Query 006836
Match_columns 629
No_of_seqs 501 out of 2517
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 10:15:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgq_A Protein TM_1862; alpha- 100.0 9.8E-50 3.3E-54 417.8 32.3 284 191-482 3-296 (304)
2 1olt_A Oxygen-independent copr 99.9 2.7E-23 9.2E-28 229.1 18.0 193 191-394 52-252 (457)
3 3t7v_A Methylornithine synthas 99.9 5.9E-22 2E-26 210.6 19.5 193 193-400 62-255 (350)
4 3iix_A Biotin synthetase, puta 99.9 4.4E-21 1.5E-25 203.0 22.3 195 192-403 53-249 (348)
5 1r30_A Biotin synthase; SAM ra 99.8 2E-19 6.9E-24 192.6 24.1 196 192-405 65-268 (369)
6 1tv8_A MOAA, molybdenum cofact 99.7 4E-15 1.4E-19 157.1 25.2 196 192-405 14-218 (340)
7 3c8f_A Pyruvate formate-lyase 99.6 1.5E-13 5.1E-18 136.7 19.3 176 196-391 23-208 (245)
8 2yx0_A Radical SAM enzyme; pre 99.5 2.9E-13 1E-17 143.1 20.3 178 196-391 74-281 (342)
9 2z2u_A UPF0026 protein MJ0257; 99.3 8.3E-12 2.8E-16 129.9 13.7 175 193-392 52-260 (311)
10 2a5h_A L-lysine 2,3-aminomutas 99.2 4.2E-10 1.4E-14 122.4 20.9 182 190-394 113-302 (416)
11 3rfa_A Ribosomal RNA large sub 99.1 1.8E-09 6.2E-14 116.6 19.4 183 191-392 114-319 (404)
12 4fhd_A Spore photoproduct lyas 97.6 0.00028 9.7E-09 75.0 11.5 164 195-373 110-282 (368)
13 3can_A Pyruvate-formate lyase- 97.1 0.0083 2.9E-07 56.7 14.0 131 240-391 6-141 (182)
14 2yxb_A Coenzyme B12-dependent 96.8 0.0089 3E-07 56.2 11.7 106 58-165 18-142 (161)
15 1ccw_A Protein (glutamate muta 94.5 0.12 4.2E-06 46.9 8.7 94 59-154 4-121 (137)
16 1req_A Methylmalonyl-COA mutas 93.5 0.28 9.7E-06 56.3 10.8 95 58-154 596-708 (727)
17 2xij_A Methylmalonyl-COA mutas 93.1 0.51 1.7E-05 54.5 12.1 94 58-153 604-715 (762)
18 1ydn_A Hydroxymethylglutaryl-C 92.6 1.4 4.8E-05 44.8 13.7 147 219-382 21-175 (295)
19 2cw6_A Hydroxymethylglutaryl-C 92.4 2.5 8.6E-05 43.1 15.4 145 219-382 22-176 (298)
20 1y80_A Predicted cobalamin bin 91.9 0.55 1.9E-05 45.4 9.1 88 58-149 88-194 (210)
21 2i2x_B MTAC, methyltransferase 91.0 1.5 5.2E-05 43.9 11.6 104 58-167 123-243 (258)
22 1xrs_B D-lysine 5,6-aminomutas 90.0 1.5 5E-05 44.4 10.4 94 58-154 120-243 (262)
23 2ftp_A Hydroxymethylglutaryl-C 88.2 9.6 0.00033 38.9 15.3 145 219-382 25-179 (302)
24 1ydo_A HMG-COA lyase; TIM-barr 86.8 6.3 0.00022 40.5 12.9 145 219-382 23-177 (307)
25 3kp1_A D-ornithine aminomutase 86.6 1.4 4.7E-05 49.7 8.0 73 79-154 627-720 (763)
26 1yez_A MM1357; MAR30, autostru 82.7 4.4 0.00015 31.9 7.4 56 423-482 12-67 (68)
27 1req_B Methylmalonyl-COA mutas 81.9 1.9 6.6E-05 48.8 6.8 101 58-164 509-628 (637)
28 3ewb_X 2-isopropylmalate synth 81.5 12 0.00041 38.1 12.1 145 219-381 22-169 (293)
29 3ezx_A MMCP 1, monomethylamine 81.3 1.8 6.1E-05 42.2 5.6 77 58-136 92-188 (215)
30 1yvc_A MRR5; structure, autost 80.7 6.1 0.00021 31.4 7.6 56 423-482 14-69 (70)
31 1nvm_A HOA, 4-hydroxy-2-oxoval 80.5 12 0.00042 38.8 12.1 138 219-381 25-168 (345)
32 3bul_A Methionine synthase; tr 77.2 6.5 0.00022 44.0 9.1 78 58-137 98-191 (579)
33 1uwv_A 23S rRNA (uracil-5-)-me 77.1 10 0.00036 40.5 10.5 61 426-490 15-75 (433)
34 3ble_A Citramalate synthase fr 74.6 24 0.00083 36.5 12.2 143 219-381 36-188 (337)
35 3rmj_A 2-isopropylmalate synth 69.9 23 0.00077 37.3 10.8 146 218-381 28-176 (370)
36 2jjq_A Uncharacterized RNA met 68.1 5.9 0.0002 42.5 5.9 60 424-491 17-76 (425)
37 3eeg_A 2-isopropylmalate synth 67.1 18 0.00062 37.3 9.2 144 219-380 23-169 (325)
38 1aj0_A DHPS, dihydropteroate s 65.2 37 0.0013 34.4 10.8 139 219-374 33-207 (282)
39 2yci_X 5-methyltetrahydrofolat 64.9 31 0.0011 34.6 10.2 141 219-375 29-193 (271)
40 1eiw_A Hypothetical protein MT 64.6 65 0.0022 27.9 10.8 91 74-166 16-108 (111)
41 3ivs_A Homocitrate synthase, m 63.7 52 0.0018 35.2 12.2 142 218-381 55-199 (423)
42 1t2y_A Metallothionein, MT; pr 61.8 4.8 0.00016 25.9 2.1 14 516-530 2-15 (26)
43 1tx2_A DHPS, dihydropteroate s 53.6 53 0.0018 33.5 9.6 140 220-374 59-226 (297)
44 2h1q_A Hypothetical protein; Z 52.5 12 0.00041 37.8 4.5 55 94-152 185-239 (270)
45 3l5o_A Uncharacterized protein 51.9 7.8 0.00027 39.2 3.0 54 94-151 185-238 (270)
46 2nx9_A Oxaloacetate decarboxyl 51.1 1.7E+02 0.0058 31.6 13.7 135 220-381 26-177 (464)
47 2ztj_A Homocitrate synthase; ( 50.5 2E+02 0.0068 30.1 13.9 139 219-381 20-163 (382)
48 1rqb_A Transcarboxylase 5S sub 50.4 2E+02 0.0069 31.7 14.3 140 220-381 43-194 (539)
49 1eye_A DHPS 1, dihydropteroate 48.2 1E+02 0.0036 31.0 10.7 138 219-374 24-199 (280)
50 2dqw_A Dihydropteroate synthas 45.5 63 0.0021 32.9 8.6 139 219-375 47-220 (294)
51 3inp_A D-ribulose-phosphate 3- 45.2 1.8E+02 0.0061 28.6 11.7 133 218-392 34-171 (246)
52 1x7f_A Outer surface protein; 43.8 77 0.0026 33.5 9.2 89 295-392 46-181 (385)
53 3rr1_A GALD, putative D-galact 43.8 1.4E+02 0.0047 31.5 11.4 100 221-325 124-226 (405)
54 3npg_A Uncharacterized DUF364 42.7 17 0.00057 36.2 3.7 65 95-163 164-231 (249)
55 3fst_A 5,10-methylenetetrahydr 42.5 1.1E+02 0.0037 31.2 9.9 124 220-367 93-223 (304)
56 1f6y_A 5-methyltetrahydrofolat 42.5 1.1E+02 0.0037 30.4 9.8 61 219-286 20-80 (262)
57 3vnd_A TSA, tryptophan synthas 40.7 1E+02 0.0036 30.7 9.3 22 321-342 71-92 (267)
58 3f6c_A Positive transcription 40.5 1.1E+02 0.0039 25.2 8.5 96 71-170 10-122 (134)
59 2y5s_A DHPS, dihydropteroate s 40.4 1.5E+02 0.0051 30.1 10.5 141 220-375 42-217 (294)
60 3i9v_6 NADH-quinone oxidoreduc 40.2 7.1 0.00024 37.1 0.5 72 60-136 35-114 (181)
61 2vp8_A Dihydropteroate synthas 40.1 86 0.0029 32.3 8.7 139 220-374 61-239 (318)
62 3tr9_A Dihydropteroate synthas 39.6 3.3E+02 0.011 27.9 13.1 138 219-373 44-223 (314)
63 2qxy_A Response regulator; reg 39.1 1.3E+02 0.0045 25.1 8.7 102 58-169 4-122 (142)
64 2p0o_A Hypothetical protein DU 37.5 1.7E+02 0.0057 30.8 10.5 25 368-392 128-155 (372)
65 3lmz_A Putative sugar isomeras 37.1 1.6E+02 0.0053 28.2 9.9 66 305-382 44-109 (257)
66 2rdm_A Response regulator rece 36.7 1.7E+02 0.0059 23.8 10.6 95 71-169 14-124 (132)
67 3lte_A Response regulator; str 36.1 1.1E+02 0.0039 25.1 7.8 103 59-169 7-126 (132)
68 3eod_A Protein HNR; response r 36.1 1.2E+02 0.0041 24.9 7.9 103 59-169 8-127 (130)
69 3lua_A Response regulator rece 35.7 1.9E+02 0.0065 24.0 9.4 105 58-169 4-128 (140)
70 2nly_A BH1492 protein, diverge 34.5 1.4E+02 0.0047 29.5 8.9 135 276-415 28-182 (245)
71 3hv2_A Response regulator/HD d 34.3 1.8E+02 0.0063 24.7 9.1 106 53-167 9-132 (153)
72 3sbf_A Mandelate racemase / mu 34.2 2.1E+02 0.0071 30.0 10.9 98 221-325 132-249 (401)
73 3kto_A Response regulator rece 33.4 1.3E+02 0.0046 25.0 7.8 105 58-168 6-126 (136)
74 3hdv_A Response regulator; PSI 33.2 1.7E+02 0.0057 24.2 8.4 105 57-169 6-128 (136)
75 1lgh_A LH II, B800/850, light 31.5 28 0.00097 26.6 2.5 30 593-622 7-36 (56)
76 2q5c_A NTRC family transcripti 31.3 1.5E+02 0.0053 27.8 8.4 87 59-166 95-181 (196)
77 3nav_A Tryptophan synthase alp 30.4 2.8E+02 0.0095 27.6 10.5 26 321-346 73-98 (271)
78 3snk_A Response regulator CHEY 29.8 1.1E+02 0.0039 25.4 6.7 104 57-168 13-133 (135)
79 3rht_A (gatase1)-like protein; 29.5 76 0.0026 31.6 6.1 76 58-136 4-91 (259)
80 4e38_A Keto-hydroxyglutarate-a 29.2 3E+02 0.01 26.8 10.2 117 218-384 40-156 (232)
81 3ovp_A Ribulose-phosphate 3-ep 28.7 2E+02 0.0069 27.7 9.0 132 219-392 12-149 (228)
82 3i42_A Response regulator rece 28.5 2.4E+02 0.0081 22.9 8.6 93 71-167 12-121 (127)
83 2r91_A 2-keto-3-deoxy-(6-phosp 27.7 3.1E+02 0.011 27.2 10.4 49 328-382 49-97 (286)
84 1m3s_A Hypothetical protein YC 27.6 1.3E+02 0.0045 27.2 7.1 70 59-133 38-115 (186)
85 2ze3_A DFA0005; organic waste 27.1 3E+02 0.01 27.5 10.1 82 327-415 59-140 (275)
86 4dad_A Putative pilus assembly 27.1 2E+02 0.007 24.0 7.9 103 58-168 20-141 (146)
87 3apt_A Methylenetetrahydrofola 26.9 88 0.003 31.9 6.2 50 220-269 82-137 (310)
88 1srr_A SPO0F, sporulation resp 26.5 2.2E+02 0.0076 23.0 7.9 94 71-168 12-121 (124)
89 3jte_A Response regulator rece 26.5 2.7E+02 0.0093 23.1 8.6 94 71-168 12-123 (143)
90 2xvy_A Chelatase, putative; me 26.4 1.4E+02 0.0049 29.1 7.6 58 328-390 24-93 (269)
91 1qkk_A DCTD, C4-dicarboxylate 26.4 3E+02 0.01 23.3 9.1 93 71-167 12-120 (155)
92 3hzh_A Chemotaxis response reg 26.0 2.8E+02 0.0097 23.6 8.9 100 58-165 36-154 (157)
93 3gt7_A Sensor protein; structu 25.9 2.7E+02 0.0092 23.7 8.6 102 59-168 8-127 (154)
94 4dwd_A Mandelate racemase/muco 25.3 2.9E+02 0.0099 28.8 10.1 98 221-323 138-237 (393)
95 2ox4_A Putative mandelate race 25.2 2.5E+02 0.0087 29.1 9.7 102 220-325 144-257 (403)
96 3r0u_A Enzyme of enolase super 25.2 3.3E+02 0.011 28.2 10.5 94 221-325 141-236 (379)
97 1vzw_A Phosphoribosyl isomeras 25.1 2.6E+02 0.0091 26.5 9.1 132 225-386 33-170 (244)
98 2qq6_A Mandelate racemase/muco 25.1 5.3E+02 0.018 26.7 12.2 101 221-325 148-258 (410)
99 2qgh_A Diaminopimelate decarbo 25.0 2.7E+02 0.0092 29.1 9.9 45 323-368 174-220 (425)
100 2gl5_A Putative dehydratase pr 24.8 2.4E+02 0.0083 29.3 9.4 101 220-324 148-265 (410)
101 1dbw_A Transcriptional regulat 24.8 2.8E+02 0.0095 22.4 9.2 92 72-167 13-120 (126)
102 3h5i_A Response regulator/sens 24.7 3E+02 0.01 22.8 11.3 94 71-166 14-122 (140)
103 3ozy_A Putative mandelate race 24.6 3E+02 0.01 28.5 10.1 94 220-324 149-242 (389)
104 3q45_A Mandelate racemase/muco 24.5 1.9E+02 0.0066 29.8 8.4 93 221-324 139-231 (368)
105 3a10_A Response regulator; pho 24.5 2.6E+02 0.009 22.1 9.9 89 71-164 10-113 (116)
106 1f07_A Coenzyme F420-dependent 24.3 4.9E+02 0.017 25.7 11.4 106 221-343 11-125 (321)
107 3jva_A Dipeptide epimerase; en 24.3 5.7E+02 0.02 25.9 14.3 93 221-324 138-230 (354)
108 2rdx_A Mandelate racemase/muco 24.3 3.5E+02 0.012 27.7 10.5 133 222-377 145-290 (379)
109 3crn_A Response regulator rece 23.8 2.6E+02 0.0087 23.0 7.8 93 71-167 12-120 (132)
110 3stp_A Galactonate dehydratase 23.7 2E+02 0.0068 30.4 8.5 98 222-323 179-276 (412)
111 3rcy_A Mandelate racemase/muco 23.7 3.9E+02 0.013 28.3 10.9 100 221-324 145-250 (433)
112 2pju_A Propionate catabolism o 23.6 1.8E+02 0.006 28.2 7.4 86 59-166 107-192 (225)
113 1z69_A COG2141, coenzyme F420- 23.5 4.9E+02 0.017 25.7 11.2 106 221-343 11-125 (327)
114 1w3i_A EDA, 2-keto-3-deoxy glu 23.5 3.3E+02 0.011 27.2 9.7 49 328-382 50-98 (293)
115 1jeo_A MJ1247, hypothetical pr 23.4 2.3E+02 0.0078 25.4 7.9 71 59-134 41-119 (180)
116 1tzz_A Hypothetical protein L1 23.2 6.2E+02 0.021 26.0 12.5 95 221-325 164-258 (392)
117 2j48_A Two-component sensor ki 23.2 1.1E+02 0.0037 24.2 5.1 88 71-164 10-114 (119)
118 3tj4_A Mandelate racemase; eno 22.7 5.1E+02 0.017 26.5 11.4 94 220-323 149-243 (372)
119 2qr3_A Two-component system re 22.5 2.5E+02 0.0087 23.0 7.6 96 71-169 12-127 (140)
120 2plj_A Lysine/ornithine decarb 22.3 3.8E+02 0.013 28.0 10.4 58 307-366 167-227 (419)
121 1zlp_A PSR132, petal death pro 22.2 1.4E+02 0.0048 30.6 6.7 80 327-413 83-168 (318)
122 2o56_A Putative mandelate race 22.1 2.9E+02 0.0099 28.7 9.3 100 221-324 151-262 (407)
123 1wbh_A KHG/KDPG aldolase; lyas 22.0 4.2E+02 0.014 25.1 9.7 44 219-271 23-66 (214)
124 3cg0_A Response regulator rece 21.9 2.6E+02 0.009 22.9 7.5 105 58-168 9-128 (140)
125 2nuw_A 2-keto-3-deoxygluconate 21.7 3.3E+02 0.011 27.0 9.3 49 328-382 50-98 (288)
126 1tmy_A CHEY protein, TMY; chem 21.4 3.1E+02 0.011 21.8 8.3 91 71-165 11-118 (120)
127 1mxs_A KDPG aldolase; 2-keto-3 21.4 3.9E+02 0.013 25.6 9.4 44 219-271 33-76 (225)
128 4e7p_A Response regulator; DNA 21.4 3.7E+02 0.012 22.6 9.3 107 56-170 18-142 (150)
129 3i4k_A Muconate lactonizing en 21.3 3.3E+02 0.011 28.2 9.5 93 221-323 147-240 (383)
130 3s5o_A 4-hydroxy-2-oxoglutarat 21.2 3.4E+02 0.011 27.3 9.3 52 328-382 65-116 (307)
131 3vni_A Xylose isomerase domain 21.2 2.5E+02 0.0087 27.0 8.2 51 327-381 44-107 (294)
132 2qw5_A Xylose isomerase-like T 21.1 5.5E+02 0.019 25.3 11.0 51 329-381 163-213 (335)
133 2rjn_A Response regulator rece 21.1 3.6E+02 0.012 22.7 8.4 101 59-167 8-125 (154)
134 3mqt_A Mandelate racemase/muco 21.1 2.5E+02 0.0084 29.3 8.5 90 225-323 155-247 (394)
135 3qrx_B Melittin; calcium-bindi 20.9 35 0.0012 21.5 1.1 12 557-568 14-25 (26)
136 3sho_A Transcriptional regulat 20.8 2.7E+02 0.0093 25.0 7.9 68 63-133 42-123 (187)
137 3cg4_A Response regulator rece 20.8 3.5E+02 0.012 22.2 8.9 101 58-166 7-125 (142)
138 2lpm_A Two-component response 20.7 72 0.0025 27.7 3.6 82 76-163 22-117 (123)
139 3bg3_A Pyruvate carboxylase, m 20.7 9.6E+02 0.033 27.2 16.2 137 221-381 122-280 (718)
140 3kht_A Response regulator; PSI 20.6 3.6E+02 0.012 22.3 8.7 92 71-166 14-126 (144)
141 3mcm_A 2-amino-4-hydroxy-6-hyd 20.6 3.4E+02 0.012 29.1 9.4 65 221-286 209-280 (442)
142 1ydn_A Hydroxymethylglutaryl-C 20.4 6.2E+02 0.021 24.9 17.6 61 193-270 137-197 (295)
143 4e4u_A Mandalate racemase/muco 20.4 2.8E+02 0.0097 29.1 8.8 101 221-325 143-249 (412)
144 7odc_A Protein (ornithine deca 20.1 6.1E+02 0.021 26.5 11.5 60 321-382 165-235 (424)
145 1rvk_A Isomerase/lactonizing e 20.1 5.1E+02 0.017 26.4 10.7 99 221-324 148-247 (382)
146 1h7n_A 5-aminolaevulinic acid 20.1 1.9E+02 0.0067 29.8 7.0 59 211-271 57-124 (342)
147 2y88_A Phosphoribosyl isomeras 20.1 2.2E+02 0.0076 27.0 7.4 131 225-385 32-172 (244)
No 1
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=100.00 E-value=9.8e-50 Score=417.81 Aligned_cols=284 Identities=29% Similarity=0.486 Sum_probs=234.9
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVA 268 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~--~~~l~eLL~~L~~ 268 (629)
+..++|++++||+++|+||.+|..+|+.|++++++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+|++.+.+
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~ 82 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNS 82 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999998653 3579999999976
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006836 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (629)
Q Consensus 269 ~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (629)
.+ +..|+++.+++|..+++.+ +..+.+.+++|+++++|+||+|+++|+.|+|+++.+++.++++.+++++||+.+
T Consensus 83 -~~--gi~~ir~~~~~p~~l~~e~--l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i 157 (304)
T 2qgq_A 83 -LN--GEFWIRVMYLHPDHLTEEI--ISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVL 157 (304)
T ss_dssp -SS--SSCEEEECCCCGGGCCHHH--HHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEE
T ss_pred -cC--CCcEEEEeeeecccCCHHH--HHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEE
Confidence 44 5679999889999887755 444555566689999999999999999999999999999999999998889999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hcccccCCC
Q 006836 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEG 425 (629)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~R~~~L~~l~~~--~~~~~~~vG 425 (629)
.+|||+||||||++||++|++++++++++.+++|+|+|+||||+++++ ++|++++++|.++|+++++. .+.+++++|
T Consensus 158 ~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g 237 (304)
T 2qgq_A 158 RTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVG 237 (304)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998 89999999999999999985 467899999
Q ss_pred cEEEEEEEEEecCCceEEEEecCCeEE-----EECCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 006836 426 RVERIWITEIAADGIHLVGHTKGYVQV-----LVPSTGNMLGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 426 ~~~~Vlve~~~~~~~~~~Grt~~y~~V-----~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v 482 (629)
++++||||+. + +..+.||+.+|.+| +|+.+. .+|++++|+|+++..++|.|+++
T Consensus 238 ~~~~vl~e~~-~-~~~~~g~~~~~~~~~dg~~~~~~~~-~~g~~~~v~i~~~~~~~l~g~~~ 296 (304)
T 2qgq_A 238 KKLKFLVEGK-E-GKFLVGRTWTEAPEVDGVVFVRGKG-KIGDFLEVVIKEHDEYDMWGSVI 296 (304)
T ss_dssp CEEEEEEEEE-E-TTEEEEEETTCCTTTSCCEEEESCC-CTTCEEEEEEEEEETTEEEEEEC
T ss_pred CEEEEEEEec-C-CCEEEEECCCCcEeccceEEEcCCC-CCCCEEEEEEEEeeCCeEEEEEE
Confidence 9999999986 3 33688999999988 887554 78999999999999999999975
No 2
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.90 E-value=2.7e-23 Score=229.07 Aligned_cols=193 Identities=18% Similarity=0.247 Sum_probs=155.7
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCC---CcCCCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCcCCCHHHHH
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG---~~Rsr~~e~Iv~Ei~~l~~~----GvkeI~L~g~d~~~yg~d~~~~l~eLL 263 (629)
+...||.|. +|+++|+||..+...+ ..+.++++.|++|++.+.+. ++..|.|.|.+.+.... ..+.+|+
T Consensus 52 ~~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l~~---~~l~~ll 127 (457)
T 1olt_A 52 PLSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK---AQISRLM 127 (457)
T ss_dssp CEEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH---HHHHHHH
T ss_pred ceEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccCCH---HHHHHHH
Confidence 567789998 6999999999876432 23456789999999987764 46678887753322221 3578888
Q ss_pred HHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 006836 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (629)
Q Consensus 264 ~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~ 343 (629)
+.+.+.++......+++. ++|..+++.. +. .++..+ ++++++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 128 ~~i~~~~~~~~~~eitie-~~p~~l~~e~--l~-~L~~~G-~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~- 201 (457)
T 1olt_A 128 KLLRENFQFNADAEISIE-VDPREIELDV--LD-HLRAEG-FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI- 201 (457)
T ss_dssp HHHHHHSCEEEEEEEEEE-ECSSSCCTHH--HH-HHHHTT-CCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT-
T ss_pred HHHHHhCCCCCCcEEEEE-EccCcCCHHH--HH-HHHHcC-CCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHc-
Confidence 888775431123567774 7999887644 33 333344 79999999999999999999999999999999999999
Q ss_pred CCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccc
Q 006836 344 PGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (629)
Q Consensus 344 pgi~-i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~ 394 (629)
|+. +.+|+|+|+||||.+++.+|++++.++++++++++.|+|.|||+++.
