e~Iv~Ei~~l~~~----GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~ 267 (629)
.||.|-- |+.+|+||......... ..+.++.+++||+...+. .++.|+|.|.+.+.... ..+.+|++.|.
T Consensus 7 lYiHIPF-C~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~---~~L~~ll~~i~ 82 (380)
T PRK09057 7 LYVHWPF-CLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQP---ETVAALLDAIA 82 (380)
T ss_pred EEEEeCC-cCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCCH---HHHHHHHHHHH
Confidence 4454443 99999999986543211 123578899999876542 46788888765554432 35788888888
Q ss_pred HhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 006836 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (629)
Q Consensus 268 ~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~ 347 (629)
+.++......+.+. .+|..++... +..+ +..+ +++|++|+||+++++|+.|+|+++.+++.++++.++++ +..
T Consensus 83 ~~f~~~~~~eit~E-~~P~~i~~e~--L~~l-~~~G-vnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~--~~~ 155 (380)
T PRK09057 83 RLWPVADDIEITLE-ANPTSVEAGR--FRGY-RAAG-VNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREI--FPR 155 (380)
T ss_pred HhCCCCCCccEEEE-ECcCcCCHHH--HHHH-HHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHh--Ccc
Confidence 76653233466665 7999887633 4433 3444 79999999999999999999999999999999999999 889
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-----CC-CHHHHHHHHHHHHHHHH
Q 006836 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-----KV-PSAVVKKRSRELTSVFE 415 (629)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-----~v-~~~~~~~R~~~L~~l~~ 415 (629)
+..|+|+|+||+|.+++.++++.+.+++++++.++++++.||||+++.. .+ ++++..+......++.+
T Consensus 156 v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~ 229 (380)
T PRK09057 156 VSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITA 229 (380)
T ss_pred EEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998752 13 34444455555555554
No 50
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.86 E-value=2.3e-20 Score=201.24 Aligned_cols=195 Identities=17% Similarity=0.303 Sum_probs=149.9
Q ss_pred EEEeCCCCCCCCCCCccCccCCC--cCCCCHHHHHHHHHHHHH-CC---CcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 006836 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA-DG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (629)
Q Consensus 195 ~V~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~Ei~~l~~-~G---vkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~ 268 (629)
||.|-. |+.+|.||........ ....-.+.+++|++...+ .| ++.|+|.|.+.+.... ..+.++++.|.+
T Consensus 4 YiHiPF-C~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~---~~l~~ll~~i~~ 79 (360)
T TIGR00539 4 YIHIPF-CENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSV---EAFERLFESIYQ 79 (360)
T ss_pred EEEeCC-CcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCH---HHHHHHHHHHHH
Confidence 444444 9999999987654221 111236677778776443 24 6788888765544432 356778877766
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-E
Q 006836 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-Q 347 (629)
Q Consensus 269 ~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi-~ 347 (629)
.+.......+.+. ++|..+++.. +. .++..+ ++++++|+||+++++|+.|+|.++.+++.++++.++++ |+ .
T Consensus 80 ~~~~~~~~eitie-~np~~lt~e~--l~-~l~~~G-v~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~--G~~~ 152 (360)
T TIGR00539 80 HASLSDDCEITTE-ANPELITAEW--CK-GLKGAG-INRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKS--GIEN 152 (360)
T ss_pred hCCCCCCCEEEEE-eCCCCCCHHH--HH-HHHHcC-CCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 5432234566665 7999887644 33 344444 79999999999999999999999999999999999999 98 5
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCH
Q 006836 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPS 400 (629)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~ 400 (629)
+..|+|+|+||||.+++.++++++.+++++++.++.|+|.||||+++.. .+|.
T Consensus 153 v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~~~~ 206 (360)
T TIGR00539 153 ISLDLMYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKKLPD 206 (360)
T ss_pred EEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhcCcC
Confidence 8999999999999999999999999999999999999999999999765 4443
No 51
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=2.9e-20 Score=202.66 Aligned_cols=200 Identities=18% Similarity=0.263 Sum_probs=156.1
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCCC-----cCCCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHH
Q 006836 192 FVEILPINVGCLGACTYCKTKHARGH-----LGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPIL 262 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG~-----~Rsr~~e~Iv~Ei~~l~~----~GvkeI~L~g~d~~~yg~d~~~~l~eL 262 (629)
...||.|-- |+.+|.||..+..... ...+-.+.+.+|++.... ..++.|+|.|.+.+.... ..|.+|
T Consensus 20 ~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~---~~L~~l 95 (394)
T PRK08898 20 LSLYVHFPW-CVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSA---AGLDRL 95 (394)
T ss_pred eEEEEEeCC-ccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCH---HHHHHH
Confidence 344555544 9999999998654221 112357888888886543 236788888776665543 357888
Q ss_pred HHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006836 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 263 L~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (629)
++.|.+.++......+.+. .+|..++... +..+. ..+ ++++++|+||+++++|+.|+|.++.+++.++++.+++.
T Consensus 96 l~~i~~~~~~~~~~eit~E-~~p~~~~~e~--L~~l~-~~G-vnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~ 170 (394)
T PRK08898 96 LSDVRALLPLDPDAEITLE-ANPGTFEAEK--FAQFR-ASG-VNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKH 170 (394)
T ss_pred HHHHHHhCCCCCCCeEEEE-ECCCCCCHHH--HHHHH-HcC-CCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 8888887753333567775 6898887633 44443 344 89999999999999999999999999999999999998
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHH
Q 006836 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402 (629)
Q Consensus 343 ~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~ 402 (629)
+..++.|+|+|+||||.+++.++++++.+++++++.++.|++.||||+++.. .+|..+
T Consensus 171 --~~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~ 229 (394)
T PRK08898 171 --FDNFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDD 229 (394)
T ss_pred --CCceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChH
Confidence 7778999999999999999999999999999999999999999999999765 455433
No 52
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.85 E-value=8.5e-20 Score=191.19 Aligned_cols=197 Identities=19% Similarity=0.238 Sum_probs=150.2
Q ss_pred EEEEEe-CCCCCCCCCCCccCccC---C-CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 006836 193 VEILPI-NVGCLGACTYCKTKHAR---G-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (629)
Q Consensus 193 ~a~V~i-srGCp~~CsFC~ip~~r---G-~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~ 267 (629)
.+.+.+ ++||+++|.||..+... + ..+.+++++|+++++.+.+.|++++.|++....... ..+.++++.+.
T Consensus 29 ~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~----~~~~~~~~~i~ 104 (296)
T TIGR00433 29 CTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKD----REFMEYVEAMV 104 (296)
T ss_pred EEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCCh----HHHHHHHHHHH
Confidence 345565 99999999999987654 2 357789999999999999999999877643222111 23355666665
Q ss_pred HhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 006836 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (629)
Q Consensus 268 ~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~ 347 (629)
+.....+. .+. .+...+++. ..+.++..+ +..+.+++| +++++++.++++++.+++.++++.++++ |+.
T Consensus 105 ~~~~~~~i---~~~-~~~g~~~~e---~l~~Lk~aG-~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~--Gi~ 173 (296)
T TIGR00433 105 QIVEEMGL---KTC-ATLGLLDPE---QAKRLKDAG-LDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKA--GLK 173 (296)
T ss_pred HHHHhCCC---eEE-ecCCCCCHH---HHHHHHHcC-CCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHc--CCE
Confidence 43221122 221 233334432 334444444 789999999 8999999999999999999999999999 999
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHHHHH
Q 006836 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405 (629)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~~~~ 405 (629)
+.+++|+|+ +||.+++.++++++.+++++.+.+++|.|.||||+++.+.++.++..+
T Consensus 174 v~~~~i~Gl-~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~ 230 (296)
T TIGR00433 174 VCSGGIFGL-GETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALK 230 (296)
T ss_pred EEEeEEEeC-CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHH
Confidence 999999998 999999999999999999999999999999999999876666544333
No 53
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.85 E-value=4.2e-20 Score=180.47 Aligned_cols=194 Identities=36% Similarity=0.552 Sum_probs=154.1
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCC-----CcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 006836 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-----VKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~G-----vkeI~L~g~d~~~yg~d~~~~l~eLL~~L~ 267 (629)
.+++.+++||+++|.||..+...|+.+.++++++.++++.+.+.| .+.+.|.|.+...... ..+.++++.+.
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~---~~~~~~~~~~~ 78 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSP---EQLEELLEAIR 78 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCH---HHHHHHHHHHH
Confidence 457899999999999999887655566778999999999997665 3566777655444321 13678888887
Q ss_pred HhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC-C
Q 006836 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-M 346 (629)
Q Consensus 268 ~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg-i 346 (629)
+.........+.+. +++..+++.. +..+.+ .+ ...+.++++|+++++++.++++.+.+++.++++.++++ | +
T Consensus 79 ~~~~~~~~~~~~~~-tn~~~~~~~~--~~~l~~-~~-~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~ 151 (216)
T smart00729 79 EILGLADDVEITIE-TRPGTLTEEL--LEALKE-AG-VNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREA--GPI 151 (216)
T ss_pred HhCCCCCCeEEEEE-eCcccCCHHH--HHHHHH-cC-CCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHh--CCc
Confidence 65421002344443 5655555533 333433 33 45899999999999999999999999999999999999 8 8
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC
Q 006836 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396 (629)
Q Consensus 347 ~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~ 396 (629)
.+.+.+|+|+|+++.+++.++++++.+++++.+.+++|.|.||||++.++
T Consensus 152 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 152 KVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred ceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHHhc
Confidence 99999999999999999999999999999999999999999999999886
No 54
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.85 E-value=4.2e-20 Score=197.38 Aligned_cols=199 Identities=17% Similarity=0.239 Sum_probs=152.8
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---------CCCHHHHH
Q 006836 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---------GVNLPILL 263 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~---------~~~l~eLL 263 (629)
..+|.+++||+++|.||.++...|..+++++|+|+++++.+.+.|++++.|+|++...+..+. ...+.+++
T Consensus 13 ~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i 92 (336)
T PRK06245 13 NVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYL 92 (336)
T ss_pred ceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHH
Confidence 357899999999999999998888888999999999999999999999999987665443211 02345566
Q ss_pred HHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcC---CCCHHHHHHHHHHHH
Q 006836 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLI 340 (629)
Q Consensus 264 ~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R---~~t~e~~~e~I~~lr 340 (629)
+++.+... .+-.+..++|..+++.. +..+.+ .+ ..+++++||+++.+++.|+| +.+.++..+.++.++
T Consensus 93 ~~i~~~~~----~~g~~~~~~~~~lt~e~--i~~Lk~-ag--~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~ 163 (336)
T PRK06245 93 YDLCELAL----EEGLLPHTNAGILTREE--MEKLKE-VN--ASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAG 163 (336)
T ss_pred HHHHHHHh----hcCCCccccCCCCCHHH--HHHHHH-hC--CCCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHH
Confidence 66554322 11112236676666543 333333 22 35788899999999988865 456788899999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-----CCeEEEEeceeCCCCccccCCCCCHHHH
Q 006836 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVV 403 (629)
Q Consensus 341 ~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~-----~d~v~i~~ysP~PGTpa~~~~~v~~~~~ 403 (629)
+. |+.+.+++|+|+ |||.+++.+++.++++++ ++.+.+++|+|.||||+..++.++.++.
T Consensus 164 ~~--Gi~~~~~~i~G~-gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~ 228 (336)
T PRK06245 164 KL--KIPFTTGILIGI-GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEM 228 (336)
T ss_pred Hc--CCceeeeeeeEC-CCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHH
Confidence 98 999999999998 999999999999999985 6789999999999999977665555443
No 55
>PLN02428 lipoic acid synthase
Probab=99.85 E-value=1.4e-19 Score=192.14 Aligned_cols=208 Identities=19% Similarity=0.223 Sum_probs=160.1
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhC
Q 006836 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAEL 270 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~L~~~i 270 (629)
...++.+++||+++|.||+++..+++.+.+ ++++.+.++.+.+.|+++++|++.+...+ .|.+ ..+.++++.|.+..
T Consensus 102 taT~milg~gCtr~CrFCav~~~~~p~~~d-~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~ 179 (349)
T PLN02428 102 TATIMILGDTCTRGCRFCAVKTSRTPPPPD-PDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLK 179 (349)
T ss_pred eEEEEEecCCCCCCCCCCcCCCCCCCCCCC-hhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhC
Confidence 455789999999999999999877766654 78888888888889999999999876554 2322 46788888887644
Q ss_pred CCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHhCCCCEEE
Q 006836 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIA 349 (629)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~-R~~t~e~~~e~I~~lr~~~pgi~i~ 349 (629)
+ ++++..+.|+.+.+ +++++.+..++ +..++.++|+ ++++++.|+ ++++.++++++++.+++.+||+.+.
T Consensus 180 P-----~i~Ie~L~pdf~~d--~elL~~L~eAG-~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tk 250 (349)
T PLN02428 180 P-----EILVEALVPDFRGD--LGAVETVATSG-LDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTK 250 (349)
T ss_pred C-----CcEEEEeCccccCC--HHHHHHHHHcC-CCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 3 56777777765522 22344444444 6789999997 889999999 7899999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH
Q 006836 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA 416 (629)
Q Consensus 350 td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~ 416 (629)
++||+|| |||++|+.++++++++++++.+.+.+|. .|...-.... -+++++ ++.+.+...+
T Consensus 251 Sg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL-~Ps~~h~~v~~~v~p~~----f~~~~~~~~~ 312 (349)
T PLN02428 251 TSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYL-RPTKRHLPVKEYVTPEK----FEFWREYGEE 312 (349)
T ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCCEEeecccc-CCCcceeeeecccCHHH----HHHHHHHHHH
Confidence 9999999 9999999999999999999999998885 4432211112 355644 4445555443
No 56
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.84 E-value=2.2e-19 Score=194.81 Aligned_cols=198 Identities=16% Similarity=0.262 Sum_probs=153.3
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCCC--cC-CCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 006836 192 FVEILPINVGCLGACTYCKTKHARGH--LG-SYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG~--~R-sr~~e~Iv~Ei~~l~~----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~ 264 (629)
...||.|-. |+.+|.||.......+ .. ..-.+.+++||+.... .+++.|+|.|.+.+.... ..+.++++
T Consensus 7 ~~lYiHiPF-C~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~---~~l~~ll~ 82 (378)
T PRK05660 7 LSLYIHIPW-CVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSA---EAIQRLLD 82 (378)
T ss_pred eEEEEEeCC-ccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCCH---HHHHHHHH
Confidence 345666655 9999999997643221 11 1126668888875322 467889998876655433 35788888
Q ss_pred HHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 006836 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (629)
Q Consensus 265 ~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p 344 (629)
.+.+.++......+.+. ++|..++... +.. ++..+ +++|++|+||+++++|+.|+|+++.++..++++.++++
T Consensus 83 ~l~~~~~~~~~~eit~e-~np~~l~~e~--l~~-Lk~~G-v~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~-- 155 (378)
T PRK05660 83 GVRARLPFAPDAEITME-ANPGTVEADR--FVG-YQRAG-VNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGL-- 155 (378)
T ss_pred HHHHhCCCCCCcEEEEE-eCcCcCCHHH--HHH-HHHcC-CCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHc--
Confidence 88776642223466665 7999887643 443 44444 79999999999999999999999999999999999999
Q ss_pred CC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCH
Q 006836 345 GM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPS 400 (629)
Q Consensus 345 gi-~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~ 400 (629)
|+ .+..|+|+|+||||.+++.++++++.+++++++.+++++++|||++++.. .+|.
T Consensus 156 G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~ 213 (378)
T PRK05660 156 GLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPD 213 (378)
T ss_pred CCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcC
Confidence 98 47899999999999999999999999999999999999999999998754 4443
No 57
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.84 E-value=1.4e-19 Score=196.87 Aligned_cols=193 Identities=15% Similarity=0.200 Sum_probs=149.6
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCCCc--CCCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 006836 192 FVEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG~~--Rsr~~e~Iv~Ei~~l~~----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~ 265 (629)
...||.|- =|+.+|.||......... ...-.+.+.+|++.+.. ..++.|+|.|.+.+.... ..+.++++.
T Consensus 12 ~~lYiHiP-FC~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~---~~l~~ll~~ 87 (390)
T PRK06582 12 LSIYIHWP-FCLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNP---VIVEGIINK 87 (390)
T ss_pred eEEEEEeC-CCcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCCH---HHHHHHHHH
Confidence 33455443 399999999986543221 12236777888886554 246788888765444332 346677777
Q ss_pred HHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 006836 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (629)
Q Consensus 266 L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg 345 (629)
+.+.+.......+.+. ++|..++... +. .++..+ ++++++|+||+++++|+.|+|+++.+++.++++.++++ +
T Consensus 88 i~~~~~~~~~~eitiE-~nP~~~~~e~--l~-~l~~~G-vnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~--~ 160 (390)
T PRK06582 88 ISNLAIIDNQTEITLE-TNPTSFETEK--FK-AFKLAG-INRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTI--F 160 (390)
T ss_pred HHHhCCCCCCCEEEEE-eCCCcCCHHH--HH-HHHHCC-CCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHh--C
Confidence 7764432245677776 7999887643 43 344444 79999999999999999999999999999999999998 8
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccC
Q 006836 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (629)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~ 395 (629)
..++.|+|+|+||+|.+++.++++.+.+++++++.++.+++.||||++++
T Consensus 161 ~~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~ 210 (390)
T PRK06582 161 PRVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKL 210 (390)
T ss_pred CcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHH
Confidence 88999999999999999999999999999999999999999999999875
No 58
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.83 E-value=8.9e-20 Score=197.33 Aligned_cols=188 Identities=17% Similarity=0.250 Sum_probs=141.3
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCC-c-CCCCHHHHHHH-HHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 006836 193 VEILPINVGCLGACTYCKTKHARGH-L-GSYTVESLVGR-VRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~-~-Rsr~~e~Iv~E-i~~l~~----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~ 265 (629)
..||.|-- |+++|.||........ . ...-++.+++| ++.... ..+..|+|.|.+.+.... ..+.+|++.
T Consensus 8 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~~---~~l~~ll~~ 83 (370)
T PRK06294 8 ALYIHIPF-CTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVPP---ALIQDILKT 83 (370)
T ss_pred EEEEEeCC-ccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCCH---HHHHHHHHH
Confidence 34555543 9999999987553211 1 11124556666 544332 235667776654333221 346667777
Q ss_pred HHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 006836 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (629)
Q Consensus 266 L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg 345 (629)
|... ....+.+. ++|..+++.. + +.++..+ +++++||+||+++++|+.|+|+++.+++.++++.++++ |
T Consensus 84 i~~~----~~~eit~E-~~P~~~~~~~--l-~~l~~~G-~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~--g 152 (370)
T PRK06294 84 LEAP----HATEITLE-ANPENLSESY--I-RALALTG-INRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEH--G 152 (370)
T ss_pred HHhC----CCCeEEEE-eCCCCCCHHH--H-HHHHHCC-CCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--C
Confidence 6542 34677775 8999887643 3 3444444 79999999999999999999999999999999999999 9
Q ss_pred C-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccC
Q 006836 346 M-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (629)
Q Consensus 346 i-~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~ 395 (629)
+ .++.|+|+|+||||.++|.++++++.+++++++.++.++|.||||+++.
T Consensus 153 ~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~ 203 (370)
T PRK06294 153 FSNLSIDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKH 203 (370)
T ss_pred CCeEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHH
Confidence 8 4999999999999999999999999999999999999999999999864
No 59
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.82 E-value=3.9e-19 Score=195.73 Aligned_cols=189 Identities=17% Similarity=0.222 Sum_probs=140.2
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccC-CCcCC-CCHHHHHHHHHHHHHCC--CcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHAR-GHLGS-YTVESLVGRVRTVIADG--VKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~r-G~~Rs-r~~e~Iv~Ei~~l~~~G--vkeI~L~g~d~~~yg~d~~~~l~eLL~~L 266 (629)
+...||.+-- |+++|+||..+... +..+. ..++.+++|++.+.+.| +..|+|.|.+.+.. . ..|.++++.+
T Consensus 52 ~~~LYvHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l-~---~~L~~ll~~i 126 (433)
T PRK08629 52 KYMLYAHVPF-CHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTIL-E---DELAKTLELA 126 (433)
T ss_pred cEEEEEEeCC-ccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccC-H---HHHHHHHHHH
Confidence 4455665554 99999999987542 22222 24799999999877654 45677666543332 2 3567788777
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC-C
Q 006836 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP-G 345 (629)
Q Consensus 267 ~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p-g 345 (629)
.+.+ ....+.+. ++|+.+++.. +. .++.. ++++++|+||+++++|+.|+|.++.++..++++.++.+.. .
T Consensus 127 ~~~f---~i~eis~E-~~P~~lt~e~--L~-~l~~~--vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~ 197 (433)
T PRK08629 127 KKLF---SIKEVSCE-SDPNHLDPPK--LK-QLKGL--IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLF 197 (433)
T ss_pred HHhC---CCceEEEE-eCcccCCHHH--HH-HHHHh--CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccC
Confidence 6654 34466765 7999988654 33 34433 7999999999999999999999977666555555554311 3
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccc
Q 006836 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (629)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~ 393 (629)
..+++|+|+||||||.+++.++++++.++++++++++++++.|||+..
T Consensus 198 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~ 245 (433)
T PRK08629 198 PIINVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKS 245 (433)
T ss_pred CeEEEEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhh
Confidence 467889999999999999999999999999999999999999999754
No 60
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.82 E-value=1.5e-18 Score=192.57 Aligned_cols=187 Identities=20% Similarity=0.302 Sum_probs=148.6
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCC---cCCCCHHHHHHHHHHHHH-----CCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 006836 193 VEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIA-----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~---~Rsr~~e~Iv~Ei~~l~~-----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~ 264 (629)
..||.|-. |+++|.||..+...+. .+...++.+++|++.+.. .+++.|+|.|.+.+.... ..+.+|++
T Consensus 51 ~lYiHiPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~---~~l~~ll~ 126 (455)
T TIGR00538 51 SLYVHIPF-CHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSP---EQISRLMK 126 (455)
T ss_pred EEEEEeCC-ccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCH---HHHHHHHH
Confidence 45666654 9999999998765432 233358999999998753 378889998876554433 35788888
Q ss_pred HHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 006836 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (629)
Q Consensus 265 ~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p 344 (629)
.+.+.++......+.+. ++|..+++.. +. .++..+ +++++||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 127 ~i~~~~~~~~~~eitie-~np~~l~~e~--l~-~lk~~G-~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~-- 199 (455)
T TIGR00538 127 LIRENFPFNADAEISIE-IDPRYITKDV--ID-ALRDEG-FNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREA-- 199 (455)
T ss_pred HHHHhCCCCCCCeEEEE-eccCcCCHHH--HH-HHHHcC-CCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--
Confidence 88775432123456665 7898887643 33 344444 89999999999999999999999999999999999999
Q ss_pred CCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCC
Q 006836 345 GMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (629)
Q Consensus 345 gi~-i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGT 390 (629)
|+. +..|||+|+||||.++|.++++++.+++++++.++.|++.|++
T Consensus 200 G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~ 246 (455)
T TIGR00538 200 GFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWV 246 (455)
T ss_pred CCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccch
Confidence 985 8999999999999999999999999999999999999998875
No 61
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.81 E-value=6e-19 Score=186.47 Aligned_cols=197 Identities=17% Similarity=0.276 Sum_probs=147.6
Q ss_pred EEEEeCCCCCCCCCCCccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
.+|.+++||+++|.||......+ +.+.+++|+|+++++.+.+.|+++|.|+|.+...+.. ..+.++++.|.+..+
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~---~~~~~i~~~Ik~~~~ 83 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDI---EYYEELFRAIKQEFP 83 (309)
T ss_pred eeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 36889999999999999876444 3557899999999999999999999999765443322 346788888877543
Q ss_pred CCCCceEEEeecCCcchh---H----HHHHHHHHHhCCCccccc-ccccCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHh
Q 006836 272 PDGSTMLRIGMTNPPFIL---E----HLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 272 ~~~~~~iri~~~~p~~i~---~----~l~el~~l~~~~~~~~~l-~IGlESgsd~vLk~M-~R~~t~e~~~e~I~~lr~~ 342 (629)
. +.+....+.++. . ..++..+.++.++ +..+ +.|+|++++++++.+ +++.+.+++.++++.+++.
T Consensus 84 --~---i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAG-l~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~ 157 (309)
T TIGR00423 84 --D---VHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAG-LDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRL 157 (309)
T ss_pred --C---ceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcC-CCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc
Confidence 2 233222221110 0 0123444555555 5666 579999999999888 5678999999999999999
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC----CCCc-cccC--CCCCHHH
Q 006836 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTP-AARM--KKVPSAV 402 (629)
Q Consensus 343 ~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~----PGTp-a~~~--~~v~~~~ 402 (629)
|+.+.+++|+|+| ||.+|+.+++.++++++.+..++..|.|. +||| +... +..+..+
T Consensus 158 --Gi~~~s~~iiG~~-Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e 221 (309)
T TIGR00423 158 --GIPTTATMMFGHV-ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGID 221 (309)
T ss_pred --CCCceeeEEecCC-CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHH
Confidence 9999999999986 89999999999999999888888777775 4888 5543 3444433
No 62
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.81 E-value=2.5e-18 Score=190.71 Aligned_cols=189 Identities=17% Similarity=0.244 Sum_probs=148.0
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCC-C--cCCCCHHHHHHHHHHHHHC-----CCcEEEEeecCCCCCCCCcCCCHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARG-H--LGSYTVESLVGRVRTVIAD-----GVKEVWLSSEDTGAYGRDIGVNLPIL 262 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG-~--~Rsr~~e~Iv~Ei~~l~~~-----GvkeI~L~g~d~~~yg~d~~~~l~eL 262 (629)
+...||.|-. |+++|.||....... + ....-++.+++||+.+.+. ++..|+|.|.+.+.... ..+.+|
T Consensus 50 ~~~LYvHIPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~---~~l~~l 125 (453)
T PRK13347 50 PVSLYLHVPF-CRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNP---DQFERL 125 (453)
T ss_pred ceEEEEEeCC-ccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCH---HHHHHH
Confidence 3456788887 999999998754322 1 1112368999999976542 56788888876655533 357888
Q ss_pred HHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006836 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 263 L~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (629)
++.|.+.++......+.+. ++|..+++.. + +.++..+ +++++||+||+++++|+.|+|.++.+++.++++.++++
T Consensus 126 l~~i~~~~~~~~~~e~tie-~~p~~lt~e~--l-~~L~~~G-~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~ 200 (453)
T PRK13347 126 MAALRDAFDFAPEAEIAVE-IDPRTVTAEM--L-QALAALG-FNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAA 200 (453)
T ss_pred HHHHHHhCCCCCCceEEEE-eccccCCHHH--H-HHHHHcC-CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 8888776542223456665 7998887644 3 3444444 89999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCC
Q 006836 343 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (629)
Q Consensus 343 ~pgi~-i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGT 390 (629)
|+. +..|||+|+||||.++|.++++++.+++++++.++.|+..|++
T Consensus 201 --G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~ 247 (453)
T PRK13347 201 --GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSR 247 (453)
T ss_pred --CCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccch
Confidence 885 8999999999999999999999999999999999999866654
No 63
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.80 E-value=3e-18 Score=190.12 Aligned_cols=187 Identities=20% Similarity=0.266 Sum_probs=146.9
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCC---cCCCCHHHHHHHHHHHHH-----CCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 006836 193 VEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIA-----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~---~Rsr~~e~Iv~Ei~~l~~-----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~ 264 (629)
..||.|-. |+++|+||..+...+. ...+.++.+++|++.+.+ .++..|.|.|.+.+.... ..+.+|++
T Consensus 51 ~LYvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~---~~l~~ll~ 126 (453)
T PRK09249 51 SLYVHIPF-CRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSP---EQLRRLMA 126 (453)
T ss_pred EEEEEeCC-ccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCH---HHHHHHHH
Confidence 34555543 9999999988654332 222457899999997665 247788888765444322 35788888
Q ss_pred HHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 006836 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (629)
Q Consensus 265 ~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p 344 (629)
.+.+.++......+.+. ++|..+++.. + +.++..+ +++|+||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 127 ~l~~~~~~~~~~e~tie-~np~~lt~e~--l-~~l~~aG-~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~-- 199 (453)
T PRK09249 127 LLREHFNFAPDAEISIE-IDPRELDLEM--L-DALRELG-FNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAAREL-- 199 (453)
T ss_pred HHHHhCCCCCCCEEEEE-ecCCcCCHHH--H-HHHHHcC-CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHc--
Confidence 88776542223456665 7998887644 3 3444444 89999999999999999999999999999999999999
Q ss_pred CC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCC
Q 006836 345 GM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (629)
Q Consensus 345 gi-~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGT 390 (629)
|+ .+.+|+|+|+||||.++++++++++.+++++++.++.|++.|++
T Consensus 200 G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~ 246 (453)
T PRK09249 200 GFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWL 246 (453)
T ss_pred CCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhh
Confidence 98 89999999999999999999999999999999999999977776
No 64
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.80 E-value=1e-18 Score=185.81 Aligned_cols=195 Identities=18% Similarity=0.251 Sum_probs=146.7
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC------------CCc-CC
Q 006836 193 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG------------RDI-GV 257 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg------------~d~-~~ 257 (629)
..+|++|+||+++|.||.++..+|. .+.+++|+|+++++.+.+.|++++.+++..-.... .+. ..
T Consensus 5 n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~ 84 (322)
T TIGR03550 5 NVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLE 84 (322)
T ss_pred eEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHH
Confidence 4578999999999999999887775 45899999999999999999999999854322111 000 02
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCC----CHHHHH
Q 006836 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY----TLSDFR 333 (629)
Q Consensus 258 ~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~----t~e~~~ 333 (629)
.+.++++.+.++.. . +..+++..+++.. +..+ +..+ . ++++.+|++++.+++.|++.+ +.++..
T Consensus 85 ~~~~~~~~i~~e~~---~----~~~~~~g~lt~e~--l~~L-k~aG-~-~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l 152 (322)
T TIGR03550 85 YLRELCELALEETG---L----LPHTNPGVMSRDE--LARL-KPVN-A-SMGLMLETTSERLCKGEAHYGSPGKDPAVRL 152 (322)
T ss_pred HHHHHHHHHHHhcC---C----ccccCCCCCCHHH--HHHH-HhhC-C-CCCcchhhhccccccccccCCCCCCCHHHHH
Confidence 34555565554321 1 1124555555533 3333 3333 2 468889999999888776655 467899
Q ss_pred HHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-----CCeEEEEeceeCCCCccccCCCCCHHH
Q 006836 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAV 402 (629)
Q Consensus 334 e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~-----~d~v~i~~ysP~PGTpa~~~~~v~~~~ 402 (629)
+.++.+++. |+.+.+++|+|+ |||++|+.+++.++++++ +..+.+++|.|.||||++..+.++..+
T Consensus 153 ~~i~~a~~~--Gi~~~s~~i~G~-gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e 223 (322)
T TIGR03550 153 ETIEDAGRL--KIPFTTGILIGI-GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEE 223 (322)
T ss_pred HHHHHHHHc--CCCccceeeEeC-CCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHH
Confidence 999999999 999999999997 999999999999999997 677888999999999998877666543
No 65
>PRK06267 hypothetical protein; Provisional
Probab=99.79 E-value=5e-18 Score=182.31 Aligned_cols=188 Identities=19% Similarity=0.267 Sum_probs=146.4
Q ss_pred EEEEEeCCCCC--CCCCCCccCccCC-----CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 006836 193 VEILPINVGCL--GACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (629)
Q Consensus 193 ~a~V~isrGCp--~~CsFC~ip~~rG-----~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~ 265 (629)
.+.|..|.+|+ ++|.||..+...+ .++.+++|+|++|++.+.+.|++.+.++|... +.. ..+.++++.
T Consensus 28 ~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~--~~~---~el~~i~e~ 102 (350)
T PRK06267 28 ERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGGYG--YTT---EEINDIAEM 102 (350)
T ss_pred EEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecCCC--CCH---HHHHHHHHH
Confidence 45677899999 9999998876433 34678999999999999999999887776532 221 346677777
Q ss_pred HHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 006836 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (629)
Q Consensus 266 L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg 345 (629)
+... .. ...++.++.+++. ++. ....+ .+..++||.++++++.++++++.+++.+.++.++++ |
T Consensus 103 I~~~-~~-~~~~~s~G~~d~~-------~~~-~~~l~----Gv~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~a--G 166 (350)
T PRK06267 103 IAYI-QG-CKQYLNVGIIDFL-------NIN-LNEIE----GVVGAVETVNPKLHREICPGKPLDKIKEMLLKAKDL--G 166 (350)
T ss_pred HHHh-hC-CceEeecccCCHH-------HHh-hcccc----CceeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHc--C
Confidence 7542 20 1134444433221 111 11222 345689999999999999999999999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHH
Q 006836 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (629)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~ 402 (629)
+.+.+++|+|+ |||.+|+.++++++++++++.+.+++|+|.||||++..+.+++++
T Consensus 167 i~v~~g~IiGl-gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e 222 (350)
T PRK06267 167 LKTGITIILGL-GETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLE 222 (350)
T ss_pred CeeeeeEEEeC-CCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHH
Confidence 99999999996 999999999999999999999999999999999998877666654
No 66
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.78 E-value=4e-18 Score=182.69 Aligned_cols=190 Identities=18% Similarity=0.303 Sum_probs=145.6
Q ss_pred EEEEeCCCCCCCCCCCccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
..|.+++||+++|.||......+ +...+++|+|+++++.+.+.|+++|.|+|++...+.. ..+.++++.|.+..+
T Consensus 41 ~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~---~~~~~i~~~Ik~~~~ 117 (343)
T TIGR03551 41 RNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDG---DFYLDILRAVKEEVP 117 (343)
T ss_pred eccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 35788999999999999865444 2234899999999999999999999999765443322 245788888877543
Q ss_pred CCCCceEEEee-------cCCcchhHHHHHHHHHHhCCCcccccc-cccCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHh
Q 006836 272 PDGSTMLRIGM-------TNPPFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIEL 342 (629)
Q Consensus 272 ~~~~~~iri~~-------~~p~~i~~~l~el~~l~~~~~~~~~l~-IGlESgsd~vLk~M~R~-~t~e~~~e~I~~lr~~ 342 (629)
+..+..++- .+.....+ +..+.++.++ +..++ .+.|++++++++.+.++ .+.+++.++++.++++
T Consensus 118 --~i~~~~~t~~ei~~~~~~~g~~~~---e~l~~LkeAG-l~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~ 191 (343)
T TIGR03551 118 --GMHIHAFSPMEVYYGARNSGLSVE---EALKRLKEAG-LDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKL 191 (343)
T ss_pred --CceEEecCHHHHHHHHHHcCCCHH---HHHHHHHHhC-cccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHc
Confidence 333322110 01111122 2233334444 66666 57899999999999986 5999999999999999
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCC----CCccccC
Q 006836 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP----GTPAARM 395 (629)
Q Consensus 343 ~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~P----GTpa~~~ 395 (629)
|+.+.+.+|+|+| ||.+|+.+++.++++++.++.++..|.|+| |||++..
T Consensus 192 --Gi~v~s~~i~G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~ 245 (343)
T TIGR03551 192 --GIPTTATIMYGHV-ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLK 245 (343)
T ss_pred --CCcccceEEEecC-CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccc
Confidence 9999999999976 999999999999999999999999999977 9999853
No 67
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.78 E-value=1.8e-17 Score=185.07 Aligned_cols=187 Identities=21% Similarity=0.259 Sum_probs=147.0
Q ss_pred CCCCC-CCCCCcc-------Ccc---------CC-CcCCCCHHHHHHHHHHHHHCC--Cc--EEEEeecCCCCCCCCcCC
Q 006836 200 VGCLG-ACTYCKT-------KHA---------RG-HLGSYTVESLVGRVRTVIADG--VK--EVWLSSEDTGAYGRDIGV 257 (629)
Q Consensus 200 rGCp~-~CsFC~i-------p~~---------rG-~~Rsr~~e~Iv~Ei~~l~~~G--vk--eI~L~g~d~~~yg~d~~~ 257 (629)
--||+ +|.||-- |.. |+ +.+..|..++.++++++...| ++ |+.|.|.+++++..+.
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y-- 153 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDY-- 153 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHH--
Confidence 44995 6999963 211 22 356678999999999999866 32 5689999999887653
Q ss_pred CHHHHHHHHHHhCCC----------------------CCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCC
Q 006836 258 NLPILLNAIVAELPP----------------------DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315 (629)
Q Consensus 258 ~l~eLL~~L~~~i~~----------------------~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESg 315 (629)
...+++.+.+.++. .....++++ ++|+.+++.. +..+. ..+ ++.+.+|+||+
T Consensus 154 -~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiE-tRPD~i~~e~--L~~L~-~~G-~~rVslGVQS~ 227 (522)
T TIGR01211 154 -QEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIE-TRPDYCREEH--IDRML-KLG-ATRVELGVQTI 227 (522)
T ss_pred -HHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEE-EcCCcCCHHH--HHHHH-HcC-CCEEEEECccC
Confidence 33444444433321 012345555 6999887744 44443 333 79999999999
Q ss_pred CHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh---cCCCeEEEEeceeCCCCcc
Q 006836 316 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE---YKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 316 sd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~---l~~d~v~i~~ysP~PGTpa 392 (629)
++++|+.|||+++.+++.++++.++++ |+.+..|||+|+||||.+++.+|++.+.+ ++++.+.++++.+.|||++
T Consensus 228 ~d~VL~~inRght~~~v~~Ai~~lr~~--G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L 305 (522)
T TIGR01211 228 YNDILERTKRGHTVRDVVEATRLLRDA--GLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTEL 305 (522)
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHH
Confidence 999999999999999999999999999 99999999999999999999999999985 8999999999999999999
Q ss_pred ccCC
Q 006836 393 ARMK 396 (629)
Q Consensus 393 ~~~~ 396 (629)
+++.
T Consensus 306 ~~~~ 309 (522)
T TIGR01211 306 YELW 309 (522)
T ss_pred HHHH
Confidence 9753
No 68
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.77 E-value=2.9e-17 Score=165.51 Aligned_cols=191 Identities=20% Similarity=0.362 Sum_probs=140.2
Q ss_pred EEEeCCCCCCC--------CCCCccCccCCC---cCCCCHH-HHHHHHHHHHHC--CCcEEEEeecCCCCCCCCcCCCHH
Q 006836 195 ILPINVGCLGA--------CTYCKTKHARGH---LGSYTVE-SLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLP 260 (629)
Q Consensus 195 ~V~isrGCp~~--------CsFC~ip~~rG~---~Rsr~~e-~Iv~Ei~~l~~~--GvkeI~L~g~d~~~yg~d~~~~l~ 260 (629)
.|-..-.||++ |+||..... |. .+..|+. ++-++++.+.+. +.+.+...-.-+++|.. .
T Consensus 27 ~ld~GF~CPNRDGti~rGGCtFC~~~g~-~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TNTyAp------v 99 (312)
T COG1242 27 TLDGGFSCPNRDGTIGRGGCTFCSVAGS-GDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAYTNTYAP------V 99 (312)
T ss_pred eccCCCCCCCCCCcccCCceeeecCCCC-CccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEeccccccCc------H
Confidence 34455568875 999977542 21 2333554 344444444432 33444333223445532 5
Q ss_pred HHHHHHHHh-CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHH
Q 006836 261 ILLNAIVAE-LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339 (629)
Q Consensus 261 eLL~~L~~~-i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~l 339 (629)
+.|+++.+. +...++..+.++ ++|+.+.+..-++++-+... ..-++.+|+||.++++|+.+||+|+.+.|.+++.++
T Consensus 100 evLre~ye~aL~~~~VVGLsIg-TRPDClpd~VldlL~e~~~r-~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~ 177 (312)
T COG1242 100 EVLREMYEQALSEAGVVGLSIG-TRPDCLPDDVLDLLAEYNKR-YEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRL 177 (312)
T ss_pred HHHHHHHHHHhCcCCeeEEeec-CCCCCCcHHHHHHHHHHhhh-eEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHH
Confidence 555555432 333366777777 89998877554443333222 467899999999999999999999999999999999
Q ss_pred HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC
Q 006836 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396 (629)
Q Consensus 340 r~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~ 396 (629)
|++ ||.+.+++|+|+||||.+++.+|++.+..++++-+.++++....|||+.++.
T Consensus 178 rkr--gIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y 232 (312)
T COG1242 178 RKR--GIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMY 232 (312)
T ss_pred HHc--CCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHH
Confidence 999 9999999999999999999999999999999999999999999999998874
No 69
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.76 E-value=3.4e-17 Score=157.65 Aligned_cols=185 Identities=24% Similarity=0.392 Sum_probs=146.5
Q ss_pred EEeCCCCCCCCCCCccCccCCCcCCCCH--HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 006836 196 LPINVGCLGACTYCKTKHARGHLGSYTV--ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (629)
Q Consensus 196 V~isrGCp~~CsFC~ip~~rG~~Rsr~~--e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~ 273 (629)
+.+++||+++|.||..+...+.....+. +++.+.+......+.+.+.++|.+...+. .+.++++.+.+..+
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~~-----~~~~~i~~~~~~~~-- 73 (204)
T cd01335 1 LELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYP-----ELAELLRRLKKELP-- 73 (204)
T ss_pred CccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCCccH-----hHHHHHHHHHhhCC--
Confidence 3678999999999999877654433333 46666666666778899999887765542 56888888876432
Q ss_pred CCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHhCCCCEEEEEE
Q 006836 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIATDI 352 (629)
Q Consensus 274 ~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~-R~~t~e~~~e~I~~lr~~~pgi~i~td~ 352 (629)
...+++. ++...+.+.. +..+.+. + +..+.++++|+++..++.++ ++.+.+++.+.++.+++. ++.+.+.+
T Consensus 74 -~~~~~i~-T~~~~~~~~~--~~~l~~~-g-~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~ 145 (204)
T cd01335 74 -GFEISIE-TNGTLLTEEL--LKELKEL-G-LDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA--GLGLSTTL 145 (204)
T ss_pred -CceEEEE-cCcccCCHHH--HHHHHhC-C-CceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHc--CCCceEEE
Confidence 3456664 4554433322 3333333 2 68999999999999999998 788999999999999999 99999999
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEeceeCCCCccccC
Q 006836 353 ICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPAARM 395 (629)
Q Consensus 353 IvGfPGETeedf~eTl~fl~~l~-~d~v~i~~ysP~PGTpa~~~ 395 (629)
|+|.|+++.+++.++++++.++. ++.+++++|+|.||||++..
T Consensus 146 i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~~~ 189 (204)
T cd01335 146 LVGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLELA 189 (204)
T ss_pred EEecCCChhHHHHHHHHHHHhhcCcchhhhhhhcccCCCeeeec
Confidence 99999999999999999999998 99999999999999999843
No 70
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.76 E-value=1.8e-17 Score=177.48 Aligned_cols=196 Identities=21% Similarity=0.285 Sum_probs=145.4
Q ss_pred EEEeCCCCCCCCCCCccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 006836 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (629)
Q Consensus 195 ~V~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~ 272 (629)
.+.++.||+++|.||......+. .+.+++++|+++++.+.+.|+++|.|+|........ ..+.++++.|.+..+
T Consensus 44 ~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~---~~~~~li~~Ik~~~~- 119 (340)
T TIGR03699 44 NINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVAYGGTQILLQGGVNPDLGL---DYYEDLFRAIKARFP- 119 (340)
T ss_pred ccccchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 46679999999999986544442 346899999999999999999999998764332221 235678888876432
Q ss_pred CCCceEEEeecCCcchhH-------HHHHHHHHHhCCCcccccc-cccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhC
Q 006836 273 DGSTMLRIGMTNPPFILE-------HLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELV 343 (629)
Q Consensus 273 ~~~~~iri~~~~p~~i~~-------~l~el~~l~~~~~~~~~l~-IGlESgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~ 343 (629)
. +.+....+..+.. ..++..+.++..+ +.+++ .|+|+.++++++.+.+ +.+.+++.++++.++++
T Consensus 120 -~---i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG-~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~- 193 (340)
T TIGR03699 120 -H---IHIHSFSPVEIVYIAKKEGLSLREVLERLKEAG-LDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKL- 193 (340)
T ss_pred -C---cCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcC-CCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHc-
Confidence 1 2221122221110 0123444455555 45665 6999999999999965 57999999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC----CCCccccCCCCCHHH
Q 006836 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARMKKVPSAV 402 (629)
Q Consensus 344 pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~----PGTpa~~~~~v~~~~ 402 (629)
|+.+.+++|+|+ |||.+|+.+++.++++++.+...+..|.|. +|||+++.+.+++.+
T Consensus 194 -Gi~v~~~~iiGl-gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e 254 (340)
T TIGR03699 194 -GLPTTATMMFGH-VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTE 254 (340)
T ss_pred -CCCccceeEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHH
Confidence 999999999996 999999999999999999888777777774 799998766666543
No 71
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.76 E-value=1.6e-17 Score=178.58 Aligned_cols=196 Identities=17% Similarity=0.209 Sum_probs=149.4
Q ss_pred EEEEeCCCCCCCCCCCccCccCC---CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 006836 194 EILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG---~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i 270 (629)
.+|..+.||+++|+||......+ .++ +++|+|+++++...+.|+++|.|++.+...+.. ..+.++++.|.+.+
T Consensus 50 ~~in~Tn~C~~~C~FCa~~~~~~~~~~y~-l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~---~~~~e~i~~Ik~~~ 125 (351)
T TIGR03700 50 RHLNYTNICVNGCAFCAFQRERGEPGAYA-MSLEEIVARVKEAYAPGATEVHIVGGLHPNLPF---EWYLDMIRTLKEAY 125 (351)
T ss_pred CCcccccccccCCccCceeCCCCCcccCC-CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCH---HHHHHHHHHHHHHC
Confidence 35788999999999999876544 233 799999999999999999999999764433221 35678888888765
Q ss_pred CCCCCceEEEeecCCcchh-------HHHHHHHHHHhCCCccccc-ccccCCCCHHHHHhhcCC-CCHHHHHHHHHHHHH
Q 006836 271 PPDGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIE 341 (629)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~~~~~l-~IGlESgsd~vLk~M~R~-~t~e~~~e~I~~lr~ 341 (629)
+ .+.+....|..+. ...++..+.++..+ +..+ +.|+||+++++++.++++ .+.+++.++++.+++
T Consensus 126 p-----~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAG-ld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~ 199 (351)
T TIGR03700 126 P-----DLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAG-LDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHE 199 (351)
T ss_pred C-----CceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcC-CCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHH
Confidence 4 2333322332111 01123233344455 4555 479999999999999986 577899999999999
Q ss_pred hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC----CCCccccC--CCCCHHH
Q 006836 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARM--KKVPSAV 402 (629)
Q Consensus 342 ~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~----PGTpa~~~--~~v~~~~ 402 (629)
+ |+.+.+.+|+|+ |||++|..+.+..+++++.+..++..|.|. +|||+... +..+..+
T Consensus 200 ~--Gi~~~sg~i~Gl-gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e 263 (351)
T TIGR03700 200 L--GLKTNATMLYGH-IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLD 263 (351)
T ss_pred c--CCCcceEEEeeC-CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHH
Confidence 9 999999999997 999999999999999999999899999999 59999876 5555543
No 72
>PRK08445 hypothetical protein; Provisional
Probab=99.76 E-value=2.1e-17 Score=177.22 Aligned_cols=191 Identities=16% Similarity=0.195 Sum_probs=143.3
Q ss_pred EEEeCCCCCCCCCCCccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 006836 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (629)
Q Consensus 195 ~V~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~ 272 (629)
.|.+|.||+++|.||......+ ..+.+++|+|++.++.+.+.|.++|++.|.+...+.. ..+.++++.|.+.++
T Consensus 45 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~---e~~~~l~~~Ik~~~p- 120 (348)
T PRK08445 45 NINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKI---EWYENLVSHIAQKYP- 120 (348)
T ss_pred ccccccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 4788999999999999876432 2235699999999999999999999999765554433 346888889988765
Q ss_pred CCCceEEEeecCCcchhH----HHHHHHHHHhCCCccccc-ccccCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHhCCCC
Q 006836 273 DGSTMLRIGMTNPPFILE----HLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIELVPGM 346 (629)
Q Consensus 273 ~~~~~iri~~~~p~~i~~----~l~el~~l~~~~~~~~~l-~IGlESgsd~vLk~M-~R~~t~e~~~e~I~~lr~~~pgi 346 (629)
...+..++.....++.. ..++..+.++..+ +.++ ++|+||+++++++.+ +++.+.+++.++++.++++ |+
T Consensus 121 -~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAG-l~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~--Gi 196 (348)
T PRK08445 121 -TITIHGFSAVEIDYIAKISKISIKEVLERLQAKG-LSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLI--GM 196 (348)
T ss_pred -CcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcC-CCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHc--CC
Confidence 33333222221222211 0123334455556 4555 699999999999999 6789999999999999999 99
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeE-----EEEeceeCCCCccccC
Q 006836 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQV-----HISQFYPRPGTPAARM 395 (629)
Q Consensus 347 ~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v-----~i~~ysP~PGTpa~~~ 395 (629)
.+.+.+|+|+ +||.+|+.+.+.++++++.+.. -+..|.| ||||++..
T Consensus 197 ~~~sg~i~G~-~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p-~~tpl~~~ 248 (348)
T PRK08445 197 KSTATMMFGT-VENDEEIIEHWERIRDLQDETGGFRAFILWSFQP-DNTPLKEE 248 (348)
T ss_pred eeeeEEEecC-CCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCC-CCCccccc
Confidence 9999999997 6999999999999999987653 3334455 99999753
No 73
>PRK08508 biotin synthase; Provisional
Probab=99.74 E-value=1.2e-16 Score=166.71 Aligned_cols=187 Identities=17% Similarity=0.244 Sum_probs=140.8
Q ss_pred eCCCCCCCCCCCccCccC-C---CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 006836 198 INVGCLGACTYCKTKHAR-G---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (629)
Q Consensus 198 isrGCp~~CsFC~ip~~r-G---~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~ 273 (629)
.++||+++|.||+.+... + .++.+++|+|+++++.+.+.|+++|.+++.... +.......+.++++.+.+..+
T Consensus 13 ~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~-~~~~~~e~~~ei~~~ik~~~p-- 89 (279)
T PRK08508 13 SSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRG-LDDKKLEYVAEAAKAVKKEVP-- 89 (279)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCC-CCcccHHHHHHHHHHHHhhCC--
Confidence 478999999999987643 2 355689999999999999999999998643222 111111245666677765433
Q ss_pred CCce-EEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Q 006836 274 GSTM-LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352 (629)
Q Consensus 274 ~~~~-iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~ 352 (629)
+..+ ...++ +++. .+.++ +.++ +..+++++|+ +++.++.+..++++++..+.++.++++ |+.+.+.+
T Consensus 90 ~l~i~~s~G~-----~~~e--~l~~L-k~aG-ld~~~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~sg~ 157 (279)
T PRK08508 90 GLHLIACNGT-----ASVE--QLKEL-KKAG-IFSYNHNLET-SKEFFPKICTTHTWEERFQTCENAKEA--GLGLCSGG 157 (279)
T ss_pred CcEEEecCCC-----CCHH--HHHHH-HHcC-CCEEcccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHc--CCeeccee
Confidence 2221 12221 2221 23333 3344 7899999999 578899998899999999999999999 99999999
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHH
Q 006836 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401 (629)
Q Consensus 353 IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~ 401 (629)
|+|+ |||++|..+++.++++++++.+-++.|.|.||||+.. +..+..
T Consensus 158 I~Gl-GEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~-~~~~~~ 204 (279)
T PRK08508 158 IFGL-GESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKA-PTLSAD 204 (279)
T ss_pred EEec-CCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCC-CCCCHH
Confidence 9997 9999999999999999999999999999999999864 344543
No 74
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.73 E-value=1.5e-16 Score=174.31 Aligned_cols=214 Identities=21% Similarity=0.291 Sum_probs=161.4
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCC---cCCCCHHHHHHHHHHHHHCC-----CcEEEEeecCCCCCCCCcCCCHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIADG-----VKEVWLSSEDTGAYGRDIGVNLPIL 262 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~---~Rsr~~e~Iv~Ei~~l~~~G-----vkeI~L~g~d~~~yg~d~~~~l~eL 262 (629)
+...||.|- =|...|.||........ ....-.+.+++|++...... ++.|+|.|+.-+.... ..+..|
T Consensus 34 ~~slYiHiP-FC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~---~~l~~l 109 (416)
T COG0635 34 PLSLYIHIP-FCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSP---EQLERL 109 (416)
T ss_pred ceEEEEEcc-cccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCH---HHHHHH
Confidence 455566553 49999999998754322 11123577888888877642 5677777654333322 467888
Q ss_pred HHHHHHhCC-CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHH
Q 006836 263 LNAIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341 (629)
Q Consensus 263 L~~L~~~i~-~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~ 341 (629)
+..|.+.++ ......+.+. ++|..++... +. .++..+ ++++++||||+++++||.++|.++.++..++++.+++
T Consensus 110 l~~l~~~~~~~~~~~EitiE-~nP~~~~~e~--~~-~l~~~G-vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~ 184 (416)
T COG0635 110 LKALRELFNDLDPDAEITIE-ANPGTVEAEK--FK-ALKEAG-VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARK 184 (416)
T ss_pred HHHHHHhcccCCCCceEEEE-eCCCCCCHHH--HH-HHHHcC-CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 888887762 2344788887 6999877643 33 334444 6899999999999999999999999999999999999
Q ss_pred hCCCC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-C---CCH-HHHHHHHHHHHHHHH
Q 006836 342 LVPGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K---VPS-AVVKKRSRELTSVFE 415 (629)
Q Consensus 342 ~~pgi-~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~---v~~-~~~~~R~~~L~~l~~ 415 (629)
. |+ .++.|+|+|+|++|.+++.++++.+.+++++++.++.|+..|+|++++.. . +|+ +.+.++.+...+...
T Consensus 185 ~--g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~ 262 (416)
T COG0635 185 A--GFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLE 262 (416)
T ss_pred c--CCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHH
Confidence 8 74 58889999999999999999999999999999999999999999999875 3 554 334444454554444
No 75
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.72 E-value=6e-17 Score=151.86 Aligned_cols=162 Identities=20% Similarity=0.375 Sum_probs=125.6
Q ss_pred EEeCCCCCCCCCCCccCc--cCCCcCCCCHHHHHHHHHHH-HHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 006836 196 LPINVGCLGACTYCKTKH--ARGHLGSYTVESLVGRVRTV-IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (629)
Q Consensus 196 V~isrGCp~~CsFC~ip~--~rG~~Rsr~~e~Iv~Ei~~l-~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~ 272 (629)
|++++||+++|.||..+. ..+..+.+++++++++++.+ ...|.+.+.++|++...+ .++.+++..+.+...
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~-----~~~~~~~~~~~~~~~- 74 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLH-----PDFIELLELLRKIKK- 74 (166)
T ss_dssp EEEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGS-----CHHHHHHHHHHHCTC-
T ss_pred CEECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcc-----hhHHHHHHHHHHhhc-
Confidence 578999999999999987 45567889999999999999 588888888887665554 345777777766421
Q ss_pred CCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHH-HHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 006836 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA-VLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (629)
Q Consensus 273 ~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~-vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td 351 (629)
....+.+. +++....+. .+..+.+.+ +.++.+++||.+++ +++.|+++.+.+++.++++.++++ |+.....
T Consensus 75 -~~~~i~~~-t~~~~~~~~--~l~~l~~~~--~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--g~~~~~~ 146 (166)
T PF04055_consen 75 -RGIRISIN-TNGTLLDEE--LLDELKKLG--VDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEA--GIPRVII 146 (166)
T ss_dssp -TTEEEEEE-EESTTHCHH--HHHHHHHTT--CSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHT--TSETEEE
T ss_pred -cccceeee-ccccchhHH--HHHHHHhcC--ccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHc--CCCcEEE
Confidence 23445554 444444222 234444443 68999999999999 999999999999999999999999 8876789
Q ss_pred EEEcCCCCCHHHHHHHHHHH
Q 006836 352 IICGFPGETDEDFNQTVNLI 371 (629)
Q Consensus 352 ~IvGfPGETeedf~eTl~fl 371 (629)
+|+|+||||+++++++++|+
T Consensus 147 ~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 147 FIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp EEEEBTTTSHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHhCcC
Confidence 99999999999999999986
No 76
>PLN02389 biotin synthase
Probab=99.72 E-value=6.4e-16 Score=167.18 Aligned_cols=198 Identities=16% Similarity=0.239 Sum_probs=147.2
Q ss_pred eEEEEEe-CCCCCCCCCCCccCccC--C--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-CCCHHHHHHH
Q 006836 192 FVEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNA 265 (629)
Q Consensus 192 ~~a~V~i-srGCp~~CsFC~ip~~r--G--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~-~~~l~eLL~~ 265 (629)
+...+.+ +.||+++|.||...... + .++.+++|+|+++++.+.+.|+++|.++..-.+..+.+. ...+.++++.
T Consensus 82 ~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ 161 (379)
T PLN02389 82 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKE 161 (379)
T ss_pred EEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHH
Confidence 3456667 79999999999986432 2 255689999999999999999999988632112233221 1234555555
Q ss_pred HHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 006836 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (629)
Q Consensus 266 L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg 345 (629)
+.+ . +. .+. .....+++.. +..+ +.++ +.++++.+++ +++..+.+..+++.+++++.++.+++. |
T Consensus 162 ik~-~---~l-~i~---~s~G~l~~E~--l~~L-keAG-ld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~--G 226 (379)
T PLN02389 162 IRG-M---GM-EVC---CTLGMLEKEQ--AAQL-KEAG-LTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREA--G 226 (379)
T ss_pred Hhc-C---Cc-EEE---ECCCCCCHHH--HHHH-HHcC-CCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHc--C
Confidence 542 2 22 222 2222333322 3333 3444 6788999999 788999998889999999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhc--CCCeEEEEeceeCCCCccccCCCCCHHHHHH
Q 006836 346 MQIATDIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405 (629)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~~l--~~d~v~i~~ysP~PGTpa~~~~~v~~~~~~~ 405 (629)
+.+.+.+|+|+ |||.+|..+++.+++++ .++.+.+++|+|.||||+++.+.++..+..+
T Consensus 227 i~v~sg~IiGl-gEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr 287 (379)
T PLN02389 227 ISVCSGGIIGL-GEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVR 287 (379)
T ss_pred CeEeEEEEECC-CCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHH
Confidence 99999999999 99999999999999999 5789999999999999999887777654433
No 77
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.66 E-value=4.5e-15 Score=160.74 Aligned_cols=196 Identities=14% Similarity=0.135 Sum_probs=147.2
Q ss_pred EEEEEeCCCCCCCCCCCccCccCC-CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 193 VEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG-~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
.+.|.++.+|+++|.||......+ ..+.+++++|+++++.+.+.|+++|.|++...... .+ ...+.++++.|.+.++
T Consensus 75 ~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~-~e~l~~~i~~Ik~~~p 152 (371)
T PRK09240 75 YTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLLTGEHEAK-VG-VDYIRRALPIAREYFS 152 (371)
T ss_pred EeceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CC-HHHHHHHHHHHHHhCC
Confidence 345677999999999999865433 24678999999999999999999999987543321 11 1345666666665432
Q ss_pred CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHhCCCCE-
Q 006836 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGMQ- 347 (629)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~---R~~t~e~~~e~I~~lr~~~pgi~- 347 (629)
.+.+. ..| ++. +++.. ++..+ +..+++++||.+++.++.++ ++++.++.++.++.++++ |+.
T Consensus 153 -----~i~i~-~g~--lt~--e~l~~-Lk~aG-v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~ 218 (371)
T PRK09240 153 -----SVSIE-VQP--LSE--EEYAE-LVELG-LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRA--GIRK 218 (371)
T ss_pred -----Cceec-cCC--CCH--HHHHH-HHHcC-CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 22332 233 232 22333 33444 78999999999999999996 578999999999999999 995
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCC------eEEEEeceeCCCCccccCCCCCHHHHHHH
Q 006836 348 IATDIICGFPGETDEDFNQTVNLIKEYKFP------QVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (629)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~~l~~d------~v~i~~ysP~PGTpa~~~~~v~~~~~~~R 406 (629)
+.+++|+|+ ||+.+|..+++..+++++.. .+.+..|.|.|| |+...+.+++.+..+.
T Consensus 219 v~~g~i~Gl-ge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ 281 (371)
T PRK09240 219 IGLGALLGL-SDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQL 281 (371)
T ss_pred eceEEEecC-CccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHH
Confidence 999999999 67999999999888888753 678889999999 8876667887655443
No 78
>PRK15108 biotin synthase; Provisional
Probab=99.64 E-value=1.5e-14 Score=155.08 Aligned_cols=196 Identities=17% Similarity=0.242 Sum_probs=145.2
Q ss_pred EEEEEe-CCCCCCCCCCCccCccC--C--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 006836 193 VEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (629)
Q Consensus 193 ~a~V~i-srGCp~~CsFC~ip~~r--G--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~ 267 (629)
...+.+ +.+|+++|.||...... + +.+..++|+|++.++.+.+.|+++|.+.+........+ ...+.++++.+.
T Consensus 43 ~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~-~e~i~~~i~~ik 121 (345)
T PRK15108 43 STLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERD-MPYLEQMVQGVK 121 (345)
T ss_pred EEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcch-HHHHHHHHHHHH
Confidence 445566 99999999999886422 2 24457999999999999999999997753211111111 123556666665
Q ss_pred HhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 006836 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (629)
Q Consensus 268 ~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~ 347 (629)
+ . +.. +.++ ...++.. .+.++ +.++ ..++++.++| +++....+..+++.+++++.++.++++ |+.
T Consensus 122 ~-~---~i~-v~~s---~G~ls~e--~l~~L-keAG-ld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~--G~~ 186 (345)
T PRK15108 122 A-M---GLE-TCMT---LGTLSES--QAQRL-ANAG-LDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--GIK 186 (345)
T ss_pred h-C---CCE-EEEe---CCcCCHH--HHHHH-HHcC-CCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHc--CCc
Confidence 3 2 222 2222 1123322 23333 3344 6889999999 899999998889999999999999999 999
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhc--CCCeEEEEeceeCCCCccccCCCCCHHHHHH
Q 006836 348 IATDIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405 (629)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~~l--~~d~v~i~~ysP~PGTpa~~~~~v~~~~~~~ 405 (629)
+.+.+|+|+ |||.+|..+.+..++++ ..+.+.++.|.|.||||+.+.+.+++...-+
T Consensus 187 v~sg~i~Gl-gEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr 245 (345)
T PRK15108 187 VCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIR 245 (345)
T ss_pred eeeEEEEeC-CCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHH
Confidence 999999998 99999999999999999 6788999999999999998877777654433
No 79
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.59 E-value=4.6e-14 Score=152.67 Aligned_cols=200 Identities=12% Similarity=0.141 Sum_probs=145.7
Q ss_pred EEEEEeCCCCCCCCCCCccCccCC-CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 193 VEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG-~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
.+.+..+.+|+++|.||......+ .....++|+|+++++.+.+.|+++|.+++...... .+ ...+.++++.+.+..+
T Consensus 74 ~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~-~e~l~eii~~Ik~~~p 151 (366)
T TIGR02351 74 FTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGFKEILLVTGESEKA-AG-VEYIAEAIKLAREYFS 151 (366)
T ss_pred EeeeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CC-HHHHHHHHHHHHHhCC
Confidence 345678999999999999864322 22456899999999999999999999986432221 11 1246667777765432
Q ss_pred CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHhCCCCE-
Q 006836 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGMQ- 347 (629)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~---R~~t~e~~~e~I~~lr~~~pgi~- 347 (629)
.+.+. +.| ++. +++..+. ..+ ..++++++||.+++.++.|+ +.++.++..+.++.++++ |+.
T Consensus 152 -----~i~Ie-i~~--lt~--e~~~~Lk-~aG-v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~ 217 (366)
T TIGR02351 152 -----SLAIE-VQP--LNE--EEYKKLV-EAG-LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKA--GMRK 217 (366)
T ss_pred -----ccccc-ccc--CCH--HHHHHHH-HcC-CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 12222 222 333 2233333 344 68999999999999999987 678999999999999999 997
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCC------CeEEEEeceeCCCCccccCCCCCHHHHHHHHHHH
Q 006836 348 IATDIICGFPGETDEDFNQTVNLIKEYKF------PQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410 (629)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~~l~~------d~v~i~~ysP~PGTpa~~~~~v~~~~~~~R~~~L 410 (629)
+.+++|+|+| |+.+|..+++..++.++. ..+.+..+.|.+| |+...+.+++....+....+
T Consensus 218 v~~g~i~Gl~-e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~ 284 (366)
T TIGR02351 218 IGIGALLGLD-DWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICAY 284 (366)
T ss_pred eceeEEEeCc-hhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHHH
Confidence 8999999995 588888888777777754 5788888999999 87666678877665554433
No 80
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.59 E-value=4.2e-14 Score=151.24 Aligned_cols=215 Identities=20% Similarity=0.211 Sum_probs=156.1
Q ss_pred eEEEEEeCCCCCC-CCCCCccC------ccC-C---------CcCCCCHHHHHHHHHHHHHCCCc----EEEEeecCCCC
Q 006836 192 FVEILPINVGCLG-ACTYCKTK------HAR-G---------HLGSYTVESLVGRVRTVIADGVK----EVWLSSEDTGA 250 (629)
Q Consensus 192 ~~a~V~isrGCp~-~CsFC~ip------~~r-G---------~~Rsr~~e~Iv~Ei~~l~~~Gvk----eI~L~g~d~~~ 250 (629)
.++...--.|||+ +|.||.-. ... | +.+.-|-.++...+++|...|.. |+.|.|..|++
T Consensus 67 VVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta 146 (515)
T COG1243 67 VVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTA 146 (515)
T ss_pred EEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccC
Confidence 3445555689998 99999654 222 1 13344678888899999887753 78888988887
Q ss_pred CCCCcCCCH-HHHHHHHH----------HhCC--CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCH
Q 006836 251 YGRDIGVNL-PILLNAIV----------AELP--PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317 (629)
Q Consensus 251 yg~d~~~~l-~eLL~~L~----------~~i~--~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd 317 (629)
...+....| ...++++. ..-. ......++++ +.|+.+.+.. +..|++.+ +..+.+|+||..|
T Consensus 147 ~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiE-TRPD~~~ee~--ld~mlkyG--~TrVELGVQSiyd 221 (515)
T COG1243 147 LSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIE-TRPDYIDEEH--LDQMLKYG--VTRVELGVQSIYD 221 (515)
T ss_pred CCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEe-cCccccCHHH--HHHHHhcC--CcEEEEeeeeHHH
Confidence 655432222 22222322 0000 0012347775 8999988744 66666654 7999999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC---CCeEEEEeceeCCCCcccc
Q 006836 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK---FPQVHISQFYPRPGTPAAR 394 (629)
Q Consensus 318 ~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~---~d~v~i~~ysP~PGTpa~~ 394 (629)
+||++++||||.+++.++.+.++++ |+.+..++|.|+||-+.+--.+++..+-+.+ +|.+.|+|--..+||++++
T Consensus 222 ~Vl~~~~RGHtvedv~~a~rLlKd~--GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~ 299 (515)
T COG1243 222 DVLERTKRGHTVEDVVEATRLLKDA--GFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYE 299 (515)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhc--CcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHH
Confidence 9999999999999999999999999 9999999999999988765555665555555 8999999999999999999
Q ss_pred CC------CCCHHHHHHHHHHHHHH
Q 006836 395 MK------KVPSAVVKKRSRELTSV 413 (629)
Q Consensus 395 ~~------~v~~~~~~~R~~~L~~l 413 (629)
|+ ..+.++.-+....+..+
T Consensus 300 mwk~G~Ykpy~~EEaVeli~~i~~~ 324 (515)
T COG1243 300 MWKRGLYKPYTTEEAVELIVEIYRL 324 (515)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHh
Confidence 85 25566666665555533
No 81
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.58 E-value=8.2e-14 Score=146.57 Aligned_cols=194 Identities=21% Similarity=0.333 Sum_probs=145.7
Q ss_pred eEEEEEeCCCC-CCCCCCCccCccC--C--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 006836 192 FVEILPINVGC-LGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (629)
Q Consensus 192 ~~a~V~isrGC-p~~CsFC~ip~~r--G--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L 266 (629)
....|.+..|| |-+|.||...... | ++..+++|+|+++++.+.+.|...+.+...--+ ++++. ..+.+.++.+
T Consensus 50 l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~~-~~i~~~v~~V 127 (335)
T COG0502 50 LSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDM-EEVVEAIKAV 127 (335)
T ss_pred EEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCccH-HHHHHHHHHH
Confidence 34567776665 9999999886532 2 356788999999999999999666655532122 22221 3455556666
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 006836 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (629)
Q Consensus 267 ~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi 346 (629)
.+.+. -...+.+++++ +.. +.++ +.++ ..+...-+|| |++-.+.+.-+++.++..+.++.++++ |+
T Consensus 128 k~~~~--le~c~slG~l~-----~eq--~~~L-~~aG-vd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~--Gi 193 (335)
T COG0502 128 KEELG--LEVCASLGMLT-----EEQ--AEKL-ADAG-VDRYNHNLET-SPEFYENIITTRTYEDRLNTLENVREA--GI 193 (335)
T ss_pred HHhcC--cHHhhccCCCC-----HHH--HHHH-HHcC-hhheeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHc--CC
Confidence 54442 11233444332 221 2233 3344 5777788999 999999999999999999999999999 99
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEeceeCCCCccccCCCCCHHH
Q 006836 347 QIATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPAARMKKVPSAV 402 (629)
Q Consensus 347 ~i~td~IvGfPGETeedf~eTl~fl~~l~-~d~v~i~~ysP~PGTpa~~~~~v~~~~ 402 (629)
.+.+..|+|+ |||.+|-.+.+.++.++. ++.|-|+.|.|.||||+.+.+.++..+
T Consensus 194 ~vcsGgI~Gl-GEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e 249 (335)
T COG0502 194 EVCSGGIVGL-GETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFE 249 (335)
T ss_pred ccccceEecC-CCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHH
Confidence 9999999999 999999999999999998 999999999999999999988877644
No 82
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.58 E-value=3.7e-14 Score=153.70 Aligned_cols=191 Identities=18% Similarity=0.266 Sum_probs=139.5
Q ss_pred EEEeCCCCCCCCCCCccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 006836 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (629)
Q Consensus 195 ~V~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~ 272 (629)
.|+++..|+.+|.||......+ ....+++|+|++.++.+.+.|+++|.|++..-.... + ...+.++++.+++.++
T Consensus 63 ~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~-~-~e~~~~~i~~ik~~~~- 139 (371)
T PRK07360 63 NINFTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAAD-S-LEFYLEILEAIKEEFP- 139 (371)
T ss_pred CcccchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC-c-HHHHHHHHHHHHHhCC-
Confidence 4677999999999999865432 222489999999999999999999999975322221 0 1235677777776443
Q ss_pred CCCceEEEeecCCcch-------hHHHHHHHHHHhCCCcccccc-cccCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhC
Q 006836 273 DGSTMLRIGMTNPPFI-------LEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELV 343 (629)
Q Consensus 273 ~~~~~iri~~~~p~~i-------~~~l~el~~l~~~~~~~~~l~-IGlESgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~ 343 (629)
.+.+....|..+ ....++..+.++.+++ ..++ -+-+..++++.+.+..+ .+.+++.+.++.++++
T Consensus 140 ----~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGl-d~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~- 213 (371)
T PRK07360 140 ----DIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGL-DSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKL- 213 (371)
T ss_pred ----CcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCC-CcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHc-
Confidence 233322222111 0001122233444554 4443 56777888998888775 6999999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCC----CCccccCC
Q 006836 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP----GTPAARMK 396 (629)
Q Consensus 344 pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~P----GTpa~~~~ 396 (629)
|+.+.+.+|+|+ |||.+|..+.+.++++++.+..++..|.|.| |||+....