T Consensus 202 -G~~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~ 252 (457)
T 1olt_A 202 -GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQ 252 (457)
T ss_dssp -TCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGG
T ss_pred -CCCcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHh
Confidence 997 99999999999999999999999999999999999999999999875
No 3
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.88 E-value=5.9e-22 Score=210.63 Aligned_cols=193 Identities=15% Similarity=0.190 Sum_probs=155.0
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCC-cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 193 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~-~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
.+.|.+++||+++|.||..+...+. ...+++++|+++++.+.+.|+++|.|+|.+...|..+ ...+.++++.+.+..+
T Consensus 62 ~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~-~~~~~~l~~~ik~~~~ 140 (350)
T 3t7v_A 62 NCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYED-PNRFVELVQIVKEELG 140 (350)
T ss_dssp EEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHS-THHHHHHHHHHHHHHC
T ss_pred EEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccC-HHHHHHHHHHHHhhcC
Confidence 4578999999999999998765432 2237999999999999999999999988654333211 1356788888876432
Q ss_pred CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 006836 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (629)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td 351 (629)
..+. +++..+++.. +..+. ..+ +..+.+|+||+++++++.|+++++.+++.++++.++++ |+.+.++
T Consensus 141 ----i~i~---~s~g~~~~e~--l~~L~-~aG-~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 207 (350)
T 3t7v_A 141 ----LPIM---ISPGLMDNAT--LLKAR-EKG-ANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQ--GYCVEDG 207 (350)
T ss_dssp ----SCEE---EECSSCCHHH--HHHHH-HTT-EEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHH--TCEEEEE
T ss_pred ----ceEE---EeCCCCCHHH--HHHHH-HcC-CCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEccc
Confidence 2233 3444444432 33333 334 78899999999999999999999999999999999999 9999999
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCH
Q 006836 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400 (629)
Q Consensus 352 ~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~ 400 (629)
+|+|+ |||.+++.++++++++++++.+.+++|.|.||||+++.+..+.
T Consensus 208 ~i~Gl-get~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~~~~~~~~ 255 (350)
T 3t7v_A 208 ILTGV-GNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRDKSN 255 (350)
T ss_dssp EEESS-SCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTTTTCCCCCC
T ss_pred eEeec-CCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcCccCCCCCh
Confidence 99999 9999999999999999999999999999999999998775544
No 4
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.87 E-value=4.4e-21 Score=203.03 Aligned_cols=195 Identities=20% Similarity=0.266 Sum_probs=155.6
Q ss_pred eEEEEEeCCCCCCCCCCCccCccCCCc--CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 006836 192 FVEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~rG~~--Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~ 269 (629)
+.+.|.+++||+++|.||..+...+.. ..+++++|+++++.+.+.|+++|.|+|.+...+.. ..+.++++.+.+.
T Consensus 53 ~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~---~~~~~li~~i~~~ 129 (348)
T 3iix_A 53 IRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYXMP---DVISDIVKEIKKM 129 (348)
T ss_dssp EEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTT---HHHHHHHHHHHTT
T ss_pred EEEEeEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccH---HHHHHHHHHHHhc
Confidence 346789999999999999987655432 23699999999999999999999999865333321 3467777777642
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEE
Q 006836 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349 (629)
Q Consensus 270 i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~ 349 (629)
...+. +++..+++.. +..+.. .+ +..+.+++||.++++++.++++.+.+++.++++.++++ |+.+.
T Consensus 130 -----~~~i~---~s~g~l~~e~--l~~L~~-ag-~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~ 195 (348)
T 3iix_A 130 -----GVAVT---LSLGEWPREY--YEKWKE-AG-ADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKEL--GYETG 195 (348)
T ss_dssp -----SCEEE---EECCCCCHHH--HHHHHH-HT-CCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHT--TCEEE
T ss_pred -----CceEE---EecCCCCHHH--HHHHHH-hC-CCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHh--CCeec
Confidence 12333 2333344332 333333 23 67888999999999999999999999999999999999 99999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHHH
Q 006836 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403 (629)
Q Consensus 350 td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~~ 403 (629)
+++|+|+||||.+++.++++++++++++.+.+++|.|.||||+++.+..+.++.
T Consensus 196 ~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~~~~~e~ 249 (348)
T 3iix_A 196 AGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLT 249 (348)
T ss_dssp ECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHH
T ss_pred cceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccCCCCCHHHH
Confidence 999999999999999999999999999999999999999999998876665443
No 5
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.84 E-value=2e-19 Score=192.60 Aligned_cols=196 Identities=16% Similarity=0.204 Sum_probs=153.2
Q ss_pred eEEEEEe-CCCCCCCCCCCccCccC--C--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-CCCHHHHHHH
Q 006836 192 FVEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNA 265 (629)
Q Consensus 192 ~~a~V~i-srGCp~~CsFC~ip~~r--G--~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~-~~~l~eLL~~ 265 (629)
....|.+ ++||+++|.||..+... + +++.+++++|+++++.+.+.|+++|.|.|... ++... ...+.++++.
T Consensus 65 ~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~~~gg~~--~p~~~~~~~l~~ll~~ 142 (369)
T 1r30_A 65 VSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWK--NPHERDMPYLEQMVQG 142 (369)
T ss_dssp EEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCS--SCCTTTHHHHHHHHHH
T ss_pred EEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHHcCCcEEEEEeCCC--CCCcCCHHHHHHHHHH
Confidence 3456786 99999999999987643 2 35668999999999999999999999987421 11111 1346777777
Q ss_pred HHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 006836 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (629)
Q Consensus 266 L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg 345 (629)
+.+. +. .+. +++..+++.. +..+.. .+ +.++++++|| ++++++.|+|+++.+++.++++.++++ |
T Consensus 143 ik~~----g~-~i~---~t~G~l~~e~--l~~L~~-aG-vd~v~i~les-~~e~~~~i~~~~~~~~~l~~i~~a~~~--G 207 (369)
T 1r30_A 143 VKAM----GL-EAC---MTLGTLSESQ--AQRLAN-AG-LDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--G 207 (369)
T ss_dssp HHHT----TS-EEE---EECSSCCHHH--HHHHHH-HC-CCEEECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHH--H
T ss_pred HHHc----CC-eEE---EecCCCCHHH--HHHHHH-CC-CCEEeecCcC-CHHHHHHhCCCCCHHHHHHHHHHHHHc--C
Confidence 7652 22 232 2444444432 333333 23 7899999999 999999999999999999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcC--CCeEEEEeceeCCCCccccCCCCCHHHHHH
Q 006836 346 MQIATDIICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPAARMKKVPSAVVKK 405 (629)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~~l~--~d~v~i~~ysP~PGTpa~~~~~v~~~~~~~ 405 (629)
+.+.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+.++.++..+
T Consensus 208 i~v~~~~I~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~ 268 (369)
T 1r30_A 208 IKVCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIR 268 (369)
T ss_dssp CEEECCEEECS-SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHH
T ss_pred CeeeeeeEeeC-CCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHH
Confidence 99999999999 999999999999999997 889999999999999999877677654433
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.68 E-value=4e-15 Score=157.15 Aligned_cols=196 Identities=13% Similarity=0.226 Sum_probs=153.3
Q ss_pred eEEEEEeCCCCCCCCCCCccCcc-------CCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 006836 192 FVEILPINVGCLGACTYCKTKHA-------RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (629)
Q Consensus 192 ~~a~V~isrGCp~~CsFC~ip~~-------rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~ 264 (629)
....|.++++||++|.||..+.. .+....++.+++.+.++.+.+.|++.|.|+|.+.+.+ .++.++++
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~-----~~l~~li~ 88 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR-----RDLDVLIA 88 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGS-----TTHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCccch-----hhHHHHHH
Confidence 35678999999999999987652 1234568899999999999999999999998654433 35788888
Q ss_pred HHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCC-CHHHHHHHHHHHHHhC
Q 006836 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY-TLSDFRTVVDTLIELV 343 (629)
Q Consensus 265 ~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~-t~e~~~e~I~~lr~~~ 343 (629)
.+.+ .. +...+.+. +|...+.+.++ .+... + +.++.++++|.++++++.++++. +.+++.+.++.++++
T Consensus 89 ~~~~-~~--~~~~i~i~-TNG~ll~~~~~---~L~~~-g-~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~- 158 (340)
T 1tv8_A 89 KLNQ-ID--GIEDIGLT-TNGLLLKKHGQ---KLYDA-G-LRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSI- 158 (340)
T ss_dssp HHTT-CT--TCCEEEEE-ECSTTHHHHHH---HHHHH-T-CCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHT-
T ss_pred HHHh-CC--CCCeEEEE-eCccchHHHHH---HHHHC-C-CCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHC-
Confidence 8765 22 33366664 67766654332 23322 2 57899999999999999999887 999999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCC-CCCHHHHHH
Q 006836 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405 (629)
Q Consensus 344 pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~~~ 405 (629)
|+.+...+++ +||++.+++.++++++.+++++ +.+..|+|.++|+.+... .++.++..+
T Consensus 159 -g~~v~i~~vv-~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~p~~~~~~~~~~~~~~~~e~~~ 218 (340)
T 1tv8_A 159 -GLNVKVNVVI-QKGINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSKVVTKDEMLT 218 (340)
T ss_dssp -TCEEEEEEEE-CTTTTGGGHHHHHHHHHHTTCC-EEEEECCCBCSSSSBCCSSCCCHHHHHH
T ss_pred -CCCEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEEeeEcCCCccchhhcCCCHHHHHH
Confidence 9888888777 7999999999999999999997 778889999999876544 577654433
No 7
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.55 E-value=1.5e-13 Score=136.66 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=129.0
Q ss_pred EEeCCCCCCCCCCCccCccC--CCcCCCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 006836 196 LPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (629)
Q Consensus 196 V~isrGCp~~CsFC~ip~~r--G~~Rsr~~e~Iv~Ei~~l~~~---GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i 270 (629)
+.++.||+++|.||..+... +..+.+++++++++++.+.+. +...|.|+|.+.+.+ .+ .+.++++.+.+.
T Consensus 23 ~i~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~-~~---~l~~l~~~~~~~- 97 (245)
T 3c8f_A 23 ITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQ-AE---FVRDWFRACKKE- 97 (245)
T ss_dssp EEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGG-HH---HHHHHHHHHHTT-
T ss_pred EEEeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCcCCC-HH---HHHHHHHHHHHc-
Confidence 34567999999999987543 345678899999999987764 478999998654432 11 146777776542
Q ss_pred CCCCCceEEEeecCCcc--hhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006836 271 PPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (629)
Q Consensus 271 ~~~~~~~iri~~~~p~~--i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (629)
+. .+.+. ++... ..+.+ .++++. +..+.++++|+++++++.+++. +.+++.+.++.++++ |+.+
T Consensus 98 ---~~-~i~i~-Tng~~~~~~~~~---~~l~~~---~~~v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~--g~~v 163 (245)
T 3c8f_A 98 ---GI-HTCLD-TNGFVRRYDPVI---DELLEV---TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANK--NVKV 163 (245)
T ss_dssp ---TC-CEEEE-ECCCCCCCCHHH---HHHHHT---CSEEEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHH--TCCE
T ss_pred ---CC-cEEEE-eCCCcCcCHHHH---HHHHHh---CCEEEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhc--CCEE
Confidence 22 45554 34432 23333 334432 4579999999999999999654 469999999999999 8777
Q ss_pred EEEEEEcCCC--CCHHHHHHHHHHHHhcCC-CeEEEEeceeCCCCc
Q 006836 349 ATDIICGFPG--ETDEDFNQTVNLIKEYKF-PQVHISQFYPRPGTP 391 (629)
Q Consensus 349 ~td~IvGfPG--ETeedf~eTl~fl~~l~~-d~v~i~~ysP~PGTp 391 (629)
...+++ .|| ++.+++.++++++.++++ ..+++.+|.|.++++
T Consensus 164 ~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3c8f_A 164 WIRYVV-VPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHK 208 (245)
T ss_dssp EEEEEE-CTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHH
T ss_pred EEEEee-cCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhH
Confidence 666655 565 778999999999999995 889999999988764
No 8
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.53 E-value=2.9e-13 Score=143.09 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=129.2
Q ss_pred EEeC-CCCCCCCCCCccCccC-----CCcCCCCHHHHHHHHHHHHHC------C--------------CcEEEEe-ecCC
Q 006836 196 LPIN-VGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIAD------G--------------VKEVWLS-SEDT 248 (629)
Q Consensus 196 V~is-rGCp~~CsFC~ip~~r-----G~~Rsr~~e~Iv~Ei~~l~~~------G--------------vkeI~L~-g~d~ 248 (629)
+..+ +||+++|.||..+... +..+..++++|++++..+.+. | ++.|.|+ |.+-
T Consensus 74 i~~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEP 153 (342)
T 2yx0_A 74 MTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEP 153 (342)
T ss_dssp EESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCG
T ss_pred EEeChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcc
Confidence 3444 7999999999987542 145668899999998776431 2 4678886 5444
Q ss_pred CCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcC---
Q 006836 249 GAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR--- 325 (629)
Q Consensus 249 ~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R--- 325 (629)
..+ ..+.++++.+.+. + ..+.+. ++... .+. +..+...+.....+.+++++.++++++.+++
T Consensus 154 ll~-----~~l~~ll~~~~~~----g-~~i~l~-TNG~~-~e~---l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~ 218 (342)
T 2yx0_A 154 MLY-----PYMGDLVEEFHKR----G-FTTFIV-TNGTI-PER---LEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMI 218 (342)
T ss_dssp GGS-----TTHHHHHHHHHHT----T-CEEEEE-ECSCC-HHH---HHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSS
T ss_pred cch-----hhHHHHHHHHHHC----C-CcEEEE-cCCCc-HHH---HHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCc
Confidence 333 3578898888762 3 255554 45543 322 3334433223678999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc
Q 006836 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (629)
Q Consensus 326 ~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTp 391 (629)
+++.+++.+.++.++++ |+.+...+++ +||++.+++.++++++++++++.+++.+|.|.|+++
T Consensus 219 ~~~~~~~~~~i~~l~~~--g~~v~i~~~l-~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~ 281 (342)
T 2yx0_A 219 PDGWERILRFLELMRDL--PTRTVVRLTL-VKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSR 281 (342)
T ss_dssp SCHHHHHHHHHHHHTTC--SSEEEEEEEE-CTTTTCCCHHHHHHHHHHHCCSEEEEEECC------
T ss_pred ccHHHHHHHHHHHHHhC--CCCEEEEEEE-ECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCc
Confidence 57899999999999998 8888888888 699999899999999999999999999999877665
No 9
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=8.3e-12 Score=129.95 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=109.9
Q ss_pred EEEEEeC-CCCCCCCCCCccCccC--C-------CcCCCCHHHHHHHHHHHHH------CC---------------CcEE
Q 006836 193 VEILPIN-VGCLGACTYCKTKHAR--G-------HLGSYTVESLVGRVRTVIA------DG---------------VKEV 241 (629)
Q Consensus 193 ~a~V~is-rGCp~~CsFC~ip~~r--G-------~~Rsr~~e~Iv~Ei~~l~~------~G---------------vkeI 241 (629)
...+.++ .||+++|.||..+... | ..+..++++|++++..+.+ .| .+.|
T Consensus 52 ~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i 131 (311)
T 2z2u_A 52 CIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHV 131 (311)
T ss_dssp EEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEE
T ss_pred eEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEE
Confidence 4567888 7999999999876422 1 2467889999988766532 12 4567
Q ss_pred EEe-ecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHH
Q 006836 242 WLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320 (629)
Q Consensus 242 ~L~-g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vL 320 (629)
.|+ |.+-+.+ ..+.++++.+.+. +. .+.+. ++... .+. +..+ + ...+.+++++.+++++
T Consensus 132 ~~s~gGEPll~-----~~l~~li~~~~~~----g~-~~~l~-TNG~~-~~~---l~~L----~-~~~v~isld~~~~~~~ 191 (311)
T 2z2u_A 132 AISLSGEPTLY-----PYLDELIKIFHKN----GF-TTFVV-SNGIL-TDV---IEKI----E-PTQLYISLDAYDLDSY 191 (311)
T ss_dssp EECSSSCGGGS-----TTHHHHHHHHHHT----TC-EEEEE-ECSCC-HHH---HHHC----C-CSEEEEECCCSSTTTC
T ss_pred EEeCCcCccch-----hhHHHHHHHHHHC----CC-cEEEE-CCCCC-HHH---HHhC----C-CCEEEEEeecCCHHHH
Confidence 887 4333332 3578898888763 32 55554 44432 222 2222 2 4689999999999999
Q ss_pred HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 321 SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 321 k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
+.++++ ++.+++.+.++.+++. | .+...++ ..||.+. ++.+.++++.+++++.+++++|+|.++++.
T Consensus 192 ~~i~~~~~~~~~~v~~~i~~l~~~--g-~v~i~~~-~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~ 260 (311)
T 2z2u_A 192 RRICGGKKEYWESILNTLDILKEK--K-RTCIRTT-LIRGYND-DILKFVELYERADVHFIELKSYMHVGYSQK 260 (311)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTS--S-SEEEEEE-ECTTTTC-CGGGTHHHHHHHTCSEEEEEECC-------
T ss_pred HHHhCCccchHHHHHHHHHHHHhc--C-CEEEEEE-EECCcch-hHHHHHHHHHHcCCCEEEEEeeEEcccccc
Confidence 999887 6789999999999887 6 4444443 3477777 899999999999999999999999999873
No 10
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.22 E-value=4.2e-10 Score=122.41 Aligned_cols=182 Identities=18% Similarity=0.221 Sum_probs=131.7
Q ss_pred CceEEEEEeCCCCCCCCCCCccCccCC-CcCCCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 006836 190 NKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (629)
Q Consensus 190 ~~~~a~V~isrGCp~~CsFC~ip~~rG-~~Rsr~~e~Iv~Ei~~l~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~ 267 (629)
.+....+.++.||+.+|.||......+ ..+..+.+++.+.++.+.+ .|+++|.|+|.+-+.+.. ..|.++++.+.
T Consensus 113 yp~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d---~~L~~il~~l~ 189 (416)
T 2a5h_A 113 YPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSD---ETLEYIIAKLR 189 (416)
T ss_dssp SSSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCH---HHHHHHHHHHH
T ss_pred CCCEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCH---HHHHHHHHHHH
Confidence 345678899999999999998765444 3456889999999998887 699999999976554421 13778888886
Q ss_pred HhCCCCCCceEEEeec----CCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 006836 268 AELPPDGSTMLRIGMT----NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (629)
Q Consensus 268 ~~i~~~~~~~iri~~~----~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~ 343 (629)
+ ++ +...+++++- .|..+++.+ .+.++.. ..+++++++.+++ .+ + +++.++++.++++
T Consensus 190 ~-~~--~v~~i~i~Tng~~~~p~~it~e~---l~~L~~~---~~v~Isl~~~~~~---ei----~-~~v~~ai~~L~~a- 251 (416)
T 2a5h_A 190 E-IP--HVEIVRIGSRTPVVLPQRITPEL---VNMLKKY---HPVWLNTHFNHPN---EI----T-EESTRACQLLADA- 251 (416)
T ss_dssp T-ST--TCCEEEEECSHHHHCGGGCCHHH---HHHHGGG---CSEEEEECCCSGG---GC----C-HHHHHHHHHHHHT-
T ss_pred h-cC--CccEEEEEecccccccccCCHHH---HHHHHhc---CcEEEEEecCCHH---HH----h-HHHHHHHHHHHHc-
Confidence 5 43 4557788631 334444433 3334332 4678999988772 22 3 8999999999999
Q ss_pred CCCEEEEEEEE--cCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccc
Q 006836 344 PGMQIATDIIC--GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (629)
Q Consensus 344 pgi~i~td~Iv--GfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~ 394 (629)
|+.+....++ |+ +++++++.+.++++.++++....++.+.+.+||+.+.
T Consensus 252 -Gi~v~i~~vll~Gv-Nd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~ 302 (416)
T 2a5h_A 252 -GVPLGNQSVLLRGV-NDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFR 302 (416)
T ss_dssp -TCCEEEEEECCTTT-TCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGC
T ss_pred -CCEEEEEEEEECCC-CCCHHHHHHHHHHHHHcCCceEEEeecCCCCCccccc
Confidence 8766555444 66 4888999999999999998776677666678988654
No 11
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=99.12 E-value=1.8e-09 Score=116.61 Aligned_cols=183 Identities=16% Similarity=0.319 Sum_probs=125.9
Q ss_pred ceEEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHH----------CCCcEEEEeecCCCCCCCCcC--CC
Q 006836 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----------DGVKEVWLSSEDTGAYGRDIG--VN 258 (629)
Q Consensus 191 ~~~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~----------~GvkeI~L~g~d~~~yg~d~~--~~ 258 (629)
.....|.++.||+++|.||..+.. |..|..++++|++++..... .++..|+|+|. |..+. ..
T Consensus 114 r~tlcVSsq~GCnl~C~fC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~Gg-----GEPLln~d~ 187 (404)
T 3rfa_A 114 RATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGM-----GEPLLNLNN 187 (404)
T ss_dssp CEEEECCCEEECSSCCTTCGGGTT-CEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSS-----SCGGGCHHH
T ss_pred CceEEEEeCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCC-----CCcccCHHH
Confidence 456788889999999999998653 55678899999999987654 24788999852 33321 23
Q ss_pred HHHHHHHHHHhCCCCCC----ceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc---CCCCHHH
Q 006836 259 LPILLNAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSD 331 (629)
Q Consensus 259 l~eLL~~L~~~i~~~~~----~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~---R~~t~e~ 331 (629)
+.++++.+.+.. +. ..+.++ ++-. .+.++++. ... -..+.+.+.+.+++..+.+. ++++.++
T Consensus 188 v~~~i~~lk~~~---Gl~~s~r~itls-TnG~--~p~i~~L~---~~~--d~~LaiSLka~d~e~~~~i~pv~~~~~le~ 256 (404)
T 3rfa_A 188 VVPAMEIMLDDF---GFGLSKRRVTLS-TSGV--VPALDKLG---DMI--DVALAISLHAPNDEIRDEIVPINKKYNIET 256 (404)
T ss_dssp HHHHHHHHHSTT---TTCCCGGGEEEE-ESCC--HHHHHHHH---HHC--CCEEEEECCCSSHHHHHHHSGGGGTSCHHH
T ss_pred HHHHHHHHHhhc---CcCcCCCceEEE-CCCc--HHHHHHHH---Hhh--cceEEecccCCCHHHHHHhcCCccCCCHHH
Confidence 556666665421 22 256665 3321 23333333 322 23677899999999987654 6899999
Q ss_pred HHHHHHHH-HHhCC---CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 006836 332 FRTVVDTL-IELVP---GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 332 ~~e~I~~l-r~~~p---gi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa 392 (629)
+.+.++.+ .+.-. .+.+.+-+|=|+ .++++++.+.++|++.++. .+++.+|.|+|+++.
T Consensus 257 vl~ai~~~~~~~g~~~~~V~ie~vLI~Gv-NDs~e~~~~La~ll~~l~~-~VnLIpynP~~~~~~ 319 (404)
T 3rfa_A 257 FLAAVRRYLEKSNANQGRVTIEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAPY 319 (404)
T ss_dssp HHHHHHHHHHHCTTTTTCEEEEEEEBTTT-TCSHHHHHHHHHHTTTSCE-EEEEEECCCCTTCCC
T ss_pred HHHHHHHHHHHhCCCcccEEEEEEEecCC-CCCHHHHHHHHHHHHcCCC-cEEEEeccCCCCCCC
Confidence 99999554 44411 344554444454 7899999999999999874 789999999988753
No 12
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=97.59 E-value=0.00028 Score=75.04 Aligned_cols=164 Identities=13% Similarity=0.203 Sum_probs=103.7
Q ss_pred EEEeCCCCCCCCCCCccCccCCC----cCCCCHHHHHHHHHHHHH-CCCc-EEEEeecCCCCCCCCcCCC-HHHHHHHHH
Q 006836 195 ILPINVGCLGACTYCKTKHARGH----LGSYTVESLVGRVRTVIA-DGVK-EVWLSSEDTGAYGRDIGVN-LPILLNAIV 267 (629)
Q Consensus 195 ~V~isrGCp~~CsFC~ip~~rG~----~Rsr~~e~Iv~Ei~~l~~-~Gvk-eI~L~g~d~~~yg~d~~~~-l~eLL~~L~ 267 (629)
.+...+||+++|.||......|. ......++++++++...+ .+.+ ..+-+|.++..|..+.... ..++|+.+.
T Consensus 110 ~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 110 AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIG 189 (368)
T ss_dssp ECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHHH
T ss_pred eeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHHH
Confidence 46778999999999987654442 124568999999876443 3333 4556666666653222222 346666665
Q ss_pred HhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCCC
Q 006836 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGM 346 (629)
Q Consensus 268 ~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~pgi 346 (629)
+ . +...+.+.+-.+ .++ . |..+...+. ..+.+.+-+ +++-+.+-.+ -+.++-+++++.+.++ |+
T Consensus 190 ~-~---~~~~v~i~TKs~-lid-~---L~~l~~~~~--v~V~~Sitt--~~l~r~~EP~aps~~~RL~Ai~~l~~a--Gi 254 (368)
T 4fhd_A 190 A-T---DYGRLRFVTKYE-HVD-H---LLDARHNGK--TRFRFSINS--RYVINHFEPGTSSFDGRLAAARKVAGA--GY 254 (368)
T ss_dssp H-C---SSEEEEEEESCC-CCG-G---GTTCCCTTC--EEEEEEECC--HHHHHHHCTTSCCHHHHHHHHHHHHHT--TC
T ss_pred h-C---CCceEEEEeCCc-CHH-H---HHhcCcCCc--eEEEEEEcC--HHHHHHcCCCCCCHHHHHHHHHHHHHC--CC
Confidence 4 2 233566653333 232 1 222222222 234444533 6777888665 5899999999999999 99
Q ss_pred EEEEEEEEcCCCCCH-HHHHHHHHHHHh
Q 006836 347 QIATDIICGFPGETD-EDFNQTVNLIKE 373 (629)
Q Consensus 347 ~i~td~IvGfPGETe-edf~eTl~fl~~ 373 (629)
.+...|.==+|+++. +++.+.++.+.+
T Consensus 255 pv~v~iaPIiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 255 KLGFVVAPIYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp EEEEEEEEECCCTTHHHHHHHHHHHHHH
T ss_pred eEEEEEeCcCCCCCCHHHHHHHHHHHHH
Confidence 988777666788765 688888886655
No 13
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=97.07 E-value=0.0083 Score=56.65 Aligned_cols=131 Identities=10% Similarity=0.101 Sum_probs=85.1
Q ss_pred EEEEeecCCCCCCCCcCCCH-HHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHH
Q 006836 240 EVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 318 (629)
Q Consensus 240 eI~L~g~d~~~yg~d~~~~l-~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~ 318 (629)
.|.|+|.+-+.+ .++ .++++.+.+. + ..+.+. ++.. +.+.. +..++.. ...+.+.+.+.+++
T Consensus 6 ~v~~tGGEPll~-----~~~~~~l~~~~~~~----g-~~~~l~-TNG~-l~~~~--~~~l~~~---~d~v~isld~~~~~ 68 (182)
T 3can_A 6 GVTFCGGEPLLH-----PEFLIDILKRCGQQ----G-IHRAVD-TTLL-ARKET--VDEVMRN---CELLLIDLKSMDST 68 (182)
T ss_dssp CEEECSSTGGGS-----HHHHHHHHHHHHHT----T-CCEEEE-CTTC-CCHHH--HHHHHHT---CSEEEEECCCSCHH
T ss_pred EEEEEcccccCC-----HHHHHHHHHHHHHC----C-CcEEEE-CCCC-CCHHH--HHHHHhh---CCEEEEECCCCCHH
Confidence 467776443332 234 4777776552 2 244553 4544 33221 3333332 45788999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC--CCHHHHHHHHHHHHhc-CC-CeEEEEeceeCCCCc
Q 006836 319 VLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG--ETDEDFNQTVNLIKEY-KF-PQVHISQFYPRPGTP 391 (629)
Q Consensus 319 vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG--ETeedf~eTl~fl~~l-~~-d~v~i~~ysP~PGTp 391 (629)
..+.+.. .+.+.+.+.++.+++. |+.+...+.+ .|| ++.+++.+.++++.++ ++ ..+++.+|.|.....
T Consensus 69 ~~~~~~g-~~~~~i~~~i~~l~~~--g~~v~i~~~v-~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~ 141 (182)
T 3can_A 69 VHQTFCD-VPNELILKNIRRVAEA--DFPYYIRIPL-IEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGK 141 (182)
T ss_dssp HHHHHHS-SCSHHHHHHHHHHHHT--TCCEEEEEEE-CBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC-----
T ss_pred HHHHHhC-CCHHHHHHHHHHHHhC--CCeEEEEEEE-ECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHH
Confidence 8877753 3468999999999998 7655444433 244 7899999999999999 88 899999999987665
No 14
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=96.83 E-value=0.0089 Score=56.19 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=73.6
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhh
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (629)
..+|.+-|.|=-.-..=...++..|+..||+++.. ..+||+|++ |++.+. ....+.++++.+++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~l-S~~~~~-~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGV-SILNGA-HLHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEE-EESSSC-HHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE-Eeechh-hHHHHHHHHHHHHh
Confidence 45777777775554555688999999999999764 468999999 555443 44567777888877
Q ss_pred CC---CCEEEECcccCCChh-hhcccccEEEcCCC-HHHHHHHHHHH
Q 006836 124 AK---KPLVVAGCVPQGSRD-LKELEGVSIVGVQQ-IDRVVEVVEET 165 (629)
Q Consensus 124 ~~---~~VVVgGc~a~~~~e-~~~~~~d~VvG~~e-~~~l~ell~~~ 165 (629)
.+ .+|++||..++...+ +.....|.+++.+. .....+.+.+.
T Consensus 96 ~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~ 142 (161)
T 2yxb_A 96 LGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKL 142 (161)
T ss_dssp TTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHH
Confidence 64 679999977654443 44566788787654 23455555544
No 15
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=94.54 E-value=0.12 Score=46.86 Aligned_cols=94 Identities=18% Similarity=0.256 Sum_probs=62.7
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhhC
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~ 124 (629)
+++.+-|.|=-.-..=...++..|+..||++++. ..+||+|++ |++.+. ....+.+.++.+++.
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~l-S~~~~~-~~~~~~~~i~~l~~~ 81 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILV-SSLYGQ-GEIDCKGLRQKCDEA 81 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEE-EECSST-HHHHHTTHHHHHHHT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE-EecCcC-cHHHHHHHHHHHHhc
Confidence 3566666654444445678889999999998753 468999999 555543 344567777777765
Q ss_pred C---CCEEEECccc---CCChh----hhcccccEEEcCCC
Q 006836 125 K---KPLVVAGCVP---QGSRD----LKELEGVSIVGVQQ 154 (629)
Q Consensus 125 ~---~~VVVgGc~a---~~~~e----~~~~~~d~VvG~~e 154 (629)
+ .+|++||-.. +.+++ +.+...|.+++.+.
T Consensus 82 g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~ 121 (137)
T 1ccw_A 82 GLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGT 121 (137)
T ss_dssp TCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTC
T ss_pred CCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCC
Confidence 4 5699999642 22222 44566788887654
No 16
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=93.48 E-value=0.28 Score=56.30 Aligned_cols=95 Identities=13% Similarity=0.228 Sum_probs=69.3
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhh
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (629)
..+|.+-|.|--.-..=...++..|+..||++++. ..+||+|+|++ . .......+..+++.+++
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSs-l-~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSS-L-AGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEE-C-SSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEee-e-cHhHHHHHHHHHHHHHh
Confidence 46899999997755556678899999999999764 36899999944 2 22334457778888887
Q ss_pred CCC---CEEEECcccCCChh-hhcccccEEEcCCC
Q 006836 124 AKK---PLVVAGCVPQGSRD-LKELEGVSIVGVQQ 154 (629)
Q Consensus 124 ~~~---~VVVgGc~a~~~~e-~~~~~~d~VvG~~e 154 (629)
.|. +|++||-.+....+ +.+...|.+++.+.
T Consensus 674 ~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f~~gt 708 (727)
T 1req_A 674 LGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGT 708 (727)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHTTEEEEECTTC
T ss_pred cCCCCCEEEEcCCCccccHHHHHhCCCCEEEcCCc
Confidence 764 79999966554433 45667788888654
No 17
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=93.06 E-value=0.51 Score=54.48 Aligned_cols=94 Identities=13% Similarity=0.261 Sum_probs=68.2
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhh
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (629)
..+|.+-|.|--.-..=...++..|+..||++++. ..+||+|+|++ ........+..+++.+++
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSs--l~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVST--LAAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEE--CSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcCCCEEEEee--ecHHHHHHHHHHHHHHHh
Confidence 46899999997655556678899999999999764 36899999943 222334457778888887
Q ss_pred CCC---CEEEECcccCCChh-hhcccccEEEcCC
Q 006836 124 AKK---PLVVAGCVPQGSRD-LKELEGVSIVGVQ 153 (629)
Q Consensus 124 ~~~---~VVVgGc~a~~~~e-~~~~~~d~VvG~~ 153 (629)
.|. +|++||-.+....+ +.+...|.+++.+
T Consensus 682 ~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f~pg 715 (762)
T 2xij_A 682 LGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPG 715 (762)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTT
T ss_pred cCCCCCEEEEeCCCCcccHHHHHhCCCCEEeCCC
Confidence 765 78999955554333 4566778888754
No 18
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=92.58 E-value=1.4 Score=44.85 Aligned_cols=147 Identities=10% Similarity=0.101 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (629)
...+.++.++-++.|.+.|+..|.+.+.....|-... ....++++.+.+ .+ ...+.. .-+. .+ .+...
T Consensus 21 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~-~~~~e~~~~i~~-~~---~~~v~~--l~~n--~~---~i~~a 88 (295)
T 1ydn_A 21 RFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQL-ADSREVMAGIRR-AD---GVRYSV--LVPN--MK---GYEAA 88 (295)
T ss_dssp SCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGG-TTHHHHHHHSCC-CS---SSEEEE--ECSS--HH---HHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEccCcCccccccc-cCHHHHHHHHHh-CC---CCEEEE--EeCC--HH---HHHHH
Confidence 4589999999999999999999998764322221100 134566666533 11 223322 2232 12 23333
Q ss_pred HhCCCcccccccccCCCCHHHHH-hhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EcCCCC---CHHHHHHHHHH
Q 006836 299 LRHPCVYSFLHVPVQSGSDAVLS-AMNRE--YTLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTVNL 370 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgsd~vLk-~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~I--vGfPGE---Teedf~eTl~f 370 (629)
.+.+ +..+++.+ ++|+.-.+ .+++. ...+.+.++++.+++. |+.+.+.+. +|.|.+ +.+.+.+.++.
T Consensus 89 ~~~G--~~~V~i~~-~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~ 163 (295)
T 1ydn_A 89 AAAH--ADEIAVFI-SASEGFSKANINCTIAESIERLSPVIGAAIND--GLAIRGYVSCVVECPYDGPVTPQAVASVTEQ 163 (295)
T ss_dssp HHTT--CSEEEEEE-ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECSSEETTTEECCHHHHHHHHHH
T ss_pred HHCC--CCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 3332 56777754 56665553 34443 2556677889999999 999988777 454543 56777777777
Q ss_pred HHhcCCCeEEEE
Q 006836 371 IKEYKFPQVHIS 382 (629)
Q Consensus 371 l~~l~~d~v~i~ 382 (629)
+.+.+.+.+.+.
T Consensus 164 ~~~~G~d~i~l~ 175 (295)
T 1ydn_A 164 LFSLGCHEVSLG 175 (295)
T ss_dssp HHHHTCSEEEEE
T ss_pred HHhcCCCEEEec
Confidence 779999988877
No 19
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=92.44 E-value=2.5 Score=43.13 Aligned_cols=145 Identities=10% Similarity=0.123 Sum_probs=93.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~ 296 (629)
...+.++.++-++.|.+.|++.|.+.+. ...+..+ .+..++++.+.+ .+ + ..+.. +-+. . +.+.
T Consensus 22 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~---~~~~~~p~~~d~~~~~~~~~~-~~--~-~~~~~--l~~~--~---~~i~ 87 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSEAGLSVIETTSF---VSPKWVPQMGDHTEVLKGIQK-FP--G-INYPV--LTPN--L---KGFE 87 (298)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEECCEEC---CCTTTCGGGTTHHHHHHHSCC-CT--T-CBCCE--ECCS--H---HHHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCC---cCcccccccCCHHHHHHHHhh-CC--C-CEEEE--EcCC--H---HhHH
Confidence 4578999999999999999999988752 2221111 233445444432 21 1 12222 2232 1 2233
Q ss_pred HHHhCCCcccccccccCCCCHH-HHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EcCCCC---CHHHHHHHH
Q 006836 297 EVLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTV 368 (629)
Q Consensus 297 ~l~~~~~~~~~l~IGlESgsd~-vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~I--vGfPGE---Teedf~eTl 368 (629)
..++.+ ...+++.+ +.|+. ..+.+++. ...+.+.+.++.++++ |+.+..+++ +|.|.+ +.+.+.+.+
T Consensus 88 ~a~~ag--~~~v~i~~-~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~--G~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (298)
T 2cw6_A 88 AAVAAG--AKEVVIFG-AASELFTKKNINCSIEESFQRFDAILKAAQSA--NISVRGYVSCALGCPYEGKISPAKVAEVT 162 (298)
T ss_dssp HHHHTT--CSEEEEEE-ESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHT--TCEEEEEEETTTCBTTTBSCCHHHHHHHH
T ss_pred HHHHCC--CCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence 334332 57788855 55554 44667765 3667888999999999 999999988 444532 678888889
Q ss_pred HHHHhcCCCeEEEE
Q 006836 369 NLIKEYKFPQVHIS 382 (629)
Q Consensus 369 ~fl~~l~~d~v~i~ 382 (629)
+.+.+++.+.+.+.
T Consensus 163 ~~~~~~Ga~~i~l~ 176 (298)
T 2cw6_A 163 KKFYSMGCYEISLG 176 (298)
T ss_dssp HHHHHTTCSEEEEE
T ss_pred HHHHHcCCCEEEec
Confidence 99999999988776
No 20
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=91.90 E-value=0.55 Score=45.39 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=60.3
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhh
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (629)
..+|-+.|.+=-.-..-...++..|+..||++.+. ..++|+|++ |++.+.. ...+.+.++++++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~l-S~~~~~~-~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGM-SALLTTT-MMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEE-ECCSGGG-THHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-ecccccc-HHHHHHHHHHHHh
Confidence 34666655554444455788999999999998753 358999999 5555543 3467788888877
Q ss_pred CC----CCEEEECcccCCChhh-hcccccEE
Q 006836 124 AK----KPLVVAGCVPQGSRDL-KELEGVSI 149 (629)
Q Consensus 124 ~~----~~VVVgGc~a~~~~e~-~~~~~d~V 149 (629)
.+ .+|++||..++ +++ ..+..|.+
T Consensus 166 ~~~~~~~~v~vGG~~~~--~~~~~~~gad~~ 194 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLS--QDFADEIGADGY 194 (210)
T ss_dssp TTCGGGCEEEEESTTCC--HHHHHHHTCSEE
T ss_pred cCCCCCCeEEEECCCCC--HHHHHHcCCeEE
Confidence 64 68999998765 443 34445543
No 21
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=91.03 E-value=1.5 Score=43.89 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=67.8
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhh
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (629)
.++|-+.|.+=-.-..-...++..|+..||++.+. ..++|+|++ |++.+.. ...+.++++++++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~l-S~l~~~~-~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTG-TALMTTT-MYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEE-ECCCTTT-TTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-EeeccCC-HHHHHHHHHHHHh
Confidence 45676666554444456778899999999998642 358999999 5555433 3467788888877
Q ss_pred CC--CCEEEECcccCCChhh-hcccccEEEcCCCHHHHHHHHHHHhc
Q 006836 124 AK--KPLVVAGCVPQGSRDL-KELEGVSIVGVQQIDRVVEVVEETLK 167 (629)
Q Consensus 124 ~~--~~VVVgGc~a~~~~e~-~~~~~d~VvG~~e~~~l~ell~~~~~ 167 (629)
.+ .+|++||..++ ++. ..+..| +.+... ...++++.....
T Consensus 201 ~~~~~~v~vGG~~~~--~~~~~~igad-~~~~da-~~av~~~~~l~~ 243 (258)
T 2i2x_B 201 NGIKIPFACGGGAVN--QDFVSQFALG-VYGEEA-ADAPKIADAIIA 243 (258)
T ss_dssp TTCCCCEEEESTTCC--HHHHHTSTTE-EECSST-THHHHHHHHHHT
T ss_pred cCCCCcEEEECccCC--HHHHHHcCCe-EEECCH-HHHHHHHHHHHc
Confidence 65 68999998776 443 234444 344433 345566665543
No 22
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=90.03 E-value=1.5 Score=44.38 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=60.6
Q ss_pred CceEEEEecCcccChhhHHHHHHH--------HHhc-CceeeCC--------------CCCCCEEEEeecccccc--hHH
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQ--------LSAF-GYALTDN--------------SEEADIWLINTCTVKSP--SQS 112 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~--------L~~~-G~~~~~~--------------~~~ADlviINTCtv~~~--ae~ 112 (629)
..+|-+-|.|=-.-..=-..++.. |+.+ ||++++- ..+||+|++ |++.+.. ...
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~Vgl-S~l~t~~~~~~~ 198 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLV-SQTVTQKNVHIQ 198 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEE-ECCCCTTSHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE-EeecCCccchHH
Confidence 345544444322222234445555 8999 9998763 568999999 6776651 345
Q ss_pred HHHHHHHHHhhCC----CCEEEECcccCCChh-hhcccccEEEcCCC
Q 006836 113 AMDTLIAKCKSAK----KPLVVAGCVPQGSRD-LKELEGVSIVGVQQ 154 (629)
Q Consensus 113 ~~~~~ir~~k~~~----~~VVVgGc~a~~~~e-~~~~~~d~VvG~~e 154 (629)
.+.+.++.+++.+ .+|++||... .++ ..++..|.+.+...
T Consensus 199 ~~~~~i~~L~~~g~~~~i~vivGG~~~--~~~~a~~iGad~~~~da~ 243 (262)
T 1xrs_B 199 NMTHLIELLEAEGLRDRFVLLCGGPRI--NNEIAKELGYDAGFGPGR 243 (262)
T ss_dssp HHHHHHHHHHHTTCGGGSEEEEECTTC--CHHHHHTTTCSEEECTTC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCcC--CHHHHHHcCCeEEECCch
Confidence 6677788887765 5799999753 455 34667788887664
No 23
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=88.23 E-value=9.6 Score=38.85 Aligned_cols=145 Identities=13% Similarity=0.112 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~--~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~ 296 (629)
...+.++.++-++.|.+.|+..|..... ...... -.+..++++.+.+ . ....+... -+. .+ .+.
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~---~~~~~~~~~~d~~~~~~~~~~-~---~~~~~~~l--~~~--~~---~i~ 90 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLDYIEVGSF---VSPKWVPQMAGSAEVFAGIRQ-R---PGVTYAAL--APN--LK---GFE 90 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEEEEEEC---SCTTTCGGGTTHHHHHHHSCC-C---TTSEEEEE--CCS--HH---HHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCC---cCccccccccCHHHHHHHhhh-c---CCCEEEEE--eCC--HH---HHH
Confidence 4678999999999999999999988752 111111 0233455554432 1 12233322 231 12 233
Q ss_pred HHHhCCCcccccccccCCCCH-HHHHhhcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEc--CCCC---CHHHHHHHH
Q 006836 297 EVLRHPCVYSFLHVPVQSGSD-AVLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICG--FPGE---TDEDFNQTV 368 (629)
Q Consensus 297 ~l~~~~~~~~~l~IGlESgsd-~vLk~M~R~~--t~e~~~e~I~~lr~~~pgi~i~td~IvG--fPGE---Teedf~eTl 368 (629)
..++.+ +..+++.. +.|+ ...+.+++.. ..+.+.+.++.++++ |+.+.+.+..- .|.+ +++.+.+.+
T Consensus 91 ~a~~aG--~~~v~i~~-~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~ 165 (302)
T 2ftp_A 91 AALESG--VKEVAVFA-AASEAFSQRNINCSIKDSLERFVPVLEAARQH--QVRVRGYISCVLGCPYDGDVDPRQVAWVA 165 (302)
T ss_dssp HHHHTT--CCEEEEEE-ESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCBTTTBCCCHHHHHHHH
T ss_pred HHHhCC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence 334332 56777655 4444 3446676653 667788899999999 99998888654 3432 456667777
Q ss_pred HHHHhcCCCeEEEE
Q 006836 369 NLIKEYKFPQVHIS 382 (629)
Q Consensus 369 ~fl~~l~~d~v~i~ 382 (629)
+.+.+.+.+.+.+-
T Consensus 166 ~~~~~~G~d~i~l~ 179 (302)
T 2ftp_A 166 RELQQMGCYEVSLG 179 (302)
T ss_dssp HHHHHTTCSEEEEE
T ss_pred HHHHHcCCCEEEEe
Confidence 77779999987775
No 24
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=86.75 E-value=6.3 Score=40.48 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~ 296 (629)
...+.++.++-++.|.+.|++.|-+.+. ...+... .+..++++.+.+ . ...++..+.|. .+. +.