T Consensus 214 -Gl~~~sg~i~G~-gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~ 268 (371)
T PRK07360 214 -GLPTTSTMMYGH-VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERG 268 (371)
T ss_pred -CCCceeeEEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCcccccc
Confidence 999999999998 9999999999999999999999999999865 99998654
No 83
>PRK08444 hypothetical protein; Provisional
Probab=99.57 E-value=9.4e-14 Score=149.16 Aligned_cols=197 Identities=15% Similarity=0.136 Sum_probs=149.5
Q ss_pred EEEeCCCCCCCCCCCccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 006836 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (629)
Q Consensus 195 ~V~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~ 272 (629)
+|..+.-|..+|.||++....+ .....++|+|++.++.+.+.|+++|.+++..-..+.. ..+.++++.|.+.++
T Consensus 52 ~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~---e~y~e~ir~Ik~~~p- 127 (353)
T PRK08444 52 HINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGY---EWYLEIFKKIKEAYP- 127 (353)
T ss_pred CcccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 4677899999999999865433 2234799999999999999999999999854333321 246788888887654
Q ss_pred CCCceEEEeecCCcchhH-------HHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCC-CHHHHHHHHHHHHHhCC
Q 006836 273 DGSTMLRIGMTNPPFILE-------HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY-TLSDFRTVVDTLIELVP 344 (629)
Q Consensus 273 ~~~~~iri~~~~p~~i~~-------~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~-t~e~~~e~I~~lr~~~p 344 (629)
.+.+....|..+.. ..++....++++++-.+-+=|.|..++++.+.+..++ +.+++.+.++.++++
T Consensus 128 ----~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~-- 201 (353)
T PRK08444 128 ----NLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKK-- 201 (353)
T ss_pred ----CceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHc--
Confidence 34444333333210 1123344455555433334479999999999998754 668999999999999
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC----CCCccccCCCCCHHH
Q 006836 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARMKKVPSAV 402 (629)
Q Consensus 345 gi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~----PGTpa~~~~~v~~~~ 402 (629)
|+...+.+|+|+ |||.+|..+.+..+++++.+...|..|.|. +|||+...+.++..+
T Consensus 202 Gi~~~sg~l~G~-gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e 262 (353)
T PRK08444 202 GKMSNATMLFGH-IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQE 262 (353)
T ss_pred CCCccceeEEec-CCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHH
Confidence 999999999999 599999999999999999999999999999 999998766666543
No 84
>PRK05926 hypothetical protein; Provisional
Probab=99.54 E-value=2.1e-13 Score=147.36 Aligned_cols=186 Identities=16% Similarity=0.185 Sum_probs=140.4
Q ss_pred EEeCCCCCCCCCCCccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 006836 196 LPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (629)
Q Consensus 196 V~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~ 273 (629)
+..+..|+.+|.||+.....+ .....++|+|+++++.. +.|+++|.+++..-..+.. ..+.++++.|.+.++
T Consensus 72 in~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~~---e~~~e~i~~Ik~~~p-- 145 (370)
T PRK05926 72 LYPTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSCNL---AYYEELFSKIKQNFP-- 145 (370)
T ss_pred eecCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCCCH---HHHHHHHHHHHHhCC--
Confidence 345999999999999755443 24567899999999998 7899999999754332211 346788888887654
Q ss_pred CCceEEEeecCCcchhH-------HHHHHHHHHhCCCcccccc-cccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCC
Q 006836 274 GSTMLRIGMTNPPFILE-------HLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVP 344 (629)
Q Consensus 274 ~~~~iri~~~~p~~i~~-------~l~el~~l~~~~~~~~~l~-IGlESgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~p 344 (629)
.+.+..+.+..+.. ..++..+.++..+ +..++ -|.|+.++++.+.+.. +.+.+++.++++.++++
T Consensus 146 ---~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAG-l~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~-- 219 (370)
T PRK05926 146 ---DLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAG-LDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSL-- 219 (370)
T ss_pred ---CeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcC-cCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc--
Confidence 33333233221110 1133334455555 44555 5799999999998865 56889999999999999
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEecee----CCCCcccc
Q 006836 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP----RPGTPAAR 394 (629)
Q Consensus 345 gi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP----~PGTpa~~ 394 (629)
|+.+.+.+|+| +|||.+|..+.+..+++++.+.+.|..|.| -++||+..
T Consensus 220 Gi~~~sgmi~G-~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~ 272 (370)
T PRK05926 220 GIPSNATMLCY-HRETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGK 272 (370)
T ss_pred CCcccCceEEe-CCCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccc
Confidence 99999998888 599999999999999999999999999999 78888763
No 85
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.54 E-value=1.1e-12 Score=139.87 Aligned_cols=191 Identities=18% Similarity=0.258 Sum_probs=144.8
Q ss_pred EEEEEeCCCCCCCCCCCccCcc---CCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 006836 193 VEILPINVGCLGACTYCKTKHA---RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~---rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~ 269 (629)
+..|.++.+|+.+|.||..+.. .++.+..+++++.+.++.+.+.|++.|.|+|.+.+.+ .++.++++.+.+.
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~li~~i~~~ 92 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLR-----KDLEDIIAALAAL 92 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCc-----cCHHHHHHHHHhc
Confidence 4578999999999999987542 2446678999999999999899999999998765443 3578888888653
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-EE
Q 006836 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QI 348 (629)
Q Consensus 270 i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi-~i 348 (629)
. +...+.+. ++...+.+. +..+ ...+ ...+.++++|.+++..+.++++.+.+++.+.++.++++ |+ .+
T Consensus 93 -~--~~~~i~it-TNG~ll~~~---~~~L-~~ag-l~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~--g~~~v 161 (331)
T PRK00164 93 -P--GIRDLALT-TNGYLLARR---AAAL-KDAG-LDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAA--GLTPV 161 (331)
T ss_pred -C--CCceEEEE-cCchhHHHH---HHHH-HHcC-CCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHC--CCCcE
Confidence 2 33456654 555444432 2223 3333 57899999999999999999999999999999999998 77 66
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHH
Q 006836 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401 (629)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~ 401 (629)
...++ .+||.+++++.+.+++++++++ .+.+..|.|.++...+... .++.+
T Consensus 162 ~i~~v-v~~g~n~~ei~~l~~~~~~~gv-~v~~ie~~p~~~~~~~~~~~~~~~~ 213 (331)
T PRK00164 162 KVNAV-LMKGVNDDEIPDLLEWAKDRGI-QLRFIELMPTGEGNEWFRKHHLSGA 213 (331)
T ss_pred EEEEE-EECCCCHHHHHHHHHHHHhCCC-eEEEEEeeECCCCcchhhhcCCCHH
Confidence 65554 3689999999999999999997 4788889998776543332 34443
No 86
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.50 E-value=1.1e-12 Score=145.27 Aligned_cols=206 Identities=12% Similarity=0.180 Sum_probs=147.1
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCC-CCCCCCcCCCHHHHHHHHHHh
Q 006836 193 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDT-GAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~-~~yg~d~~~~l~eLL~~L~~~ 269 (629)
.+.|.+|..|+++|.||.+....+. .+..++|+|+++++.+.+.|++++.|++... ..++. ..+.++++.|.+.
T Consensus 85 fapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~---eyi~e~i~~I~~~ 161 (469)
T PRK09613 85 FAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDI---EYILESIKTIYST 161 (469)
T ss_pred EEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCH---HHHHHHHHHHHHh
Confidence 4567789999999999998754442 2457999999999999999999999976432 22211 3456677777653
Q ss_pred CCCCC-CceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHhCCC
Q 006836 270 LPPDG-STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLIELVPG 345 (629)
Q Consensus 270 i~~~~-~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R---~~t~e~~~e~I~~lr~~~pg 345 (629)
....+ ...+.+. +.| ++. +++..+. ..+ ...+++-.||.+.++++.++. +++.++-.++++.++++ |
T Consensus 162 ~~~~g~i~~v~in-ig~--lt~--eey~~Lk-eaG-v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~a--G 232 (469)
T PRK09613 162 KHGNGEIRRVNVN-IAP--TTV--ENYKKLK-EAG-IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEA--G 232 (469)
T ss_pred ccccCcceeeEEE-eec--CCH--HHHHHHH-HcC-CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHc--C
Confidence 21001 1234443 233 232 2344443 334 678889999999999999865 57999999999999999 9
Q ss_pred CE-EEEEEEEcCCCCCHHHHHHHHHHHHhc------CCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHH
Q 006836 346 MQ-IATDIICGFPGETDEDFNQTVNLIKEY------KFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE 415 (629)
Q Consensus 346 i~-i~td~IvGfPGETeedf~eTl~fl~~l------~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~ 415 (629)
+. +.+++|+|+ ||+.+|...++..++.+ +++.+.+..|.|.||||+.+.+ .++++.. .++..+.+
T Consensus 233 i~~Vg~G~L~GL-ge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~----lriiA~~R 305 (469)
T PRK09613 233 IDDVGIGVLFGL-YDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDF----KKIVAILR 305 (469)
T ss_pred CCeeCeEEEEcC-CCCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHH----HHHHHHHH
Confidence 97 999999998 55666666667667666 5778899999999999997776 5777543 33444444
No 87
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.49 E-value=3.5e-12 Score=136.16 Aligned_cols=196 Identities=17% Similarity=0.226 Sum_probs=144.4
Q ss_pred EEEEEeCCCCCCCCCCCccCcc--CCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 006836 193 VEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~--rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i 270 (629)
+..|.++.+||++|.||..... ..+....+.+++.+-++.+.+.|++.|.|+|.+-..+ .++.++++.+.+ .
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr-----~dl~~li~~i~~-~ 88 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVR-----RGCDQLVARLGK-L 88 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCcc-----ccHHHHHHHHHh-C
Confidence 4567899999999999975421 1234567899999999988889999999998665443 357888888865 3
Q ss_pred CCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-EEE
Q 006836 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIA 349 (629)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi-~i~ 349 (629)
. +...+.+. +|...+.+.. +.+...+ ..++.++++|.+++.++.++++.+.+++.+.++.++++ |+ .+.
T Consensus 89 ~--~l~~i~it-TNG~ll~~~~----~~L~~aG-l~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~--Gi~~v~ 158 (329)
T PRK13361 89 P--GLEELSLT-TNGSRLARFA----AELADAG-LKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAA--GFERIK 158 (329)
T ss_pred C--CCceEEEE-eChhHHHHHH----HHHHHcC-CCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHc--CCCceE
Confidence 2 33356654 6665444322 2233344 67899999999999999999989999999999999999 87 566
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHH
Q 006836 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406 (629)
Q Consensus 350 td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R 406 (629)
..+++ +||++.+++.+.++|+.+++++ +.+..|+|..+..-+... .++.++..+.
T Consensus 159 in~v~-~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g~~~~~~~~~~~~~~e~~~~ 214 (329)
T PRK13361 159 LNAVI-LRGQNDDEVLDLVEFCRERGLD-IAFIEEMPLGEIDERRRARHCSSDEVRAI 214 (329)
T ss_pred EEEEE-ECCCCHHHHHHHHHHHHhcCCe-EEEEecccCCCccchhhccCcCHHHHHHH
Confidence 55543 5899999999999999999986 457778888654422222 4665544443
No 88
>PRK05927 hypothetical protein; Provisional
Probab=99.48 E-value=5.5e-13 Score=143.17 Aligned_cols=190 Identities=16% Similarity=0.149 Sum_probs=140.7
Q ss_pred EEEeCCCCCCCCCCCccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 006836 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (629)
Q Consensus 195 ~V~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~ 272 (629)
.|.++.-|+.+|.||......+. ....++|+|++.++...+.|+++|.|+|..-..++. ..+.++++.|++.++
T Consensus 48 ~i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~---e~~~~~i~~ik~~~p- 123 (350)
T PRK05927 48 NPNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGI---DYLEELVRITVKEFP- 123 (350)
T ss_pred CCccchhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 35678999999999998653332 226789999999999999999999998765443322 246778888877654
Q ss_pred CCCceEEEeecCCcchh-------HHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCC
Q 006836 273 DGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVP 344 (629)
Q Consensus 273 ~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~p 344 (629)
+ +.+....|..+. ...++..+.++.+++-...+.++|+.++.+.+.+..+ ++.+++.+.++.+++.
T Consensus 124 -~---l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~l-- 197 (350)
T PRK05927 124 -S---LHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRL-- 197 (350)
T ss_pred -C---CcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHc--
Confidence 1 211111122111 0112233344556653344459999999999988774 5789999999999999
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC----CCCccccC
Q 006836 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARM 395 (629)
Q Consensus 345 gi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~----PGTpa~~~ 395 (629)
|+.+.+.+|+|+ |||.+|..+.+..+++++-+..+|..|.|. +|||+...
T Consensus 198 Gi~~~sg~l~G~-gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~ 251 (350)
T PRK05927 198 GFRSTATMMFGH-VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRR 251 (350)
T ss_pred CCCcCceeEEee-CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccC
Confidence 999999999999 999999999999999999777778888887 78998753
No 89
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.46 E-value=9e-12 Score=133.16 Aligned_cols=183 Identities=17% Similarity=0.277 Sum_probs=141.1
Q ss_pred EEEEEeCCCCCCCCCCCccCcc----CCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 006836 193 VEILPINVGCLGACTYCKTKHA----RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~----rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~ 268 (629)
+..|.++.+|+++|.||..... ..+....+.+++.+.++.+.+.|++.|.|+|.+-+.+ .++.++++.+.+
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~-----~~l~~li~~i~~ 85 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLR-----KDLVELVARLAA 85 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcccccc-----CCHHHHHHHHHh
Confidence 4568899999999999987541 1134568899999999999999999999998765543 357888888765
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCCE
Q 006836 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQ 347 (629)
Q Consensus 269 ~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~pgi~ 347 (629)
.+ +...+.+. +|...+.+.+ ..+ ...+ ..++.|+++|.+++..+.+.+ +.+.+++.+.++.++++ |+.
T Consensus 86 -~~--gi~~v~it-TNG~ll~~~~---~~L-~~~g-l~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~--G~~ 154 (334)
T TIGR02666 86 -LP--GIEDIALT-TNGLLLARHA---KDL-KEAG-LKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAA--GLE 154 (334)
T ss_pred -cC--CCCeEEEE-eCchhHHHHH---HHH-HHcC-CCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHc--CCC
Confidence 32 34356664 5665444432 233 3333 578999999999999999985 57999999999999999 876
Q ss_pred -EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccc
Q 006836 348 -IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (629)
Q Consensus 348 -i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~ 393 (629)
+...+++ .+|.+++++.+.++++++++++ +.+..|+|..++..+
T Consensus 155 ~v~in~vv-~~g~n~~ei~~l~~~~~~~gv~-~~~ie~mp~~~~~~~ 199 (334)
T TIGR02666 155 PVKLNTVV-MRGVNDDEIVDLAEFAKERGVT-LRFIELMPLGEGNGW 199 (334)
T ss_pred cEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEeccCCCCCccc
Confidence 6666544 4889999999999999999985 788889999887544
No 90
>PTZ00413 lipoate synthase; Provisional
Probab=99.44 E-value=1.1e-11 Score=131.98 Aligned_cols=182 Identities=18% Similarity=0.261 Sum_probs=136.5
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhC
Q 006836 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAEL 270 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~L~~~i 270 (629)
...|+..+..|+.+|.||++.... +....+++++++.++...+.|++.+++++.+-... .|.+ ..+.+.+++|.+..
T Consensus 149 tATfmilG~~CTr~C~FCaqstg~-~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL-~D~ga~~~a~~I~~Ir~~~ 226 (398)
T PTZ00413 149 TATIMVMGDHCTRGCRFCSVKTSR-KPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDL-PDGGASHVARCVELIKESN 226 (398)
T ss_pred eeEeeecCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCC-ChhhHHHHHHHHHHHHccC
Confidence 344666788999999999997533 24556899999999999999999998887642111 1111 35667777776532
Q ss_pred CCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHh-CCCCEE
Q 006836 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIEL-VPGMQI 348 (629)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R-~~t~e~~~e~I~~lr~~-~pgi~i 348 (629)
+ .+.+..+-|+...+ .+.+..+. .++ ...++-.+|| +++.+..++. +++.++.+++|+.+++. .||+.+
T Consensus 227 p-----~~~IevligDf~g~-~e~l~~L~-eAG-~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~t 297 (398)
T PTZ00413 227 P-----ELLLEALVGDFHGD-LKSVEKLA-NSP-LSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLT 297 (398)
T ss_pred C-----CCeEEEcCCccccC-HHHHHHHH-hcC-CCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceE
Confidence 2 34444445543211 12233333 444 6789999999 8999999995 68999999999999998 478999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEece
Q 006836 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (629)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ys 385 (629)
.+.+|+| +|||++|+.++++.+.+++++.+.|.+|-
T Consensus 298 cSGiIVG-LGET~eEvie~m~dLrelGVDivtIGQYL 333 (398)
T PTZ00413 298 KSSIMLG-LGETEEEVRQTLRDLRTAGVSAVTLGQYL 333 (398)
T ss_pred eeeeEec-CCCCHHHHHHHHHHHHHcCCcEEeecccc
Confidence 9999999 59999999999999999999999997774
No 91
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.44 E-value=1.5e-11 Score=129.45 Aligned_cols=178 Identities=13% Similarity=0.204 Sum_probs=136.3
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCC-cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 193 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~-~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
...|.++.+|+.+|.||..+..... .+.++.+++.+.++.+...|++.|.|+|.+.+.. .++.++++.+.+ .
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~iv~~l~~-~- 83 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLR-----KDLIEIIRRIKD-Y- 83 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccc-----cCHHHHHHHHHh-C-
Confidence 4578999999999999987543222 3568899999888888888999999998765443 357888888764 2
Q ss_pred CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-EEE
Q 006836 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IAT 350 (629)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~-i~t 350 (629)
+...+.+. +|...+.+. +..+. ..+ +.++.++++|.+++..+.++++.+.+++.+.++.++++ |+. +..
T Consensus 84 --g~~~v~i~-TNG~ll~~~---~~~l~-~~g-~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~--G~~~v~i 153 (302)
T TIGR02668 84 --GIKDVSMT-TNGILLEKL---AKKLK-EAG-LDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDA--GLTPVKL 153 (302)
T ss_pred --CCceEEEE-cCchHHHHH---HHHHH-HCC-CCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHc--CCCcEEE
Confidence 33355554 555433332 22333 333 57899999999999999999988999999999999999 875 655
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCC
Q 006836 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (629)
Q Consensus 351 d~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PG 389 (629)
.+++ +||++.+++.+.++++.+++++ +++..|+|...
T Consensus 154 ~~v~-~~g~n~~ei~~~~~~~~~~g~~-~~~ie~~p~~~ 190 (302)
T TIGR02668 154 NMVV-LKGINDNEIPDMVEFAAEGGAI-LQLIELMPPGE 190 (302)
T ss_pred EEEE-eCCCCHHHHHHHHHHHHhcCCE-EEEEEEeECCC
Confidence 5544 6999999999999999999985 78888888653
No 92
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.42 E-value=1.6e-11 Score=130.78 Aligned_cols=190 Identities=16% Similarity=0.228 Sum_probs=142.3
Q ss_pred CCceEEEEEeCCCCCCCCCCCccCccCCC--cCCCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 006836 189 RNKFVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (629)
Q Consensus 189 ~~~~~a~V~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~Ei~~l~~~-GvkeI~L~g~d~~~yg~d~~~~l~eLL~~ 265 (629)
+.+..+.+.+++||+.+|.||..+...|. ....+.+++.+-++.+.+. |+++|.|+|+|-+.... ..|.++++.
T Consensus 85 kyp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~---~~L~~ll~~ 161 (321)
T TIGR03822 85 RYPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSP---RRLGDIMAR 161 (321)
T ss_pred CCCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCH---HHHHHHHHH
Confidence 44567788999999999999987765443 2345667777777777754 89999999988765532 357888888
Q ss_pred HHHhCCCCCCceEEEee----cCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHH
Q 006836 266 IVAELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341 (629)
Q Consensus 266 L~~~i~~~~~~~iri~~----~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~ 341 (629)
+.+ ++ ....+|+++ .+|..+++.+ .+.++..+ + .+.+++++.+++-+ .++..++++.+++
T Consensus 162 l~~-i~--~v~~iri~Tr~~v~~p~rit~el---l~~L~~~g-~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~ 225 (321)
T TIGR03822 162 LAA-ID--HVKIVRFHTRVPVADPARVTPAL---IAALKTSG-K-TVYVALHANHAREL--------TAEARAACARLID 225 (321)
T ss_pred HHh-CC--CccEEEEeCCCcccChhhcCHHH---HHHHHHcC-C-cEEEEecCCChhhc--------CHHHHHHHHHHHH
Confidence 876 44 456778875 2566566543 44444443 2 47799999876543 3789999999999
Q ss_pred hCCCCEEEE-EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHH
Q 006836 342 LVPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (629)
Q Consensus 342 ~~pgi~i~t-d~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~ 402 (629)
+ |+.+.. .+++...+++.+++.++++++.++++...+++.+.|.+||..+ .++.+.
T Consensus 226 ~--Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f---~~~~~~ 282 (321)
T TIGR03822 226 A--GIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHF---RVTIEE 282 (321)
T ss_pred c--CCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccc---cCcHHH
Confidence 9 998866 4455557999999999999999999999999999999998655 355543
No 93
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.42 E-value=5.8e-12 Score=148.18 Aligned_cols=188 Identities=15% Similarity=0.299 Sum_probs=138.9
Q ss_pred EEEEeCCCCCCCCCCCccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
..|..|.+|+.+|.||++....+ ....+++|+|+++++...+.|+++|.+++..-..+. ...+.++++.|++..+
T Consensus 528 ~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~---~~~y~~lir~IK~~~p 604 (843)
T PRK09234 528 RNINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWVAGATEVCMQGGIHPELP---GTGYADLVRAVKARVP 604 (843)
T ss_pred eceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcC---HHHHHHHHHHHHHhCC
Confidence 34667999999999999875432 344579999999999999999999999975322221 1346778888887654
Q ss_pred CCCCceEEEeecCCcchh-------HHHHHHHHHHhCCCcccccc-cccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHh
Q 006836 272 PDGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 272 ~~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~~~~~l~-IGlESgsd~vLk~M~R-~~t~e~~~e~I~~lr~~ 342 (629)
+ +.+....|.++. -..++....++.+++ ..++ -+-|-.++++.+.+.+ +.+.+++.++++.+++.
T Consensus 605 --~---i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGL-ds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~l 678 (843)
T PRK09234 605 --S---MHVHAFSPMEIVNGAARLGLSIREWLTALREAGL-DTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEV 678 (843)
T ss_pred --C---eeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCc-CccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHc
Confidence 2 333222232221 011233344455553 4444 4666677777767765 46889999999999999
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEecee----CCCCccc
Q 006836 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP----RPGTPAA 393 (629)
Q Consensus 343 ~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP----~PGTpa~ 393 (629)
|+.+.+.+|+|+ +||.+|+.+.+.++++++.+..+|..|.| .|+||++
T Consensus 679 --Gi~~~stmm~G~-~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~ 730 (843)
T PRK09234 679 --GLRSSSTMMYGH-VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLY 730 (843)
T ss_pred --CCCcccceEEcC-CCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcc
Confidence 999999999997 79999999999999999999999999999 7889875
No 94
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.38 E-value=9.3e-11 Score=127.28 Aligned_cols=193 Identities=19% Similarity=0.261 Sum_probs=141.0
Q ss_pred EEEEEeCCCCCCCCCCCccCccC---CCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 006836 193 VEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~r---G~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~ 269 (629)
+..|.++.+|+.+|.||..+... .+....+.+++.+.++.+.+.|++.|.|+|.+-+.+ .++.++++.+.+
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr-----~dl~eli~~l~~- 132 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLR-----KDIEDICLQLSS- 132 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcch-----hhHHHHHHHHHh-
Confidence 45678999999999999754211 122457899999999988889999999998654332 357888888765
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-EE
Q 006836 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QI 348 (629)
Q Consensus 270 i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi-~i 348 (629)
++ +...+.+. +|...+.+.. .++.. .+ ...+.+.+++.+++..+.+.|+...+++.+.++.++++ |+ .+
T Consensus 133 ~~--gi~~i~it-TNG~lL~~~~---~~L~~-aG-ld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~--G~~~v 202 (373)
T PLN02951 133 LK--GLKTLAMT-TNGITLSRKL---PRLKE-AG-LTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIEL--GYNPV 202 (373)
T ss_pred cC--CCceEEEe-eCcchHHHHH---HHHHh-CC-CCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCcE
Confidence 33 44445553 5554444433 33333 33 57899999999999999998888889999999999998 75 34
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHHH
Q 006836 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403 (629)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~~ 403 (629)
...+ +-++|++++++.+.++++++.++ .+.+..|+|..|++...-..++..+.
T Consensus 203 kin~-vv~~g~N~~Ei~~li~~a~~~gi-~vr~ie~mP~~~~~~~~~~~~~~~ei 255 (373)
T PLN02951 203 KVNC-VVMRGFNDDEICDFVELTRDKPI-NVRFIEFMPFDGNVWNVKKLVPYAEM 255 (373)
T ss_pred EEEE-EecCCCCHHHHHHHHHHHHhCCC-eEEEEEcccCCCCccccccCCCHHHH
Confidence 4443 34578899999999999999985 58889999999996433223554433
No 95
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.35 E-value=2.5e-11 Score=142.87 Aligned_cols=195 Identities=17% Similarity=0.222 Sum_probs=139.8
Q ss_pred EEEEeCCCCCCCCCCCccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC------------CCc-CCC
Q 006836 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG------------RDI-GVN 258 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg------------~d~-~~~ 258 (629)
.+|..+..|..+|.||.+....+ ....+++|+|++.++...+.|++++.|++.+-.... .+. ...
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey 152 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDY 152 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHH
Confidence 46778999999999999865444 345679999999999999999999999876543311 100 023
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh------cCCCCHHHH
Q 006836 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM------NREYTLSDF 332 (629)
Q Consensus 259 l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M------~R~~t~e~~ 332 (629)
+.++++.+.++.+ -...+.++. ++. .++..+.+. + . .+++.+|+.+++..+.. ..+...++.
T Consensus 153 ~~~~~~~ik~~~g--l~p~i~~G~-----ls~--~E~~~Lk~~-g-~-s~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~R 220 (843)
T PRK09234 153 VRAMAIRVLEETG--LLPHLNPGV-----MSW--SELARLKPV-A-P-SMGMMLETTSRRLFEEKGGPHYGSPDKDPAVR 220 (843)
T ss_pred HHHHHHHHHHhcC--CCceeeeCC-----CCH--HHHHHHHHh-c-C-cCCCCHHHHHHHHHHhhcccccCCCCCCHHHH
Confidence 4455555554332 122344443 222 223333322 2 2 24677888887775432 233467788
Q ss_pred HHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCeEEEEeceeCCCCccccCCCCCHHHH
Q 006836 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGTPAARMKKVPSAVV 403 (629)
Q Consensus 333 ~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l-----~~d~v~i~~ysP~PGTpa~~~~~v~~~~~ 403 (629)
++.++.+++. |+.+.+.+|+|+ |||.+|..+.+..++++ +|..+-+..|.|.||||+...+..+.++.
T Consensus 221 L~ti~~A~~l--Gi~~tsG~L~Gi-GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~ 293 (843)
T PRK09234 221 LRVLEDAGRL--SVPFTTGILIGI-GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEEL 293 (843)
T ss_pred HHHHHHHHHc--CCCccceEEEEC-CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHH
Confidence 9999999999 999999999999 99999999999999999 68889999999999999987776665543
No 96
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.32 E-value=2.5e-10 Score=122.67 Aligned_cols=183 Identities=20% Similarity=0.301 Sum_probs=130.2
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~ 269 (629)
.....|.++.||+.+|.||.... .|..|..++++|++++..+.. .++++|+|+|. |.+. .++.++++.+...
T Consensus 102 ~~t~cvSsq~GC~~~C~FC~tg~-~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~-----GEPl-~n~~~vi~~l~~l 174 (349)
T PRK14463 102 RNTLCISSQVGCAMGCAFCLTGT-FRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGM-----GEPL-ANLDNVIPALQIL 174 (349)
T ss_pred CcEEEEEecCCcCCCCccCCCCC-CCCCCCCCHHHHHHHHHHHHhcCCccEEEEecC-----Ccch-hcHHHHHHHHHHh
Confidence 45679999999999999998654 455788999999999988765 47899999972 4433 2455666555432
Q ss_pred CCCCC----CceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh---cCCCCHHHHHHHHHHHHHh
Q 006836 270 LPPDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 270 i~~~~----~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M---~R~~t~e~~~e~I~~lr~~ 342 (629)
....+ ...++++ ++. +.+. +.++.... -..+.+.+.|.+++..+.+ +|+++.+++.++++.....
T Consensus 175 ~~~~gl~~s~r~itVs-TnG--l~~~---i~~l~~~~--~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~ 246 (349)
T PRK14463 175 TDPDGLQFSTRKVTVS-TSG--LVPE---MEELGREV--TVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLP 246 (349)
T ss_pred hcccccCcCCceEEEE-CCC--chHH---HHHHhhcc--CeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHh
Confidence 11001 2355554 222 2333 33333322 2356789999999999886 8889999999988877765
Q ss_pred CCCCEEEE-EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCC
Q 006836 343 VPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (629)
Q Consensus 343 ~pgi~i~t-d~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGT 390 (629)
. +-.+.. +++++-.+++++++.+..++++.++. .+++-+|.|.+|.
T Consensus 247 ~-~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~-~vnlIPyn~~~~~ 293 (349)
T PRK14463 247 G-RRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPS-KVNLIPFNEHEGC 293 (349)
T ss_pred c-CCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCc-eEEEEecCCCCCC
Confidence 2 234443 56666679999999999999999975 7999999998874
No 97
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.28 E-value=2.7e-10 Score=115.56 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=120.6
Q ss_pred EEEEeCCCCCCCCCCCccCccCC--CcCCCCHHHHHHHHHHHHHCC---CcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 006836 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~Ei~~l~~~G---vkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~ 268 (629)
.++-++.|||++|.||..+.... ..+.++++++++++..+...+ ...|.|+|++.+.+. + .+.++++.+.+
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~-~---~~~~li~~~~~ 92 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQP-E---FLSELFKACKE 92 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCH-H---HHHHHHHHHHH
Confidence 34567889999999998764321 235678999999999876532 257899886655431 1 13467776654
Q ss_pred hCCCCCCceEEEeecCCcc--hhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 006836 269 ELPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (629)
Q Consensus 269 ~i~~~~~~~iri~~~~p~~--i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi 346 (629)
. +. .+.+. ++... +.+.+ .+++.. ...+.+++++.+++..+.+.+. +.+.+.+.++.+++. |+
T Consensus 93 -~---g~-~~~i~-TNG~~~~~~~~~---~~ll~~---~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~--g~ 157 (235)
T TIGR02493 93 -L---GI-HTCLD-TSGFLGGCTEAA---DELLEY---TDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKR--NK 157 (235)
T ss_pred -C---CC-CEEEE-cCCCCCccHHHH---HHHHHh---CCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhC--CC
Confidence 2 32 34443 34321 13333 333332 3568899999999999887655 788999999999998 87
Q ss_pred EEEEEEEEcCCC--CCHHHHHHHHHHHHhcC-CCeEEEEeceeC
Q 006836 347 QIATDIICGFPG--ETDEDFNQTVNLIKEYK-FPQVHISQFYPR 387 (629)
Q Consensus 347 ~i~td~IvGfPG--ETeedf~eTl~fl~~l~-~d~v~i~~ysP~ 387 (629)
.+...+++ +|| ++.+++++.++|+.+++ ...+++.+|.|.
T Consensus 158 ~~~v~~vv-~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~ 200 (235)
T TIGR02493 158 PIWIRYVL-VPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQL 200 (235)
T ss_pred cEEEEEee-eCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcc
Confidence 77666555 375 67899999999999998 577777777764
No 98
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.27 E-value=6.3e-10 Score=119.93 Aligned_cols=187 Identities=19% Similarity=0.275 Sum_probs=129.4
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH------CCCcEEEEeecCCCCCCCCcC--CCHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIG--VNLPIL 262 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~------~GvkeI~L~g~d~~~yg~d~~--~~l~eL 262 (629)
.....|.++.||+.+|.||..+.. |..|..++++|++++..... .|+..|+|+| +|.... ..+.++
T Consensus 108 ~~t~ciSsqvGC~~~C~FC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~G-----mGEPLln~~~v~~~ 181 (356)
T PRK14455 108 GNSVCVTTQVGCRIGCTFCASTLG-GLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMG-----IGEPFDNYDNVMDF 181 (356)
T ss_pred CceEEEECCCCCCCCCCcCCCCCC-CCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEec-----cccccCCHHHHHHH
Confidence 456799999999999999998864 56788999999999986422 3678899987 233321 235556
Q ss_pred HHHHHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHh---hcCCCCHHHHHHHHHH
Q 006836 263 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA---MNREYTLSDFRTVVDT 338 (629)
Q Consensus 263 L~~L~~~i~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~---M~R~~t~e~~~e~I~~ 338 (629)
++.+.+.... .+...+.+++. - +.+. +..+.... +-..+.+.+.+.+++..+. ++|+++.+++.+.++.
T Consensus 182 l~~l~~~~g~~~s~r~itvsT~-G--~~~~---i~~l~d~~-l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~ 254 (356)
T PRK14455 182 LRIINDDKGLAIGARHITVSTS-G--IAPK---IYDFADEG-LQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEY 254 (356)
T ss_pred HHHHhcccCcccCCCceEEEec-C--chHh---HHHHHhcc-cCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 6665432100 01224555422 1 1222 33333322 1234679999999999875 6788999999999998
Q ss_pred HHHhCCCCEEEE-EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 339 LIELVPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 339 lr~~~pgi~i~t-d~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
+.+. .+..+.. +++++-.+++++++++..+|++.++ ..+++-+|.|.++.+.
T Consensus 255 ~~~~-~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~-~~VnLIPynp~~~~ky 307 (356)
T PRK14455 255 YIEK-TNRRVTFEYILLGGVNDQVEHAEELADLLKGIK-CHVNLIPVNPVPERDY 307 (356)
T ss_pred HHHh-cCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-CcEEEEecCcCCCCCC
Confidence 8764 1444444 5666667999999999999999997 5789999999988753
No 99
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.25 E-value=1.6e-09 Score=115.73 Aligned_cols=192 Identities=16% Similarity=0.289 Sum_probs=135.0
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~ 269 (629)
....+|.++.||+.+|.||..... |..|..++++|++++..+.. .++..|+|+| .|... .++.++++.+...
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~-g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmG-----mGEPL-~N~d~vi~al~~l 174 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQ-GFTGNLTAAQILNQIYSLPERDKLTNLVFMG-----MGEPL-DNLDEVLKALEIL 174 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHhhhhcCCCCeEEEee-----eCcCc-ccHHHHHHHHHHH
Confidence 456789999999999999998764 66677999999999998754 3689999988 24443 3556666666542
Q ss_pred CCCCC----CceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHh
Q 006836 270 LPPDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 270 i~~~~----~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~---R~~t~e~~~e~I~~lr~~ 342 (629)
....+ ...+.+++.- +...+..+ +.... ..+.+.+-|.+++..+.+. +.|+.+++.++++...+.
T Consensus 175 ~~~~g~~~s~r~ItVsT~G---~~~~i~~l---~~~~~--~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~ 246 (345)
T PRK14466 175 TAPYGYGWSPKRITVSTVG---LKKGLKRF---LEESE--CHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFS 246 (345)
T ss_pred hhccccCcCCceEEEEcCC---CchHHHHH---hhccC--cEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHh
Confidence 11001 2356665322 22222222 22222 3567889999999987765 458899999999987665
Q ss_pred CCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHH
Q 006836 343 VPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (629)
Q Consensus 343 ~pg-i~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~ 402 (629)
..+ +.+..-+|=|+ .+++++..+..++++.++ ..+++-+|.|.||.+ +...+++.
T Consensus 247 ~~rri~~Ey~Li~gv-ND~~e~a~~L~~ll~~~~-~~VNLIp~Np~~~~~---~~~~s~~~ 302 (345)
T PRK14466 247 KQRRVSFEYIVFKGL-NDSLKHAKELVKLLRGID-CRVNLIRFHAIPGVD---LEGSDMAR 302 (345)
T ss_pred hCCEEEEEEEEeCCC-CCCHHHHHHHHHHHcCCC-ceEEEEecCCCCCCC---CcCCCHHH
Confidence 333 55655566665 899999999999999987 789999999999963 33445543
No 100
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.21 E-value=3.9e-09 Score=114.78 Aligned_cols=178 Identities=12% Similarity=0.148 Sum_probs=134.8
Q ss_pred CceEEEEEeCCCCCCCCCCCccCccC-CCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 006836 190 NKFVEILPINVGCLGACTYCKTKHAR-GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (629)
Q Consensus 190 ~~~~a~V~isrGCp~~CsFC~ip~~r-G~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~ 268 (629)
.+....++++..|+.+|.||...... ...+..+.+++.+-++.+.+.|+..|.|+|.+.+.+ .++.++++.+.+
T Consensus 14 ~P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~il~~~~~ 88 (378)
T PRK05301 14 PPLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLR-----KDLEELVAHARE 88 (378)
T ss_pred CCeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCc-----hhHHHHHHHHHH
Confidence 46778899999999999999865322 234567899988888888888999999998766553 357788888765
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCCCE
Q 006836 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQ 347 (629)
Q Consensus 269 ~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~pgi~ 347 (629)
. + ..+.+ .+|...+++.. +..+.. .+ ...+.|++++.++++.+.+++. .+.+.+.+.++.+++. |+.
T Consensus 89 ~----g-~~~~i-~TNG~ll~~~~--~~~L~~-~g-~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~--g~~ 156 (378)
T PRK05301 89 L----G-LYTNL-ITSGVGLTEAR--LAALKD-AG-LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAH--GYP 156 (378)
T ss_pred c----C-CcEEE-ECCCccCCHHH--HHHHHH-cC-CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHC--CCc
Confidence 2 2 23334 36766666543 333333 23 5689999999999999888665 4899999999999998 887
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEecee
Q 006836 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (629)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP 386 (629)
+...++ ++.++.+++.+.++++.+++++.+.+..+.+
T Consensus 157 v~i~~v--v~~~N~~~i~~~~~~~~~lgv~~i~~~~~~~ 193 (378)
T PRK05301 157 LTLNAV--IHRHNIDQIPRIIELAVELGADRLELANTQY 193 (378)
T ss_pred eEEEEE--eecCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 655544 4788999999999999999999888766544
No 101
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.19 E-value=2e-09 Score=116.28 Aligned_cols=187 Identities=14% Similarity=0.245 Sum_probs=129.4
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHH--------HHCCCcEEEEeecCCCCCCCCcC--CCHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV--------IADGVKEVWLSSEDTGAYGRDIG--VNLP 260 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l--------~~~GvkeI~L~g~d~~~yg~d~~--~~l~ 260 (629)
...+.|.++.||+.+|+||..... |..|..+.++|++++..+ ...+++.|+|+| +|..+. .++.
T Consensus 120 ~~t~ciSsq~GCnl~C~FC~tg~~-g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmG-----mGEPLln~d~v~ 193 (368)
T PRK14456 120 RMTACISSQAGCALRCSFCATGQM-GFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMG-----MGEPLLNTDNVF 193 (368)
T ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeC-----cCccccCHHHHH
Confidence 466789999999999999997753 666778999999997543 235789999998 244432 2356
Q ss_pred HHHHHHHHh-CCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh----cCCCCHHHHHH
Q 006836 261 ILLNAIVAE-LPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM----NREYTLSDFRT 334 (629)
Q Consensus 261 eLL~~L~~~-i~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M----~R~~t~e~~~e 334 (629)
++++.+.+. ... .+..++.++ ++- +.+. +.++... ++-..|.+++.|.+++..+.+ +++|..+++.+
T Consensus 194 ~~i~~l~~~~~~~~is~r~Itis-T~G--l~~~---i~~L~~~-gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~ 266 (368)
T PRK14456 194 EAVLTLSTRKYRFSISQRKITIS-TVG--ITPE---IDRLATS-GLKTKLAVSLHSADQEKRERLMPQAARDYPLDELRE 266 (368)
T ss_pred HHHHHHhccccccCcCcCeeEEE-CCC--ChHH---HHHHHHc-CCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHH
Confidence 666666442 100 012355554 222 3333 3334333 322479999999999999766 35899999999
Q ss_pred HHHH-HHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 335 VVDT-LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 335 ~I~~-lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
+++. +++.-..+.+..-+|-|+ .++++++.+.++|++.+. ..+++-+|.|.++.+.
T Consensus 267 ~i~~~~~~~g~~V~ieyvLI~Gv-NDs~eda~~L~~~l~~~~-~~VnlIpyn~~~~~~~ 323 (368)
T PRK14456 267 ALIGYASKTGEPVTLVYMLLEGI-NDSPEDARKLIRFASRFF-CKINLIDYNSIVNIKF 323 (368)
T ss_pred HHHHHHHhcCCeEEEEEEEEcCC-CCCHHHHHHHHHHHhcCC-CeeEEeeeccCCCCCC
Confidence 9985 444411244555566665 799999999999999985 4789999999988874
No 102
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.17 E-value=6.3e-09 Score=112.24 Aligned_cols=176 Identities=12% Similarity=0.162 Sum_probs=130.9
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCC-CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG-~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~ 269 (629)
+....++++..|+.+|.||..+.... +....+.+++.+-++.+.+.|+..|.|+|.+-+.+ .++.++++.+.+.
T Consensus 6 P~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~ii~~~~~~ 80 (358)
T TIGR02109 6 PLWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLAR-----PDLVELVAHARRL 80 (358)
T ss_pred CcEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccccc-----ccHHHHHHHHHHc
Confidence 45678999999999999998653222 23457888888888888888999999998766543 3578888887652
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCCCEE
Q 006836 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQI 348 (629)
Q Consensus 270 i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~pgi~i 348 (629)
+ ..+.+ .+|...+++.. +..+.. .+ +..+.|++++.++++..++++. .+.+.+.+.++.++++ |+.+
T Consensus 81 ----g-~~~~l-~TNG~ll~~e~--~~~L~~-~g-~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~--g~~v 148 (358)
T TIGR02109 81 ----G-LYTNL-ITSGVGLTEAR--LDALAD-AG-LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAA--GLPL 148 (358)
T ss_pred ----C-CeEEE-EeCCccCCHHH--HHHHHh-CC-CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhC--CCce
Confidence 2 23444 35665565543 333333 33 5789999999999999888653 4788999999999998 8876
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEece
Q 006836 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (629)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ys 385 (629)
...++ ++.++.+++.+.++++.+++++.+.+....
T Consensus 149 ~v~~v--v~~~N~~~l~~~~~~~~~lg~~~i~~~~~~ 183 (358)
T TIGR02109 149 TLNFV--IHRHNIDQIPEIIELAIELGADRVELATTQ 183 (358)
T ss_pred EEEEE--eccCCHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 55444 468899999999999999999988876543
No 103
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.15 E-value=3e-09 Score=107.88 Aligned_cols=181 Identities=19% Similarity=0.277 Sum_probs=135.0
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHh
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAE 269 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~L~~~ 269 (629)
....|+..+.=|..+|.||.+.. |+....++++-.+-++...+.|.+.+++++.|-.... |-+ ..|.+.+++|.+.
T Consensus 69 ~tATFmImG~~CTR~C~FC~V~~--g~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~-DGGA~hfa~~i~~Ire~ 145 (306)
T COG0320 69 GTATFMILGDICTRRCRFCDVKT--GRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLP-DGGAQHFAECIRAIREL 145 (306)
T ss_pred CceEEeeccchhccCCCccccCC--CCCCCCCCchHHHHHHHHHHhCCCeEEEEeecccccc-ccchHHHHHHHHHHHhh
Confidence 34446667888999999999876 5566667777777777777789999999986432211 111 4689999999875
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhC-CCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006836 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (629)
Q Consensus 270 i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~-~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (629)
.| ...+..+-|++-.. ...+..++.. +.++ .-.+|+. ++....++++.+.+.-+++++++++..|.+..
T Consensus 146 ~P-----~t~iEvL~PDF~G~-~~al~~v~~~~pdV~---nHNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~T 215 (306)
T COG0320 146 NP-----QTTIEVLTPDFRGN-DDALEIVADAGPDVF---NHNVETV-PRLYPRVRPGATYERSLSLLERAKELGPDIPT 215 (306)
T ss_pred CC-----CceEEEeCccccCC-HHHHHHHHhcCcchh---hcccccc-hhcccccCCCCcHHHHHHHHHHHHHhCCCccc
Confidence 43 44555567765432 2223333332 3333 3356665 35567788899999999999999999999999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEece
Q 006836 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (629)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ys 385 (629)
.+.+|+|+ |||.+++.++++-+++.+.|.+.+.+|.
T Consensus 216 KSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYl 251 (306)
T COG0320 216 KSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYL 251 (306)
T ss_pred ccceeeec-CCcHHHHHHHHHHHHHcCCCEEEecccc
Confidence 99999999 9999999999999999999999999985
No 104
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.14 E-value=1.9e-09 Score=116.34 Aligned_cols=192 Identities=19% Similarity=0.288 Sum_probs=136.1
Q ss_pred EEEEeCCCCCCCCCCCccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
.+|..+.=|.++|+||.+....+ .-..+++|+|.++++.+.+.|++|+.|++.....++.+ -+.++++.|.+.++
T Consensus 61 ~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~---y~~~~~~~ik~~~p 137 (370)
T COG1060 61 RNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE---YYEELFRTIKEEFP 137 (370)
T ss_pred ecCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH---HHHHHHHHHHHhCc
Confidence 45677888999999999876543 23468999999999999999999999998765555433 35778888877554
Q ss_pred CCCCceEEEeecCCcchhH-------HHHHHHHHHhCCCcccccccccCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHhC
Q 006836 272 PDGSTMLRIGMTNPPFILE-------HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELV 343 (629)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~-------~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~-R~~t~e~~~e~I~~lr~~~ 343 (629)
......+ .|..+.. ..+|..+.++.+++-...--|-|=.++++.+.+. .+.+.+.++++++.+++.
T Consensus 138 --~~~i~a~---s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~l- 211 (370)
T COG1060 138 --DLHIHAL---SAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRL- 211 (370)
T ss_pred --chhhccc---CHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHc-
Confidence 2222222 2221110 1123223334555433444445555777766664 347999999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCeEEEEeceeCCCC-ccccCC
Q 006836 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGT-PAARMK 396 (629)
Q Consensus 344 pgi~i~td~IvGfPGETeedf~eTl~fl~~l-----~~d~v~i~~ysP~PGT-pa~~~~ 396 (629)
||...+.+++|+ +||.+|..+++..++++ +|..+.+-.|.|.+++ ++...+
T Consensus 212 -GI~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~ 268 (370)
T COG1060 212 -GIPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVP 268 (370)
T ss_pred -CCCccceeEEEe-cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCC
Confidence 999999999998 99999999999999988 4566666677777777 444444
No 105
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.14 E-value=1e-08 Score=110.04 Aligned_cols=190 Identities=17% Similarity=0.284 Sum_probs=128.3
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~---~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~ 267 (629)
....+|.++-||+.+|.||..+.. |..|..++++|++++..+.+ .++..|+|+| +|..+ .++..+++.+.
T Consensus 100 r~t~cvSsqvGC~~~C~FC~tg~~-g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmG-----mGEPl-ln~~~v~~~i~ 172 (345)
T PRK14457 100 RLTVCVSSQVGCPMACDFCATGKG-GLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMG-----MGEPL-LNIDEVLAAIR 172 (345)
T ss_pred CCEEEEeCCCCCCCcCCcCCCCCC-CCccccCHHHHHHHHHHHHHHhcCCCCEEEEEe-----cCccc-cCHHHHHHHHH
Confidence 456899999999999999987653 55677899999999987654 3578899997 24433 23334444443
Q ss_pred HhCCC--CCCceEEEeecCCcchhHHHHHHHHHH-h-CCCcccccccccCCCCHHHHHhh---cCCCCHHHHHHHHHH-H
Q 006836 268 AELPP--DGSTMLRIGMTNPPFILEHLKEIAEVL-R-HPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT-L 339 (629)
Q Consensus 268 ~~i~~--~~~~~iri~~~~p~~i~~~l~el~~l~-~-~~~~~~~l~IGlESgsd~vLk~M---~R~~t~e~~~e~I~~-l 339 (629)
..... .+...+.+++.- +.+.++++.+.. . -++.-..+.+.+-+.+++..+.+ +++|..+++.+.+.. +
T Consensus 173 ~l~~~~~i~~r~itvST~G---~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~ 249 (345)
T PRK14457 173 CLNQDLGIGQRRITVSTVG---VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYV 249 (345)
T ss_pred HHhcccCCccCceEEECCC---chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHH
Confidence 31110 122466676432 222233333211 0 00111257789999999999877 466888888877765 4
Q ss_pred HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 340 r~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
.+.-..+.+..-+|=|+ .++++++++..+|++.++. .+++-+|.|.++.+.
T Consensus 250 ~~~gr~I~iey~LIpGv-NDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~~~ 300 (345)
T PRK14457 250 AITGRRVSFEYILLGGV-NDLPEHAEELANLLRGFQS-HVNLIPYNPIDEVEF 300 (345)
T ss_pred HHhCCEEEEEEEEECCc-CCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCCCC
Confidence 44412367777777777 8999999999999999975 799999999888653
No 106
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.13 E-value=2.8e-09 Score=113.99 Aligned_cols=188 Identities=15% Similarity=0.208 Sum_probs=129.9
Q ss_pred CceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 006836 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (629)
Q Consensus 190 ~~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~ 268 (629)
.+..+.+.++.||+.+|+||..+...+.....+.+++.+.++.+.+ .|+++|.|+|+|...... ..+.++++.+.+
T Consensus 111 y~~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~~ 187 (331)
T TIGR00238 111 YVNRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLEE 187 (331)
T ss_pred cCCcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHHh
Confidence 3456789999999999999987654433233336777777777665 489999999988665432 237788888875
Q ss_pred hCCCCCCceEEEeecCC----cchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 006836 269 ELPPDGSTMLRIGMTNP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (629)
Q Consensus 269 ~i~~~~~~~iri~~~~p----~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p 344 (629)
++ ....+|+++..| ..+++. +.++++..+ ...+.++.-...+++ .++..++++.++++
T Consensus 188 -i~--~~~~IRi~tr~~~~~P~rit~e---l~~~L~~~~-~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~a-- 249 (331)
T TIGR00238 188 -IP--HLVRLRIGTRLPVVIPQRITDE---LCELLASFE-LQLMLVTHINHCNEI---------TEEFAEAMKKLRTV-- 249 (331)
T ss_pred -cC--CccEEEeecCCCccCchhcCHH---HHHHHHhcC-CcEEEEccCCChHhC---------CHHHHHHHHHHHHc--
Confidence 54 567889886443 345554 444554433 334444433333221 26788999999999
Q ss_pred CCEEE--EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHH
Q 006836 345 GMQIA--TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (629)
Q Consensus 345 gi~i~--td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~ 402 (629)
|+.+. +-++-|. .++.+++.+..+++.++++...+++.+.|..|+.-+ .+|.+.
T Consensus 250 Gi~v~~qtvLl~gv-nD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f---~~~~~~ 305 (331)
T TIGR00238 250 NVTLLNQSVLLRGV-NDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHF---LVPDAE 305 (331)
T ss_pred CCEEEeecceECCc-CCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccc---cCCHHH
Confidence 87544 4556665 788999999999999999988899999999998433 456543
No 107
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.12 E-value=9.8e-09 Score=110.25 Aligned_cols=190 Identities=18% Similarity=0.292 Sum_probs=124.7
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcC--CCHHHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIG--VNLPILLN 264 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~----~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~ 264 (629)
....+|.++.|||.+|.||..+. .|..|..+.++|++++..+.. .++..|+|.| +|.... ..+.++++
T Consensus 98 ~~t~cvSsq~GC~l~C~FC~t~~-~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmG-----mGEPL~N~d~v~~~l~ 171 (348)
T PRK14467 98 HLTLCVSSQVGCAVGCKFCATAK-DGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMG-----MGEPLANYENVRKAVQ 171 (348)
T ss_pred CcEEEEEcCCCCCCcCcCCCCCC-CCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEc-----cChhhcCHHHHHHHHH
Confidence 45689999999999999999874 366688999999999876654 3578899987 344321 12334444
Q ss_pred HHHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc---CCCCHHHHHHHHHHHH
Q 006836 265 AIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLI 340 (629)
Q Consensus 265 ~L~~~i~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~---R~~t~e~~~e~I~~lr 340 (629)
.+.+.... .+...+++++.- +...+.++....-.+. + .+.+.+-+.+++..+.+- +.++.+++.++++...
T Consensus 172 ~l~~~~gl~~~~r~itvsT~G---~~~~i~~l~~~~~l~~-v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~ 246 (348)
T PRK14467 172 IMTSPWGLDLSKRRITISTSG---IIHQIKRMAEDPVMPE-V-NLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYP 246 (348)
T ss_pred HHcChhccCcCCCcEEEECCC---ChhHHHHHHhhccccC-e-eEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 44321100 011356666332 1222222221000022 2 466899999999987664 4578888888887655
Q ss_pred H-hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEeceeCCCCcc
Q 006836 341 E-LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPA 392 (629)
Q Consensus 341 ~-~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~-~d~v~i~~ysP~PGTpa 392 (629)
. .-..+.+..-+|=|+ .++++++++..+|++.++ ..++++-+|.|+|+.+.
T Consensus 247 ~~~g~~V~ieyvLIpGv-NDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~ 299 (348)
T PRK14467 247 LPPGRRIMLEYVLIKGV-NDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPY 299 (348)
T ss_pred HhcCCeEEEEEEEECCc-cCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCC
Confidence 3 312355555566555 789999999999999985 56899999999988864
No 108
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.11 E-value=1.8e-08 Score=107.73 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=128.5
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcC--CCHHHHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~---GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~ 265 (629)
+....|.++.||+++|.||..... |-.|..++++|++++..+.+. .++.|+|+| +|.... ..+.++++.
T Consensus 96 ~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmG-----mGEPllN~d~v~~~i~~ 169 (336)
T PRK14470 96 HHVVCLSSQAGCALGCAFCATGKL-GLDRSLRSWEIVAQLLAVRADSERPITGVVFMG-----QGEPFLNYDEVLRAAYA 169 (336)
T ss_pred CCEEEEeCCCCcCCCCccccCCCC-CCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEe-----cCccccCHHHHHHHHHH
Confidence 457899999999999999998753 456778999999999876542 578999998 344431 123444444
Q ss_pred HHHhCC-CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh---cCCCCHHHHHHHHHHHHH
Q 006836 266 IVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE 341 (629)
Q Consensus 266 L~~~i~-~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M---~R~~t~e~~~e~I~~lr~ 341 (629)
+..... ..+..++.+++.-. .+. +.+++..+. -..|.+++.+.+++..+.+ +++++.+++.+.++.+.+
T Consensus 170 l~~~~~~~~~~~~ItVsTnG~---~p~---i~~l~~~~~-~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~ 242 (336)
T PRK14470 170 LCDPAGARIDGRRISISTAGV---VPM---IRRYTAEGH-KFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAA 242 (336)
T ss_pred HhCccccccCCCceEEEecCC---hHH---HHHHHhcCC-CceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHH
Confidence 432100 00234666653222 222 333343332 2469999999999999887 456899999999999998
Q ss_pred hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCC
Q 006836 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (629)
Q Consensus 342 ~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PG 389 (629)
.-..+.+..-+|-|+ .++++|+++..++++.+.. .++.-+|.|.+|
T Consensus 243 ~~rri~ieyvLI~Gv-NDseeda~~La~llk~l~~-~vnlI~~N~~~~ 288 (336)
T PRK14470 243 LRGRVTLEYVMISGV-NVGEEDAAALGRLLAGIPV-RLNPIAVNDATG 288 (336)
T ss_pred hCCCeEEEEEEEecc-cCCHHHHHHHHHHHhcCCC-eEEEeccCCCCC
Confidence 722356666667776 6899999999999998854 788888988655
No 109
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.10 E-value=1.9e-08 Score=111.45 Aligned_cols=205 Identities=20% Similarity=0.256 Sum_probs=138.3
Q ss_pred eEEEEEeCCCCCCCCCCCccCcc-----C-C-CcCCCCHHHHHHHHHHHHHC--CCcEEEEee-cCCCCCCCCcCCCHHH
Q 006836 192 FVEILPINVGCLGACTYCKTKHA-----R-G-HLGSYTVESLVGRVRTVIAD--GVKEVWLSS-EDTGAYGRDIGVNLPI 261 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~-----r-G-~~Rsr~~e~Iv~Ei~~l~~~--GvkeI~L~g-~d~~~yg~d~~~~l~e 261 (629)
.+..+.++.||+.+|.||...+. + | ..+..+++++++.++.+.+. +...|.|+| .+-+.+. ....+
T Consensus 24 ~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~----e~~~~ 99 (442)
T TIGR01290 24 ARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANI----GKTFQ 99 (442)
T ss_pred CEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCc----cccHH
Confidence 45678999999999999986432 1 2 23567899999999988764 567788887 3333321 22456
Q ss_pred HHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh-------cCCCC------
Q 006836 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-------NREYT------ 328 (629)
Q Consensus 262 LL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M-------~R~~t------ 328 (629)
+++.+.+.++ + ..+.++ ++-..+.+.++ +++.. + ..++.+.+-+.++++.+.+ +|.++
T Consensus 100 ~l~~~~~~~~--~-i~i~ls-TNG~~l~e~i~---~L~~~-g-vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~ 170 (442)
T TIGR01290 100 TLELVARQLP--D-VKLCLS-TNGLMLPEHVD---RLVDL-G-VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAAD 170 (442)
T ss_pred HHHHHHHhcC--C-CeEEEE-CCCCCCHHHHH---HHHHC-C-CCeEEEeccCCCHHHHhhcchhhccccccccCcchHH
Confidence 7777766543 2 345554 45433344433 33333 2 5789999999999999775 23343
Q ss_pred --HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCC--CCccc--cCCCCCHHH
Q 006836 329 --LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP--GTPAA--RMKKVPSAV 402 (629)
Q Consensus 329 --~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~P--GTpa~--~~~~v~~~~ 402 (629)
.+..++.++.+.+. |+.+...+++ +||.+++++.+.++++++++...+++.+|.|.| ||+.. .++..+.++
T Consensus 171 il~e~~l~~l~~l~~~--G~~v~v~~vl-IpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~ 247 (442)
T TIGR01290 171 LLIERQLEGLEKLTER--GILVKVNSVL-IPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDE 247 (442)
T ss_pred HHHHHHHHHHHHHHhC--CCeEEEEEEe-eCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHH
Confidence 34556888888888 8765554433 378889999999999999999889999999888 98853 223455555
Q ss_pred HHHHHHHHHH
Q 006836 403 VKKRSRELTS 412 (629)
Q Consensus 403 ~~~R~~~L~~ 412 (629)
..+-.+.+..
T Consensus 248 l~~~~~~~~~ 257 (442)
T TIGR01290 248 LAALRDRLEM 257 (442)
T ss_pred HHHHHHHHHh
Confidence 4443333333
No 110
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.08 E-value=3.2e-08 Score=106.74 Aligned_cols=185 Identities=17% Similarity=0.336 Sum_probs=123.5
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHH---HHHH-C--C---CcEEEEeecCCCCCCCCcCCCHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR---TVIA-D--G---VKEVWLSSEDTGAYGRDIGVNLPI 261 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~---~l~~-~--G---vkeI~L~g~d~~~yg~d~~~~l~e 261 (629)
.....|..+.|||.+|.||..+.. |..|..++++|++++. ..+. . | ++.|+|+| .|..+ .++..
T Consensus 101 r~t~CvSsq~GC~~~C~FC~tg~~-g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmG-----mGEPL-ln~~~ 173 (354)
T PRK14460 101 RYTQCLSCQVGCAMGCTFCSTGTM-GFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMG-----MGEPL-LNLDE 173 (354)
T ss_pred ceeEEeeCCCCcCCCCccCCCCCC-CCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEec-----CCccc-CCHHH
Confidence 455789999999999999987643 5567889999999994 3332 2 3 67888887 24433 23344
Q ss_pred HHHHHHHhCCCCCC----ceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcC---CCCHHHHHH
Q 006836 262 LLNAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRT 334 (629)
Q Consensus 262 LL~~L~~~i~~~~~----~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R---~~t~e~~~e 334 (629)
+++.+.......+. ..+.+++ +- +.+.+ .++. ..+ ...+.+.+.|.+++..+.+.+ .++.+++.+
T Consensus 174 v~~~l~~l~~~~Gl~~~~r~itvsT-~G--~~~~i---~~L~-~~~-l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~ 245 (354)
T PRK14460 174 VMRSLRTLNNEKGLNFSPRRITVST-CG--IEKGL---RELG-ESG-LAFLAVSLHAPNQELRERIMPKAARWPLDDLIA 245 (354)
T ss_pred HHHHHHHHhhhhccCCCCCeEEEEC-CC--ChHHH---HHHH-hCC-CcEEEEeCCCCCHHHHHHhcCccccCCHHHHHH
Confidence 44444321110022 3566653 22 12332 2233 333 368889999999999977744 478888888
Q ss_pred HHHHHHH-hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 335 VVDTLIE-LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 335 ~I~~lr~-~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
+++.... .-..+.+..-+|=| ..++++|+++.++|++.++. .+++-+|.|.+|.+.
T Consensus 246 al~~~~~~~~~~v~iey~LI~G-vNDs~ed~~~l~~~l~~~~~-~VnLIpyn~~~g~~y 302 (354)
T PRK14460 246 ALKSYPLKTRERVTFEYLLLGG-VNDSLEHARELVRLLSRTKC-KLNLIVYNPAEGLPY 302 (354)
T ss_pred HHHHHHHhcCCeEEEEEEEECC-CCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCCCCC
Confidence 7775443 31124444444444 69999999999999999975 799999999999874
No 111
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.08 E-value=1.3e-08 Score=109.14 Aligned_cols=187 Identities=18% Similarity=0.328 Sum_probs=134.0
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH-----------------CCCcEEEEeecCCCCCCC
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-----------------DGVKEVWLSSEDTGAYGR 253 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~-----------------~GvkeI~L~g~d~~~yg~ 253 (629)
.....|.++-||+.+|.||++.. -|-.|..++.||++++..+.+ ..++.|+|.| .|.
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~-~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMG-----MGE 179 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGT-LGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMG-----MGE 179 (371)
T ss_pred CceEEEEccCCccCCCCcccCCC-CCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEc-----cCC
Confidence 45689999999999999998765 477899999999999987643 1267889887 355
Q ss_pred CcCCCHHHHHHHHHHhCCCC----CCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHh-h--cCC
Q 006836 254 DIGVNLPILLNAIVAELPPD----GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA-M--NRE 326 (629)
Q Consensus 254 d~~~~l~eLL~~L~~~i~~~----~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~-M--~R~ 326 (629)
.+ .++..+++++.-..... +..++.+++.- +.+.+ .++.... .-..|.+++-+.+++..+. | +|.
T Consensus 180 PL-~NydnV~~ai~il~d~~g~~is~R~ITVST~G---ivp~I---~~la~~~-~~v~LAiSLHA~~~e~R~~lmPin~~ 251 (371)
T PRK14461 180 PF-ANYDRWWQAVERLHDPQGFNLGARSMTVSTVG---LVKGI---RRLANER-LPINLAISLHAPDDALRSELMPVNRR 251 (371)
T ss_pred ch-hhHHHHHHHHHHhcCccccCcCCCceEEEeec---chhHH---HHHHhcc-cCceEEEEeCCCCHHHHHHhcCcccC
Confidence 43 35667777775422110 12456665442 23333 3333322 2347889999999999854 3 689
Q ss_pred CCHHHHHHHHHHHHHhCCC--CEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-----CCeEEEEeceeCCCCccc
Q 006836 327 YTLSDFRTVVDTLIELVPG--MQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAA 393 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pg--i~i~td~IvGfPGETeedf~eTl~fl~~l~-----~d~v~i~~ysP~PGTpa~ 393 (629)
|..+++.++++...+. .+ +.+..-+|=| -.++++|..+..++++.++ ..+|++-+|.|.||+++.
T Consensus 252 ypl~eLl~a~~~y~~~-t~rrit~EYvLi~g-vNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~ 323 (371)
T PRK14461 252 YPIADLMAATRDYIAK-TRRRVSFEYVLLQG-KNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG 323 (371)
T ss_pred CCHHHHHHHHHHHHHh-hCCEEEEEEEEECC-CCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC
Confidence 9999999999888654 24 5555455555 4999999999999999883 368999999999999743
No 112
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.08 E-value=1.6e-08 Score=108.71 Aligned_cols=185 Identities=16% Similarity=0.238 Sum_probs=127.5
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCC--CcEEEEee-cCCCCCCCCcCCCHHHHHHHHHH
Q 006836 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG--VKEVWLSS-EDTGAYGRDIGVNLPILLNAIVA 268 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~G--vkeI~L~g-~d~~~yg~d~~~~l~eLL~~L~~ 268 (629)
....|.++.||+.+|.||..+.. |..|..+.++|++++..+...| +..|+|+| ++-..+ .++.+.++.+.+
T Consensus 100 ~t~CvssqvGC~~~C~FC~tg~~-g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln-----~~v~~~i~~l~~ 173 (347)
T PRK14453 100 ESFCISSQCGCGFGCRFCATGSI-GLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALAN-----PELFDALKILTD 173 (347)
T ss_pred eeEEEecCCCcCCCCCCCCCCCC-CCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCC-----HHHHHHHHHHhc
Confidence 56789999999999999998863 6778899999999999776555 88999998 333222 124444444433
Q ss_pred hCCCC--CCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh---cCCCCHHHHHHHHHHHHH-h
Q 006836 269 ELPPD--GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE-L 342 (629)
Q Consensus 269 ~i~~~--~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M---~R~~t~e~~~e~I~~lr~-~ 342 (629)
. ... +...+.+++.- +.+.++.+.+.+. ...+.+.+-+.+++..+.+ ++.+..+++.++++.... .
T Consensus 174 ~-~~~~~~~r~itVsT~G---~~~~i~~l~~~~~----~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~ 245 (347)
T PRK14453 174 P-NLFGLSQRRITISTIG---IIPGIQRLTQEFP----QVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHT 245 (347)
T ss_pred c-cccCCCCCcEEEECCC---CchhHHHHHhhcc----CcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhc
Confidence 1 101 23456665332 1222233433322 2345568889988887444 466888888887766655 3
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC----CCeEEEEeceeCCCCc
Q 006836 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYK----FPQVHISQFYPRPGTP 391 (629)
Q Consensus 343 ~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~----~d~v~i~~ysP~PGTp 391 (629)
-..+.+..-+|=|+ .++++++++.++|++.++ ...+++-+|.|.++.+
T Consensus 246 ~~~V~iry~LI~Gv-NDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~ 297 (347)
T PRK14453 246 GRKVYIAYIMLEGV-NDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTP 297 (347)
T ss_pred CCcEEEEEEeECCC-CCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCC
Confidence 12477777888887 899999999999999884 5789999999998753
No 113
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.07 E-value=1e-07 Score=98.60 Aligned_cols=265 Identities=16% Similarity=0.222 Sum_probs=169.0
Q ss_pred EEEeCCCCCCCCCCCccCc---cCCC--cCCCCHHHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCc-CCCHHHHHHHH
Q 006836 195 ILPINVGCLGACTYCKTKH---ARGH--LGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDI-GVNLPILLNAI 266 (629)
Q Consensus 195 ~V~isrGCp~~CsFC~ip~---~rG~--~Rsr~~e~Iv~Ei~~l~~~--GvkeI~L~g~d~~~yg~d~-~~~l~eLL~~L 266 (629)
.|.-+.||+.+|-||++.. .|-+ -....+|.+++.++..++. +--|..|-|+ |... ...+.+|++++
T Consensus 110 qVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGq-----GEP~lYP~l~~lVqal 184 (414)
T COG2100 110 QVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQ-----GEPLLYPHLVDLVQAL 184 (414)
T ss_pred EecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCC-----CCCccchhHHHHHHHH
Confidence 4556899999999999843 2211 1233588999998888774 3346666554 3332 25789999999
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh-cC-CCCHHHHHHHHHHHHHhCC
Q 006836 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-NR-EYTLSDFRTVVDTLIELVP 344 (629)
Q Consensus 267 ~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M-~R-~~t~e~~~e~I~~lr~~~p 344 (629)
.+ ++ +...+.+. +|...+++.+ +.+ +.+++ ..++.+++.|.+++.-|.| ++ -|+.+.+++..+++.++
T Consensus 185 k~-~~--~v~vVSmQ-Tng~~L~~~l--v~e-LeeAG-LdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a-- 254 (414)
T COG2100 185 KE-HK--GVEVVSMQ-TNGVLLSKKL--VDE-LEEAG-LDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANA-- 254 (414)
T ss_pred hc-CC--CceEEEEe-eCceeccHHH--HHH-HHHhC-CceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhC--
Confidence 76 55 66666654 5655556544 333 33444 6899999999999998766 44 48999999999999998
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC----CeEEEEeceeCCCC-ccccCCCCCHHHHHHHHHHHHHHHHHh--
Q 006836 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKF----PQVHISQFYPRPGT-PAARMKKVPSAVVKKRSRELTSVFEAF-- 417 (629)
Q Consensus 345 gi~i~td~IvGfPGETeedf~eTl~fl~~l~~----d~v~i~~ysP~PGT-pa~~~~~v~~~~~~~R~~~L~~l~~~~-- 417 (629)
+|.+-..=+ -+||=+++++...++|+.+++. ..+.+..|.|+.-- .....+-.|=.+-.++ |.++-++.
T Consensus 255 ~idvlIaPv-~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrw---LrelEketg~ 330 (414)
T COG2100 255 GIDVLIAPV-WLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRW---LRELEKETGV 330 (414)
T ss_pred CCCEEEeee-ecCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHH---HHHHHHHhCC
Confidence 775433221 2578899999999999999953 34566777665322 1111223344444444 44443321
Q ss_pred c-----------------ccccCCCcEEEE--EEEEEecCCceEEEEecCCeEEEECCC---CCCCCCEEEEEEEEEeec
Q 006836 418 T-----------------PYLGMEGRVERI--WITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRW 475 (629)
Q Consensus 418 ~-----------------~~~~~vG~~~~V--lve~~~~~~~~~~Grt~~y~~V~v~~~---~~~~G~~v~V~I~~~~~~ 475 (629)
. ...-..|.+..+ ..++.-++ ..+|... .+.|.+... ...+|+.|+|+|+.....
T Consensus 331 kpLilkP~~fG~~pRp~lp~PF~rGevv~aevV~~Gr~kG--EmlavAr-dRvIav~~~~~~~~~vG~~vkvrIvr~khn 407 (414)
T COG2100 331 KPLILKPGEFGMHPRPRLPKPFKRGEVVKAEVVLPGRLKG--EMLAVAR-DRVIAVINSNEGALLVGDRVKVRIVRTKHN 407 (414)
T ss_pred CccccChhhcCCCcCCCCCCccccCcEEEEEEEecceecc--eEEEEec-ccEEEEecCchhhhccCceEEEEEEEccCc
Confidence 1 112345776654 33444333 2445544 344444332 247899999999998888
Q ss_pred eEEEEE
Q 006836 476 SVFGEV 481 (629)
Q Consensus 476 ~l~g~~ 481 (629)
-.+|.+
T Consensus 408 I~Ia~p 413 (414)
T COG2100 408 IYIAVP 413 (414)
T ss_pred eEEeee
Confidence 777765
No 114
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.06 E-value=9.3e-09 Score=105.20 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=117.9
Q ss_pred EEEEEeCCCCCCCCCCCccCccC--CCcCCCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcCCC-HHHHHHHH
Q 006836 193 VEILPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVN-LPILLNAI 266 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~r--G~~Rsr~~e~Iv~Ei~~l~~---~GvkeI~L~g~d~~~yg~d~~~~-l~eLL~~L 266 (629)
...+....|||++|.||..+... ...+.+++++|++++..... .....|.|+|.+.+.+ .+ +.++++.+
T Consensus 21 ~~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~-----~~~~~~l~~~~ 95 (246)
T PRK11145 21 IRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQ-----AEFVRDWFRAC 95 (246)
T ss_pred eEEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcC-----HHHHHHHHHHH
Confidence 34667789999999999876432 22355789999999887643 2335688887554432 22 34677777
Q ss_pred HHhCCCCCCceEEEeecCCcc--hhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 006836 267 VAELPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (629)
Q Consensus 267 ~~~i~~~~~~~iri~~~~p~~--i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p 344 (629)
.+. +. .+.+. ++... ..+.+ .+++.. ...+.+++.+.+++..+.+.. .+.+...+.++.+.+.
T Consensus 96 k~~----g~-~i~l~-TNG~~~~~~~~~---~~ll~~---~d~v~islk~~~~e~~~~~~g-~~~~~~l~~i~~l~~~-- 160 (246)
T PRK11145 96 KKE----GI-HTCLD-TNGFVRRYDPVI---DELLDV---TDLVMLDLKQMNDEIHQNLVG-VSNHRTLEFARYLAKR-- 160 (246)
T ss_pred HHc----CC-CEEEE-CCCCCCcchHHH---HHHHHh---CCEEEECCCcCChhhcccccC-CChHHHHHHHHHHHhC--
Confidence 542 32 34443 23221 12333 233321 456789999999998887754 3557788888889888
Q ss_pred CCEEEE--EEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEeceeCCCCc
Q 006836 345 GMQIAT--DIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTP 391 (629)
Q Consensus 345 gi~i~t--d~IvGfPGETeedf~eTl~fl~~l~-~d~v~i~~ysP~PGTp 391 (629)
|+.+.. -+|-|+ .++++++++.++|+++++ +..+++.+|.|.++.+
T Consensus 161 g~~v~i~~~li~g~-nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~ 209 (246)
T PRK11145 161 NQKTWIRYVVVPGW-TDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHK 209 (246)
T ss_pred CCcEEEEEEEECCC-CCCHHHHHHHHHHHHhcCCcceEEEecCCccchhH
Confidence 655444 444443 456779999999999985 5788889999887654
No 115
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.06 E-value=1.9e-08 Score=105.93 Aligned_cols=194 Identities=17% Similarity=0.234 Sum_probs=142.8
Q ss_pred EEEEeCCCCCCCCCCCccCc--cCCC-cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 006836 194 EILPINVGCLGACTYCKTKH--ARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~--~rG~-~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i 270 (629)
.-|.++.-|+++|.||.-.. ...+ ....++|+|..-++..++.|++.|.|+|+.-.. ..+|.++++.+.+.
T Consensus 13 LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPll-----R~dl~eIi~~l~~~- 86 (322)
T COG2896 13 LRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLL-----RKDLDEIIARLARL- 86 (322)
T ss_pred EEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchh-----hcCHHHHHHHHhhc-
Confidence 35788999999999997543 1111 124579999999999999999999999853221 25678888888753
Q ss_pred CCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-EE
Q 006836 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IA 349 (629)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~-i~ 349 (629)
+...+.++ +|-..+.. .++.++.++ +..+++.+.|.+++.++.+.+...++++.+-|+.+.++ |+. +.
T Consensus 87 ---~~~~islT-TNG~~L~~----~a~~Lk~AG-l~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~--Gl~pVK 155 (322)
T COG2896 87 ---GIRDLSLT-TNGVLLAR----RAADLKEAG-LDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEA--GLTPVK 155 (322)
T ss_pred ---ccceEEEe-cchhhHHH----HHHHHHHcC-CcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHc--CCCceE
Confidence 34556664 45443333 333344455 79999999999999999998877799999999999999 864 44
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHH
Q 006836 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406 (629)
Q Consensus 350 td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R 406 (629)
.+..+ ++|-+++++.+.++|++..+. .+.+--|+|.-....+.+. -++..+..++
T Consensus 156 lN~Vv-~kgvNd~ei~~l~e~~~~~~~-~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~ 211 (322)
T COG2896 156 LNTVL-MKGVNDDEIEDLLEFAKERGA-QLRFIELMPLGEGNSWRLDKYLSLDEILRK 211 (322)
T ss_pred EEEEE-ecCCCHHHHHHHHHHHhhcCC-ceEEEEEeecCcccchhhhccccHHHHHHH
Confidence 44433 366799999999999999997 6788888888765555554 4665554444
No 116
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.06 E-value=2.8e-08 Score=107.36 Aligned_cols=187 Identities=15% Similarity=0.274 Sum_probs=125.6
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH---C------C--CcEEEEeecCCCCCCCCcC--C
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---D------G--VKEVWLSSEDTGAYGRDIG--V 257 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~---~------G--vkeI~L~g~d~~~yg~d~~--~ 257 (629)
.....|.++.||+.+|.||..+. .|..|..++++|++++..+.+ . | +++|+|.| .|..+. .
T Consensus 120 ~~tlCvSsQvGC~m~C~FCatg~-~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmG-----mGEPLlN~d 193 (373)
T PRK14459 120 RATLCISSQAGCGMACPFCATGQ-GGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMG-----MGEPLANYK 193 (373)
T ss_pred CceEEEEecCCCCCcCCCCCCCC-CCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEec-----CCcchhhHH
Confidence 45679999999999999999765 366788999999999987653 1 2 67899987 244321 2
Q ss_pred CHHHHHHHHHHhCCC-CCC--ceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh---cCCCCHHH
Q 006836 258 NLPILLNAIVAELPP-DGS--TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSD 331 (629)
Q Consensus 258 ~l~eLL~~L~~~i~~-~~~--~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M---~R~~t~e~ 331 (629)
++.+.++.+.+..+. .++ ..+.+++.- +...+ .++.... +-..|.+.+-|.+++..+.+ +|.|+.++
T Consensus 194 ~V~~~i~~l~~~~~~g~gis~r~ITvST~G---l~~~i---~~la~~~-l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ 266 (373)
T PRK14459 194 RVVAAVRRITAPAPEGLGISARNVTVSTVG---LVPAI---RKLADEG-LPVTLAVSLHAPDDELRDELVPVNTRWKVDE 266 (373)
T ss_pred HHHHHHHHHhCcccccCCccCCEEEEECcC---chhHH---HHHHHhc-CCeEEEEEeCCCCHHHHHHhcCcccCCCHHH
Confidence 234444444331000 022 255555331 22322 2233222 11258899999999998655 36799999
Q ss_pred HHHHHHHHHHhCCC--CEEEEEEEEcCCCCCHHHHHHHHHHHHhcC--CCeEEEEeceeCCCCcc
Q 006836 332 FRTVVDTLIELVPG--MQIATDIICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPA 392 (629)
Q Consensus 332 ~~e~I~~lr~~~pg--i~i~td~IvGfPGETeedf~eTl~fl~~l~--~d~v~i~~ysP~PGTpa 392 (629)
+.++++..... .| +.+..-+|=|+ .+++++.++..++++.++ ...+++-+|.|.+|.+.
T Consensus 267 ll~a~~~~~~~-~grrv~ieyvLi~Gv-NDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y 329 (373)
T PRK14459 267 VLDAARYYADA-TGRRVSIEYALIRDI-NDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKW 329 (373)
T ss_pred HHHHHHHHHHH-hCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCC
Confidence 99997776532 15 44544555565 899999999999999985 56899999999998753
No 117
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.05 E-value=3.7e-08 Score=106.59 Aligned_cols=185 Identities=16% Similarity=0.335 Sum_probs=127.6
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH----------CCCcEEEEeecCCCCCCCCcCCCHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----------DGVKEVWLSSEDTGAYGRDIGVNLP 260 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~----------~GvkeI~L~g~d~~~yg~d~~~~l~ 260 (629)
..+..|.+|-||+.+|.||..+. .|..|..+.++|++++..+.. .++++|+|+| .|..+ .++.
T Consensus 102 ~~t~CvSsQvGC~~~C~FC~t~~-~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mG-----mGEPL-~N~d 174 (372)
T PRK11194 102 RATLCVSSQVGCALECKFCSTAQ-QGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG-----MGEPL-LNLN 174 (372)
T ss_pred CeeEEEecCCCCCCcCCCCCCCC-CCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEec-----CCccc-cCHH
Confidence 45678999999999999999885 366688999999999876543 1278888887 35443 2333
Q ss_pred ---HHHHHHHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh---cCCCCHHHHH
Q 006836 261 ---ILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFR 333 (629)
Q Consensus 261 ---eLL~~L~~~i~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M---~R~~t~e~~~ 333 (629)
+.++.+.+.... .+...+.+++.- +.+.+ .+++.... ..+.+.+-+.+++..+.+ ++.+..+++.
T Consensus 175 ~v~~al~~l~~~~g~~i~~r~itVsTsG---~~~~i---~~l~~~~d--~~LaiSLha~d~e~R~~lmPin~~~~l~~ll 246 (372)
T PRK11194 175 NVVPAMEIMLDDFGFGLSKRRVTLSTSG---VVPAL---DKLGDMID--VALAISLHAPNDELRDEIVPINKKYNIETFL 246 (372)
T ss_pred HHHHHHHHHhhhhccCcCCCeEEEECCC---CchHH---HHHHhccC--eEEEeeccCCCHHHHHHhcCCcccccHHHHH
Confidence 444444432110 012367776432 22333 33333221 356677889999998554 3568888888
Q ss_pred HHHHHHHHhC----CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 334 TVVDTLIELV----PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 334 e~I~~lr~~~----pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
+++....+.- ..+.+..-+|=|+ .++++++++..+|++.++. .+++-+|.|++|.+.
T Consensus 247 ~a~~~y~~~~~~~~rrI~irypLIpGv-NDs~e~a~~La~ll~~l~~-~VnLIPYN~~~~~~~ 307 (372)
T PRK11194 247 AAVRRYLEKSNANQGRVTVEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAPY 307 (372)
T ss_pred HHHHHHHHhcccCCCeEEEEEEeECCC-CCCHHHHHHHHHHHhcCCc-eEEEecCCCCCCCCC
Confidence 7776665543 2478888888887 8999999999999999974 899999999998654
No 118
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.04 E-value=2.3e-08 Score=98.14 Aligned_cols=163 Identities=20% Similarity=0.307 Sum_probs=112.5
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 006836 192 FVEILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~ 269 (629)
..+++.+++|||++|.||..+.... ....+++++++++++.. ...++.|.|+|++...+ .++.++++.+.+
T Consensus 16 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~i~~sGGEPll~-----~~l~~li~~~~~- 88 (191)
T TIGR02495 16 KLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSR-QGLIDGVVITGGEPTLQ-----AGLPDFLRKVRE- 88 (191)
T ss_pred CeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHh-cCCCCeEEEECCcccCc-----HhHHHHHHHHHH-
Confidence 3467788999999999998874322 24568899999999875 23478899998765543 237788888865
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHH-HHHHHHHHHHHhCCCC--
Q 006836 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS-DFRTVVDTLIELVPGM-- 346 (629)
Q Consensus 270 i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e-~~~e~I~~lr~~~pgi-- 346 (629)
. + ..+.+. ++.. ..+. +.+++.. +...++.+++++..+...+.++++...+ ++.+.++.+++. |+
T Consensus 89 ~---g-~~v~i~-TNg~-~~~~---l~~l~~~-g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~--gi~~ 156 (191)
T TIGR02495 89 L---G-FEVKLD-TNGS-NPRV---LEELLEE-GLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRS--GIPF 156 (191)
T ss_pred C---C-CeEEEE-eCCC-CHHH---HHHHHhc-CCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHc--CCCE
Confidence 2 3 345553 3432 1222 3444433 3347889999986665666667665554 899999999998 65
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 347 QIATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 347 ~i~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
.+.+-++-|+.+ ++++++.++++.+++
T Consensus 157 ~i~~~v~~~~~~--~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 157 ELRTTVHRGFLD--EEDLAEIATRIKENG 183 (191)
T ss_pred EEEEEEeCCCCC--HHHHHHHHHHhccCC
Confidence 454555546543 679999999999887
No 119
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.04 E-value=6e-08 Score=104.21 Aligned_cols=184 Identities=16% Similarity=0.300 Sum_probs=125.4
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHC-C-----CcEEEEeecCCCCCCCCcCCCHHHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G-----VKEVWLSSEDTGAYGRDIGVNLPILLN 264 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~-G-----vkeI~L~g~d~~~yg~d~~~~l~eLL~ 264 (629)
.....|.++.||+.+|.||..+.. |..|..++++|++++..+... | +++|+|+| +|... .++..+++
T Consensus 92 ~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~G-----mGEPl-ln~~~v~~ 164 (343)
T PRK14468 92 RKTICVSTMVGCPAGCAFCATGAM-GFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMG-----MGEPL-LNYENVLK 164 (343)
T ss_pred CCEEEEEecCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEec-----cCccc-cCHHHHHH
Confidence 355789999999999999987653 567889999999999876543 2 56888987 24433 24456666
Q ss_pred HHHHhCCCCCC----ceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc---CCCCHHHHHHHHH
Q 006836 265 AIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVD 337 (629)
Q Consensus 265 ~L~~~i~~~~~----~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~---R~~t~e~~~e~I~ 337 (629)
.+.......+. ..+.+++. - +.+.+ .+++... +-..+.+.+-+.+++..+++. ++++.+++.+.++
T Consensus 165 ~i~~l~~~~g~~l~~r~itvST~-G--~~~~i---~~L~~~~-l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~ 237 (343)
T PRK14468 165 AARIMLHPQALAMSPRRVTLSTV-G--IPKGI---RRLAEED-LGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVR 237 (343)
T ss_pred HHHHhcccccccccCceEEEECC-C--ChHHH---HHHHHhC-cCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHH
Confidence 65432111111 24556532 2 22333 2333322 112588999999999997774 6789999999998
Q ss_pred HHHHhC-CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCC
Q 006836 338 TLIELV-PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (629)
Q Consensus 338 ~lr~~~-pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGT 390 (629)
...+.. ..+.+..-+|=|+ .++++++.+..++++.+. ..+++-+|.|.++.
T Consensus 238 ~~~~~~~~~V~ieyvLI~Gv-NDs~e~~~~L~~ll~~~~-~~VnLIPynp~~~~ 289 (343)
T PRK14468 238 HYQAVTGRRVTLEYTMLKGV-NDHLWQAELLADLLRGLV-SHVNLIPFNPWEGS 289 (343)
T ss_pred HHHHhcCCeEEEEEEEeCCC-cCCHHHHHHHHHHHhcCC-cEEEEEcCCCCCCC
Confidence 655542 1255555555565 799999999999999986 47888899987764
No 120
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.03 E-value=3.7e-08 Score=104.86 Aligned_cols=198 Identities=17% Similarity=0.191 Sum_probs=133.0
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~ 268 (629)
+....++++.+|+.+|.||........ .+..+++++++.++ +.|+..|.|+|.+-..+ .++.++++.+.+
T Consensus 27 Pl~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~---e~g~~~V~i~GGEPLL~-----pdl~eiv~~~~~ 98 (318)
T TIGR03470 27 PLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVD---ECGAPVVSIPGGEPLLH-----PEIDEIVRGLVA 98 (318)
T ss_pred CCEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHH---HcCCCEEEEeCcccccc-----ccHHHHHHHHHH
Confidence 456789999999999999976432211 23568888877655 35889999998665554 357888888765
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHhCCCCE
Q 006836 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIELVPGMQ 347 (629)
Q Consensus 269 ~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M-~R~~t~e~~~e~I~~lr~~~pgi~ 347 (629)
. + ..+.+. +|...+.+. +.++...+ ...+.+.+.+.. +.-..+ +++.+.+...+.|+.++++ |+.
T Consensus 99 ~----g-~~v~l~-TNG~ll~~~---~~~l~~~~--~~~i~VSLDG~~-e~hd~~~~~~g~f~~~l~~I~~l~~~--G~~ 164 (318)
T TIGR03470 99 R----K-KFVYLC-TNALLLEKK---LDKFEPSP--YLTFSVHLDGLR-EHHDASVCREGVFDRAVEAIREAKAR--GFR 164 (318)
T ss_pred c----C-CeEEEe-cCceehHHH---HHHHHhCC--CcEEEEEEecCc-hhhchhhcCCCcHHHHHHHHHHHHHC--CCc
Confidence 2 2 234443 566555543 33343333 346778888754 444433 5567899999999999999 887
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHHHHHHHHHHHH
Q 006836 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412 (629)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~~~~R~~~L~~ 412 (629)
+...+.+ +++++.+++.+.++++.+++++.+.+.+..|+..++-... .+..++.++.++++.+
T Consensus 165 v~v~~tv-~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~-~l~~~e~~~~~~~~~~ 227 (318)
T TIGR03470 165 VTTNTTL-FNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDH-FLGRRQTKKLFREVLS 227 (318)
T ss_pred EEEEEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccccc-ccCHHHHHHHHHHHHh
Confidence 7665543 3678999999999999999999999887777654442111 2444444444444433
No 121
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.01 E-value=6.9e-08 Score=104.21 Aligned_cols=186 Identities=17% Similarity=0.300 Sum_probs=123.9
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH------CCCcEEEEeecCCCCCCCCcCCCHH---H
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIGVNLP---I 261 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~------~GvkeI~L~g~d~~~yg~d~~~~l~---e 261 (629)
.....|..+.||+.+|.||..+.. |..|.+++++|++++..+.. .++++|+|.|. |..+ .++. +
T Consensus 104 ~~t~cVSsQ~GC~l~C~fC~t~~~-g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGm-----GEPL-ln~d~v~~ 176 (355)
T TIGR00048 104 RATVCVSSQVGCALGCTFCATAKG-GFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGM-----GEPL-LNLNEVVK 176 (355)
T ss_pred CcEEEEecCCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecC-----Cchh-hCHHHHHH
Confidence 456789999999999999998653 55678999999999876532 25778999872 4432 2333 3
Q ss_pred HHHHHHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh---cCCCCHHHHHHHHH
Q 006836 262 LLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVD 337 (629)
Q Consensus 262 LL~~L~~~i~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M---~R~~t~e~~~e~I~ 337 (629)
+++.+.+.... .+...+.+++ +- +.+.+ .+++... +-..+.+.+-+.+++..+.+ +|+++.+++.+.++
T Consensus 177 ~l~~l~~~~g~~i~~~~itisT-~G--~~~~i---~~l~~~~-l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~ 249 (355)
T TIGR00048 177 AMEIMNDDFGLGISKRRITIST-SG--VVPKI---DILADKM-LQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVR 249 (355)
T ss_pred HHHHhhcccccCcCCCeEEEEC-CC--chHHH---HHHHHhC-CCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHH
Confidence 44444321100 0123566653 22 22333 3333322 11256799999999999775 67789999998887
Q ss_pred HH-HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 338 TL-IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 338 ~l-r~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
.+ ++.--.+.+..-+|=|+ .++++++.+..++++.++. .+++-+|.|.++.++
T Consensus 250 ~~~~~~g~~VtieyvLI~Gv-NDs~e~a~~La~llk~l~~-~VnLIPynp~~~~~~ 303 (355)
T TIGR00048 250 RYLNKTGRRVTFEYVLLDGV-NDQVEHAEELAELLKGTKC-KVNLIPWNPFPEADY 303 (355)
T ss_pred HHHHHhCCEEEEEEEEECCC-CCCHHHHHHHHHHHhcCCC-ceEEEecccCCCCCC
Confidence 55 44411245555566565 7889999999999999974 788999999888754
No 122
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.01 E-value=3e-08 Score=106.67 Aligned_cols=184 Identities=17% Similarity=0.253 Sum_probs=123.2
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcC--CCHHHHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~---~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~ 265 (629)
.....|.++.||+.+|.||..+. .|..|..++++|++++..+.. .++..|+|+| +|..+. ..+.++++.
T Consensus 100 ~~t~cissq~GC~l~C~fC~tg~-~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~G-----mGEPLln~d~v~~~i~~ 173 (343)
T PRK14469 100 RITACISTQVGCPVKCIFCATGQ-SGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMG-----MGEPLLNYENVIKSIKI 173 (343)
T ss_pred CeEEEEEecCCCCCcCcCCCCCC-CCccccCCHHHHHHHHHHHHHhccCCcCeEEEEc-----cChhhhhHHHHHHHHHH
Confidence 45678999999999999998754 344577889999999865432 4678899987 244321 123344444
Q ss_pred HHHhC-CCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh---cCCCCHHHHHHHHHHHHH
Q 006836 266 IVAEL-PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE 341 (629)
Q Consensus 266 L~~~i-~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M---~R~~t~e~~~e~I~~lr~ 341 (629)
+...- ...+...+.++ ++- +.+.+ .++... ++-..+.+++.+.+++..+.+ +++++.+++.+.++.+.+
T Consensus 174 l~~~~~~~~g~~~itis-TnG--~~~~i---~~L~~~-~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~ 246 (343)
T PRK14469 174 LNHKKMKNIGIRRITIS-TVG--IPEKI---IQLAEE-GLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQK 246 (343)
T ss_pred HhchhcccCCCCeEEEE-CCC--ChHHH---HHHHhh-CCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHH
Confidence 43210 00122356664 332 23333 333333 222369999999999987653 678999999999987665
Q ss_pred h-CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCC
Q 006836 342 L-VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (629)
Q Consensus 342 ~-~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PG 389 (629)
. -..+.+..-+|-| ..++++|+++..++++.++. .+++-+|.|.++
T Consensus 247 ~~~~~v~i~yvlI~g-~NDs~ed~~~La~llk~~~~-~VnLIpynp~~~ 293 (343)
T PRK14469 247 KTGNRVTIEYILIKG-FNDEIEDAKKLAELLKGLKV-FVNLIPVNPTVP 293 (343)
T ss_pred HhCCeEEEEEEEECC-CCCCHHHHHHHHHHHhccCc-EEEEEecCCCCc
Confidence 4 1234554445555 47899999999999999874 689999998766
No 123
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.99 E-value=2.2e-08 Score=98.72 Aligned_cols=196 Identities=16% Similarity=0.185 Sum_probs=139.5
Q ss_pred EeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCc
Q 006836 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST 276 (629)
Q Consensus 197 ~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~ 276 (629)
-+.+-|..+|..|.-.+.++.. .-+-+++++++..+.+.|+..+.+.|.-. +-|.=--..+.+.|+++.+... -..
T Consensus 16 VTG~yC~lnC~HCg~~~L~~Mi-~vt~~~l~k~~~el~kkGy~g~llSGGm~-srg~VPl~kf~d~lK~lke~~~--l~i 91 (275)
T COG1856 16 VTGAYCSLNCPHCGRHYLEHMI-KVTTKSLLKRCMELEKKGYEGCLLSGGMD-SRGKVPLWKFKDELKALKERTG--LLI 91 (275)
T ss_pred EeccceEecChHHHHHHHHHhc-ccchHHHHHHHHHHHhcCceeEEEeCCcC-CCCCccHHHHHHHHHHHHHhhC--eEE
Confidence 4677799999999887776643 23348899999999999999999987422 2221001356778888877642 122
Q ss_pred eEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc
Q 006836 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (629)
Q Consensus 277 ~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~-R~~t~e~~~e~I~~lr~~~pgi~i~td~IvG 355 (629)
..++++. .+. ..+.++... ..-+.+-+ -|++++++++- -..+.++|.+.++.+++. |+.+..++++|
T Consensus 92 naHvGfv-----dE~---~~eklk~~~-vdvvsLDf-vgDn~vIk~vy~l~ksv~dyl~~l~~L~e~--~irvvpHitiG 159 (275)
T COG1856 92 NAHVGFV-----DES---DLEKLKEEL-VDVVSLDF-VGDNDVIKRVYKLPKSVEDYLRSLLLLKEN--GIRVVPHITIG 159 (275)
T ss_pred EEEeeec-----cHH---HHHHHHHhc-CcEEEEee-cCChHHHHHHHcCCccHHHHHHHHHHHHHc--CceeceeEEEE
Confidence 3344433 221 122222222 23344444 35677777664 467999999999999999 99999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHHHHHHHH
Q 006836 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408 (629)
Q Consensus 356 fPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~~~~R~~ 408 (629)
+.+-.-..=.+.++.+.+..+|.+-+..+.|.|||.+.+.+.+|.++..+-.+
T Consensus 160 L~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~ 212 (275)
T COG1856 160 LDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVK 212 (275)
T ss_pred eccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHH
Confidence 98777666678999999999999999999999999999888777665544333
No 124
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.98 E-value=7.7e-08 Score=102.97 Aligned_cols=179 Identities=13% Similarity=0.237 Sum_probs=124.6
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~---~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~ 267 (629)
.....|.++-||+.+|+||.... .|..|....++|++++-.+.+ ..+.+|+|.| +|.++ .++..+++.+.
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~-~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmG-----mGEPL-~N~d~V~~~~~ 176 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAK-LEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMG-----MGEPM-HNYFNVIRAAS 176 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCC-CCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEc-----CCcch-hhHHHHHHHHH
Confidence 35679999999999999999865 466788899999999977654 3578999987 46553 34455555554
Q ss_pred HhCCCC-----CCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh---cCCCCHHHHHHHHHHH
Q 006836 268 AELPPD-----GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTL 339 (629)
Q Consensus 268 ~~i~~~-----~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M---~R~~t~e~~~e~I~~l 339 (629)
- +... +..++++++. - +.+.+ .++..... -..|.+++-+.+++....+ ++.|..+++.++++.+
T Consensus 177 ~-l~~~~~~~~~~r~itvST~-G--~~~~i---~~l~~~~~-~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~ 248 (342)
T PRK14465 177 I-LHDPDAFNLGAKRITISTS-G--VVNGI---RRFIENKE-PYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDF 248 (342)
T ss_pred H-HhChhhhcCCCCeEEEeCC-C--chHHH---HHHHhhcc-CceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHH
Confidence 2 2210 2236666532 2 22333 33332221 1368889999999998665 6889999999999977
Q ss_pred HHhCCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEecee
Q 006836 340 IELVPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (629)
Q Consensus 340 r~~~pg-i~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP 386 (629)
.+.... +.+..-+|=|+ .++++++++..++++.++ ..+++-+|.|
T Consensus 249 ~~~~~r~v~ieyvLI~Gv-NDs~eda~~L~~ll~~l~-~kVnLIPyN~ 294 (342)
T PRK14465 249 TRELKRRITFEYVMIPGV-NMGRENANKLVKIARSLD-CKINVIPLNT 294 (342)
T ss_pred HHHcCCEEEEEEEEECCc-cCCHHHHHHHHHHHhhCC-CcEEEEccCC
Confidence 644222 34444455555 689999999999999987 5789999998
No 125
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.98 E-value=5.3e-08 Score=104.18 Aligned_cols=184 Identities=17% Similarity=0.226 Sum_probs=128.7
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC-
Q 006836 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL- 270 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~-GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i- 270 (629)
..+|.++-||+.+|.||.... .|..|..+.++|++++..+.+. .+++|+|+| +|.+. .++.++++.+....
T Consensus 97 t~CvSsQvGC~~~C~FC~tg~-~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmG-----mGEPl-~N~d~vl~ai~~l~~ 169 (344)
T PRK14464 97 GLCVSTQVGCAVGCVFCMTGR-SGLLRQLGSAEIVAQVVLARRRRAVKKVVFMG-----MGEPA-HNLDNVLEAIDLLGT 169 (344)
T ss_pred cEEEEccCCcCCCCCcCcCCC-CCCCCCCCHHHHHHHHHHHHhcCCCCEEEEec-----cCccc-CCHHHHHHHHHHhhc
Confidence 579999999999999998754 3667888999999999987764 689999998 34443 35566666654311
Q ss_pred -CCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHhCCCC
Q 006836 271 -PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGM 346 (629)
Q Consensus 271 -~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~---R~~t~e~~~e~I~~lr~~~pgi 346 (629)
...+...+.++++. +.+...++.. ..+-..|.+.+.+.+++..+.+. +.|+.+++.++++.+.+.. |-
T Consensus 170 ~~~i~~r~itiST~G---~~~~i~rL~~----~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~-gr 241 (344)
T PRK14464 170 EGGIGHKNLVFSTVG---DPRVFERLPQ----QRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARAT-GY 241 (344)
T ss_pred hhcCCCceEEEeccc---CchHHHHHHH----hcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHH-CC
Confidence 00123455554332 1222222322 12234677889999999986654 5789999999988887663 53
Q ss_pred --EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccc
Q 006836 347 --QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (629)
Q Consensus 347 --~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~ 393 (629)
.+..-+|=|. .+++++..+..++++.+.. .+++-+|.|.+|++..
T Consensus 242 ri~~EyvLl~GV-NDs~e~a~~L~~~l~~~~~-~vNLIPyN~v~g~~~~ 288 (344)
T PRK14464 242 PIQYQWTLLEGV-NDSDEEMDGIVRLLKGKYA-VMNLIPYNSVDGDAYR 288 (344)
T ss_pred EEEEEEEEeCCC-CCCHHHHHHHHHHHhcccc-ccceecCCccCCCCcc
Confidence 3343344454 8999999999999998764 6899999999998643
No 126
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.98 E-value=1.1e-07 Score=102.23 Aligned_cols=187 Identities=16% Similarity=0.265 Sum_probs=126.6
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCcC--CCHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIG--VNLPIL 262 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~------GvkeI~L~g~d~~~yg~d~~--~~l~eL 262 (629)
.....|.++.|||.+|.||..+. .|..|..++++|++++..+... ....|+|.| .|..+. ..+.++
T Consensus 109 r~t~CvSsQvGC~~~C~FCatg~-~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmG-----mGEPL~N~d~v~~~ 182 (356)
T PRK14462 109 KYTVCVSSQVGCKVGCAFCLTAK-GGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMG-----MGEPLDNLDNVSKA 182 (356)
T ss_pred CceEeeeccccCCCCCccCCCCC-CCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeC-----CcccccCHHHHHHH
Confidence 45679999999999999998774 3667889999999999865442 144677774 244331 223444
Q ss_pred HHHHHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh---cCCCCHHHHHHHHHH
Q 006836 263 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT 338 (629)
Q Consensus 263 L~~L~~~i~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M---~R~~t~e~~~e~I~~ 338 (629)
++.+.+.... .+...+.+++.- +.+.++ ++.... +-..+.+.+-+.+++..+.+ ++.|..++++++++.
T Consensus 183 l~~l~~~~Gl~~~~r~itVsTsG---~~~~i~---~L~~~d-l~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~ 255 (356)
T PRK14462 183 IKIFSENDGLAISPRRQTISTSG---LASKIK---KLGEMN-LGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRK 255 (356)
T ss_pred HHHhcCccCCCcCCCceEEECCC---ChHHHH---HHHhcC-CCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHH
Confidence 4444432100 012355665332 223333 333322 12456778999999998665 567889999998874
Q ss_pred HH-HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 339 LI-ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 339 lr-~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
.. +.-..+.+..-+|=|+ .+++++.+++.+|++.++ ..+++-+|.|+++.+.
T Consensus 256 y~~~~~~~i~ieyvLI~Gv-NDs~e~a~~La~llk~l~-~~VnLIPyn~~~~~~~ 308 (356)
T PRK14462 256 FPIDQRKRVMFEYLVIKDV-NDDLKSAKKLVKLLNGIK-AKVNLILFNPHEGSKF 308 (356)
T ss_pred HHHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHhhcC-cEEEEEeCCCCCCCCC
Confidence 44 4422366776777776 899999999999999987 5899999999998864
No 127
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.87 E-value=7.1e-08 Score=100.10 Aligned_cols=191 Identities=17% Similarity=0.269 Sum_probs=134.6
Q ss_pred EEEEeCCCCCCC----CCCCccCccCCCcCCCCHHHHHHHHHHHHHC-C--CcE--E-EEeecCCCCCCCCcC-CCHHHH
Q 006836 194 EILPINVGCLGA----CTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G--VKE--V-WLSSEDTGAYGRDIG-VNLPIL 262 (629)
Q Consensus 194 a~V~isrGCp~~----CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~-G--vke--I-~L~g~d~~~yg~d~~-~~l~eL 262 (629)
..|--++||.+. |.+|.++.- +.....+.+++++++...+.. . ..+ | .|+++.|.. ..+.. .....+
T Consensus 49 ~vILrT~GC~w~~~~gC~MCgY~~d-~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD-~~EVP~e~R~~I 126 (358)
T COG1244 49 TVILRTRGCRWYREGGCYMCGYPAD-SAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLD-PEEVPREARRYI 126 (358)
T ss_pred EEEEecCCcceeccCCcceeccccc-cCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCC-hhhCCHHHHHHH
Confidence 345568999874 999998763 235667899999999887763 1 223 3 344433322 12221 123445
Q ss_pred HHHHHHhCCCCCCceEEEeecCCcchhH-HHHHHHHHHhCCCcccccccccCCCCHHHH-HhhcCCCCHHHHHHHHHHHH
Q 006836 263 LNAIVAELPPDGSTMLRIGMTNPPFILE-HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREYTLSDFRTVVDTLI 340 (629)
Q Consensus 263 L~~L~~~i~~~~~~~iri~~~~p~~i~~-~l~el~~l~~~~~~~~~l~IGlESgsd~vL-k~M~R~~t~e~~~e~I~~lr 340 (629)
++.|.+ .+ ....+-+. .+|.++.+ .+.++.+++.. .-..+.||+||.+|++. ..||||.|.++|.++++.++
T Consensus 127 l~~is~-~~--~v~~vvvE-SRpE~I~eE~l~e~~~il~g--k~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir 200 (358)
T COG1244 127 LERISE-ND--NVKEVVVE-SRPEFIREERLEEITEILEG--KIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIR 200 (358)
T ss_pred HHHHhh-cc--ceeEEEee-cCchhcCHHHHHHHHHhhCC--ceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHH
Confidence 555544 22 35667665 78998876 45566665532 24689999999999998 88999999999999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCH----HHHHHHHHHHHhcCCCeEEEEeceeCCCCccccC
Q 006836 341 ELVPGMQIATDIICGFPGETD----EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (629)
Q Consensus 341 ~~~pgi~i~td~IvGfPGETe----edf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~ 395 (629)
.+ |+.+.+++++-.|-=|+ +|...++. ..+-..+.+.+.+-+...||-+..+
T Consensus 201 ~~--g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE~l 256 (358)
T COG1244 201 NY--GAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVEKL 256 (358)
T ss_pred Hc--CCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEecccccchhhHHHHH
Confidence 99 99999999999987665 34444555 3344568999999999999966544
No 128
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.87 E-value=2.6e-07 Score=98.57 Aligned_cols=183 Identities=17% Similarity=0.234 Sum_probs=119.0
Q ss_pred EEEEeCCCCCCCCCCCccCccCCCcC-CCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 194 EILPINVGCLGACTYCKTKHARGHLG-SYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG~~R-sr~~e~Iv~Ei~~l~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
+.+.++.||+.+|.||..... +..+ ..+.+++.+-+..+.+ .|+++|.|+|+|-.... | ..|.++++.+.. ++
T Consensus 98 ~l~~~t~~Cn~~Cr~C~~~~~-~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~-d--~~L~~ll~~l~~-i~ 172 (321)
T TIGR03821 98 VLLIVTGGCAINCRYCFRRHF-PYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAK-D--HRLDWLLNLLEQ-IP 172 (321)
T ss_pred EEEEeCCCcCCcCcCCCCCCc-CCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCC-c--hHHHHHHHHHHh-CC
Confidence 466799999999999986542 2122 2233333333444444 48999999997765432 1 237888888864 55
Q ss_pred CCCCceEEEee----cCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 006836 272 PDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (629)
Q Consensus 272 ~~~~~~iri~~----~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~ 347 (629)
....+|+++ ..|..+++ ++.++++..+.-..+.+.+.+.. ++ .+++.++++.++++ |+.
T Consensus 173 --~~~~iri~tr~~~~~p~rit~---el~~~L~~~~~~~~~~~h~dh~~-Ei---------~d~~~~ai~~L~~~--Gi~ 235 (321)
T TIGR03821 173 --HLKRLRIHTRLPVVIPDRITS---GLCDLLANSRLQTVLVVHINHAN-EI---------DAEVADALAKLRNA--GIT 235 (321)
T ss_pred --CCcEEEEecCcceeeHHHhhH---HHHHHHHhcCCcEEEEeeCCChH-hC---------cHHHHHHHHHHHHc--CCE
Confidence 566788875 34444444 34455544332122233455542 22 15588899999999 987
Q ss_pred EEEEEEE--cCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHH
Q 006836 348 IATDIIC--GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (629)
Q Consensus 348 i~td~Iv--GfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~ 402 (629)
+.....+ |+ .++.+++.+.++++.++++...++|.+.|-.|+.-+ .++.+.
T Consensus 236 v~~qtvllkgi-NDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f---~v~~~~ 288 (321)
T TIGR03821 236 LLNQSVLLRGV-NDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHF---DVDDER 288 (321)
T ss_pred EEecceeeCCC-CCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccc---cCCHHH
Confidence 6544333 44 588999999999999999998899999999887632 455543
No 129
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.86 E-value=3.8e-07 Score=98.00 Aligned_cols=186 Identities=14% Similarity=0.242 Sum_probs=121.6
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcC--CCHHHHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~---GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~ 265 (629)
...++|.++.|||.+|.||..+. .|..|..++++|++++...... ....+++.| .|..+. ..+.++++.
T Consensus 100 ~~t~cvSsqvGC~~~C~FC~tg~-~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mg-----gGEPLln~d~v~~~l~~ 173 (342)
T PRK14454 100 GNSICVSTQVGCRMGCKFCASTI-GGMVRNLTAGEMLDQILAAQNDIGERISNIVLMG-----SGEPLDNYENVMKFLKI 173 (342)
T ss_pred CCEEEEEcCCCCCCcCCcCCCCC-CCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEEC-----CchhhcCHHHHHHHHHH
Confidence 45689999999999999998764 3667889999999999876541 345666554 244321 124455555
Q ss_pred HHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc---CCCCHHHHHHHHHH-HH
Q 006836 266 IVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDT-LI 340 (629)
Q Consensus 266 L~~~i~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~---R~~t~e~~~e~I~~-lr 340 (629)
+.+.... .+...+.+++.- +.+. +.+++...- -..+.+.+-+.+++..+.+- +.+..+++.++++. +.
T Consensus 174 l~~~~gi~~~~r~itvsTsG---~~p~---i~~l~~~~~-~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~ 246 (342)
T PRK14454 174 VNSPYGLNIGQRHITLSTCG---IVPK---IYELADENL-QITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYIN 246 (342)
T ss_pred HhcccccCcCCCceEEECcC---ChhH---HHHHHhhcc-cceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 5431100 011255665321 1222 223332211 12377889999999986653 56788888777765 44
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc
Q 006836 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (629)
Q Consensus 341 ~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTp 391 (629)
+.-..+.+..-+|=|+ .++++++++..++++.+. ..+++-+|.|.++..
T Consensus 247 ~~~~rv~iey~LI~gv-NDs~eda~~La~llk~l~-~~VnLiPyn~~~~~~ 295 (342)
T PRK14454 247 KTNRRITFEYALVKGV-NDSKEDAKELGKLLKGML-CHVNLIPVNEVKENG 295 (342)
T ss_pred HhCCEEEEEEEeECCC-CCCHHHHHHHHHHHhcCC-ceEEEEecCCCCCCC
Confidence 4412356666677776 799999999999999984 589999999987764
No 130
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=98.79 E-value=5.1e-08 Score=98.77 Aligned_cols=179 Identities=21% Similarity=0.319 Sum_probs=124.1
Q ss_pred EEEeCCCCCCCCCCCccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhCC
Q 006836 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELP 271 (629)
Q Consensus 195 ~V~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~L~~~i~ 271 (629)
++-.++-|...|.||++...|.+ .-..-|+. -++.+.+.|+..|+|++.|-.... |.+ .++++-++.|.+.-
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeN---TAeAIasWgl~YiVlTSVDRDDlp-DgGa~HiAkTVq~iK~k~- 188 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPEN---TAEAIASWGLDYIVLTSVDRDDLP-DGGANHIAKTVQKIKEKA- 188 (360)
T ss_pred EEeecCccccCcceeeeecCCCCcCCCCCCccc---HHHHHHHcCCCeEEEEecccccCc-CcchHHHHHHHHHHHhhC-
Confidence 44557889999999999887753 33333444 455566789999999986532221 111 46888888887643
Q ss_pred CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 006836 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (629)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td 351 (629)
..+-+..+.|++-.+ ++ +.+.+...++ .-+.-.+|+...-.--.-.|+.+..+-+.+++.+++..|++-..+.
T Consensus 189 ----p~ilvE~L~pDF~Gd-~~-~Ve~va~SGL-DV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litkts 261 (360)
T KOG2672|consen 189 ----PEILVECLTPDFRGD-LK-AVEKVAKSGL-DVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTS 261 (360)
T ss_pred ----cccchhhcCccccCc-hH-HHHHHHhcCc-cceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhh
Confidence 355566677775443 32 3344444443 3233345554321111124567889999999999999999888899
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEecee
Q 006836 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (629)
Q Consensus 352 ~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP 386 (629)
||.|+ |||+|++.+|++.++..+.|.+.+.+|++
T Consensus 262 iMlgl-getdeei~~tl~dLr~~~vdv~t~gqym~ 295 (360)
T KOG2672|consen 262 IMLGL-GETDEEIKQTLKDLRAADVDVVTFGQYMQ 295 (360)
T ss_pred hhhcc-CCCHHHHHHHHHHHHHcCCcEEecccccC
Confidence 99998 99999999999999999999999988875
No 131
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.79 E-value=6.2e-07 Score=95.19 Aligned_cols=186 Identities=17% Similarity=0.324 Sum_probs=130.5
Q ss_pred CceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHC-C------CcEEEEeecCCCCCCCCcCCCHHHH
Q 006836 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G------VKEVWLSSEDTGAYGRDIGVNLPIL 262 (629)
Q Consensus 190 ~~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~-G------vkeI~L~g~d~~~yg~d~~~~l~eL 262 (629)
......|.++-||+..|+||.+.. .|..|-.+..+|++++..+.+. | +..|+|.| .|... .++..+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~-~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MG-----MGEPl-~N~dnV 171 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQ-GGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMG-----MGEPL-LNLDNV 171 (349)
T ss_pred CCceEEEecCCCcCCCCCeecccc-ccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEec-----CCchh-hhHHHH
Confidence 446678999999999999999865 4778999999999999987742 2 56788887 35543 355566
Q ss_pred HHHHHHhCCC--CCC--ceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh---cCCCCHHHHHHH
Q 006836 263 LNAIVAELPP--DGS--TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTV 335 (629)
Q Consensus 263 L~~L~~~i~~--~~~--~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M---~R~~t~e~~~e~ 335 (629)
+.++.-.... .++ .++.++ +..+.+.+.++.+ . .+-..+.+++.+.+++..+.+ ||.|+.++..++
T Consensus 172 ~~a~~i~~~~~G~~ls~R~iTvS---TsGi~~~I~~l~~--~--~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a 244 (349)
T COG0820 172 VKALEIINDDEGLGLSKRRITVS---TSGIVPRIRKLAD--E--QLGVALAISLHAPNDELRDQLMPINKKYPIEELLEA 244 (349)
T ss_pred HHHHHhhcCcccccccceEEEEe---cCCCchhHHHHHh--h--cCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHH
Confidence 6665432211 112 234443 3334555444442 1 223578899999999987544 788999999999
Q ss_pred HHHHHHhCCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc
Q 006836 336 VDTLIELVPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (629)
Q Consensus 336 I~~lr~~~pg-i~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTp 391 (629)
++...+.-.. +++..-++=|. .+..++..+.+++++.++- +++.-+|.|.||+.
T Consensus 245 ~r~Y~~~t~~rVt~EY~Ll~~V-ND~~e~A~~L~~ll~~~~~-~VNLIP~Np~~~~~ 299 (349)
T COG0820 245 IRYYPEKSGRRVTFEYVLLDGV-NDSLEHAKELAKLLKGIPC-KVNLIPYNPVPGSD 299 (349)
T ss_pred HHhhhhccCceEEEEeeecccc-cCCHHHHHHHHHHhcCCCc-eEEEeecCCCCCCC
Confidence 9888765322 44444455554 6779999999999998874 89999999999998
No 132
>PF01938 TRAM: TRAM domain; InterPro: IPR002792 The TRAM (after TRM2 and miaB) domain is a 60-70-residue-long module that is found in: Two distinct classes of tRNA-modifying enzymes, namely uridine methylases of the TRM2 family and enzymes of the miaB family that are involved in 2- methylthioadenine formation In several other proteins associated with the translation machinery In a family of small uncharacterised archaeal proteins that are predicted to have a role in the regulation of tRNA modification and/or translation The TRAM domain can be found alone or in association with other domains, such as the catalytic biotin/lipoate synthetase-like domain, the RNA methylase domain, the ribosomal S2 domain and the eIF2-beta domain. The TRAM domain is predicted to bind tRNA and deliver the RNA-modifying enzymatic domain to their targets []. Secondary structure prediction indicates that the TRAM domain adopts a simple beta-barrel fold. The conservation pattern of the TRAM domain consists primarily of small and hydrophobic residues that correspond to five beta-strands in the predicted secondary structure [].; PDB: 1YEZ_A 2BH2_A 1UWV_A 1YVC_A.
Probab=98.75 E-value=5.7e-08 Score=78.16 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=46.8
Q ss_pred ccCCCcEEEEEEEEEecCCceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 006836 421 LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 421 ~~~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v 482 (629)
++++|++++|+||+.+ +++.++||+++|..|+|++....+|++++|+|+++.+++|.|+++
T Consensus 1 ~~~~G~~~~VlVe~~~-~~g~~~gr~~~~~~V~v~~~~~~iG~~v~v~I~~~~~~~l~G~~v 61 (61)
T PF01938_consen 1 QSYVGKTLEVLVEELG-DEGQGIGRTDNGKVVFVPGGLPLIGEFVKVRITKAKKNYLFGELV 61 (61)
T ss_dssp ---TTEEEEEEEEEE--TTSEEEEEET-TEEEEETT--T--TEEEEEEEEEE-SSEEEEEEE
T ss_pred CccCCcEEEEEEEEec-CCCEEEEEeCCCeEEEECCCCCCCCCEEEEEEEEeeCCcEEEEEC
Confidence 3689999999999987 445789999999999998764447999999999999999999986
No 133
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.72 E-value=1.5e-06 Score=95.09 Aligned_cols=183 Identities=15% Similarity=0.233 Sum_probs=131.4
Q ss_pred CCceEEEEEeCCCCCCCCCCCccCccCC-CcCCCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 006836 189 RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (629)
Q Consensus 189 ~~~~~a~V~isrGCp~~CsFC~ip~~rG-~~Rsr~~e~Iv~Ei~~l~~~-GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L 266 (629)
+.+-...+.++.+|+.+|.||.-....| .....+.+++.+.++.+.+. ++++|.|+|.|-+.... ..|..+++.|
T Consensus 105 rYp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d---~~L~~iL~~L 181 (417)
T TIGR03820 105 RYPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSD---DYLDWILTEL 181 (417)
T ss_pred ccCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCCh---HHHHHHHHHH
Confidence 3455678899999999999997654333 34566788888888888774 99999999988766532 2355667777
Q ss_pred HHhCCCCCCceEEEeecC----CcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006836 267 VAELPPDGSTMLRIGMTN----PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 267 ~~~i~~~~~~~iri~~~~----p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (629)
.+ ++ ....+|+++-- |..+++. +.++++..+ .+.++++..++.- ..++..++++.++++
T Consensus 182 ~~-Ip--hV~~IRI~TR~pvv~P~RIT~e---ll~~Lk~~~---~~~v~~h~nhp~E--------it~~a~~Al~~L~~a 244 (417)
T TIGR03820 182 RA-IP--HVEVIRIGTRVPVVLPQRITDE---LVAILKKHH---PVWLNTHFNHPRE--------ITASSKKALAKLADA 244 (417)
T ss_pred hh-cC--CCceEEEeeccccccccccCHH---HHHHHHhcC---CeEEEEeCCChHh--------ChHHHHHHHHHHHHc
Confidence 65 65 67778997432 5555543 445554433 2444555554432 258899999999999
Q ss_pred CCCCEEE--EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccc
Q 006836 343 VPGMQIA--TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (629)
Q Consensus 343 ~pgi~i~--td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~ 394 (629)
|+.+. +-++=| =.++.+.+.+..+-+.++++.--++|..-+-+||.-|+
T Consensus 245 --GI~l~nQsVLLkG-VND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFr 295 (417)
T TIGR03820 245 --GIPLGNQSVLLAG-VNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFR 295 (417)
T ss_pred --CCEEEeeceEECC-cCCCHHHHHHHHHHHHHCCCeeceeeeccCCCCccccc
Confidence 98655 456667 48999999999999999998767778888888886553
No 134
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.71 E-value=1.1e-06 Score=93.77 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=116.2
Q ss_pred eCCCCCCCCCCCccCccCC------CcCCCCHHHHHHHHHHHHH---C---C--------------CcEEEEeecCCCCC
Q 006836 198 INVGCLGACTYCKTKHARG------HLGSYTVESLVGRVRTVIA---D---G--------------VKEVWLSSEDTGAY 251 (629)
Q Consensus 198 isrGCp~~CsFC~ip~~rG------~~Rsr~~e~Iv~Ei~~l~~---~---G--------------vkeI~L~g~d~~~y 251 (629)
+..||+.+|.||..+.... ..+..++++|++++..... . | .+.+.|++ .
T Consensus 64 ~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl-----~ 138 (322)
T PRK13762 64 VVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISL-----S 138 (322)
T ss_pred hhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeC-----C
Confidence 4568999999998765332 1345679999999976532 1 2 23455542 1
Q ss_pred CCCc-CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCC---C
Q 006836 252 GRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE---Y 327 (629)
Q Consensus 252 g~d~-~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~---~ 327 (629)
|... ...|.++++.+.+. +. .+.+. +|.. +.+.+ ..+ . .. ...+.+.+.+.+++..+.+.|+ .
T Consensus 139 GEPlL~p~l~eli~~~k~~----Gi-~~~L~-TNG~-~~e~l---~~L-~-~~-~d~i~VSLda~~~e~~~~i~~~~~~~ 205 (322)
T PRK13762 139 GEPTLYPYLPELIEEFHKR----GF-TTFLV-TNGT-RPDVL---EKL-E-EE-PTQLYVSLDAPDEETYKKINRPVIPD 205 (322)
T ss_pred ccccchhhHHHHHHHHHHc----CC-CEEEE-CCCC-CHHHH---HHH-H-hc-CCEEEEEccCCCHHHHHHHhCCCCCC
Confidence 3332 13578888888653 33 44443 4442 23332 233 2 22 4678899999999999999874 5
Q ss_pred CHHHHHHHHHHHHHhCCCC--EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc
Q 006836 328 TLSDFRTVVDTLIELVPGM--QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (629)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi--~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTp 391 (629)
+.+.+.+.++.+++. +. .+.+.++ ||.+..+..+.++++++++++.+.+.+|++.....
T Consensus 206 ~~~~vl~~L~~l~~~--~~~~~ir~tlv---~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k 266 (322)
T PRK13762 206 AWERILETLELLPSK--KTRTVIRITLV---KGYNMHDPEGFAKLIERANPDFVEVKAYMHVGYSR 266 (322)
T ss_pred cHHHHHHHHHHHHhC--CCCEEEEEEEE---CCcCccHHHHHHHHHHHcCCCEEEEECCeECCCcc
Confidence 889999999999998 54 4444444 55566666689999999999999999999876653
No 135
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.71 E-value=4.3e-07 Score=94.35 Aligned_cols=195 Identities=19% Similarity=0.346 Sum_probs=131.9
Q ss_pred CceEEEEEeC--CCCCCCCCCCccCcc-----------CCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC
Q 006836 190 NKFVEILPIN--VGCLGACTYCKTKHA-----------RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256 (629)
Q Consensus 190 ~~~~a~V~is--rGCp~~CsFC~ip~~-----------rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~ 256 (629)
+...+++.+. .||-.+|+||..... |+.+...+++++++-+..-.. .++.|.+.-. +|++..
T Consensus 27 ~~~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g-~~~rici~~i---~~p~~~- 101 (339)
T COG2516 27 RPTTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLG-NFKRICIQQI---AYPRAL- 101 (339)
T ss_pred ccceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhc-ccccccceee---cccccc-
Confidence 3556777777 899999999975431 112233345555554443222 2345554322 233221
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEe-ecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCC----CCHHH
Q 006836 257 VNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE----YTLSD 331 (629)
Q Consensus 257 ~~l~eLL~~L~~~i~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~----~t~e~ 331 (629)
.++..+++.+...+. ..+.++ .+.+....+.+ ....+.+ ..++.++++..+.++++.+.|. |+++.
T Consensus 102 ~d~~~i~~~~~~~~~----~~itiseci~~~~~~~~l---~e~~klg--~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~ 172 (339)
T COG2516 102 NDLKLILERLHIRLG----DPITISECITAVSLKEEL---EEYRKLG--ADYLGVAEDAANEELFEKVRKTSGSPHSWER 172 (339)
T ss_pred chhhhhhhhhhhccC----CceehhhhhhcccchHHH---HHHHhcc--hhhhhHHHHhcCHHHHHHHHhccCCCCcHHH
Confidence 234556666653221 233333 12333323333 3333333 5788999999999999888543 78999
Q ss_pred HHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCH
Q 006836 332 FRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400 (629)
Q Consensus 332 ~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~ 400 (629)
+.+.++++.++++.-.+.+.+|+|+ |||++++.+++..+.+.+. .++.|.|.|..||.+.+...+|-
T Consensus 173 ~~~~l~~~~~~~~k~rv~ihliVgl-GesD~~~ve~~~~v~~~g~-~v~Lfaf~P~~gt~me~r~~~pv 239 (339)
T COG2516 173 YWEFLEKVAEAFGKGRVGIHLIVGL-GESDKDIVETIKRVRKRGG-IVSLFAFTPLKGTQMENRKPPPV 239 (339)
T ss_pred HHHHHHHHHHHhccCCcceeEEecc-CCchHHHHHHHHHHHhcCc-eEEEEEecccccccccCCCCCcH
Confidence 9999999999999889999999995 9999999999999999985 78999999999999988776664
No 136
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.62 E-value=2.3e-06 Score=89.28 Aligned_cols=175 Identities=18% Similarity=0.286 Sum_probs=124.0
Q ss_pred CCCCCCCCCccCcc----CCCcCCCCHHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCC-cCCCHHHHHHHHHHh
Q 006836 201 GCLGACTYCKTKHA----RGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRD-IGVNLPILLNAIVAE 269 (629)
Q Consensus 201 GCp~~CsFC~ip~~----rG~~Rsr~~e~Iv~Ei~~l~~~------GvkeI~L~g~d~~~yg~d-~~~~l~eLL~~L~~~ 269 (629)
-|.++|.||..... .++....+.+.|.++++.+... ..+.+.|++. |.. +..+|.+|++.+.+.
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~-----GEPTLy~~L~elI~~~k~~ 107 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLS-----GEPTLYPNLGELIEEIKKR 107 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCC-----CCcccccCHHHHHHHHHhc
Confidence 59999999987321 1234456789999999998876 3566666643 332 236899999999874
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCC---CHHHHHHHHHHHHHh-CCC
Q 006836 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY---TLSDFRTVVDTLIEL-VPG 345 (629)
Q Consensus 270 i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~---t~e~~~e~I~~lr~~-~pg 345 (629)
+.....+ .+|... .+. +.++ .. ...+.+.+.+.+.+.+++++|++ .++.+.+.++.+++. -..
T Consensus 108 ----g~~~tfl-vTNgsl-pdv---~~~L-~~---~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~ 174 (296)
T COG0731 108 ----GKKTTFL-VTNGSL-PDV---LEEL-KL---PDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGR 174 (296)
T ss_pred ----CCceEEE-EeCCCh-HHH---HHHh-cc---CCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCc
Confidence 3222222 244432 222 2222 22 56888999999999999999995 678888899999885 334
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccC
Q 006836 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (629)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~ 395 (629)
+.+.+.++=|+ ..+++++++..++++++.++.+.+..|+ +||..-+.+
T Consensus 175 ~vir~tlvkg~-N~~~e~~~~~a~ll~~~~Pd~velk~~~-rpgas~~~l 222 (296)
T COG0731 175 TVIRTTLVKGI-NDDEEELEEYAELLERINPDFVELKTYM-RPGASRYRL 222 (296)
T ss_pred EEEEEEEeccc-cCChHHHHHHHHHHHhcCCCeEEEecCc-cCChHhhcc
Confidence 67788888888 6678889999999999999999999886 445444443
No 137
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=98.36 E-value=8.1e-07 Score=89.07 Aligned_cols=181 Identities=19% Similarity=0.300 Sum_probs=118.2
Q ss_pred CCCCCCCCCCCccCccC--C--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC
Q 006836 199 NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274 (629)
Q Consensus 199 srGCp~~CsFC~ip~~r--G--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~ 274 (629)
+-||.-.|.||....-+ | ..+...+|+|+++++...+.|-..|.+...=-...|+ ...|..+++.|.+.-. .+
T Consensus 91 tGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GR--k~~fk~IlE~ikevr~-Mg 167 (380)
T KOG2900|consen 91 TGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGR--KSAFKRILEMIKEVRD-MG 167 (380)
T ss_pred cCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccc--hhHHHHHHHHHHHHHc-CC
Confidence 56899999999876432 3 2567889999999999999998888765321111222 2456677766655321 11
Q ss_pred -CceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 006836 275 -STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353 (629)
Q Consensus 275 -~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~I 353 (629)
..-+.+++++-.. ..+ ++.+++ ....-.+.+ |-+-...+=-.-+.++-++.|+.++++ ||.+.+.=|
T Consensus 168 mEvCvTLGMv~~qQ-------Ake-LKdAGL-TAYNHNlDT-SREyYskvItTRtYDdRL~Ti~nvr~a--GikvCsGGI 235 (380)
T KOG2900|consen 168 MEVCVTLGMVDQQQ-------AKE-LKDAGL-TAYNHNLDT-SREYYSKVITTRTYDDRLQTIKNVREA--GIKVCSGGI 235 (380)
T ss_pred ceeeeeeccccHHH-------HHH-HHhccc-eecccCccc-hhhhhcccceecchHHHHHHHHHHHHh--cceeccccc
Confidence 1234455544321 112 233332 222222332 222332222234678999999999999 999999999
Q ss_pred EcCCCCCHHHHHHHHHHHHhcC--CCeEEEEeceeCCCCccccC
Q 006836 354 CGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPAARM 395 (629)
Q Consensus 354 vGfPGETeedf~eTl~fl~~l~--~d~v~i~~ysP~PGTpa~~~ 395 (629)
+|+ ||.++|..-.+..+..++ +..+-|+.+.+.+|||+++-
T Consensus 236 lGL-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~ 278 (380)
T KOG2900|consen 236 LGL-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADE 278 (380)
T ss_pred ccc-cccccceeeeeeeeccCCCCCcccccceEEecCCcccchh
Confidence 998 999999877666666664 57889999999999999874
No 138
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=98.32 E-value=5.3e-05 Score=83.13 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=112.2
Q ss_pred CCCCCCccCccCCCcCCCCHHHHHHHHHHHHHC---CCcEEEEeec-CCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEE
Q 006836 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSE-DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279 (629)
Q Consensus 204 ~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~---GvkeI~L~g~-d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~ir 279 (629)
+.|.||......-.-+..++++|+++++..... ....+.|.|. +...| ..+.+|++.+.+. +. .+.
T Consensus 37 ~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~-----~~l~eLl~~lk~~----gi-~ta 106 (404)
T TIGR03278 37 KGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY-----PELEELTKGLSDL----GL-PIH 106 (404)
T ss_pred CCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC-----HHHHHHHHHHHhC----CC-CEE
Confidence 378889654332234677899999999986542 3466777765 44333 3578899888762 22 355
Q ss_pred EeecCCc-chhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 006836 280 IGMTNPP-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (629)
Q Consensus 280 i~~~~p~-~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG 358 (629)
+.+++.. ..... .+.+++... ...+.+.+.|.+++..+.|-..-..+.+++.++++.+. ..+.+..-+| ||
T Consensus 107 I~~TnG~~l~~~e--~~~~L~~~g--ld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~-~~v~~~ivlI---PG 178 (404)
T TIGR03278 107 LGYTSGKGFDDPE--IAEFLIDNG--VREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCES-CEVHAASVII---PG 178 (404)
T ss_pred EeCCCCcccCCHH--HHHHHHHcC--CCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhc-CCEEEEEEEe---CC
Confidence 5444433 22322 234444332 57889999999999998865544558999999999885 2344444555 55
Q ss_pred CCH-HHHHHHHHHHHhcCCCeEEEEeceeCC
Q 006836 359 ETD-EDFNQTVNLIKEYKFPQVHISQFYPRP 388 (629)
Q Consensus 359 ETe-edf~eTl~fl~~l~~d~v~i~~ysP~P 388 (629)
-++ ++..++++++.++++..+++.+|.+.-
T Consensus 179 iND~eel~~ti~~L~~lg~~~V~L~~y~~~g 209 (404)
T TIGR03278 179 VNDGDVLWKTCADLESWGAKALILMRFANTE 209 (404)
T ss_pred ccCcHHHHHHHHHHHHCCCCEEEEEeccccc
Confidence 554 455799999999999999999998643
No 139
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.31 E-value=0.00015 Score=76.97 Aligned_cols=181 Identities=13% Similarity=0.184 Sum_probs=126.0
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCC-CcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~G-vkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~ 269 (629)
+....++++.-|+.+|.||..........-.+.++..+.+..+.+.| ..-+.|.|.+-... .++.++++...+.
T Consensus 18 p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~-----~d~~ei~~~~~~~ 92 (347)
T COG0535 18 PLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLR-----PDLLEIVEYARKK 92 (347)
T ss_pred CcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcccc-----ccHHHHHHHHhhc
Confidence 55667889999999999997665432234556777777777888888 77777777654443 3567777766542
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHH-HHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006836 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV-LSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (629)
Q Consensus 270 i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~v-Lk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (629)
......+. ++...+++.. .+.+...+ ..++.+.+++.+++. ....++....+...+.++.+++. |+.+
T Consensus 93 ----~~~~~~~~-TnG~~~~~~~---~~~l~~~g-~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~--g~~~ 161 (347)
T COG0535 93 ----GGIRVSLS-TNGTLLTEEV---LEKLKEAG-LDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEA--GILV 161 (347)
T ss_pred ----CCeEEEEe-CCCccCCHHH---HHHHHhcC-CcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHc--CCee
Confidence 12233332 4442233322 22223333 689999999999999 55556677889999999999988 8763
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCC
Q 006836 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (629)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PG 389 (629)
.+.+-.+..+.+++.+.++++.+++++...++.+.|...
T Consensus 162 --~~~~~v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g~ 200 (347)
T COG0535 162 --VINTTVTKINYDELPEIADLAAELGVDELNVFPLIPVGR 200 (347)
T ss_pred --eEEEEEecCcHHHHHHHHHHHHHcCCCEEEEEEEeeccc
Confidence 333344578999999999999999998888888877543
No 140
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.29 E-value=1.7e-05 Score=81.65 Aligned_cols=192 Identities=19% Similarity=0.221 Sum_probs=122.8
Q ss_pred eCCCCCCCCCCCccCccCCC-cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-CCCHHHHHHHHHHhCCCCCC
Q 006836 198 INVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGS 275 (629)
Q Consensus 198 isrGCp~~CsFC~ip~~rG~-~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~-~~~l~eLL~~L~~~i~~~~~ 275 (629)
.+.-|-+.|.||+....... ....++++|++---.+++..+-|=.|.+.-+.-. .|. -+.+.+.++.|.-+.. ..