T Consensus 23 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~---~~~~~~p~~~d~~~~~~~~~~-~-----~~~~~~~l~~~--~~~---i~ 88 (307)
T 1ydo_A 23 VWIATEDKITWINQLSRTGLSYIEITSF---VHPKWIPALRDAIDVAKGIDR-E-----KGVTYAALVPN--QRG---LE 88 (307)
T ss_dssp SCCCHHHHHHHHHHHHTTTCSEEEEEEC---SCTTTCGGGTTHHHHHHHSCC-C-----TTCEEEEECCS--HHH---HH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCC---cCcccccccCCHHHHHHHhhh-c-----CCCeEEEEeCC--HHh---HH
Confidence 5679999999999999999999988752 1111111 233444444322 1 22233323342 222 33
Q ss_pred HHHhCCCcccccccccCCCCHHH-HHhhcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcC--CC---CCHHHHHHHH
Q 006836 297 EVLRHPCVYSFLHVPVQSGSDAV-LSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGF--PG---ETDEDFNQTV 368 (629)
Q Consensus 297 ~l~~~~~~~~~l~IGlESgsd~v-Lk~M~R~~--t~e~~~e~I~~lr~~~pgi~i~td~IvGf--PG---ETeedf~eTl 368 (629)
..++.+ ...+++.+ +.|+.- .+.+++.. ..+.+.+.++.+++. |+.+..+++.-| |. -+.+.+.+.+
T Consensus 89 ~a~~~g--~~~v~i~~-~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 163 (307)
T 1ydo_A 89 NALEGG--INEACVFM-SASETHNRKNINKSTSESLHILKQVNNDAQKA--NLTTRAYLSTVFGCPYEKDVPIEQVIRLS 163 (307)
T ss_dssp HHHHHT--CSEEEEEE-ESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCBTTTBCCCHHHHHHHH
T ss_pred HHHhCC--cCEEEEEe-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEEEecCCcCCCCCHHHHHHHH
Confidence 233322 56777766 666643 35555542 456778889999999 999988887655 43 2567788888
Q ss_pred HHHHhcCCCeEEEE
Q 006836 369 NLIKEYKFPQVHIS 382 (629)
Q Consensus 369 ~fl~~l~~d~v~i~ 382 (629)
+.+.+.+.+.+.+-
T Consensus 164 ~~~~~~Ga~~i~l~ 177 (307)
T 1ydo_A 164 EALFEFGISELSLG 177 (307)
T ss_dssp HHHHHHTCSCEEEE
T ss_pred HHHHhcCCCEEEEc
Confidence 88899999877764
No 25
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=86.56 E-value=1.4 Score=49.68 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=52.3
Q ss_pred HHHHHhcCceeeCC--------------CCCCCEEEEeecccccc--hHHHHHHHHHHHhhCCC----CEEEECcccCCC
Q 006836 79 AGQLSAFGYALTDN--------------SEEADIWLINTCTVKSP--SQSAMDTLIAKCKSAKK----PLVVAGCVPQGS 138 (629)
Q Consensus 79 ~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~--ae~~~~~~ir~~k~~~~----~VVVgGc~a~~~ 138 (629)
+..|+..||++++. ..+||+|+| |+..+.. .-..+.++++.+++.|. +|++||-.++
T Consensus 627 a~~LE~aGFEVIDLGvdVPpEeIVeAA~EedADVVGL-SsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~t-- 703 (763)
T 3kp1_A 627 HGGIEKYGVEVHYLGTSVPVEKLVDAAIELKADAILA-STIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVT-- 703 (763)
T ss_dssp TTCGGGGTCEEEECCSSBCHHHHHHHHHHTTCSEEEE-ECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCC--
T ss_pred HHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCC--
Confidence 46789999999764 568999999 5566542 34566777888877763 5889997754
Q ss_pred hhh-hcccccEEEcCCC
Q 006836 139 RDL-KELEGVSIVGVQQ 154 (629)
Q Consensus 139 ~e~-~~~~~d~VvG~~e 154 (629)
+++ .++..|.+.+.+.
T Consensus 704 qd~AkeIGADa~f~DAT 720 (763)
T 3kp1_A 704 PEVAVKQGVDAGFGRGS 720 (763)
T ss_dssp HHHHHTTTCSEEECTTC
T ss_pred HHHHHHcCCcEEECCcc
Confidence 453 4566788887655
No 26
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=82.69 E-value=4.4 Score=31.94 Aligned_cols=56 Identities=27% Similarity=0.429 Sum_probs=42.6
Q ss_pred CCCcEEEEEEEEEecCCceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 006836 423 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 423 ~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v 482 (629)
..|..+++.|+....+| .-+|+... ..|++++ .++|+.|.++|+...+.+..|+++
T Consensus 12 ~~~~~~~~~I~~l~~~G-~Gva~~~g-~~vfV~~--alPGE~V~v~i~k~kk~~~~a~~~ 67 (68)
T 1yez_A 12 EEGEVYDVTIQDIARQG-DGIARIEG-FVIFVPG--TKVGDEVRIKVERVLPKFAFASVV 67 (68)
T ss_dssp CTTEEEEEECCEEETTT-EEEEEETT-EEEEEES--CCTTCEEEEEEEEECSSCEEEEEC
T ss_pred CCCCEEEEEEEEcCCCc-cEEEEECC-EEEECcC--CCCCCEEEEEEEEecCCEEEEEEc
Confidence 35777888888876555 45687665 4577764 478999999999998888888875
No 27
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=81.85 E-value=1.9 Score=48.79 Aligned_cols=101 Identities=10% Similarity=0.085 Sum_probs=66.7
Q ss_pred CceEEEEecCcc-cChhhHHHHHHHHHhcCceeeCC-------------CCCCCEEEEeecccccchHHHHHHHHHHHhh
Q 006836 58 TETIYMKTFGCS-HNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (629)
Q Consensus 58 ~~~v~i~TlGC~-~N~~dse~m~~~L~~~G~~~~~~-------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (629)
..++.+-++|-- .-..=...++..|+..||++++. .++||+|+| |+........+..+++.+++
T Consensus 509 ~~kvvLatLg~Da~Hd~ga~~va~~l~~aGfeVi~~g~~~tee~v~aa~e~~adiv~l--Ssl~~~~~~~~~~v~~~Lk~ 586 (637)
T 1req_B 509 RPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADL--CSSAKVYAQQGLEVAKALKA 586 (637)
T ss_dssp CCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEECCCHHHHHHHHHHHTCSEEEE--ECCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhCCchhhhhhHHHHHHHHHhCCeeEEeCCCCCCHHHHHHHHhcCCCEEEE--ecccHHHHHHHHHHHHHHHh
Confidence 457899999953 22333568889999999998874 358999999 33333334457778888888
Q ss_pred CCC-CEEEECcccCCC----hhhhcccccEEEcCCCHHHHHHHHHH
Q 006836 124 AKK-PLVVAGCVPQGS----RDLKELEGVSIVGVQQIDRVVEVVEE 164 (629)
Q Consensus 124 ~~~-~VVVgGc~a~~~----~e~~~~~~d~VvG~~e~~~l~ell~~ 164 (629)
.|. +|+|||- |... +++.. ..|.++..+. ...+++.+
T Consensus 587 aG~~~V~vgG~-P~~d~~~~~~~~~-G~D~~~~~g~--~~~~~l~~ 628 (637)
T 1req_B 587 AGAKALYLSGA-FKEFGDDAAEAEK-LIDGRLFMGM--DVVDTLSS 628 (637)
T ss_dssp TTCSEEEEESC-GGGGGGGHHHHHH-HCCCEECTTC--CHHHHHHH
T ss_pred CCCCeEEEeCC-CCccchhhHHHHh-ccceEecCCc--CHHHHHHH
Confidence 885 6889994 3222 23445 5577776654 23444444
No 28
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=81.52 E-value=12 Score=38.13 Aligned_cols=145 Identities=8% Similarity=-0.027 Sum_probs=86.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (629)
...+.++.++-++.|.+.|++.|-.... .... .-.+.++.+.+..+ + ..+ ..+-+.. .+.++...+.
T Consensus 22 ~~~~~~~K~~i~~~L~~~Gv~~IE~g~p---~~~~----~d~e~v~~i~~~~~--~-~~i--~~l~~~~-~~di~~a~~~ 88 (293)
T 3ewb_X 22 VNFDVKEKIQIALQLEKLGIDVIEAGFP---ISSP----GDFECVKAIAKAIK--H-CSV--TGLARCV-EGDIDRAEEA 88 (293)
T ss_dssp -CCCHHHHHHHHHHHHHHTCSEEEEECG---GGCH----HHHHHHHHHHHHCC--S-SEE--EEEEESS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCC---CCCc----cHHHHHHHHHHhcC--C-CEE--EEEecCC-HHHHHHHHHH
Confidence 4689999999999999999999987642 1111 11345666666543 2 222 2121211 1223223333
Q ss_pred HhCCCcccccccccCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 299 LRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgsd~v-Lk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
+...+ ...+++-+ |.|+-- .+.+++. ...+.+.+.++.+++. |..+..+...+. --+.+.+.+.++.+.+++
T Consensus 89 ~~~ag-~~~v~i~~-~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~~d~~-~~~~~~~~~~~~~~~~~G 163 (293)
T 3ewb_X 89 LKDAV-SPQIHIFL-ATSDVHMEYKLKMSRAEVLASIKHHISYARQK--FDVVQFSPEDAT-RSDRAFLIEAVQTAIDAG 163 (293)
T ss_dssp HTTCS-SEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTT--CSCEEEEEETGG-GSCHHHHHHHHHHHHHTT
T ss_pred HhhcC-CCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhC--CCEEEEEeccCC-CCCHHHHHHHHHHHHHcC
Confidence 33333 56777765 556543 3445543 2445677778888888 877765554332 235677788889999999
Q ss_pred CCeEEE
Q 006836 376 FPQVHI 381 (629)
Q Consensus 376 ~d~v~i 381 (629)
.+.+.+
T Consensus 164 ~~~i~l 169 (293)
T 3ewb_X 164 ATVINI 169 (293)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 987665
No 29
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=81.25 E-value=1.8 Score=42.24 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=52.2
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEE--eecccccchHHHHHHHHHHH
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLI--NTCTVKSPSQSAMDTLIAKC 121 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviI--NTCtv~~~ae~~~~~~ir~~ 121 (629)
..++-+-|.+=-.-.-=-..++..|+..||++++- ..+||+|++ ++-.. +....+.+.++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~--~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMT--TSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSH--HHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhccc--CcHHHHHHHHHHH
Confidence 35666655443333334577888999999998764 468999999 54332 3444577778888
Q ss_pred hhCC----CCEEEECcccC
Q 006836 122 KSAK----KPLVVAGCVPQ 136 (629)
Q Consensus 122 k~~~----~~VVVgGc~a~ 136 (629)
++.+ .+|++||-..+
T Consensus 170 ~~~~~~~~v~v~vGG~~~~ 188 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVS 188 (215)
T ss_dssp HHTTCGGGSEEEEESSSCC
T ss_pred HHcCCCCCCEEEEECCCCC
Confidence 7765 47999997655
No 30
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=80.75 E-value=6.1 Score=31.38 Aligned_cols=56 Identities=25% Similarity=0.371 Sum_probs=42.2
Q ss_pred CCCcEEEEEEEEEecCCceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 006836 423 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 482 (629)
Q Consensus 423 ~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v 482 (629)
..|..+++.|+....+| .-+|+... ..|++++ .++|+.|.++|+...+.+..|+++
T Consensus 14 ~~~~~~~v~I~~l~~~G-~Gva~~~g-~~vfV~~--alPGE~V~v~i~k~kk~~~~a~~~ 69 (70)
T 1yvc_A 14 EAGKEYEVTIEDMGKGG-DGIARIDG-FVVFVPN--AEKGSVINVKVTAVKEKFAFAERV 69 (70)
T ss_dssp CTTCEEEEECCEECTTS-CEEEEETT-EEEEETT--CCTTCEEEEEEEEECSSCEEEEEC
T ss_pred cCCCEEEEEEEEcCCCc-cEEEEECC-EEEEccC--CCCCCEEEEEEEEeeCCeEEEEEe
Confidence 35778888888876554 34687665 4577764 578999999999998888888764
No 31
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=80.53 E-value=12 Score=38.83 Aligned_cols=138 Identities=12% Similarity=0.153 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEe-----ecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcch-hHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLS-----SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI-LEHL 292 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~-----g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i-~~~l 292 (629)
...+.++.++-++.|.+.|+..|-+. ..-.+.+|... ..-.+.++.+.+..+ + ..+.. ++.|..- .+.
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~-~~~~e~l~~i~~~~~--~-~~i~~-l~~p~~~~~~~- 98 (345)
T 1nvm_A 25 HQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGR-HTDLEYIEAVAGEIS--H-AQIAT-LLLPGIGSVHD- 98 (345)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCS-SCHHHHHHHHHTTCS--S-SEEEE-EECBTTBCHHH-
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCC-CCHHHHHHHHHhhCC--C-CEEEE-EecCCcccHHH-
Confidence 45789999999999999999999983 11112233321 345678888876443 2 22222 1144221 222
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 006836 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372 (629)
Q Consensus 293 ~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~ 372 (629)
+....+. + ...+++.+ +.++ .+...+.++.++++ |+.+...+.-. |.-+++.+.+.++.+.
T Consensus 99 --i~~a~~a-G-vd~v~I~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~a-~~~~~e~~~~ia~~~~ 159 (345)
T 1nvm_A 99 --LKNAYQA-G-ARVVRVAT-HCTE-----------ADVSKQHIEYARNL--GMDTVGFLMMS-HMIPAEKLAEQGKLME 159 (345)
T ss_dssp --HHHHHHH-T-CCEEEEEE-ETTC-----------GGGGHHHHHHHHHH--TCEEEEEEEST-TSSCHHHHHHHHHHHH
T ss_pred --HHHHHhC-C-cCEEEEEE-eccH-----------HHHHHHHHHHHHHC--CCEEEEEEEeC-CCCCHHHHHHHHHHHH
Confidence 2222222 2 45556653 3332 24678889999999 99888777654 5677888999999999
Q ss_pred hcCCCeEEE
Q 006836 373 EYKFPQVHI 381 (629)
Q Consensus 373 ~l~~d~v~i 381 (629)
+.+.+.+.+
T Consensus 160 ~~Ga~~i~l 168 (345)
T 1nvm_A 160 SYGATCIYM 168 (345)
T ss_dssp HHTCSEEEE
T ss_pred HCCCCEEEE
Confidence 999886665
No 32
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=77.17 E-value=6.5 Score=44.04 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=55.5
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC--------------CCCCCEEEEeecccccchHHHHHHHHHHHhh
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (629)
..+|-+.|.+=-.-..-...++..|+..||++++. ..++|+|++ |++.+. ....+.+.++++++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgL-S~l~t~-~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGL-SGLITP-SLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEE-ECCSTH-HHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-EecCCC-CHHHHHHHHHHHHH
Confidence 45666655443333445678889999999998653 458999999 555543 34567788888877
Q ss_pred CC--CCEEEECcccCC
Q 006836 124 AK--KPLVVAGCVPQG 137 (629)
Q Consensus 124 ~~--~~VVVgGc~a~~ 137 (629)
.+ .+|+|||-..+.
T Consensus 176 ~g~~i~ViVGGa~~~~ 191 (579)
T 3bul_A 176 QGFTIPLLIGGATTSK 191 (579)
T ss_dssp TTCCSCEEEESTTCCH
T ss_pred cCCCCeEEEEccccch
Confidence 76 689999986654
No 33
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=77.05 E-value=10 Score=40.50 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=46.1
Q ss_pred cEEEEEEEEEecCCceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEeccccccc
Q 006836 426 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDD 490 (629)
Q Consensus 426 ~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~~~~~ 490 (629)
..+++-|+....+| .-+||..+ ..|+|++ .++|+.|.|+|++.++.+..|++++..+....
T Consensus 15 ~~~~~~i~~l~~~G-~Gv~~~~g-~~vfV~~--alpGe~v~~~i~~~~~~~~~~~~~~i~~~S~~ 75 (433)
T 1uwv_A 15 QIITVSVNDLDSFG-QGVARHNG-KTLFIPG--LLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 (433)
T ss_dssp CCEEEEEEEECTTS-EEEEEETT-EEEEEET--CCTTCEEEEEEEEECSSEEEEEEEEECCCCTT
T ss_pred CEEEEEEEEecCCC-ceEEEeCC-EEEEcCC--CCCCCEEEEEEEeecCCceeEEeccccCCCCC
Confidence 45678888886655 45688654 4577764 57899999999999999999999887654443
No 34
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=74.56 E-value=24 Score=36.51 Aligned_cols=143 Identities=10% Similarity=0.083 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHH-HHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh---CCCCCCceEEEeecCCcchhHHHHH
Q 006836 219 GSYTVESLVGRVR-TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE---LPPDGSTMLRIGMTNPPFILEHLKE 294 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~-~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~---i~~~~~~~iri~~~~p~~i~~~l~e 294 (629)
...+.++.++-++ .|.+.|++.|-+.+. ....+ -.+.++++.+. +. .....++..+.+.. +.
T Consensus 36 ~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~---~~~~~----~~~~v~~~~~~~~~~~--~~~~~~i~~l~~~~--~~--- 101 (337)
T 3ble_A 36 VSFSTSEKLNIAKFLLQKLNVDRVEIASA---RVSKG----ELETVQKIMEWAATEQ--LTERIEILGFVDGN--KT--- 101 (337)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCSEEEEEET---TSCTT----HHHHHHHHHHHHHHTT--CGGGEEEEEESSTT--HH---
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEeCC---CCChh----HHHHHHHHHhhhhhhc--cCCCCeEEEEccch--hh---
Confidence 4589999999999 999999999987642 11111 13455555541 11 12233444333321 12
Q ss_pred HHHHHhCCCcccccccccCCCCH-HHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC---CCHHHHHHHH
Q 006836 295 IAEVLRHPCVYSFLHVPVQSGSD-AVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPG---ETDEDFNQTV 368 (629)
Q Consensus 295 l~~l~~~~~~~~~l~IGlESgsd-~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG---ETeedf~eTl 368 (629)
+...+..+ ...+++-+ +.|+ ...+.+++. ...+.+.+.++.+++. |+.+..++.. ||. -+.+.+.+.+
T Consensus 102 i~~a~~~g--~~~v~i~~-~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~~~-~~~~~~~~~~~~~~~~ 175 (337)
T 3ble_A 102 VDWIKDSG--AKVLNLLT-KGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKS--GLKINVYLED-WSNGFRNSPDYVKSLV 175 (337)
T ss_dssp HHHHHHHT--CCEEEEEE-ECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHT--TCEEEEEEET-HHHHHHHCHHHHHHHH
T ss_pred HHHHHHCC--CCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEE-CCCCCcCCHHHHHHHH
Confidence 22222222 45666655 3454 444666664 3557788888999999 9988877764 222 2466677778
Q ss_pred HHHHhcCCCeEEE
Q 006836 369 NLIKEYKFPQVHI 381 (629)
Q Consensus 369 ~fl~~l~~d~v~i 381 (629)
+.+.+++.+.+.+
T Consensus 176 ~~~~~~Ga~~i~l 188 (337)
T 3ble_A 176 EHLSKEHIERIFL 188 (337)
T ss_dssp HHHHTSCCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 8888889887665
No 35
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=69.91 E-value=23 Score=37.34 Aligned_cols=146 Identities=11% Similarity=0.027 Sum_probs=82.4
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
..+.+.++-++-++.|.+.|++.|-.... .... .=.+.++++.+.++ + ..+.. ...+. .+.++...+
T Consensus 28 ~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p---~~~~----~d~e~v~~i~~~~~--~-~~i~~-l~r~~--~~di~~a~~ 94 (370)
T 3rmj_A 28 GAAMTKEEKIRVARQLEKLGVDIIEAGFA---AASP----GDFEAVNAIAKTIT--K-STVCS-LSRAI--ERDIRQAGE 94 (370)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEEEEG---GGCH----HHHHHHHHHHTTCS--S-SEEEE-EEESS--HHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEeCC---CCCH----HHHHHHHHHHHhCC--C-CeEEE-EecCC--HHHHHHHHH
Confidence 34789999999999999999999887542 1111 11355666665443 2 22221 12221 222222223
Q ss_pred HHhCCCcccccccccCCCCHH-HHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 298 VLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~-vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
.+...+ ...+++-+ |.|+- +.+.+++. ...+.+.+.++.++++ |..+..+...+. --+.+.+.+.++.+.+.
T Consensus 95 al~~ag-~~~v~if~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~ed~~-r~~~~~~~~~~~~~~~~ 169 (370)
T 3rmj_A 95 AVAPAP-KKRIHTFI-ATSPIHMEYKLKMKPKQVIEAAVKAVKIAREY--TDDVEFSCEDAL-RSEIDFLAEICGAVIEA 169 (370)
T ss_dssp HHTTSS-SEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTT--CSCEEEEEETGG-GSCHHHHHHHHHHHHHH
T ss_pred HHhhCC-CCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEecCCCC-ccCHHHHHHHHHHHHHc
Confidence 333333 56777755 55553 34556553 2345566667777777 765543333222 23456667777888888
Q ss_pred CCCeEEE
Q 006836 375 KFPQVHI 381 (629)
Q Consensus 375 ~~d~v~i 381 (629)
+.+.+.+
T Consensus 170 Ga~~i~l 176 (370)
T 3rmj_A 170 GATTINI 176 (370)
T ss_dssp TCCEEEE
T ss_pred CCCEEEe
Confidence 9887664
No 36
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=68.11 E-value=5.9 Score=42.52 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=42.4
Q ss_pred CCcEEEEEEEEEecCCceEEEEecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEecccccccc
Q 006836 424 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDK 491 (629)
Q Consensus 424 vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~~~~~~ 491 (629)
.|+.+++.|+....+| .-+|| .|+|++ .++|+.|+|+|++.++.+..|++++..+.....
T Consensus 17 ~~~~~~~~I~~l~~~G-~Gv~~-----~vfV~~--alPGe~v~~~i~~~k~~~~~a~~~~v~~~S~~R 76 (425)
T 2jjq_A 17 RGSHMRGVIRKLNDDG-FGVLK-----GILVPF--SAPGDEIIVERVERVKKRRVASQWKLVRSSPLR 76 (425)
T ss_dssp ----CEEECCEECTTS-CEEET-----TEEETT--CCTTCEEEEEEEEESSSSEEEEEEEEEECCTTB
T ss_pred CCCEEEEEEEEeccCC-eEEEE-----EEEeCC--CCCCCEEEEEEEEecCCceEEEEcccCCCCccc
Confidence 3556778888876554 34576 677764 578999999999999999999988776544433
No 37
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=67.12 E-value=18 Score=37.32 Aligned_cols=144 Identities=12% Similarity=-0.011 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (629)
.+.+.++-++-++.|.+.|++.|-... +.... .. .+.++++.+.++ + . ++..+-+.. .+.++...+.
T Consensus 23 ~~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~~---~d-~e~v~~i~~~~~--~-~--~i~~l~r~~-~~~i~~a~~a 89 (325)
T 3eeg_A 23 CQLNTEEKIIVAKALDELGVDVIEAGF---PVSSP---GD-FNSVVEITKAVT--R-P--TICALTRAK-EADINIAGEA 89 (325)
T ss_dssp --CCTTHHHHHHHHHHHHTCSEEEEEC---TTSCH---HH-HHHHHHHHHHCC--S-S--EEEEECCSC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH---hH-HHHHHHHHHhCC--C-C--EEEEeecCC-HHHHHHHHHh
Confidence 467889999999999999999998753 22221 11 345566766553 2 2 232222211 1222222333
Q ss_pred HhCCCcccccccccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 299 LRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
+...+ ...+++-+ |.|+--. +.+++. ...+.+.+.++.+++. |+.+..+...+. --+.+.+.+.++.+.+.+
T Consensus 90 l~~ag-~~~v~i~~-s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~~d~~-~~~~~~~~~~~~~~~~~G 164 (325)
T 3eeg_A 90 LRFAK-RSRIHTGI-GSSDIHIEHKLRSTRENILEMAVAAVKQAKKV--VHEVEFFCEDAG-RADQAFLARMVEAVIEAG 164 (325)
T ss_dssp HTTCS-SEEEEEEE-ECSHHHHC----CCCTTGGGTTHHHHHHHHTT--SSEEEEEEETGG-GSCHHHHHHHHHHHHHHT
T ss_pred hcccC-CCEEEEEe-cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEccccc-cchHHHHHHHHHHHHhcC
Confidence 33333 56666644 4455433 445543 5778899999999999 887654433332 124566667777788889
Q ss_pred CCeEE
Q 006836 376 FPQVH 380 (629)
Q Consensus 376 ~d~v~ 380 (629)
.+.+.
T Consensus 165 ~~~i~ 169 (325)
T 3eeg_A 165 ADVVN 169 (325)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 87654
No 38
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=65.17 E-value=37 Score=34.35 Aligned_cols=139 Identities=16% Similarity=0.188 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc------CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~------~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l 292 (629)
+..+++.+++.++.+++.|+.-|-+-++.+. -|.+. ..++..+++.+.+.. ...+.+.+.+|..+..-+
T Consensus 33 ~~~~~~~a~~~a~~~v~~GAdiIDIGgestr-Pga~~v~~~eE~~rv~pvi~~l~~~~----~~piSIDT~~~~va~aAl 107 (282)
T 1aj0_A 33 THNSLIDAVKHANLMINAGATIIDVGGESTR-PGAAEVSVEEELQRVIPVVEAIAQRF----EVWISVDTSKPEVIRESA 107 (282)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSEEEEESSCCS-TTCCCCCHHHHHHHHHHHHHHHHHHC----CCEEEEECCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCcCCHHHHHHHHHHHHHHHHhhc----CCeEEEeCCCHHHHHHHH
Confidence 4467999999999999999998888775431 12111 124556666665542 346777765554222111
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHHHHh-------------------hcCC--CC------HHHHHHHHHHHHHhCCC
Q 006836 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSA-------------------MNRE--YT------LSDFRTVVDTLIELVPG 345 (629)
Q Consensus 293 ~el~~l~~~~~~~~~l~IGlESgsd~vLk~-------------------M~R~--~t------~e~~~e~I~~lr~~~pg 345 (629)
+ ....+.+.++-+ .+++++.. |... |. .+.+.+.++.+.++ |
T Consensus 108 ----~--aGa~iINdvsg~---~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~--G 176 (282)
T 1aj0_A 108 ----K--VGAHIINDIRSL---SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQA--G 176 (282)
T ss_dssp ----H--TTCCEEEETTTT---CSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHT--T
T ss_pred ----H--cCCCEEEECCCC---CCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHc--C
Confidence 0 111122222221 23333322 1111 11 67788889999998 8
Q ss_pred CE---EEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 346 MQ---IATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 346 i~---i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
+. +..|--+|| +.|.++-.++++.+.++
T Consensus 177 i~~~~IilDPg~gf-~k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 177 IAKEKLLLDPGFGF-GKNLSHNYSLLARLAEF 207 (282)
T ss_dssp CCGGGEEEECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred CChhhEEEeCCCCc-ccCHHHHHHHHHHHHHH
Confidence 85 888988898 77877665566555544
No 39
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=64.95 E-value=31 Score=34.64 Aligned_cols=141 Identities=13% Similarity=0.035 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (629)
+..+.+.+++.++.+++.|..-|-+-++. -..+-..++..+++.+.+.. ...+.+.+.+|..+.. ..+.
T Consensus 29 ~~~~~~~a~~~a~~~v~~GAdiIDIg~~s---~~~eE~~rv~~vi~~l~~~~----~~pisIDT~~~~v~~a----al~a 97 (271)
T 2yci_X 29 LNKDPRPIQEWARRQAEKGAHYLDVNTGP---TADDPVRVMEWLVKTIQEVV----DLPCCLDSTNPDAIEA----GLKV 97 (271)
T ss_dssp HTTCCHHHHHHHHHHHHTTCSEEEEECCS---CSSCHHHHHHHHHHHHHHHC----CCCEEEECSCHHHHHH----HHHH
T ss_pred hhCCHHHHHHHHHHHHHCCCCEEEEcCCc---CchhHHHHHHHHHHHHHHhC----CCeEEEeCCCHHHHHH----HHHh
Confidence 34567999999999999999988876643 11221235666777776643 2457777666542221 1111
Q ss_pred HhCCCcccccccccCCCC--HHHHHhh----------c---CC--CC----HHHHHHHHHHHHHhCCCCE---EEEEEEE
Q 006836 299 LRHPCVYSFLHVPVQSGS--DAVLSAM----------N---RE--YT----LSDFRTVVDTLIELVPGMQ---IATDIIC 354 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgs--d~vLk~M----------~---R~--~t----~e~~~e~I~~lr~~~pgi~---i~td~Iv 354 (629)
.....+.+.++. +. + ++++... + ++ .+ .+.+.+.++.+.++ |+. +..|=.+
T Consensus 98 ~~Ga~iINdvs~--~~-d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~--Gi~~~~IilDPg~ 172 (271)
T 2yci_X 98 HRGHAMINSTSA--DQ-WKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAH--GIPMTELYIDPLI 172 (271)
T ss_dssp CCSCCEEEEECS--CH-HHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHT--TCCGGGEEEECCC
T ss_pred CCCCCEEEECCC--Cc-cccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCcccEEEecCC
Confidence 111222232222 11 2 3444331 1 21 23 55677788888888 876 8889999
Q ss_pred cCCCCCHHHHHHHHHHHHhcC
Q 006836 355 GFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 355 GfPGETeedf~eTl~fl~~l~ 375 (629)
||.|-+.+.-.++++.++.++
T Consensus 173 gfigk~~~~~~~~l~~l~~~~ 193 (271)
T 2yci_X 173 LPVNVAQEHAVEVLETIRQIK 193 (271)
T ss_dssp CCTTTSTHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHH
Confidence 988888876666776666664
No 40
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=64.58 E-value=65 Score=27.90 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhcCceeeCC-CCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCC-ChhhhcccccEEEc
Q 006836 74 DSEYMAGQLSAFGYALTDN-SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVG 151 (629)
Q Consensus 74 dse~m~~~L~~~G~~~~~~-~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~-~~e~~~~~~d~VvG 151 (629)
+-+.+.++|.+.||+..+. -..+|++++ -++..+....-+...|+.+++.|++|+.-=+|... .|....-.++.++|
T Consensus 16 ~~~~L~~~l~~~~f~~~~~~I~~~~~vIv-L~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~~l~~~a~~iV~ 94 (111)
T 1eiw_A 16 DYRVFLERLEQSGLEWRPATPEDADAVIV-LAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPPELEAVSSEVVG 94 (111)
T ss_dssp HHHHHHHHHHHHCSCEEECCSSSCSEEEE-EGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCTTHHHHCSEEEC
T ss_pred HHHHHHHHHhCCCCeeecCccccCCEEEE-EeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCHHHHhhCceecc
Confidence 6888899998779987763 567999988 56665555567777888899999998865555442 23321112678999
Q ss_pred CCCHHHHHHHHHHHh
Q 006836 152 VQQIDRVVEVVEETL 166 (629)
Q Consensus 152 ~~e~~~l~ell~~~~ 166 (629)
-.. +.+.+.+....
T Consensus 95 Wn~-~~I~~aI~~~~ 108 (111)
T 1eiw_A 95 WNP-HCIRDALEDAL 108 (111)
T ss_dssp SCH-HHHHHHHHHHH
T ss_pred CCH-HHHHHHHHhcc
Confidence 876 67888887653
No 41
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=63.65 E-value=52 Score=35.25 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=85.4
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
-.+.+.++-++-++.|.+.|+++|-... +... ....+.++.+.+. . ....+ +....+. .+. +..
T Consensus 55 ~~~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~as----p~d~~~~~~i~~~-~--~~~~v-~~~~r~~--~~d---i~~ 118 (423)
T 3ivs_A 55 NAFFDTEKKIQIAKALDNFGVDYIELTS---PVAS----EQSRQDCEAICKL-G--LKCKI-LTHIRCH--MDD---ARV 118 (423)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTS-C--CSSEE-EEEEESC--HHH---HHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEee---cccC----HHHHHHHHHHHhc-C--CCCEE-EEeeccC--hhh---HHH
Confidence 4578999999999999999999999753 2221 1224556666542 2 11222 1122332 122 222
Q ss_pred HHhCCCcccccccccCCCCHHHH-HhhcC--CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNR--EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vL-k~M~R--~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
.+.. + .+.+|+-+ |.|+--. ..+++ ....+.+.+.++.+++. |+.+..+..-++ .-+++.+.+.++.+.+.
T Consensus 119 A~~a-G-~~~V~i~~-s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~V~~~~eda~-r~d~~~~~~v~~~~~~~ 192 (423)
T 3ivs_A 119 AVET-G-VDGVDVVI-GTSQYLRKYSHGKDMTYIIDSATEVINFVKSK--GIEVRFSSEDSF-RSDLVDLLSLYKAVDKI 192 (423)
T ss_dssp HHHT-T-CSEEEEEE-EC-------------CHHHHHHHHHHHHHHTT--TCEEEEEEESGG-GSCHHHHHHHHHHHHHH
T ss_pred HHHc-C-CCEEEEEe-eccHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEccCc-CCCHHHHHHHHHHHHHh
Confidence 3333 2 56677655 3444222 22333 23467788899999999 999888877666 45778888899999999
Q ss_pred CCCeEEE
Q 006836 375 KFPQVHI 381 (629)
Q Consensus 375 ~~d~v~i 381 (629)
+.+.+.+
T Consensus 193 Ga~~i~l 199 (423)
T 3ivs_A 193 GVNRVGI 199 (423)
T ss_dssp CCSEEEE
T ss_pred CCCcccc
Confidence 9887654
No 42
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=61.80 E-value=4.8 Score=25.87 Aligned_cols=14 Identities=29% Similarity=0.767 Sum_probs=10.5
Q ss_pred cccccCCCCCCcccC
Q 006836 516 SSACSNEPDPSACGL 530 (629)
Q Consensus 516 ~~~~~~~~~~~~~~~ 530 (629)
.|.||. .++|.|+.
T Consensus 2 ~CgCs~-tgtC~Cg~ 15 (26)
T 1t2y_A 2 DCGCSG-ASSCNCGS 15 (26)
T ss_dssp CCSCSS-TTTCCCSS
T ss_pred CcccCC-CccccCCC
Confidence 577877 78888874
No 43
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=53.56 E-value=53 Score=33.48 Aligned_cols=140 Identities=14% Similarity=0.189 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CC---CHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GV---NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~--~~---~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~e 294 (629)
..+++.+++.++.+++.|+.-|-+.++.+-...... .+ ++..+++.+.+.. ...+.+.+.+|..+..-
T Consensus 59 ~~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~----~vpiSIDT~~~~V~~aA--- 131 (297)
T 1tx2_A 59 YNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV----KLPISIDTYKAEVAKQA--- 131 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS----CSCEEEECSCHHHHHHH---
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CceEEEeCCCHHHHHHH---
Confidence 356899999999999999998888765432111111 12 2344446665543 24677776665432221
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhhc-----------CC---C------CHHHHHHHHHHHHHhCCCCE---EEEE
Q 006836 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-----------RE---Y------TLSDFRTVVDTLIELVPGMQ---IATD 351 (629)
Q Consensus 295 l~~l~~~~~~~~~l~IGlESgsd~vLk~M~-----------R~---~------t~e~~~e~I~~lr~~~pgi~---i~td 351 (629)
.+. ...+.+.++- ...+++++..+. ++ | -.+.+.+.++.+.++ |+. +..|
T Consensus 132 -l~a--Ga~iINdvsg--~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~--GI~~~~IilD 204 (297)
T 1tx2_A 132 -IEA--GAHIINDIWG--AKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDA--GVRDENIILD 204 (297)
T ss_dssp -HHH--TCCEEEETTT--TSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHT--TCCGGGEEEE
T ss_pred -HHc--CCCEEEECCC--CCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHc--CCChhcEEEe
Confidence 111 1223333332 223556654421 11 1 035677788888888 876 8888
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Q 006836 352 IICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 352 ~IvGfPGETeedf~eTl~fl~~l 374 (629)
--+|| +-|.++-.++++.+.++
T Consensus 205 Pg~Gf-gk~~~~n~~ll~~l~~l 226 (297)
T 1tx2_A 205 PGIGF-AKTPEQNLEAMRNLEQL 226 (297)
T ss_dssp CCTTS-SCCHHHHHHHHHTGGGG
T ss_pred CCCCc-CCCHHHHHHHHHHHHHH
Confidence 88888 77777555555555544
No 44
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=52.47 E-value=12 Score=37.77 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=39.2
Q ss_pred CCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCCChhhhcccccEEEcC
Q 006836 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGV 152 (629)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~~~e~~~~~~d~VvG~ 152 (629)
.+||+++|+..|+.+.+-.. +++..+ ..+.+|+.|+-+...|++-....+.+-|.
T Consensus 185 ~~aD~viiTGsTlvN~Ti~~---lL~~~~-~a~~vvl~GPS~p~~P~lf~~Gv~~l~G~ 239 (270)
T 2h1q_A 185 PECDYVYITCASVVDKTLPR---LLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGF 239 (270)
T ss_dssp GGCSEEEEETHHHHHTCHHH---HHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEE
T ss_pred hcCCEEEEEeeeeecCCHHH---HHHhCc-cCCeEEEEecChhhhHHHHhcCcCEEEEe
Confidence 57999999888888776444 445443 44589999999999998655555654443
No 45
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=51.87 E-value=7.8 Score=39.18 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=37.4
Q ss_pred CCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCCChhhhcccccEEEc
Q 006836 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVG 151 (629)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~~~e~~~~~~d~VvG 151 (629)
.+||+++|+..|+.+.+-.+ +++.. +..+.||+.|+-++..|++-+...+.+-|
T Consensus 185 p~~D~viiTgstlvN~Tl~~---lL~~~-~~a~~vvl~GPStp~~P~lf~~Gv~~laG 238 (270)
T 3l5o_A 185 PECDYVYITCASVVDKTLPR---LLELS-RNARRITLVGPGTPLAPVLFEHGLQELSG 238 (270)
T ss_dssp GGCSEEEEETHHHHHTCHHH---HHHHT-TTSSEEEEESTTCCCCGGGGGTTCSEEEE
T ss_pred ccCCEEEEEeehhhcCCHHH---HHhhC-CCCCEEEEECCCchhhHHHHhcCcCEEEE
Confidence 57999999888888766444 34433 23456889999999999855555555444
No 46
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=51.08 E-value=1.7e+02 Score=31.60 Aligned_cols=135 Identities=8% Similarity=0.108 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCC-----CCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecC----------
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTG-----AYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN---------- 284 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~-----~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~---------- 284 (629)
..+.++.++-++.|.+.|+..|-..+.-.+ ... ..-.+.++.+.+.++ + ..+... ++
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~----~d~~e~l~~i~~~~~--~-~~l~~l-~R~~N~~G~~~~ 97 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLG----EDPWQRLRLLKQAMP--N-TPLQML-LRGQNLLGYRHY 97 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTC----CCHHHHHHHHHHHCS--S-SCEEEE-ECGGGTTSSSCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccC----CCHHHHHHHHHHhCC--C-CeEEEE-eccccccCcccc
Confidence 467888888889999999999988763210 012 233677888876554 2 222211 11
Q ss_pred CcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCHH
Q 006836 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDE 362 (629)
Q Consensus 285 p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~--IvGfPGETee 362 (629)
|+.+.+.. +......+ ...+++-. +.|+- +.+.+.++.+++. |..+..++ ..|.+ -+.+
T Consensus 98 ~ddv~~~~--v~~a~~~G--vd~i~if~-~~sd~-----------~ni~~~i~~ak~~--G~~v~~~i~~~~~~~-~~~e 158 (464)
T 2nx9_A 98 ADDVVDTF--VERAVKNG--MDVFRVFD-AMNDV-----------RNMQQALQAVKKM--GAHAQGTLCYTTSPV-HNLQ 158 (464)
T ss_dssp CHHHHHHH--HHHHHHTT--CCEEEECC-TTCCT-----------HHHHHHHHHHHHT--TCEEEEEEECCCCTT-CCHH
T ss_pred cchhhHHH--HHHHHhCC--cCEEEEEE-ecCHH-----------HHHHHHHHHHHHC--CCEEEEEEEeeeCCC-CCHH
Confidence 22222211 22333332 34455432 33332 4578899999999 98887777 44544 4789
Q ss_pred HHHHHHHHHHhcCCCeEEE
Q 006836 363 DFNQTVNLIKEYKFPQVHI 381 (629)
Q Consensus 363 df~eTl~fl~~l~~d~v~i 381 (629)
.+.+.++.+.+.+.+.+.+
T Consensus 159 ~~~~~a~~l~~~Gad~I~l 177 (464)
T 2nx9_A 159 TWVDVAQQLAELGVDSIAL 177 (464)
T ss_dssp HHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHCCCCEEEE
Confidence 9999999999999987665
No 47
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=50.48 E-value=2e+02 Score=30.07 Aligned_cols=139 Identities=8% Similarity=0.090 Sum_probs=82.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee-cCCcchhHHHHHHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFILEHLKEIAE 297 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~-~~p~~i~~~l~el~~ 297 (629)
.+.+.++.++-++.|.+.|+..|-... +... ....+.++.+.+... . ..+.. .++ . .+. +..
T Consensus 20 ~~~~~~~k~~ia~~L~~~Gv~~IE~g~---p~~~----~~~~~~~~~i~~~~~---~--~~v~~~~r~-~-~~d---i~~ 82 (382)
T 2ztj_A 20 ANFSTQDKVEIAKALDEFGIEYIEVTT---PVAS----PQSRKDAEVLASLGL---K--AKVVTHIQC-R-LDA---AKV 82 (382)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTSCC---S--SEEEEEEES-C-HHH---HHH
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEcC---CcCC----HHHHHHHHHHHhcCC---C--cEEEEEccc-C-hhh---HHH
Confidence 468899999999999999999998853 2221 123456666654321 1 22221 121 1 122 333
Q ss_pred HHhCCCcccccccccCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHhCCC--CEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELVPG--MQIATDIICGFPGETDEDFNQTVNLIKE 373 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~M~R~~--t~e~~~e~I~~lr~~~pg--i~i~td~IvGfPGETeedf~eTl~fl~~ 373 (629)
.+..+ ...+++-+ +.|+-..+.+++.. ..+.+.+.++.+++. | +.+..++.-++ .-+.+.+.+.++.+.+
T Consensus 83 a~~~g--~~~v~i~~-~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~--g~~~~v~~~~ed~~-~~~~~~~~~~~~~~~~ 156 (382)
T 2ztj_A 83 AVETG--VQGIDLLF-GTSKYLRAPHGRDIPRIIEEAKEVIAYIREA--APHVEVRFSAEDTF-RSEEQDLLAVYEAVAP 156 (382)
T ss_dssp HHHTT--CSEEEEEE-CC--------CCCHHHHHHHHHHHHHHHHHH--CTTSEEEEEETTTT-TSCHHHHHHHHHHHGG
T ss_pred HHHcC--CCEEEEEe-ccCHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCEEEEEEEEeCC-CCCHHHHHHHHHHHHH
Confidence 33332 45666655 56664444333321 235588899999999 8 88888887654 5567888888999999
Q ss_pred cCCCeEEE
Q 006836 374 YKFPQVHI 381 (629)
Q Consensus 374 l~~d~v~i 381 (629)
. .+.+.+
T Consensus 157 ~-a~~i~l 163 (382)
T 2ztj_A 157 Y-VDRVGL 163 (382)
T ss_dssp G-CSEEEE
T ss_pred h-cCEEEe
Confidence 9 876665
No 48
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=50.39 E-value=2e+02 Score=31.70 Aligned_cols=140 Identities=12% Similarity=0.094 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCCCCCCceEEEee--------c-CCcchh
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGM--------T-NPPFIL 289 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg-~d~~~~l~eLL~~L~~~i~~~~~~~iri~~--------~-~p~~i~ 289 (629)
..+.++.++-++.|.+.|++.|-..+.-.+... +-....-.+.++.+.+.++ + ..+.... . .|+.+.
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~--~-~~l~~L~R~~N~~G~~~ypddv~ 119 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMP--N-SRLQMLLRGQNLLGYRHYNDEVV 119 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCT--T-SCEEEEECGGGTTSSSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCC--C-CEEEEEeccccccCcccCccccc
Confidence 578899999999999999999988764220000 0001233677788776554 2 2222211 1 122222
Q ss_pred HHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCHHHHHHH
Q 006836 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDEDFNQT 367 (629)
Q Consensus 290 ~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~--IvGfPGETeedf~eT 367 (629)
+. .+......+ ...+++- -+.|+- +.+.+.++.+++. |..+.+.| ..|. .-+.+.+.+.
T Consensus 120 ~~--~ve~a~~aG--vd~vrIf-~s~sd~-----------~ni~~~i~~ak~~--G~~v~~~i~~~~~~-~~~~e~~~~~ 180 (539)
T 1rqb_A 120 DR--FVDKSAENG--MDVFRVF-DAMNDP-----------RNMAHAMAAVKKA--GKHAQGTICYTISP-VHTVEGYVKL 180 (539)
T ss_dssp HH--HHHHHHHTT--CCEEEEC-CTTCCT-----------HHHHHHHHHHHHT--TCEEEEEEECCCST-TCCHHHHHHH
T ss_pred HH--HHHHHHhCC--CCEEEEE-EehhHH-----------HHHHHHHHHHHHC--CCeEEEEEEeeeCC-CCCHHHHHHH
Confidence 21 133333332 3444442 233332 4567889999998 88776555 4454 4478888888
Q ss_pred HHHHHhcCCCeEEE
Q 006836 368 VNLIKEYKFPQVHI 381 (629)
Q Consensus 368 l~fl~~l~~d~v~i 381 (629)
++.+.+.+.+.+.+
T Consensus 181 a~~l~~~Gad~I~L 194 (539)
T 1rqb_A 181 AGQLLDMGADSIAL 194 (539)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEe
Confidence 99999999886655
No 49
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=48.16 E-value=1e+02 Score=30.96 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=74.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC---CcCCCH---HHHHHHHHHhCCCCCCceEEEeecCCcchhHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNL---PILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~---d~~~~l---~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l 292 (629)
+..+++.+++.++.+++.|+.-|-+-++.+. -|. +....+ ..+++.+.+. ...+.+.+.+|..+..