T Consensus 60 lTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~-~DyTmE~mi~var~LRle~~--f~ 136 (404)
T COG4277 60 LTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIKN-PDYTMEEMIEVARILRLEHK--FR 136 (404)
T ss_pred HhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheeccccccC-cchHHHHHHHHHHHHhhccc--cC
Confidence 35569999999987554443 3467899999987777776554433333222221 121 1233444444432111 12
Q ss_pred ceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC------------
Q 006836 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV------------ 343 (629)
Q Consensus 276 ~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~------------ 343 (629)
..|++- +-|..-.+.+ .++. -.+.+++|.+|...+..|+.+-..-+.-++.+...++|..+
T Consensus 137 GYIHlK-~IPgas~~li---~eag---lyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~ 209 (404)
T COG4277 137 GYIHLK-IIPGASPDLI---KEAG---LYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRH 209 (404)
T ss_pred cEEEEE-ecCCCCHHHH---HHHh---hhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhcc
Confidence 234443 2233222222 2211 23678999999999999999987777788888888887721
Q ss_pred -CCC---EEEEEEEEcCCCCCHHHHHHHHHHH-HhcCCCeEEEEeceeCCCCccccCCCCC
Q 006836 344 -PGM---QIATDIICGFPGETDEDFNQTVNLI-KEYKFPQVHISQFYPRPGTPAARMKKVP 399 (629)
Q Consensus 344 -pgi---~i~td~IvGfPGETeedf~eTl~fl-~~l~~d~v~i~~ysP~PGTpa~~~~~v~ 399 (629)
|.+ .-+|-+|+|-.|||++++...-+.+ ..+++.++++..|+|.|+||+.-...+|
T Consensus 210 tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~~~pp 270 (404)
T COG4277 210 TPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPDDKPP 270 (404)
T ss_pred CccccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCCcccCCc
Confidence 333 2457899999999999998776655 5678999999999999999986533444
No 141
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.26 E-value=0.0001 Score=81.38 Aligned_cols=181 Identities=12% Similarity=0.114 Sum_probs=115.5
Q ss_pred ceEEEEE-eCCCCCCCCCCCccCccCC-----CcCCCCHHHHHHHHHHHHHC-CCcE--EEEeecCCCCCCCCcCCCHHH
Q 006836 191 KFVEILP-INVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPI 261 (629)
Q Consensus 191 ~~~a~V~-isrGCp~~CsFC~ip~~rG-----~~Rsr~~e~Iv~Ei~~l~~~-Gvke--I~L~g~d~~~yg~d~~~~l~e 261 (629)
++...++ ++..|+.+|.||......+ ....++.+.+.+-|+.+.+. +... |.|.|.+-+..+.+ .+.+
T Consensus 12 p~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~---~~~~ 88 (412)
T PRK13745 12 PLYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLS---FYKK 88 (412)
T ss_pred ceEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHH---HHHH
Confidence 3555666 4578999999998743211 12346787777777777763 5544 55566555544321 1233
Q ss_pred HHHHHHHhCCCCCCceEEEe-ecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcC----CCCHHHHHHHH
Q 006836 262 LLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDFRTVV 336 (629)
Q Consensus 262 LL~~L~~~i~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R----~~t~e~~~e~I 336 (629)
+++.+.+.. ....+++. .+|...+++.. .+.+...+ + .|.|++.+. +++-...++ ..+.+.+.+.+
T Consensus 89 ~~~~~~~~~---~~~~i~~~i~TNG~ll~~e~---~~~l~~~~-~-~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i 159 (412)
T PRK13745 89 ALELQKKYA---RGRQIDNCIQTNGTLLTDEW---CEFFRENN-F-LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGI 159 (412)
T ss_pred HHHHHHHHc---CCCceEEEEeecCEeCCHHH---HHHHHHcC-e-EEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHH
Confidence 333222211 12234444 25777676644 33444444 3 788888875 555554432 24899999999
Q ss_pred HHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC
Q 006836 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (629)
Q Consensus 337 ~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~ 387 (629)
+.++++ |+.+.+-..+. .++.+...+.++++.++++..+++.++.|.
T Consensus 160 ~~l~~~--gi~~~i~~vv~--~~n~~~~~e~~~~~~~lg~~~~~~~p~~~~ 206 (412)
T PRK13745 160 NLLKKH--GVEWNAMAVVN--DFNADYPLDFYHFFKELDCHYIQFAPIVER 206 (412)
T ss_pred HHHHHc--CCCEEEEEEEc--CCccccHHHHHHHHHHcCCCeEEEEeccCc
Confidence 999998 88776655554 567788899999999999999999988874
No 142
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.26 E-value=4.3e-05 Score=80.65 Aligned_cols=186 Identities=19% Similarity=0.200 Sum_probs=123.7
Q ss_pred EEEEeCCCCCCCCCCCccCccCCCc-CC----CCHHHHHHHHHHHHH-CCC-cEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 006836 194 EILPINVGCLGACTYCKTKHARGHL-GS----YTVESLVGRVRTVIA-DGV-KEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG~~-Rs----r~~e~Iv~Ei~~l~~-~Gv-keI~L~g~d~~~yg~d~~~~l~eLL~~L 266 (629)
-.+..-+||.+.|.||......+.. .+ ...+.+++.++.-.. .+. ...+.+|-++..|.... .-..+.+.+
T Consensus 31 y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E--~~~~ltR~i 108 (297)
T COG1533 31 YTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIE--KEYRLTRKI 108 (297)
T ss_pred eecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcch--HHHHHHHHH
Confidence 3577889999999999887555433 22 234457777776554 333 34455566676776531 112333333
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCC
Q 006836 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPG 345 (629)
Q Consensus 267 ~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~pg 345 (629)
.+.+.. ....+.+. +-.+.+..+++.+.++.... ...+.+.+-+.++++.+.+-.+ -+.++-.++++.+.++ |
T Consensus 109 lei~~~-~~~~v~I~-TKS~lv~RDld~l~~~~~~~--~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~ea--G 182 (297)
T COG1533 109 LEILLK-YGFPVSIV-TKSALVLRDLDLLLELAERG--KVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEA--G 182 (297)
T ss_pred HHHHHH-cCCcEEEE-ECCcchhhhHHHHHhhhhcc--ceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHC--C
Confidence 332210 23556665 33344555665565554433 2467888888888888888665 5889999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC
Q 006836 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (629)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~ 387 (629)
+.+...+-==+|+.|++++++.++.+.+.+...+..+.+.-.
T Consensus 183 i~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~ 224 (297)
T COG1533 183 IPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLR 224 (297)
T ss_pred CeEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEeeeeecc
Confidence 988776655579999999999999999999887666554433
No 143
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.21 E-value=0.00022 Score=77.36 Aligned_cols=174 Identities=17% Similarity=0.217 Sum_probs=107.2
Q ss_pred EEEeCCCCCCCCCCCccCccCC-----CcCCCCHHHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 006836 195 ILPINVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (629)
Q Consensus 195 ~V~isrGCp~~CsFC~ip~~rG-----~~Rsr~~e~Iv~Ei~~l~~~--GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~ 267 (629)
.+.++.+|+.+|.||..+.... .....+.+.+..-++.+.+. +...|.|+|..-+....+ .+.++++.+.
T Consensus 8 ~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~~~---~~~~~~~~~~ 84 (370)
T PRK13758 8 IKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLE---FFEELMELQR 84 (370)
T ss_pred EecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCChH---HHHHHHHHHH
Confidence 3445689999999998764211 11234555555555555553 455788887554443211 1345555554
Q ss_pred HhCCCCCCceEEEe-ecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcC----CCCHHHHHHHHHHHHHh
Q 006836 268 AELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 268 ~~i~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R----~~t~e~~~e~I~~lr~~ 342 (629)
+. .. ....++++ .+|...+++.. .+.+...+ . .+.|.+.+. +++-..+++ +.+.+.+.+.++.+++.
T Consensus 85 ~~-~~-~~~~~~~~i~TNG~ll~~~~---~~~l~~~~-~-~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~ 156 (370)
T PRK13758 85 KH-NY-KNLKIYNSLQTNGTLIDESW---AKFLSENK-F-LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKY 156 (370)
T ss_pred Hh-cc-CCCeEEEEEEecCEecCHHH---HHHHHHcC-c-eEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHHHHHh
Confidence 32 10 11223232 25666666543 23333333 2 788888886 566555553 45889999999999998
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 006836 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (629)
Q Consensus 343 ~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ 383 (629)
++.+..-+++. ..+.+++.+.++++.+++++.+.+..
T Consensus 157 --~~~~~i~~~v~--~~n~~~l~~i~~~~~~~g~~~~~~~~ 193 (370)
T PRK13758 157 --KVEFNILCVVT--SNTARHVNKIYKYFKEKDFKFLQFIN 193 (370)
T ss_pred --CCCceEEEEec--cccccCHHHHHHHHHHcCCCeEeeee
Confidence 77766666665 35678899999999999998877654
No 144
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.18 E-value=6.5e-05 Score=78.97 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcCCC-HHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHH
Q 006836 220 SYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~---~GvkeI~L~g~d~~~yg~d~~~~-l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el 295 (629)
..+.+++++++..... .+...|.|+|.+-+.+ .. +.++++.+.+. + ..+.+. ++.....+. +
T Consensus 105 ~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~-----~~~l~~l~~~~k~~----g-~~~~i~-TnG~~~~~~---~ 170 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQ-----PEFALALLQACHER----G-IHTAVE-TSGFTPWET---I 170 (295)
T ss_pred CCcHHHHHHHHHHHHHhcccCCCcEEeeCcchhch-----HHHHHHHHHHHHHc----C-CcEeee-CCCCCCHHH---H
Confidence 3568888888876432 2345788887554432 22 24666666542 3 233443 333222233 3
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC--EEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 006836 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM--QIATDIICGFPGETDEDFNQTVNLIKE 373 (629)
Q Consensus 296 ~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi--~i~td~IvGfPGETeedf~eTl~fl~~ 373 (629)
.+++.. ...+.+.+.+.+++..+.+.. .+.+.+.+.++.+.+. ++ .+.+-+|-|+ .++.+++.+.++++.+
T Consensus 171 ~~ll~~---~d~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~--~~~~~i~~~~v~~~-n~~~~ei~~l~~~~~~ 243 (295)
T TIGR02494 171 EKVLPY---VDLFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAA--GKNVVIRIPVIPGF-NDSEENIEAIAAFLRK 243 (295)
T ss_pred HHHHhh---CCEEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhC--CCcEEEEeceeCCc-CCCHHHHHHHHHHHHH
Confidence 333322 345678899999988877643 4678899999999998 64 4444456565 5788999999999999
Q ss_pred cC--CCeEEEEeceeCCCCcc
Q 006836 374 YK--FPQVHISQFYPRPGTPA 392 (629)
Q Consensus 374 l~--~d~v~i~~ysP~PGTpa 392 (629)
++ +..+++.+|.|.+..+.
T Consensus 244 ~~~~v~~v~l~~~~~~g~~~~ 264 (295)
T TIGR02494 244 LEPGVDEIDLLPYHRLGENKY 264 (295)
T ss_pred hccCCceEEecCCCchhHHHH
Confidence 98 78999999999877764
No 145
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=98.14 E-value=0.00021 Score=73.16 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=90.6
Q ss_pred EEEEeCCCCCCCCCCCccCccC-----CCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 006836 194 EILPINVGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~r-----G~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~ 268 (629)
.||.++ |||.+|.||..+... +.++..+.+++++++..+...|++.|.|+|.+-..+ ..+.+|++.+.+
T Consensus 25 ~FvR~~-gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~-----~~l~~li~~l~~ 98 (238)
T TIGR03365 25 MFVRTG-GCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPALQ-----KPLGELIDLGKA 98 (238)
T ss_pred EEEEeC-CcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchhhh-----HhHHHHHHHHHH
Confidence 355554 999999999987532 123457999999999988777899999999665544 357888888875
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006836 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (629)
Q Consensus 269 ~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (629)
. + ..+.+. +|.....+. + .. +.++.+.+-..+. +.....+...+.++.+++ +...
T Consensus 99 ~----g-~~v~le-TNGtl~~~~---l----~~---~d~v~vs~K~~~s------g~~~~~~~~~~~ik~l~~---~~~~ 153 (238)
T TIGR03365 99 K----G-YRFALE-TQGSVWQDW---F----RD---LDDLTLSPKPPSS------GMETDWQALDDCIERLDD---GPQT 153 (238)
T ss_pred C----C-CCEEEE-CCCCCcHHH---H----hh---CCEEEEeCCCCCC------CCCCcHHHHHHHHHHhhh---cCce
Confidence 2 2 345554 555433321 1 11 2355565554433 112236666777777765 3556
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 349 ATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
..-|+++ ++.|++...++.....
T Consensus 154 ~vK~Vv~----~~~d~~~a~~~~~~~~ 176 (238)
T TIGR03365 154 SLKVVVF----DDADYAYAKEVHARYP 176 (238)
T ss_pred EEEEEEC----CcccHHHHHHHHHhcC
Confidence 6677777 2333555555555443
No 146
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.09 E-value=0.00024 Score=75.54 Aligned_cols=184 Identities=20% Similarity=0.281 Sum_probs=130.4
Q ss_pred CCceEEEEEeCCCCCCCCCCCccCccCCC-cCCCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 006836 189 RNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (629)
Q Consensus 189 ~~~~~a~V~isrGCp~~CsFC~ip~~rG~-~Rsr~~e~Iv~Ei~~l~~~-GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L 266 (629)
+.+..+.+..+.+|+-.|.||.-..+-|. -..++.+++-.-+..+.+. -+++|.|+|+|-.... | ..|..|+++|
T Consensus 108 rY~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls-~--~~L~~ll~~L 184 (369)
T COG1509 108 RYPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLS-D--KKLEWLLKRL 184 (369)
T ss_pred ecCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCccccC-H--HHHHHHHHHH
Confidence 34567788999999999999987766554 2235888888888888775 6899999998866543 2 4678899998
Q ss_pred HHhCCCCCCceEEEeec----CCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006836 267 VAELPPDGSTMLRIGMT----NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 267 ~~~i~~~~~~~iri~~~----~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (629)
.+ ++ ....+||++- .|.-+++. |.+++.....-.++..=+.+..+ -..+..+++++++++
T Consensus 185 ~~-Ip--Hv~iiRi~TR~pvv~P~RIt~~---L~~~l~~~~~~v~~~tH~NHp~E----------it~e~~~A~~~L~~a 248 (369)
T COG1509 185 RA-IP--HVKIIRIGTRLPVVLPQRITDE---LCEILGKSRKPVWLVTHFNHPNE----------ITPEAREACAKLRDA 248 (369)
T ss_pred hc-CC--ceeEEEeecccceechhhccHH---HHHHHhccCceEEEEcccCChhh----------cCHHHHHHHHHHHHc
Confidence 75 66 7889999963 45555544 44555442211222222333222 124789999999999
Q ss_pred CCCCEEEE--EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccc
Q 006836 343 VPGMQIAT--DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (629)
Q Consensus 343 ~pgi~i~t--d~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~ 394 (629)
|+.+.- =++=|. +++.+.+.+.++-+.+.++.--++|..-+-+|+.-+.
T Consensus 249 --Gv~l~NQsVLLrGV-ND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr 299 (369)
T COG1509 249 --GVPLLNQSVLLRGV-NDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFR 299 (369)
T ss_pred --Cceeecchheeccc-CCCHHHHHHHHHHHHHcCCcceEEeccCccCCcccee
Confidence 987653 355565 8999999999999999988767777888888887554
No 147
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=97.98 E-value=0.00032 Score=76.47 Aligned_cols=199 Identities=12% Similarity=0.101 Sum_probs=124.7
Q ss_pred CCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHC-CCcE--EEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceE
Q 006836 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 278 (629)
Q Consensus 202 Cp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~-Gvke--I~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~i 278 (629)
|+.+|.||..+...-..+.++.+.+.+-++.+.+. +.+. |.+.|..-...|. .+-+.+..+.++.. ...++
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~----~f~~~~~~l~~k~~--~~~~i 91 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGL----DFYRKAVALQQKYA--NGKTI 91 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccchH----HHHHHHHHHHHHHh--cCCee
Confidence 99999999887543323346766666667777664 4455 5555655444443 33444444444443 34566
Q ss_pred EEee-cCCcchhHHHHHHHHHHhCCCcccccccccCCC---CHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE
Q 006836 279 RIGM-TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG---SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354 (629)
Q Consensus 279 ri~~-~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESg---sd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~Iv 354 (629)
..++ +|...+++.. .+.++..++ .|-|.+... +|.....-+-.-|.+.+.+.++.|++. ++.+.+-+.
T Consensus 92 ~~siqTNg~LL~~e~---~e~l~~~~~--~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~--~v~~~~~~v- 163 (378)
T COG0641 92 SNALQTNGTLLNDEW---AEFLAEHDF--LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAH--GVDFNTLTV- 163 (378)
T ss_pred EEEEEEcccccCHHH---HHHHHhcCc--eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHc--CCcEEEEEE-
Confidence 6543 4666666654 455554443 555555432 332222222235899999999999998 888776666
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHH
Q 006836 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE 415 (629)
Q Consensus 355 GfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~ 415 (629)
...++.+...+.++++.+.+...+.+.+..+..++-..... +++.++-.+....+.+.+.
T Consensus 164 -v~~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~ 224 (378)
T COG0641 164 -VNRQNVLHPEEIYHFLKSEGSKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEWV 224 (378)
T ss_pred -EchhHhhCHHHHHHHHHHcccceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999888888666665555421122 5777766666555555544
No 148
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=97.98 E-value=0.00013 Score=76.39 Aligned_cols=188 Identities=14% Similarity=0.136 Sum_probs=127.1
Q ss_pred CCCCHHHHHHHHHHHHHCCC----cEEEEeecCCCCCCCCcCCC-HHHHHHHHHHh----------CCC---CCCceEEE
Q 006836 219 GSYTVESLVGRVRTVIADGV----KEVWLSSEDTGAYGRDIGVN-LPILLNAIVAE----------LPP---DGSTMLRI 280 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~Gv----keI~L~g~d~~~yg~d~~~~-l~eLL~~L~~~----------i~~---~~~~~iri 280 (629)
|.-|.++--..+++|...|. -|+++.|..|.+...+.... +..|-.+|.-. +.. ..-..+.+
T Consensus 148 RYdP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTI 227 (554)
T KOG2535|consen 148 RYDPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITI 227 (554)
T ss_pred hcCHHHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEe
Confidence 34466777778888888764 36777787776654432100 11122221110 000 00112344
Q ss_pred eecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCC
Q 006836 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360 (629)
Q Consensus 281 ~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGET 360 (629)
. ++|++-...- +.+|+..+ |.++.||+||.-+++.+.-|||||+..+-+.+...+++ |..+.+++|-.+|.=.
T Consensus 228 E-TRPDyC~~~H--l~~ML~YG--CTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDa--G~KvV~HMMPdLPNVg 300 (554)
T KOG2535|consen 228 E-TRPDYCLKRH--LSDMLTYG--CTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDA--GFKVVAHMMPDLPNVG 300 (554)
T ss_pred e-cCcccchhhh--HHHHHhcC--CceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhcc--CceeehhhCCCCCCCc
Confidence 3 5787654422 45566554 99999999999999999999999999999999999999 9999999999999854
Q ss_pred -HHHHHHHHHHHHhc--CCCeEEEEeceeCCCCccccCC------CCCHHHHHHHHHHHHHH
Q 006836 361 -DEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMK------KVPSAVVKKRSRELTSV 413 (629)
Q Consensus 361 -eedf~eTl~fl~~l--~~d~v~i~~ysP~PGTpa~~~~------~v~~~~~~~R~~~L~~l 413 (629)
+.|+++..++.+.- +.|-+.+++--...||-+|.++ ..|+...-.-..++.++
T Consensus 301 ~eRDieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILal 362 (554)
T KOG2535|consen 301 MERDIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILAL 362 (554)
T ss_pred hhhhHHHHHHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhh
Confidence 56777777777754 4588889999999999988764 24565544444444444
No 149
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00037 Score=72.37 Aligned_cols=173 Identities=18% Similarity=0.264 Sum_probs=103.1
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHH-HHHHH--CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 006836 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV-RTVIA--DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei-~~l~~--~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~ 269 (629)
..++-...|||++|.||..+.....-+..+.+++..|+ ..... .+...|.++|.+-+.. ..-+.++++...+.
T Consensus 36 ~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~~q----~e~~~~~~~~ake~ 111 (260)
T COG1180 36 IRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPTLQ----AEFALDLLRAAKER 111 (260)
T ss_pred EEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcchhh----HHHHHHHHHHHHHC
Confidence 45667788999999999988655322233444444332 22221 2667888887543322 12345566665542
Q ss_pred CCCCCCceEEEeecCCcchhH-HHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-
Q 006836 270 LPPDGSTMLRIGMTNPPFILE-HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ- 347 (629)
Q Consensus 270 i~~~~~~~iri~~~~p~~i~~-~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~- 347 (629)
| -...+. ++- ++.. .++++... +..+.+-+=..+++..+..- +.+.+.+++.++.+.+. |+.
T Consensus 112 ----G-l~~~l~-TnG-~~~~~~~~~l~~~------~D~v~~DlK~~~~~~y~~~t-g~~~~~vl~~~~~l~~~--g~~v 175 (260)
T COG1180 112 ----G-LHVALD-TNG-FLPPEALEELLPL------LDAVLLDLKAFDDELYRKLT-GADNEPVLENLELLADL--GVHV 175 (260)
T ss_pred ----C-CcEEEE-cCC-CCCHHHHHHHHhh------cCeEEEeeccCChHHHHHHh-CCCcHHHHHHHHHHHcC--CCeE
Confidence 2 223332 222 1222 22223322 45677888889998765554 33448999999999997 654
Q ss_pred -EEEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEecee
Q 006836 348 -IATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYP 386 (629)
Q Consensus 348 -i~td~IvGfPGETeedf~eTl~fl~~l~-~d~v~i~~ysP 386 (629)
+++-+|=|+ ++.++++++.++|+.++. ...+++.+|.|
T Consensus 176 e~r~lviPg~-~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp 215 (260)
T COG1180 176 EIRTLVIPGY-NDDEEEIRELAEFIADLGPEIPIHLLRFHP 215 (260)
T ss_pred EEEEEEECCC-CCCHHHHHHHHHHHHhcCCcccEEEecccc
Confidence 444555444 578999999999999853 33455555443
No 150
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=97.84 E-value=9.3e-05 Score=68.06 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCceeeCC-------------C-CCCCEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEECcccCCCh
Q 006836 76 EYMAGQLSAFGYALTDN-------------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQGSR 139 (629)
Q Consensus 76 e~m~~~L~~~G~~~~~~-------------~-~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VVVgGc~a~~~~ 139 (629)
.++++.|++.|+++... . .++|+|++ ||.+.+. ..+..+++.+|+.+ .+||+||.|++..|
T Consensus 6 ~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~-S~~~~~~--~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p 82 (127)
T cd02068 6 AYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGI-SLMTSAI--YEALELAKIAKEVLPNVIVVVGGPHATFFP 82 (127)
T ss_pred HHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEE-eeccccH--HHHHHHHHHHHHHCCCCEEEECCcchhhCH
Confidence 45666666666553211 2 68999999 5655433 25677777777765 68999999999998
Q ss_pred hh--hcccccE-EEcCCCHHHHHHHHHHHhcCC
Q 006836 140 DL--KELEGVS-IVGVQQIDRVVEVVEETLKGH 169 (629)
Q Consensus 140 e~--~~~~~d~-VvG~~e~~~l~ell~~~~~g~ 169 (629)
+. .....|. +.|+++ ..++++++....|.
T Consensus 83 ~~~~~~~~~D~vv~GEgE-~~~~~l~~~l~~g~ 114 (127)
T cd02068 83 EEILEEPGVDFVVIGEGE-ETFLKLLEELEEGE 114 (127)
T ss_pred HHHhcCCCCCEEEECCcH-HHHHHHHHHHHcCC
Confidence 73 3445687 557765 78999998876663
No 151
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.57 E-value=0.002 Score=69.85 Aligned_cols=169 Identities=12% Similarity=0.128 Sum_probs=119.0
Q ss_pred CCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCc-----EEEEe-ecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEE
Q 006836 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK-----EVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279 (629)
Q Consensus 206 CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~Gvk-----eI~L~-g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~ir 279 (629)
|.||.....--.-...|+..|.+|...- .|+. .+..+ +.|++.| .++.++.+.....+ .+.++|
T Consensus 44 C~~cy~~v~~~~~~~~~~~~v~~e~~~~--lg~~~e~~~~~~~~~~~d~~c~-----p~le~~~~r~~~~~---~d~~~r 113 (414)
T COG1625 44 CDDCYLSVNELDTGFIPPLMVEKEPDED--LGLEFEEVLGAKQCGNGDTFCY-----PDLEPRGRRARLYY---KDDDIR 113 (414)
T ss_pred ccceeeEEecccCCCCCHhHhhcccccc--cccccccccceeecCCCCcccC-----cchhhhhhHHHhhc---CCccce
Confidence 9999775321111456788888887631 2221 22222 2233333 45677777776643 356788
Q ss_pred EeecCCcchh--HHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC
Q 006836 280 IGMTNPPFIL--EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357 (629)
Q Consensus 280 i~~~~p~~i~--~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfP 357 (629)
++++.-..++ ...+ .+... + ...+.+.+.|.++++.++|-|....++.++.++++.++ .+.+.+++++ .|
T Consensus 114 L~~tsG~~~~lt~~~~---~i~~~-g-vdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~--~~~v~a~iVl-~P 185 (414)
T COG1625 114 LSFTSGSGFTLTNRAE---RIIDA-G-VDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAER--CIEVHAQIVL-CP 185 (414)
T ss_pred eeeeeccceeccchHH---HHHHc-C-CCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHh--hhheeeEEEE-cC
Confidence 8887655443 2222 23332 3 68899999999999999999999999999999999999 9999999887 49
Q ss_pred CCC-HHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 358 GET-DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 358 GET-eedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
|=+ -+++.+|++-+.+.+...+.++.+.|.=.|..
T Consensus 186 GvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~ 221 (414)
T COG1625 186 GVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRY 221 (414)
T ss_pred CcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeec
Confidence 988 89999999999999998888887666555543
No 152
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=97.53 E-value=0.00044 Score=62.48 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhC--CCCEEEECcccC
Q 006836 73 SDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQ 136 (629)
Q Consensus 73 ~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VVVgGc~a~ 136 (629)
.-..++++.|++.||++... ..++|+|+|+ |+.+ +....+.++++.+|+. +.+||+||.+++
T Consensus 15 lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS-~~~~-~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t 92 (121)
T PF02310_consen 15 LGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGIS-VSMT-PNLPEAKRLARAIKERNPNIPIVVGGPHAT 92 (121)
T ss_dssp HHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEE-ESSS-THHHHHHHHHHHHHTTCTTSEEEEEESSSG
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEE-ccCc-CcHHHHHHHHHHHHhcCCCCEEEEECCchh
Confidence 35678888888888876421 3589999994 4332 2334567778877766 458999999999
Q ss_pred CChh-hh-c-ccccE-EEcCCCHHHHHHHH
Q 006836 137 GSRD-LK-E-LEGVS-IVGVQQIDRVVEVV 162 (629)
Q Consensus 137 ~~~e-~~-~-~~~d~-VvG~~e~~~l~ell 162 (629)
..|+ .. . ...|+ ++|+++ ..+++++
T Consensus 93 ~~~~~~l~~~~~~D~vv~GegE-~~~~~l~ 121 (121)
T PF02310_consen 93 ADPEEILREYPGIDYVVRGEGE-EAFPELL 121 (121)
T ss_dssp HHHHHHHHHHHTSEEEEEETTS-SHHHH--
T ss_pred cChHHHhccCcCcceecCCChH-HhhcccC
Confidence 9987 33 3 45575 778887 4666653
No 153
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=97.06 E-value=0.039 Score=55.67 Aligned_cols=153 Identities=14% Similarity=0.062 Sum_probs=102.0
Q ss_pred CCCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~---~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el 295 (629)
+..++++|++++..... .+-..|.|+|.+-..+. .-+.++++.+.+. + ....+. ++-..-.+.+
T Consensus 17 ~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~----~fl~~l~~~~k~~----g-i~~~le-TnG~~~~~~~--- 83 (213)
T PRK10076 17 RDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQA----EFATRFLQRLRLW----G-VSCAIE-TAGDAPASKL--- 83 (213)
T ss_pred cccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCH----HHHHHHHHHHHHc----C-CCEEEE-CCCCCCHHHH---
Confidence 34789999999886432 23346888876544431 1235667666542 2 233443 2221112222
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 296 ~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
.+++.. +..+.+-+=+.+++..+..- |.+.+.+++.++.+.+.-..+.+++-+|=|+ .++++++++..+|+.+++
T Consensus 84 ~~l~~~---~D~~l~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~-nd~~e~i~~ia~~l~~l~ 158 (213)
T PRK10076 84 LPLAKL---CDEVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGF-TLSRENMQQALDVLIPLG 158 (213)
T ss_pred HHHHHh---cCEEEEeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHHHcC
Confidence 233321 45666778888888877764 3567899999999999833366788888776 578999999999999999
Q ss_pred CCeEEEEeceeCCC
Q 006836 376 FPQVHISQFYPRPG 389 (629)
Q Consensus 376 ~d~v~i~~ysP~PG 389 (629)
++.+++.+|.|+--
T Consensus 159 ~~~~~llpyh~~g~ 172 (213)
T PRK10076 159 IKQIHLLPFHQYGE 172 (213)
T ss_pred CceEEEecCCccch
Confidence 88999999998633
No 154
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.05 E-value=0.013 Score=64.50 Aligned_cols=109 Identities=14% Similarity=0.207 Sum_probs=80.4
Q ss_pred ccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCH-HHHHHHHHHHHhcC---CCeEE
Q 006836 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD-EDFNQTVNLIKEYK---FPQVH 380 (629)
Q Consensus 305 ~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETe-edf~eTl~fl~~l~---~d~v~ 380 (629)
..-+.+++.+.+++..+.|-+.-..+++.+.++++.++ ||.+++.+++ .||=++ +++++|+..+.+++ ...+.
T Consensus 139 lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~--~I~~h~qiVl-cPGiNDg~~L~~Ti~dL~~~~~~~~P~v~ 215 (433)
T TIGR03279 139 LSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQER--RLQLHAQVVV-CPGINDGKHLERTLRDLAQFHDGDWPTVL 215 (433)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHc--CCeEEEEEEE-cCCcCCHHHHHHHHHHHHhhcccCCCcee
Confidence 56788999999999998887766899999999999999 9999988776 599777 79999999999993 33333
Q ss_pred EEeceeCCCCcc----ccCCCCCHHHHHHHHHHHHHHHHH
Q 006836 381 ISQFYPRPGTPA----ARMKKVPSAVVKKRSRELTSVFEA 416 (629)
Q Consensus 381 i~~ysP~PGTpa----~~~~~v~~~~~~~R~~~L~~l~~~ 416 (629)
--...|.==|.. +.+..+..+..++=.+.+..++++
T Consensus 216 S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~ie~~q~~ 255 (433)
T TIGR03279 216 SVAVVPVGLTRFRPEEDELTPVTPECARRVIAQVEALQTQ 255 (433)
T ss_pred EEEEEccccccCCCCCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 333344433433 223346666666666666666654
No 155
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.91 E-value=0.0099 Score=55.50 Aligned_cols=102 Identities=15% Similarity=0.237 Sum_probs=72.1
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhC
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~ 124 (629)
.++.+-|.|.-.--.=...++..|+..||++++. .++||+|+|+ +......+.+..+++++++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iS--sl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVS--SLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEc--CchhhhHHHHHHHHHHHHhc
Confidence 4777888887555556788999999999998774 5789999994 33344445677788888776
Q ss_pred C---CCEEEECcccCCC-hhhhcccccEEEcCCCHHHHHHHHHH
Q 006836 125 K---KPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEE 164 (629)
Q Consensus 125 ~---~~VVVgGc~a~~~-~e~~~~~~d~VvG~~e~~~l~ell~~ 164 (629)
+ .+|++||-.+... .++.++..|.+++.+. .+.+++..
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt--~~~~i~~~ 122 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGT--PIPESAIF 122 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCC--CHHHHHHH
Confidence 4 4688999776543 2355667788888765 34444443
No 156
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=96.84 E-value=0.015 Score=60.38 Aligned_cols=176 Identities=19% Similarity=0.215 Sum_probs=102.5
Q ss_pred CCCCCCCCCCccCcc--CCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCce
Q 006836 200 VGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277 (629)
Q Consensus 200 rGCp~~CsFC~ip~~--rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~ 277 (629)
.||+++|-||.-.-+ .|.-+-..++++.+-+..+.+.|++.|.|+|.|-+ .+++-+|+.+..........|
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Pt-------p~lp~Ile~l~~~~~~iPvvw 198 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPT-------PHLPFILEALRYASENIPVVW 198 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCC-------CchHHHHHHHHHHhcCCCEEE
Confidence 499999999987533 23345567899988888899999999999985533 345666666654322001222
Q ss_pred EEEeecCCcchhHHHHHHHHHHhCCCcccccccc-cCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEc
Q 006836 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVP-VQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (629)
Q Consensus 278 iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IG-lESgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~pgi~i~td~IvG 355 (629)
-.-+ +.+.+ ..+++. + +.-+.+| +-=|+++--.+.-+ +.-++-..+.+..+.+.+.|+-+.-=+
T Consensus 199 NSnm-----Y~s~E---~l~lL~--g-vVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLV--- 264 (335)
T COG1313 199 NSNM-----YMSEE---TLKLLD--G-VVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLV--- 264 (335)
T ss_pred ecCC-----ccCHH---HHHHhh--c-cceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEe---
Confidence 2222 22222 223332 1 1122222 44577777655544 444566677777777775455555333
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEecee-CCCCccccCC
Q 006836 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYP-RPGTPAARMK 396 (629)
Q Consensus 356 fPGETeedf~eTl~fl~~l~~d~v~i~~ysP-~PGTpa~~~~ 396 (629)
+||.-+.--...++|+.+.-...+.++.+.. +|--.++++|
T Consensus 265 lPghlecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eyp 306 (335)
T COG1313 265 LPGHLECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYP 306 (335)
T ss_pred cCCchhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhch
Confidence 4665554466788999988665555543322 3344555554
No 157
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=96.60 E-value=0.0039 Score=56.46 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhC---CCCEEEECcccCCC
Q 006836 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA---KKPLVVAGCVPQGS 138 (629)
Q Consensus 76 e~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~---~~~VVVgGc~a~~~ 138 (629)
..++..|++.||++... ..++|+|.| ||+..... ...+.+.++++. +.+|++||.+++..
T Consensus 17 ~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~pdiV~i-S~~~~~~~--~~~~~~~~~~~~~p~~~~ivvGG~~~t~~ 93 (125)
T cd02065 17 NIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGL-SALSTTHM--EAMKLVIEALKELGIDIPVVVGGAHPTAD 93 (125)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEE-ecchHhHH--HHHHHHHHHHHhcCCCCeEEEeCCcCCcc
Confidence 45667778888876532 358999999 66655432 233434444332 57899999999999
Q ss_pred hhhhcccccE-EEcCCCHHHHHHHHH
Q 006836 139 RDLKELEGVS-IVGVQQIDRVVEVVE 163 (629)
Q Consensus 139 ~e~~~~~~d~-VvG~~e~~~l~ell~ 163 (629)
|+. ...|. ++|+++. .++++++
T Consensus 94 ~~~--~~~d~~~~Ge~e~-~~~~l~~ 116 (125)
T cd02065 94 PEE--PKVDAVVIGEGEY-AGPALLE 116 (125)
T ss_pred ccc--cccceeeeCCeEE-Eccccch
Confidence 876 34565 7788773 5565543
No 158
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0048 Score=62.18 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=49.5
Q ss_pred EEEEeCCCCCCCCCCCccCccCC-----CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 006836 194 EILPINVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG-----~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~ 268 (629)
.||.++ |||.+|.||..+++.. .+...+.++|+++++.+. .+.+.|.|+|.+-... .++.+|++.+.+
T Consensus 25 vFVR~~-GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP~~~-----~~l~~Ll~~l~~ 97 (212)
T COG0602 25 VFVRFA-GCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGGEPLLQ-----PNLLELLELLKR 97 (212)
T ss_pred EEEEcC-CCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCCcCCCc-----ccHHHHHHHHHh
Confidence 345443 9999999999886643 467788999999999863 2345899999664221 357888888875
No 159
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=96.39 E-value=0.014 Score=52.82 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEECcccCC
Q 006836 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVPQG 137 (629)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~---~~VVVgGc~a~~ 137 (629)
.-.++..|+..||++... ..++|+|+| |++.+.. ...+.++++.+|+.+ .+|++||-+++.
T Consensus 16 ~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~i-S~~~~~~-~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGL-SGLLTTH-MTLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-ecccccc-HHHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 357788888999987552 568999999 6664443 356677777777663 568999999988
Q ss_pred Chh-hhcccccEEEcCCC
Q 006836 138 SRD-LKELEGVSIVGVQQ 154 (629)
Q Consensus 138 ~~e-~~~~~~d~VvG~~e 154 (629)
.++ +.....|.++....
T Consensus 94 ~~~~~~~~G~D~~~~~~~ 111 (119)
T cd02067 94 DFKFLKEIGVDAYFGPAT 111 (119)
T ss_pred hHHHHHHcCCeEEECCHH
Confidence 776 45666788887655
No 160
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=96.34 E-value=0.0087 Score=56.89 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=49.0
Q ss_pred EEEEeCCCCCCCCCCCccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 006836 194 EILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (629)
Q Consensus 194 a~V~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~ 268 (629)
+.+-.-.|||.+|.||..+..... ....+.++++++|+.+. ..+..|.|+|.+ ..+ ..+.+|++.+.+
T Consensus 17 ~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE-l~~-----~~l~~ll~~lk~ 86 (147)
T TIGR02826 17 SLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE-WNR-----EALLSLLKIFKE 86 (147)
T ss_pred EEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh-cCH-----HHHHHHHHHHHH
Confidence 344555699999999998865322 34678999999998865 346789999987 221 346788888765
No 161
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=96.14 E-value=0.017 Score=53.37 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=38.2
Q ss_pred EeCCCCCCCCCCCccCccCCC--cCCCCHHHHHHHH-HHHHHCCCcEEEEeecCCCCC-CCCcCCCHHHHHHHHHHh
Q 006836 197 PINVGCLGACTYCKTKHARGH--LGSYTVESLVGRV-RTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 197 ~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~Ei-~~l~~~GvkeI~L~g~d~~~y-g~d~~~~l~eLL~~L~~~ 269 (629)
..+.||+++|.||..+..... ....+ .+.++++ +.+.+.+...|.|+|.+...+ .. ..+.++++.+.+.
T Consensus 10 ~~t~~Cnl~C~yC~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~---~~l~~i~~~~k~~ 82 (139)
T PF13353_consen 10 LFTNGCNLRCKYCFNSEIWKFKRGKELS-EEIIEEIIEELKNYGIKGIVLTGGEPLLHENY---DELLEILKYIKEK 82 (139)
T ss_dssp EEEC--SB--TT-TTCCCS-TT-SEEC--HHHHHHHCHHHCCCCCCEEEEECSTGGGHHSH---HHHHHHHHHHHHT
T ss_pred EEcCcccccCcCcCCcccCccccccccc-chhhhhhhhHHhcCCceEEEEcCCCeeeeccH---hHHHHHHHHHHHh
Confidence 347789999999987654431 22233 4555554 444467999999998665441 11 3467777777664
No 162
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.90 E-value=0.11 Score=48.89 Aligned_cols=105 Identities=16% Similarity=0.252 Sum_probs=69.1
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhC
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~ 124 (629)
+++-+-|.|--....---.++-.|+..||+++.. ..+||+|.+ ||..+ .....+.++++++++.
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~l-S~~~~-~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILV-SSLYG-HGEIDCRGLREKCIEA 81 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-cCccc-cCHHHHHHHHHHHHhc
Confidence 3454555554444555667888999999998764 568999999 55444 3455677778888776
Q ss_pred ---CCCEEEECcccCC--Ch-----hhhcccccEEEc-CCCHHHHHHHHHHH
Q 006836 125 ---KKPLVVAGCVPQG--SR-----DLKELEGVSIVG-VQQIDRVVEVVEET 165 (629)
Q Consensus 125 ---~~~VVVgGc~a~~--~~-----e~~~~~~d~VvG-~~e~~~l~ell~~~ 165 (629)
+.+|++||-.+.. .+ ++.++..|.|++ ....+.+.+.|...
T Consensus 82 ~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 82 GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred CCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHH
Confidence 4579999976432 22 134555677887 44556666666543
No 163
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=95.74 E-value=0.031 Score=50.34 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=29.4
Q ss_pred eCCCCCCCCCCCccCccC--CCcCCCCHHHHHHHHHHHHHCCC--cEEEEeecCCC
Q 006836 198 INVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIADGV--KEVWLSSEDTG 249 (629)
Q Consensus 198 isrGCp~~CsFC~ip~~r--G~~Rsr~~e~Iv~Ei~~l~~~Gv--keI~L~g~d~~ 249 (629)
++.+|+.+|.||...... ......+.+++.+.++.+...+. ..|.|+|.+-+
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPl 59 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPL 59 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGG
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCc
Confidence 478999999999975432 23566788899898988888766 56999986544
No 164
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=95.71 E-value=0.17 Score=53.52 Aligned_cols=162 Identities=17% Similarity=0.258 Sum_probs=99.1
Q ss_pred EEEeCCCCCCCCCCCccCccC-CC----cC---CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 006836 195 ILPINVGCLGACTYCKTKHAR-GH----LG---SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (629)
Q Consensus 195 ~V~isrGCp~~CsFC~ip~~r-G~----~R---sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L 266 (629)
.|-++-=||.+|-||-+..-+ |+ .. -.+.++|+.|+...-+.| +-++|.|-..- -.+..+.++.+
T Consensus 31 VlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~G---asiTGGdPl~~----ieR~~~~ir~L 103 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALG---ASITGGDPLLE----IERTVEYIRLL 103 (353)
T ss_pred EEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcccc---ccccCCChHHH----HHHHHHHHHHH
Confidence 456677799999999876433 32 11 234678888877765544 45665432110 13456677777
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCc-ccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 006836 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV-YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (629)
Q Consensus 267 ~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~-~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg 345 (629)
.+++. ....+++ |+++...++.. +.+ +..+++ =-++|.+ .... ...+.+.+.+..+++. |
T Consensus 104 K~efG--~~fHiHL-YT~g~~~~~e~--l~~-L~eAGLDEIRfHp~--~~~~---------~~~e~~i~~l~~A~~~--g 164 (353)
T COG2108 104 KDEFG--EDFHIHL-YTTGILATEEA--LKA-LAEAGLDEIRFHPP--RPGS---------KSSEKYIENLKIAKKY--G 164 (353)
T ss_pred HHhhc--cceeEEE-eeccccCCHHH--HHH-HHhCCCCeEEecCC--Cccc---------cccHHHHHHHHHHHHh--C
Confidence 77664 3455555 56665555533 333 333332 1366665 1111 1246788899999999 7
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEec
Q 006836 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384 (629)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~y 384 (629)
+.+...+ =..||+ ++.+.+.++++.+.+++.++++-+
T Consensus 165 ~dvG~Ei-Paipg~-e~~i~e~~~~~~~~~~~FlNiNEL 201 (353)
T COG2108 165 MDVGVEI-PAIPGE-EEAILEFAKALDENGLDFLNINEL 201 (353)
T ss_pred ccceeec-CCCcch-HHHHHHHHHHHHhcccceeeeeee
Confidence 7665443 355665 455778899999999998888754
No 165
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=95.70 E-value=0.049 Score=50.61 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEECccc---
Q 006836 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVP--- 135 (629)
Q Consensus 76 e~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~---~~VVVgGc~a--- 135 (629)
..++..|+++||++++. .++||+|.+++-..+ +...+.+.++.+++.+ .+|++||-.+
T Consensus 17 niv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~--~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~ 94 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGH--GEIDCKGLREKCDEAGLKDILLYVGGNLVVGK 94 (128)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccC--CHHHHHHHHHHHHHCCCCCCeEEEECCCCCCh
Confidence 46788999999999774 568999999654433 3345566666666554 5799999753
Q ss_pred CCCh----hhhcccccEEEcCCCHHHHHHHHHH
Q 006836 136 QGSR----DLKELEGVSIVGVQQIDRVVEVVEE 164 (629)
Q Consensus 136 ~~~~----e~~~~~~d~VvG~~e~~~l~ell~~ 164 (629)
+..+ ++.++..|.++|.+. .+.+++++
T Consensus 95 ~d~~~~~~~L~~~Gv~~vf~pgt--~~~~i~~~ 125 (128)
T cd02072 95 QDFEDVEKRFKEMGFDRVFAPGT--PPEEAIAD 125 (128)
T ss_pred hhhHHHHHHHHHcCCCEEECcCC--CHHHHHHH
Confidence 2222 245666788999876 44555544
No 166
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.52 E-value=0.67 Score=47.52 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=100.8
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
...++.++.++-++.+.+.|+..|.+.+......- .......++++.+.+..+ ..++..+.+.. . +.+..
T Consensus 13 ~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~-----~~~~~~l~~~~-~---~~i~~ 82 (265)
T cd03174 13 GATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVP-----NVKLQALVRNR-E---KGIER 82 (265)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccC-----CcEEEEEccCc-h---hhHHH
Confidence 45679999999999999999999999875433111 111355778888876432 22332122211 1 12333
Q ss_pred HHhCCCcccccccccCCCCH-HHHHhhcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-CCCHHHHHHHHHHHHh
Q 006836 298 VLRHPCVYSFLHVPVQSGSD-AVLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFP-GETDEDFNQTVNLIKE 373 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd-~vLk~M~R~~--t~e~~~e~I~~lr~~~pgi~i~td~IvGfP-GETeedf~eTl~fl~~ 373 (629)
+.+. + ...+++.+ ++|+ ......+|+. ..+...+.++.+++. |+.+..+++.-+. ..+.+.+.+.++.+.+
T Consensus 83 a~~~-g-~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (265)
T cd03174 83 ALEA-G-VDEVRIFD-SASETHSRKNLNKSREEDLENAEEAIEAAKEA--GLEVEGSLEDAFGCKTDPEYVLEVAKALEE 157 (265)
T ss_pred HHhC-C-cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 3333 2 57788888 4444 3334445553 678899999999999 9999988876553 4899999999999999
Q ss_pred cCCCeEEEE
Q 006836 374 YKFPQVHIS 382 (629)
Q Consensus 374 l~~d~v~i~ 382 (629)
++.+.+.+.
T Consensus 158 ~g~~~i~l~ 166 (265)
T cd03174 158 AGADEISLK 166 (265)
T ss_pred cCCCEEEec
Confidence 999877753
No 167
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=95.46 E-value=0.11 Score=48.59 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEECcc--c
Q 006836 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCV--P 135 (629)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~---~~VVVgGc~--a 135 (629)
-..++..|+++||++++. .++||+|.+++-.. .+...+.+.++++++.| ++|++||-. +
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~--~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~ 95 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYG--HGEIDCKGLRQKCDEAGLEGILLYVGGNLVVG 95 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccc--cCHHHHHHHHHHHHHCCCCCCEEEecCCcCcC
Confidence 367888999999999874 57899999976543 33445667777777765 467899953 3
Q ss_pred CCC-h----hhhcccccEEEcCCC-HHHHHHHHHH
Q 006836 136 QGS-R----DLKELEGVSIVGVQQ-IDRVVEVVEE 164 (629)
Q Consensus 136 ~~~-~----e~~~~~~d~VvG~~e-~~~l~ell~~ 164 (629)
... + ++.++..|.|+|.+. .+.+.+.|..
T Consensus 96 ~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 96 KQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred hhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHH
Confidence 322 2 145566788887654 3455555543
No 168
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=95.06 E-value=0.72 Score=44.80 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=90.1
Q ss_pred CCCCCCCCCCCccCccCC-----CcCCCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 006836 199 NVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (629)
Q Consensus 199 srGCp~~CsFC~ip~~rG-----~~Rsr~~e~Iv~Ei~~l~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~ 272 (629)
.-||+..|.||-. +.+. .....+|++|.+.+..+.+ .|..-+.+.|..-. .++ +.+.++++-+ .
T Consensus 48 ~VGCnl~CayCw~-y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~-l~~---EHvlevIeLl----~- 117 (228)
T COG5014 48 TVGCNLLCAYCWN-YFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEPI-LGR---EHVLEVIELL----V- 117 (228)
T ss_pred ccccceeeHHhhh-hhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCcc-ccH---HHHHHHHHhc----c-
Confidence 5699999999976 2221 2345679999998877765 59888888875432 232 2233333332 1
Q ss_pred CCCceEEEeecCCcch--hHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcC-C-CCHHHHHHHHHHHHHhCCCCEE
Q 006836 273 DGSTMLRIGMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-E-YTLSDFRTVVDTLIELVPGMQI 348 (629)
Q Consensus 273 ~~~~~iri~~~~p~~i--~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R-~-~t~e~~~e~I~~lr~~~pgi~i 348 (629)
...+-+. +|-..+ +..+ ..++..+.++ .+.+.+--.+++...++.- . --..--+++++.+.+. |+.+
T Consensus 118 --~~tFvlE-TNG~~~g~drsl--v~el~nr~nv--~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~--g~rf 188 (228)
T COG5014 118 --NNTFVLE-TNGLMFGFDRSL--VDELVNRLNV--LVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGK--GHRF 188 (228)
T ss_pred --CceEEEE-eCCeEEecCHHH--HHHHhcCCce--EEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhc--Ccee
Confidence 1122222 333222 3332 2233444543 6667888889988877642 1 1144556777777777 8888
Q ss_pred EEEEEEcCCCCCHHHHH-HHHHHHHhcC
Q 006836 349 ATDIICGFPGETDEDFN-QTVNLIKEYK 375 (629)
Q Consensus 349 ~td~IvGfPGETeedf~-eTl~fl~~l~ 375 (629)
..-++.+|- .||.. +....+-+++
T Consensus 189 ~pA~~~~f~---~Ed~~k~Lak~Lgehp 213 (228)
T COG5014 189 WPAVVYDFF---REDGLKELAKRLGEHP 213 (228)
T ss_pred eehhhhccc---hhhhHHHHHHHhccCC
Confidence 888999883 33333 3444454443
No 169
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=94.70 E-value=0.34 Score=45.75 Aligned_cols=104 Identities=18% Similarity=0.346 Sum_probs=71.2
Q ss_pred CCceEEEEecCcccChhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHh
Q 006836 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCK 122 (629)
Q Consensus 57 ~~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k 122 (629)
...+|-+-++|=----.=...++..|++.||++... .+++|+|+|+ +.......-+-.+++.++
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvS--sl~g~h~~l~~~lve~lr 88 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVS--SLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEE--eccchHHHHHHHHHHHHH
Confidence 356788888883222334678999999999998764 5789999994 343444555667778888
Q ss_pred hCCC---CEEEECcccCCCh-hhhcccccEEEcCCCHHHHHHHHHH
Q 006836 123 SAKK---PLVVAGCVPQGSR-DLKELEGVSIVGVQQIDRVVEVVEE 164 (629)
Q Consensus 123 ~~~~---~VVVgGc~a~~~~-e~~~~~~d~VvG~~e~~~l~ell~~ 164 (629)
+.|. .|++||-.|.... +++++..|.+++.+- .+.+.+.+
T Consensus 89 e~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt--~~~~~~~~ 132 (143)
T COG2185 89 EAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGT--PIEEALSD 132 (143)
T ss_pred HhCCcceEEeecCccCchhHHHHHHhCcceeeCCCC--CHHHHHHH
Confidence 8874 4688998877653 466666788887754 34444443
No 170
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.39 E-value=0.24 Score=45.36 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEECcccCCC
Q 006836 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVPQGS 138 (629)
Q Consensus 76 e~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~---~~VVVgGc~a~~~ 138 (629)
-.++..|+..||+++.. ..+||+|+| |++- ......+.++++.+++.+ .+|++||-.+...
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~i-S~~~-~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~ 94 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGL-SSLS-GGHMTLFPEVIELLRELGAGDILVVGGGIIPPED 94 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-cccc-hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHH
Confidence 45666788899987653 568999999 4443 345567788888888774 4688998544322
Q ss_pred h-hhhcccccEEEcCCC
Q 006836 139 R-DLKELEGVSIVGVQQ 154 (629)
Q Consensus 139 ~-e~~~~~~d~VvG~~e 154 (629)
. .+.+...|.+++.+.
T Consensus 95 ~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 95 YELLKEMGVAEIFGPGT 111 (122)
T ss_pred HHHHHHCCCCEEECCCC
Confidence 2 234556788887765
No 171
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=94.17 E-value=0.12 Score=49.43 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCccCccCC--CcCCCC---HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 006836 199 NVGCLGACTYCKTKHARG--HLGSYT---VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 199 srGCp~~CsFC~ip~~rG--~~Rsr~---~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~ 269 (629)
..|||.+|.||..|.... .-...+ +++|++++.... .+..|.|+|.+-..... ...+.++++.+.+.
T Consensus 22 ~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~--~~~gVt~sGGEPllq~~--~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNP--LIDGLTLSGGDPLYPRN--VEELIELVKKIKAE 93 (154)
T ss_pred ECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcC--CcCeEEEeChhhCCCCC--HHHHHHHHHHHHHh
Confidence 369999999999886532 124567 555555554331 35679999876554310 02466777777654
No 172
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.67 E-value=2.4 Score=46.00 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=91.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~--~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el 295 (629)
-...|.++-++-++.|.+.|++.|-.... ...+.. ..+..++++.+.. .. + . ++..+.| ..+ ++
T Consensus 62 g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~---vspk~vPqmad~~ev~~~i~~-~~--~-~--~~~~l~~--n~~---di 127 (347)
T PLN02746 62 KNIVPTSVKVELIQRLVSSGLPVVEATSF---VSPKWVPQLADAKDVMAAVRN-LE--G-A--RFPVLTP--NLK---GF 127 (347)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCC---cCcccccccccHHHHHHHHHh-cc--C-C--ceeEEcC--CHH---HH
Confidence 45789999999999999999999987531 111100 0133566777754 32 2 1 2222223 122 23
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHh-hcCC--CCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCC---HHHHHHH
Q 006836 296 AEVLRHPCVYSFLHVPVQSGSDAVLSA-MNRE--YTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGET---DEDFNQT 367 (629)
Q Consensus 296 ~~l~~~~~~~~~l~IGlESgsd~vLk~-M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~--IvGfPGET---eedf~eT 367 (629)
...+..+ ...+++.+ |.|+.-+++ +++. ...+.+.++++.++++ |+.+..+| .+|.|.++ .+.+.+.
T Consensus 128 e~A~~~g--~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~--Gl~v~~~is~~fg~p~~~r~~~~~l~~~ 202 (347)
T PLN02746 128 EAAIAAG--AKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKH--SIPVRGYVSCVVGCPIEGPVPPSKVAYV 202 (347)
T ss_pred HHHHHcC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEeeecCCccCCCCHHHHHHH
Confidence 3333332 67888888 888876644 4443 3455666899999999 98888766 68888774 4556666
Q ss_pred HHHHHhcCCCeEEE
Q 006836 368 VNLIKEYKFPQVHI 381 (629)
Q Consensus 368 l~fl~~l~~d~v~i 381 (629)
++.+.+.+.+.+.+
T Consensus 203 ~~~~~~~Gad~I~l 216 (347)
T PLN02746 203 AKELYDMGCYEISL 216 (347)
T ss_pred HHHHHHcCCCEEEe
Confidence 66677778887654
No 173
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=92.57 E-value=1.1 Score=53.23 Aligned_cols=103 Identities=15% Similarity=0.261 Sum_probs=71.0
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhh
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (629)
.++|.+-|+|--.-..=...+...|+..||++... .++||+|+| |+-.....+.+..+++.+|+
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~a~ivvl--cs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGV--SSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcCCCEEEE--eccchhhHHHHHHHHHHHHh
Confidence 46899999999754555678899999999998543 268999999 44443344567778888888
Q ss_pred CCC---CEEEECcccCCCh-hhhcccccEEEcCCCHHHHHHHHHH
Q 006836 124 AKK---PLVVAGCVPQGSR-DLKELEGVSIVGVQQIDRVVEVVEE 164 (629)
Q Consensus 124 ~~~---~VVVgGc~a~~~~-e~~~~~~d~VvG~~e~~~l~ell~~ 164 (629)
.|. +|++||-.+.... .+.+...|.++..+. .+.++|+.
T Consensus 660 ~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~--d~~~~L~~ 702 (714)
T PRK09426 660 LGREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGT--VIADAAID 702 (714)
T ss_pred cCCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCC--CHHHHHHH
Confidence 764 5788887544332 245666787776654 34444443
No 174
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.03 E-value=4.6 Score=42.69 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=90.4
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
-...+.++.++-++.|.+.|++.|-+.+-....+-... .+-.+.++.|.+ .+ + .. +..+.+. .. .+..
T Consensus 20 ~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~-~d~~e~~~~l~~-~~--~-~~--~~~l~~~--~~---~ie~ 87 (287)
T PRK05692 20 KRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQM-ADAAEVMAGIQR-RP--G-VT--YAALTPN--LK---GLEA 87 (287)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCccccccc-ccHHHHHHhhhc-cC--C-Ce--EEEEecC--HH---HHHH
Confidence 35688999999999999999999987521100000100 123566666643 22 2 22 2223331 22 2333
Q ss_pred HHhCCCcccccccccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEE--cCCCC---CHHHHHHHHH
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIIC--GFPGE---TDEDFNQTVN 369 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~Iv--GfPGE---Teedf~eTl~ 369 (629)
.++.+ ...+++.+ |.|+..+ +.+++. ...+.+.++++.++++ |+.+...+.. |.|.+ +++.+.+.++
T Consensus 88 A~~~g--~~~v~i~~-~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~--g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
T PRK05692 88 ALAAG--ADEVAVFA-SASEAFSQKNINCSIAESLERFEPVAEAAKQA--GVRVRGYVSCVLGCPYEGEVPPEAVADVAE 162 (287)
T ss_pred HHHcC--CCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 33332 46677765 5555533 455554 2455688899999999 9888777664 65766 6788888888
Q ss_pred HHHhcCCCeEEE
Q 006836 370 LIKEYKFPQVHI 381 (629)
Q Consensus 370 fl~~l~~d~v~i 381 (629)
.+.+.+.+.+.+
T Consensus 163 ~~~~~G~d~i~l 174 (287)
T PRK05692 163 RLFALGCYEISL 174 (287)
T ss_pred HHHHcCCcEEEe
Confidence 888999887664
No 175
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=91.61 E-value=0.5 Score=47.06 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC----CCEEEECcccC
Q 006836 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCVPQ 136 (629)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~----~~VVVgGc~a~ 136 (629)
...++..|+..||++++. ..+||+|.+ ||+.+.. ...+.++++.+|+.+ .+|++||...+
T Consensus 99 ~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~l-S~~~~~~-~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~ 176 (201)
T cd02070 99 KNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGL-SALMTTT-MGGMKEVIEALKEAGLRDKVKVMVGGAPVN 176 (201)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-ecccccc-HHHHHHHHHHHHHCCCCcCCeEEEECCcCC
Confidence 577888999999998753 568999999 6665544 345777777777664 47999998765
Q ss_pred CChhh-hcccccEEE
Q 006836 137 GSRDL-KELEGVSIV 150 (629)
Q Consensus 137 ~~~e~-~~~~~d~Vv 150 (629)
. +. ..+..|...
T Consensus 177 ~--~~~~~~GaD~~~ 189 (201)
T cd02070 177 Q--EFADEIGADGYA 189 (201)
T ss_pred H--HHHHHcCCcEEE
Confidence 3 33 344445443
No 176
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=91.28 E-value=0.64 Score=48.01 Aligned_cols=185 Identities=16% Similarity=0.280 Sum_probs=116.3
Q ss_pred EEEeCCCCCCCCCCCccCccCC---CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 195 ILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 195 ~V~isrGCp~~CsFC~ip~~rG---~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
-+..+.-|+.+|.||.....+. +-+....++++.-+..++.+|+..+.|++.+-... .|. .+....+.. ++
T Consensus 14 rislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr-~di----~~i~~g~~~-l~ 87 (323)
T KOG2876|consen 14 RISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIR-QDI----VPIVAGLSS-LP 87 (323)
T ss_pred hhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCccc-ccc----cchhhhhhc-cc
Confidence 3456788999999998765331 24556678888888888889999999998765443 332 334444432 33
Q ss_pred CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh--CCCCEEE
Q 006836 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL--VPGMQIA 349 (629)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~--~pgi~i~ 349 (629)
+...+.+.. +--.+...+ .. +.+.+ ...+.+.+.+....-...+-|+.+...+...++.+.+. .| ..+.
T Consensus 88 --gLks~~ITt-ng~vl~R~l---p~-lhkag-lssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~p-vkvn 158 (323)
T KOG2876|consen 88 --GLKSIGITT-NGLVLARLL---PQ-LHKAG-LSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNP-VKVN 158 (323)
T ss_pred --chhhhceec-cchhhhhhh---hH-HHhhc-ccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCC-ccee
Confidence 444444432 111112222 22 22233 57888888888888888888888889999999988865 34 5666
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH--hcCCCeEEEEeceeCCCCccccCCCCCH
Q 006836 350 TDIICGFPGETDEDFNQTVNLIK--EYKFPQVHISQFYPRPGTPAARMKKVPS 400 (629)
Q Consensus 350 td~IvGfPGETeedf~eTl~fl~--~l~~d~v~i~~ysP~PGTpa~~~~~v~~ 400 (629)
.-++=|+-+.. ..||+. +.++-.+.+-.|+|+-|.....-.-+|-
T Consensus 159 ~v~~k~~n~~e------v~Dfv~~tr~~p~DVrfIe~mpf~gn~~~t~~lIpy 205 (323)
T KOG2876|consen 159 CVVMKGLNEDE------VFDFVLLTRMRPLDVRFIEFMPFDGNKWNTKSLIPY 205 (323)
T ss_pred eEEEeccCCCc------ccceeeecCCCCcceEEEEecccCCCcccccccccH
Confidence 67777774432 233333 2334456777899998876433224553
No 177
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=90.62 E-value=1.3 Score=42.40 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=35.9
Q ss_pred CCCCCCCCCCccCccCCC--cCCCC---HHHHHHHHHHHHHCCC--cEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 006836 200 VGCLGACTYCKTKHARGH--LGSYT---VESLVGRVRTVIADGV--KEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (629)
Q Consensus 200 rGCp~~CsFC~ip~~rG~--~Rsr~---~e~Iv~Ei~~l~~~Gv--keI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i 270 (629)
.|||++|.||..+..... -...+ .++|++++. ..+. ..|.|+|.+-... .. ...+.++++.+.+..
T Consensus 24 ~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~---~~~~~~~gvt~sGGEPl~~-~~-~~~l~~l~~~~k~~~ 96 (154)
T PRK11121 24 SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLN---DTRIKRQGLSLSGGDPLHP-QN-VPDILKLVQRVKAEC 96 (154)
T ss_pred CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHH---HhCCCCCcEEEECCCccch-hh-HHHHHHHHHHHHHHC
Confidence 799999999988764321 11123 344444433 2333 5688888654321 10 023556666665544
No 178
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=90.58 E-value=12 Score=39.01 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=91.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
-...+.++.++-++.|.+.|++.|-+.. +... ....+.++.+.. .. ....+ .....+. .+. +..
T Consensus 16 ~~~~s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~-~~--~~~~v-~~~~r~~--~~d---i~~ 79 (262)
T cd07948 16 NAFFDTEDKIEIAKALDAFGVDYIELTS---PAAS----PQSRADCEAIAK-LG--LKAKI-LTHIRCH--MDD---ARI 79 (262)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHh-CC--CCCcE-EEEecCC--HHH---HHH
Confidence 4678999999999999999999999864 2222 234555566643 22 11222 2223332 122 222
Q ss_pred HHhCCCcccccccccCCCCHHHHHh-hcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSA-MNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~-M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
.... + ...+++.+ +.|+.-++. +++. ...+.+.+.++.+++. |+.+..++.-.| +-+.+.+.+.++.+.++
T Consensus 80 a~~~-g-~~~i~i~~-~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~--G~~v~~~~eda~-r~~~~~l~~~~~~~~~~ 153 (262)
T cd07948 80 AVET-G-VDGVDLVF-GTSPFLREASHGKSITEIIESAVEVIEFVKSK--GIEVRFSSEDSF-RSDLVDLLRVYRAVDKL 153 (262)
T ss_pred HHHc-C-cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeeC-CCCHHHHHHHHHHHHHc
Confidence 3332 2 56677666 667765543 3433 3456677888999999 999988887666 33578888899999999
Q ss_pred CCCeEEE
Q 006836 375 KFPQVHI 381 (629)
Q Consensus 375 ~~d~v~i 381 (629)
+.+.+.+
T Consensus 154 g~~~i~l 160 (262)
T cd07948 154 GVNRVGI 160 (262)
T ss_pred CCCEEEE
Confidence 9886553
No 179
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=90.53 E-value=9.5 Score=39.97 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=88.5
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
..+.+.++-++-++.|.+.|++.|-+..--...+.+-. .+..++++.+.. . . ..++..+.+. .+ .+..
T Consensus 14 ~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~-~d~~~~~~~l~~-~---~--~~~~~~~~~~--~~---dv~~ 81 (274)
T cd07938 14 KTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQM-ADAEEVLAGLPR-R---P--GVRYSALVPN--LR---GAER 81 (274)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccc-CCHHHHHhhccc-C---C--CCEEEEECCC--HH---HHHH
Confidence 46789999999999999999999988621000000000 123344444432 1 1 2233322231 12 2333
Q ss_pred HHhCCCcccccccccCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EcCCCC---CHHHHHHHHHH
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTVNL 370 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~I--vGfPGE---Teedf~eTl~f 370 (629)
.++.+ ...+++.+-+.+....+.+++. ...+...+.++.+++. |+.+...+. +|.|.+ +.+.+.+.++.
T Consensus 82 A~~~g--~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~--G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~ 157 (274)
T cd07938 82 ALAAG--VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAA--GLRVRGYVSTAFGCPYEGEVPPERVAEVAER 157 (274)
T ss_pred HHHcC--cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeEecCCCCCCCCHHHHHHHHHH
Confidence 33332 5677777644433344666665 4567788889999999 988777666 565655 45666777777
Q ss_pred HHhcCCCeEEE
Q 006836 371 IKEYKFPQVHI 381 (629)
Q Consensus 371 l~~l~~d~v~i 381 (629)
+.+.+.+.+.+
T Consensus 158 ~~~~Ga~~i~l 168 (274)
T cd07938 158 LLDLGCDEISL 168 (274)
T ss_pred HHHcCCCEEEE
Confidence 88888876654
No 180
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=88.62 E-value=15 Score=37.92 Aligned_cols=140 Identities=18% Similarity=0.201 Sum_probs=87.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeec-CCcchhHHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-NPPFILEHLKEIAE 297 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~-~p~~i~~~l~el~~ 297 (629)
...+.++.++-++.|.+.|++.|.+. +...+. .-.+.++.+.+... + .++... ++. .+. +..
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g---~p~~~~----~~~e~~~~l~~~~~--~---~~~~~~~r~~--~~~---v~~ 77 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVG---IPAMGE----EEREAIRAIVALGL--P---ARLIVWCRAV--KED---IEA 77 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---cCCCCH----HHHHHHHHHHhcCC--C---CEEEEeccCC--HHH---HHH
Confidence 46799999999999999999999885 222222 12367777765322 2 222222 221 122 222
Q ss_pred HHhCCCcccccccccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
.... + ...+++.+ |.|+.-+ +.+|+. ...+.+.+.++.+++. |+.+...++... .-+++.+.+.++.+.+.
T Consensus 78 a~~~-g-~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~ 151 (259)
T cd07939 78 ALRC-G-VTAVHISI-PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDR--GLFVSVGAEDAS-RADPDFLIEFAEVAQEA 151 (259)
T ss_pred HHhC-C-cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEeeccCC-CCCHHHHHHHHHHHHHC
Confidence 2222 2 56777777 6666544 566653 3456677899999999 887765554443 23577888888888888
Q ss_pred CCCeEEE
Q 006836 375 KFPQVHI 381 (629)
Q Consensus 375 ~~d~v~i 381 (629)
+.+.+.+
T Consensus 152 G~~~i~l 158 (259)
T cd07939 152 GADRLRF 158 (259)
T ss_pred CCCEEEe
Confidence 8886554
No 181
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=88.18 E-value=1.2 Score=44.39 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC----CCEEEECccc
Q 006836 74 DSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCVP 135 (629)
Q Consensus 74 dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~----~~VVVgGc~a 135 (629)
---.++..|+..||++++- ..+||+|.+ ||+.+... ..+.++++.+++.+ .+|++||-..
T Consensus 100 G~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~l-S~~~~~~~-~~~~~~i~~l~~~~~~~~v~i~vGG~~~ 177 (197)
T TIGR02370 100 GKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTG-SALMTTTM-YGQKDINDKLKEEGYRDSVKFMVGGAPV 177 (197)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE-ccccccCH-HHHHHHHHHHHHcCCCCCCEEEEEChhc
Confidence 3466778899999999753 578999999 66766543 45778888887773 4799999654
Q ss_pred CCChhh-hcccccE
Q 006836 136 QGSRDL-KELEGVS 148 (629)
Q Consensus 136 ~~~~e~-~~~~~d~ 148 (629)
.+++ ..+..|.
T Consensus 178 --~~~~~~~~gad~ 189 (197)
T TIGR02370 178 --TQDWADKIGADV 189 (197)
T ss_pred --CHHHHHHhCCcE
Confidence 3554 3444443
No 182
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=85.76 E-value=26 Score=38.43 Aligned_cols=141 Identities=15% Similarity=0.093 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (629)
...+.++.++-++.|.+.|++.|-+. +...+.+ -.+.++.+.+. +. ..++...... ..+. +...
T Consensus 21 ~~~s~e~k~~ia~~L~~~GV~~IE~G---~p~~~~~----~~e~i~~i~~~----~~-~~~i~~~~r~-~~~d---i~~a 84 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAG---FPAVSED----EKEAIKAIAKL----GL-NASILALNRA-VKSD---IDAS 84 (378)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEe---CCCcChH----HHHHHHHHHhc----CC-CeEEEEEccc-CHHH---HHHH
Confidence 46899999999999999999999874 3333321 23567777652 11 2233322221 1222 2333
Q ss_pred HhCCCcccccccccCCCCHH-HHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 299 LRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgsd~-vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
... + ...+++.+ +.|+. +...+++. ...+.+.+.++.+++. |+.+..++.-+. --+.+.+.+.++.+.+.+
T Consensus 85 ~~~-g-~~~i~i~~-~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~--G~~v~~~~ed~~-r~~~~~l~~~~~~~~~~G 158 (378)
T PRK11858 85 IDC-G-VDAVHIFI-ATSDIHIKHKLKKTREEVLERMVEAVEYAKDH--GLYVSFSAEDAS-RTDLDFLIEFAKAAEEAG 158 (378)
T ss_pred HhC-C-cCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeccCC-CCCHHHHHHHHHHHHhCC
Confidence 332 2 56788877 45554 44556653 3456667788899998 888776655443 345777788888888888
Q ss_pred CCeEEE
Q 006836 376 FPQVHI 381 (629)
Q Consensus 376 ~d~v~i 381 (629)
.+.+.+
T Consensus 159 a~~I~l 164 (378)
T PRK11858 159 ADRVRF 164 (378)
T ss_pred CCEEEE
Confidence 887654
No 183
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=85.71 E-value=37 Score=36.69 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=97.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEee-----cCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSS-----EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g-----~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~ 293 (629)
...+.+++++-++.|.+.|+..|-+.- ...+.||..... -.+.++++.+..+ ...+.. ++.|..-.. +
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~-~~e~i~~~~~~~~---~~~~~~-ll~pg~~~~--~ 91 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHT-DLEYIEAAADVVK---RAKVAV-LLLPGIGTV--H 91 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCC-hHHHHHHHHHhCC---CCEEEE-EeccCccCH--H
Confidence 357899999999999999999988861 112233332212 2466677766543 223322 234421111 2
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 006836 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (629)
Q Consensus 294 el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~ 373 (629)
.+......+ ...+.+.. +.+ ..+...+.++.+++. |..+...++..+ .-+++.+.+.++.+.+
T Consensus 92 dl~~a~~~g--vd~iri~~-~~~-----------e~d~~~~~i~~ak~~--G~~v~~~l~~s~-~~~~e~l~~~a~~~~~ 154 (333)
T TIGR03217 92 DLKAAYDAG--ARTVRVAT-HCT-----------EADVSEQHIGMAREL--GMDTVGFLMMSH-MTPPEKLAEQAKLMES 154 (333)
T ss_pred HHHHHHHCC--CCEEEEEe-ccc-----------hHHHHHHHHHHHHHc--CCeEEEEEEccc-CCCHHHHHHHHHHHHh
Confidence 233333332 45566554 222 234678899999999 999888888775 5688999999999999
Q ss_pred cCCCeEEEEeceeCCCCccccCCCCCHHHHHHHHHHHH
Q 006836 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411 (629)
Q Consensus 374 l~~d~v~i~~ysP~PGTpa~~~~~v~~~~~~~R~~~L~ 411 (629)
++.+.+.+- .|-= ...++...++...+.
T Consensus 155 ~Ga~~i~i~------DT~G----~~~P~~v~~~v~~l~ 182 (333)
T TIGR03217 155 YGADCVYIV------DSAG----AMLPDDVRDRVRALK 182 (333)
T ss_pred cCCCEEEEc------cCCC----CCCHHHHHHHHHHHH
Confidence 999876652 2211 233555666655554
No 184
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=85.66 E-value=2.2 Score=41.48 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=50.5
Q ss_pred ceEEEEecCcccChhhHHHHHH-----HHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEE
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVA 131 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~-----~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVg 131 (629)
..+++.++|+ |=-|.|.++. .++..|+..+..+.+||+++| |=+||......+.++.++. +.+| |.+|
T Consensus 31 ~Slw~~~~~t--~cC~iEi~a~~~p~yD~eRfGi~~~aSPRhADvLlV-tG~vT~km~~~l~~~yeqm--PePK~VIA~G 105 (173)
T PRK14818 31 SSLYYLTFGL--ACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIV-AGTLTYKMAERARLLYDQM--PEPKYVISMG 105 (173)
T ss_pred CCceeeEeCC--ccHHHHHHHhcCCccCHHHcCCeecCCcccccEEEE-eCcCccccHHHHHHHHHhC--CCCCEEEEec
Confidence 4567777774 3377887654 356788888999999999999 6678876655555544443 3444 4467
Q ss_pred CcccCC
Q 006836 132 GCVPQG 137 (629)
Q Consensus 132 Gc~a~~ 137 (629)
.|..+.
T Consensus 106 ~CA~sG 111 (173)
T PRK14818 106 SCSNCG 111 (173)
T ss_pred cccccC
Confidence 786654
No 185
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=85.26 E-value=51 Score=34.35 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCC-CCCCCc--CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTG-AYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~-~yg~d~--~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el 295 (629)
..++.++.++-++.|.+.|+..|-+.-.... .+.... ..+ .+.++.+..... ....+.. +.++..... +.+
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~-~~~~~~~~~--~~l 88 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCD-DEFLRRLLGDSK--GNTKIAV-MVDYGNDDI--DLL 88 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCC-HHHHHHHHhhhc--cCCEEEE-EECCCCCCH--HHH
Confidence 4678999999999999999998877511110 111110 011 355666654321 1223332 345542221 113
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 296 ~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
... ...+ ...+++.+ +....+...+.++.+++. |+.+...++..+ +-+++.+.+.++.+.+.+
T Consensus 89 ~~a-~~~g-v~~iri~~------------~~~~~~~~~~~i~~ak~~--G~~v~~~~~~a~-~~~~~~~~~~~~~~~~~g 151 (266)
T cd07944 89 EPA-SGSV-VDMIRVAF------------HKHEFDEALPLIKAIKEK--GYEVFFNLMAIS-GYSDEELLELLELVNEIK 151 (266)
T ss_pred HHH-hcCC-cCEEEEec------------ccccHHHHHHHHHHHHHC--CCeEEEEEEeec-CCCHHHHHHHHHHHHhCC
Confidence 222 2222 45666654 223688899999999999 999888888776 568899999999999999
Q ss_pred CCeEEE
Q 006836 376 FPQVHI 381 (629)
Q Consensus 376 ~d~v~i 381 (629)
.+.+.+
T Consensus 152 ~~~i~l 157 (266)
T cd07944 152 PDVFYI 157 (266)
T ss_pred CCEEEE
Confidence 987654
No 186
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=85.25 E-value=2.1 Score=43.23 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEECccc
Q 006836 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVP 135 (629)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VVVgGc~a 135 (629)
-..++..|+..||++++. ..+||+|.+ |++.+. ....+.+.++++++.+ .+|++||-..
T Consensus 105 ~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~l-S~~~~~-~~~~~~~~i~~L~~~~~~~~i~vGG~~~ 179 (213)
T cd02069 105 KNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGL-SGLLVP-SLDEMVEVAEEMNRRGIKIPLLIGGAAT 179 (213)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-ccchhc-cHHHHHHHHHHHHhcCCCCeEEEEChhc
Confidence 456778889999999764 568999999 666554 3456778888887664 5799999543
No 187
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=84.79 E-value=0.9 Score=49.48 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=41.0
Q ss_pred CCCCCCCCC-ceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeeccccc
Q 006836 50 SLSPKIPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS 108 (629)
Q Consensus 50 ~~~~~~~~~-~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~ 108 (629)
.-.+++|+. .+..++|+||..|..|++++.+.|++.||. ++.+-+-+++.
T Consensus 386 ~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYd---------v~~lFaysmR~ 436 (552)
T KOG2492|consen 386 HIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYD---------VVFLFAYSMRE 436 (552)
T ss_pred HHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccC---------eeeeEEeeecc
Confidence 446888985 799999999999999999999999999984 45444556644
No 188
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=84.43 E-value=2.2 Score=41.89 Aligned_cols=74 Identities=23% Similarity=0.515 Sum_probs=45.5
Q ss_pred eEEEEec--CcccChhhHHHHHHH-----HHhcCceee-CCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEE
Q 006836 60 TIYMKTF--GCSHNQSDSEYMAGQ-----LSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (629)
Q Consensus 60 ~v~i~Tl--GC~~N~~dse~m~~~-----L~~~G~~~~-~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVg 131 (629)
.++..++ || -|.|.++.. ++..|+..+ ..+.+||+++| |=+|+......+.++.+...+...-|.+|
T Consensus 42 slw~~~~~~~C----C~iE~~a~~~p~yD~eRfGi~~~~~sPRhADvllV-tG~VT~~m~~~l~~~~e~~p~pK~VIAvG 116 (182)
T PRK14816 42 SLWPLTFATSC----CGIEFMALGAARYDMARFGFEVARASPRQADMIMV-CGTITNKMAPVLKRLYDQMADPKYVIAVG 116 (182)
T ss_pred ccceeeeCcch----HHHHHHHhcCccccHHHhCccccCCCCCcceEEEE-ecCCcchhHHHHHHHHHhcCCCCEEEEec
Confidence 3444444 67 888887643 466787766 78999999999 55777654444444333322222224477
Q ss_pred CcccCCC
Q 006836 132 GCVPQGS 138 (629)
Q Consensus 132 Gc~a~~~ 138 (629)
-|..+..
T Consensus 117 sCA~~GG 123 (182)
T PRK14816 117 GCAVSGG 123 (182)
T ss_pred cccccCC
Confidence 7876654
No 189
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=83.20 E-value=6.6 Score=39.75 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~ 299 (629)
..+.++.++-++.|.+.|+..|-+. +...+. .-.+.++.+.+..+ ......+ ..+. ....+...+.+
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg---~~~~~~----~~~~~v~~~~~~~~--~~~~~~~--~~~~--~~~i~~~~~~~ 76 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVG---FPFASE----DDFEQVRRLREALP--NARLQAL--CRAN--EEDIERAVEAA 76 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEE---HCTSSH----HHHHHHHHHHHHHH--SSEEEEE--EESC--HHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEc---ccccCH----HHHHHhhhhhhhhc--cccccee--eeeh--HHHHHHHHHhh
Confidence 4789999999999999999998876 122222 12344555555443 2112222 2222 12222212222
Q ss_pred hCCCcccccccccCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC
Q 006836 300 RHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (629)
Q Consensus 300 ~~~~~~~~l~IGlESgsd~v-Lk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~ 376 (629)
...+ ...+++.+ +.|+.. ...+++. ...+.+.+.++.+++. |..+...++-.. .-+++.+.+.++.+.++++
T Consensus 77 ~~~g-~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~--g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 77 KEAG-IDIIRIFI-SVSDLHIRKNLNKSREEALERIEEAVKYAKEL--GYEVAFGCEDAS-RTDPEELLELAEALAEAGA 151 (237)
T ss_dssp HHTT-SSEEEEEE-ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT--TSEEEEEETTTG-GSSHHHHHHHHHHHHHHT-
T ss_pred Hhcc-CCEEEecC-cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc--CCceEeCccccc-cccHHHHHHHHHHHHHcCC
Confidence 2222 45666655 555533 3445543 3467788889999999 988855554443 4478899999999999999
Q ss_pred CeEEE
Q 006836 377 PQVHI 381 (629)
Q Consensus 377 d~v~i 381 (629)
+.+.+
T Consensus 152 ~~i~l 156 (237)
T PF00682_consen 152 DIIYL 156 (237)
T ss_dssp SEEEE
T ss_pred eEEEe
Confidence 87765
No 190
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=82.87 E-value=2.7 Score=39.96 Aligned_cols=64 Identities=23% Similarity=0.375 Sum_probs=37.2
Q ss_pred hhHHHHHHH-----HHhcC-ceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCC
Q 006836 73 SDSEYMAGQ-----LSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (629)
Q Consensus 73 ~dse~m~~~-----L~~~G-~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~ 137 (629)
-|.|.++.. ++..| ...+..+.+||+.+| |=+++.+..+.++++.++..+...-|.+|-|....
T Consensus 29 C~iE~~~~~~~~~D~erfG~i~~~~sPr~aDvllV-tG~vt~~~~~~l~~~~e~~p~pk~VIA~GsCA~~G 98 (145)
T TIGR01957 29 CAIEMMATGASRYDLDRFGSEVFRASPRQADVMIV-AGTVTKKMAPALRRLYDQMPEPKWVISMGACANSG 98 (145)
T ss_pred HHHHHHHccCccccHHHhCCceecCCCCcceEEEE-ecCCcHHHHHHHHHHHHhccCCceEEEecceeecC
Confidence 788877654 34556 556678899999999 55777654333333322221112224467775543
No 191
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=82.75 E-value=35 Score=37.21 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (629)
...+.++.++-++.|.+.|++.|-+. +...+.+ -.+.++.+.+..+ . ..+. ...++. .+. +...
T Consensus 18 ~~~s~~~k~~ia~~L~~~Gv~~IEvG---~p~~~~~----~~e~i~~i~~~~~--~-~~i~-~~~r~~--~~d---i~~a 81 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEAGVDELEVG---IPAMGEE----ERAVIRAIVALGL--P-ARLM-AWCRAR--DAD---IEAA 81 (365)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCHH----HHHHHHHHHHcCC--C-cEEE-EEcCCC--HHH---HHHH
Confidence 56899999999999999999999874 2333221 1366777765432 2 2221 122332 222 3333
Q ss_pred HhCCCcccccccccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 299 LRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
... + ...+++.+ +.|+.-+ ..+++. ...+.+.++++.+++. |+.+..++.-+. --+.+.+.+.++.+.+.+
T Consensus 82 ~~~-g-~~~i~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~--g~~v~~~~ed~~-r~~~~~l~~~~~~~~~~G 155 (365)
T TIGR02660 82 ARC-G-VDAVHISI-PVSDLQIEAKLRKDRAWVLERLARLVSFARDR--GLFVSVGGEDAS-RADPDFLVELAEVAAEAG 155 (365)
T ss_pred HcC-C-cCEEEEEE-ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC--CCEEEEeecCCC-CCCHHHHHHHHHHHHHcC
Confidence 332 2 45677766 6666555 445543 3445667889999998 887765554432 334677777778888888
Q ss_pred CCeEE
Q 006836 376 FPQVH 380 (629)
Q Consensus 376 ~d~v~ 380 (629)
.+.+.
T Consensus 156 a~~i~ 160 (365)
T TIGR02660 156 ADRFR 160 (365)
T ss_pred cCEEE
Confidence 87654
No 192
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=82.73 E-value=42 Score=34.85 Aligned_cols=145 Identities=15% Similarity=0.071 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (629)
...+.++.++-++.|.+.|+..|.+.. +..+.+ . .+.++.+.+..+ + ..+.. +.++. ...++...+.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~---~~~~~~---~-~~~~~~l~~~~~--~-~~~~~-l~r~~--~~~v~~a~~~ 81 (268)
T cd07940 15 VSLTPEEKLEIARQLDELGVDVIEAGF---PAASPG---D-FEAVKRIAREVL--N-AEICG-LARAV--KKDIDAAAEA 81 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCHH---H-HHHHHHHHHhCC--C-CEEEE-EccCC--HhhHHHHHHh
Confidence 467899999999999999999998853 111111 1 366777765443 2 22221 22332 1222222221
Q ss_pred HhCCCcccccccccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 299 LRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
... .....+.+-+ |.|+.-+ +.+++. ...+.+.+.++.+++. |+.+...++.+. .-+++.+.+.++.+.+++
T Consensus 82 ~~~-~~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~G 156 (268)
T cd07940 82 LKP-AKVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEYAKSH--GLDVEFSAEDAT-RTDLDFLIEVVEAAIEAG 156 (268)
T ss_pred CCC-CCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEeeecCC-CCCHHHHHHHHHHHHHcC
Confidence 111 1134555544 6666654 555654 3457788899999999 887765444432 246777888888889999
Q ss_pred CCeEEE
Q 006836 376 FPQVHI 381 (629)
Q Consensus 376 ~d~v~i 381 (629)
++.+.+
T Consensus 157 ~~~i~l 162 (268)
T cd07940 157 ATTINI 162 (268)
T ss_pred CCEEEE
Confidence 886654
No 193
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=82.30 E-value=50 Score=36.09 Aligned_cols=142 Identities=14% Similarity=0.028 Sum_probs=90.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
-...+.++.++-++.|.+.|++.|-+.. +..+. .-.+.++.+.+.. ....+. .+.++. .+. +..
T Consensus 16 ~~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~~----~~~e~i~~i~~~~---~~~~v~-~~~r~~--~~d---i~~ 79 (363)
T TIGR02090 16 GVSLTVEQKVEIARKLDELGVDVIEAGF---PIASE----GEFEAIKKISQEG---LNAEIC-SLARAL--KKD---IDK 79 (363)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCh----HHHHHHHHHHhcC---CCcEEE-EEcccC--HHH---HHH
Confidence 3568999999999999999999998742 22222 1245666665532 112221 122321 222 332
Q ss_pred HHhCCCcccccccccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
....+ ...+++-+ +.|+.-+ ..+++. ...+.+.+.++.+++. |+.+...+.-.. --+.+.+.+.++.+.+.
T Consensus 80 a~~~g--~~~i~i~~-~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~eda~-r~~~~~l~~~~~~~~~~ 153 (363)
T TIGR02090 80 AIDCG--VDSIHTFI-ATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEH--GLIVEFSAEDAT-RTDIDFLIKVFKRAEEA 153 (363)
T ss_pred HHHcC--cCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeecC-CCCHHHHHHHHHHHHhC
Confidence 33332 45666655 4555444 455554 3567888999999999 988887776554 45688888888889999
Q ss_pred CCCeEEE
Q 006836 375 KFPQVHI 381 (629)
Q Consensus 375 ~~d~v~i 381 (629)
+.+.+.+
T Consensus 154 g~~~i~l 160 (363)
T TIGR02090 154 GADRINI 160 (363)
T ss_pred CCCEEEE
Confidence 9887665
No 194
>COG3269 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=81.66 E-value=10 Score=31.74 Aligned_cols=58 Identities=29% Similarity=0.436 Sum_probs=43.0
Q ss_pred CCCcEEEEEEEEEecCCceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEec
Q 006836 423 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 484 (629)
Q Consensus 423 ~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~ 484 (629)
-.|.+++|-|++..+.|. -+.|-..| .|++++ ...|+.|+|+|+.+.+.+-++++++.
T Consensus 14 eeGe~y~V~I~d~g~~GD-GiarveGf-vVFVp~--a~~Gd~V~vkI~~v~~~~afaevve~ 71 (73)
T COG3269 14 EEGETYEVEIEDVGDQGD-GIARVEGF-VVFVPG--AEVGDEVKVKITKVKPNFAFAEVVER 71 (73)
T ss_pred ccCCEEEEEEEEeccCCC-ceEEEEEE-EEEeCC--CCCCCeeeEEEEEeeccceeeEEeec
Confidence 369999999998864332 13444433 456653 45799999999999999999998865
No 195
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=81.21 E-value=63 Score=33.73 Aligned_cols=148 Identities=16% Similarity=0.058 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchh-HHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL-EHLKEIAE 297 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~-~~l~el~~ 297 (629)
...+.++.++-++.|.+.|++.|.+... ..+. .-.+.++.+.+... ......-+....+..+. .....+..
T Consensus 15 ~~~s~e~k~~i~~~L~~~Gv~~IE~G~~---~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 15 ISFSVEDKLRIARKLDELGVDYIEGGWP---GSNP----KDTEFFARAKKLKL-KHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCC---cCCH----HHHHHHHHHHHcCC-CCcEEEEEecccccCCCccchHHHHH
Confidence 4678999999999999999999988431 1111 12344555544210 01111111111222121 11112222
Q ss_pred HHhCCCcccccccccCCCCHH-HHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CC--CCHHHHHHHHHHH
Q 006836 298 VLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGF-PG--ETDEDFNQTVNLI 371 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~-vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGf-PG--ETeedf~eTl~fl 371 (629)
+... + ...+++.+ |.|+. ..+.+++. ...+.+.+.++.+++. |+.+..+.+ .| .+ -+.+.+.+.++.+
T Consensus 87 a~~~-g-~~~i~i~~-~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~~-~~~d~~~~~~~~~~~~~~~~ 160 (273)
T cd07941 87 LLEA-G-TPVVTIFG-KSWDLHVTEALGTTLEENLAMIRDSVAYLKSH--GREVIFDAE-HFFDGYKANPEYALATLKAA 160 (273)
T ss_pred HHhC-C-CCEEEEEE-cCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEeEE-eccccCCCCHHHHHHHHHHH
Confidence 3332 2 55666654 44544 44666655 5677888999999999 988877533 33 22 3466667777888
Q ss_pred HhcCCCeEE
Q 006836 372 KEYKFPQVH 380 (629)
Q Consensus 372 ~~l~~d~v~ 380 (629)
.+.+.+.+.
T Consensus 161 ~~~g~~~i~ 169 (273)
T cd07941 161 AEAGADWLV 169 (273)
T ss_pred HhCCCCEEE
Confidence 888888654
No 196
>PRK00915 2-isopropylmalate synthase; Validated
Probab=80.46 E-value=41 Score=38.56 Aligned_cols=147 Identities=11% Similarity=-0.004 Sum_probs=83.7
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
..+++.++-++-++.|.+.|++.|-+.. ...+.+ + .+.++.+.+... + ..+.. +.+.. .+.++...+
T Consensus 20 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~s~~---d-~~~v~~i~~~~~--~-~~i~a-~~r~~--~~did~a~~ 86 (513)
T PRK00915 20 GASLTVEEKLQIAKQLERLGVDVIEAGF---PASSPG---D-FEAVKRIARTVK--N-STVCG-LARAV--KKDIDAAAE 86 (513)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcC---CCCChH---H-HHHHHHHHhhCC--C-CEEEE-EccCC--HHHHHHHHH
Confidence 3578999999999999999999998742 122221 1 344566654332 2 22221 12221 222322333
Q ss_pred HHhCCCcccccccccCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
.+...+ ...+++-+-+.+-.+...+++. ...+.+.+.++.++++ |..+..+..-+.. -+.+.+.+.++.+.+.+
T Consensus 87 a~~~~~-~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~f~~ed~~r-~d~~~l~~~~~~~~~~G 162 (513)
T PRK00915 87 ALKPAE-APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSY--TDDVEFSAEDATR-TDLDFLCRVVEAAIDAG 162 (513)
T ss_pred HhhcCC-CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeCCCCC-CCHHHHHHHHHHHHHcC
Confidence 332322 4567776633333334555543 3455667888999998 8776544443332 23566677777778888
Q ss_pred CCeEEE
Q 006836 376 FPQVHI 381 (629)
Q Consensus 376 ~d~v~i 381 (629)
.+.+.+
T Consensus 163 a~~i~l 168 (513)
T PRK00915 163 ATTINI 168 (513)
T ss_pred CCEEEE
Confidence 876543
No 197
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=79.98 E-value=94 Score=33.64 Aligned_cols=159 Identities=15% Similarity=0.174 Sum_probs=98.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeec-----CCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~-----d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~ 293 (629)
...+.+++++-++.|.+.|+..|.+.-. ..+.||... ..-.+.++.+.+..+ ...+.. ++.|..-. .+
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~-~~~~e~i~~~~~~~~---~~~~~~-ll~pg~~~--~~ 92 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA-HTDEEYIEAAAEVVK---QAKIAA-LLLPGIGT--VD 92 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCC-CCHHHHHHHHHHhCC---CCEEEE-EeccCccc--HH
Confidence 3578999999999999999999887521 122233321 123567777766543 233322 23442211 12
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 006836 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (629)
Q Consensus 294 el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~ 373 (629)
++......+ ...+.+.. +.++ .+...+.++.+++. |..+...++.. +.-+++.+.+.++.+.+
T Consensus 93 dl~~a~~~g--vd~iri~~-~~~e-----------~~~~~~~i~~ak~~--G~~v~~~l~~a-~~~~~e~l~~~a~~~~~ 155 (337)
T PRK08195 93 DLKMAYDAG--VRVVRVAT-HCTE-----------ADVSEQHIGLAREL--GMDTVGFLMMS-HMAPPEKLAEQAKLMES 155 (337)
T ss_pred HHHHHHHcC--CCEEEEEE-ecch-----------HHHHHHHHHHHHHC--CCeEEEEEEec-cCCCHHHHHHHHHHHHh
Confidence 233333332 45555554 2222 34678999999999 99998888877 46689999999999999
Q ss_pred cCCCeEEEEeceeCCCCccccCCCCCHHHHHHHHHHHH
Q 006836 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411 (629)
Q Consensus 374 l~~d~v~i~~ysP~PGTpa~~~~~v~~~~~~~R~~~L~ 411 (629)
++.+.+.+- .|-= ...++...++.+.+.
T Consensus 156 ~Ga~~i~i~------DT~G----~~~P~~v~~~v~~l~ 183 (337)
T PRK08195 156 YGAQCVYVV------DSAG----ALLPEDVRDRVRALR 183 (337)
T ss_pred CCCCEEEeC------CCCC----CCCHHHHHHHHHHHH
Confidence 999876542 2211 233566666655555
No 198
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=78.64 E-value=1e+02 Score=34.98 Aligned_cols=139 Identities=13% Similarity=0.089 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CCCcCCCHHHHHHHHHHhCCCCCCceE----EE----eec-CCcchh
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTML----RI----GMT-NPPFIL 289 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~y-g~d~~~~l~eLL~~L~~~i~~~~~~~i----ri----~~~-~p~~i~ 289 (629)
..+.++.+.-++.+.+.|+..|-+.|.-.+.. .+-..+.-.+.++.+.+..+ + ..+ |. ++. .|+++.
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~--~-~~l~~l~r~~N~~G~~~~~dDvv 97 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLK--N-TKIQMLLRGQNLVGYRHYADDVV 97 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCC--C-CEEEEEeccccccCcccccchhh
Confidence 57889999999999999999998865432210 00012334677888876543 2 122 21 111 233333
Q ss_pred HHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEE--EcCCCCCHHHHHHH
Q 006836 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII--CGFPGETDEDFNQT 367 (629)
Q Consensus 290 ~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~I--vGfPGETeedf~eT 367 (629)
+.. .+.+...+ ...+++.. +.|+ .+.....++.++++ |..+...+- ++ |-.|.+.+.+.
T Consensus 98 ~~f---v~~A~~~G-vd~irif~-~lnd-----------~~n~~~~i~~ak~~--G~~v~~~i~~t~~-p~~t~e~~~~~ 158 (467)
T PRK14041 98 ELF---VKKVAEYG-LDIIRIFD-ALND-----------IRNLEKSIEVAKKH--GAHVQGAISYTVS-PVHTLEYYLEF 158 (467)
T ss_pred HHH---HHHHHHCC-cCEEEEEE-eCCH-----------HHHHHHHHHHHHHC--CCEEEEEEEeccC-CCCCHHHHHHH
Confidence 322 22222222 34455433 4444 23455566666666 655543332 23 55566666666
Q ss_pred HHHHHhcCCCeEE
Q 006836 368 VNLIKEYKFPQVH 380 (629)
Q Consensus 368 l~fl~~l~~d~v~ 380 (629)
++.+.+.+.+.+.
T Consensus 159 a~~l~~~Gad~I~ 171 (467)
T PRK14041 159 ARELVDMGVDSIC 171 (467)
T ss_pred HHHHHHcCCCEEE
Confidence 6666666655543
No 199
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=77.68 E-value=96 Score=32.44 Aligned_cols=143 Identities=12% Similarity=0.150 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCCCCC-CceEE----Eee-cCCcchhHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELPPDG-STMLR----IGM-TNPPFILEH 291 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~--yg~d~~~~l~eLL~~L~~~i~~~~-~~~ir----i~~-~~p~~i~~~ 291 (629)
..+.++.++-+..|.+.|+..|-+...-.+. ++. ....-.+.++.+.+..+... ..+.| +++ ..|..+.+.
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~-~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRF-LNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccc-cCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 5788999999999999999998876421100 100 01223566777766443100 11222 111 134433332
Q ss_pred HHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHHHHH
Q 006836 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNL 370 (629)
Q Consensus 292 l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf-PGETeedf~eTl~f 370 (629)
. +....+. + ...+++.. +.|+ .+...+.++.+++. |..+...+.+-+ +.-+++.+.+.++.
T Consensus 96 d--i~~~~~~-g-~~~iri~~-~~~~-----------~~~~~~~i~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 96 F--VEKAAKN-G-IDIFRIFD-ALND-----------VRNLEVAIKAVKKA--GKHVEGAICYTGSPVHTLEYYVKLAKE 157 (275)
T ss_pred H--HHHHHHc-C-CCEEEEee-cCCh-----------HHHHHHHHHHHHHC--CCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence 2 3222222 2 34555544 2333 57889999999999 988776665422 55678889999999
Q ss_pred HHhcCCCeEEE
Q 006836 371 IKEYKFPQVHI 381 (629)
Q Consensus 371 l~~l~~d~v~i 381 (629)
+.+++.+.+.+
T Consensus 158 ~~~~Ga~~i~l 168 (275)
T cd07937 158 LEDMGADSICI 168 (275)
T ss_pred HHHcCCCEEEE
Confidence 99999987765
No 200
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=76.92 E-value=4.8 Score=39.72 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=38.3
Q ss_pred hhHHHHHHHH-----HhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCC
Q 006836 73 SDSEYMAGQL-----SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (629)
Q Consensus 73 ~dse~m~~~L-----~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~ 137 (629)
-|.|.++... +..|...+..+.+||+++| |=+++......+..+.+...+...-|.+|-|....
T Consensus 47 C~iE~~~~~~~~yDieRfGi~~~~sPr~aDvllV-~G~vt~~~~~~l~~~~e~mp~pk~VIA~GaCA~~G 115 (183)
T PRK06411 47 CAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIV-AGTLTNKMAPALRRLYDQMPEPKWVISMGSCANSG 115 (183)
T ss_pred hHHHHHHccCccccHHHhCccccCCCCceeEEEE-EeCCCccchHHHHHHHHHcCcCCeEEEEecccccC
Confidence 8888877553 4456656778999999999 55777654333333323222222234477786554
No 201
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=76.88 E-value=43 Score=35.27 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=88.4
Q ss_pred cCCCCHHHHHHHHHHHH-HCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC-CCceEEEeecCCcchhHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVI-ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD-GSTMLRIGMTNPPFILEHLKEI 295 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~-~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~-~~~~iri~~~~p~~i~~~l~el 295 (629)
-...|.++-++-++.|. +.|+++|-+.. +..+.+ -.+.+.++.+.-... ....+++...-|. ... +
T Consensus 13 ~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~s~~----e~~av~~~~~~~~~~~~~~~~~~~a~~~~--~~~---~ 80 (280)
T cd07945 13 GVSFSPSEKLNIAKILLQELKVDRIEVAS---ARVSEG----EFEAVQKIIDWAAEEGLLDRIEVLGFVDG--DKS---V 80 (280)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCEEEecC---CCCCHH----HHHHHHHHHHHhhhhccccCcEEEEecCc--HHH---H
Confidence 35688999999999975 45999998753 222221 124555554321000 0012233222232 122 3
Q ss_pred HHHHhCCCcccccccccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEE-cCC-CCCHHHHHHHHHH
Q 006836 296 AEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIIC-GFP-GETDEDFNQTVNL 370 (629)
Q Consensus 296 ~~l~~~~~~~~~l~IGlESgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~Iv-GfP-GETeedf~eTl~f 370 (629)
...... + ...+++.+ |.|+.-. +.+|+. ...+.+.+.++.+++. |+.+..++.- |-| .-+++.+.+.++.
T Consensus 81 ~~A~~~-g-~~~i~i~~-~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~--G~~v~~~~~d~~~~~r~~~~~~~~~~~~ 155 (280)
T cd07945 81 DWIKSA-G-AKVLNLLT-KGSLKHCTEQLRKTPEEHFADIREVIEYAIKN--GIEVNIYLEDWSNGMRDSPDYVFQLVDF 155 (280)
T ss_pred HHHHHC-C-CCEEEEEE-eCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhC--CCEEEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 222222 2 57788887 5555554 555654 4567788889999998 9888877764 223 3467888888899
Q ss_pred HHhcCCCeEEE
Q 006836 371 IKEYKFPQVHI 381 (629)
Q Consensus 371 l~~l~~d~v~i 381 (629)
+.+++.+.+.+
T Consensus 156 ~~~~G~~~i~l 166 (280)
T cd07945 156 LSDLPIKRIML 166 (280)
T ss_pred HHHcCCCEEEe
Confidence 99999887654
No 202
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=76.63 E-value=2 Score=42.48 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=44.1
Q ss_pred EEEEecCcccChhhHHHHHH-----HHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEECc
Q 006836 61 IYMKTFGCSHNQSDSEYMAG-----QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVAGC 133 (629)
Q Consensus 61 v~i~TlGC~~N~~dse~m~~-----~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVgGc 133 (629)
+++.+||+. --|.|.++- .|+..|+..+..+.+||+++| |=+|+......+.+..++.- .++ |.+|-|
T Consensus 30 lw~~~~~t~--cC~iE~~a~~~p~yD~eRfGi~~~asPR~ADvllV-tG~Vt~km~~~l~~~y~qmP--ePK~VIA~GaC 104 (189)
T PRK14813 30 LWPMGFGLA--CCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIV-AGTVTMKMAERVVRLYEQMP--EPRYVLSMGSC 104 (189)
T ss_pred CceeeeCcc--cHHHHHHHhcccCCCHHHcCCeecCCcccceEEEE-eccCchhhHHHHHHHHHhCC--CCCEEEEeccc
Confidence 444444443 255665543 356788888899999999999 55777665545544444432 344 446778
Q ss_pred ccC
Q 006836 134 VPQ 136 (629)
Q Consensus 134 ~a~ 136 (629)
..+
T Consensus 105 A~s 107 (189)
T PRK14813 105 SNC 107 (189)
T ss_pred ccC
Confidence 655
No 203
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=76.42 E-value=6.7 Score=35.35 Aligned_cols=62 Identities=21% Similarity=0.271 Sum_probs=38.4
Q ss_pred ceEEEEecC-cccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccc---hHHHHHHHHHHHhhC-CCCEEEE
Q 006836 59 ETIYMKTFG-CSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP---SQSAMDTLIAKCKSA-KKPLVVA 131 (629)
Q Consensus 59 ~~v~i~TlG-C~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~---ae~~~~~~ir~~k~~-~~~VVVg 131 (629)
.=+.+.|=| |+ ..+....+..|.+.| +|+|-+.||.+... .-.....+.+.+++. |.+||.|
T Consensus 39 elvgf~~CgGCp--g~~~~~~~~~l~~~~---------~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 39 ELVGFFTCGGCP--GRKLVRRIKKLKKNG---------ADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred EEEEEeeCCCCC--hhHHHHHHHHHHHCC---------CCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEeee
Confidence 345555555 99 566666777776654 68999999998732 111234444555555 7777765
No 204
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=76.21 E-value=3.9 Score=38.84 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=38.1
Q ss_pred CCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCCChh-hhcccccEEEcC
Q 006836 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIVGV 152 (629)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~~~e-~~~~~~d~VvG~ 152 (629)
++||+++|...|+.+.+- ..+++..+ .++.+++.|+-++..|+ +.....+.+-|.
T Consensus 61 ~~aD~viiTGsTlvN~Ti---~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~ 116 (147)
T PF04016_consen 61 PWADVVIITGSTLVNGTI---DDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGS 116 (147)
T ss_dssp GG-SEEEEECHHCCTTTH---HHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEE
T ss_pred ccCCEEEEEeeeeecCCH---HHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEE
Confidence 468999998888888764 44555554 46789999999999997 455566655554
No 205
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=75.84 E-value=32 Score=35.89 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=82.9
Q ss_pred CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHH
Q 006836 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (629)
Q Consensus 217 ~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~ 296 (629)
..+.++.+.+++.++.+.+.|+.-|-+-++ .-+.+-..++..+++.+.+.. ...+.+.+.+|..+..-+
T Consensus 18 ~~~~~d~~~i~~~A~~~~~~GAdiIDVg~~---~~~~eE~~r~~~~v~~l~~~~----~~plsIDT~~~~v~eaaL---- 86 (261)
T PRK07535 18 AIEAKDAAFIQKLALKQAEAGADYLDVNAG---TAVEEEPETMEWLVETVQEVV----DVPLCIDSPNPAAIEAGL---- 86 (261)
T ss_pred HHHcCCHHHHHHHHHHHHHCCCCEEEECCC---CCchhHHHHHHHHHHHHHHhC----CCCEEEeCCCHHHHHHHH----
Confidence 356788999999999999999987776543 222221234666677765532 245777766664322211
Q ss_pred HHHhCCCcccccccccCCCCHHHHHhhcC-------------CC--C----HHHHHHHHHHHHHhCCCC---EEEEEEEE
Q 006836 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNR-------------EY--T----LSDFRTVVDTLIELVPGM---QIATDIIC 354 (629)
Q Consensus 297 ~l~~~~~~~~~l~IGlESgsd~vLk~M~R-------------~~--t----~e~~~e~I~~lr~~~pgi---~i~td~Iv 354 (629)
+......+.+.++..-+ -.++++..+.+ +. + .+.+.+.++.+.++ |+ .+..|=.+
T Consensus 87 ~~~~G~~iINsIs~~~~-~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~--GI~~~~IilDPgi 163 (261)
T PRK07535 87 KVAKGPPLINSVSAEGE-KLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEY--GIPPEDIYIDPLV 163 (261)
T ss_pred HhCCCCCEEEeCCCCCc-cCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHc--CCCHhHEEEeCCC
Confidence 11111112233322111 13344332221 11 1 35567777888888 88 78889889
Q ss_pred cCCCCCHHHHHHHHHHHHhcC
Q 006836 355 GFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 355 GfPGETeedf~eTl~fl~~l~ 375 (629)
|+.|-+.+...++++.++.++
T Consensus 164 ~~~~~~~~~~~~~l~~i~~l~ 184 (261)
T PRK07535 164 LPLSAAQDAGPEVLETIRRIK 184 (261)
T ss_pred CcccCChHHHHHHHHHHHHHH
Confidence 977777777766666666553
No 206
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=74.53 E-value=7.2 Score=40.28 Aligned_cols=74 Identities=20% Similarity=0.381 Sum_probs=45.4
Q ss_pred ceEEEEecCcccChhhHHHHHHHH-----HhcCce-eeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCC--EEE
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQL-----SAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVV 130 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L-----~~~G~~-~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVV 130 (629)
..+++.++|| +--|.|.++... +..|+. .+..+.+||+.+| |=+|+......+.++.+.. ..++ |.+
T Consensus 31 ~Slw~~~~gt--~CC~iEila~l~p~yDieRFGi~~~~~sPRhADIlLV-tG~VT~km~~~L~rlyeqm--P~PK~VIAv 105 (264)
T PRK14819 31 SSVWPMAFGL--ACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIV-AGTVTKKMAPQVVRLYNQM--PEPRYVISM 105 (264)
T ss_pred CCcceeeeCC--cccHHHHHHhccccccHHHhCcccccCCCCcceEEEE-ecCCchhhHHHHHHHHHhc--cCCCeEEEE
Confidence 4567777775 337888877553 445553 4677889999999 5577765444444433332 2333 337
Q ss_pred ECcccCC
Q 006836 131 AGCVPQG 137 (629)
Q Consensus 131 gGc~a~~ 137 (629)
|-|..+.
T Consensus 106 GaCA~~G 112 (264)
T PRK14819 106 GACATSG 112 (264)
T ss_pred ccccccC
Confidence 7786554
No 207
>PRK09389 (R)-citramalate synthase; Provisional
Probab=72.97 E-value=1.3e+02 Score=34.21 Aligned_cols=142 Identities=13% Similarity=0.009 Sum_probs=87.4
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
-.+++.++.++-++.|.+.|++.|-... +..+.+ =.+.++.+.+.. ....+. .+.... .+. +..
T Consensus 18 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~~~~----d~e~v~~i~~~~---~~~~i~-a~~r~~--~~d---i~~ 81 (488)
T PRK09389 18 GVSLTPEEKLEIARKLDELGVDVIEAGS---AITSEG----EREAIKAVTDEG---LNAEIC-SFARAV--KVD---IDA 81 (488)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEeC---CcCCHH----HHHHHHHHHhcC---CCcEEE-eecccC--HHH---HHH
Confidence 3578999999999999999999998753 222221 145666665421 112221 112221 222 222
Q ss_pred HHhCCCcccccccccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
.... + .+.+|+.+ +.|+.-+ ..+++. ...+.+.+.++.+++. |+.+..+..-+. --+.+-+.+.++.+.+.
T Consensus 82 a~~~-g-~~~v~i~~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~~~~ed~~-r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 82 ALEC-D-VDSVHLVV-PTSDLHIEYKLKKTREEVLETAVEAVEYAKDH--GLIVELSGEDAS-RADLDFLKELYKAGIEA 155 (488)
T ss_pred HHhC-C-cCEEEEEE-ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEeeCC-CCCHHHHHHHHHHHHhC
Confidence 3332 2 56777777 5555544 444443 3456677778888888 888887777553 34566677888888899
Q ss_pred CCCeEEE
Q 006836 375 KFPQVHI 381 (629)
Q Consensus 375 ~~d~v~i 381 (629)
+.+.+.+
T Consensus 156 Ga~~i~l 162 (488)
T PRK09389 156 GADRICF 162 (488)
T ss_pred CCCEEEE
Confidence 9887554
No 208
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=72.79 E-value=12 Score=38.67 Aligned_cols=141 Identities=14% Similarity=0.155 Sum_probs=78.0
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-----CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~-----~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l 292 (629)
.+.++.+.+++.++.+.+.|+.-|-+-++.+....... ..++..+++.+.+.. ...+.+.+.+|..+..-+
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~----~~piSIDT~~~~v~~aaL 93 (258)
T cd00423 18 GKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP----DVPISVDTFNAEVAEAAL 93 (258)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC----CCeEEEeCCcHHHHHHHH
Confidence 44578999999999999999988887654432211110 023556666665421 345777766664332221
Q ss_pred HHHHHHHhC-CCcccccccccCCCCHHHHHhhcC-----------C------------CC----HHHHHHHHHHHHHhCC
Q 006836 293 KEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNR-----------E------------YT----LSDFRTVVDTLIELVP 344 (629)
Q Consensus 293 ~el~~l~~~-~~~~~~l~IGlESgsd~vLk~M~R-----------~------------~t----~e~~~e~I~~lr~~~p 344 (629)
+. ..+.+. +..+..++++++.+.+ + .. .+.+.+.++.+.++
T Consensus 94 -------~~g~~iINd--is~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 162 (258)
T cd00423 94 -------KAGADIIND--VSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEA-- 162 (258)
T ss_pred -------HhCCCEEEe--CCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHc--
Confidence 11 111121 1122222344332221 0 01 45677777878887
Q ss_pred CC---EEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 345 GM---QIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 345 gi---~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
|+ .+..|-.+||.. +.++...+++.+..+
T Consensus 163 Gi~~~~IilDPg~g~~k-~~~~~~~~l~~i~~~ 194 (258)
T cd00423 163 GIPPEDIILDPGIGFGK-TEEHNLELLRRLDAF 194 (258)
T ss_pred CCCHHHEEEeCCCCccC-CHHHHHHHHHHHHHH
Confidence 75 578888999877 555554555555544
No 209
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=71.66 E-value=6.6 Score=39.80 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=44.7
Q ss_pred eEEEEecCcccChhhHHHHHHH-----HHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcc
Q 006836 60 TIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCV 134 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~~-----L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~ 134 (629)
.+++.++|.+= -|.|.++.. |+..|+..+..+.+||+++| |=+|+......+.++-+...++..-|.+|-|.
T Consensus 33 Slw~~~~g~sC--C~iE~~a~~~p~yDleRfGi~~~aSPRhADvliV-tG~VT~km~~~L~rlyeqmPePK~VIA~GaCA 109 (225)
T CHL00023 33 SLWPLLYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT-AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACT 109 (225)
T ss_pred CcccccCCcch--HHHHHHHhCCCccCHHHcCCeecCCcccceEEEE-ecCCccccHHHHHHHHHhcCCCCeEEEEcccc
Confidence 34444444321 788877643 56678888899999999999 66787754444443333322222224467776
Q ss_pred cCC
Q 006836 135 PQG 137 (629)
Q Consensus 135 a~~ 137 (629)
.+.
T Consensus 110 ~sG 112 (225)
T CHL00023 110 ITG 112 (225)
T ss_pred ccC
Confidence 554
No 210
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=71.43 E-value=86 Score=35.80 Aligned_cols=147 Identities=11% Similarity=-0.044 Sum_probs=79.9
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
-.+++.++-++-++.|.+.|++.|-.. ++..+. .+ .+.++.+.+... ...-.-+...++..+ +...+
T Consensus 17 g~~~s~e~K~~ia~~L~~~GV~~IEvG---~p~~s~---~d-~e~v~~i~~~~~--~~~i~al~r~~~~di----d~a~~ 83 (494)
T TIGR00973 17 GASLTVEEKLQIALALERLGVDIIEAG---FPVSSP---GD-FEAVQRIARTVK--NPRVCGLARCVEKDI----DAAAE 83 (494)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEE---CCCCCH---HH-HHHHHHHHHhCC--CCEEEEEcCCCHHhH----HHHHH
Confidence 456899999999999999999999864 222221 11 344566655432 212122221223222 22222
Q ss_pred HHhCCCcccccccccCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
.+...+ ...+|+-+=+.+-.+...+++. ...+.+.+.++.+++. |..+..+..-+... +.+.+.+.++.+.+.+
T Consensus 84 al~~~~-~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~Ed~~r~-d~~~l~~~~~~~~~~G 159 (494)
T TIGR00973 84 ALKPAE-KFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNF--TDDVEFSCEDAGRT-EIPFLARIVEAAINAG 159 (494)
T ss_pred hccccC-CCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCC-CHHHHHHHHHHHHHcC
Confidence 222222 3556665533333334555543 3445566788888888 76554444433322 3555666667777778
Q ss_pred CCeEEE
Q 006836 376 FPQVHI 381 (629)
Q Consensus 376 ~d~v~i 381 (629)
.+.+.+
T Consensus 160 a~~i~l 165 (494)
T TIGR00973 160 ATTINI 165 (494)
T ss_pred CCEEEe
Confidence 776543
No 211
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=70.72 E-value=9.5 Score=37.60 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=42.3
Q ss_pred eEEEEecCcccChhhHHHHHHH-----HHhcCceee-CCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEE
Q 006836 60 TIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVA 131 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~~-----L~~~G~~~~-~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVg 131 (629)
.+++.++||+= -|.|.++-. ++..|+..+ ..+.+||+++| |=+|+.+..+.+..+-+ .+ +.++ |.+|
T Consensus 34 Slw~~~~~~sC--C~iE~~a~~~~~yDieRfGi~~~~~SPR~ADillV-tG~VT~~m~~~l~r~ye-~~-p~pK~VIAvG 108 (183)
T PRK14815 34 SLWPMPMGLAC--CAIELMAVACSRFDISRFGAEVMRFSPRQADVMIV-AGTVTYKMALAVRRIYD-QM-PEPKWVIAMG 108 (183)
T ss_pred CccceeEccch--HHHHHHHhcCccccHHHhCcccCCCCCccccEEEE-eCcCchhhHHHHHHHHH-hC-CCCCEEEEec
Confidence 45555555532 777876532 455676554 77899999999 55777654333333222 22 3344 3367
Q ss_pred CcccCC
Q 006836 132 GCVPQG 137 (629)
Q Consensus 132 Gc~a~~ 137 (629)
.|..+.
T Consensus 109 sCA~~G 114 (183)
T PRK14815 109 ACASSG 114 (183)
T ss_pred cccccC
Confidence 785543
No 212
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=70.42 E-value=1.1e+02 Score=35.34 Aligned_cols=150 Identities=16% Similarity=0.020 Sum_probs=81.8
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh-CCCCCCceEEEeecCCcchhH-HHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILE-HLKEI 295 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~-i~~~~~~~iri~~~~p~~i~~-~l~el 295 (629)
-.+++.++.++-++.|.+.|+++|-..- .....+ -.+.++.+.+. +. ......+.......+.. ....+
T Consensus 21 g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~---p~as~~----d~~~~~~i~~~~l~--~~~i~~~~~~~~~~i~~~~d~~~ 91 (524)
T PRK12344 21 GISFSVEDKLRIARKLDELGVDYIEGGW---PGSNPK----DTEFFKRAKELKLK--HAKLAAFGSTRRAGVSAEEDPNL 91 (524)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcC---CcCChh----HHHHHHHHHHhCCC--CcEEEEEeeccccCCCcccHHHH
Confidence 3578999999999999999999998732 111111 13455666431 11 11222222222222211 00112
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC--CCCHHHHHHHHHHH
Q 006836 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFP--GETDEDFNQTVNLI 371 (629)
Q Consensus 296 ~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfP--GETeedf~eTl~fl 371 (629)
..+.. .+ ...+|+.+-+.+-...+.+++. ...+.+.+.++.++++ |..+..+.+.-+. -.+.+-+.+.++.+
T Consensus 92 e~~~~-~g-~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~e~~~Da~r~d~~~l~~~~~~~ 167 (524)
T PRK12344 92 QALLD-AG-TPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAH--GREVIFDAEHFFDGYKANPEYALATLKAA 167 (524)
T ss_pred HHHHh-CC-CCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEccccccccccCCHHHHHHHHHHH
Confidence 22222 22 4667776644333334555543 4667788889999998 8776543331111 12344456667777
Q ss_pred HhcCCCeEE
Q 006836 372 KEYKFPQVH 380 (629)
Q Consensus 372 ~~l~~d~v~ 380 (629)
.+.+.+.+.
T Consensus 168 ~~~Gad~i~ 176 (524)
T PRK12344 168 AEAGADWVV 176 (524)
T ss_pred HhCCCCeEE
Confidence 788888765
No 213
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=69.54 E-value=1.8e+02 Score=34.08 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCC
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~--yg~d~~~~l~eLL~~L~~~i~ 271 (629)
..+.++.+.-++.+.+.|+..|-..|.-++. |.. ...+-.+.|+.+.+.++
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~-~~e~p~e~lr~l~~~~~ 75 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRF-LGEDPWERLRELKKAMP 75 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccc-cCCCHHHHHHHHHHhCC
Confidence 4678888888888888899999886542222 110 12334677777776554
No 214
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=67.95 E-value=1.2e+02 Score=32.23 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~ 268 (629)
.++.+++...+..+.+.|+++|..+..|...-+......-.+|++.|..
T Consensus 93 ~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~ 141 (296)
T PRK09432 93 DATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKS 141 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHH
Confidence 4578899999999999999999888777554332211223466665554
No 215
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=67.53 E-value=98 Score=32.80 Aligned_cols=118 Identities=17% Similarity=0.221 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhH---HHHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE---HLKE 294 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~---~l~e 294 (629)
-++..+|.+.++.+.+.|+++|.++..|...++...+ ..-.+|++.++.... +...+... .+|..-.+ ...+
T Consensus 88 d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~--~~f~i~~A-~~Pe~h~~s~~~~~d 164 (291)
T COG0685 88 DRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRG--GIFDIGVA-AYPEGHPESKDVKED 164 (291)
T ss_pred CCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcC--CeEEEEEE-eCCCCCccchhhHHH
Confidence 4588999999999999999999998878741111111 355778888775432 22444443 46653322 1122
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC
Q 006836 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356 (629)
Q Consensus 295 l~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf 356 (629)
+..+.+. +++|-+.++..+ -++.+.+.+..++++.+ |+ ..-|+.|+
T Consensus 165 ~~~lkrK----------v~aGAd~~iTQ~--~fd~e~~~~~~~~~~~~--g~--~~pI~~Gi 210 (291)
T COG0685 165 IKRLKRK----------VDAGADFFITQF--FFDVEAFERFAERVRAA--GI--DIPIIPGI 210 (291)
T ss_pred HHHHHHH----------HhcchHHHHHHH--ccCHHHHHHHHHHHHhc--CC--CCCeeecc
Confidence 3333221 346666666554 46888999999999988 54 22445544
No 216
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=67.05 E-value=34 Score=38.25 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=43.8
Q ss_pred EEEEEEEEEecCCceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEecccccccc
Q 006836 427 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDK 491 (629)
Q Consensus 427 ~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~~~~~~ 491 (629)
.+++-|+..+.+| .-+||.. ...|+|+ ...+|+.|.|+|++..+.+..|++++..+.....
T Consensus 15 ~~~l~i~~l~~~G-~Gv~~~~-~~~vfV~--~~lPGe~v~v~i~~~~~~~~~~~~~~vl~~sp~R 75 (443)
T PRK13168 15 IITVTIESLDHDG-RGVARHN-GKTVFIE--GALPGERVEVQVTEDKKQYARAKVVRILKPSPER 75 (443)
T ss_pred EEEEEEEEcCCCC-ceEEEEC-CEEEEeC--CCCCCCEEEEEEEEecCcEEEEEEEEEecCCccc
Confidence 3456677776554 3458864 3677775 4578999999999988888899998876654444
No 217
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=66.79 E-value=7.9 Score=36.31 Aligned_cols=60 Identities=22% Similarity=0.377 Sum_probs=36.5
Q ss_pred CcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEE--EECcccC
Q 006836 67 GCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV--VAGCVPQ 136 (629)
Q Consensus 67 GC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV--VgGc~a~ 136 (629)
.|---+||.| +.|..++..+..||++++ |=.||....+.+..+-++. +.+|+| +|-|.-+
T Consensus 28 a~~sP~YDaE-------rfgI~~v~sPRhADiLlV-TG~vT~~~~e~lkk~Yea~--PePKiViA~GaCa~~ 89 (148)
T COG3260 28 AALSPRYDAE-------RFGIKVVNSPRHADILLV-TGAVTRQMREPLKKAYEAM--PEPKIVIAVGACALS 89 (148)
T ss_pred eccCcccchH-------HheeEEeCCCccccEEEE-eccccHHHHHHHHHHHHhC--CCCcEEEEEcccccC
Confidence 4444456654 568999999999999999 5567754433433333322 234544 5666443
No 218
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=66.09 E-value=1.7e+02 Score=30.26 Aligned_cols=139 Identities=15% Similarity=0.172 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeec-----CCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~-----d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~ 293 (629)
...+.++.++-++.|.+.|+..|-+... ..+.++.. ...-.+.++.+.+..+ ...+... ..+.... .+
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~~~~e~i~~~~~~~~---~~~~~~~-~~~~~~~--~~ 89 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AHTDEEYLEAAAEALK---QAKLGVL-LLPGIGT--VD 89 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCC-CCChHHHHHHHHHhcc---CCEEEEE-ecCCccC--HH
Confidence 4578999999999999999998887621 11111111 1223567777765443 2333222 2221111 12
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 006836 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (629)
Q Consensus 294 el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~ 373 (629)
.+......+ ...+.+.+ +.|+ ...+.+.++.+++. |..+...++-.+ .-+++.+.+.++.+.+
T Consensus 90 ~i~~a~~~g--~~~iri~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (263)
T cd07943 90 DLKMAADLG--VDVVRVAT-HCTE-----------ADVSEQHIGAARKL--GMDVVGFLMMSH-MASPEELAEQAKLMES 152 (263)
T ss_pred HHHHHHHcC--CCEEEEEe-chhh-----------HHHHHHHHHHHHHC--CCeEEEEEEecc-CCCHHHHHHHHHHHHH
Confidence 233333332 45666544 3333 23678899999999 999888887665 3578899999999999
Q ss_pred cCCCeEEE
Q 006836 374 YKFPQVHI 381 (629)
Q Consensus 374 l~~d~v~i 381 (629)
.+.+.+.+
T Consensus 153 ~G~d~i~l 160 (263)
T cd07943 153 YGADCVYV 160 (263)
T ss_pred cCCCEEEE
Confidence 99887653
No 219
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=63.25 E-value=2.7e+02 Score=32.14 Aligned_cols=151 Identities=12% Similarity=0.017 Sum_probs=84.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceE-EEeec-CCcchhHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML-RIGMT-NPPFILEHLKEI 295 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~i-ri~~~-~p~~i~~~l~el 295 (629)
-.+++.++-++-++.|.+.|+++|-.. +.....+ -.+.++.|.+.-. ....+ .+... .++...+....+
T Consensus 17 g~~~s~eeKl~Ia~~L~~~GVd~IE~G---~p~~s~~----d~~~v~~i~~~~~--~~~~i~~~~r~~r~~~~~~~d~~~ 87 (526)
T TIGR00977 17 GVSFSLEDKIRIAERLDDLGIHYIEGG---WPGANPK----DVQFFWQLKEMNF--KNAKIVAFCSTRRPHKKVEEDKML 87 (526)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCChH----HHHHHHHHHHhCC--CCcEEEEEeeecCCCCCCchHHHH
Confidence 467899999999999999999999873 2222221 1345555543210 11222 22212 232111111112
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEE---EEEEcCCCCCHHHHHHHHHH
Q 006836 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIAT---DIICGFPGETDEDFNQTVNL 370 (629)
Q Consensus 296 ~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~t---d~IvGfPGETeedf~eTl~f 370 (629)
..+... + ...+|+-+=+-+-.+...+++. ...+.+.+.++.++++ |..+.. +|.-|+. -+++.+.+.++.
T Consensus 88 ea~~~~-~-~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~--g~~V~~~~e~f~D~~r-~~~~~l~~~~~~ 162 (526)
T TIGR00977 88 QALIKA-E-TPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQ--GDEVIYDAEHFFDGYK-ANPEYALATLAT 162 (526)
T ss_pred HHHhcC-C-CCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeeeeeccc-CCHHHHHHHHHH
Confidence 222322 2 4567776644444444566553 4556677778999998 776643 3323432 356777777888
Q ss_pred HHhcCCCeEEEE
Q 006836 371 IKEYKFPQVHIS 382 (629)
Q Consensus 371 l~~l~~d~v~i~ 382 (629)
+.+.+.+.+.+-
T Consensus 163 a~~aGad~i~i~ 174 (526)
T TIGR00977 163 AQQAGADWLVLC 174 (526)
T ss_pred HHhCCCCeEEEe
Confidence 888888876653
No 220
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=63.08 E-value=2.9e+02 Score=32.32 Aligned_cols=52 Identities=13% Similarity=-0.011 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCC
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg-~d~~~~l~eLL~~L~~~i~ 271 (629)
..+.++.+.-++.|.+.|+..|-+.|.-++... +-....-.+.++.+.+..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~ 69 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALP 69 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCC
Confidence 578889999999999999999988754322210 0011334667777765443
No 221
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=63.08 E-value=13 Score=46.74 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEECcccC
Q 006836 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQ 136 (629)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VVVgGc~a~ 136 (629)
--.+.-.|+.+||++++. ..+||+|.+ |+..+. +...+.+.++.+++.| .+|+|||-..+
T Consensus 749 KnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~diVgL-S~Lmt~-t~~~m~~vi~~L~~~g~~v~v~vGGa~~s 824 (1178)
T TIGR02082 749 KNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHNADVIGL-SGLITP-SLDEMKEVAEEMNRRGITIPLLIGGAATS 824 (1178)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEE-cCcccc-cHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 346677889999999774 568999999 555544 4457888888888876 57999996444
No 222
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=62.87 E-value=33 Score=38.47 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=45.0
Q ss_pred cEEEEEEEEEecCCceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEecccc
Q 006836 426 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQ 487 (629)
Q Consensus 426 ~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~~ 487 (629)
.+.++.|+....+| .-+|+.... .|+|+. .++|+.|.|++++..+.+-.|++++..+.
T Consensus 3 ~~~~~~I~~l~~~G-~Gva~~~~~-~vfVp~--alPge~v~~~~~~~~~~~~~a~~~~i~~~ 60 (432)
T COG2265 3 QIIEVTIEDLGHNG-EGVARHDGK-VVFVPG--ALPGEEVEVRVTKVKKKYAEAKLVKVLEA 60 (432)
T ss_pred ceEEEEEEEcCCCC-eeEEEecCc-eEEeCC--CCCCcEEEEEEEeccccceeeEeeeeccC
Confidence 56778888876555 346777755 777764 57899999999999999999998876543
No 223
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=62.83 E-value=2.7e+02 Score=32.71 Aligned_cols=52 Identities=12% Similarity=-0.034 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-CcCCCHHHHHHHHHHhCC
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELP 271 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~-d~~~~l~eLL~~L~~~i~ 271 (629)
..+.++.+.-+..+.+.|+..|-+.|.-.+.... -...+..+.|+.+.+.++
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~ 74 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALP 74 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCC
Confidence 4678888888888888899888887543221100 011234555666655443
No 224
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=62.58 E-value=1.6e+02 Score=30.60 Aligned_cols=63 Identities=19% Similarity=0.325 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC-c--C---CCHHHHHHHHHHhCCCCCCceEEEeecCCc
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-I--G---VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d-~--~---~~l~eLL~~L~~~i~~~~~~~iri~~~~p~ 286 (629)
+..+.+.+++.++.+.+.|+.-|-+-+.-+.. |.+ . . .++..+++.+.+.. ...+.+.+.+|.
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p-~~~~i~~~~E~~rl~~~v~~i~~~~----~~plSIDT~~~~ 87 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAEGADIIDIGGESTRP-GADPVSVEEELERVIPVLEALRGEL----DVLISVDTFRAE 87 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCcEEEeCCCHH
Confidence 34689999999999999999888875543322 211 1 1 13444556655432 345677766664
No 225
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=62.54 E-value=1.1e+02 Score=35.18 Aligned_cols=149 Identities=13% Similarity=0.008 Sum_probs=80.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCC----ceEEEeecCCcchhHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS----TMLRIGMTNPPFILEHLK 293 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~----~~iri~~~~p~~i~~~l~ 293 (629)
-...+.++-++-++.|.+.|++.|.... ...+. ...+.++.|.+....... ....+...... ..+.++
T Consensus 100 gv~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s~----~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~-~~~dId 171 (503)
T PLN03228 100 GGSLTPPQKLEIARQLAKLRVDIMEVGF---PGSSE----EEFEAVKTIAKTVGNEVDEETGYVPVICGIARC-KKRDIE 171 (503)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH----HHHHHHHHHHHhcccccccccccceEEeeeccc-CHhhHH
Confidence 4578999999999999999999988742 23322 123446666543210000 01122111111 111222
Q ss_pred HHHHHHhCCCcccccccccCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH---HHHH
Q 006836 294 EIAEVLRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED---FNQT 367 (629)
Q Consensus 294 el~~l~~~~~~~~~l~IGlESgsd~v-Lk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeed---f~eT 367 (629)
...+.....+ ...+++-+ +.|+.- ...+++. ...+.+.+.++.++++ |.. .+.+|.+..+..| +.+.
T Consensus 172 ~a~~a~~~a~-~~~V~i~i-~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~--G~~---~v~f~~EDa~Rtd~efl~~~ 244 (503)
T PLN03228 172 AAWEALKYAK-RPRILAFT-STSDIHMKYKLKKTKEEVIEMAVSSIRYAKSL--GFH---DIQFGCEDGGRSDKEFLCKI 244 (503)
T ss_pred HHHHhhcccC-CCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEeccccccccCHHHHHHH
Confidence 2222222212 34566655 444444 3455553 4566778888889988 764 3567776655433 3555
Q ss_pred HHHHHhcCCCeEEE
Q 006836 368 VNLIKEYKFPQVHI 381 (629)
Q Consensus 368 l~fl~~l~~d~v~i 381 (629)
++.+.+.+.+.+.+
T Consensus 245 ~~~a~~~Gad~I~l 258 (503)
T PLN03228 245 LGEAIKAGATSVGI 258 (503)
T ss_pred HHHHHhcCCCEEEE
Confidence 56666778877543
No 226
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=62.24 E-value=13 Score=36.91 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=31.8
Q ss_pred HHhcCce-eeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCC
Q 006836 82 LSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (629)
Q Consensus 82 L~~~G~~-~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~ 137 (629)
++..|+. .+..+.+||+++| |=+|+.+..+.+.++-+...+...-|.+|-|....
T Consensus 59 ~eRfGi~~~~~sPR~ADvllV-tG~VT~~m~~~l~~~yeqmp~pk~VIAvGsCA~~G 114 (186)
T PRK14814 59 IARFGAERPSFSPRQADMILV-LGTITYKMAPVLRQIYDQMAEPKFVISVGACASSG 114 (186)
T ss_pred HHHhCccccCCCcccceEEEE-eccCchhhHHHHHHHHHhcCCCCeEEEeccccccC
Confidence 3455664 4677899999999 55777664444433333322222224477786554
No 227
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=61.79 E-value=2e+02 Score=29.88 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=39.3
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC-cC-----CCHHHHHHHHHHhCCCCCCceEEEeecCCc
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-IG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d-~~-----~~l~eLL~~L~~~i~~~~~~~iri~~~~p~ 286 (629)
.+..+++++++.++.+.+.|+.-|-+-+..+.. +.+ .. .++..+++.+.+.. ...+.+.+.+|.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p-~~~~i~~~~E~~rl~~~v~~~~~~~----~~plsiDT~~~~ 86 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEEGADIIDVGGESTRP-GADRVSPEEELNRVVPVIKALRDQP----DVPISVDTYRAE 86 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEeCCCHH
Confidence 444688999999999999999988885432211 111 11 12445555554422 356777766664
No 228
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=61.45 E-value=2.2e+02 Score=30.11 Aligned_cols=138 Identities=16% Similarity=0.199 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-C--CC---HHHHHHHHHHhCCCCCCceEEEeecCCcchhHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-G--VN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~-~--~~---l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l 292 (629)
+..+++.++++++.+.+.|+.-|-+-++-+.. |.+. . .. +..+++.|.+.. ...+.+.+.+|..+..
T Consensus 33 ~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrP-g~~~v~~eeE~~Rv~pvI~~l~~~~----~~~ISIDT~~~~va~~-- 105 (282)
T PRK11613 33 THNSLIDAVKHANLMINAGATIIDVGGESTRP-GAAEVSVEEELDRVIPVVEAIAQRF----EVWISVDTSKPEVIRE-- 105 (282)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEECCCHHHHHH--
Confidence 34589999999999999999888877654322 2221 0 12 344555555432 2456777655542221
Q ss_pred HHHHHHHhCC-CcccccccccCCCCHHHHHhhcCC-------C------C--------------HHHHHHHHHHHHHhCC
Q 006836 293 KEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNRE-------Y------T--------------LSDFRTVVDTLIELVP 344 (629)
Q Consensus 293 ~el~~l~~~~-~~~~~l~IGlESgsd~vLk~M~R~-------~------t--------------~e~~~e~I~~lr~~~p 344 (629)
.++.+ .+.+.+. |+. +++.++.+.+. | + .+.+.+.++.+.++
T Consensus 106 -----AL~~GadiINDI~-g~~--d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~-- 175 (282)
T PRK11613 106 -----SAKAGAHIINDIR-SLS--EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAA-- 175 (282)
T ss_pred -----HHHcCCCEEEECC-CCC--CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHc--
Confidence 11111 1222221 332 33433322110 0 1 24566778888888
Q ss_pred CC---EEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 345 GM---QIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 345 gi---~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
|+ .+..|=-+|| +.|.++=.+.++.+..+
T Consensus 176 GI~~~~IilDPGiGF-~k~~~~n~~ll~~l~~l 207 (282)
T PRK11613 176 GIAKEKLLLDPGFGF-GKNLSHNYQLLARLAEF 207 (282)
T ss_pred CCChhhEEEeCCCCc-CCCHHHHHHHHHHHHHH
Confidence 87 7888888898 66666555555555444
No 229
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=60.82 E-value=77 Score=33.15 Aligned_cols=150 Identities=16% Similarity=0.244 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcch-------hHHHHH
Q 006836 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI-------LEHLKE 294 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i-------~~~l~e 294 (629)
.++.+.+-+..|.+.|+++|.+..-++.. |. .+.+|.+.+.. ... ....+.++ .|-.. .++.+.