T Consensus 24 ~~~~~~~a~~~a~~~v~~GAdiIDIGgestr-pga~~v~~~eE~~Rv~pvi~~l~~~-----~~piSIDT~~~~va~a-- 95 (280)
T 1eye_A 24 CYLDLDDAVKHGLAMAAAGAGIVDVGGESSR-PGATRVDPAVETSRVIPVVKELAAQ-----GITVSIDTMRADVARA-- 95 (280)
T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEEECC---------------HHHHHHHHHHHHHT-----TCCEEEECSCHHHHHH--
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCccCC-CCCCCCCHHHHHHHHHHHHHHhhcC-----CCEEEEeCCCHHHHHH--
Confidence 3467999999999999999998888765422 121 111233 4444444431 2456776655532221
Q ss_pred HHHHHHHhC-CCcccccccccCCCCHHHHHh-------------------hcCC---C-C-----HHHHHHHHHHHHHhC
Q 006836 293 KEIAEVLRH-PCVYSFLHVPVQSGSDAVLSA-------------------MNRE---Y-T-----LSDFRTVVDTLIELV 343 (629)
Q Consensus 293 ~el~~l~~~-~~~~~~l~IGlESgsd~vLk~-------------------M~R~---~-t-----~e~~~e~I~~lr~~~ 343 (629)
.++. ..+.+.++- ...++++++. |... | + .+.+.+.++.+.++
T Consensus 96 -----Al~aGa~iINdvsg--~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~- 167 (280)
T 1eye_A 96 -----ALQNGAQMVNDVSG--GRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAA- 167 (280)
T ss_dssp -----HHHTTCCEEEETTT--TSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHT-
T ss_pred -----HHHcCCCEEEECCC--CCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHc-
Confidence 1111 112222221 1123344332 1111 1 1 56677888888888
Q ss_pred CCCE---EEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 344 PGMQ---IATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 344 pgi~---i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
|+. +..|=-+|| +.|.++-.++++.+.++
T Consensus 168 -Gi~~~~IilDPg~Gf-~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 168 -GVDPARLVLDPGLGF-AKTAQHNWAILHALPEL 199 (280)
T ss_dssp -TCCGGGEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred -CCChhhEEEECCCCc-ccCHHHHHHHHHHHHHh
Confidence 875 888888888 56766655666655554
No 50
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=45.52 E-value=63 Score=32.91 Aligned_cols=139 Identities=17% Similarity=0.222 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC---CcCCC---HHHHHHHHHHhCCCCCCceEEEeecCCcchhHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR---DIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~---d~~~~---l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l 292 (629)
+..+.+.+++.++.+++.|+.-|-+-++.+.. |. +.... +..+++.+.+ ....+.+.+.+|..+..-+
T Consensus 47 ~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-ga~~v~~~eE~~Rv~pvI~~l~~-----~~vpiSIDT~~~~Va~aAl 120 (294)
T 2dqw_A 47 RYLDPERALERAREMVAEGADILDLGAESTRP-GAAPVPVEEEKRRLLPVLEAVLS-----LGVPVSVDTRKPEVAEEAL 120 (294)
T ss_dssp ------CCHHHHHHHHHHTCSEEEEECC------------CCHHHHHHHHHHHHHT-----TCSCEEEECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHh-----CCCeEEEECCCHHHHHHHH
Confidence 34578999999999999999988887654321 21 11123 3444444432 1345777765554322111
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHHHHh----------hc-C-----------CCC------HHHHHHHHHHHHHhCC
Q 006836 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSA----------MN-R-----------EYT------LSDFRTVVDTLIELVP 344 (629)
Q Consensus 293 ~el~~l~~~~~~~~~l~IGlESgsd~vLk~----------M~-R-----------~~t------~e~~~e~I~~lr~~~p 344 (629)
+. ...+.+.++-+ .+++++.. |+ + .|. .+.+.+.++.+.++
T Consensus 121 ----~a--Ga~iINdVsg~---~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~-- 189 (294)
T 2dqw_A 121 ----KL--GAHLLNDVTGL---RDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSA-- 189 (294)
T ss_dssp ----HH--TCSEEECSSCS---CCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHT--
T ss_pred ----Hh--CCCEEEECCCC---CChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHC--
Confidence 00 11122222211 33333322 11 1 121 45677888888888
Q ss_pred CCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 006836 345 GMQ-IATDIICGFPGETDEDFNQTVNLIKEYK 375 (629)
Q Consensus 345 gi~-i~td~IvGfPGETeedf~eTl~fl~~l~ 375 (629)
|+. +..|=-+|| +.|.++-.++++.++++.
T Consensus 190 Gi~~IilDPG~Gf-~kt~~~n~~ll~~l~~~~ 220 (294)
T 2dqw_A 190 GVPQVVLDPGFGF-GKLLEHNLALLRRLDEIV 220 (294)
T ss_dssp TCSCEEEECCTTS-SCCHHHHHHHHHTHHHHH
T ss_pred CCCcEEEcCCCCc-ccCHHHHHHHHHHHHHHh
Confidence 774 555655677 788877767777666553
No 51
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=45.16 E-value=1.8e+02 Score=28.64 Aligned_cols=133 Identities=13% Similarity=0.162 Sum_probs=77.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCCc--EEEEeecCC---CCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVK--EVWLSSEDT---GAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~Gvk--eI~L~g~d~---~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l 292 (629)
.-+.+...+-++++.+.+.|++ ++-+.+..| .++| +.+++.|++..+. -...+.+...+|.. ..
T Consensus 34 ilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G-------~~~v~~lr~~~p~-~~ldvHLmv~~p~~---~i 102 (246)
T 3inp_A 34 ILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG-------PMVLKALRDYGIT-AGMDVHLMVKPVDA---LI 102 (246)
T ss_dssp GGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC-------HHHHHHHHHHTCC-SCEEEEEECSSCHH---HH
T ss_pred hhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcC-------HHHHHHHHHhCCC-CeEEEEEeeCCHHH---HH
Confidence 3456677788999999888887 455565543 2333 5788888775521 22345555456642 22
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 006836 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372 (629)
Q Consensus 293 ~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~ 372 (629)
+.+. + .+ ...+++..|+.. +..+.++.++++ |+.+...+- |+...+.++..++
T Consensus 103 ~~~~---~-aG-Ad~itvH~Ea~~--------------~~~~~i~~ir~~--G~k~Gvaln---p~Tp~e~l~~~l~--- 155 (246)
T 3inp_A 103 ESFA---K-AG-ATSIVFHPEASE--------------HIDRSLQLIKSF--GIQAGLALN---PATGIDCLKYVES--- 155 (246)
T ss_dssp HHHH---H-HT-CSEEEECGGGCS--------------CHHHHHHHHHTT--TSEEEEEEC---TTCCSGGGTTTGG---
T ss_pred HHHH---H-cC-CCEEEEccccch--------------hHHHHHHHHHHc--CCeEEEEec---CCCCHHHHHHHHh---
Confidence 2222 2 22 578888888763 245678888888 988766554 4433333332222
Q ss_pred hcCCCeEEEEeceeCCCCcc
Q 006836 373 EYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 373 ~l~~d~v~i~~ysP~PGTpa 392 (629)
.+|.+- ..+..||.--
T Consensus 156 --~vD~Vl--vMsV~PGfgG 171 (246)
T 3inp_A 156 --NIDRVL--IMSVNPGFGG 171 (246)
T ss_dssp --GCSEEE--EECSCTTC--
T ss_pred --cCCEEE--EeeecCCCCC
Confidence 356544 4466788743
No 52
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=43.85 E-value=77 Score=33.54 Aligned_cols=89 Identities=17% Similarity=0.287 Sum_probs=47.8
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEE---------------------
Q 006836 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII--------------------- 353 (629)
Q Consensus 295 l~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~I--------------------- 353 (629)
..+.+...+ +.+++.++++..+. +....+++.++++.+++. |+.+.+|+=
T Consensus 46 Yi~~a~~~G-f~~IFTSL~~~e~~------~~~~~~~~~~l~~~a~~~--g~~vi~DVsp~~~~~Lg~s~~dl~~f~~lG 116 (385)
T 1x7f_A 46 YISAAARHG-FSRIFTCLLSVNRP------KEEIVAEFKEIINHAKDN--NMEVILDVAPAVFDQLGISYSDLSFFAELG 116 (385)
T ss_dssp HHHHHHTTT-EEEEEEEECCC--------------HHHHHHHHHHHHT--TCEEEEEECTTCC------CCCTHHHHHHT
T ss_pred HHHHHHHCC-CCEEEccCCccCCC------hHHHHHHHHHHHHHHHHC--CCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 344444433 56666666655331 222345667777777777 777666641
Q ss_pred -------EcCCCCCHHHHHHH----------------HHHHHhcCCC---eEEEEeceeCCCCcc
Q 006836 354 -------CGFPGETDEDFNQT----------------VNLIKEYKFP---QVHISQFYPRPGTPA 392 (629)
Q Consensus 354 -------vGfPGETeedf~eT----------------l~fl~~l~~d---~v~i~~ysP~PGTpa 392 (629)
.||.++....+... ++-+.+.+++ ....+.|+|+|.|-+
T Consensus 117 i~gLRLD~Gf~~~eia~ls~n~~glkIeLNASt~~~~l~~l~~~~~n~~~l~acHNFYPr~~TGL 181 (385)
T 1x7f_A 117 ADGIRLDVGFDGLTEAKMTNNPYGLKIELNVSNDIAYLENILSHQANKSALIGCHNFYPQKFTGL 181 (385)
T ss_dssp CSEEEESSCCSSHHHHHHTTCTTCCEEEEETTSCSSHHHHHTTSSCCGGGEEEECCCBCSTTCSB
T ss_pred CCEEEEcCCCCHHHHHHHhcCCCCCEEEEeCcCCHHHHHHHHHcCCChHHeEEeeccCCCCCCCC
Confidence 24444444433222 4444555554 457789999999964
No 53
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=43.76 E-value=1.4e+02 Score=31.50 Aligned_cols=100 Identities=10% Similarity=0.072 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~---~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
.+++++.++++.+++.|++.|.+.|.+-..+ .+.. ..-.+.++++++.++ ....+++. .|-..-.+...++.+
T Consensus 124 ~~~e~~~~~a~~~~~~G~~~iKl~G~~~~~~-~~~~~~~~~d~e~v~avR~avG--~d~~L~vD-aN~~~~~~~A~~~~~ 199 (405)
T 3rr1_A 124 DRPADVIAGMKALQAGGFDHFKLNGCEEMGI-IDTSRAVDAAVARVAEIRSAFG--NTVEFGLD-FHGRVSAPMAKVLIK 199 (405)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEESCCSSSC-BCSHHHHHHHHHHHHHHHHTTG--GGSEEEEE-CCSCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcccc-cccchhHHHHHHHHHHHHHHhC--CCceEEEE-CCCCCCHHHHHHHHH
Confidence 4689999999999999999999865321110 0000 112567778877664 34567766 343322233233444
Q ss_pred HHhCCCcccccccccCCCCHHHHHhhcC
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNR 325 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~M~R 325 (629)
.+...+ ..++.=|+-..+-+.++.+++
T Consensus 200 ~L~~~~-i~~iEeP~~~~d~~~~~~l~~ 226 (405)
T 3rr1_A 200 ELEPYR-PLFIEEPVLAEQAETYARLAA 226 (405)
T ss_dssp HHGGGC-CSCEECSSCCSSTHHHHHHHT
T ss_pred HHHhcC-CCEEECCCCcccHHHHHHHHh
Confidence 444333 456666665555555555544
No 54
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=42.66 E-value=17 Score=36.25 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=42.9
Q ss_pred CCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCCChhh-hcccccEEEcC--CCHHHHHHHHH
Q 006836 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL-KELEGVSIVGV--QQIDRVVEVVE 163 (629)
Q Consensus 95 ~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~~~e~-~~~~~d~VvG~--~e~~~l~ell~ 163 (629)
+||+++|+..|+.+.+-. .+++..+ ....+|+.|+-++..|++ .....+.+-|. .+.+.+.+.|.
T Consensus 164 ~~D~v~iTGsTlvN~Ti~---~lL~~~~-~~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d~~~~l~~i~ 231 (249)
T 3npg_A 164 EVDGIIASASCIVNGTLD---MILDRAK-KAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKALVKLK 231 (249)
T ss_dssp GCSEEEEETTHHHHTCHH---HHHHHCS-SCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCHHHHHHHHH
T ss_pred cCCEEEEEeeeeccCCHH---HHHHhCc-ccCeEEEEecCchhhHHHHhhCCccEEEEEEecCHHHHHHHHH
Confidence 699999988888877644 3444443 344689999999999985 45656654443 34444555553
No 55
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=42.50 E-value=1.1e+02 Score=31.21 Aligned_cols=124 Identities=11% Similarity=0.123 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCC----cc--hhHHHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP----PF--ILEHLK 293 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p----~~--i~~~l~ 293 (629)
.++.+++.+.+..+.+.|++.|..+..|....+......-.+|++.|.+. +...+.+. .+| .. ....++
T Consensus 93 ~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~----~~f~IgvA-~yPE~Hp~a~~~~~d~~ 167 (304)
T 3fst_A 93 DATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV----ADFDISVA-AYPEVHPEAKSAQADLL 167 (304)
T ss_dssp TSCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHH----CCCEEEEE-ECTTCCTTCSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEE-eCCCcCCCCCCHHHHHH
Confidence 46889999999999999999998886665544321124557888877654 23344443 233 21 111222
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHH
Q 006836 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQT 367 (629)
Q Consensus 294 el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf-PGETeedf~eT 367 (629)
.|.+-...+ ..++- | .=-|+.+.|.+.++.+++. |+.+ -||.|+ |=-+...+...
T Consensus 168 ~Lk~KvdAG--Adf~i----T---------Q~ffD~~~~~~f~~~~r~~--Gi~v--PIi~GImPi~s~~~~~~~ 223 (304)
T 3fst_A 168 NLKRKVDAG--ANRAI----T---------QFFFDVESYLRFRDRCVSA--GIDV--EIIPGILPVSNFKQAKKL 223 (304)
T ss_dssp HHHHHHHHT--CCEEE----E---------CCCSCHHHHHHHHHHHHHT--TCCS--CEECEECCCSCHHHHHHH
T ss_pred HHHHHHHcC--CCEEE----e---------CccCCHHHHHHHHHHHHhc--CCCC--cEEEEecccCCHHHHHHH
Confidence 222111111 12210 0 1236788899999999998 7643 466665 44555555444
No 56
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=42.49 E-value=1.1e+02 Score=30.40 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCc
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~ 286 (629)
+..+++.+++.++.+++.|..-|-+-+. +-..+....+.+++..+.+. ....+.+.+.+|.
T Consensus 20 ~~~~~~~a~~~a~~~v~~GAdiIDIg~g---~~~v~~~ee~~rvv~~i~~~----~~~pisIDT~~~~ 80 (262)
T 1f6y_A 20 QERDPAPVQEWARRQEEGGARALDLNVG---PAVQDKVSAMEWLVEVTQEV----SNLTLCLDSTNIK 80 (262)
T ss_dssp HHTCHHHHHHHHHHHHHHTCSEEEEBCC-------CHHHHHHHHHHHHHTT----CCSEEEEECSCHH
T ss_pred hcCCHHHHHHHHHHHHHCCCcEEEECCC---CCCCChHHHHHHHHHHHHHh----CCCeEEEeCCCHH
Confidence 4567999999999999999987776541 11111123455555555432 2356777765554
No 57
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=40.74 E-value=1e+02 Score=30.69 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=14.0
Q ss_pred HhhcCCCCHHHHHHHHHHHHHh
Q 006836 321 SAMNREYTLSDFRTVVDTLIEL 342 (629)
Q Consensus 321 k~M~R~~t~e~~~e~I~~lr~~ 342 (629)
+.+..|.+.+++.+.++.+|+.
T Consensus 71 ~AL~~G~~~~~~~~~v~~ir~~ 92 (267)
T 3vnd_A 71 RSLAAGTTSSDCFDIITKVRAQ 92 (267)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhc
Confidence 3344566777777777777765
No 58
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=40.49 E-value=1.1e+02 Score=25.19 Aligned_cols=96 Identities=7% Similarity=0.047 Sum_probs=55.4
Q ss_pred ChhhHHHHHHHHHhcCceee---CCC---------CCCCEEEEeecccccchHHHHHHHHHHHhhCC--CCEE-EECccc
Q 006836 71 NQSDSEYMAGQLSAFGYALT---DNS---------EEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLV-VAGCVP 135 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~~~---~~~---------~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VV-VgGc~a 135 (629)
|....+.+...|.+.||.++ .+. ..+|+++++... .... ..+.++++++.+ .+|| +++-..
T Consensus 10 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l-~~~~---g~~~~~~l~~~~~~~~ii~~s~~~~ 85 (134)
T 3f6c_A 10 HPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI-PGVN---GIQVLETLRKRQYSGIIIIVSAKND 85 (134)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC-SSSC---HHHHHHHHHHTTCCSEEEEEECC--
T ss_pred CHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC-CCCC---hHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 45567788899999998875 222 357999996432 2212 344556665543 3444 555432
Q ss_pred CCCh-hhhccccc-EEEcCCCHHHHHHHHHHHhcCCc
Q 006836 136 QGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGHE 170 (629)
Q Consensus 136 ~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~g~~ 170 (629)
.... +......+ ++.-+-....+.+.++....+..
T Consensus 86 ~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 86 HFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp -CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 2222 22234444 46666666788888888776643
No 59
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=40.43 E-value=1.5e+02 Score=30.07 Aligned_cols=141 Identities=17% Similarity=0.216 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC-c--CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-I--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d-~--~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~ 296 (629)
..+++.+++.++.+++.|+.-|-+-++.+.. |.+ . ...+.+++..+..... ....+.+.+.+|..+..-+
T Consensus 42 ~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrP-ga~~v~~~eE~~Rv~pvi~~l~~--~~vpiSIDT~~~~Va~aAl---- 114 (294)
T 2y5s_A 42 FLARDDALRRAERMIAEGADLLDIGGESTRP-GAPPVPLDEELARVIPLVEALRP--LNVPLSIDTYKPAVMRAAL---- 114 (294)
T ss_dssp --CTTHHHHHHHHHHHTTCSEEEEESSCCST-TCCCCCHHHHHHHHHHHHHHHGG--GCSCEEEECCCHHHHHHHH----
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHhh--CCCeEEEECCCHHHHHHHH----
Confidence 4578999999999999999988887654322 211 1 1223333333332111 1346777766664322211
Q ss_pred HHHhCCCcccccccccCCCCHHHHHhhcC----------------------CCC------HHHHHHHHHHHHHhCCCCE-
Q 006836 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNR----------------------EYT------LSDFRTVVDTLIELVPGMQ- 347 (629)
Q Consensus 297 ~l~~~~~~~~~l~IGlESgsd~vLk~M~R----------------------~~t------~e~~~e~I~~lr~~~pgi~- 347 (629)
+. ...+.+.++-+ . +++++..+.+ .|. .+.+.+.++.+.++ |+.
T Consensus 115 ~a--Ga~iINdVsg~--~-d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~--Gi~~ 187 (294)
T 2y5s_A 115 AA--GADLINDIWGF--R-QPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDA--GVAA 187 (294)
T ss_dssp HH--TCSEEEETTTT--C-STTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHT--TCCG
T ss_pred Hc--CCCEEEECCCC--C-chHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHc--CCCh
Confidence 11 11122222211 1 3334333211 011 45677888888888 876
Q ss_pred --EEEEEEEcCCCCCH-HHHHHHHHHHHhcC
Q 006836 348 --IATDIICGFPGETD-EDFNQTVNLIKEYK 375 (629)
Q Consensus 348 --i~td~IvGfPGETe-edf~eTl~fl~~l~ 375 (629)
+..|--+|| +.|. ++-.++++-+.+++
T Consensus 188 ~~IilDPG~Gf-~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 188 ERICVDPGFGF-GKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp GGEEEECCTTS-SSCTTHHHHHHHHTGGGGS
T ss_pred hhEEEeCCCcc-cccchHHHHHHHHHHHHHH
Confidence 888888888 6666 55555665555554
No 60
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=40.16 E-value=7.1 Score=37.13 Aligned_cols=72 Identities=18% Similarity=0.364 Sum_probs=29.7
Q ss_pred eEEEEecCcccChhhHHHHHH-----HHHhcCc-eeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEE
Q 006836 60 TIYMKTFGCSHNQSDSEYMAG-----QLSAFGY-ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVA 131 (629)
Q Consensus 60 ~v~i~TlGC~~N~~dse~m~~-----~L~~~G~-~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVg 131 (629)
.+++.++||. --+.|.|+. .|...|. ..+..+.+||+.+| +=+++......+ +.+.+.. ++++ |.+|
T Consensus 35 slW~~~~gc~--cC~iEll~~~~p~yDl~rfGi~~~~aSPrqaDiliV-eG~Vt~~m~~~l-~~~~e~~-p~pk~VIAvG 109 (181)
T 3i9v_6 35 SLWPATFGLA--CCAIEMMASTDARNDLARFGSEVFRASPRQADVMIV-AGRLSKKMAPVM-RRVWEQM-PDPKWVISMG 109 (181)
T ss_dssp SCCCEEEECS--THHHHHTTTTTTC----------------CCCCEEE-ESCCBTTTHHHH-HHHHHSS-CSSCCEEEEH
T ss_pred CcccccCCCC--chHHHHHHhhhchhhHHHcCcccccCCCCCceEEEE-eccCCcccHHHH-HHHHHHc-CCCceEEEee
Confidence 4566666663 223332221 1444555 44556789999999 567776543332 2222222 2333 4466
Q ss_pred CcccC
Q 006836 132 GCVPQ 136 (629)
Q Consensus 132 Gc~a~ 136 (629)
-|...