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiip-G~----Ey~~l~~~v~~-~~~-~F~~i~~g--~PLL~~~g~~~~~~D~~~ 126 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIP-GE----EYEKLRATVEA-YKH-DFKKIVLG--RPLLYTMGQENSPEDYEA 126 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCS-SH----HHHHHHHHHHH-HCC-CSSEEEEE----SCSS-----SHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeC-cH----hHHHHHHHHHH-hhc-cCCeEEec--ccccccccccCChHHHHH
Confidence 35556666777888999999998765543 33 34566666544 321 23466665 44322 334444
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhhcCC--CCH-HHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHH
Q 006836 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTL-SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 371 (629)
Q Consensus 295 l~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~--~t~-e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl 371 (629)
+.+.+... ++-.. .++.+=.|+-| +.. ..|..+-..+++. +.-.+...-+=|+|. +++.+..+
T Consensus 127 va~aL~~~-------~~~~~-~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~-~~~~v~vgtvEG~P~-----~~~vi~~L 192 (262)
T PF06180_consen 127 VAEALAEE-------FPKKR-KDEAVVLMGHGTPHPANAAYSALQAMLKKH-GYPNVFVGTVEGYPS-----LEDVIARL 192 (262)
T ss_dssp HHHHHHCC-------S-TT--TTEEEEEEE---SCHHHHHHHHHHHHHHCC-T-TTEEEEETTSSSB-----HHHHHHHH
T ss_pred HHHHHHHh-------ccccC-CCCEEEEEeCCCCCCccHHHHHHHHHHHhC-CCCeEEEEEeCCCCC-----HHHHHHHH
Confidence 55544321 11111 23333344443 222 2334444444444 223344445557775 88889999
Q ss_pred HhcCCCeEEEEeceeCCCCcccc
Q 006836 372 KEYKFPQVHISQFYPRPGTPAAR 394 (629)
Q Consensus 372 ~~l~~d~v~i~~ysP~PGTpa~~ 394 (629)
++.++..+++.||+-..|.-+.+
T Consensus 193 ~~~g~k~V~L~PlMlVAGdHa~n 215 (262)
T PF06180_consen 193 KKKGIKKVHLIPLMLVAGDHAKN 215 (262)
T ss_dssp HHHT-SEEEEEEESSS--HHHHC
T ss_pred HhcCCCeEEEEecccccchhhhh
Confidence 99999999999999999998764
No 230
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=60.13 E-value=2.3e+02 Score=29.80 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=20.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhCCC
Q 006836 320 LSAMNREYTLSDFRTVVDTLIELVPG 345 (629)
Q Consensus 320 Lk~M~R~~t~e~~~e~I~~lr~~~pg 345 (629)
+++++.+++.++..+.++.+|+..++
T Consensus 69 ~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 69 LRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred HHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 56777888888888888888876444
No 231
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.22 E-value=18 Score=36.51 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=19.2
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN 92 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~ 92 (629)
.+++.+.|- .-..=++.+.+.|+++||+++++
T Consensus 118 a~ri~vlTP---Y~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 118 AQRISVLTP---YIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred cceEEEecc---chhhhhhHHHHHHHhCCeEEEEe
Confidence 355555542 11222456677788899998764
No 232
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=57.88 E-value=1.9e+02 Score=32.64 Aligned_cols=206 Identities=15% Similarity=0.219 Sum_probs=109.4
Q ss_pred EeCCCCCCCCCCCccCccC--C---CcCCCCHHHHHHHHHHHHH------C---CC-------------cEEEEeecCCC
Q 006836 197 PINVGCLGACTYCKTKHAR--G---HLGSYTVESLVGRVRTVIA------D---GV-------------KEVWLSSEDTG 249 (629)
Q Consensus 197 ~isrGCp~~CsFC~ip~~r--G---~~Rsr~~e~Iv~Ei~~l~~------~---Gv-------------keI~L~g~d~~ 249 (629)
.-+-||.+.|.||--.... | ++..-.++-|+..+-.+.- . |+ .+..++|.-.
T Consensus 288 tPslacanKcvfcWrh~tnpv~~~wrwk~d~pevil~gal~lhy~mikqmkgvpgvk~Er~~ea~evrhcalslVgepi- 366 (601)
T KOG1160|consen 288 TPSLACANKCVFCWRHDTNPVGEIWRWKMDAPEVILKGALYLHYNMIKQMKGVPGVKAERFEEAEEVRHCALSLVGEPI- 366 (601)
T ss_pred CCCcccCCCCceeeeccCCcccceEEEecCCchhhhHHHHHHHHHHHHHhhcCCCcCHHHHHhhhhhhhheeeeecccc-
Confidence 3477899999999654332 2 2444567777766543321 1 21 2355555322
Q ss_pred CCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCC-
Q 006836 250 AYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT- 328 (629)
Q Consensus 250 ~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t- 328 (629)
.|+ .+..+++.|....- ...++-.+..| +.+..+.. ...+.+.+...+...|+.+.|+..
T Consensus 367 ~yp-----~in~f~k~lH~k~i---ssflvtnaq~p----e~~rnvk~-------vtqlyvsvda~Tktslk~idrPlfk 427 (601)
T KOG1160|consen 367 MYP-----EINPFAKLLHQKLI---SSFLVTNAQFP----EDIRNVKP-------VTQLYVSVDASTKTSLKKIDRPLFK 427 (601)
T ss_pred cch-----hhhHHHHHHHhccc---hHHhcccccCh----HHHhchhh-------hheeEEEEeecchhhhcCCCCchHH
Confidence 222 23445555543211 11222222333 22212222 345566777888899999999864
Q ss_pred --HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccC--CCCC-HHHH
Q 006836 329 --LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVP-SAVV 403 (629)
Q Consensus 329 --~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~--~~v~-~~~~ 403 (629)
+|.+++.++.+++.-..-.++..++=|+ +.+|..+-.+++..-.++.+-|---+-.-...+.++ ..+| -++.
T Consensus 428 dFwEr~~d~l~~lk~K~qrtvyRlTlVkg~---n~dd~~Ayfnlv~rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~ 504 (601)
T KOG1160|consen 428 DFWERFLDSLKALKKKQQRTVYRLTLVKGW---NSDDLPAYFNLVSRGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEV 504 (601)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEEEEeccc---cccccHHHHHHHhccCCceEEEeceeEecccccCcccccCccHHHHH
Confidence 3566666666665522344555555444 566777788888888788777744333323333333 3455 3444
Q ss_pred HHHHHHHHHHHHHhcccccCCC
Q 006836 404 KKRSRELTSVFEAFTPYLGMEG 425 (629)
Q Consensus 404 ~~R~~~L~~l~~~~~~~~~~vG 425 (629)
.+-..+|.++...++....+-|
T Consensus 505 v~Fv~eL~~l~~~ye~a~ehah 526 (601)
T KOG1160|consen 505 VEFVFELVDLLQEYEIACEHAH 526 (601)
T ss_pred HHHHHHHHHhhhhhhhhhcccC
Confidence 5555666555544444333333
No 233
>PLN02321 2-isopropylmalate synthase
Probab=56.74 E-value=1.1e+02 Score=36.18 Aligned_cols=146 Identities=14% Similarity=0.101 Sum_probs=77.3
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC--CCCce-EE---EeecCCcchhHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP--DGSTM-LR---IGMTNPPFILEH 291 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~--~~~~~-ir---i~~~~p~~i~~~ 291 (629)
-.+++.++-++-++.|.+.|++.|-... ...+.+ + .+.++.|.+.+.. ..... .. ++..+..++
T Consensus 102 g~~~s~eeKl~Ia~~L~~lGVd~IEvGf---P~~Sp~---D-~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dI--- 171 (632)
T PLN02321 102 GATLTSKEKLDIARQLAKLGVDIIEAGF---PIASPD---D-LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDI--- 171 (632)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---cCCCcc---H-HHHHHHHHHhcccCCCccccceeeeeehhccHHhH---
Confidence 4578999999999999999999998742 222221 1 3346666543210 00001 11 111222222
Q ss_pred HHHHHHHHhCCCcccccccccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCH---HHHH
Q 006836 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD---EDFN 365 (629)
Q Consensus 292 l~el~~l~~~~~~~~~l~IGlESgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETe---edf~ 365 (629)
+...+.+.... ...+|+-+ +.|+.-+ +.+++. ...+.+.+.++.++++ |.. ++.++.+..+. +.+.
T Consensus 172 -d~A~~al~~a~-~~~I~i~~-stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~--G~~---~v~fs~EDa~rtd~d~l~ 243 (632)
T PLN02321 172 -DAAWEAVKHAK-RPRIHTFI-ATSEIHMEHKLRKTPDEVVEIARDMVKYARSL--GCE---DVEFSPEDAGRSDPEFLY 243 (632)
T ss_pred -HHHHHHhcCCC-CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEEecccCCCCCHHHHH
Confidence 22222221111 13455555 5555443 555543 3556677788888887 643 45666665443 4445
Q ss_pred HHHHHHHhcCCCeEEE
Q 006836 366 QTVNLIKEYKFPQVHI 381 (629)
Q Consensus 366 eTl~fl~~l~~d~v~i 381 (629)
+.++.+.+.+.+.+.+
T Consensus 244 ~~~~~a~~aGa~~I~L 259 (632)
T PLN02321 244 RILGEVIKAGATTLNI 259 (632)
T ss_pred HHHHHHHHcCCCEEEe
Confidence 5556666677776553
No 234
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=56.45 E-value=19 Score=45.37 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEECcccC
Q 006836 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQ 136 (629)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VVVgGc~a~ 136 (629)
--.+.-.|+..||++++. ..+||+|++ |+..+. +...+.+.++.+++.+ .+|++||-..+
T Consensus 768 kniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~~diVgL-S~L~t~-s~~~m~~~i~~L~~~g~~v~v~vGGa~~s 843 (1229)
T PRK09490 768 KNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEENADIIGL-SGLITP-SLDEMVHVAKEMERQGFTIPLLIGGATTS 843 (1229)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEE-cCcchh-hHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence 345677889999999774 568999999 555544 4457788888888775 57999995544
No 235
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=56.24 E-value=73 Score=29.70 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 327 YTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGf-PGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
.+.+.+.+.++.++++ |+.= .-+|+|- +.-.++++.+..+.+++++++.++ -|||+.
T Consensus 62 ~~~~~~~~~~~~l~~~--gl~~-v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf------~pgt~~ 119 (128)
T cd02072 62 HGEIDCKGLREKCDEA--GLKD-ILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVF------APGTPP 119 (128)
T ss_pred CCHHHHHHHHHHHHHC--CCCC-CeEEEECCCCCChhhhHHHHHHHHHcCCCEEE------CcCCCH
Confidence 4567788899999998 6631 3466665 345778888899999999998654 467764
No 236
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=56.08 E-value=1.1e+02 Score=31.49 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhC
Q 006836 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~ 301 (629)
++++..++++.+.+.|++.+.+= ++ .+. ..-.+.++++.+.++ ....+++. .|...-.+...++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiK---vg---~~~-~~d~~~v~~vr~~~g--~~~~l~vD-an~~~~~~~a~~~~~~l~~ 154 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLK---VG---RDP-ARDVAVVAALREAVG--DDAELRVD-ANRGWTPKQAIRALRALED 154 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEe---cC---CCH-HHHHHHHHHHHHhcC--CCCEEEEe-CCCCcCHHHHHHHHHHHHh
Confidence 57889999999999999988773 11 110 122577888887765 45677776 3332222333234444443
Q ss_pred CCcccccccccCCCCHHHHHhhc
Q 006836 302 PCVYSFLHVPVQSGSDAVLSAMN 324 (629)
Q Consensus 302 ~~~~~~l~IGlESgsd~vLk~M~ 324 (629)
.+ ..++.-|+...+.+.++.++
T Consensus 155 ~~-i~~iEeP~~~~d~~~~~~l~ 176 (265)
T cd03315 155 LG-LDYVEQPLPADDLEGRAALA 176 (265)
T ss_pred cC-CCEEECCCCcccHHHHHHHH
Confidence 33 46777777655544444443
No 237
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=54.12 E-value=48 Score=34.13 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=51.5
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCCC-----CCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEC
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS-----EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG 132 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~-----~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgG 132 (629)
.++|++.|- ....=.+.+...|++.||+++... ++.++.-+ ..+.+++.++++...++.-|+--
T Consensus 120 ~~RIalvTP---Y~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i--------~p~~i~~~~~~~~~~~aDAifis 188 (239)
T TIGR02990 120 VRRISLLTP---YTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARI--------SPDCIVEAALAAFDPDADALFLS 188 (239)
T ss_pred CCEEEEECC---CcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeec--------CHHHHHHHHHHhcCCCCCEEEEe
Confidence 577877764 666677889999999999987641 12222111 23456666666655555544444
Q ss_pred cccCCChh-hhccc---ccEEEcCCCHHHHHHHHH
Q 006836 133 CVPQGSRD-LKELE---GVSIVGVQQIDRVVEVVE 163 (629)
Q Consensus 133 c~a~~~~e-~~~~~---~d~VvG~~e~~~l~ell~ 163 (629)
|-.-..-+ +..++ +.-|+...+ ..++..++
T Consensus 189 CTnLrt~~vi~~lE~~lGkPVlsSNq-at~W~~Lr 222 (239)
T TIGR02990 189 CTALRAATCAQRIEQAIGKPVVTSNQ-ATAWRCLR 222 (239)
T ss_pred CCCchhHHHHHHHHHHHCCCEEEHHH-HHHHHHHH
Confidence 65443322 22222 223554443 34555554
No 238
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=53.84 E-value=34 Score=33.74 Aligned_cols=66 Identities=20% Similarity=0.357 Sum_probs=38.7
Q ss_pred ecCcccChhhHHHHHHHH-----HhcCce-eeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEECcccC
Q 006836 65 TFGCSHNQSDSEYMAGQL-----SAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVAGCVPQ 136 (629)
Q Consensus 65 TlGC~~N~~dse~m~~~L-----~~~G~~-~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVgGc~a~ 136 (629)
+.|| -|.|.++... +..|.. .+..+.+||+++| +=+|+......+ ..+++.. .+++ |.+|-|...
T Consensus 41 ~~sC----C~iE~~a~~~~~yDi~RfGi~~~~~sPR~aDillV-eG~VT~~m~~~l-~~~~e~~-p~pk~VIAvGaCA~~ 113 (180)
T PRK14820 41 ATSC----CGIEFMATMASHYDLARFGSERPSFSPRQADMLMV-MGTIAKKMAPVL-KQVYLQM-AEPRWVVAVGACASS 113 (180)
T ss_pred cccH----HHHHHHHhcCccccHHHhCccccCCCCccceEEEE-EecCCcccHHHH-HHHHHhc-CCCCeEEEEeccccc
Confidence 4477 8888877653 344553 4567899999999 556766543332 2222221 2333 447778655
Q ss_pred C
Q 006836 137 G 137 (629)
Q Consensus 137 ~ 137 (629)
.
T Consensus 114 G 114 (180)
T PRK14820 114 G 114 (180)
T ss_pred C
Confidence 3
No 239
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=53.35 E-value=2.9e+02 Score=29.19 Aligned_cols=153 Identities=13% Similarity=0.081 Sum_probs=80.3
Q ss_pred CCccCccCC---CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecC
Q 006836 208 YCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284 (629)
Q Consensus 208 FC~ip~~rG---~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~ 284 (629)
||.+..-.| .-.+.|.++=++-++.|.+.|+++|-+. +..++.. -.+.++.|.+... .....++..+.
T Consensus 4 ~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~g---fP~~~~~----e~e~~~~i~~~~~--~~~~~~~~al~ 74 (284)
T cd07942 4 WCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVG---FPSASQT----DFDFVRELIEEDL--IPDDVTIQVLT 74 (284)
T ss_pred ccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCHH----HHHHHHHHHHccC--CCCCCEEEEEc
Confidence 455542224 3467899999999999999999999875 4444432 1367777754310 00112232222
Q ss_pred CcchhHHHHHHHHHHhCCCcccccccccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCE-EEEEEEEcCCCC-
Q 006836 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQ-IATDIICGFPGE- 359 (629)
Q Consensus 285 p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~-i~td~IvGfPGE- 359 (629)
+.. ...++...+...... ...+++.+ |.|+.-+ +.+|+. ...+.+.++++.++++ |+. +.+.|.+-|-+|
T Consensus 75 r~~-~~die~a~~~~~~~~-~~~v~i~~-~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~--g~~~~~~~~~~~~~~ED 149 (284)
T cd07942 75 QAR-EDLIERTFEALRGAK-KAIVHLYN-ATSPLQRRVVFGKSKEEIIEIAVDGAKLVKEL--AAKYPETDWRFEYSPES 149 (284)
T ss_pred CCC-hhhHHHHHHHhCCCC-CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccCceEEEEECCcc
Confidence 221 111221221111110 12466655 5555544 566665 3556677888888888 653 334455555552
Q ss_pred ---C-HHHHHHHHHHHHhc
Q 006836 360 ---T-DEDFNQTVNLIKEY 374 (629)
Q Consensus 360 ---T-eedf~eTl~fl~~l 374 (629)
+ .+...+.++.+.+.
T Consensus 150 asr~~~~~l~~~~~~~~~~ 168 (284)
T cd07942 150 FSDTELDFALEVCEAVIDV 168 (284)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 2 33344444455444
No 240
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=53.09 E-value=1.6e+02 Score=31.03 Aligned_cols=51 Identities=8% Similarity=0.099 Sum_probs=34.6
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCC---CH---HHHHHHHHHhC
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV---NL---PILLNAIVAEL 270 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~---~l---~eLL~~L~~~i 270 (629)
+.++.+.-++..+..|.+.|++..+.. .++.||.++.. .+ .+.+++|.+.+
T Consensus 53 FWTKnp~P~l~~L~~l~~~gy~~yfq~--Tit~Y~~~lEp~vP~~~~~i~~f~~Ls~~i 109 (266)
T PF08902_consen 53 FWTKNPAPFLPYLDELDERGYPYYFQF--TITGYGKDLEPNVPPKDERIETFRELSERI 109 (266)
T ss_pred EecCCcHHHHhhHHHHHhCCCceEEEE--EeCCCCccccCCCCCHHHHHHHHHHHHHHH
Confidence 345677778889999988899876655 47789998743 23 33445555555
No 241
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=52.58 E-value=86 Score=36.90 Aligned_cols=102 Identities=11% Similarity=0.141 Sum_probs=67.7
Q ss_pred CceEEEEecCcccC-hhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHh
Q 006836 58 TETIYMKTFGCSHN-QSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCK 122 (629)
Q Consensus 58 ~~~v~i~TlGC~~N-~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k 122 (629)
.++|++.|+|=-.- ..=+....+.|...||+++.. ...||+++| |+-.....+.+-.+++.+|
T Consensus 494 rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~sga~i~vi--CssD~~Y~~~a~~~~~al~ 571 (619)
T TIGR00642 494 RPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKAGAQVAVL--CSSDKVYAQQGLEVAKALK 571 (619)
T ss_pred CCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHhcCCCEEEE--eCCCcchHHHHHHHHHHHH
Confidence 56899999995332 345666778888889998754 257899999 8876666667778888888
Q ss_pred hCCC-CEEEECcccCCChhhhcccccE--EEcCCCHHHHHHHH
Q 006836 123 SAKK-PLVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVV 162 (629)
Q Consensus 123 ~~~~-~VVVgGc~a~~~~e~~~~~~d~--VvG~~e~~~l~ell 162 (629)
..++ .|++.|--+. ..++.....|. .+|..-.+.|..+.
T Consensus 572 ~ag~~~v~lAG~p~~-~~~~~~aGvd~fi~~g~d~~~~L~~~~ 613 (619)
T TIGR00642 572 AAGAKALYLAGAFKE-FGDDAAEAIDGRLFMKMNVVDTLSSTL 613 (619)
T ss_pred hCCCCEEEEeCCCcc-hhhHHhcCCcceeEcCCcHHHHHHHHH
Confidence 8776 6888997654 22233334454 34554444443333
No 242
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=52.18 E-value=2.5e+02 Score=30.55 Aligned_cols=135 Identities=20% Similarity=0.266 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC------------------CCceEEEe
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD------------------GSTMLRIG 281 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~------------------~~~~iri~ 281 (629)
..+++.-++++..|.+.|..-+.+.-.|.- -++.+..|.+..+.+ +...+|+
T Consensus 30 T~Dv~atv~QI~~L~~aGceiVRvavp~~~---------~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRI- 99 (346)
T TIGR00612 30 TIDIDSTVAQIRALEEAGCDIVRVTVPDRE---------SAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRI- 99 (346)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEcCCCHH---------HHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEE-
Confidence 568999999999999999887777643311 122222222221111 3445554
Q ss_pred ecCCcch--hHHHHHHHHHHhCCCcccccccccCCCCHH--HHHhhcCCCCH----HHHHHHHHHHHHhCCCCEEEEEEE
Q 006836 282 MTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSDA--VLSAMNREYTL----SDFRTVVDTLIELVPGMQIATDII 353 (629)
Q Consensus 282 ~~~p~~i--~~~l~el~~l~~~~~~~~~l~IGlESgsd~--vLk~M~R~~t~----e~~~e~I~~lr~~~pgi~i~td~I 353 (629)
||..+ .+.+.++.+..+..++ -+-||+.|||=+ ++++.+. -+. +..++-++.+.+. |+. ||+
T Consensus 100 --NPGNig~~e~v~~vv~~ak~~~i--pIRIGVN~GSL~~~~~~kyg~-~t~eamveSAl~~v~~le~~--~F~---div 169 (346)
T TIGR00612 100 --NPGNIGFRERVRDVVEKARDHGK--AMRIGVNHGSLERRLLEKYGD-ATAEAMVQSALEEAAILEKL--GFR---NVV 169 (346)
T ss_pred --CCCCCCCHHHHHHHHHHHHHCCC--CEEEecCCCCCcHHHHHHcCC-CCHHHHHHHHHHHHHHHHHC--CCC---cEE
Confidence 56555 3455666666665543 577888888743 3333321 133 4556666677776 554 777
Q ss_pred EcCCCCCHHHHHHHHHHHHhc
Q 006836 354 CGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 354 vGfPGETeedf~eTl~fl~~l 374 (629)
+-+-.-+.....+..+++.+.
T Consensus 170 iS~KsSdv~~~i~ayr~la~~ 190 (346)
T TIGR00612 170 LSMKASDVAETVAAYRLLAER 190 (346)
T ss_pred EEEEcCCHHHHHHHHHHHHhh
Confidence 777665655555566655544
No 243
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=50.27 E-value=99 Score=29.01 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 326 ~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf-PGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
+.+.+.+.+.++.+++. |+.-. -+|+|- |.-.++|+.+-.+.+++++++.++ -|||++
T Consensus 63 ~~~~~~~~~~~~~l~~~--gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF------~pgt~~ 121 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEA--GLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVF------APGTPP 121 (134)
T ss_pred ccCHHHHHHHHHHHHHC--CCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEE------CcCCCH
Confidence 45677888999999998 76322 266664 334577887777888999998654 477764
No 244
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=49.58 E-value=2.2e+02 Score=31.15 Aligned_cols=135 Identities=24% Similarity=0.325 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC------------------CCceEEEe
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD------------------GSTMLRIG 281 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~------------------~~~~iri~ 281 (629)
..+.+.-+++|..|.+.|..-+.+.-.|.- -++-+..|.+..+.+ +...+|+
T Consensus 38 T~Dv~atv~Qi~~L~~aGceiVRvav~~~~---------~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRI- 107 (360)
T PRK00366 38 TADVEATVAQIKRLARAGCEIVRVAVPDME---------AAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRI- 107 (360)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEccCCHH---------HHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEE-
Confidence 578999999999999999988777644321 122333333322211 3445664
Q ss_pred ecCCcch---hHHHHHHHHHHhCCCcccccccccCCCC--HHHHHhhcCCCCH----HHHHHHHHHHHHhCCCCEEEEEE
Q 006836 282 MTNPPFI---LEHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTL----SDFRTVVDTLIELVPGMQIATDI 352 (629)
Q Consensus 282 ~~~p~~i---~~~l~el~~l~~~~~~~~~l~IGlESgs--d~vLk~M~R~~t~----e~~~e~I~~lr~~~pgi~i~td~ 352 (629)
||..+ .+.+.++.+.++..++ -+-||+.||| .++|++.+. .+. +...+-++.+.+. |+ .||
T Consensus 108 --NPGNig~~~~~v~~vv~~ak~~~i--pIRIGvN~GSL~~~~~~~yg~-~t~eamveSAl~~~~~le~~--~f---~~i 177 (360)
T PRK00366 108 --NPGNIGKRDERVREVVEAAKDYGI--PIRIGVNAGSLEKDLLEKYGE-PTPEALVESALRHAKILEEL--GF---DDI 177 (360)
T ss_pred --CCCCCCchHHHHHHHHHHHHHCCC--CEEEecCCccChHHHHHHcCC-CCHHHHHHHHHHHHHHHHHC--CC---CcE
Confidence 56555 4466667666666543 5678888886 444554422 133 4455566666666 55 477
Q ss_pred EEcCCCCCHHHHHHHHHHHHhc
Q 006836 353 ICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 353 IvGfPGETeedf~eTl~fl~~l 374 (629)
++-+-.-+.....+..+++.+.
T Consensus 178 viS~KsS~v~~~i~ayrlla~~ 199 (360)
T PRK00366 178 KISVKASDVQDLIAAYRLLAKR 199 (360)
T ss_pred EEEEEcCCHHHHHHHHHHHHhc
Confidence 7777666666666666665544
No 245
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=49.33 E-value=2.4e+02 Score=28.57 Aligned_cols=136 Identities=12% Similarity=0.052 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCC
Q 006836 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 303 (629)
Q Consensus 224 e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~ 303 (629)
++.++-++.+.+.|+.++.+++-+...++. ....++++++.+... ..-+--+-+.. .+. +..++.. +
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~---~~~~~~i~~i~~~~~---~pv~~~GGI~s---~~d---~~~~l~~-G 93 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEGR---ETMLDVVERVAEEVF---IPLTVGGGIRS---LED---ARRLLRA-G 93 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccccC---cccHHHHHHHHHhCC---CCEEEeCCCCC---HHH---HHHHHHc-C
Confidence 355666667777899999999765432322 223578888877542 22222221221 122 3333332 2
Q ss_pred cccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc-----------CCCCCHHHHHHHHHHHH
Q 006836 304 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG-----------FPGETDEDFNQTVNLIK 372 (629)
Q Consensus 304 ~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvG-----------fPGETeedf~eTl~fl~ 372 (629)
+..+.+|-... .+++.+.++++.+... .+.+..|+-.+ -+.+|..+..+.+..+.
T Consensus 94 -~~~v~ig~~~~-----------~~p~~~~~i~~~~~~~--~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~ 159 (243)
T cd04731 94 -ADKVSINSAAV-----------ENPELIREIAKRFGSQ--CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVE 159 (243)
T ss_pred -CceEEECchhh-----------hChHHHHHHHHHcCCC--CEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHH
Confidence 55555552211 1234444444444322 36667775433 34556666667778888
Q ss_pred hcCCCeEEEEecee
Q 006836 373 EYKFPQVHISQFYP 386 (629)
Q Consensus 373 ~l~~d~v~i~~ysP 386 (629)
+.+++.+.++....
T Consensus 160 ~~G~d~i~v~~i~~ 173 (243)
T cd04731 160 ELGAGEILLTSMDR 173 (243)
T ss_pred HCCCCEEEEeccCC
Confidence 88999888877554
No 246
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=49.20 E-value=1.3e+02 Score=29.54 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=49.4
Q ss_pred CCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCCChh---hhcccccEE-EcCCCHHHHHHHHHHHhcC
Q 006836 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD---LKELEGVSI-VGVQQIDRVVEVVEETLKG 168 (629)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~~~e---~~~~~~d~V-vG~~e~~~l~ell~~~~~g 168 (629)
++||+++|.=-.-.+-.-.++.+.++++-+.+++++++=..-+..|- +.....+.+ +-..+.+.++.-+-..+++
T Consensus 99 ~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 99 EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRILNEILSVLKG 177 (179)
T ss_pred hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccchhhHHHHHHHHHhcc
Confidence 45999999755444434467777788887778888877666677774 344455666 7777777666555444443
No 247
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=48.65 E-value=2.5e+02 Score=28.15 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=70.2
Q ss_pred HHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcc
Q 006836 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 305 (629)
Q Consensus 226 Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~ 305 (629)
.++-++.+.+.|++++.+++-+....+.+ .+ .++++++.+... ..+.++ -.+..+. . +.++... + +
T Consensus 32 p~~~a~~~~~~g~~~i~i~dl~~~~~~~~--~n-~~~~~~i~~~~~----~pv~~~-ggi~~~~-d---~~~~~~~-G-~ 97 (232)
T TIGR03572 32 PVNAARIYNAKGADELIVLDIDASKRGRE--PL-FELISNLAEECF----MPLTVG-GGIRSLE-D---AKKLLSL-G-A 97 (232)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCcccCCC--CC-HHHHHHHHHhCC----CCEEEE-CCCCCHH-H---HHHHHHc-C-C
Confidence 34445555678999999998665433332 23 577888876542 233333 2333222 2 3333332 2 5
Q ss_pred cccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC--CEEEEEEEEcCCC------------CCHHHHHHHHHHH
Q 006836 306 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG--MQIATDIICGFPG------------ETDEDFNQTVNLI 371 (629)
Q Consensus 306 ~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg--i~i~td~IvGfPG------------ETeedf~eTl~fl 371 (629)
..+-+|-.. ++ +.+.+.++ .+.++. +.+..|+--|+++ ++..+..+.++.+
T Consensus 98 ~~vilg~~~-----l~------~~~~~~~~----~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (232)
T TIGR03572 98 DKVSINTAA-----LE------NPDLIEEA----ARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREA 162 (232)
T ss_pred CEEEEChhH-----hc------CHHHHHHH----HHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHH
Confidence 666666222 11 12333333 333332 5566676554221 2344556677778
Q ss_pred HhcCCCeEEEEecee
Q 006836 372 KEYKFPQVHISQFYP 386 (629)
Q Consensus 372 ~~l~~d~v~i~~ysP 386 (629)
.+.+++.+.+...++
T Consensus 163 ~~~G~d~i~i~~i~~ 177 (232)
T TIGR03572 163 EQLGAGEILLNSIDR 177 (232)
T ss_pred HHcCCCEEEEeCCCc
Confidence 888999888887544
No 248
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=47.92 E-value=29 Score=34.27 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=36.8
Q ss_pred hhHHHHHHH-----HHhcCceee-CCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEECcccCC
Q 006836 73 SDSEYMAGQ-----LSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVAGCVPQG 137 (629)
Q Consensus 73 ~dse~m~~~-----L~~~G~~~~-~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVgGc~a~~ 137 (629)
-|.|.++-. ++..|+..+ ..+.+||+++| +=+|+.+... +.+.+.+.. ++++ |.+|-|....
T Consensus 47 C~iE~~a~~~~~yDleRfGi~~~~~sPR~ADillV-eG~VT~~m~~-~l~~~~e~~-p~pK~VIAvGaCA~~G 116 (181)
T PRK14817 47 CGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMV-VGTVNCKQAP-ILQRVYEQM-ADPKWVMAFGVCASSG 116 (181)
T ss_pred HHHHHHHhcCccccHHHhceeeccCCCcceeEEEE-EecCCccchH-HHHHHHHHc-ccCCEEEEeccccccC
Confidence 777776543 445676654 78999999999 5577765432 333333333 2343 3467775543
No 249
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=47.39 E-value=28 Score=41.91 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=46.0
Q ss_pred eEEEEecCcccChhhHHHHHHH-----HHhcCce-eeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEE
Q 006836 60 TIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVA 131 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~~-----L~~~G~~-~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVg 131 (629)
.+++.++||+= -|.|.++.. ++..|++ .+..+.+||+++| |=+|+......+..+.+.. +.+| |.+|
T Consensus 23 s~w~~~~~~~c--c~~E~~~~~~~~~D~~r~G~~~~~~sPr~aD~llv-~G~vt~~~~~~l~~~~~~~--p~pk~via~G 97 (788)
T PRK13292 23 SLWPMFFGLSC--CFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVI-AGTVFKKMAPSILRLYEQM--AEPKWVISMG 97 (788)
T ss_pred CCcceecCCcc--HHHHHHHhcCCcCCHHHcCCCccCCCcccceEEEE-ecCCcHhhHHHHHHHHHhC--CCCCEEEEec
Confidence 45555555522 788877543 4667876 5788999999999 5577765444444333332 2344 4478
Q ss_pred CcccCCC
Q 006836 132 GCVPQGS 138 (629)
Q Consensus 132 Gc~a~~~ 138 (629)
.|..+..
T Consensus 98 ~Ca~~GG 104 (788)
T PRK13292 98 SCANSGG 104 (788)
T ss_pred ccccCCC
Confidence 8876653
No 250
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=47.29 E-value=3.6e+02 Score=29.34 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=79.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee---------------c
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM---------------T 283 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~---------------~ 283 (629)
...+++..+++|..|.+.|..-+.++-++. .-++.+.+|.+.++.+-...++|.+ +
T Consensus 31 ~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~---------e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RI 101 (361)
T COG0821 31 DTADVEATVAQIKALERAGCDIVRVTVPDM---------EAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRI 101 (361)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEecCCH---------HHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEE
Confidence 345899999999999999988777765432 1144555555443321122222221 3
Q ss_pred CCcchh--HHHHHHHHHHhCCCcccccccccCCCC--HHHHHhhcCCCCHHH----HHHHHHHHHHhCCCCEEEEEEEEc
Q 006836 284 NPPFIL--EHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTLSD----FRTVVDTLIELVPGMQIATDIICG 355 (629)
Q Consensus 284 ~p~~i~--~~l~el~~l~~~~~~~~~l~IGlESgs--d~vLk~M~R~~t~e~----~~e~I~~lr~~~pgi~i~td~IvG 355 (629)
||..+- +.+.++.+.++..+ .-+-||+.+|| .++|+++..+ +.|. .++-++.+.+. |+. +|++-
T Consensus 102 NPGNig~~~~v~~vVe~Ak~~g--~piRIGVN~GSLek~~~~ky~~p-t~ealveSAl~~a~~~e~l--~f~---~i~iS 173 (361)
T COG0821 102 NPGNIGFKDRVREVVEAAKDKG--IPIRIGVNAGSLEKRLLEKYGGP-TPEALVESALEHAELLEEL--GFD---DIKVS 173 (361)
T ss_pred CCcccCcHHHHHHHHHHHHHcC--CCEEEecccCchhHHHHHHhcCC-CHHHHHHHHHHHHHHHHHC--CCC---cEEEE
Confidence 565442 34555666665544 35667777765 5566666533 4443 33344445555 444 77777
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 006836 356 FPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 356 fPGETeedf~eTl~fl~~l 374 (629)
.-.-+..+.-+..+.+.+.
T Consensus 174 ~K~Sdv~~~v~aYr~lA~~ 192 (361)
T COG0821 174 VKASDVQLMVAAYRLLAKR 192 (361)
T ss_pred EEcCCHHHHHHHHHHHHHh
Confidence 7666666666666655543
No 251
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=46.87 E-value=1.1e+02 Score=31.73 Aligned_cols=49 Identities=16% Similarity=-0.023 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC------CcCCCHHHHHHHHHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR------DIGVNLPILLNAIVA 268 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~------d~~~~l~eLL~~L~~ 268 (629)
.++..++..++..+.+.|+++|.++..|....+. ....+-.+|++.+..
T Consensus 69 ~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~ 123 (274)
T cd00537 69 DRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRK 123 (274)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 3456899999999999999999998666665542 111345777777765
No 252
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=46.75 E-value=3.9e+02 Score=30.23 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=96.7
Q ss_pred CccCccC-CCcCCCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecC
Q 006836 209 CKTKHAR-GHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284 (629)
Q Consensus 209 C~ip~~r-G~~Rsr~~e~Iv~Ei~~l~~~---GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~ 284 (629)
|-.+.-. |...--+.++|-+-++.|..+ +...|.|+|..-+. ..+|.++++...+. +-..+.+. +|
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv-----r~DL~eiv~~a~e~----g~~hVqin-Tn 147 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTL-----RDDLIEIIKIAREE----GYDHVQLN-TN 147 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecCCCccc-----hhhHHHHHHHHhhc----CccEEEEc-cC
Confidence 5443322 444455688888888888775 56789998854322 24678888777653 33444443 33
Q ss_pred CcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC---CEEEEEEEEcCCCCCH
Q 006836 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG---MQIATDIICGFPGETD 361 (629)
Q Consensus 285 p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg---i~i~td~IvGfPGETe 361 (629)
-..+... .++.+-+++++ .+.+.+.+.-.+++.+.++ .-++..+++.++++ | +.+...++=| -++
T Consensus 148 GirlA~~-~~~~~~l~~ag-~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~--g~~svVLVptl~rg---vNd 215 (475)
T COG1964 148 GIRLAFD-PEYVKKLREAG-VNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKA--GLPSVVLVPTLIRG---VND 215 (475)
T ss_pred ceeeccC-HHHHHHHHhcC-CcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhc--CCCcEEEEeehhcc---cCh
Confidence 3333222 23444455555 6888898888888886655 44556689999998 5 4555666654 477
Q ss_pred HHHHHHHHHHHhcC--CCeEEEEecee
Q 006836 362 EDFNQTVNLIKEYK--FPQVHISQFYP 386 (629)
Q Consensus 362 edf~eTl~fl~~l~--~d~v~i~~ysP 386 (629)
-+...-++|....- +..+++.+++-
T Consensus 216 ~~lG~iirfa~~n~dvVrgVnfQPVsl 242 (475)
T COG1964 216 HELGAIIRFALNNIDVVRGVNFQPVSL 242 (475)
T ss_pred HHHHHHHHHHHhccccccccceEEEEE
Confidence 88888899977542 33445554443
No 253
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=46.58 E-value=3.4e+02 Score=27.82 Aligned_cols=130 Identities=12% Similarity=0.193 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (629)
.-+..+.|..-++..-..|...+-+.. | ++|++..... ..-.+.++.++|..+.+-.
T Consensus 22 nNFd~~~V~~i~~AA~~ggAt~vDIAa--------d-----p~LV~~~~~~----s~lPICVSaVep~~f~~aV------ 78 (242)
T PF04481_consen 22 NNFDAESVAAIVKAAEIGGATFVDIAA--------D-----PELVKLAKSL----SNLPICVSAVEPELFVAAV------ 78 (242)
T ss_pred cccCHHHHHHHHHHHHccCCceEEecC--------C-----HHHHHHHHHh----CCCCeEeecCCHHHHHHHH------
Confidence 345677887777776666776655543 1 5677666543 2346788888886544322
Q ss_pred HhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCe
Q 006836 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 378 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~ 378 (629)
. .+ ... +|=|+=+.+=.-+|.++.+++++..+..|+..|++.++..+=.-+|- ++=.+....+.+++.|.
T Consensus 79 ~-AG--Adl----iEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~l---d~Qv~LA~~L~~~GaDi 148 (242)
T PF04481_consen 79 K-AG--ADL----IEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPL---DQQVQLAEDLVKAGADI 148 (242)
T ss_pred H-hC--CCE----EEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccH---HHHHHHHHHHHHhCCcE
Confidence 1 11 223 45566667777789999999999999999999999988777554532 33344556677888887
Q ss_pred EEE
Q 006836 379 VHI 381 (629)
Q Consensus 379 v~i 381 (629)
++.
T Consensus 149 IQT 151 (242)
T PF04481_consen 149 IQT 151 (242)
T ss_pred EEc
Confidence 765
No 254
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=45.99 E-value=58 Score=37.23 Aligned_cols=57 Identities=28% Similarity=0.309 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCceeeCCCCCCCEEE-Eeeccccc--------------chHHHHHHHHHHHhhCCCCEEEE
Q 006836 75 SEYMAGQLSAFGYALTDNSEEADIWL-INTCTVKS--------------PSQSAMDTLIAKCKSAKKPLVVA 131 (629)
Q Consensus 75 se~m~~~L~~~G~~~~~~~~~ADlvi-INTCtv~~--------------~ae~~~~~~ir~~k~~~~~VVVg 131 (629)
.+.+...+...|..+++.+++||+++ |||-.-.. ..-..+.+.|+.+.+.|++|.+.
T Consensus 280 ~esv~~hI~aaGg~~~~~~~~AD~vL~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l~~G~~Vaia 351 (497)
T PF13552_consen 280 GESVKEHIRAAGGVLVDSPEEADLVLAVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYLAKGKPVAIA 351 (497)
T ss_pred HHHHHHHHHhcCCEEcCCCCCCCEEEEEecCCCccccccccccccccccccHHHHHHHHHHHHHcCCcEEEE
Confidence 46788889999999999999999874 57664322 12244556667677778887763
No 255
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=45.90 E-value=3.6e+02 Score=30.09 Aligned_cols=145 Identities=15% Similarity=0.100 Sum_probs=86.7
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
-.++++++-++-++.|-+.|++.|-......+. .-.+.++.+.... +. ................+..
T Consensus 18 g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~-------~~~~~~~~i~~~~---~~---~~~~~~~~~~~~~~~~~ea 84 (409)
T COG0119 18 GVSFSVEEKIRIAKALDDLGVDYIEAGFPVASP-------GDFEFVRAIAEKA---GL---FICALIAALARAIKRDIEA 84 (409)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCh-------hhHHHHHHHHHhc---Cc---ccchhhhhhHHhHHhhHHH
Confidence 467899999999999999999999875432221 1255666665322 22 1111111111111113444
Q ss_pred HHhCCCcccccccccCCCCHHHH-HhhcC--CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNR--EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vL-k~M~R--~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
++..+ ...+|+=+ +.|+--+ ..++. ....+.+.+.++.++++ |+.+..+..-.+ .-+.+.+.+.++.+...
T Consensus 85 ~~~a~--~~~i~if~-~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~--g~~~~~~~Ed~~-rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 85 LLEAG--VDRIHIFI-ATSDLHLRYKLKKTREEVLERAVDAVEYARDH--GLEVRFSAEDAT-RTDPEFLAEVVKAAIEA 158 (409)
T ss_pred HHhCC--CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeccc-cCCHHHHHHHHHHHHHc
Confidence 44333 34555544 4444333 33332 34667788899999999 888887777666 55667777788888877
Q ss_pred CCCeEEE
Q 006836 375 KFPQVHI 381 (629)
Q Consensus 375 ~~d~v~i 381 (629)
+.+.+++
T Consensus 159 ga~~i~l 165 (409)
T COG0119 159 GADRINL 165 (409)
T ss_pred CCcEEEE
Confidence 7776664
No 256
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=45.61 E-value=2.8e+02 Score=29.69 Aligned_cols=133 Identities=16% Similarity=0.279 Sum_probs=75.3
Q ss_pred HHHHHHHHHCCCcEEEEeecCCCCCCC----CcCCCH----HHHHHHHHHhCCCCCCceEEEeecCCcchhH-HHHHHHH
Q 006836 227 VGRVRTVIADGVKEVWLSSEDTGAYGR----DIGVNL----PILLNAIVAELPPDGSTMLRIGMTNPPFILE-HLKEIAE 297 (629)
Q Consensus 227 v~Ei~~l~~~GvkeI~L~g~d~~~yg~----d~~~~l----~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~-~l~el~~ 297 (629)
++.++.+++.|++.+.|+=-.-+.++. +....| .++++++.+ +. ..+-++ | +.+ ...++.+
T Consensus 116 ~~~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt~~G~~vv~~mn~-lG----miiDvS--H---~s~~~~~dv~~ 185 (309)
T cd01301 116 LALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVREMNR-LG----IIIDLS--H---LSERTFWDVLD 185 (309)
T ss_pred HHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCCCCHHHHHHHHHHHH-cC----CEEEcC--C---CCHHHHHHHHH
Confidence 678899999999999998433333332 111223 345555533 21 223332 2 222 2223334
Q ss_pred HHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC----CCCCHHHHHHHHHHHHh
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF----PGETDEDFNQTVNLIKE 373 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf----PGETeedf~eTl~fl~~ 373 (629)
+...|-+ +-+.+.+.+..-.|..+-++++ .+.+. |-.+...+.-.| +.-|.+++.+-++.+.+
T Consensus 186 ~s~~Pvi-------aSHsn~ral~~h~RNltD~~i~----~ia~~--GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~ 252 (309)
T cd01301 186 ISNAPVI-------ASHSNARALCDHPRNLTDAQLK----AIAET--GGVIGVNFYPAFLSPGADATLDDVVRHIDYIVD 252 (309)
T ss_pred hcCCCEE-------EeccChHHhcCCCCCCCHHHHH----HHHHc--CCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 4333422 2244455555556777766644 45555 666666666555 35788999999999877
Q ss_pred c-CCCeEEEE
Q 006836 374 Y-KFPQVHIS 382 (629)
Q Consensus 374 l-~~d~v~i~ 382 (629)
+ +.+++.+.
T Consensus 253 l~G~dhVgiG 262 (309)
T cd01301 253 LIGIDHVGLG 262 (309)
T ss_pred hcCCCeEEEC
Confidence 5 78877763
No 257
>PRK15452 putative protease; Provisional
Probab=45.38 E-value=1e+02 Score=34.76 Aligned_cols=74 Identities=14% Similarity=0.053 Sum_probs=53.4
Q ss_pred ccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC-CHHHHHHHHHHHHhcCCCeEEEEe
Q 006836 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE-TDEDFNQTVNLIKEYKFPQVHISQ 383 (629)
Q Consensus 305 ~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGE-Teedf~eTl~fl~~l~~d~v~i~~ 383 (629)
...|.+|.++.+-+. -...++.+++.++++.++++ |..+...+= -+|.+ ..+.+.+.++.+.++++|.+-+.-
T Consensus 24 ADaVY~G~~~~~~R~---~~~~f~~edl~eav~~ah~~--g~kvyvt~n-~i~~e~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 24 ADAVYAGQPRYSLRV---RNNEFNHENLALGINEAHAL--GKKFYVVVN-IAPHNAKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred CCEEEECCCccchhh---hccCCCHHHHHHHHHHHHHc--CCEEEEEec-CcCCHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 688999999988543 34678899999999999999 866543321 23443 346677777888888999887764
Q ss_pred c
Q 006836 384 F 384 (629)
Q Consensus 384 y 384 (629)
+
T Consensus 98 ~ 98 (443)
T PRK15452 98 P 98 (443)
T ss_pred H
Confidence 3
No 258
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=45.01 E-value=1.4e+02 Score=27.83 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHh-CCCCEEEEEEEEcC-CCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 327 YTLSDFRTVVDTLIEL-VPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~-~pgi~i~td~IvGf-PGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
++...+.+.++.+++. .+++ -+++|- +.-.+.++.+..+.+++++++.++ -|||++
T Consensus 66 ~~~~~~~~~~~~L~~~~~~~~----~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf------~~~~~~ 123 (137)
T PRK02261 66 HGEIDCRGLREKCIEAGLGDI----LLYVGGNLVVGKHDFEEVEKKFKEMGFDRVF------PPGTDP 123 (137)
T ss_pred cCHHHHHHHHHHHHhcCCCCC----eEEEECCCCCCccChHHHHHHHHHcCCCEEE------CcCCCH
Confidence 4566778889999988 3343 345554 434567788888899999988554 357764
No 259
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=44.81 E-value=3.3e+02 Score=27.26 Aligned_cols=152 Identities=14% Similarity=0.232 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEE--eecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L--~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (629)
-+.-.+-+|++.+.+.|+..+.+ .|.+ |-+... -=+++++.|.+... -...+++...+|....+. +.+.
T Consensus 9 ad~~~l~~~i~~l~~~g~d~lHiDiMDg~---fvpn~~-~g~~~i~~i~~~~~--~~~DvHLMv~~P~~~i~~---~~~~ 79 (201)
T PF00834_consen 9 ADFLNLEEEIKRLEEAGADWLHIDIMDGH---FVPNLT-FGPDIIKAIRKITD--LPLDVHLMVENPERYIEE---FAEA 79 (201)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEEEEBSS---SSSSB--B-HHHHHHHHTTSS--SEEEEEEESSSGGGHHHH---HHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecccc---cCCccc-CCHHHHHHHhhcCC--CcEEEEeeeccHHHHHHH---HHhc
Confidence 34556788999999999887654 4433 222211 11678888876432 235677765677543332 3221
Q ss_pred HhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCe
Q 006836 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 378 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~ 378 (629)
+ ..++.+-+|+.++ ..+.++.+|++ |+....-+ . |+...+.++. ++. .+|.
T Consensus 80 ---g--~~~i~~H~E~~~~--------------~~~~i~~ik~~--g~k~Gial--n-P~T~~~~~~~---~l~--~vD~ 130 (201)
T PF00834_consen 80 ---G--ADYITFHAEATED--------------PKETIKYIKEA--GIKAGIAL--N-PETPVEELEP---YLD--QVDM 130 (201)
T ss_dssp ---T---SEEEEEGGGTTT--------------HHHHHHHHHHT--TSEEEEEE----TTS-GGGGTT---TGC--CSSE
T ss_pred ---C--CCEEEEcccchhC--------------HHHHHHHHHHh--CCCEEEEE--E-CCCCchHHHH---Hhh--hcCE
Confidence 1 4567777776543 55678899999 88875443 2 6544444433 222 3565
Q ss_pred EEEEeceeCCCCccccCCCCCHHHHHHHHHHHHHHHHH
Q 006836 379 VHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416 (629)
Q Consensus 379 v~i~~ysP~PGTpa~~~~~v~~~~~~~R~~~L~~l~~~ 416 (629)
+.+ ++..||..-..+ ....-+|.+++.++..+
T Consensus 131 Vlv--MsV~PG~~Gq~f----~~~~~~KI~~l~~~~~~ 162 (201)
T PF00834_consen 131 VLV--MSVEPGFGGQKF----IPEVLEKIRELRKLIPE 162 (201)
T ss_dssp EEE--ESS-TTTSSB------HGGHHHHHHHHHHHHHH
T ss_pred EEE--EEecCCCCcccc----cHHHHHHHHHHHHHHHh
Confidence 544 556677654333 22233555556655553
No 260
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=43.93 E-value=3.7e+02 Score=27.41 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCc
Q 006836 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (629)
Q Consensus 225 ~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (629)
+-++-++.+.+.|+++++++|-|. ..|.+ .+ .++++++.+... ..+.++- . +. .++++..++..+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~-~~g~~--~n-~~~i~~i~~~~~----~pv~vgG-G---ir-s~edv~~~l~~G-- 97 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDA-AFGRG--SN-RELLAEVVGKLD----VKVELSG-G---IR-DDESLEAALATG-- 97 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccc-cCCCC--cc-HHHHHHHHHHcC----CCEEEcC-C---CC-CHHHHHHHHHCC--
Confidence 555667778789999999998774 33432 34 489999987542 2333331 1 11 112234444332
Q ss_pred ccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE------EEcCCCCCHHHHHHHHHHHHhcCCCe
Q 006836 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI------ICGFPGETDEDFNQTVNLIKEYKFPQ 378 (629)
Q Consensus 305 ~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~------IvGfPGETeedf~eTl~fl~~l~~d~ 378 (629)
+..+.+|-.... +++-+.++++.+.+. +.++.|+ +-|+- ++..+..+.++.+.+.+++.
T Consensus 98 a~kvviGs~~l~-----------~p~l~~~i~~~~~~~---i~vsld~~~~~v~~~Gw~-~~~~~~~~~~~~l~~~G~~~ 162 (241)
T PRK14024 98 CARVNIGTAALE-----------NPEWCARVIAEHGDR---VAVGLDVRGHTLAARGWT-RDGGDLWEVLERLDSAGCSR 162 (241)
T ss_pred CCEEEECchHhC-----------CHHHHHHHHHHhhhh---EEEEEEEeccEeccCCee-ecCccHHHHHHHHHhcCCCE
Confidence 555555554432 233344444444332 3344444 12331 34455666777777888887
Q ss_pred EEEEec
Q 006836 379 VHISQF 384 (629)
Q Consensus 379 v~i~~y 384 (629)
+-++.-
T Consensus 163 iiv~~~ 168 (241)
T PRK14024 163 YVVTDV 168 (241)
T ss_pred EEEEee
Confidence 766643
No 261
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=43.77 E-value=2.4e+02 Score=29.91 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC-CceEEEeecCCcchhHH------HHHH
Q 006836 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STMLRIGMTNPPFILEH------LKEI 295 (629)
Q Consensus 223 ~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~-~~~iri~~~~p~~i~~~------l~el 295 (629)
.+.|-+.+..+.+.|..-|+|.|++..+|+ .++.+.+.++... ..-+.|. .|++.-+.. --.+
T Consensus 97 ~~~i~~~v~~~~~~g~~Pi~lGGdHsit~~---------~~~al~~~~~~~~~vgvi~~D-AH~D~~~~~~~~~~~g~~~ 166 (307)
T TIGR01227 97 QHEIAQTAAALLADHRVPVILGGGHSIAYA---------TFAALAQHYKGTTAIGVINFD-AHFDLRATEDGGPTSGTPF 166 (307)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCcchhHHH---------HHHHHHHhcCCCCeEEEEEEc-cCcCCCCCCCCCCCCchHH
Confidence 344455556666778777888887766663 3344444332001 2233333 232221110 0113
Q ss_pred HHHHhCCC--cccccccccCCCC--HHHHHhhcCC----CCHHHHHH-----HHHHHHHh---CCCCEEEE--EEE----
Q 006836 296 AEVLRHPC--VYSFLHVPVQSGS--DAVLSAMNRE----YTLSDFRT-----VVDTLIEL---VPGMQIAT--DII---- 353 (629)
Q Consensus 296 ~~l~~~~~--~~~~l~IGlESgs--d~vLk~M~R~----~t~e~~~e-----~I~~lr~~---~pgi~i~t--d~I---- 353 (629)
..++.... ..+.+++|+++.+ ++-++.+++. ++.+++.+ +.+.++.. ...+.++. |.+
T Consensus 167 ~~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvlDps~ 246 (307)
T TIGR01227 167 RQILDECQIEDFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVLDAAH 246 (307)
T ss_pred HHHhhccCCCCCcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEecccChhh
Confidence 33333221 1368999999984 4444444332 24454433 23333332 12244444 444
Q ss_pred ---EcCC---CCCHHHHHHHHHHHHhc-CCCeEEEEeceeCCC
Q 006836 354 ---CGFP---GETDEDFNQTVNLIKEY-KFPQVHISQFYPRPG 389 (629)
Q Consensus 354 ---vGfP---GETeedf~eTl~fl~~l-~~d~v~i~~ysP~PG 389 (629)
+|.| |=|..++.+.++.+... ++-.+.+.-|+|...
T Consensus 247 aPgtg~p~pgGLt~~e~~~il~~l~~~~~vvg~DvvE~~P~~D 289 (307)
T TIGR01227 247 APGVSAPAPGGLYPDELLELVKRIAASDKVRGAEIAEVNPTLD 289 (307)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEEEEEECCCCC
Confidence 4555 67888888888887543 566677777777644
No 262
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=43.76 E-value=1.1e+02 Score=29.94 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 006836 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (629)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ 383 (629)
+.+...++.+.+++.+|++.+.+. .|+- ++++-++.++.+.+.++|.+.+..
T Consensus 57 ~~~v~~~~~~~l~~~yP~l~i~g~--~g~f--~~~~~~~i~~~I~~s~~dil~Vgl 108 (177)
T TIGR00696 57 KPDVLQQLKVKLIKEYPKLKIVGA--FGPL--EPEERKAALAKIARSGAGIVFVGL 108 (177)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEE--CCCC--ChHHHHHHHHHHHHcCCCEEEEEc
Confidence 344556678889999999998864 5553 456667899999999999888763
No 263
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=43.44 E-value=41 Score=34.10 Aligned_cols=56 Identities=32% Similarity=0.514 Sum_probs=39.1
Q ss_pred cccccCCCCCCCCCCceEEEE---ecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEE
Q 006836 44 HLSKTGSLSPKIPGTETIYMK---TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101 (629)
Q Consensus 44 ~~~~~~~~~~~~~~~~~v~i~---TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviI 101 (629)
.|++.--.++.-|..++||+. |-+..+|. ...|...|.+.||.++++|++|..|+=
T Consensus 7 kMS~tIfLdPV~~~~rtVyv~vrNTSd~~~~l--~~~i~~~L~~kGY~vv~~P~~A~Y~lq 65 (215)
T PF05818_consen 7 KMSQTIFLDPVAPSQRTVYVQVRNTSDKDINL--ESQIISALQAKGYQVVDDPDEAHYWLQ 65 (215)
T ss_pred cccccEEeCCCCcccceEEEEEecCCCCccch--HHHHHHHHHHCCCEEecChhhCeEEEE
Confidence 344544444455677888885 45555532 345778899999999999999997753
No 264
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=43.37 E-value=39 Score=34.17 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCCChh-hhcccccEEEcCCCH
Q 006836 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIVGVQQI 155 (629)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~~~e-~~~~~~d~VvG~~e~ 155 (629)
.+.|+++++..|.-+.+- ..++.++ +..+.||+.|+.+|..|| +.....+++.|..=.
T Consensus 163 P~~Dvii~SaStlvN~T~---d~~Ld~a-k~ak~vvl~GPTa~l~pe~f~~~gvt~iag~kIi 221 (250)
T COG2014 163 PEVDVIIASASTLVNGTL---DMILDRA-KKAKLVVLTGPTAQLLPEFFKGTGVTHIAGTKII 221 (250)
T ss_pred ccccEEEEechhhhcCcH---HHHHhhh-ccCcEEEEeCCCcccchhHHhccCcceEEeeeec
Confidence 357999997666555443 3334433 234568999999999999 556666777777543
No 265
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=43.21 E-value=43 Score=34.15 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCCC
Q 006836 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (629)
Q Consensus 76 e~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~ 126 (629)
..+...|+.+||++++- ...||+|..++ +.|+. -....+++..+++.|.
T Consensus 122 ~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~Sa-lMTtt-m~~~~~viE~L~eeGi 184 (227)
T COG5012 122 NIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMSA-LMTTT-MIGMKDVIELLKEEGI 184 (227)
T ss_pred HHHHHHHHhCCcEEEecCCCCCHHHHHHHHHHcCCcEEechH-HHHHH-HHHHHHHHHHHHHcCC
Confidence 56788899999999874 45799999843 44432 2346778888888874
No 266
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=41.72 E-value=60 Score=36.14 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHhCCC--CCCceEEEeecCCcchhHHHHHHHHHHhCC
Q 006836 258 NLPILLNAIVAELPP--DGSTMLRIGMTNPPFILEHLKEIAEVLRHP 302 (629)
Q Consensus 258 ~l~eLL~~L~~~i~~--~~~~~iri~~~~p~~i~~~l~el~~l~~~~ 302 (629)
...++++.+.+.+.. .....+.++--.+....+.+.++.+.++..
T Consensus 55 t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~ 101 (404)
T TIGR03278 55 PPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDL 101 (404)
T ss_pred CHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhC
Confidence 456666666543221 123566676555555566666666666553
No 267
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=41.16 E-value=6.6e+02 Score=29.56 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEE-EEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 326 EYTLSDFRTVVDTLIELVPGMQI-ATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 326 ~~t~e~~~e~I~~lr~~~pgi~i-~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
.||.+.+.+.++.+.+. |+.. ..-=++|+ =+++++.+.+..+++.
T Consensus 150 ~~t~e~~~~~ak~l~~~--Gad~I~IkDtaG~--l~P~~v~~lv~alk~~ 195 (596)
T PRK14042 150 VHTLDNFLELGKKLAEM--GCDSIAIKDMAGL--LTPTVTVELYAGLKQA 195 (596)
T ss_pred CCCHHHHHHHHHHHHHc--CCCEEEeCCcccC--CCHHHHHHHHHHHHhh
Confidence 58999999999999988 7532 11113343 4788888888888764
No 268
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=40.43 E-value=6.2e+02 Score=29.08 Aligned_cols=52 Identities=17% Similarity=0.040 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CCCcCCCHHHHHHHHHHhCC
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~y-g~d~~~~l~eLL~~L~~~i~ 271 (629)
..+.++.+.-++.+.+.|+..|-..|.-++.- -+-..++-.+.|+.+.+.++
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~ 75 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMP 75 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCC
Confidence 45678888888888888888887775432220 00012333566666666554
No 269
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=40.29 E-value=76 Score=29.33 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCceee-----C-------CCCCCCEEEEeeccccc-chHHHHHHHHHHHhhCCCCEEEECcccC
Q 006836 75 SEYMAGQLSAFGYALT-----D-------NSEEADIWLINTCTVKS-PSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (629)
Q Consensus 75 se~m~~~L~~~G~~~~-----~-------~~~~ADlviINTCtv~~-~ae~~~~~~ir~~k~~~~~VVVgGc~a~ 136 (629)
.+.|+..|...|+++. . +..++|.++|-|.|... .....+...++.+...++++.+=|.+-+
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~~~k~~avfgtgd~ 92 (140)
T TIGR01754 18 AFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGYKPSNVAIFGTGET 92 (140)
T ss_pred HHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcccCCEEEEEEcCCC
Confidence 4566677777787753 1 23357999997766522 2223566677776556777666565533
No 270
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=40.22 E-value=2.5e+02 Score=29.24 Aligned_cols=127 Identities=18% Similarity=0.231 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-Cc---CCCHHHHHHHHHHhCCCCCCceEEEe-ecCCc----c--h
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELPPDGSTMLRIG-MTNPP----F--I 288 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~-d~---~~~l~eLL~~L~~~i~~~~~~~iri~-~~~p~----~--i 288 (629)
.++..++...+..+.+.|++.|..+..|....+. +. -..-.+|++.+.+.. +. ++++ -.+|. - .
T Consensus 69 ~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~---~~--f~ig~a~~Peghp~~~~~ 143 (272)
T TIGR00676 69 GATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEF---GD--FDIGVAAYPEKHPEAPNL 143 (272)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc---CC--eeEEEEeCCCCCCCCCCH
Confidence 4678899999999999999999855545554331 10 124567888776533 22 3443 23443 1 1
Q ss_pred hHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHH
Q 006836 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTV 368 (629)
Q Consensus 289 ~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl 368 (629)
...++.|.+-... + +.++ .. .--|+.+.+.+.++.+++. |+.+ =++.|+..=+ ....++
T Consensus 144 ~~~~~~L~~K~~a-G-A~f~-----------iT--Q~~fd~~~~~~~~~~~~~~--gi~~--PIi~Gi~p~~--s~k~~~ 202 (272)
T TIGR00676 144 EEDIENLKRKVDA-G-ADYA-----------IT--QLFFDNDDYYRFVDRCRAA--GIDV--PIIPGIMPIT--NFKQLL 202 (272)
T ss_pred HHHHHHHHHHHHc-C-CCeE-----------ee--ccccCHHHHHHHHHHHHHc--CCCC--CEecccCCcC--CHHHHH
Confidence 1222222221111 1 2111 11 1136778888888888888 6654 4677775422 233344
Q ss_pred HHHH
Q 006836 369 NLIK 372 (629)
Q Consensus 369 ~fl~ 372 (629)
.|+.
T Consensus 203 ~~~~ 206 (272)
T TIGR00676 203 RFAE 206 (272)
T ss_pred HHHh
Confidence 5554
No 271
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=39.57 E-value=87 Score=34.65 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC
Q 006836 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~ 387 (629)
+..+.|++.+..+++.+|++.+-+.++-+ .+.+++.+.++.+++.+.|.+-++..+|.
T Consensus 95 ~g~~~~l~~i~~~k~~~~~~pvIaSi~~~---~s~~~~~~~a~~~e~~GaD~iELNiSCPn 152 (385)
T PLN02495 95 RPFETMLAEFKQLKEEYPDRILIASIMEE---YNKDAWEEIIERVEETGVDALEINFSCPH 152 (385)
T ss_pred cCHHHHHHHHHHHHhhCCCCcEEEEccCC---CCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 46788888888888777887776666532 58999999999999999999999998886
No 272
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=39.33 E-value=3.9e+02 Score=27.95 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=19.3
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 006836 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (629)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~ 382 (629)
+.+-+|..+|-|..+++ .+.+++.+++.+.+-
T Consensus 116 vdGlIipDLP~ee~~~~---~~~~~~~gl~~I~lv 147 (259)
T PF00290_consen 116 VDGLIIPDLPPEESEEL---REAAKKHGLDLIPLV 147 (259)
T ss_dssp EEEEEETTSBGGGHHHH---HHHHHHTT-EEEEEE
T ss_pred CCEEEEcCCChHHHHHH---HHHHHHcCCeEEEEE
Confidence 45557778887655544 455777777655543
No 273
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=39.33 E-value=6.1e+02 Score=28.66 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCCCCCCceE----E----Eeec-CCcchh
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTML----R----IGMT-NPPFIL 289 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg-~d~~~~l~eLL~~L~~~i~~~~~~~i----r----i~~~-~p~~i~ 289 (629)
..+.++.+.-++.+.+.|+..|-+.|...+... +-....-.+.++.+.+.++ + ..+ | +++. .|+++.
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~--~-~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVK--K-TKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCC--C-CEEEEEeccccccccccCchhhH
Confidence 578899999999999999999998765433210 0011334677888876554 2 222 1 1221 344433
Q ss_pred HHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCHHHHHHH
Q 006836 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDEDFNQT 367 (629)
Q Consensus 290 ~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~--IvGfPGETeedf~eT 367 (629)
+.. +....+. + ...+++.. +.|+- ..+.++++.++++ |..+...+ ..+ |--|.+-+.+.
T Consensus 99 ~~~--v~~A~~~-G-vd~irif~-~lnd~-----------~n~~~~v~~ak~~--G~~v~~~i~~t~~-p~~~~~~~~~~ 159 (448)
T PRK12331 99 ESF--VQKSVEN-G-IDIIRIFD-ALNDV-----------RNLETAVKATKKA--GGHAQVAISYTTS-PVHTIDYFVKL 159 (448)
T ss_pred HHH--HHHHHHC-C-CCEEEEEE-ecCcH-----------HHHHHHHHHHHHc--CCeEEEEEEeecC-CCCCHHHHHHH
Confidence 322 2222333 2 45555544 34432 2366688889988 87654433 333 66678888888
Q ss_pred HHHHHhcCCCeEEE
Q 006836 368 VNLIKEYKFPQVHI 381 (629)
Q Consensus 368 l~fl~~l~~d~v~i 381 (629)
++.+.+.+.+.+.+
T Consensus 160 a~~l~~~Gad~I~i 173 (448)
T PRK12331 160 AKEMQEMGADSICI 173 (448)
T ss_pred HHHHHHcCCCEEEE
Confidence 88888888887665
No 274
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=39.26 E-value=4e+02 Score=26.81 Aligned_cols=133 Identities=11% Similarity=0.083 Sum_probs=68.6
Q ss_pred HHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcc
Q 006836 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 305 (629)
Q Consensus 226 Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~ 305 (629)
.++-++.+.+.|++++.+.+-+...-+. ....++++++.+... ..+.++ -..... +. +..++.. + +
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~~---~~~~~~i~~i~~~~~----~~l~v~-GGi~~~-~~---~~~~~~~-G-a 99 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEGE---RKNAEAIEKIIEAVG----VPVQLG-GGIRSA-ED---AASLLDL-G-V 99 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcCC---cccHHHHHHHHHHcC----CcEEEc-CCcCCH-HH---HHHHHHc-C-C
Confidence 4455666677899999999765432222 234677777776542 233332 111111 22 2333332 2 6
Q ss_pred cccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEE------EcCCCCCHHHHHHHHHHHHhcCCCeE
Q 006836 306 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII------CGFPGETDEDFNQTVNLIKEYKFPQV 379 (629)
Q Consensus 306 ~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~I------vGfPGETeedf~eTl~fl~~l~~d~v 379 (629)
..+++|-....+ .+.+.++.+.+... .+.++.|+. -|.-.++..+..+.++.+.+.+++.+
T Consensus 100 ~~v~iGs~~~~~-----------~~~~~~i~~~~g~~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i 166 (241)
T PRK13585 100 DRVILGTAAVEN-----------PEIVRELSEEFGSE--RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSI 166 (241)
T ss_pred CEEEEChHHhhC-----------hHHHHHHHHHhCCC--cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEE
Confidence 677876554321 22233333332111 233444432 24333343466777777888999988
Q ss_pred EEEece
Q 006836 380 HISQFY 385 (629)
Q Consensus 380 ~i~~ys 385 (629)
++....
T Consensus 167 ~~~~~~ 172 (241)
T PRK13585 167 LFTNVD 172 (241)
T ss_pred EEEeec
Confidence 876653
No 275
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=38.40 E-value=1.6e+02 Score=25.10 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 329 ~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
.+.+.+..+.+++..|+..+...++-+ +.-++.+.++-+.+.+.+.+.+.++.+.+|.-.
T Consensus 16 ~~~~~~~~~~l~~~~~~~~v~~a~~~~----~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~ 75 (101)
T cd03409 16 KKDIEAQAHNLAESLPDFPYYVGFQSG----LGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEV 75 (101)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECC----CCCCHHHHHHHHHHcCCCeEEEEeCccccChhh
Confidence 346777778888877666655555554 234577888889888999999999999987754
No 276
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=38.20 E-value=2e+02 Score=28.69 Aligned_cols=141 Identities=20% Similarity=0.207 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-----CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-----~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~e 294 (629)
..+.++.+++++.+.+.|+.-|-+-++-+..+..... .++..+++.+.+.. ....+.+.+.+|..+..-+
T Consensus 15 ~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~---~~~plSIDT~~~~v~~~aL-- 89 (210)
T PF00809_consen 15 KFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREEN---PDVPLSIDTFNPEVAEAAL-- 89 (210)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHH---TTSEEEEEESSHHHHHHHH--
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccC---CCeEEEEECCCHHHHHHHH--
Confidence 3457888999999999999988886654333222111 24555566665411 2457888877775433221
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhhc-----------C--C----CCH----HHHHHHHHH-------HHHhCCCC
Q 006836 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-----------R--E----YTL----SDFRTVVDT-------LIELVPGM 346 (629)
Q Consensus 295 l~~l~~~~~~~~~l~IGlESgsd~vLk~M~-----------R--~----~t~----e~~~e~I~~-------lr~~~pgi 346 (629)
+. ...+.+- ..|++- +++++..+. + + .+. +-+.++++. +.++ |+
T Consensus 90 --~~--g~~~ind-~~~~~~-~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~--Gi 161 (210)
T PF00809_consen 90 --KA--GADIIND-ISGFED-DPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKA--GI 161 (210)
T ss_dssp --HH--TSSEEEE-TTTTSS-STTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHT--T-
T ss_pred --Hc--CcceEEe-cccccc-cchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHc--CC
Confidence 11 1111111 122222 455554322 1 0 111 223344444 4447 77
Q ss_pred ---EEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 347 ---QIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 347 ---~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
.+..|-.+|| +-+.++-.++++.++.+
T Consensus 162 ~~~~Ii~DPgigf-~~~~~~~~~~l~~i~~~ 191 (210)
T PF00809_consen 162 PRERIILDPGIGF-GKDPEQNLELLRNIEEL 191 (210)
T ss_dssp -GGGEEEETTTTS-STTHHHHHHHHHTHHHH
T ss_pred CHHHEeeccccCc-CCCHHHHHHHHHHHHHH
Confidence 7999999999 77777666677766665
No 277
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=38.19 E-value=4.6e+02 Score=26.84 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCccc
Q 006836 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306 (629)
Q Consensus 227 v~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~ 306 (629)
.+-++.+++.|+..|.|.-+. ...+.++++.|++. . ....+. ++|..-.+.++.+...... -+.-
T Consensus 74 ~~~i~~fa~agad~It~H~E~--------~~~~~r~i~~Ik~~-G----~kaGv~-lnP~Tp~~~i~~~l~~vD~-VllM 138 (220)
T COG0036 74 DRYIEAFAKAGADIITFHAEA--------TEHIHRTIQLIKEL-G----VKAGLV-LNPATPLEALEPVLDDVDL-VLLM 138 (220)
T ss_pred HHHHHHHHHhCCCEEEEEecc--------CcCHHHHHHHHHHc-C----CeEEEE-ECCCCCHHHHHHHHhhCCE-EEEE
Confidence 455667888899999998652 13568888888762 2 333443 6776544444333332110 0001
Q ss_pred cc--ccccCCCCHHHHHhhc
Q 006836 307 FL--HVPVQSGSDAVLSAMN 324 (629)
Q Consensus 307 ~l--~IGlESgsd~vLk~M~ 324 (629)
.+ -+|=|++.+++|++++
T Consensus 139 sVnPGfgGQ~Fi~~~l~Ki~ 158 (220)
T COG0036 139 SVNPGFGGQKFIPEVLEKIR 158 (220)
T ss_pred eECCCCcccccCHHHHHHHH
Confidence 11 2678999998887654
No 278
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=38.08 E-value=54 Score=31.74 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=40.6
Q ss_pred EecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEE
Q 006836 64 KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (629)
Q Consensus 64 ~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVV 130 (629)
-+-||+++..--+.-.+.++.. ..+.|||+|||=.+-.+..-.-++..|..+-..|.+|++
T Consensus 68 gs~gCrLD~~~La~A~~~l~~a------l~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt 128 (159)
T PF10649_consen 68 GSRGCRLDPGALAEASAALRRA------LAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLT 128 (159)
T ss_pred CCcccccCHHHHHHHHHHHHHH------HhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEE
Confidence 4679999976665555555543 235699999996554433334566677777778888765
No 279
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=37.79 E-value=2.4e+02 Score=32.30 Aligned_cols=176 Identities=13% Similarity=0.100 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (629)
.+++.+++-++.+.+.|+..|.|-| ..+. -.+....+|++.|.+.++ ....+.+..=+-..+.- ....+.+.
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkD-taGl---l~P~~~~~LV~~Lk~~~~--~~ipI~~H~Hnt~GlA~--An~laAie 223 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKD-MAAL---LKPQPAYDIVKGIKEACG--EDTRINLHCHSTTGVTL--VSLMKAIE 223 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC-CccC---CCHHHHHHHHHHHHHhCC--CCCeEEEEeCCCCCcHH--HHHHHHHH
Confidence 3899999999999999999999975 2222 223467889999987653 13344444211111111 11222222
Q ss_pred CCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-----
Q 006836 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK----- 375 (629)
Q Consensus 301 ~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~----- 375 (629)
. + +..++..+-..+ .+...-....++..++.. |... |+ +.+.+.+..+++++++
T Consensus 224 A-G-ad~vDtai~Glg--------~~aGn~atE~vv~~L~~~--g~~t------gi---Dl~~L~~i~~~~~~vr~~y~~ 282 (499)
T PRK12330 224 A-G-VDVVDTAISSMS--------LGPGHNPTESLVEMLEGT--GYTT------KL---DMDRLLKIRDHFKKVRPKYKE 282 (499)
T ss_pred c-C-CCEEEeeccccc--------ccccchhHHHHHHHHHhc--CCCC------CC---CHHHHHHHHHHHHHHHHHHhc
Confidence 2 2 677776665542 222223444455555544 3321 22 3444444444444432
Q ss_pred ----CCeEEEEecee-CCCCccccCC-CCCHHHHHHHHHHHHHHHHHhcccccCCCcEE
Q 006836 376 ----FPQVHISQFYP-RPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVE 428 (629)
Q Consensus 376 ----~d~v~i~~ysP-~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~~~~~~~~vG~~~ 428 (629)
...+....|.+ .||--+.++. |+-..-...|+.++. +.+..-...+|...
T Consensus 283 ~~~~~~~~d~~v~~~qiPGGm~snl~~Ql~~~g~~d~~~ev~---~e~~~Vr~~lG~~~ 338 (499)
T PRK12330 283 FESKTTGVETEIFKSQIPGGMLSNMESQLKQQGAGDRMDEVL---EEVPRVRKDAGYPP 338 (499)
T ss_pred ccccccCCCCccccCCCCCCchhhHHHHHHHcChhhHHHHHH---HHHHHHHHHcCCCC
Confidence 11222334444 6776666664 444443444433333 33333345556543
No 280
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=37.20 E-value=3.3e+02 Score=28.21 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeE
Q 006836 357 PGETDEDFNQTVNLIKEYKFPQV 379 (629)
Q Consensus 357 PGETeedf~eTl~fl~~l~~d~v 379 (629)
|.+..++..+.++.+++++++.+
T Consensus 122 pDlp~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 122 ADLPLEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred CCCChHHHHHHHHHHHHCCCcEE
Confidence 34455566666666666666544
No 281
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=36.89 E-value=1.6e+02 Score=32.14 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=53.0
Q ss_pred ccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 006836 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (629)
Q Consensus 305 ~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~ 382 (629)
...+.+|.+-.+ ++.-...++.+++.+.++.++++ |..+..-+=.=+-.+..+.+.+.++++.++++|.+-+.
T Consensus 27 ADaVY~G~~~~~---~R~~a~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~ 99 (347)
T COG0826 27 ADAVYIGEKEFG---LRRRALNFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVA 99 (347)
T ss_pred CCEEEeCCcccc---cccccccCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEc
Confidence 578889988333 33333458999999999999999 87544333222234556679999999999999988775
No 282
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.72 E-value=13 Score=34.59 Aligned_cols=17 Identities=35% Similarity=0.942 Sum_probs=14.8
Q ss_pred EeCCCCCCCCCCCccCc
Q 006836 197 PINVGCLGACTYCKTKH 213 (629)
Q Consensus 197 ~isrGCp~~CsFC~ip~ 213 (629)
+..+||-++|+||.+..
T Consensus 75 KFADG~GH~C~YCq~r~ 91 (169)
T KOG3799|consen 75 KFADGCGHNCSYCQTRF 91 (169)
T ss_pred ccccccCcccchhhhhH
Confidence 57899999999998863
No 283
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=36.67 E-value=1.3e+02 Score=28.51 Aligned_cols=65 Identities=22% Similarity=0.210 Sum_probs=46.9
Q ss_pred ceEEEEecCcccC-hhhHHHHHHHHHhcCceeeCC---------------------CCCCCEEEEeecccccchHHHHHH
Q 006836 59 ETIYMKTFGCSHN-QSDSEYMAGQLSAFGYALTDN---------------------SEEADIWLINTCTVKSPSQSAMDT 116 (629)
Q Consensus 59 ~~v~i~TlGC~~N-~~dse~m~~~L~~~G~~~~~~---------------------~~~ADlviINTCtv~~~ae~~~~~ 116 (629)
++|++ .|++-| .-+|-++...|.+.||++.+- ++.-|+|-| |+.+ +.+..
T Consensus 17 K~IAv--VG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdv----FR~~--e~~~~ 88 (140)
T COG1832 17 KTIAV--VGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDV----FRRS--EAAPE 88 (140)
T ss_pred ceEEE--EecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEE----ecCh--hhhHH
Confidence 44444 578887 568888999999999998652 456788777 5543 34677
Q ss_pred HHHHHhhCCCCEEEE
Q 006836 117 LIAKCKSAKKPLVVA 131 (629)
Q Consensus 117 ~ir~~k~~~~~VVVg 131 (629)
+++++-+.+++++-.
T Consensus 89 i~~eal~~~~kv~W~ 103 (140)
T COG1832 89 VAREALEKGAKVVWL 103 (140)
T ss_pred HHHHHHhhCCCeEEE
Confidence 788877777877764
No 284
>PRK10812 putative DNAse; Provisional
Probab=36.63 E-value=1.5e+02 Score=30.91 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcch--hHHHHHHHHHH
Q 006836 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI--LEHLKEIAEVL 299 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i--~~~l~el~~l~ 299 (629)
..++++++++ +.|+..++.+|.+... .... .++.+..+ .....+| +||..+ ...++++.+++
T Consensus 21 d~~~vl~~a~---~~gv~~~~~~~~~~~~--------~~~~-~~l~~~~~---~v~~~~G-iHP~~~~~~~~~~~l~~~~ 84 (265)
T PRK10812 21 DVDDVLAKAA---ARDVKFCLAVATTLPG--------YRHM-RDLVGERD---NVVFSCG-VHPLNQDEPYDVEELRRLA 84 (265)
T ss_pred CHHHHHHHHH---HcCCCEEEEeCCCHHH--------HHHH-HHHHhhCC---CeEEEEE-eCCCCCCChhHHHHHHHHh
Confidence 5667766654 5699888877654322 2222 33344343 2445666 788765 23445565555
Q ss_pred hCCCccccc-ccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC
Q 006836 300 RHPCVYSFL-HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (629)
Q Consensus 300 ~~~~~~~~l-~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~ 376 (629)
.++. +..| .+|+.-.-+. -.+..-.+-|...++.+++. +..+..+.- +...++++.+++.+.
T Consensus 85 ~~~~-vvaIGEiGLD~~~~~----~~~~~Q~~vf~~ql~lA~e~--~~Pv~iH~r--------~a~~~~l~iL~~~~~ 147 (265)
T PRK10812 85 AEEG-VVAMGETGLDYYYTP----ETKVRQQESFRHHIQIGREL--NKPVIVHTR--------DARADTLAILREEKV 147 (265)
T ss_pred cCCC-EEEEEeeecCcCCCC----CCHHHHHHHHHHHHHHHHHh--CCCeEEEee--------CchHHHHHHHHhhcC
Confidence 5544 3455 6677643110 00111234577788888888 776665532 123467777776543
No 285
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=36.19 E-value=4.9e+02 Score=26.66 Aligned_cols=152 Identities=7% Similarity=0.066 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEE--eecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L--~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
+-+...+-+|++.+.+.|+..+.+ .|.+ |-+.+.- =+..++.+... -...+++...+|.... +.+
T Consensus 21 ~ad~~~l~~el~~l~~~g~d~lHiDVMDG~---FVPNitf-Gp~~i~~i~~~----~~~DvHLMv~~P~~~i---~~~-- 87 (228)
T PRK08091 21 ASNWLKFNETLTTLSENQLRLLHFDIADGQ---FSPFFTV-GAIAIKQFPTH----CFKDVHLMVRDQFEVA---KAC-- 87 (228)
T ss_pred hcCHHHHHHHHHHHHHCCCCEEEEeccCCC---cCCcccc-CHHHHHHhCCC----CCEEEEeccCCHHHHH---HHH--
Confidence 445678899999999999887665 3322 2221100 04566666432 2345666545664322 222
Q ss_pred HHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d 377 (629)
.+. + +..+.+-+|+.. +..+.++++|+. |+.+.+.+.+. |+-..++++..++. +|
T Consensus 88 -~~a-G-ad~It~H~Ea~~--------------~~~~~l~~Ik~~--g~~~kaGlaln-P~Tp~~~i~~~l~~-----vD 142 (228)
T PRK08091 88 -VAA-G-ADIVTLQVEQTH--------------DLALTIEWLAKQ--KTTVLIGLCLC-PETPISLLEPYLDQ-----ID 142 (228)
T ss_pred -HHh-C-CCEEEEcccCcc--------------cHHHHHHHHHHC--CCCceEEEEEC-CCCCHHHHHHHHhh-----cC
Confidence 222 2 567777788642 356778999999 98667788877 77667776655543 45
Q ss_pred eEEEEeceeCCCCccccCCCCCHHHHHHHHHHHHHHHH
Q 006836 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415 (629)
Q Consensus 378 ~v~i~~ysP~PGTpa~~~~~v~~~~~~~R~~~L~~l~~ 415 (629)
.+- .++..||---..+ .+ ..-+|.++++++..
T Consensus 143 ~VL--iMtV~PGfgGQ~f--~~--~~l~KI~~lr~~~~ 174 (228)
T PRK08091 143 LIQ--ILTLDPRTGTKAP--SD--LILDRVIQVENRLG 174 (228)
T ss_pred EEE--EEEECCCCCCccc--cH--HHHHHHHHHHHHHH
Confidence 444 4556667543322 12 23344555555544
No 286
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=36.10 E-value=1.4e+02 Score=26.59 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=43.8
Q ss_pred EEecCcccChhhHHHHHHHHHhcCceeeCC------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEE-
Q 006836 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV- 129 (629)
Q Consensus 63 i~TlGC~~N~~dse~m~~~L~~~G~~~~~~------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV- 129 (629)
|.-+||..+..=.+++...|...|...... ..+-|++++=| .... ...+.+.++.+|++|.+||
T Consensus 3 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS--~sG~-t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 3 VVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAIS--NSGE-TDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred EEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEe--CCCC-CHHHHHHHHHHHHCCCeEEE
Confidence 455677788888889999998888654211 23457777732 3222 2457788899999998766
Q ss_pred EEC
Q 006836 130 VAG 132 (629)
Q Consensus 130 VgG 132 (629)
+++
T Consensus 80 iT~ 82 (128)
T cd05014 80 ITG 82 (128)
T ss_pred EeC
Confidence 444
No 287
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=35.82 E-value=4.2e+02 Score=25.78 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=68.6
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
.|..+++++++-++.+.+.|++-|.+.-.+ ..-.+.++.+.+..+ ...+-.+.+. ..+.++...
T Consensus 10 ~r~~~~~~~~~~~~~l~~~G~~~vev~~~~---------~~~~~~i~~l~~~~~---~~~iGag~v~---~~~~~~~a~- 73 (190)
T cd00452 10 LRGDDAEDALALAEALIEGGIRAIEITLRT---------PGALEAIRALRKEFP---EALIGAGTVL---TPEQADAAI- 73 (190)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHHCC---CCEEEEEeCC---CHHHHHHHH-
Confidence 355679999999999999999998886421 123567888877653 2233333332 123332222
Q ss_pred HHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d 377 (629)
..+ ..++|.|-. + .+.++..++. ++ .+|+|.- |.++..+.+ +.+.|
T Consensus 74 --~~G--a~~i~~p~~--~----------------~~~~~~~~~~--~~----~~i~gv~--t~~e~~~A~----~~Gad 119 (190)
T cd00452 74 --AAG--AQFIVSPGL--D----------------PEVVKAANRA--GI----PLLPGVA--TPTEIMQAL----ELGAD 119 (190)
T ss_pred --HcC--CCEEEcCCC--C----------------HHHHHHHHHc--CC----cEECCcC--CHHHHHHHH----HCCCC
Confidence 222 567775521 1 2355555555 54 4567764 666655543 58999
Q ss_pred eEEEEe
Q 006836 378 QVHISQ 383 (629)
Q Consensus 378 ~v~i~~ 383 (629)
.+.+|+
T Consensus 120 ~i~~~p 125 (190)
T cd00452 120 IVKLFP 125 (190)
T ss_pred EEEEcC
Confidence 999864
No 288
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=34.36 E-value=1.6e+02 Score=26.72 Aligned_cols=60 Identities=7% Similarity=0.099 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEE-cCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccc
Q 006836 329 LSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (629)
Q Consensus 329 ~e~~~e~I~~lr~~~pgi~i~td~Iv-GfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~ 393 (629)
.+.+.+..+.+++..|+..+.+.|+= +.| ++.+.++.+.+.+...+.+.||.-.+|--..
T Consensus 17 ~~~~~~~~~~l~~~~~~~~v~~afle~~~P-----~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~ 77 (126)
T PRK00923 17 KEVVTKIAEKIKEKHPFYIVEVGFMEFNEP-----TIPEALKKLIGTGADKIIVVPVFLAHGVHTK 77 (126)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEEEcCCC-----CHHHHHHHHHHcCCCEEEEEchhhccCcccc
Confidence 35777788888887677777766663 444 5888999999999999999999999987543
No 289
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=34.29 E-value=3.3e+02 Score=29.46 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (629)
.++++++++++.+++.|++.+.+- + |.+. ..-.+.++++.+.++ ....+++. .|-..-.+...++.+.+.
T Consensus 137 ~~~e~~~~~a~~~~~~Gf~~~Kik---v---g~~~-~~d~~~v~~vRe~~G--~~~~l~vD-aN~~~~~~~A~~~~~~l~ 206 (352)
T cd03328 137 YDDDRLREQLSGWVAQGIPRVKMK---I---GRDP-RRDPDRVAAARRAIG--PDAELFVD-ANGAYSRKQALALARAFA 206 (352)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEee---c---CCCH-HHHHHHHHHHHHHcC--CCCeEEEE-CCCCCCHHHHHHHHHHHH
Confidence 478999999999999999988873 1 1110 112577888888775 45677776 333222222222333333
Q ss_pred CCCcccccccccCCCCHHHHHhhcCC
Q 006836 301 HPCVYSFLHVPVQSGSDAVLSAMNRE 326 (629)
Q Consensus 301 ~~~~~~~l~IGlESgsd~vLk~M~R~ 326 (629)
..+ ..++.=|+...+-+.++.+++.
T Consensus 207 ~~~-~~~~EeP~~~~d~~~~~~l~~~ 231 (352)
T cd03328 207 DEG-VTWFEEPVSSDDLAGLRLVRER 231 (352)
T ss_pred HhC-cchhhCCCChhhHHHHHHHHhh
Confidence 322 3566667766665666555443
No 290
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.26 E-value=5.5e+02 Score=26.67 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=13.7
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHh
Q 006836 320 LSAMNREYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 320 Lk~M~R~~t~e~~~e~I~~lr~~ 342 (629)
.+.++.|.+.+++.+.++.+|+.
T Consensus 64 ~~AL~~G~~~~~~~~~~~~~r~~ 86 (258)
T PRK13111 64 LRALAAGVTLADVFELVREIREK 86 (258)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhc
Confidence 44555566666666666666643
No 291
>PRK09271 flavodoxin; Provisional
Probab=33.93 E-value=1.1e+02 Score=29.04 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCceee-------------CCCCCCCEEEEeecccccch-HHHHHHHHHHHhh---CCCCEEEECcc
Q 006836 75 SEYMAGQLSAFGYALT-------------DNSEEADIWLINTCTVKSPS-QSAMDTLIAKCKS---AKKPLVVAGCV 134 (629)
Q Consensus 75 se~m~~~L~~~G~~~~-------------~~~~~ADlviINTCtv~~~a-e~~~~~~ir~~k~---~~~~VVVgGc~ 134 (629)
.+.|+..|...|+++. .+..++|+++|-|.|.-... ...+...+..++. .++++.+=|.+
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 18 AREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred HHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 5667777888898651 12235799999887764221 1234444444433 45555554543
No 292
>PLN02540 methylenetetrahydrofolate reductase
Probab=33.91 E-value=4.1e+02 Score=31.05 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc----C--CCHHHHHHHHHHhC
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----G--VNLPILLNAIVAEL 270 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~----~--~~l~eLL~~L~~~i 270 (629)
|.++.++|.+.+..+.+.|+++|..+..|...-+... + ....+|++.|.+..
T Consensus 68 rd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~ 125 (565)
T PLN02540 68 TNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKY 125 (565)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhC
Confidence 3466788999999999999999976655655433211 0 24678888887643
No 293
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=33.73 E-value=7.7e+02 Score=28.14 Aligned_cols=50 Identities=12% Similarity=0.002 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCC
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~--yg~d~~~~l~eLL~~L~~~i~ 271 (629)
...++++.-+..+-+.|+..|-+.|.-++. |+. ..++-.+.|+.+.+.++
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rf-l~edpwerlr~~r~~~~ 83 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRF-LNEDPWERLRTLKKGLP 83 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcc-cCCCHHHHHHHHHHhCC
Confidence 567777777777777888888877653333 221 12344667777777665
No 294
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=33.48 E-value=5e+02 Score=27.97 Aligned_cols=140 Identities=16% Similarity=0.216 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEe--ecCCCCCCCCc--CCCH----HHHHHHHHHhCCCCCCceEEEeecCCcchhHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLS--SEDTGAYGRDI--GVNL----PILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~--g~d~~~yg~d~--~~~l----~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~ 291 (629)
.-|+++-+..++.+.+.|++.+-|+ .+|....|-.. +..| .+|++++.+ +. ..+-++-++...+.
T Consensus 104 a~~~~~dl~~L~~~~~~GvR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~-Lg----IiiDlSH~s~kt~~-- 176 (313)
T COG2355 104 AEPLGDDLDKLELFHALGVRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNE-LG----IIIDLSHLSDKTFW-- 176 (313)
T ss_pred cccccccHHHHHHHHHhCceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHh-cC----CEEEecccCCccHH--
Confidence 3567777888999999999998877 34444333221 1122 455655543 32 23444323332222
Q ss_pred HHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC----C--CHHHHH
Q 006836 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG----E--TDEDFN 365 (629)
Q Consensus 292 l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG----E--Teedf~ 365 (629)
+.+++-+.|-+ .-+.+.+.|..-.|+.+-++ ++.+++. |=.|...++..|-. . |.+|+.
T Consensus 177 --Dvl~~s~~Pvi-------aSHSN~~al~~h~RNl~D~q----lkaI~~~--gGvIgv~~~~~fl~~~~~~~atldd~v 241 (313)
T COG2355 177 --DVLDLSKAPVV-------ASHSNARALVDHPRNLSDEQ----LKAIAET--GGVIGVNFIPAFLRPGGAARATLDDLV 241 (313)
T ss_pred --HHHhccCCceE-------EecCCchhccCCCCCCCHHH----HHHHHhc--CCEEEEEeehhhccCCCCCCCCHHHHH
Confidence 23333333322 33667778888888887665 5566666 77777787777755 3 899999
Q ss_pred HHHHHHHhc-CCCeEEE
Q 006836 366 QTVNLIKEY-KFPQVHI 381 (629)
Q Consensus 366 eTl~fl~~l-~~d~v~i 381 (629)
+.++.+.++ +.+++.+
T Consensus 242 ~hI~h~v~~~G~dhVgl 258 (313)
T COG2355 242 RHIDHFVELVGIDHVGL 258 (313)
T ss_pred HHHHHHHHhcCcceeEe
Confidence 999887776 7787776
No 295
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=33.18 E-value=3.6e+02 Score=30.94 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCC-
Q 006836 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP- 302 (629)
Q Consensus 224 e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~- 302 (629)
+.|++.++.+.+.|+.-|-+-+.-+ ++....+..+++.+.+.. ...+.+.+.+|..+.. .++.+
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st----~p~~~~v~~~V~~l~~~~----~~pISIDT~~~~v~ea-------AL~aGA 229 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF----DDDPDVVKEKVKTALDAL----DSPVIADTPTLDELYE-------ALKAGA 229 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC----CCcHHHHHHHHHHHHhhC----CCcEEEeCCCHHHHHH-------HHHcCC
Confidence 8899999999999998777754322 111123566666665532 3567777666643322 12211
Q ss_pred CcccccccccCCC-CHHHHHhhcC------------CCCHHHHHHHHHHHHHhCCCC-EEEEEEEEcCCCCCHHHHHHHH
Q 006836 303 CVYSFLHVPVQSG-SDAVLSAMNR------------EYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGETDEDFNQTV 368 (629)
Q Consensus 303 ~~~~~l~IGlESg-sd~vLk~M~R------------~~t~e~~~e~I~~lr~~~pgi-~i~td~IvGfPGETeedf~eTl 368 (629)
.+.+ .+..+ .++++..+.+ ....+.+.+.++.++++ |+ .+..|=++|+++. .+.+++
T Consensus 230 diIN----sVs~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~--Gi~~IIlDPglg~~~~---~l~~sL 300 (499)
T TIGR00284 230 SGVI----MPDVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTS--GYSKVAADPSLSPPLL---GLLESI 300 (499)
T ss_pred CEEE----ECCccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHC--CCCcEEEeCCCCcchH---HHHHHH
Confidence 1112 12111 1233221111 12347788999999999 98 7888989997432 366666
Q ss_pred HHHHh
Q 006836 369 NLIKE 373 (629)
Q Consensus 369 ~fl~~ 373 (629)
+.++.
T Consensus 301 ~~l~~ 305 (499)
T TIGR00284 301 IRFRR 305 (499)
T ss_pred HHHHH
Confidence 66653
No 296
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=32.90 E-value=1.5e+02 Score=28.69 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 006836 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (629)
Q Consensus 329 ~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ 383 (629)
.+...++.+.+++.+|++.+....- | ..++++-++.++.+++.++|.+.+..
T Consensus 58 ~~~~~~~~~~l~~~yP~l~ivg~~~-g--~f~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 58 EEVLEKAAANLRRRYPGLRIVGYHH-G--YFDEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecC-C--CCChhhHHHHHHHHHHcCCCEEEEEC
Confidence 3455567888999999988754332 2 12788889999999999999888763
No 297
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=32.45 E-value=2.7e+02 Score=25.90 Aligned_cols=50 Identities=28% Similarity=0.502 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEc--CCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccc
Q 006836 328 TLSDFRTVVDTLIELVPGMQIATDIICG--FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (629)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi~i~td~IvG--fPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~ 393 (629)
+.+.+.++++.+++. +.. ..-+|+| .|.+ ++ +.+++++++.+. .|||+..
T Consensus 66 ~~~~~~~~~~~L~~~--g~~-~i~vivGG~~~~~---~~----~~l~~~Gvd~~~------~~gt~~~ 117 (132)
T TIGR00640 66 HLTLVPALRKELDKL--GRP-DILVVVGGVIPPQ---DF----DELKEMGVAEIF------GPGTPIP 117 (132)
T ss_pred hHHHHHHHHHHHHhc--CCC-CCEEEEeCCCChH---hH----HHHHHCCCCEEE------CCCCCHH
Confidence 345667888889887 542 2346777 5533 33 237789987543 5788754
No 298
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=32.32 E-value=88 Score=32.27 Aligned_cols=67 Identities=25% Similarity=0.377 Sum_probs=41.0
Q ss_pred cCcccChhhH-HHHHHHHHhcC--c--eeeC---CCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEE-EECcccC
Q 006836 66 FGCSHNQSDS-EYMAGQLSAFG--Y--ALTD---NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCVPQ 136 (629)
Q Consensus 66 lGC~~N~~ds-e~m~~~L~~~G--~--~~~~---~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV-VgGc~a~ 136 (629)
-||.|+..|. |++...|...- | ..++ .++ .|+++|- =+|.+ +.-.+.++++|++.+.|| +|-|.++
T Consensus 15 ~GC~~slldl~E~L~dll~~~div~~~~l~D~keiPE-vDValVE-GsV~~---ee~lE~v~ElRekakivVA~GsCA~~ 89 (247)
T COG1941 15 SGCHMSLLDLYEKLLDLLEDADIVYCPTLVDEKEIPE-VDVALVE-GSVCD---EEELELVKELREKAKIVVALGSCAVT 89 (247)
T ss_pred cchHHHHHhHHHHHHHhhhhhcEEEeecccccccCCc-ccEEEEe-cccCc---HHHHHHHHHHHHhCcEEEEEecchhc
Confidence 4899988886 45555555331 1 1111 244 8999994 35552 345677888877655443 7888766
Q ss_pred C
Q 006836 137 G 137 (629)
Q Consensus 137 ~ 137 (629)
.
T Consensus 90 G 90 (247)
T COG1941 90 G 90 (247)
T ss_pred C
Confidence 4
No 299
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.08 E-value=2.1e+02 Score=26.26 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEEEEEcC-------CCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc
Q 006836 331 DFRTVVDTLIELVPGMQIATDIICGF-------PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (629)
Q Consensus 331 ~~~e~I~~lr~~~pgi~i~td~IvGf-------PGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTp 391 (629)
.+....+.+++.+|+..+..-|+-.. .|.....+.+.++-+.+.+..++.+.++...||-.
T Consensus 18 ~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e 85 (127)
T cd03412 18 TIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHIIPGEE 85 (127)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeECcHH
Confidence 45555555666666666655554200 01223345666666667777777777777777643
No 300
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=31.96 E-value=1.3e+02 Score=31.04 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 006836 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i 381 (629)
.+.+++...++.+.+..|...+..|+=.|+ |++.++..+++..+.+.+.+-+++
T Consensus 55 vtl~em~~~~~~I~r~~~~~pviaD~~~G~-g~~~~~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 55 YPVNDVPYHVRAVRRGAPLALIVADLPFGA-YGAPTAAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEeCCCCC-CcCHHHHHHHHHHHHHcCCcEEEE
Confidence 688999999999999877788899999998 568788888888777899887776
No 301
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=31.89 E-value=1.7e+02 Score=32.53 Aligned_cols=46 Identities=26% Similarity=0.326 Sum_probs=34.6
Q ss_pred EEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEecccccccc
Q 006836 443 VGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDK 491 (629)
Q Consensus 443 ~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~~~~~~ 491 (629)
+|+. ....|+|++ .++|+.|+|+|++..+.+..|++++..+.....
T Consensus 8 v~~~-~~~~vfV~~--~lpGe~v~~~i~~~~~~~~~~~~~~i~~~S~~R 53 (431)
T TIGR00479 8 VARF-NGKVVFVPN--ALPGEKVEVRVTKVKRQYALARVKKIREPSPER 53 (431)
T ss_pred EEEE-CCEEEEeCC--CCCCCEEEEEEEEecCceeEEEeeeecCCCcCc
Confidence 4665 345777763 578999999999988888899998876554443
No 302
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=31.58 E-value=5.3e+02 Score=25.65 Aligned_cols=135 Identities=10% Similarity=0.126 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCc
Q 006836 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (629)
Q Consensus 225 ~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (629)
+.++-++.+.+.|++++++.+.|-..-|.+ .-.++++++.+... ..+.++ -.... .+ ++..++..+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~---~~~~~i~~i~~~~~----~pi~~g-gGI~~-~e---d~~~~~~~G-- 94 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGP---VNLPVIKKIVRETG----VPVQVG-GGIRS-LE---DVEKLLDLG-- 94 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCC---CcHHHHHHHHHhcC----CCEEEe-CCcCC-HH---HHHHHHHcC--
Confidence 344455556778999999997655433432 22577888876532 233332 11111 12 233333322
Q ss_pred ccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCCCCHHHHHHHHHHHHhcCCCe
Q 006836 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC------GFPGETDEDFNQTVNLIKEYKFPQ 378 (629)
Q Consensus 305 ~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~Iv------GfPGETeedf~eTl~fl~~l~~d~ 378 (629)
+..+-+|-.... +.+.+.++++.+... .+.+..|+-- |.-..+..+..+.++.+.+.+++.
T Consensus 95 a~~vvlgs~~l~-----------d~~~~~~~~~~~g~~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ 161 (230)
T TIGR00007 95 VDRVIIGTAAVE-----------NPDLVKELLKEYGPE--RIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEG 161 (230)
T ss_pred CCEEEEChHHhh-----------CHHHHHHHHHHhCCC--cEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCE
Confidence 445544433222 134455555544311 3555566442 222223345567778888899998
Q ss_pred EEEEecee
Q 006836 379 VHISQFYP 386 (629)
Q Consensus 379 v~i~~ysP 386 (629)
+.+...+.
T Consensus 162 ii~~~~~~ 169 (230)
T TIGR00007 162 IIYTDISR 169 (230)
T ss_pred EEEEeecC
Confidence 88765543
No 303
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=31.54 E-value=3.3e+02 Score=27.58 Aligned_cols=131 Identities=13% Similarity=0.093 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee-cCCcchhHHHHHHHHHHhCC
Q 006836 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFILEHLKEIAEVLRHP 302 (629)
Q Consensus 224 e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~-~~p~~i~~~l~el~~l~~~~ 302 (629)
.+.++-++.+.+.|++++++.|-|-. .|.+ .-.++++.+.+... ..+.++- ++. ++.+.+++..+
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~---~n~~~i~~i~~~~~----~~v~vgGGir~------~edv~~~l~~G 100 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAI-MGRG---DNDEAIRELAAAWP----LGLWVDGGIRS------LENAQEWLKRG 100 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCccc-cCCC---ccHHHHHHHHHhCC----CCEEEecCcCC------HHHHHHHHHcC
Confidence 35566777777889999999987643 2432 33678888877542 1233331 111 12234444433
Q ss_pred CcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC--CCCHHHHHHHHHHHHhcCCCeEE
Q 006836 303 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP--GETDEDFNQTVNLIKEYKFPQVH 380 (629)
Q Consensus 303 ~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfP--GETeedf~eTl~fl~~l~~d~v~ 380 (629)
+.++-+|-++..++.++ ++++.+.+. .+.++.|+-=|.- ..+..+..+.++.+.+. ++.++
T Consensus 101 --a~~viigt~~~~~~~~~------------~~~~~~~~~--~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li 163 (233)
T cd04723 101 --ASRVIVGTETLPSDDDE------------DRLAALGEQ--RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELI 163 (233)
T ss_pred --CCeEEEcceeccchHHH------------HHHHhcCCC--CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEE
Confidence 56777888877642222 222222111 3556666642210 13556677788888888 88777
Q ss_pred EEece
Q 006836 381 ISQFY 385 (629)
Q Consensus 381 i~~ys 385 (629)
+.-..
T Consensus 164 ~~di~ 168 (233)
T cd04723 164 VLDID 168 (233)
T ss_pred EEEcC
Confidence 76553
No 304
>PLN02615 arginase
Probab=31.53 E-value=7e+02 Score=27.01 Aligned_cols=155 Identities=16% Similarity=0.270 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhH-------HHHH
Q 006836 223 VESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-------HLKE 294 (629)
Q Consensus 223 ~e~Iv~Ei~~l~~~-GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~-------~l~e 294 (629)
.+.|-+-++.+.+. +..-|+|-|++..+|+ .++.+.+..+ ....-+.|. .|++.-.+ +---
T Consensus 132 ~~~i~~~v~~ll~~~~~~Pi~LGGDHsit~~---------~iral~~~~~-~~v~vI~fD-AH~Dl~~~~~g~~~shgs~ 200 (338)
T PLN02615 132 MNVISESVKLVMEEEPLRPLVLGGDHSISYP---------VVRAVSEKLG-GPVDILHLD-AHPDIYHAFEGNKYSHASS 200 (338)
T ss_pred HHHHHHHHHHHHhcCCCceEEECcchHhhHH---------HHHHHHHHhC-CCeEEEEEe-cCcCCCCCCCCCCcCchhH
Confidence 34444445555554 5456777676665552 4555544431 023345554 33332111 1111
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhhcCC----CCHHH---HHHHHHHHHHh--CCCCEEEEEE--E-------EcC
Q 006836 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE----YTLSD---FRTVVDTLIEL--VPGMQIATDI--I-------CGF 356 (629)
Q Consensus 295 l~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~----~t~e~---~~e~I~~lr~~--~pgi~i~td~--I-------vGf 356 (629)
+..++..+..-+.+++|+++.+.+-++.+++. ++..+ ..+.++.++.. .+.+.++.|+ + +|-
T Consensus 201 ~rr~~e~~~~~~~vqiGiR~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vYiS~DiDvlDpa~aPGtgt 280 (338)
T PLN02615 201 FARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSKDREKLENLKLGEGVKGVYISIDVDCLDPAFAPGVSH 280 (338)
T ss_pred HHHHhhCCCcCcEEEEeecCCCHHHHHHHHHCCCEEEEeeHhhhHHHHHHHHHhccCCCeEEEEEeeCccCHhhCCCCCC
Confidence 33344333234788999999988777665442 12222 34455555431 1235555553 2 334
Q ss_pred C---CCCHHHHHHHHHHHHhcCCCeEEEEeceeCCC
Q 006836 357 P---GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (629)
Q Consensus 357 P---GETeedf~eTl~fl~~l~~d~v~i~~ysP~PG 389 (629)
| |=|..++.+.++.+.. ++--+-+.-++|...
T Consensus 281 pepgGLt~~e~l~il~~l~~-~vvG~DvvEv~P~~D 315 (338)
T PLN02615 281 IEPGGLSFRDVLNILHNLQG-DVVGADVVEFNPQRD 315 (338)
T ss_pred CCCCCCCHHHHHHHHHHhhC-CEEEEEEEEECCCCC
Confidence 4 4567777777776644 444455666666544
No 305
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=31.48 E-value=4.6e+02 Score=27.42 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc------CCCHHHHHHHHHHhCCCCCCceEEEeecCCcc------
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF------ 287 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~------~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~------ 287 (629)
.++...+..++..+.+.|++.|.++..|....|... .....+|++.+..... ....+.+. .+|..
T Consensus 81 d~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~--~~~~i~va-~~P~~hp~~~~ 157 (287)
T PF02219_consen 81 DRNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYG--DDFSIGVA-GYPEGHPEAPD 157 (287)
T ss_dssp TSBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHG--GGSEEEEE-E-TTHHTTCSS
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcC--cccccccc-cCCCCCccccC
Confidence 456789999999999999999988877765443311 1236788888775432 22344443 33321
Q ss_pred hhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC--EEEEEEE
Q 006836 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM--QIATDII 353 (629)
Q Consensus 288 i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi--~i~td~I 353 (629)
+...+..+.+-... + +.++- | .--|+.+.+.+.++.+++. |+ .+...++
T Consensus 158 ~~~~~~~l~~Ki~a-G-A~f~i----T---------Q~~fd~~~~~~~~~~~~~~--g~~~pIi~GI~ 208 (287)
T PF02219_consen 158 FEAELKRLKKKIDA-G-ADFII----T---------QPFFDAEAFERFLDRLREA--GIDVPIIPGIM 208 (287)
T ss_dssp HHHHHHHHHHHHHT-T-ESEEE----E---------EE-SSHHHHHHHHHHHHHT--THTSEEEEEEE
T ss_pred HHHHHHHHHHHHHC-C-CCEEe----c---------cccCCHHHHHHHHHHHHHc--CCCCcEEEEEe
Confidence 11112122211111 1 22210 0 1126778888889999988 65 5555554
No 306
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.16 E-value=2.1e+02 Score=25.22 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=43.6
Q ss_pred EEecCcccChhhHHHHHHHHHhcCceeeCC------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEE-
Q 006836 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV- 129 (629)
Q Consensus 63 i~TlGC~~N~~dse~m~~~L~~~G~~~~~~------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV- 129 (629)
|.-+||..+..=..+++..|...|...... ..+-|++++= +..... ..+.+.++.++++|.++|
T Consensus 16 i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i--S~~g~~-~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 16 IYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAI--SFSGET-KETVEAAEIAKERGAKVIA 92 (139)
T ss_pred EEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEE--eCCCCC-HHHHHHHHHHHHcCCeEEE
Confidence 344577778888888888998888654321 2344666662 333332 346777888888888765
Q ss_pred EECc
Q 006836 130 VAGC 133 (629)
Q Consensus 130 VgGc 133 (629)
+++-
T Consensus 93 iT~~ 96 (139)
T cd05013 93 ITDS 96 (139)
T ss_pred EcCC
Confidence 5554
No 307
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=31.16 E-value=4.3e+02 Score=27.76 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc------CCCHHHHHHHHHHh
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAE 269 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~------~~~l~eLL~~L~~~ 269 (629)
.++.+++.+.+..+.+.|+++|..+..|....+.+. -..-.+|++.+...
T Consensus 70 ~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~ 125 (281)
T TIGR00677 70 NMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSK 125 (281)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHh
Confidence 345578888888898999999976666665433210 02356788887654
No 308
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=30.67 E-value=1.1e+02 Score=30.38 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=32.4
Q ss_pred hHHHHHHHHH-hcCceee--CC--------CCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEE
Q 006836 74 DSEYMAGQLS-AFGYALT--DN--------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (629)
Q Consensus 74 dse~m~~~L~-~~G~~~~--~~--------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV 129 (629)
-.+.|+..|+ ..||+++ ++ .+++|++++|+|.-....+ ..++.++++-+.|..+|
T Consensus 20 ~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~-~~~~al~~~v~~Ggglv 85 (217)
T PF06283_consen 20 AKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDELTD-EQRAALRDYVENGGGLV 85 (217)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS-H-HHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcCCH-HHHHHHHHHHHcCCCEE
Confidence 4567788888 7889875 22 2689999999987211222 23444555656776555
No 309
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=29.89 E-value=4.1e+02 Score=27.23 Aligned_cols=135 Identities=10% Similarity=0.067 Sum_probs=73.0
Q ss_pred HHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCccccc
Q 006836 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFL 308 (629)
Q Consensus 229 Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l 308 (629)
-.+.+.++|-+|+.+-.+. . ...+.+-+..+.+ ....-+.+.+.+|..+. ++..+... .+..+
T Consensus 34 a~~~~~~rgr~ef~~~~e~-----~--~~~i~~e~~~~~~----~~~vivnv~~~~~ee~~----~~a~~v~~--~~d~I 96 (231)
T TIGR00736 34 ASRDIEKRGRKEFSFNLEE-----F--NSYIIEQIKKAES----RALVSVNVRFVDLEEAY----DVLLTIAE--HADII 96 (231)
T ss_pred HHHHHHHcCCcccCcCccc-----H--HHHHHHHHHHHhh----cCCEEEEEecCCHHHHH----HHHHHHhc--CCCEE
Confidence 3456778898886432111 0 0112233333321 12233444444544332 23333332 25666
Q ss_pred ccccCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEece
Q 006836 309 HVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (629)
Q Consensus 309 ~IGlESgsd~vLk~M~R---~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ys 385 (629)
.|-+=...+++.+.=.- ..+++.+.+.++.+++. ++.+..=+=.|+ +.++..+..+.+.+.+.+.+++....
T Consensus 97 diN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~---~~~~~~~~a~~l~~aGad~i~Vd~~~ 171 (231)
T TIGR00736 97 EINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC---IPLDELIDALNLVDDGFDGIHVDAMY 171 (231)
T ss_pred EEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC---CcchHHHHHHHHHHcCCCEEEEeeCC
Confidence 66665555544421110 13678888888888866 666655554444 44556677788899999999997544
No 310
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=29.72 E-value=4.2e+02 Score=27.23 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHHHHHH
Q 006836 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~~~~R 406 (629)
.+.+++.+.++.+.+.. ++.+..|+=-|| |.+..++.+|++.+.+.+..-+++--- +-|. ...+-+|.++..+|
T Consensus 52 lt~~e~~~~~~~I~~~~-~iPv~vD~d~Gy-G~~~~~v~~tv~~~~~aG~agi~IEDq--~~~~--~~~~l~~~ee~~~k 125 (238)
T PF13714_consen 52 LTLTEMLAAVRRIARAV-SIPVIVDADTGY-GNDPENVARTVRELERAGAAGINIEDQ--RCGH--GGKQLVSPEEMVAK 125 (238)
T ss_dssp S-HHHHHHHHHHHHHHS-SSEEEEE-TTTS-SSSHHHHHHHHHHHHHCT-SEEEEESB--STTT--STT-B--HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhh-cCcEEEEccccc-CchhHHHHHHHHHHHHcCCcEEEeecc--ccCC--CCCceeCHHHHHHH
Confidence 48899999999999875 799999999999 889999999999999999998888654 2231 11123678877777
Q ss_pred HHHHHHHHH
Q 006836 407 SRELTSVFE 415 (629)
Q Consensus 407 ~~~L~~l~~ 415 (629)
.+...+...
T Consensus 126 I~Aa~~a~~ 134 (238)
T PF13714_consen 126 IRAAVDARR 134 (238)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcc
Confidence 666665543
No 311
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.64 E-value=2e+02 Score=27.41 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=42.2
Q ss_pred eEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEe-----eccccc--chHHHHHHHHHHHhh--CCCCEEE
Q 006836 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-----TCTVKS--PSQSAMDTLIAKCKS--AKKPLVV 130 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviIN-----TCtv~~--~ae~~~~~~ir~~k~--~~~~VVV 130 (629)
.+.+..+|+.=. .+..|...|.. .....+|+|+|+ .+.... ...+.+.++++++++ .+++|++
T Consensus 40 ~~~~~n~g~~G~--t~~~~~~~l~~------~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv 111 (191)
T cd01836 40 GVRWRLFAKTGA--TSADLLRQLAP------LPETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVV 111 (191)
T ss_pred ceEEEEEecCCc--CHHHHHHHHHh------cccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 466778887555 45666777765 124578999983 222121 124566777888887 5678888
Q ss_pred ECcc
Q 006836 131 AGCV 134 (629)
Q Consensus 131 gGc~ 134 (629)
.+..
T Consensus 112 ~~~p 115 (191)
T cd01836 112 TAVP 115 (191)
T ss_pred ECCC
Confidence 7753
No 312
>PRK05474 xylose isomerase; Provisional
Probab=29.48 E-value=3.4e+02 Score=30.47 Aligned_cols=143 Identities=13% Similarity=0.237 Sum_probs=71.9
Q ss_pred HHHCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHHHHhCCCCCCc--eEEEe-ecCCcchh---------------HH
Q 006836 233 VIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGST--MLRIG-MTNPPFIL---------------EH 291 (629)
Q Consensus 233 l~~~GvkeI~L~g~d~~~yg~d~~---~~l~eLL~~L~~~i~~~~~~--~iri~-~~~p~~i~---------------~~ 291 (629)
+.+.|+..+.|.|.|+...|.... .+|.++++.+.+.....++. |..-. +.+|.+.. ..
T Consensus 88 ~~kLg~~~~~FHD~D~~peg~s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~Tnpd~~Vra~A~~q 167 (437)
T PRK05474 88 FTKLGVPYYCFHDVDVAPEGASLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMAGAATNPDPDVFAYAAAQ 167 (437)
T ss_pred HHHhCCCeeccCccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccCCcCCCCCHHHHHHHHHH
Confidence 566799999999999988886542 34666666666554332332 22111 12332221 00
Q ss_pred HHHHHHHHhCCCcccccccccCCCCHHHH-HhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCC-----HHHH
Q 006836 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGET-----DEDF 364 (629)
Q Consensus 292 l~el~~l~~~~~~~~~l~IGlESgsd~vL-k~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf-PGET-----eedf 364 (629)
...-.++.+.-+.-.++.=|=+-|-+..+ ..|+| -.+.+.+.++.+.++.|++.+...|.+=. |.|- .-|.
T Consensus 168 vk~alD~~~eLGge~yV~WgGREGye~~~ntD~~~--e~d~~~~~l~~v~dYa~~iGf~~~f~IEPKP~EPr~hqyd~d~ 245 (437)
T PRK05474 168 VKTALDATKRLGGENYVFWGGREGYETLLNTDLKR--EREQLARFLQMVVDYKHKIGFKGTFLIEPKPQEPTKHQYDYDA 245 (437)
T ss_pred HHHHHHHHHHhCCCeEEECCCcccccchhhcCHHH--HHHHHHHHHHHHHHHhhhcCCCceEEeccCCCCCCCccccccH
Confidence 11111111111112222222222332222 22322 24567777777777766665544444433 4442 2466
Q ss_pred HHHHHHHHhcCCC
Q 006836 365 NQTVNLIKEYKFP 377 (629)
Q Consensus 365 ~eTl~fl~~l~~d 377 (629)
.-++-|+++++.+
T Consensus 246 at~l~fl~~~gl~ 258 (437)
T PRK05474 246 ATVYGFLKQYGLE 258 (437)
T ss_pred HHHHHHHHHhCCc
Confidence 7788888888775
No 313
>PRK13774 formimidoylglutamase; Provisional
Probab=29.12 E-value=4.4e+02 Score=28.09 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchh----HHHHHHHHH
Q 006836 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL----EHLKEIAEV 298 (629)
Q Consensus 223 ~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~----~~l~el~~l 298 (629)
.+.|-+.+..+.+.|..-|+|-|++..+|| .++.+.+..+.....-+.|. .|.+.-+ ..---+..+
T Consensus 106 ~~~i~~~v~~i~~~g~~pivlGGdHsit~g---------~~~a~~~~~~~~~igvI~~D-AH~Dlr~~~~~~~g~~~~~i 175 (311)
T PRK13774 106 QKEFAMLAAKSIANHRQTFLLGGGHDIAYA---------QYLATRKVYPTQSIGVINID-AHFDTRAEQQSTSGTSFRQI 175 (311)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCchHHHHH---------HHHHHHhhcCCCceEEEEeC-CCCCCCCCCCCCCChHHHHH
Confidence 345555566667788888888887776664 23344433220012233333 2211111 000012333
Q ss_pred HhCCCcccccccccCCCC--HHHHHhhcCC----CCHHHHHH--------HHHHHHHhCCCCEEEEE--EE-------Ec
Q 006836 299 LRHPCVYSFLHVPVQSGS--DAVLSAMNRE----YTLSDFRT--------VVDTLIELVPGMQIATD--II-------CG 355 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgs--d~vLk~M~R~----~t~e~~~e--------~I~~lr~~~pgi~i~td--~I-------vG 355 (629)
+......+.+++|+++.. ++.++.+++. ++.+++.+ +++.+.+....+.++.| .+ +|
T Consensus 176 ~e~~~~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~vyvS~DiD~lDps~aPGtg 255 (311)
T PRK13774 176 LEEDENTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDVIMFTICMDVIDSAFAPGVS 255 (311)
T ss_pred HhcCCCCCEEEEeeCCCCCCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHHhcCCeEEEEEeeCCcChhhCCCCC
Confidence 332222467889999874 5555554432 35555533 44444321112554444 34 44
Q ss_pred CC---CCCHHHHHHHHHHHHhc-CCCeEEEEeceeCCC
Q 006836 356 FP---GETDEDFNQTVNLIKEY-KFPQVHISQFYPRPG 389 (629)
Q Consensus 356 fP---GETeedf~eTl~fl~~l-~~d~v~i~~ysP~PG 389 (629)
-| |=|..++.+.++.+.+. ++-.+.+.-|.|...
T Consensus 256 tP~pgGLt~~e~l~il~~l~~~~~v~g~DivE~nP~~D 293 (311)
T PRK13774 256 APAVLGLYPHTVLELAKRIIPSDKVSSVSIAEMNPTYD 293 (311)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCEEEEEEEEECCCCC
Confidence 44 45777777777776443 555566777777543
No 314
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.85 E-value=7e+02 Score=26.20 Aligned_cols=92 Identities=21% Similarity=0.270 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhC
Q 006836 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~ 301 (629)
++++++++++.+.+.|++.|.+=- |.+. ....+.++++.+.++ ...+++.. |-..-.+...++.+.+..
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~------g~~~-~~d~~~v~~lr~~~g---~~~l~vD~-n~~~~~~~A~~~~~~l~~ 202 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL------GGDL-EDDIERIRAIREAAP---DARLRVDA-NQGWTPEEAVELLRELAE 202 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe------CCCh-hhHHHHHHHHHHhCC---CCeEEEeC-CCCcCHHHHHHHHHHHHh
Confidence 689999999999999999888731 1111 234678888887653 34566653 322112222234344433
Q ss_pred CCcccccccccCCCCHHHHHhhcC
Q 006836 302 PCVYSFLHVPVQSGSDAVLSAMNR 325 (629)
Q Consensus 302 ~~~~~~l~IGlESgsd~vLk~M~R 325 (629)
.+ ..++.=|+...+-+.++.+.+
T Consensus 203 ~~-l~~iEeP~~~~d~~~~~~L~~ 225 (316)
T cd03319 203 LG-VELIEQPVPAGDDDGLAYLRD 225 (316)
T ss_pred cC-CCEEECCCCCCCHHHHHHHHh
Confidence 33 456776776555566666654
No 315
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=28.84 E-value=2.6e+02 Score=26.76 Aligned_cols=73 Identities=12% Similarity=0.223 Sum_probs=46.6
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceee-------CCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~-------~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV-V 130 (629)
++|++ +|+..+..=.+++...|...|.... ....+-|++++=|.+ ..+ ..+.+.++.+|+.|.+|| +
T Consensus 31 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~s--G~t-~~~i~~~~~ak~~g~~ii~I 105 (179)
T TIGR03127 31 KRIFV--AGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGS--GET-ESLVTVAKKAKEIGATVAAI 105 (179)
T ss_pred CEEEE--EecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCC--CCc-HHHHHHHHHHHHCCCeEEEE
Confidence 45555 5555777778888888888886543 123345777773432 222 356778888999998755 6
Q ss_pred ECcccC
Q 006836 131 AGCVPQ 136 (629)
Q Consensus 131 gGc~a~ 136 (629)
++-..+
T Consensus 106 T~~~~s 111 (179)
T TIGR03127 106 TTNPES 111 (179)
T ss_pred ECCCCC
Confidence 664433
No 316
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=28.31 E-value=2.9e+02 Score=24.30 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=38.4
Q ss_pred CceEEEEec-CcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeeccccc-ch--HHHHHHHHHHH-hhCCCCEEEEC
Q 006836 58 TETIYMKTF-GCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PS--QSAMDTLIAKC-KSAKKPLVVAG 132 (629)
Q Consensus 58 ~~~v~i~Tl-GC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~-~a--e~~~~~~ir~~-k~~~~~VVVgG 132 (629)
.+-+.+.|- ||+-..+--..+ +|. ++ +.||.|-+.||++.. |. -..+.++.++. .+.+.+||+|-
T Consensus 28 v~viaf~tCGgCpGrlvpn~~k--~lk--~~------egaeaihfasCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv~gT 97 (101)
T COG5561 28 VRVIAFITCGGCPGRLVPNQIK--QLK--GK------EGAEAIHFASCMLAFKPKCPYASAEEIAKKEIEKMGIKVVMGT 97 (101)
T ss_pred EEEEEEEEcCCCCcchhHHHHH--HHh--hc------cccceeeeeeeeeccCCCCCccCHHHHHHHHHHHhCCcEEeec
Confidence 566788888 999754433222 222 11 348999999999887 21 11223333332 34578888864
No 317
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=28.15 E-value=5.7e+02 Score=27.36 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-CcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006836 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~-d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (629)
++++++++++.+.+.|++.|.+-... .+.. +....-.+.++++.+.++ ....+++.. |-..-.+...++.+.+.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~--~~~~~~~~~~d~~~v~~ir~~~g--~~~~l~vDa-N~~~~~~~a~~~~~~l~ 213 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGG--PDSGGEDLREDLARVRAVREAVG--PDVDLMVDA-NGRWDLAEAIRLARALE 213 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC--CCcchHHHHHHHHHHHHHHHhhC--CCCEEEEEC-CCCCCHHHHHHHHHHhC
Confidence 78999999999999999988874211 0100 000123677888887764 455677763 32221222223333343
Q ss_pred CCCcccccccccCCCCHHHHHhh
Q 006836 301 HPCVYSFLHVPVQSGSDAVLSAM 323 (629)
Q Consensus 301 ~~~~~~~l~IGlESgsd~vLk~M 323 (629)
..+ ..++.-|+...+-+-++.+
T Consensus 214 ~~~-i~~iEqP~~~~~~~~~~~l 235 (357)
T cd03316 214 EYD-LFWFEEPVPPDDLEGLARL 235 (357)
T ss_pred ccC-CCeEcCCCCccCHHHHHHH
Confidence 333 4566666655444444443
No 318
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=28.04 E-value=4.2e+02 Score=23.40 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccc
Q 006836 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (629)
Q Consensus 329 ~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~ 394 (629)
.+.|.+..+.+++..| ..+.+.++=|.| ++.+.++.+.+-+...+.+.||.-.+|.-+.+
T Consensus 15 ~~~~~~l~~~l~~~~~-~~v~~~~lE~~P-----~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~ 74 (103)
T cd03413 15 NAVYAALEYVLREEDP-ANVFVGTVEGYP-----GLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHN 74 (103)
T ss_pred hhHHHHHHHHHHhcCC-CcEEEEEEcCCC-----CHHHHHHHHHHcCCCEEEEEehhheecccchh
Confidence 4567777777776633 445555553444 48888988899999999999999999997654
No 319
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=27.91 E-value=4.6e+02 Score=28.46 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (629)
.++++..++++...+.|++.|.+-.. +.+....-.+.++++.+.+. ....+++.. |-..-.+...++.+.+.
T Consensus 142 ~~~~~~~~~a~~~~~~Gf~~~Kik~~-----~~~~~~~di~~i~~vR~~~G--~~~~l~vDa-n~~~~~~~A~~~~~~l~ 213 (368)
T cd03329 142 ESPEAYADFAEECKALGYRAIKLHPW-----GPGVVRRDLKACLAVREAVG--PDMRLMHDG-AHWYSRADALRLGRALE 213 (368)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC-----CchhHHHHHHHHHHHHHHhC--CCCeEEEEC-CCCcCHHHHHHHHHHhh
Confidence 47889999999999999999988521 11000123577888887764 455677653 32221222223333333
Q ss_pred CCCcccccccccCCCCHHHHHhhc
Q 006836 301 HPCVYSFLHVPVQSGSDAVLSAMN 324 (629)
Q Consensus 301 ~~~~~~~l~IGlESgsd~vLk~M~ 324 (629)
..+ ..++.=|+...+-+.+..++
T Consensus 214 ~~~-l~~iEeP~~~~d~~~~~~l~ 236 (368)
T cd03329 214 ELG-FFWYEDPLREASISSYRWLA 236 (368)
T ss_pred hcC-CCeEeCCCCchhHHHHHHHH
Confidence 322 34555555544444444443
No 320
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=27.61 E-value=2e+02 Score=30.92 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=46.4
Q ss_pred HHHHHHHhcccccCCCcEEEEEEEEEecCCceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEe
Q 006836 410 LTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 473 (629)
Q Consensus 410 L~~l~~~~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~ 473 (629)
+.++++..+.. -..|..+.|.+..-.++.++-+|+-+.-..|.++.....+|+.++|.++++-
T Consensus 280 INDLAnAVkP~-vlpGe~l~v~iiK~GkE~~QGVgYLdDGTMiVVE~gr~~ig~~~~V~VtsvL 342 (356)
T COG4956 280 INDLANAVKPV-VLPGEELTVQIIKDGKEPGQGVGYLDDGTMIVVEEGRKLIGKTVQVEVTSVL 342 (356)
T ss_pred HHHHHHHhCCc-ccCCCeeEEEEeecCcccCCceEEecCCeEEEEecchhhCCCeeEEEEeehh
Confidence 44555544432 4679999998865434444668998888899998777789999999999864
No 321
>PHA01735 hypothetical protein
Probab=27.60 E-value=74 Score=26.41 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccC----CCCCHHHHHHH
Q 006836 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM----KKVPSAVVKKR 406 (629)
Q Consensus 359 ETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~----~~v~~~~~~~R 406 (629)
-|-.|+...++|+++.+++- +|.+|+|+..+ |++..+.+++|
T Consensus 30 ATtaDL~AA~d~Lk~NdItg------v~~~gspl~~La~~~P~l~~e~vq~~ 75 (76)
T PHA01735 30 ATTADLRAACDWLKSNDITG------VAVDGSPLAKLAGLMPQLTFEDVQER 75 (76)
T ss_pred ccHHHHHHHHHHHHHCCCce------eeCCCCHHHHHHhcCccCCHHHHHhc
Confidence 47889999999999998864 47899998764 56666666554
No 322
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=27.48 E-value=83 Score=27.76 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECc
Q 006836 75 SEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (629)
Q Consensus 75 se~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc 133 (629)
.+.+...-.+.|+++++.+.+||++++-.-+.-+.. . -.|++|++|+-
T Consensus 20 ~~vl~AAA~ka~l~ii~tp~dAeLviV~G~sipnd~--~---------l~GKkv~i~d~ 67 (103)
T COG3925 20 HTVLGAAAHKAGLEIIDTPNDAELVIVFGSSIPNDS--A---------LNGKKVWIGDI 67 (103)
T ss_pred HHHHHHHHHHCCCeeeCCCCcccEEEEeccccCCCc--c---------ccCceEEEecH
Confidence 345556667899999999999999999554443321 1 13678998885
No 323
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=27.38 E-value=5.9e+02 Score=27.01 Aligned_cols=105 Identities=13% Similarity=0.289 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeec-------CCcchhHHHH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 293 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~-------~p~~i~~~l~ 293 (629)
.+++++++.++..-+.|+..+|+.+ +++.+ + ...++..+.... .++++++. +|..+.+...
T Consensus 9 ~~~~~~~~~a~~AE~~Gfd~~w~~e-h~~~~--~----~~~~la~~a~~T-----~ri~lgt~v~~~~~r~P~~~A~~~a 76 (325)
T TIGR03555 9 DPITKIAYYVKLAEDNGFEYAWITD-HYNNR--N----VYSTLTLLALNT-----NTIKLGPGVTNPYTRSPAITASAIA 76 (325)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-ccCcc--C----HHHHHHHHHHhc-----CeeEEeeeeccCCCCCHHHHHHHHH
Confidence 4688999998888788999999875 43322 1 244566666543 35666541 2333333322
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHh
Q 006836 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIEL 342 (629)
Q Consensus 294 el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~--t~e~~~e~I~~lr~~ 342 (629)
.|. .+..+ ++.+|+=+|+......++... ..+.+.|.++.+++.
T Consensus 77 tLd-~ls~G----R~~lGlg~G~~~~~~~~G~~~~~~~~~~~E~v~iir~l 122 (325)
T TIGR03555 77 TLD-EISGG----RAVLGIGPGDKATFDAMGIEWVKPLTTIREAIEVIRQL 122 (325)
T ss_pred HHH-HHcCC----CEEEEecCCcHHHHHHcCCCcCchHHHHHHHHHHHHHH
Confidence 222 22222 567888888877777776542 345666777766665
No 324
>PRK14017 galactonate dehydratase; Provisional
Probab=27.11 E-value=7.7e+02 Score=26.88 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEee-cCCCCCCCCc-CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHH
Q 006836 222 TVESLVGRVRTVIADGVKEVWLSS-EDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L~g-~d~~~yg~d~-~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~ 299 (629)
++++++++++.+.+.|++.+.+=. .....++.+. ...-.+.++++.+.++ ....+++.. |...-.+...++.+.+
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g--~~~~l~vDa-N~~w~~~~A~~~~~~l 200 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVG--PEIGIGVDF-HGRVHKPMAKVLAKEL 200 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEC-CCCCCHHHHHHHHHhh
Confidence 688999999999999999988742 1111111000 0112566778877764 456777763 4322222222333333
Q ss_pred hCCCcccccccccCCCCHHHHHhhcC
Q 006836 300 RHPCVYSFLHVPVQSGSDAVLSAMNR 325 (629)
Q Consensus 300 ~~~~~~~~l~IGlESgsd~vLk~M~R 325 (629)
...+ +.++.=|+...+-+-++.+++
T Consensus 201 ~~~~-~~~iEeP~~~~d~~~~~~L~~ 225 (382)
T PRK14017 201 EPYR-PMFIEEPVLPENAEALPEIAA 225 (382)
T ss_pred cccC-CCeEECCCCcCCHHHHHHHHh
Confidence 3333 567777887766666666654
No 325
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.77 E-value=3.5e+02 Score=29.16 Aligned_cols=137 Identities=11% Similarity=0.125 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhC
Q 006836 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~ 301 (629)
++++.+++++.+.+.|++.+.+-- +. .+. ..-.+.++++.+.++ ....+++.. |...-.+....+.+.+..
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKv---g~--~~~-~~d~~~v~air~~~g--~~~~l~vDa-N~~~~~~~A~~~~~~l~~ 211 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKI---GY--PTA-DEDLAVVRSIRQAVG--DGVGLMVDY-NQSLTVPEAIERGQALDQ 211 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhc---CC--CCh-HhHHHHHHHHHHhhC--CCCEEEEeC-CCCcCHHHHHHHHHHHHc
Confidence 478899999999999998776631 10 010 112577888887765 456777763 332222222233333333
Q ss_pred CCcccccccccCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHHHhCCCCE-EEEEEE-EcCCCCCHHHHHHHH
Q 006836 302 PCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLIELVPGMQ-IATDII-CGFPGETDEDFNQTV 368 (629)
Q Consensus 302 ~~~~~~l~IGlESgsd~vLk~M~R~-----------~t~e~~~e~I~~lr~~~pgi~-i~td~I-vGfPGETeedf~eTl 368 (629)
.+ ..++.=|+...+.+.++.+.+. ++..++.+.++. . .+. +..++. +| ....+.+.+
T Consensus 212 ~~-i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~---~--~~d~i~~~~~~~G----Git~~~~ia 281 (355)
T cd03321 212 EG-LTWIEEPTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSA---G--ACDLVMPDLMKIG----GVTGWLRAS 281 (355)
T ss_pred CC-CCEEECCCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh---C--CCCeEecCHhhhC----CHHHHHHHH
Confidence 33 4678888888887777766553 244444444432 1 111 111221 22 245667778
Q ss_pred HHHHhcCCC
Q 006836 369 NLIKEYKFP 377 (629)
Q Consensus 369 ~fl~~l~~d 377 (629)
++++..++.
T Consensus 282 ~~A~~~gi~ 290 (355)
T cd03321 282 ALAEQAGIP 290 (355)
T ss_pred HHHHHcCCe
Confidence 888888765
No 326
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=26.64 E-value=91 Score=36.12 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=37.9
Q ss_pred HhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCCC
Q 006836 83 SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (629)
Q Consensus 83 ~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~~ 138 (629)
++.|..++-- .-+-+|.+-.|.=.....+.++.+++.+.++|--||++||+|-..
T Consensus 488 R~vG~PiV~G-~IPGIia~vgC~nyp~g~k~v~~iaeefl~RnyiVvttGC~Am~i 542 (772)
T COG1152 488 RNVGVPIVMG-TIPGIIAVIGCPNYPAGTKDVYKIAEEFLKRNYIVVTTGCIAMDI 542 (772)
T ss_pred hhcCCceeec-CCCeEEEEecCCCCCcchhhHHHHHHHHHHcCeEEEecchhhhhc
Confidence 3344443332 234566666887554456789999999999998899999998643
No 327
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=26.38 E-value=8.6e+02 Score=28.56 Aligned_cols=124 Identities=10% Similarity=0.079 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (629)
.+++.+++-++.+.+.|+..|.|-|- . |.-.+..+.+|++++.+.++ ..+.+..=+-..+. +....+.+.
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt--~--G~~~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~Gla--~An~laAv~ 220 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDM--A--GLLTPYAAYELVKALKEEVD----LPVQLHSHCTSGLA--PMTYLKAVE 220 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCc--C--CCcCHHHHHHHHHHHHHhCC----CeEEEEEcCCCCcH--HHHHHHHHH
Confidence 47999999999999999999999752 2 22223467888888887653 23444311111111 111222222
Q ss_pred CCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 301 ~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
. + +.+++..+-. |..+...-....++..++.. |.. ++-+.+.+.+.-++++++.
T Consensus 221 a-G-ad~vD~ai~g--------~g~~agn~~~e~vv~~L~~~--g~~---------~~idl~~l~~~s~~~~~~~ 274 (592)
T PRK09282 221 A-G-VDIIDTAISP--------LAFGTSQPPTESMVAALKGT--PYD---------TGLDLELLFEIAEYFREVR 274 (592)
T ss_pred h-C-CCEEEeeccc--------cCCCcCCHhHHHHHHHHHhC--CCC---------CccCHHHHHHHHHHHHHHH
Confidence 2 2 6777766653 44555555566666666554 322 2445666777777776664
No 328
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=25.97 E-value=6.7e+02 Score=28.34 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCc-chhHHHHHHHHHH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIAEVL 299 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~-~i~~~l~el~~l~ 299 (629)
.+++.+++-++.+.+.|+..|.|-| +.... .+....+|++.+.+.++ ..+.+. .|-+ .+. +....+.+
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~D--t~G~l--~P~~v~~lv~alk~~~~----~pi~~H-~Hnt~GlA--~AN~laAi 219 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKD--MAGIL--TPYVAYELVKRIKEAVT----VPLEVH-THATSGIA--EMTYLKAI 219 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC--CCCCC--CHHHHHHHHHHHHHhcC----CeEEEE-ecCCCCcH--HHHHHHHH
Confidence 5889999999999999999999975 32222 23467888998887653 234443 2211 111 11112222
Q ss_pred hCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006836 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 300 ~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (629)
.. + +..++..+-. |..+...-....++..++..
T Consensus 220 ea-G-ad~vD~sv~g--------lg~gaGN~~tE~lv~~L~~~ 252 (448)
T PRK12331 220 EA-G-ADIIDTAISP--------FAGGTSQPATESMVAALQDL 252 (448)
T ss_pred Hc-C-CCEEEeeccc--------cCCCcCCHhHHHHHHHHHhc
Confidence 22 2 6677766653 44444444555666666554
No 329
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=25.74 E-value=2.4e+02 Score=24.19 Aligned_cols=59 Identities=8% Similarity=0.232 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 330 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 330 e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
+.+.+..+.+++..|+..+..-++=+ +.-++.+.++.+.+.+.+.+.+.+|.-.+|.-.