T Consensus 110 sCA~~ 114 (181)
T 3i9v_6 110 ACASS 114 (181)
T ss_dssp HHHHS
T ss_pred ccccc
Confidence 66443
No 61
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=40.09 E-value=86 Score=32.26 Aligned_cols=139 Identities=11% Similarity=0.145 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--C---CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~--~---~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~e 294 (629)
..+.+.+++.++.+++.|..-|-+-++.+- -|... . .++..+++.|.+..+ ...+.+.+.+|..+..-+
T Consensus 61 ~~~~~~a~~~A~~~v~~GAdIIDIGgeSTr-PG~~v~~~eEl~Rv~pvI~~l~~~~~---~vpISIDT~~~~VaeaAl-- 134 (318)
T 2vp8_A 61 TFSDAAARDAVHRAVADGADVIDVGGVKAG-PGERVDVDTEITRLVPFIEWLRGAYP---DQLISVDTWRAQVAKAAC-- 134 (318)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEC-----------CHHHHHHHHHHHHHHHHHHST---TCEEEEECSCHHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCCCHHHHHHHHHHHHHHHHhhCC---CCeEEEeCCCHHHHHHHH--
Confidence 356899999999999999998888765332 22111 1 134445666665432 356778766654322211
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHh--------------------hcCC--CC----------HHHHHHHHHHHHHh
Q 006836 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSA--------------------MNRE--YT----------LSDFRTVVDTLIEL 342 (629)
Q Consensus 295 l~~l~~~~~~~~~l~IGlESgsd~vLk~--------------------M~R~--~t----------~e~~~e~I~~lr~~ 342 (629)
+. ...+.+.++-+ + +++++.. |.+. |. .+.+.+.++.+.++
T Consensus 135 --~a--Ga~iINDVsg~-~--d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~a 207 (318)
T 2vp8_A 135 --AA--GADLINDTWGG-V--DPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAA 207 (318)
T ss_dssp --HH--TCCEEEETTSS-S--STTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --Hh--CCCEEEECCCC-C--chHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHc
Confidence 10 11122222221 1 2333322 1111 10 24566778888888
Q ss_pred CCCCE---EEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 006836 343 VPGMQ---IATDIICGFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 343 ~pgi~---i~td~IvGfPGETeedf~eTl~fl~~l 374 (629)
|+. |..|=-+|| +.|.++-.++++.+.++
T Consensus 208 --GI~~~~IilDPG~GF-~Kt~~~nl~ll~~l~~l 239 (318)
T 2vp8_A 208 --GVAREKVLIDPAHDF-GKNTFHGLLLLRHVADL 239 (318)
T ss_dssp --TCCGGGEEEETTTTC-CTTSHHHHHHHHTHHHH
T ss_pred --CCChhhEEEcCCCCc-ccCHHHHHHHHHHHHHH
Confidence 884 888888898 55665555566555544
No 62
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=39.55 E-value=3.3e+02 Score=27.85 Aligned_cols=138 Identities=14% Similarity=0.198 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC----c---C---CCHHHHHHHHHHhCCCCCCceEEEeecCCcch
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD----I---G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d----~---~---~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i 288 (629)
+..+++.+++.++.+++.|+.-|-+-++.+.. |.+ . . .++..+++.|.+.. ...+.+.+.+|..+
T Consensus 44 ~~~~~~~al~~A~~~v~~GAdIIDIGgeSTrP-ga~~~~~~V~~~eE~~Rv~pvI~~l~~~~----~vpISIDT~~~~Va 118 (314)
T 3tr9_A 44 PHLDLNSALRTAEKMVDEGADILDIGGEATNP-FVDIKTDSPSTQIELDRLLPVIDAIKKRF----PQLISVDTSRPRVM 118 (314)
T ss_dssp BCCSHHHHHHHHHHHHHTTCSEEEEECCCSCT-TC-----CHHHHHHHHHHHHHHHHHHHHC----CSEEEEECSCHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-CcccccCCCCHHHHHHHHHHHHHHHHhhC----CCeEEEeCCCHHHH
Confidence 56789999999999999999988877653322 222 0 0 12455566665542 35678887666433
Q ss_pred hHHHHHHHHHHhCCCcccccccccCCCCHHHHHhh----------c-CCC--C-------------HHHHHHHHHHHHHh
Q 006836 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM----------N-REY--T-------------LSDFRTVVDTLIEL 342 (629)
Q Consensus 289 ~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M----------~-R~~--t-------------~e~~~e~I~~lr~~ 342 (629)
..-+ + ....+.+.++-+ + .++++..+ . ++. + .+.+.+.++.+.++
T Consensus 119 ~aAl----~--aGa~iINDVsg~-~--~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~ 189 (314)
T 3tr9_A 119 REAV----N--TGADMINDQRAL-Q--LDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKA 189 (314)
T ss_dssp HHHH----H--HTCCEEEETTTT-C--STTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH----H--cCCCEEEECCCC-C--chHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHc
Confidence 2211 1 112233333321 1 33444332 1 111 1 45677788888888
Q ss_pred CCCCE---EEEEEEEc---CCCCCHHHHHHHHHHHHh
Q 006836 343 VPGMQ---IATDIICG---FPGETDEDFNQTVNLIKE 373 (629)
Q Consensus 343 ~pgi~---i~td~IvG---fPGETeedf~eTl~fl~~ 373 (629)
|+. +..|=-+| | |.|.++-.++++.+.+
T Consensus 190 --GI~~~~IilDPG~G~~~F-~Kt~~~n~~lL~~l~~ 223 (314)
T 3tr9_A 190 --GISEDRIIIDPGFGQGNY-GKNVSENFYLLNKLPE 223 (314)
T ss_dssp --TCCGGGEEEECCCCSGGG-CCCHHHHHHHHHTTHH
T ss_pred --CCCHhHEEEeCCCCchhh-cCCHHHHHHHHHHHHH
Confidence 884 77777778 7 6776654444444433
No 63
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=39.10 E-value=1.3e+02 Score=25.15 Aligned_cols=102 Identities=13% Similarity=0.177 Sum_probs=58.2
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhC--
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-- 124 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~-- 124 (629)
+.+|.|+. -|....+.+...|+..||++... ...+|+++++. .-. ....+.++++++.
T Consensus 4 ~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~--~~~---~~g~~~~~~l~~~~~ 74 (142)
T 2qxy_A 4 TPTVMVVD----ESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV--FEG---EESLNLIRRIREEFP 74 (142)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC--TTT---HHHHHHHHHHHHHCT
T ss_pred CCeEEEEe----CCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC--CCC---CcHHHHHHHHHHHCC
Confidence 34555543 34566778888888889886532 34689999975 221 1234555655543
Q ss_pred CCCEE-EECcccCCCh--hhhcccc-cEEEcCCCHHHHHHHHHHHhcCC
Q 006836 125 KKPLV-VAGCVPQGSR--DLKELEG-VSIVGVQQIDRVVEVVEETLKGH 169 (629)
Q Consensus 125 ~~~VV-VgGc~a~~~~--e~~~~~~-d~VvG~~e~~~l~ell~~~~~g~ 169 (629)
+.+|| +++-. .... ....... +++.-.-....+.+.+.....+.
T Consensus 75 ~~pii~ls~~~-~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 75 DTKVAVLSAYV-DKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp TCEEEEEESCC-CHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCCEEEEECCC-CHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 34554 44432 2111 1122333 45666667778888888776553
No 64
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=37.52 E-value=1.7e+02 Score=30.82 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=17.3
Q ss_pred HHHHHhcCCC---eEEEEeceeCCCCcc
Q 006836 368 VNLIKEYKFP---QVHISQFYPRPGTPA 392 (629)
Q Consensus 368 l~fl~~l~~d---~v~i~~ysP~PGTpa 392 (629)
++-+.+.+++ ....+.|+|+|.|-+
T Consensus 128 l~~l~~~~~n~~~l~a~HNFYPr~~TGL 155 (372)
T 2p0o_A 128 VAELKAHQADFSRLEAWHNYYPRPETGI 155 (372)
T ss_dssp HHHHHHTTCCGGGEEEECCCCCSTTCSB
T ss_pred HHHHHHcCCChHHeEEeeccCCCCCCCC
Confidence 3444555554 557799999999965
No 65
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=37.13 E-value=1.6e+02 Score=28.16 Aligned_cols=66 Identities=9% Similarity=0.029 Sum_probs=45.2
Q ss_pred ccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 006836 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (629)
Q Consensus 305 ~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~ 382 (629)
+..+.+.... +.-..+.++..+..+.++++ |+.+.+.-.. + .++.+.+++.++++.+++...+.+.
T Consensus 44 ~~~vEl~~~~--------~~~~~~~~~~~~~~~~l~~~--gl~i~~~~~~-~-~~~~~~~~~~i~~A~~lGa~~v~~~ 109 (257)
T 3lmz_A 44 IHYLCIKDFH--------LPLNSTDEQIRAFHDKCAAH--KVTGYAVGPI-Y-MKSEEEIDRAFDYAKRVGVKLIVGV 109 (257)
T ss_dssp CCEEEECTTT--------SCTTCCHHHHHHHHHHHHHT--TCEEEEEEEE-E-ECSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCEEEEeccc--------CCCCCCHHHHHHHHHHHHHc--CCeEEEEecc-c-cCCHHHHHHHHHHHHHhCCCEEEec
Confidence 5666665542 11234667777788888888 8876543222 1 2788999999999999998888764
No 66
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=36.71 E-value=1.7e+02 Score=23.83 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=53.7
Q ss_pred ChhhHHHHHHHHHhcCceeeCC-----------CC-CCCEEEEeecccccchHHHHHHHHHHHhhC--CCCEE-EECccc
Q 006836 71 NQSDSEYMAGQLSAFGYALTDN-----------SE-EADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCVP 135 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~~~~~-----------~~-~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VV-VgGc~a 135 (629)
|....+.+...|...||++... .. .+|+++++.-.-.... ..+.++++++. +.+|| +++..
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~---g~~~~~~l~~~~~~~~ii~~s~~~- 89 (132)
T 2rdm_A 14 EAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPD---GWQVARVAREIDPNMPIVYISGHA- 89 (132)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSC---HHHHHHHHHHHCTTCCEEEEESSC-
T ss_pred cHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCC---HHHHHHHHHhcCCCCCEEEEeCCc-
Confidence 4556678888888889876432 23 6899999643221012 23444545433 44555 45433
Q ss_pred CCChhhhccc-ccEEEcCCCHHHHHHHHHHHhcCC
Q 006836 136 QGSRDLKELE-GVSIVGVQQIDRVVEVVEETLKGH 169 (629)
Q Consensus 136 ~~~~e~~~~~-~d~VvG~~e~~~l~ell~~~~~g~ 169 (629)
........+. ++++.-+-....+...++....+.
T Consensus 90 ~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 90 ALEWASNGVPDSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp CTTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcC
Confidence 2221122222 346667767778888888776654
No 67
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=36.15 E-value=1.1e+02 Score=25.07 Aligned_cols=103 Identities=10% Similarity=0.059 Sum_probs=58.3
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC--
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-- 125 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~-- 125 (629)
++|.|+. -|....+.+...|.+.||.+... ...+|+++++...-. .. ..++++++++..
T Consensus 7 ~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~-~~---g~~~~~~l~~~~~~ 78 (132)
T 3lte_A 7 KRILVVD----DDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPK-LD---GLDVIRSLRQNKVA 78 (132)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTT-BC---HHHHHHHHHTTTCS
T ss_pred ccEEEEE----CCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCC-CC---HHHHHHHHHhcCcc
Confidence 4555543 35666778888899899876432 346899999653322 11 245566665532
Q ss_pred --CCEEEECcccCCCh-hhhccccc-EEEcCCCHHHHHHHHHHHhcCC
Q 006836 126 --KPLVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (629)
Q Consensus 126 --~~VVVgGc~a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~g~ 169 (629)
++|++..-...... +.....++ ++.-+-....+.+.|.....+.
T Consensus 79 ~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 79 NQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp SCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred CCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 45666543322211 12233444 4556667778888887766553
No 68
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=36.15 E-value=1.2e+02 Score=24.94 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=55.1
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC--
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-- 125 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~-- 125 (629)
++|.|+. -+....+.+...|...||.+... ...+|+++++...- .....+.++++++.+
T Consensus 8 ~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~----~~~g~~~~~~l~~~~~~ 79 (130)
T 3eod_A 8 KQILIVE----DEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP----RMNGLKLLEHIRNRGDQ 79 (130)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC---------CHHHHHHHHHTTCC
T ss_pred CeEEEEe----CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC----CCCHHHHHHHHHhcCCC
Confidence 4565553 34666788889999999886432 34689999964321 122345556665543
Q ss_pred CCE-EEECcccCCCh-hhhccccc-EEEcCC-CHHHHHHHHHHHhcCC
Q 006836 126 KPL-VVAGCVPQGSR-DLKELEGV-SIVGVQ-QIDRVVEVVEETLKGH 169 (629)
Q Consensus 126 ~~V-VVgGc~a~~~~-e~~~~~~d-~VvG~~-e~~~l~ell~~~~~g~ 169 (629)
.+| ++++....... +......+ ++.-+- ..+.+.+.++....+.
T Consensus 80 ~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 80 TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp CCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 454 45554321111 12233444 455554 5567888887766553
No 69
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=35.70 E-value=1.9e+02 Score=24.03 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=60.7
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHh-cCceeeCC-----------C-CCCCEEEEeecccccchHHHHHHHHHHHhh-
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDN-----------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKS- 123 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~-~G~~~~~~-----------~-~~ADlviINTCtv~~~ae~~~~~~ir~~k~- 123 (629)
+.+|.|+. -|....+.+...|+. .||+++.. . ..+|+|+++.-. +......++++++++
T Consensus 4 ~~~ilivd----d~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l---~~~~~g~~~~~~l~~~ 76 (140)
T 3lua_A 4 DGTVLLID----YFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAF---PVEKEGLEVLSAIRNN 76 (140)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCS---SSHHHHHHHHHHHHHS
T ss_pred CCeEEEEe----CCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCC---CCCCcHHHHHHHHHhC
Confidence 44555542 345667788888988 89987532 3 678999996422 202334566666665
Q ss_pred ---CCCCEE-EECcccCCCh-hhhccccc-EEEcCCCHHHHHHHHHHHhcCC
Q 006836 124 ---AKKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (629)
Q Consensus 124 ---~~~~VV-VgGc~a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~g~ 169 (629)
.+.+|| +++....... +.....++ ++.-.-....+.+.++....+.
T Consensus 77 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 77 SRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp GGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 244554 5554321111 12233444 4666666678888888877664
No 70
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=34.48 E-value=1.4e+02 Score=29.51 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=78.9
Q ss_pred ceEEEeecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHH--H--HhhcCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 006836 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV--L--SAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (629)
Q Consensus 276 ~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~v--L--k~M~R~~t~e~~~e~I~~lr~~~pgi~i~td 351 (629)
..+.+. +-|.. ....++.+.++..+.-..||+|+|..+..- + ..+.-+.+.+++.+.++++.+.+|+..-..+
T Consensus 28 ~pvT~A-i~P~~--p~~~~~a~~A~~~G~EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~GvnN 104 (245)
T 2nly_A 28 IPVTVA-VMPFL--EHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNN 104 (245)
T ss_dssp SCEEEE-ECSSS--TTHHHHHHHHHHTTCEEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred CCeEEE-ECCCC--CCHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCCcEEEec
Confidence 456665 33431 222334455555554468999999987321 1 1122356899999999999999999654444
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEec-ee---------CCCCccccCC------CCCHHHHHHHHHHHHHHHH
Q 006836 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQF-YP---------RPGTPAARMK------KVPSAVVKKRSRELTSVFE 415 (629)
Q Consensus 352 ~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~y-sP---------~PGTpa~~~~------~v~~~~~~~R~~~L~~l~~ 415 (629)
-|=.-=.++++-++..++.+++.++- ++-.- ++ .-|-|...-. ..+...+++.++++..+++
T Consensus 105 HmGS~~T~~~~~m~~vm~~l~~~gL~--fvDS~Ts~~S~a~~~A~~~gvp~~~rdvFLD~~~~~~~~I~~ql~~a~~~A~ 182 (245)
T 2nly_A 105 HMGSKIVENEKIMRAILEVVKEKNAF--IIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAKKAK 182 (245)
T ss_dssp EECTTGGGCHHHHHHHHHHHHHTTCE--EEECCCCSSCSHHHHHHHTTCCEEECCEESCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhcCHHHHHHHHHHHHHCCCE--EEcCCCCcccHHHHHHHHcCCCeEEeeEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 44333356788899999999998852 22111 11 2344444321 2345666666666666655
No 71
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=34.28 E-value=1.8e+02 Score=24.69 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=59.4
Q ss_pred CCCCCCceEEEEecCcccChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHH
Q 006836 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKC 121 (629)
Q Consensus 53 ~~~~~~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~ 121 (629)
+.+..+.+|.|+. -|....+.+...|...||.+... ...+|+|+++...- ... ..++++++
T Consensus 9 ~~~~~~~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~-~~~---g~~~~~~l 80 (153)
T 3hv2_A 9 ATVTRRPEILLVD----SQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLP-QMD---GPTLLARI 80 (153)
T ss_dssp CCCCSCCEEEEEC----SCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCS-SSC---HHHHHHHH
T ss_pred hhccCCceEEEEC----CCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCC-cCc---HHHHHHHH
Confidence 3345566777764 34566778888898899886532 34689999965432 212 23444545
Q ss_pred hhC--CCCEE-EECcccCCCh--hhhccc-cc-EEEcCCCHHHHHHHHHHHhc
Q 006836 122 KSA--KKPLV-VAGCVPQGSR--DLKELE-GV-SIVGVQQIDRVVEVVEETLK 167 (629)
Q Consensus 122 k~~--~~~VV-VgGc~a~~~~--e~~~~~-~d-~VvG~~e~~~l~ell~~~~~ 167 (629)
++. +.+|| +++. ..... +..... ++ ++.-+-....+...|+....
T Consensus 81 ~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 81 HQQYPSTTRILLTGD-PDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp HHHCTTSEEEEECCC-CCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred HhHCCCCeEEEEECC-CCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 443 34555 4442 22111 122334 44 45566666777777766543
No 72
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=34.20 E-value=2.1e+02 Score=29.98 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC--C-------------c-----CCCHHHHHHHHHHhCCCCCCceEEE
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--D-------------I-----GVNLPILLNAIVAELPPDGSTMLRI 280 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~--d-------------~-----~~~l~eLL~~L~~~i~~~~~~~iri 280 (629)
.+++++.++++.+++.|++.+.+=- +.++. + . .....+.++++++.++ ....+++
T Consensus 132 ~~~e~~~~~a~~~~~~G~~~~K~Kv---G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G--~d~~l~v 206 (401)
T 3sbf_A 132 DTMEGIYDLVEGFLEKGYKHIRCQL---GFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYG--NQFHILH 206 (401)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEE---SCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHT--TSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEee---ccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcC--CCCEEEE
Confidence 4689999999999999999888631 11110 0 0 0122566778877765 4567777
Q ss_pred eecCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcC
Q 006836 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325 (629)
Q Consensus 281 ~~~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R 325 (629)
. .|-..-.+...++.+.+...+ ..++.=|+...+.+.++.+++
T Consensus 207 D-an~~~~~~~A~~~~~~L~~~~-i~~iEqP~~~~~~~~~~~l~~ 249 (401)
T 3sbf_A 207 D-VHERLFPNQAIQFAKEVEQYK-PYFIEDILPPNQTEWLDNIRS 249 (401)
T ss_dssp E-CTTCSCHHHHHHHHHHHGGGC-CSCEECSSCTTCGGGHHHHHT
T ss_pred E-CCCCCCHHHHHHHHHHHHhcC-CCEEECCCChhHHHHHHHHHh
Confidence 6 333222232233444444333 456776665555555555544
No 73
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=33.37 E-value=1.3e+02 Score=25.01 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=59.4
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC-
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK- 125 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~- 125 (629)
+.+|.|+. -+....+.+...|+..||++... ...+|+|+++.-. -.. .....++++++++.+
T Consensus 6 ~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~-~~~g~~~~~~l~~~~~ 79 (136)
T 3kto_A 6 HPIIYLVD----HQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHL-EDK-KDSGIELLETLVKRGF 79 (136)
T ss_dssp -CEEEEEC----SCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTG-GGB-TTHHHHHHHHHHHTTC
T ss_pred CCeEEEEc----CCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcC-CCC-CccHHHHHHHHHhCCC
Confidence 34565553 34566778888898899987531 3468999996422 110 023355666666553
Q ss_pred -CCE-EEECcccCCCh-hhhccccc-EEEcCCCHHHHHHHHHHHhcC
Q 006836 126 -KPL-VVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (629)
Q Consensus 126 -~~V-VVgGc~a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~g 168 (629)
.+| ++++....... +.....++ ++.-+-....+.+.++....+
T Consensus 80 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 80 HLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 454 45554322111 12233444 566676777888888776554
No 74
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=33.25 E-value=1.7e+02 Score=24.23 Aligned_cols=105 Identities=14% Similarity=0.180 Sum_probs=60.2
Q ss_pred CCceEEEEecCcccChhhHHHHHHHHHhcCceeeCC------------CCCCCEEEEeecccccchHHHHHHHHHHHhhC
Q 006836 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (629)
Q Consensus 57 ~~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~ 124 (629)
.+.+|.|+. -|....+.+...|++.||++... ...+|+|+++.-. -.. ...++++++++.
T Consensus 6 ~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l-~~~---~g~~~~~~l~~~ 77 (136)
T 3hdv_A 6 ARPLVLVVD----DNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRM-QPE---SGLDLIRTIRAS 77 (136)
T ss_dssp -CCEEEEEC----SCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCC-SSS---CHHHHHHHHHTS
T ss_pred CCCeEEEEC----CCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccC-CCC---CHHHHHHHHHhc
Confidence 356666654 35667788889999999987532 2238999996432 121 234556666654
Q ss_pred ---CCCEE-EECcccCCCh-hhhccccc-EEEcCCCHHHHHHHHHHHhcCC
Q 006836 125 ---KKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (629)
Q Consensus 125 ---~~~VV-VgGc~a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~g~ 169 (629)
+.+|| +++....... +......+ ++.-+-....+...|+....|.
T Consensus 78 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 78 ERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp TTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred CCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 23454 4543221111 12233444 4667777788888888877664
No 75
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=31.50 E-value=28 Score=26.63 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=23.6
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHHHHh
Q 006836 593 MGEWGVVDRALLGGMLVSFLIILALLIHVG 622 (629)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (629)
-+-|-.||--.+-=++..|++++|++||+.
T Consensus 7 ~KIWlvvdP~~~L~~l~~~v~vlAllIH~~ 36 (56)
T 1lgh_A 7 YKIWLVINPSTWLPVIWIVATVVAIAVHAA 36 (56)
T ss_dssp GGHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCceeHHHHHHHHHHHHHHHHHH
Confidence 367888887666666777888999999975
No 76
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=31.32 E-value=1.5e+02 Score=27.78 Aligned_cols=87 Identities=20% Similarity=0.173 Sum_probs=54.8
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCCC
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~~ 138 (629)
.++++++|+=..+ +.+.+...| |+ |+... ++.++ +.+...++++++.|..+||||-.+...
T Consensus 95 ~kIavvg~~~~~~--~~~~~~~ll---~~---------~i~~~---~~~~~--~e~~~~i~~l~~~G~~vvVG~~~~~~~ 155 (196)
T 2q5c_A 95 NELALIAYKHSIV--DKHEIEAML---GV---------KIKEF---LFSSE--DEITTLISKVKTENIKIVVSGKTVTDE 155 (196)
T ss_dssp SEEEEEEESSCSS--CHHHHHHHH---TC---------EEEEE---EECSG--GGHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred CcEEEEeCcchhh--HHHHHHHHh---CC---------ceEEE---EeCCH--HHHHHHHHHHHHCCCeEEECCHHHHHH
Confidence 5899999864444 445666666 33 33333 34433 345678899999999999999776433
Q ss_pred hhhhcccccEEEcCCCHHHHHHHHHHHh
Q 006836 139 RDLKELEGVSIVGVQQIDRVVEVVEETL 166 (629)
Q Consensus 139 ~e~~~~~~d~VvG~~e~~~l~ell~~~~ 166 (629)
.+ ++.-..++-....+.+.+.++++.