T Consensus 16 ~~~~~l~~~l~~~~~~~~v~~afle~----~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~ 74 (101)
T cd03416 16 EALEALAERLRERLPGDEVELAFLEL----AEPSLAEALDELAAQGATRIVVVPLFLLAGGHV 74 (101)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEEEc----CCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccc
Confidence 46777788888877766666666533 345677788888888999999999999999865
No 330
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.70 E-value=7.2e+02 Score=25.32 Aligned_cols=134 Identities=11% Similarity=0.196 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee-cCCcchhHHHHHHHHHHhCCC
Q 006836 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFILEHLKEIAEVLRHPC 303 (629)
Q Consensus 225 ~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~-~~p~~i~~~l~el~~l~~~~~ 303 (629)
+.++.++.+.+.|+++++++|-|-. .+.+ .+ .++++++.+... . .+.++- ++. . +++..++..+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a-~~~~--~n-~~~i~~i~~~~~--~--~v~vGGGIrs---~---e~~~~~l~~G- 95 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA-EGVG--NN-EMYIKEISKIGF--D--WIQVGGGIRD---I---EKAKRLLSLD- 95 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-CCCc--ch-HHHHHHHHhhCC--C--CEEEeCCcCC---H---HHHHHHHHCC-
Confidence 4566677777899999999987643 3432 23 488888876321 1 344431 111 1 2233344332
Q ss_pred cccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC-C-CCEEEEEE-------EEcCCCCCHHHHHHHHHHHHhc
Q 006836 304 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV-P-GMQIATDI-------ICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 304 ~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~-p-gi~i~td~-------IvGfPGETeedf~eTl~fl~~l 374 (629)
+.++.+|-....+ ++- ++.+.+.+ + .+.++.|+ +-|. .+|.-+..+.++.++++
T Consensus 96 -a~kvvigt~a~~~-----------p~~----~~~~~~~~g~~~ivvslD~~~~~~v~~~gw-~~~~~~~~e~~~~l~~~ 158 (232)
T PRK13586 96 -VNALVFSTIVFTN-----------FNL----FHDIVREIGSNRVLVSIDYDNTKRVLIRGW-KEKSMEVIDGIKKVNEL 158 (232)
T ss_pred -CCEEEECchhhCC-----------HHH----HHHHHHHhCCCCEEEEEEcCCCCEEEccCC-eeCCCCHHHHHHHHHhc
Confidence 5667777666432 222 23333333 1 35666666 1122 23555777888888888
Q ss_pred CCCeEEEEeceeCCCCc
Q 006836 375 KFPQVHISQFYPRPGTP 391 (629)
Q Consensus 375 ~~d~v~i~~ysP~PGTp 391 (629)
++..+-+ .-.-+.||-
T Consensus 159 g~~~ii~-tdI~~dGt~ 174 (232)
T PRK13586 159 ELLGIIF-TYISNEGTT 174 (232)
T ss_pred CCCEEEE-ecccccccC
Confidence 8865433 334456663
No 331
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.55 E-value=71 Score=27.38 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCceeeCCCC-----CCCEEEE
Q 006836 75 SEYMAGQLSAFGYALTDNSE-----EADIWLI 101 (629)
Q Consensus 75 se~m~~~L~~~G~~~~~~~~-----~ADlviI 101 (629)
-.-+...|++.||++++... .+|.++|
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVv 41 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQDLQNVDAIVV 41 (80)
T ss_pred chHHHHHHHHCCCEEEecCCccccCCcCEEEE
Confidence 34678999999999987544 3566665
No 332
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=25.53 E-value=2e+02 Score=27.75 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 006836 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (629)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ 383 (629)
+.+...++.+.+++.+||+.+... --|+ ...++-.+.++.+.+.++|.+.+..
T Consensus 55 ~~~~~~~~~~~l~~~yp~l~i~g~-~~g~--~~~~~~~~i~~~I~~~~pdiv~vgl 107 (171)
T cd06533 55 KPEVLEKAAERLRARYPGLKIVGY-HHGY--FGPEEEEEIIERINASGADILFVGL 107 (171)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEe-cCCC--CChhhHHHHHHHHHHcCCCEEEEEC
Confidence 345556677889999999997643 2232 2344444589999999999888763
No 333
>TIGR01230 agmatinase agmatinase. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887.
Probab=25.38 E-value=7.8e+02 Score=25.55 Aligned_cols=151 Identities=13% Similarity=0.204 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhH-------HHHHHH
Q 006836 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-------HLKEIA 296 (629)
Q Consensus 224 e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~-------~l~el~ 296 (629)
+.|-+.+..+.+.|..-|.+-|++..+|+ .++.+.+..+ ...-+.|. .|++.-.+ +--.+.
T Consensus 80 ~~i~~~v~~~~~~~~~pi~lGGdHsis~~---------~i~al~~~~~--~~~vI~~D-AH~D~~~~~~g~~~~~~~~~~ 147 (275)
T TIGR01230 80 EKIQEHAEEFLEEGKFPVAIGGEHSITLP---------VIRAMAKKFG--KFAVVHFD-AHTDLRDEFDGGTLNHACPMR 147 (275)
T ss_pred HHHHHHHHHHHhcCCeEEEecCcchhhHH---------HHHHHHHhcC--CeEEEEEe-cccccccccCCCccccHhHHH
Confidence 34444445556678777887777766653 4455544332 23344443 33332111 111123
Q ss_pred HHHhCCCcccccccccCCCCHHHHHhhcCC----CCHHHHHHHHHHHHHhCC--CCEEEEEE--E-------EcCC---C
Q 006836 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNRE----YTLSDFRTVVDTLIELVP--GMQIATDI--I-------CGFP---G 358 (629)
Q Consensus 297 ~l~~~~~~~~~l~IGlESgsd~vLk~M~R~----~t~e~~~e~I~~lr~~~p--gi~i~td~--I-------vGfP---G 358 (629)
.++..+ .+.+++|+++.+++-++.+++. ++ .++.+.++.+.+... .+.++.|+ + +|.| |
T Consensus 148 ~~~~~~--~~iv~iGiR~~~~~e~~~~~~~~~~~~~-~~i~~~~~~~l~~~~~~~vyis~DiDvlDps~aPg~~~p~pgG 224 (275)
T TIGR01230 148 RVIELG--LNVVQFGIRSGFKEENDFARENNIQVLK-REVDDVIAEVKQKVGDKPVYVTIDIDVLDPAFAPGTGTPEPGG 224 (275)
T ss_pred HHhhCC--CCEEEEEeCCCChHHHHHHHHcCCEEEe-hHHHHHHHHHHHHhCCCceEEEEeccccCcccCCCCCCCCCCC
Confidence 333322 3688999999887766555432 23 444333333333222 25555543 3 1233 3
Q ss_pred CCHHHHHHHHHH-HHhcCCCeEEEEeceeCCC
Q 006836 359 ETDEDFNQTVNL-IKEYKFPQVHISQFYPRPG 389 (629)
Q Consensus 359 ETeedf~eTl~f-l~~l~~d~v~i~~ysP~PG 389 (629)
=|..++.+.+.. ++..++-.+.+.-|.|...
T Consensus 225 l~~~e~~~~~~~~~~~~~v~g~DivE~~P~~D 256 (275)
T TIGR01230 225 LTSDELINFFVRALKDDNVVGFDVVEVAPVYD 256 (275)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEEEEeCCCCC
Confidence 567777775444 3333555566677777533
No 334
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=24.93 E-value=85 Score=27.23 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=11.1
Q ss_pred EEeceeCCCCccccCCCCCHHHHH
Q 006836 381 ISQFYPRPGTPAARMKKVPSAVVK 404 (629)
Q Consensus 381 i~~ysP~PGTpa~~~~~v~~~~~~ 404 (629)
++.|.|.+|||+.+.+.+++++..
T Consensus 2 in~l~P~~Gtpl~~~~~l~~~e~l 25 (93)
T PF06968_consen 2 INFLRPIPGTPLEDPPPLSDEEFL 25 (93)
T ss_dssp EEE----TTSTTTTS----HHHHH
T ss_pred eeeEEeCCCCCCCCCCCCCHHHHH
Confidence 344999999999777777775543
No 335
>TIGR00035 asp_race aspartate racemase.
Probab=24.81 E-value=59 Score=32.88 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=46.6
Q ss_pred CCceEEEE-ecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeeccc---c----cchHHHHHHHHHHHhhCCCCE
Q 006836 57 GTETIYMK-TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV---K----SPSQSAMDTLIAKCKSAKKPL 128 (629)
Q Consensus 57 ~~~~v~i~-TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv---~----~~ae~~~~~~ir~~k~~~~~V 128 (629)
+.++|.+. |-| ...+......|++.|++++. +.....=.|..+-+ . ..+.+.+.+.++++.++|...
T Consensus 116 ~~~~VgvLaT~~----T~~s~~y~~~l~~~g~~v~~-p~~~~~~~i~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~gad~ 190 (229)
T TIGR00035 116 GVKKAGLLGTKG----TMKDGVYEREMKKHGIEIVT-PDKEEQEAIMSGIYDEVKAGNIELGRELLLKIAKELEERGAEG 190 (229)
T ss_pred CCCEEEEEecHH----HHHhHHHHHHHHHCCCEEEC-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCE
Confidence 34678887 666 67788899999999998775 33221111212111 1 224445667777777778888
Q ss_pred EEECcc
Q 006836 129 VVAGCV 134 (629)
Q Consensus 129 VVgGc~ 134 (629)
|+-||-
T Consensus 191 iILgCT 196 (229)
T TIGR00035 191 IILGCT 196 (229)
T ss_pred EEEeCc
Confidence 888984
No 336
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=24.66 E-value=5.6e+02 Score=26.59 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~ 267 (629)
-++++|+|++.+....+.|-.-+.|.+.|...||. +.+-+++|.
T Consensus 57 a~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA-----~~EQm~~L~ 100 (254)
T COG2875 57 ASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGA-----LAEQMRELE 100 (254)
T ss_pred CcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHH-----HHHHHHHHH
Confidence 46889999999999999999889999999998874 344444443
No 337
>PRK10425 DNase TatD; Provisional
Probab=24.61 E-value=6.8e+02 Score=25.88 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhH----HHHHHH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE----HLKEIA 296 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~----~l~el~ 296 (629)
...++++++++ +.|+..+..++.+... +.+ ..++.+..+ ..+..+| +||....+ .++.+.
T Consensus 15 ~d~~~vl~~a~---~~gv~~~i~~~~~~~~--------~~~-~~~l~~~~~---~v~~~~G-iHP~~~~~~~~~~~~~l~ 78 (258)
T PRK10425 15 KDRDDVVARAF---AAGVNGMLITGTNLRE--------SQQ-AQKLARQYP---SCWSTAG-VHPHDSSQWQAATEEAII 78 (258)
T ss_pred ccHHHHHHHHH---HCCCCEEEEeCCCHHH--------HHH-HHHHHHhCC---CEEEEEE-eCcCccccCCHHHHHHHH
Confidence 35666666554 5688888877643221 222 333444443 2455667 78866532 344454
Q ss_pred HHHhCCCccccc-ccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 297 EVLRHPCVYSFL-HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 297 ~l~~~~~~~~~l-~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
.++..+. +..| .+|+.-..+.- .+..-.+-|.+.++.++++ +..+..+.- +.++++++.+++.
T Consensus 79 ~~~~~~~-~vaIGEiGLDy~~~~~----~~~~Q~~vF~~ql~lA~~~--~~Pv~iH~r--------~a~~~~l~iL~~~ 142 (258)
T PRK10425 79 ELAAQPE-VVAIGECGLDFNRNFS----TPEEQERAFVAQLAIAAEL--NMPVFMHCR--------DAHERFMALLEPW 142 (258)
T ss_pred HhccCCC-EEEEeeeeeccccCCC----CHHHHHHHHHHHHHHHHHh--CCCeEEEEe--------CchHHHHHHHHHh
Confidence 5554443 3334 46665331100 0111224567777777777 665544433 2335556666653
No 338
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=24.59 E-value=6.1e+02 Score=26.98 Aligned_cols=93 Identities=15% Similarity=0.226 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHCCCcEEEE-eecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhC-
Q 006836 224 ESLVGRVRTVIADGVKEVWL-SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH- 301 (629)
Q Consensus 224 e~Iv~Ei~~l~~~GvkeI~L-~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~- 301 (629)
++++++++.+.+.|++.+.+ +|.+ .. ..-.+.++++.+.++ ....+++. .|-..-.+....+.+.+..
T Consensus 120 ~~~~~~a~~~~~~G~~~~KvKvG~~----~~---~~d~~~v~air~~~g--~~~~l~vD-aN~~w~~~~A~~~~~~l~~l 189 (320)
T PRK02714 120 EAALQQWQTLWQQGYRTFKWKIGVD----PL---EQELKIFEQLLERLP--AGAKLRLD-ANGGLSLEEAKRWLQLCDRR 189 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCC----Ch---HHHHHHHHHHHHhcC--CCCEEEEE-CCCCCCHHHHHHHHHHHhhc
Confidence 67889999999999998877 3321 00 112567888887765 46678887 3433222222223333332
Q ss_pred -CCcccccccccCCCCHHHHHhhcCC
Q 006836 302 -PCVYSFLHVPVQSGSDAVLSAMNRE 326 (629)
Q Consensus 302 -~~~~~~l~IGlESgsd~vLk~M~R~ 326 (629)
+....++.=|+...+.+-++.+++.
T Consensus 190 ~~~~i~~iEqP~~~~~~~~~~~l~~~ 215 (320)
T PRK02714 190 LSGKIEFIEQPLPPDQFDEMLQLSQD 215 (320)
T ss_pred cCCCccEEECCCCcccHHHHHHHHHh
Confidence 1114677778877777777766553
No 339
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=24.32 E-value=3.5e+02 Score=27.07 Aligned_cols=54 Identities=28% Similarity=0.359 Sum_probs=37.4
Q ss_pred CCcEEEEEEEEEecCCceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEE
Q 006836 424 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEV 481 (629)
Q Consensus 424 vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~ 481 (629)
.|...++-++..+.+| .-+++... ..++++ ...+|+.|.|+|+...+....|++
T Consensus 147 ~~e~~~v~Ie~l~~~G-~GVak~~g-~~vfV~--galpGE~V~vri~k~kk~~~~a~~ 200 (201)
T PRK12336 147 EGKTYEVEITGTGRKG-DGVAKKGK-YTIFVP--GAKKGEVVKVKIKKISGNLAFAER 200 (201)
T ss_pred cCCEEEEEEEEccCCC-ceEEEECC-EEEEeC--CCCCCCEEEEEEEEecCCceeEEe
Confidence 3566778888876544 33566544 567765 346899999999998776666654
No 340
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=24.24 E-value=85 Score=32.42 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=24.7
Q ss_pred cccChhhHHH-HHHHHHhcCceeeCCCCCCCEEEEe
Q 006836 68 CSHNQSDSEY-MAGQLSAFGYALTDNSEEADIWLIN 102 (629)
Q Consensus 68 C~~N~~dse~-m~~~L~~~G~~~~~~~~~ADlviIN 102 (629)
|...++.+|. |...|.... -.|.++++||+++|=
T Consensus 32 ~~~~~~~~e~~l~~~l~~s~-~~T~dp~eAdlF~vP 66 (302)
T PF03016_consen 32 YETSQYALEVILHEALLNSP-FRTDDPEEADLFFVP 66 (302)
T ss_pred cccccchHHHHHHHHHHhCC-cEeCCHHHCeEEEEE
Confidence 6677777765 445555444 678899999999984
No 341
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=23.81 E-value=75 Score=27.62 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=17.3
Q ss_pred EEeceeCCCCccccC-CCCCHHH
Q 006836 381 ISQFYPRPGTPAARM-KKVPSAV 402 (629)
Q Consensus 381 i~~ysP~PGTpa~~~-~~v~~~~ 402 (629)
+..|.|.||||+.+. +.+++++
T Consensus 2 in~l~P~~gTp~~~~~~~~~~~~ 24 (94)
T smart00876 2 INRLRPIEGTPLEDPPPPVSPEE 24 (94)
T ss_pred CCccccCCCCCcccCCCCCCHHH
Confidence 457899999999887 5677654
No 342
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.73 E-value=6.3e+02 Score=23.88 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC--------C------HHHHHHHHHHHHhcCCCeEEEEec
Q 006836 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGE--------T------DEDFNQTVNLIKEYKFPQVHISQF 384 (629)
Q Consensus 329 ~e~~~e~I~~lr~~~pgi~i~td~IvGfPGE--------T------eedf~eTl~fl~~l~~d~v~i~~y 384 (629)
...+.+..+.++++ |+.+.+--....... . .+.+.+.+++++.++...+.+...
T Consensus 26 ~~~~~~~~~~~~~~--gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 26 DDEAEELRRLLEDY--GLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECT
T ss_pred hHHHHHHHHHHHHc--CCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCc
Confidence 56677888888888 998665433333222 2 688999999999999998887744
No 343
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=23.70 E-value=5.7e+02 Score=26.70 Aligned_cols=53 Identities=8% Similarity=0.173 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 006836 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~ 382 (629)
.|.++..++++.+.+...| ...+|+|....+-++..+..+++++.+.+.+.+.
T Consensus 51 Lt~~Er~~~~~~~~~~~~~---~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~ 103 (288)
T cd00954 51 LSVEERKQIAEIVAEAAKG---KVTLIAHVGSLNLKESQELAKHAEELGYDAISAI 103 (288)
T ss_pred CCHHHHHHHHHHHHHHhCC---CCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3678889999988887655 3467999987888888999999999999977764
No 344
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=23.65 E-value=3.8e+02 Score=24.84 Aligned_cols=66 Identities=12% Similarity=0.286 Sum_probs=38.4
Q ss_pred eEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeeccccc--------chHHHHHHHHHHHhhCCCCEEEE
Q 006836 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS--------PSQSAMDTLIAKCKSAKKPLVVA 131 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~--------~ae~~~~~~ir~~k~~~~~VVVg 131 (629)
.+.+.+.|+.-..... +...|... . ....+|+|+|. .+.-. ...+.+.++++++++.+++||+.
T Consensus 36 ~~~v~n~g~~G~~~~~--~~~~l~~~----~-~~~~pd~v~i~-~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 36 DVTVINAGVSGDTTAG--GLARLPAL----L-AQHKPDLVILE-LGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred CeEEEecCcCCcccHH--HHHHHHHH----H-HhcCCCEEEEe-ccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4677888877554432 23333221 0 11368999983 33221 12345667788888888888876
Q ss_pred Cc
Q 006836 132 GC 133 (629)
Q Consensus 132 Gc 133 (629)
+.
T Consensus 108 ~~ 109 (177)
T cd01822 108 GM 109 (177)
T ss_pred ec
Confidence 64
No 345
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=23.40 E-value=3.7e+02 Score=26.79 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=37.6
Q ss_pred cccccccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH----HHHHHHHHHhc
Q 006836 306 SFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED----FNQTVNLIKEY 374 (629)
Q Consensus 306 ~~l~IGlESgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeed----f~eTl~fl~~l 374 (629)
..+|+-+.+|.. |+| |.+.+++.+.++.+... |++.+.+-+..+-..++.+. ++..++++.++
T Consensus 117 ~~v~lkvdtG~~-----~~R~G~~~~~~~~~~~~i~~~-~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l 184 (222)
T cd00635 117 LDVLVQVNIGGE-----ESKSGVAPEELEELLEEIAAL-PNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDEL 184 (222)
T ss_pred CcEEEEEecCCC-----CCCCCCCHHHHHHHHHHHHcC-CCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHH
Confidence 356777777722 477 57788888888887653 67766554444433444455 44444444444
No 346
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=23.21 E-value=4.5e+02 Score=27.21 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 006836 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~ 382 (629)
.|.++..++++.+.+...+ ...+|+|.-+.+.++..+..+.+++++++.+.+.
T Consensus 50 lt~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 50 LSDEEHEAVIEAVVEAVNG---RVPVIAGTGSNNTAEAIELTKRAEKAGADAALVV 102 (284)
T ss_pred CCHHHHHHHHHHHHHHhCC---CCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 3778899999998888554 2357899877888889999999999999977765
No 347
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=23.10 E-value=8.7e+02 Score=25.72 Aligned_cols=105 Identities=15% Similarity=0.312 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeec-------CCcchhHHHH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 293 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~-------~p~~i~~~l~ 293 (629)
.+++++++.++..-+.|+..+|+.+ +.+.+ +-.-++..+.... .++++++. +|..+.+...
T Consensus 11 ~~~~~~~~~a~~AE~~Gfd~vw~~e-h~~~~------~~~~~la~~aa~T-----~rI~lgt~v~~~~~r~P~~~A~~~a 78 (325)
T PRK02271 11 HPVKKIAYLAKLAEDNGFDYAWITD-HYNNR------DVYMTLAAIAAAT-----DTIKLGPGVTNPYTRHPAITASAIA 78 (325)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-ccCCC------CHHHHHHHHHHhc-----CeEEEEeeeccCCCCCHHHHHHHHH
Confidence 3689999999988888999998875 33221 2245566666543 35666541 2333333222
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHh
Q 006836 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIEL 342 (629)
Q Consensus 294 el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~--t~e~~~e~I~~lr~~ 342 (629)
.| +.+..+ ++.+|+=+|++..+..++..+ ....+.+.++.+++.
T Consensus 79 tL-d~ls~G----R~~lG~G~G~~~~~~~~G~~~~~~~~~~~E~l~ilr~l 124 (325)
T PRK02271 79 TL-DEISGG----RAVLGIGPGDKATLDALGIEWEKPLRTVKEAIEVIRKL 124 (325)
T ss_pred HH-HHHcCC----CEEEEecCCCHHHHHHcCCCcccHHHHHHHHHHHHHHH
Confidence 22 222222 567888888887788787653 346667777777765
No 348
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=22.92 E-value=3.4e+02 Score=25.95 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=47.8
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeC-------CCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~-------~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV-V 130 (629)
++|++. ||..+..=.+++...|...|..... ...+-|++++=| +...+ ..+.+.++.+++.|.+|| +
T Consensus 34 ~~I~i~--G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS--~sG~t-~~~i~~~~~ak~~g~~iI~I 108 (179)
T cd05005 34 KRIFVY--GAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAIS--GSGET-SSVVNAAEKAKKAGAKVVLI 108 (179)
T ss_pred CeEEEE--ecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEc--CCCCc-HHHHHHHHHHHHCCCeEEEE
Confidence 566655 5556677788888888888865432 123457776633 33322 356778888999998754 7
Q ss_pred ECcccCCC
Q 006836 131 AGCVPQGS 138 (629)
Q Consensus 131 gGc~a~~~ 138 (629)
++...+..
T Consensus 109 T~~~~s~l 116 (179)
T cd05005 109 TSNPDSPL 116 (179)
T ss_pred ECCCCCch
Confidence 77654433
No 349
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=22.84 E-value=9e+02 Score=26.56 Aligned_cols=141 Identities=14% Similarity=0.105 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (629)
.++++..++++.+.+.|++.+.+- ++. .+. ..-.+.++++.+.+. ....+++. .|-..-.+....+.+.+.
T Consensus 159 ~~~~~~~~~a~~~~~~Gf~~~Kik---vg~--~~~-~~di~~v~avRe~~G--~~~~l~vD-aN~~w~~~~A~~~~~~l~ 229 (385)
T cd03326 159 DDLGRLRDEMRRYLDRGYTVVKIK---IGG--APL-DEDLRRIEAALDVLG--DGARLAVD-ANGRFDLETAIAYAKALA 229 (385)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEe---CCC--CCH-HHHHHHHHHHHHhcC--CCCeEEEE-CCCCCCHHHHHHHHHHhh
Confidence 457889999999999999998873 111 110 112567788877664 44567776 333222222222333343
Q ss_pred CCCcccccccccCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHH--HhCCCCEEEEEEE-EcCCCCCHHHHHH
Q 006836 301 HPCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLI--ELVPGMQIATDII-CGFPGETDEDFNQ 366 (629)
Q Consensus 301 ~~~~~~~l~IGlESgsd~vLk~M~R~-----------~t~e~~~e~I~~lr--~~~pgi~i~td~I-vGfPGETeedf~e 366 (629)
..+ ..++.=|+...+.+-++.+.+. ++..++.+.++.=. ..+ --+..|+. +| -...+.+
T Consensus 230 ~~~-~~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~--div~~d~~~~G----Git~~~k 302 (385)
T cd03326 230 PYG-LRWYEEPGDPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDR--DVLQFDPGLSY----GLPEYLR 302 (385)
T ss_pred CcC-CCEEECCCCccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccC--CEEEeCchhhC----CHHHHHH
Confidence 333 4577778877777777777654 34445544443310 000 12333443 23 2456677
Q ss_pred HHHHHHhcCCC
Q 006836 367 TVNLIKEYKFP 377 (629)
Q Consensus 367 Tl~fl~~l~~d 377 (629)
..++++..++.
T Consensus 303 ia~lA~a~gi~ 313 (385)
T cd03326 303 MLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHcCCC
Confidence 77788888764
No 350
>PRK03739 2-isopropylmalate synthase; Validated
Probab=22.72 E-value=1e+03 Score=27.74 Aligned_cols=127 Identities=12% Similarity=0.053 Sum_probs=68.7
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh-CCCCCCceEEEeecCCcchhHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILEHLKEIA 296 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~-i~~~~~~~iri~~~~p~~i~~~l~el~ 296 (629)
-.+.+.++=++-++.|.+.|+++|-.. +...+.. =.+.++.|.+. +. .....+. .+.+.. ...++...
T Consensus 46 gv~~s~~~Ki~ia~~L~~~GV~~IE~G---fP~~s~~----e~e~v~~i~~~~~~-~~~~~i~--~l~r~~-~~di~~a~ 114 (552)
T PRK03739 46 IEPMSPERKLRMFDLLVKIGFKEIEVG---FPSASQT----DFDFVRELIEEGLI-PDDVTIQ--VLTQAR-EHLIERTF 114 (552)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEE---CCCcChH----HHHHHHHHHHhcCC-CCCCEEE--EEeccc-hhHHHHHH
Confidence 467899999999999999999999875 4444332 13677777543 10 0122332 222221 12222222
Q ss_pred HHHhCCCcccccccccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCC-EEEEEEEEcCCCC
Q 006836 297 EVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGM-QIATDIICGFPGE 359 (629)
Q Consensus 297 ~l~~~~~~~~~l~IGlESgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi-~i~td~IvGfPGE 359 (629)
+.....+ ...+|+-+ +.|+.-+ +.+++. ...+.+.++++.++++ +. ...+.+-+-|-+|
T Consensus 115 ~a~~~~~-~~~v~i~~-~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~--~~~~~~~~~~v~f~~E 177 (552)
T PRK03739 115 EALEGAK-RAIVHLYN-STSPLQRRVVFGKDRDGIKAIAVDGARLVKEL--AAKYPETEWRFEYSPE 177 (552)
T ss_pred HHhcCCC-CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccCceeEEEEecc
Confidence 2222211 23566665 4455444 566654 3556677788888887 53 2223344545555
No 351
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=22.72 E-value=4.2e+02 Score=27.60 Aligned_cols=53 Identities=11% Similarity=0.207 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 006836 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~ 382 (629)
.|.++..+.++.+.+..+| ...+|+|.-+.+-++..+..+.+++++.+.+.+.
T Consensus 51 ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 51 LTHEEHEELIRAVVEAVNG---RVPVIAGTGSNSTAEAIELTKFAEKAGADGALVV 103 (292)
T ss_pred CCHHHHHHHHHHHHHHhCC---CCcEEeecCCchHHHHHHHHHHHHHcCCCEEEEC
Confidence 4778899999998888665 2357889877788888899999999999977774
No 352
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=22.50 E-value=6.5e+02 Score=25.44 Aligned_cols=136 Identities=13% Similarity=0.170 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEE--eecCCCCCCCCcCCCHHHHHHHHHHh-CCCCCCceEEEeecCCcchhHHHHHHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILEHLKEIA 296 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L--~g~d~~~yg~d~~~~l~eLL~~L~~~-i~~~~~~~iri~~~~p~~i~~~l~el~ 296 (629)
+-+...+-+|++.+.+.|+..+.+ .|.+| -+.+.- =++.++.+.+. .. -...+++...+|....+ .+.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~F---vpn~tf-g~~~i~~i~~~~~~--~~~dvHLMv~~p~~~i~---~~~ 78 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVVHFDVMDNHY---VPNLTF-GAPICKALRDYGIT--APIDVHLMVKPVDRIIP---DFA 78 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEecccCcc---cCcccc-CHHHHHHHHHhCCC--CCEEEEeccCCHHHHHH---HHH
Confidence 345678889999999989877654 34332 111100 05677787653 12 23456665456643222 222
Q ss_pred HHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC
Q 006836 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (629)
Q Consensus 297 ~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~ 376 (629)
. .+ ...+.+-+|+. .+..+.++.+|+. |+.. .+.+. |+-..+.++.. +..+
T Consensus 79 ---~-~g-ad~i~~H~Ea~--------------~~~~~~l~~ik~~--g~k~--Glaln-P~Tp~~~i~~~---l~~~-- 129 (220)
T PRK08883 79 ---K-AG-ASMITFHVEAS--------------EHVDRTLQLIKEH--GCQA--GVVLN-PATPLHHLEYI---MDKV-- 129 (220)
T ss_pred ---H-hC-CCEEEEcccCc--------------ccHHHHHHHHHHc--CCcE--EEEeC-CCCCHHHHHHH---HHhC--
Confidence 2 22 56777777863 2356778889998 8765 44444 66555555544 3333
Q ss_pred CeEEEEeceeCCCCccccC
Q 006836 377 PQVHISQFYPRPGTPAARM 395 (629)
Q Consensus 377 d~v~i~~ysP~PGTpa~~~ 395 (629)
|.+ -.++-.||+.-..+
T Consensus 130 D~v--lvMtV~PGfgGq~f 146 (220)
T PRK08883 130 DLI--LLMSVNPGFGGQSF 146 (220)
T ss_pred CeE--EEEEecCCCCCcee
Confidence 433 34677888875443
No 353
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=22.50 E-value=6.1e+02 Score=27.01 Aligned_cols=87 Identities=20% Similarity=0.268 Sum_probs=63.9
Q ss_pred HHHhhcCC----CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEe------ceeCC
Q 006836 319 VLSAMNRE----YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ------FYPRP 388 (629)
Q Consensus 319 vLk~M~R~----~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~------ysP~P 388 (629)
+-..++.+ .|.+++...++.+.+. -++.+..|+=-|| |+ .....+|+..+.+.+..-+|+=- ..-+|
T Consensus 49 vA~slG~pD~~~~t~~e~~~~vrrI~~a-~~lPv~vD~dtGf-G~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~ 125 (289)
T COG2513 49 VAASLGLPDLGITTLDEVLADARRITDA-VDLPVLVDIDTGF-GE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLP 125 (289)
T ss_pred HHHhcCCCccccccHHHHHHHHHHHHhh-cCCceEEeccCCC-Cc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCCC
Confidence 33456554 4789999999999887 3788999999999 77 99999999999999998777732 22346
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHH
Q 006836 389 GTPAARMKKVPSAVVKKRSRELTSV 413 (629)
Q Consensus 389 GTpa~~~~~v~~~~~~~R~~~L~~l 413 (629)
|.++ ++.++.-.|.+...+.
T Consensus 126 gk~l-----~~~~e~v~rIkAa~~a 145 (289)
T COG2513 126 GKEL-----VSIDEMVDRIKAAVEA 145 (289)
T ss_pred CCCc-----CCHHHHHHHHHHHHHh
Confidence 7765 3556666665544444
No 354
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=22.45 E-value=7e+02 Score=28.43 Aligned_cols=123 Identities=12% Similarity=0.117 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (629)
.+.+-+++.++.+.+.|+..|.|.| ..+.. .+....+|++++.+.. ...+.+..=+-..+. +....+.+.
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkD-taG~l---~P~~v~~Lv~alk~~~----~~pi~~H~Hnt~GlA--~An~laAie 229 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKD-MAGIL---TPKAAKELVSGIKAMT----NLPLIVHTHATSGIS--QMTYLAAVE 229 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECC-CCCCc---CHHHHHHHHHHHHhcc----CCeEEEEeCCCCccH--HHHHHHHHH
Confidence 3788899999999999999999975 23222 2345778888886632 233444311111111 111222222
Q ss_pred CCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 301 ~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
. + +..++..+-+ |..+...-....++..++.. |... |+ +.+.+.+..++++++
T Consensus 230 A-G-ad~vD~ai~g--------~g~gagN~~tE~lv~~L~~~--g~~t------gi---Dl~~L~~~a~~~~~v 282 (468)
T PRK12581 230 A-G-ADRIDTALSP--------FSEGTSQPATESMYLALKEA--GYDI------TL---DETLLEQAANHLRQA 282 (468)
T ss_pred c-C-CCEEEeeccc--------cCCCcCChhHHHHHHHHHhc--CCCC------Cc---CHHHHHHHHHHHHHH
Confidence 2 2 6777766653 44454444556666666655 4442 33 234444444554444
No 355
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=22.34 E-value=6.3e+02 Score=27.18 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=49.1
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-------CCHHHHHH
Q 006836 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLN 264 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-------~~l~eLL~ 264 (629)
++..|-+..| ....=.++..-|-+| .|++.+++|++.+.+.|++.|.|.|.-...+..+.+ .-+.+-++
T Consensus 33 LI~PiFV~eg---~~~~~~I~SMPgv~r-~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr 108 (330)
T COG0113 33 LIYPIFVVEG---ENIKEEIPSMPGVYR-YSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVR 108 (330)
T ss_pred eeEeEEEecC---CCCccccCCCCCcee-ccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHHHH
Confidence 3445556666 333345566666665 589999999999999999999998753222211111 23566778
Q ss_pred HHHHhCC
Q 006836 265 AIVAELP 271 (629)
Q Consensus 265 ~L~~~i~ 271 (629)
.|++.++
T Consensus 109 ~ik~~~p 115 (330)
T COG0113 109 AIKEAFP 115 (330)
T ss_pred HHHHhCC
Confidence 8877664
No 356
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=22.33 E-value=7.7e+02 Score=24.42 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEe-ecCCcchhHHHHHHHHHHhCCC
Q 006836 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPC 303 (629)
Q Consensus 225 ~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~ 303 (629)
+.++-++.+.+.|+.++.+.+-+...-+. ....++++++.+... .++.++ -++. .+ .+.+++..+
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~---~~~~~~i~~i~~~~~----~pv~~~GgI~~---~e---~~~~~~~~G- 95 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGE---PVNLELIEEIVKAVG----IPVQVGGGIRS---LE---DIERLLDLG- 95 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCC---CCCHHHHHHHHHhcC----CCEEEeCCcCC---HH---HHHHHHHcC-
Confidence 44455555667899999999765432122 223678888876542 223332 1211 12 233333332
Q ss_pred cccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCCCCHHHHHHHHHHHHhcCCC
Q 006836 304 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC------GFPGETDEDFNQTVNLIKEYKFP 377 (629)
Q Consensus 304 ~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~Iv------GfPGETeedf~eTl~fl~~l~~d 377 (629)
+..+-+|-....+ .+.+.++.+.+.+. .+.+..|+-. |....+..+..+.++.+.+.+.+
T Consensus 96 -ad~vvigs~~l~d-----------p~~~~~i~~~~g~~--~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~ 161 (234)
T cd04732 96 -VSRVIIGTAAVKN-----------PELVKELLKEYGGE--RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVK 161 (234)
T ss_pred -CCEEEECchHHhC-----------hHHHHHHHHHcCCc--eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCC
Confidence 4555555444322 23333333332221 2445555432 22223455666778888888999
Q ss_pred eEEEEec
Q 006836 378 QVHISQF 384 (629)
Q Consensus 378 ~v~i~~y 384 (629)
.+.+...
T Consensus 162 ~iii~~~ 168 (234)
T cd04732 162 AIIYTDI 168 (234)
T ss_pred EEEEEee
Confidence 8877643
No 357
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=22.17 E-value=6.2e+02 Score=26.44 Aligned_cols=138 Identities=17% Similarity=0.096 Sum_probs=66.5
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCCceEEEeecCCc--chhHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP--FILEHLK 293 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~--~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~--~i~~~l~ 293 (629)
.-..++++|++++....+.|..-+.+..-|. .-|... ...+.+.++.|.+..+ ..-+.+++-... ...+.+.
T Consensus 20 ~lP~tpeEia~~A~~c~~AGAa~vH~H~R~~-~~G~~s~d~~~~~e~~~~IR~~~p---d~iv~~Ttg~~~~~~~~~R~~ 95 (272)
T PF05853_consen 20 ALPITPEEIAADAVACYEAGAAIVHIHARDD-EDGRPSLDPELYAEVVEAIRAACP---DLIVQPTTGGGGGPDPEERLA 95 (272)
T ss_dssp TS--SHHHHHHHHHHHHHHTESEEEE-EE-T-TTS-EE--HHHHHHHHHHHHHHST---TSEEEEESSTTTTSGHHHHCT
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeecCCC-CCCCcCCCHHHHHHHHHHHHHHCC---CeEEEeCCCCCCCCCHHHHHH
Confidence 3456799999999999999998888875411 113221 1356788888887643 234444422211 1222222
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 006836 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (629)
Q Consensus 294 el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~ 373 (629)
-+..+ .+. +-.+.+|-=..+ -..+-=..+.+.+.+.++.++++ |+.+. +.+= +..++.....++++
T Consensus 96 ~v~~~--~pd-~asl~~gs~n~~---~~~~~~~n~~~~~~~~~~~~~e~--Gi~pe--~ev~----d~~~l~~~~~l~~~ 161 (272)
T PF05853_consen 96 HVEAW--KPD-MASLNPGSMNFG---TRDRVYINTPADARELARRMRER--GIKPE--IEVF----DPGHLRNARRLIEK 161 (272)
T ss_dssp HHHHH----S-EEEEE-S-EEES---GGCSEE---HHHHHHHHHHHHHT--T-EEE--EEES----SHHHHHHHHHHHHT
T ss_pred HHHhc--CCC-eEEecccccccc---cCCceecCCHHHHHHHHHHHHHc--CCeEE--EEEE----cHHHHHHHHHHHHC
Confidence 22222 222 112222211111 00000114667778888888888 77663 3332 44556666665555
No 358
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=22.10 E-value=1.8e+02 Score=32.37 Aligned_cols=148 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCcEEEE------eecCCCCCCCCcC-CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHH
Q 006836 222 TVESLVGRVRTVIADGVKEVWL------SSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L------~g~d~~~yg~d~~-~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~e 294 (629)
+.++|.+.-+.+.+.|.+--++ -+.-++.-++|.. .+..+.|+.+.+. |+..+...+.-.-.-+..-
T Consensus 41 ~~~~i~~~k~~ie~~GL~~~vvEs~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~----GI~vicYNFMPv~dW~RT~-- 114 (394)
T TIGR00695 41 EKEEIRKRKEYIESAGLHWSVVESVPVHEAIKTGTGNYGRWIENYKQTLRNLAQC----GIKTVCYNFMPVLDWTRTD-- 114 (394)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCccHHHHcCCCcHHHHHHHHHHHHHHHHHc----CCCEEEEEecccccccccc--
Q ss_pred HHHHHhCCCccccccc-ccCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHhCCC--CEEEEEEEEcCCC-C---CHHHHH
Q 006836 295 IAEVLRHPCVYSFLHV-PVQSGSDAVLSAMN--REYTLSDFRTVVDTLIELVPG--MQIATDIICGFPG-E---TDEDFN 365 (629)
Q Consensus 295 l~~l~~~~~~~~~l~I-GlESgsd~vLk~M~--R~~t~e~~~e~I~~lr~~~pg--i~i~td~IvGfPG-E---Teedf~ 365 (629)
+..-+..+.....+.. -++..+..+|++-+ ..|+.+...++.+.+....+. ..+..++|+|+|| + |.++|+
T Consensus 115 l~~~~~~Ga~al~fd~~~~~~~d~~~l~r~~~~~~~~~e~~~~a~~~f~~~~~~~~~~L~~~ii~~lpGw~~~~~~~~~~ 194 (394)
T TIGR00695 115 LFYPLPDGSKALRFDKIKFAAFELHILKRPDAEKTYNQEELIRAVEEASDMSEQDIAQLTRNIIAGLPGAEEGYTLDRFK 194 (394)
T ss_pred CcccCCCCceeEeeehhhhhccChHhhhcccccccCCHHHHHHHHHHHHhCCHHHHHHhhhhhhhcCCCCCccccHHHHH
Q ss_pred HHHHHHHhcC
Q 006836 366 QTVNLIKEYK 375 (629)
Q Consensus 366 eTl~fl~~l~ 375 (629)
+.+....++.
T Consensus 195 ~~~~~y~~i~ 204 (394)
T TIGR00695 195 ELLAAYKDID 204 (394)
T ss_pred HHHHHhcCCC
No 359
>COG1679 Predicted aconitase [General function prediction only]
Probab=21.70 E-value=1.6e+02 Score=32.40 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=47.7
Q ss_pred eEEEEecCcccC-hhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccC
Q 006836 60 TIYMKTFGCSHN-QSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (629)
Q Consensus 60 ~v~i~TlGC~~N-~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~ 136 (629)
.+-++++||+|- ..+-..++..|+..+- +...++|+-.++.|...+. ..-+++.+++.|.++|-.=|+.-
T Consensus 289 epdli~iGcPHaS~~E~~~la~~l~~r~~-----~~~~~~~V~~sr~v~~~a~--~~G~~~~le~~g~~vv~DtC~vV 359 (403)
T COG1679 289 EPDLIALGCPHASLEELRRLAELLKGRKR-----PAGVPLYVTTSRAVYAQAR--KEGYLAKLEELGVKVVSDTCMVV 359 (403)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHHHhccCC-----CCCCCEEEEcCHHHHHHHh--hhhhHHHHHHcCCEEecCceeEE
Confidence 566889999987 4566778888877652 3456788887777765443 22336667777888877777654
No 360
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.60 E-value=6.9e+02 Score=23.56 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC-Cce--EEEeecCCcc-hhHHHHHHHH
Q 006836 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STM--LRIGMTNPPF-ILEHLKEIAE 297 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~-~~~--iri~~~~p~~-i~~~l~el~~ 297 (629)
+.+.+.+-++.+.+.|+.-|.+.+ ++++.+.+... + ... +.++...... ..+..+....
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~--~~~~~v~~~v~~~~~~~~~~~~~~~a~~ 73 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALA--GSDVPVIVVVGFPTGLTTTEVKVAEVEE 73 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhC--CCCCeEEEEecCCCCCCcHHHHHHHHHH
Confidence 678888889999999999888765 45555554443 2 222 2333222111 2222222222
Q ss_pred HHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC-CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV-PGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~-pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~ 376 (629)
..+. + +..+.+..-. .-.. ..+.+...+.++.+.+.. +++.+..+.+.+.. -+.+.+.+..+.+.+.++
T Consensus 74 a~~~-G-ad~i~v~~~~-----~~~~--~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-~~~~~~~~~~~~~~~~g~ 143 (201)
T cd00945 74 AIDL-G-ADEIDVVINI-----GSLK--EGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-KTADEIAKAARIAAEAGA 143 (201)
T ss_pred HHHc-C-CCEEEEeccH-----HHHh--CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-CCHHHHHHHHHHHHHhCC
Confidence 2222 2 3333321100 0000 002456666666666654 47777777775543 356777777777778888
Q ss_pred CeEEEE
Q 006836 377 PQVHIS 382 (629)
Q Consensus 377 d~v~i~ 382 (629)
+.+..+
T Consensus 144 ~~iK~~ 149 (201)
T cd00945 144 DFIKTS 149 (201)
T ss_pred CEEEeC
Confidence 877654
No 361
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=21.51 E-value=7.6e+02 Score=26.25 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEeceeC
Q 006836 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPR 387 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~-~d~v~i~~ysP~ 387 (629)
...+.|.+.++.+++..++..+-..+ . |.+.+++.+.++.+++.+ .|.+-++..+|.
T Consensus 74 ~g~~~~~~~i~~~~~~~~~~pvI~Si-~---G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn 131 (310)
T PRK02506 74 LGFDYYLDYVLELQKKGPNKPHFLSV-V---GLSPEETHTILKKIQASDFNGLVELNLSCPN 131 (310)
T ss_pred cCHHHHHHHHHHHHhhcCCCCEEEEE-E---eCcHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 46777888887777664555444443 3 468899999999998887 799999998885
No 362
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=21.49 E-value=1.1e+03 Score=25.79 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=45.2
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
..++|...-|||+.-. -+++.+++-++.+.+.|+.+|.|.| .++ +. .+..+.++++.+.+.++
T Consensus 178 v~~~is~~fg~p~~~r-------------~~~~~l~~~~~~~~~~Gad~I~l~D-T~G-~a--~P~~v~~lv~~l~~~~~ 240 (347)
T PLN02746 178 VRGYVSCVVGCPIEGP-------------VPPSKVAYVAKELYDMGCYEISLGD-TIG-VG--TPGTVVPMLEAVMAVVP 240 (347)
T ss_pred EEEEEEeeecCCccCC-------------CCHHHHHHHHHHHHHcCCCEEEecC-CcC-Cc--CHHHHHHHHHHHHHhCC
Confidence 3456777778865321 4799999999999999999999975 222 22 23567888988887654
No 363
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=21.36 E-value=2.8e+02 Score=24.45 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc
Q 006836 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (629)
Q Consensus 329 ~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTp 391 (629)
.+.+.+..+.+++..|+..+.+-|+-. ++-++.+.++.+.+.+.+.+.+.+|.-.+|--
T Consensus 16 ~~~~~~l~~~l~~~~~~~~v~~afle~----~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h 74 (117)
T cd03414 16 NADVAKIARLLEEGTGFARVETAFAAA----TRPSLPEALERLRALGARRVVVLPYLLFTGVL 74 (117)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecC----CCCCHHHHHHHHHHcCCCEEEEEechhcCCch
Confidence 456777888887776666666666532 33468888888888899999999999999853
No 364
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=21.23 E-value=8.9e+02 Score=25.47 Aligned_cols=109 Identities=9% Similarity=0.011 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeec-------CCcchhHHHHH
Q 006836 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLKE 294 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~-------~p~~i~~~l~e 294 (629)
..+++++.++..-+.|+..+|+....+..|+. ..+-.-++..+.... .+|++++. +|..+.+...-
T Consensus 20 ~~~~~~~~a~~Ae~lGfd~~w~~Ehh~~~~~~--~~~p~~~la~lA~~T-----~rI~lgt~v~~~~~~~P~~~Ae~~at 92 (315)
T cd01096 20 VLDRMVDTGVLVDKLNFDTALVLEHHFSENGI--VGAPLTAAAFLLGLT-----ERLNVGSLNQVITTHHPVRIAEEALL 92 (315)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecccccCCCCC--CCCHHHHHHHHHHhc-----CEeEeeeeeeccCccCHHHHHHHHHH
Confidence 34566666666666799999987655555542 123355666666543 36666532 34333443322
Q ss_pred HHHHHhCCCcccccccccCCCCHH-HHHhhcCCC--CHHHHHHHHHHHHHh
Q 006836 295 IAEVLRHPCVYSFLHVPVQSGSDA-VLSAMNREY--TLSDFRTVVDTLIEL 342 (629)
Q Consensus 295 l~~l~~~~~~~~~l~IGlESgsd~-vLk~M~R~~--t~e~~~e~I~~lr~~ 342 (629)
| +.+..+ ++.+|+=+|... ....++... ..+.+.+.++.+++.
T Consensus 93 L-D~lS~G----R~~lGvg~G~~~~e~~~~G~~~~~~~~~~~E~l~~l~~l 138 (315)
T cd01096 93 L-DQMSKG----RFILGFSDCLYDKDMRFFGRPMESQRQLFEACYEIINDA 138 (315)
T ss_pred H-HHHcCC----CeEEEeeCCCCHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 2 223222 567787777543 466666654 234466666666665
No 365
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=21.10 E-value=7.4e+02 Score=26.76 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEeceeCCCC
Q 006836 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (629)
Q Consensus 359 ETeedf~eTl~fl~~l~~d~v~i~~ysP~PGT 390 (629)
.|.+++.+.++.+++.+++.+++....-.||-
T Consensus 132 ~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 132 HTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 57889999999999999987777665555654
No 366
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.03 E-value=6.4e+02 Score=26.58 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhC-CCCEEEEEEEEcC---CCCCHHHHHHHHHHHHhcCCCeEEEEece
Q 006836 332 FRTVVDTLIELV-PGMQIATDIICGF---PGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (629)
Q Consensus 332 ~~e~I~~lr~~~-pgi~i~td~IvGf---PGETeedf~eTl~fl~~l~~d~v~i~~ys 385 (629)
..+.++.+|+.+ +++.+...+=.+. .|.|.++..+.++.+.+.+++.+++....
T Consensus 194 ~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 194 LLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred HHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 567788888876 3556655544321 34688999999999999999999987544
No 367
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=20.99 E-value=8.4e+02 Score=28.60 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh-----CCCC-----------------CCce
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-----LPPD-----------------GSTM 277 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~-----i~~~-----------------~~~~ 277 (629)
.+..+.-++++..|.+.|..-|.++-++.- -++-++.|.+. .+.+ ....
T Consensus 41 T~D~~atv~Qi~~L~~aGceiVRvtvp~~~---------~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a~~~vdk 111 (606)
T PRK00694 41 TTDVDGTVRQICALQEWGCDIVRVTVQGLK---------EAQACEHIKERLIQQGISIPLVADIHFFPQAAMHVADFVDK 111 (606)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcCCCHH---------HHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHHHHhcCc
Confidence 578999999999999999988888754321 12222222222 0000 1123
Q ss_pred EEEeecCCcchh------------------------HHHHHHHHHHhCCCcccccccccCCCC--HHHHHhhcCCCCH--
Q 006836 278 LRIGMTNPPFIL------------------------EHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTL-- 329 (629)
Q Consensus 278 iri~~~~p~~i~------------------------~~l~el~~l~~~~~~~~~l~IGlESgs--d~vLk~M~R~~t~-- 329 (629)
+|+ ||..+. +.+..+.+..+..+ .-+-||+-||| ++++.+.+ .+.
T Consensus 112 iRI---NPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~--~~IRIGvN~GSL~~~i~~~yG--~tpeg 184 (606)
T PRK00694 112 VRI---NPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLG--KAMRIGVNHGSLSERVMQRYG--DTIEG 184 (606)
T ss_pred eEE---CCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCC--CCEEEecCCcCchHHHHHHhC--CCHHH
Confidence 343 333322 23334444444443 35668888775 45555442 343
Q ss_pred --HHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 006836 330 --SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (629)
Q Consensus 330 --e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~ 373 (629)
+...+.++.+.+. |+ .||++-+-.-+.....+..+++.+
T Consensus 185 mVeSAle~~~i~e~~--~f---~diviS~KsSnv~~mi~AyrlLa~ 225 (606)
T PRK00694 185 MVYSALEYIEVCEKL--DY---RDVVFSMKSSNPKVMVAAYRQLAK 225 (606)
T ss_pred HHHHHHHHHHHHHHC--CC---CcEEEEEEcCCHHHHHHHHHHHHH
Confidence 4556667777776 55 366666666666666566665543
No 368
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=20.97 E-value=6.8e+02 Score=24.70 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEec
Q 006836 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384 (629)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~y 384 (629)
..+...+.++.+++..+ +.+...+=.|...+ ++..+.++.+.+.+++.++++..
T Consensus 107 ~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~--~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 107 DPELVAEIVRAVREAVP-IPVTVKIRLGWDDE--EETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEeeccCCc--hHHHHHHHHHHHhCCCEEEECCC
Confidence 56778889999988765 55555555554221 57888888899999999888654
No 369
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=20.97 E-value=2.8e+02 Score=26.89 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=35.7
Q ss_pred Chhh-HHHHHHHHHhcCceee--C-------CCCCCCEEEEeecccccchHHHHHHHHHHHhh--CCCCEEEECcc
Q 006836 71 NQSD-SEYMAGQLSAFGYALT--D-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLVVAGCV 134 (629)
Q Consensus 71 N~~d-se~m~~~L~~~G~~~~--~-------~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~--~~~~VVVgGc~ 134 (629)
|..+ .+.|+..|.. |+++. + +..++|.|+|-+.+........+...+++... .++++++=+|.
T Consensus 13 ~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 13 QTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred hHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 4444 6677777776 76542 1 23458999997765443334455566654321 35666655544
No 370
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=20.86 E-value=2.9e+02 Score=30.22 Aligned_cols=133 Identities=25% Similarity=0.317 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh-----CCCC-----------------CCce
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-----LPPD-----------------GSTM 277 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~-----i~~~-----------------~~~~ 277 (629)
.++.+..+++|..|.+.|..-+.++-+|. .-++-+..|.+. .+.+ ....
T Consensus 27 t~Dv~atv~QI~~L~~aGceivRvavp~~---------~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~v~k 97 (359)
T PF04551_consen 27 TRDVEATVAQIKRLEEAGCEIVRVAVPDM---------EAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEAVDK 97 (359)
T ss_dssp TT-HHHHHHHHHHHHHCT-SEEEEEE-SH---------HHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC-SE
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcCCCH---------HHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHHhCe
Confidence 57899999999999999998888875431 113333444333 1100 1234
Q ss_pred EEEeecCCcch-----------hHHHHHHHHHHhCCCcccccccccCCCC--HHHHHhhcCCCCH----HHHHHHHHHHH
Q 006836 278 LRIGMTNPPFI-----------LEHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTL----SDFRTVVDTLI 340 (629)
Q Consensus 278 iri~~~~p~~i-----------~~~l~el~~l~~~~~~~~~l~IGlESgs--d~vLk~M~R~~t~----e~~~e~I~~lr 340 (629)
+|+ ||..+ .+.+.++.+..++.++ -+-||+-||| .+++++. +.+. +...+-++.+.
T Consensus 98 iRI---NPGNi~~~~~~~~g~~~~~~~~vv~~ake~~i--pIRIGvN~GSL~~~~~~ky--~~t~~amvesA~~~~~~le 170 (359)
T PF04551_consen 98 IRI---NPGNIVDEFQEELGSIREKVKEVVEAAKERGI--PIRIGVNSGSLEKDILEKY--GPTPEAMVESALEHVRILE 170 (359)
T ss_dssp EEE----TTTSS----SS-SS-HHHHHHHHHHHHHHT---EEEEEEEGGGS-HHHHHHH--CHHHHHHHHHHHHHHHHHH
T ss_pred EEE---CCCcccccccccccchHHHHHHHHHHHHHCCC--CEEEecccccCcHHHHhhc--cchHHHHHHHHHHHHHHHH
Confidence 554 66666 4556666666655443 5667887775 5555555 3233 44556666677
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 006836 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (629)
Q Consensus 341 ~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~ 373 (629)
+. |+ .++++-+-.-+.....+..+++.+
T Consensus 171 ~~--~f---~~iviSlKsSdv~~~i~ayr~la~ 198 (359)
T PF04551_consen 171 EL--GF---DDIVISLKSSDVPETIEAYRLLAE 198 (359)
T ss_dssp HC--T----GGEEEEEEBSSHHHHHHHHHHHHH
T ss_pred HC--CC---CcEEEEEEeCChHHHHHHHHHHHH
Confidence 66 54 355555544454444444444333
No 371
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=20.84 E-value=1.2e+03 Score=26.13 Aligned_cols=104 Identities=13% Similarity=0.021 Sum_probs=56.4
Q ss_pred HHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccc
Q 006836 231 RTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLH 309 (629)
Q Consensus 231 ~~l~~~-GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~ 309 (629)
+.+.+. +++.|.+.. .+..+-..+- -.++++.|.+ . +..|+-+.+-+|..+++...+..+.+..++ +.
T Consensus 179 ~~L~~IphV~~IRI~T-R~pvv~P~RI--T~ell~~Lk~-~---~~~~v~~h~nhp~Eit~~a~~Al~~L~~aG----I~ 247 (417)
T TIGR03820 179 TELRAIPHVEVIRIGT-RVPVVLPQRI--TDELVAILKK-H---HPVWLNTHFNHPREITASSKKALAKLADAG----IP 247 (417)
T ss_pred HHHhhcCCCceEEEee-cccccccccc--CHHHHHHHHh-c---CCeEEEEeCCChHhChHHHHHHHHHHHHcC----CE
Confidence 444333 566666643 3333311110 1467776654 2 346777777788877765544444444443 34
Q ss_pred cccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Q 006836 310 VPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352 (629)
Q Consensus 310 IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~ 352 (629)
++.||. +|+-+ +-+.+-+.++.+.+.+. |+...--+
T Consensus 248 l~nQsV---LLkGV--ND~~~~l~~L~~~L~~~--gV~PYYl~ 283 (417)
T TIGR03820 248 LGNQSV---LLAGV--NDCPRIMKKLVHKLVAN--RVRPYYLY 283 (417)
T ss_pred EEeece---EECCc--CCCHHHHHHHHHHHHHC--CCeeceee
Confidence 566664 12322 23667788888888888 76654333
No 372
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.75 E-value=1e+03 Score=25.52 Aligned_cols=142 Identities=13% Similarity=0.203 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEe-ecCCCCCC--CCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006836 222 TVESLVGRVRTVIADGVKEVWLS-SEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L~-g~d~~~yg--~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (629)
+++++.++++.+.+.|++.+.+= |.+....+ .+. ..-.+.++++.+.+. ....+++.. |-..-.+...++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~-~~D~~~i~avr~~~g--~~~~l~vDa-N~~~~~~~A~~~~~~ 198 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKV-DAAVERVAALREAVG--PDIDIGVDF-HGRVSKPMAKDLAKE 198 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHH-HHHHHHHHHHHHhhC--CCCEEEEEC-CCCCCHHHHHHHHHh
Confidence 57888999999999999988873 21111110 000 112567788877664 455677763 322222222223333
Q ss_pred HhCCCcccccccccCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHHHhCCCC-EEEEEEE-EcCCCCCHHHHH
Q 006836 299 LRHPCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLIELVPGM-QIATDII-CGFPGETDEDFN 365 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgsd~vLk~M~R~-----------~t~e~~~e~I~~lr~~~pgi-~i~td~I-vGfPGETeedf~ 365 (629)
+...+ ..++.=|+...+-+.+..+++. ++..++.+.++ .. .+ .+..++. +| ......
T Consensus 199 l~~~~-i~~iEeP~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~---~~--~~d~v~~d~~~~G----Git~~~ 268 (352)
T cd03325 199 LEPYR-LLFIEEPVLPENVEALAEIAARTTIPIATGERLFSRWDFKELLE---DG--AVDIIQPDISHAG----GITELK 268 (352)
T ss_pred ccccC-CcEEECCCCccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHH---hC--CCCEEecCccccC----CHHHHH
Confidence 33333 5677878877777777766553 23344444432 21 11 1222221 12 245677
Q ss_pred HHHHHHHhcCCC
Q 006836 366 QTVNLIKEYKFP 377 (629)
Q Consensus 366 eTl~fl~~l~~d 377 (629)
+.++++++.++.
T Consensus 269 ~~~~lA~~~gi~ 280 (352)
T cd03325 269 KIAAMAEAYDVA 280 (352)
T ss_pred HHHHHHHHcCCc
Confidence 788888888875
No 373
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=20.73 E-value=2e+02 Score=30.99 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=37.1
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-------CCCHHHHHHHHHHhCC
Q 006836 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELP 271 (629)
Q Consensus 213 ~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~-------~~~l~eLL~~L~~~i~ 271 (629)
..-|-+| .+++.++++++.+.+.|++.|.|.|.--.....+. ..-+.+.++.|++.++
T Consensus 47 smPg~~r-~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~p 111 (324)
T PF00490_consen 47 SMPGVYR-YSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFP 111 (324)
T ss_dssp TSTTEEE-EEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHST
T ss_pred CCCCeee-eCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCC
Confidence 3344443 58999999999999999999999885111111111 1235678888888775
No 374
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=20.64 E-value=7.6e+02 Score=23.70 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=26.6
Q ss_pred ccccccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCCEEE-EEEEEcCC
Q 006836 307 FLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIA-TDIICGFP 357 (629)
Q Consensus 307 ~l~IGlESgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~pgi~i~-td~IvGfP 357 (629)
.+++-+.++. .|+| |.+.+++.++++.+.+. |++.+. ..+-+|..
T Consensus 108 ~v~lrv~~g~-----~~~R~G~~~~e~~~~~~~i~~~-~~l~l~Gl~~H~~~~ 154 (211)
T cd06808 108 RVLLRIDTGD-----ENGKFGVRPEELKALLERAKEL-PHLRLVGLHTHFGSA 154 (211)
T ss_pred eEEEEEcCCC-----CCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEEEecCCC
Confidence 4555565554 5666 56778888888887664 445443 23444443
No 375
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=20.40 E-value=9.6e+02 Score=25.43 Aligned_cols=128 Identities=14% Similarity=0.212 Sum_probs=76.7
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~ 296 (629)
.+-.+.+.+++|++.....|.+.++|. -++|..... ..+..+.+.|.+.+.. ....+.+.
T Consensus 81 ~~ekS~~~l~~e~~r~~~lG~~~lv~H---pG~~~~~~~e~~l~~i~~~Ln~~~~~-~~v~i~~e--------------- 141 (280)
T COG0648 81 KVEKSIERLIDEIDRCEQLGAKLLVFH---PGSYLGQGKEEGLNRIAEALNELLEE-EGVIILLE--------------- 141 (280)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEC---CccccCCCHHHHHHHHHHHHHHHhhc-cCCeEEEE---------------
Confidence 456789999999999999999999986 456655321 1233333333322210 00111111
Q ss_pred HHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE----EEcCCCCCHHHHHHHHHHHH
Q 006836 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI----ICGFPGETDEDFNQTVNLIK 372 (629)
Q Consensus 297 ~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~----IvGfPGETeedf~eTl~fl~ 372 (629)
.++. +-++++.+++++.++++.+.+. ..+.+..|+ =.|+.--|+++|+++++.+.
T Consensus 142 ------------~~ag--------egs~~g~~F~~L~eii~~~~~~-~~igvCiDtcH~~Aagy~~~~~~~~~~vl~~~d 200 (280)
T COG0648 142 ------------NTAG--------EGSGKGTQFGELAEIIDLIEEK-ERIGVCIDTCHAFAAGYDIITEEDFEKVLNEFD 200 (280)
T ss_pred ------------Eecc--------ccCccccchhhHHHHHHhhccc-CceEEEEEchhhhhccCCcCcHHHHHHHHHHHH
Confidence 1111 2245777888888999888887 226666664 44555566789999998776
Q ss_pred h-cCCCeEEEEece
Q 006836 373 E-YKFPQVHISQFY 385 (629)
Q Consensus 373 ~-l~~d~v~i~~ys 385 (629)
+ ++++++....++
T Consensus 201 ~~~G~~~~~~~Hln 214 (280)
T COG0648 201 KVLGLEYLKHIHLN 214 (280)
T ss_pred HHhChhhheeEeec
Confidence 6 466544444443
No 376
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=20.36 E-value=4.3e+02 Score=29.46 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=45.2
Q ss_pred CCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 314 SGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPG-MQIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 314 Sgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~pg-i~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
..+++-++.+++ ......+.+++++++++ + -.|..||+..+|.+ +.-++..+.+.+.
T Consensus 66 ~IDe~dl~~~g~wp~pr~~~A~Ll~kL~a~--qp~aIgLDi~r~~P~~--~~~~~La~~~~~~ 124 (400)
T COG4252 66 AIDEQDLESLGQWPWPRAALARLLDKLAAA--QPRAIGLDIYRDLPSS--PGDRALAAVLQRA 124 (400)
T ss_pred EecHHHHHhcCCCCCCHHHHHHHHHHHHhc--CCcEEEEEEeecCCCC--cccHHHHHHhccC
Confidence 568888999998 78999999999999999 6 46888999999986 3344455555544
No 377
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.34 E-value=6.9e+02 Score=25.57 Aligned_cols=72 Identities=18% Similarity=0.407 Sum_probs=40.2
Q ss_pred ccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEE-------EcCCCC-----CHHHHHHHHHHHH
Q 006836 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII-------CGFPGE-----TDEDFNQTVNLIK 372 (629)
Q Consensus 305 ~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~I-------vGfPGE-----Teedf~eTl~fl~ 372 (629)
+..+.+++...+.. +..+ .++.++..+.-+.+.++ |+.+..--+ ++.|.+ ..+.+.+.++++.
T Consensus 30 ~~~VEl~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~--gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~ 104 (279)
T TIGR00542 30 FDFVEMSVDETDDR-LSRL--DWSREQRLALVNAIIET--GVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLAR 104 (279)
T ss_pred CCEEEEecCCccch-hhcc--CCCHHHHHHHHHHHHHc--CCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 56666665443211 1111 23566777777778888 877653211 122221 2235677888888
Q ss_pred hcCCCeEEE
Q 006836 373 EYKFPQVHI 381 (629)
Q Consensus 373 ~l~~d~v~i 381 (629)
+++...+.+
T Consensus 105 ~lG~~~v~~ 113 (279)
T TIGR00542 105 DLGIRTIQL 113 (279)
T ss_pred HhCCCEEEe
Confidence 888877755
No 378
>TIGR03842 F420_CPS_4043 F420-dependent oxidoreductase, CPS_4043 family. This model represents a family of putative F420-dependent oxidoreductases, fairly closely related to 5,10-methylenetetrahydromethanopterin reductase (mer, TIGR03555), both within the bacterial luciferase-like monoxygenase (LLM) family. A fairly deep split (to about 40 % sequence identity) in the present family separates a strictly Actinobacterial clade from an alpha/beta/gamma-proteobacterial clade, in which the member is often the only apparent F420-dependent LLM family member. The specific function, and whether Actinobacterial and Proteobacterial clades differ in function, are unknown.
Probab=20.32 E-value=9.9e+02 Score=25.37 Aligned_cols=106 Identities=17% Similarity=0.243 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee--cCC-----cchhHHHH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM--TNP-----PFILEHLK 293 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~--~~p-----~~i~~~l~ 293 (629)
.|++++++.++..-+.|+..+|+.+.. +.+ . +..-++..+.... .++++++ ++| ..+.+...
T Consensus 10 ~~~~~~~~~a~~AE~~Gfd~~w~~e~~-~~~-~----~p~~~laa~A~~T-----~rI~lgt~v~~~~~r~P~~lA~~~a 78 (330)
T TIGR03842 10 PPASRVVELARQAERHGFDYVWTFDSH-ILW-Q----EPFVIYSQILAAT-----RNMVVGPMVTNPLTRDWTVTASLFA 78 (330)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEecCcC-ccc-c----CHHHHHHHHHHhC-----CeeEEEeeecCCCCCCHHHHHHHHH
Confidence 478999999998888899999986532 222 1 2344666666543 3667753 222 22333221
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhC
Q 006836 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELV 343 (629)
Q Consensus 294 el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~ 343 (629)
.| +.+..+ ++.+|+=+|... ...++.. ...+.+.+.++.+++.+
T Consensus 79 tL-D~lS~G----R~~lG~G~G~~~-~~~~g~~~~~~~~~~E~l~ilr~l~ 123 (330)
T TIGR03842 79 TL-NEMFGN----RTVCGIGRGDSA-VRVLGGKPATLARLREAMHVIKELA 123 (330)
T ss_pred HH-HHHcCC----ceEEeecCCcHH-HHHhCCCCchHHHHHHHHHHHHHHh
Confidence 11 222222 567888787643 3444432 23556677777777653
No 379
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=20.29 E-value=3.9e+02 Score=28.79 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=39.6
Q ss_pred cCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--------CCCHHHHHHHHHHhCC
Q 006836 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELP 271 (629)
Q Consensus 211 ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~--------~~~l~eLL~~L~~~i~ 271 (629)
++..-|-+| .+++.+++|++.+.+.|++.|.|.|.... .-+|. ..-+.+-++.+++.++
T Consensus 42 I~smPg~~r-~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~-~~KD~~gs~A~~~~g~v~~air~iK~~~p 108 (320)
T cd04823 42 IPSMPGVFR-LSIDELLKEAEEAVDLGIPAVALFPVTPP-ELKSEDGSEAYNPDNLVCRAIRAIKEAFP 108 (320)
T ss_pred cCCCCCcee-eCHHHHHHHHHHHHHcCCCEEEEecCCCc-ccCCcccccccCCCChHHHHHHHHHHhCC
Confidence 344445444 68999999999999999999999986111 11111 1235667777777664
No 380
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=20.29 E-value=3.8e+02 Score=28.91 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=39.1
Q ss_pred CccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-C-------CCHHHHHHHHHHhCC
Q 006836 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-G-------VNLPILLNAIVAELP 271 (629)
Q Consensus 212 p~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~-~-------~~l~eLL~~L~~~i~ 271 (629)
+..-|-+| .+++.++++++.+.+.|++.|.|.+. ... +|. + .-+.+-++.|++.++
T Consensus 48 ~smPg~~r-~s~d~l~~~v~~~~~~Gi~av~LFgv--~~~-Kd~~gs~A~~~~g~v~rair~iK~~~p 111 (323)
T PRK09283 48 PSMPGVYR-LSIDLLVKEAEEAVELGIPAVALFGV--PEL-KDEDGSEAYNPDGLVQRAIRAIKKAFP 111 (323)
T ss_pred CCCCCcee-eCHHHHHHHHHHHHHCCCCEEEEeCc--CCC-CCcccccccCCCCHHHHHHHHHHHhCC
Confidence 34445444 68999999999999999999999986 222 221 1 225667777777654
No 381
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=20.05 E-value=4.1e+02 Score=28.65 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=39.9
Q ss_pred cCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-C-------CCHHHHHHHHHHhCC
Q 006836 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-G-------VNLPILLNAIVAELP 271 (629)
Q Consensus 211 ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~-~-------~~l~eLL~~L~~~i~ 271 (629)
++..-|-+| .+++.++++++.+.+.|++.|.|.|.. .. +|. + .-+.+-++.|++.++
T Consensus 49 I~smPg~~r-~sid~l~~~~~~~~~~Gi~~v~lFgv~--~~-Kd~~gs~A~~~~g~v~~air~iK~~~p 113 (322)
T PRK13384 49 ISTLPGISR-LPESALADEIERLYALGIRYVMPFGIS--HH-KDAKGSDTWDDNGLLARMVRTIKAAVP 113 (322)
T ss_pred cCCCCCcce-ECHHHHHHHHHHHHHcCCCEEEEeCCC--CC-CCCCcccccCCCChHHHHHHHHHHHCC
Confidence 344445444 689999999999999999999999852 22 221 1 235677788877665
Done!