T Consensus 156 A~--~~Gl~~vli~sg~eSI~~Ai~eA~ 181 (196)
T 2q5c_A 156 AI--KQGLYGETINSGEESLRRAIEEAL 181 (196)
T ss_dssp HH--HTTCEEEECCCCHHHHHHHHHHHH
T ss_pred HH--HcCCcEEEEecCHHHHHHHHHHHH
Confidence 32 233345555555677887777653
No 77
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=30.42 E-value=2.8e+02 Score=27.61 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=16.2
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhCCCC
Q 006836 321 SAMNREYTLSDFRTVVDTLIELVPGM 346 (629)
Q Consensus 321 k~M~R~~t~e~~~e~I~~lr~~~pgi 346 (629)
+.+..|.+.+++.+.++.+|+..+.+
T Consensus 73 rAL~~G~~~~~~~~~v~~~r~~~~~~ 98 (271)
T 3nav_A 73 RALAAKTTPDICFELIAQIRARNPET 98 (271)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 44556677777777777777653343
No 78
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=29.79 E-value=1.1e+02 Score=25.40 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=58.1
Q ss_pred CCceEEEEecCcccChhhHHHHHHHHHhcC-ceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhC
Q 006836 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (629)
Q Consensus 57 ~~~~v~i~TlGC~~N~~dse~m~~~L~~~G-~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~ 124 (629)
.+++|.|+. -+....+.+...|+..| |++... ...+|+|++..-.-.. ...++++++++.
T Consensus 13 ~~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~----~g~~~~~~l~~~ 84 (135)
T 3snk_A 13 KRKQVALFS----SDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDL----LGKPGIVEARAL 84 (135)
T ss_dssp CCEEEEEEC----SCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGG----GGSTTHHHHHGG
T ss_pred CCcEEEEEc----CCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCc----hHHHHHHHHHhh
Confidence 356777664 35667788999999999 886431 3568999996532211 123445555543
Q ss_pred --CCCE-EEECcccCCCh-hhhccccc-EEEcCCCHHHHHHHHHHHhcC
Q 006836 125 --KKPL-VVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (629)
Q Consensus 125 --~~~V-VVgGc~a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~g 168 (629)
+.+| ++++....... +.....++ ++.-+-....+...+.....+
T Consensus 85 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 85 WATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp GTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 3454 45553321111 12233444 566666767777777655443
No 79
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=29.54 E-value=76 Score=31.57 Aligned_cols=76 Identities=9% Similarity=0.176 Sum_probs=42.8
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC-
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK- 125 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~- 125 (629)
|+++-|+- | ..=......+...|++.||+++.. ..+.|+||+.-..-..-.+.. .+.++++-+.|
T Consensus 4 m~~vLiV~-g-~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l~~~~-~~~L~~yV~~GG 80 (259)
T 3rht_A 4 MTRVLYCG-D-TSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMTAQA-IDQLVTMVKAGC 80 (259)
T ss_dssp --CEEEEE-S-SCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGBCHHH-HHHHHHHHHTTC
T ss_pred CceEEEEC-C-CCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccCCHHH-HHHHHHHHHhCC
Confidence 56776662 1 111346788999999999987431 136799998532211112323 33444444455
Q ss_pred CCEEEECcccC
Q 006836 126 KPLVVAGCVPQ 136 (629)
Q Consensus 126 ~~VVVgGc~a~ 136 (629)
..|++||...-
T Consensus 81 gLi~~gG~~s~ 91 (259)
T 3rht_A 81 GLVMLGGWESY 91 (259)
T ss_dssp EEEEECSTTSS
T ss_pred eEEEecCcccc
Confidence 46778887653
No 80
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=29.15 E-value=3e+02 Score=26.81 Aligned_cols=117 Identities=10% Similarity=0.106 Sum_probs=69.4
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006836 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (629)
Q Consensus 218 ~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (629)
.|..++++.++-++.+++.|++-|.++-.+ ..-.+.++++.+.++ . ..+..+.. . ..+..+ .
T Consensus 40 ir~~~~~~a~~~a~al~~gGi~~iEvt~~t---------~~a~e~I~~l~~~~~--~-~~iGaGTV--l-t~~~a~---~ 101 (232)
T 4e38_A 40 IAIDNAEDIIPLGKVLAENGLPAAEITFRS---------DAAVEAIRLLRQAQP--E-MLIGAGTI--L-NGEQAL---A 101 (232)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCT--T-CEEEEECC--C-SHHHHH---H
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---------CCHHHHHHHHHHhCC--C-CEEeECCc--C-CHHHHH---H
Confidence 355678899999999999999998886321 123688888888764 2 33444432 1 123332 2
Q ss_pred HHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 006836 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (629)
Q Consensus 298 l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d 377 (629)
....+ ..+++.|- .++ +.++.++++ |+.+..++. |..++.+. .+++.+
T Consensus 102 Ai~AG--A~fIvsP~--~~~----------------~vi~~~~~~--gi~~ipGv~------TptEi~~A----~~~Gad 149 (232)
T 4e38_A 102 AKEAG--ATFVVSPG--FNP----------------NTVRACQEI--GIDIVPGVN------NPSTVEAA----LEMGLT 149 (232)
T ss_dssp HHHHT--CSEEECSS--CCH----------------HHHHHHHHH--TCEEECEEC------SHHHHHHH----HHTTCC
T ss_pred HHHcC--CCEEEeCC--CCH----------------HHHHHHHHc--CCCEEcCCC------CHHHHHHH----HHcCCC
Confidence 22222 56676552 233 344556666 666543322 67666555 467888
Q ss_pred eEEEEec
Q 006836 378 QVHISQF 384 (629)
Q Consensus 378 ~v~i~~y 384 (629)
.+.+|+.
T Consensus 150 ~vK~FPa 156 (232)
T 4e38_A 150 TLKFFPA 156 (232)
T ss_dssp EEEECST
T ss_pred EEEECcC
Confidence 8877543
No 81
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=28.71 E-value=2e+02 Score=27.69 Aligned_cols=132 Identities=12% Similarity=0.148 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCcE--EEEeecCC---CCCCCCcCCCHHHHHHHHHHhC-CCCCCceEEEeecCCcchhHHH
Q 006836 219 GSYTVESLVGRVRTVIADGVKE--VWLSSEDT---GAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNPPFILEHL 292 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~Gvke--I~L~g~d~---~~yg~d~~~~l~eLL~~L~~~i-~~~~~~~iri~~~~p~~i~~~l 292 (629)
-+.+..++-++++.+.+.|+.. +-+.+..| .++| +++++.|++.. +. -...+.+...+|... .
T Consensus 12 l~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G-------~~~v~~ir~~~~~~-~~~dvhLmv~~p~~~---i 80 (228)
T 3ovp_A 12 LNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFG-------HPVVESLRKQLGQD-PFFDMHMMVSKPEQW---V 80 (228)
T ss_dssp TTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBC-------HHHHHHHHHHHCSS-SCEEEEEECSCGGGG---H
T ss_pred eeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccC-------HHHHHHHHHhhCCC-CcEEEEEEeCCHHHH---H
Confidence 3455667788999998888874 44555443 2333 56788887653 20 123455554456432 2
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 006836 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372 (629)
Q Consensus 293 ~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~ 372 (629)
+.+.+ . + ...+++..|+... ..+.++.++++ |+.+...+- |+...+.+++.+ .
T Consensus 81 ~~~~~---a-G-ad~itvH~Ea~~~--------------~~~~i~~i~~~--G~k~gval~---p~t~~e~l~~~l---~ 133 (228)
T 3ovp_A 81 KPMAV---A-G-ANQYTFHLEATEN--------------PGALIKDIREN--GMKVGLAIK---PGTSVEYLAPWA---N 133 (228)
T ss_dssp HHHHH---H-T-CSEEEEEGGGCSC--------------HHHHHHHHHHT--TCEEEEEEC---TTSCGGGTGGGG---G
T ss_pred HHHHH---c-C-CCEEEEccCCchh--------------HHHHHHHHHHc--CCCEEEEEc---CCCCHHHHHHHh---c
Confidence 22222 1 2 5677777777642 45678888898 888755543 443433333222 1
Q ss_pred hcCCCeEEEEeceeCCCCcc
Q 006836 373 EYKFPQVHISQFYPRPGTPA 392 (629)
Q Consensus 373 ~l~~d~v~i~~ysP~PGTpa 392 (629)
.+|.+. ..+-.||.--
T Consensus 134 --~~D~Vl--~msv~pGf~G 149 (228)
T 3ovp_A 134 --QIDMAL--VMTVEPGFGG 149 (228)
T ss_dssp --GCSEEE--EESSCTTTCS
T ss_pred --cCCeEE--EeeecCCCCC
Confidence 256544 4555778743
No 82
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.53 E-value=2.4e+02 Score=22.89 Aligned_cols=93 Identities=11% Similarity=0.041 Sum_probs=52.7
Q ss_pred ChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhC----CCCE-EEECcc
Q 006836 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----KKPL-VVAGCV 134 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~----~~~V-VVgGc~ 134 (629)
|....+.+...|...||++... ...+|+|+++...- .. ...++++++++. +.+| ++++..
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~---~g~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 12 YQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLP-DT---SGLALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCS-SS---BHHHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCC-CC---CHHHHHHHHHhhhccCCCCEEEEECCc
Confidence 4566778888899999876432 24689999965332 21 234555666554 2344 455554
Q ss_pred cCCChhhhccccc-EEEcCCCHHHHHHHHHHHhc
Q 006836 135 PQGSRDLKELEGV-SIVGVQQIDRVVEVVEETLK 167 (629)
Q Consensus 135 a~~~~e~~~~~~d-~VvG~~e~~~l~ell~~~~~ 167 (629)
...........++ ++.-+-....+.+.+.....
T Consensus 88 ~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 88 KNDLGKEACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred chhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 3333222222334 56667677777777765543
No 83
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=27.75 E-value=3.1e+02 Score=27.20 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 006836 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (629)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~ 382 (629)
|.++..++++.+.+...| +|+|.-+.+-++..+..+.+++++.|.+-+.
T Consensus 49 s~~Er~~v~~~~~~~~~g------vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~ 97 (286)
T 2r91_A 49 SLQEKMELTDAATSAARR------VIVQVASLNADEAIALAKYAESRGAEAVASL 97 (286)
T ss_dssp CHHHHHHHHHHHHHHCSS------EEEECCCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHHHHHHhCC------EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 678999999999998767 8999977788888888999999999976654
No 84
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=27.64 E-value=1.3e+02 Score=27.23 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=45.8
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeC-------CCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~-------~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV-V 130 (629)
++|++ +||.....=...++..|...|+.... ...+-|++++=|-+ ..+ ..+.+.++.+|++|.+|| +
T Consensus 38 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~s--G~t-~~~~~~~~~ak~~g~~vi~I 112 (186)
T 1m3s_A 38 HQIFT--AGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGS--GET-KSLIHTAAKAKSLHGIVAAL 112 (186)
T ss_dssp SCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSS--SCC-HHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEE--EecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCC--CCc-HHHHHHHHHHHHCCCEEEEE
Confidence 45555 57777777788888899888876432 12345777663333 223 356778889999998755 6
Q ss_pred ECc
Q 006836 131 AGC 133 (629)
Q Consensus 131 gGc 133 (629)
++-
T Consensus 113 T~~ 115 (186)
T 1m3s_A 113 TIN 115 (186)
T ss_dssp ESC
T ss_pred ECC
Confidence 664
No 85
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=27.10 E-value=3e+02 Score=27.49 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccccCCCCCHHHHHHH
Q 006836 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGTpa~~~~~v~~~~~~~R 406 (629)
.|.+++...++.+.+..+ +.+..|+=.|| |.+.+++.+++..+.+.+..-+++=--...+|. .-+|.++..+|
T Consensus 59 vt~~em~~~~~~I~~~~~-~pviaD~d~Gy-g~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k-----~l~~~~e~~~~ 131 (275)
T 2ze3_A 59 LTRDEMGREVEAIVRAVA-IPVNADIEAGY-GHAPEDVRRTVEHFAALGVAGVNLEDATGLTPT-----ELYDLDSQLRR 131 (275)
T ss_dssp SCHHHHHHHHHHHHHHCS-SCEEEECTTCS-SSSHHHHHHHHHHHHHTTCSEEEEECBCSSSSS-----CBCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcC-CCEEeecCCCC-CCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCC-----ccCCHHHHHHH
Confidence 688999999999998865 78999999997 889999999999999999998888433222222 24778888888
Q ss_pred HHHHHHHHH
Q 006836 407 SRELTSVFE 415 (629)
Q Consensus 407 ~~~L~~l~~ 415 (629)
.+.+.+...
T Consensus 132 I~aa~~a~~ 140 (275)
T 2ze3_A 132 IEAARAAID 140 (275)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHh
Confidence 777776655
No 86
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=27.07 E-value=2e+02 Score=24.05 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=59.8
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcC-ceeeCC------------C-CCCCEEEEeecccccchHHHHHHHHHHHhh
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDN------------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G-~~~~~~------------~-~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (629)
..+|.|+. -+....+.+...|...| |+++.. . ..+|+|+++... +. ....++++++++
T Consensus 20 ~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l---~~-~~g~~~~~~l~~ 91 (146)
T 4dad_A 20 MINILVAS----EDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAA---LD-TAELAAIEKLSR 91 (146)
T ss_dssp GCEEEEEC----SCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTT---CC-HHHHHHHHHHHH
T ss_pred CCeEEEEe----CCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC---CC-ccHHHHHHHHHH
Confidence 45676664 34666788899999999 876431 2 678999996432 11 223455666654
Q ss_pred C--CCCE-EEECcccCCCh-hhhccccc-EEEcCCCHHHHHHHHHHHhcC
Q 006836 124 A--KKPL-VVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (629)
Q Consensus 124 ~--~~~V-VVgGc~a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~g 168 (629)
. +.+| ++++....... +.....++ ++.-.-....+...|.....+
T Consensus 92 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 92 LHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp HCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 4 3444 45553221111 11233343 566666777888888776654
No 87
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=26.92 E-value=88 Score=31.90 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CC--Cc---CCCHHHHHHHHHHh
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GR--DI---GVNLPILLNAIVAE 269 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~y-g~--d~---~~~l~eLL~~L~~~ 269 (629)
.++.+++.+.+..+.+.|++.|..+..|.... |. +. -..-.+|++.|.+.
T Consensus 82 ~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~ 137 (310)
T 3apt_A 82 GQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRER 137 (310)
T ss_dssp TSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 47889999999999999999988776665443 30 10 12456777777654
No 88
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=26.52 E-value=2.2e+02 Score=22.95 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=50.0
Q ss_pred ChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhh--CCCCE-EEECcccC
Q 006836 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPL-VVAGCVPQ 136 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~--~~~~V-VVgGc~a~ 136 (629)
|....+.+...|...||++... ...+|+++++...- ... ..+.++++++ +..+| ++++....
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~-~~~---g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (124)
T 1srr_A 12 QSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIP-GMD---GIEILKRMKVIDENIRVIIMTAYGEL 87 (124)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCT-TCC---HHHHHHHHHHHCTTCEEEEEESSCCH
T ss_pred CHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCC-CCC---HHHHHHHHHHhCCCCCEEEEEccCch
Confidence 3455667777888788875422 23579999964321 111 2344455543 33444 45554321
Q ss_pred CCh-hhhcccc-cEEEcCCCHHHHHHHHHHHhcC
Q 006836 137 GSR-DLKELEG-VSIVGVQQIDRVVEVVEETLKG 168 (629)
Q Consensus 137 ~~~-e~~~~~~-d~VvG~~e~~~l~ell~~~~~g 168 (629)
... +...... +++.-+-....+...++....+
T Consensus 88 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 88 DMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp HHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 111 1112233 4566676777777777765543
No 89
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=26.51 E-value=2.7e+02 Score=23.06 Aligned_cols=94 Identities=6% Similarity=0.006 Sum_probs=53.1
Q ss_pred ChhhHHHHHHHHHhcCceeeCC-------------CCCCCEEEEeecccccchHHHHHHHHHHHhhC--CCCEE-EECcc
Q 006836 71 NQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCV 134 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~~~~~-------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VV-VgGc~ 134 (629)
|....+.+...|...||.+... ...+|+|+++...- ... ..++++++++. +.+|| +++..
T Consensus 12 ~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~-~~~---g~~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 12 ESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMP-KLS---GMDILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCS-SSC---HHHHHHHHHHHCTTCEEEEEECTT
T ss_pred CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCC-CCc---HHHHHHHHHHhCCCCeEEEEECCC
Confidence 5666778888898889876431 35789999975432 222 23444545443 34554 44432
Q ss_pred cCCCh-hhhccccc-EEEcCCCHHHHHHHHHHHhcC
Q 006836 135 PQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (629)
Q Consensus 135 a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~g 168 (629)
..... +.....++ ++.-+-....+...+.....+
T Consensus 88 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 88 DLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp CHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 11111 12233444 566666777788777766543
No 90
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=26.40 E-value=1.4e+02 Score=29.12 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEE------------cCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCC
Q 006836 328 TLSDFRTVVDTLIELVPGMQIATDIIC------------GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (629)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi~i~td~Iv------------GfPGETeedf~eTl~fl~~l~~d~v~i~~ysP~PGT 390 (629)
..+.+....+.+++.+|+..+..-|.- +-| .+.+.++-+.+-+.+.+.+.+++|.+|+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P-----~i~~al~~l~~~G~~~ivV~Pl~l~~G~ 93 (269)
T 2xvy_A 24 ARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAP-----SPAEALAGMAEEGFTHVAVQSLHTIPGE 93 (269)
T ss_dssp TTHHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCC-----CHHHHHHHHHHTTCCEEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCC-----CHHHHHHHHHHCCCCEEEEEeceeeccH
Confidence 445677777888888888888777764 444 3666777788889999999999987775
No 91
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=26.39 E-value=3e+02 Score=23.31 Aligned_cols=93 Identities=15% Similarity=0.107 Sum_probs=51.0
Q ss_pred ChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhC--CCCEE-EECcccC
Q 006836 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCVPQ 136 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VV-VgGc~a~ 136 (629)
|....+.+...|...||++... ...+|+++++...- ... ..++++.+++. +.+|| +++....
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~-~~~---g~~~~~~l~~~~~~~pii~ls~~~~~ 87 (155)
T 1qkk_A 12 DRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMP-GMD---GLALFRKILALDPDLPMILVTGHGDI 87 (155)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCS-SSC---HHHHHHHHHHHCTTSCEEEEECGGGH
T ss_pred CHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCC-CCC---HHHHHHHHHhhCCCCCEEEEECCCCh
Confidence 4556778888999999986431 34689999975332 212 23344444433 44555 5543221
Q ss_pred CCh-hhhccccc-EEEcCCCHHHHHHHHHHHhc
Q 006836 137 GSR-DLKELEGV-SIVGVQQIDRVVEVVEETLK 167 (629)
Q Consensus 137 ~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~ 167 (629)
... .......+ ++.-+-....+...+.....
T Consensus 88 ~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 88 PMAVQAIQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp HHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 111 11233444 46666666777777765543
No 92
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=25.98 E-value=2.8e+02 Score=23.65 Aligned_cols=100 Identities=9% Similarity=0.044 Sum_probs=55.4
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceee-C--C---------CC--CCCEEEEeecccccchHHHHHHHHHHHhh
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-D--N---------SE--EADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~-~--~---------~~--~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (629)
+.+|.|+. -|....+.+...|++.||+++ . + .. .+|+|+++...- ... ..++++++++
T Consensus 36 ~~~Ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~-~~~---g~~~~~~lr~ 107 (157)
T 3hzh_A 36 PFNVLIVD----DSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMP-KMD---GITCLSNIME 107 (157)
T ss_dssp ECEEEEEC----SCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCS-SSC---HHHHHHHHHH
T ss_pred ceEEEEEe----CCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCC-Ccc---HHHHHHHHHh
Confidence 34666653 367778889999999999865 2 1 12 679999964322 212 2344555544
Q ss_pred C--CCCEE-EECcccCCCh-hhhccccc-EEEcCCCHHHHHHHHHHH
Q 006836 124 A--KKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEET 165 (629)
Q Consensus 124 ~--~~~VV-VgGc~a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~ 165 (629)
. +.+|| +++....... +.....++ ++.-.-....+.+.|...
T Consensus 108 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 108 FDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp HCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHT
T ss_pred hCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 3 34555 4443211111 12233444 466666666777766643
No 93
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=25.90 E-value=2.7e+02 Score=23.74 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=58.1
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhC---
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--- 124 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--- 124 (629)
++|.|+. -|....+.+...|+..||.+... ...+|+|+++.-.- ... ..++++++++.
T Consensus 8 ~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~-~~~---g~~~~~~lr~~~~~ 79 (154)
T 3gt7_A 8 GEILIVE----DSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMP-EMD---GYALCRWLKGQPDL 79 (154)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCS-SSC---HHHHHHHHHHSTTT
T ss_pred CcEEEEe----CCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCC-CCC---HHHHHHHHHhCCCc
Confidence 4555542 35667788889999999876432 45689999965322 111 24455555543
Q ss_pred -CCCEE-EECcccCCCh-hhhccccc-EEEcCCCHHHHHHHHHHHhcC
Q 006836 125 -KKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (629)
Q Consensus 125 -~~~VV-VgGc~a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~g 168 (629)
+.+|| +++....... +.....++ ++.-+-....+...+.....+
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 80 RTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp TTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 34554 5553221111 11233444 466666777788887776654
No 94
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*
Probab=25.34 E-value=2.9e+02 Score=28.81 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=52.8
Q ss_pred CCHHHHHHHH-HHHHHCCCcEEEEeecCCCCCCC-CcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006836 221 YTVESLVGRV-RTVIADGVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (629)
Q Consensus 221 r~~e~Iv~Ei-~~l~~~GvkeI~L~g~d~~~yg~-d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (629)
.+++++.+++ +.+.+.|++.|.+=-.....+.. +. ..-.+.++++++.++ ....+++. .|-..-.+...++.+.
T Consensus 138 ~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~~~~~-~~d~~~v~avR~a~g--~~~~l~vD-aN~~~~~~~A~~~~~~ 213 (393)
T 4dwd_A 138 RSVDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDI-PGDIAKARAVRELLG--PDAVIGFD-ANNGYSVGGAIRVGRA 213 (393)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCCSCCH-HHHHHHHHHHHHHHC--TTCCEEEE-CTTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEccCCCCcccccCH-HHHHHHHHHHHHHhC--CCCeEEEE-CCCCCCHHHHHHHHHH
Confidence 4689999999 99999999998873210000000 11 122566777777665 45567776 3332222222233333
Q ss_pred HhCCCcccccccccCCCCHHHHHhh
Q 006836 299 LRHPCVYSFLHVPVQSGSDAVLSAM 323 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgsd~vLk~M 323 (629)
+...+ ..++.=|+...+-+.++.+
T Consensus 214 L~~~~-i~~iEqP~~~~d~~~~~~l 237 (393)
T 4dwd_A 214 LEDLG-YSWFEEPVQHYHVGAMGEV 237 (393)
T ss_dssp HHHTT-CSEEECCSCTTCHHHHHHH
T ss_pred HHhhC-CCEEECCCCcccHHHHHHH
Confidence 43333 4566666654444444443
No 95
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=25.24 E-value=2.5e+02 Score=29.11 Aligned_cols=102 Identities=11% Similarity=-0.034 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC---------Cc---CCCHHHHHHHHHHhCCCCCCceEEEeecCCcc
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR---------DI---GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~---------d~---~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~ 287 (629)
..+++++.++++.+.+.|++.+.+-......+|. +. .....+.++++.+.++ ....+++. .|-..
T Consensus 144 ~~~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG--~d~~l~vD-an~~~ 220 (403)
T 2ox4_A 144 KGRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVG--PDVDIIVE-NHGHT 220 (403)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHC--TTSEEEEE-CTTCS
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhC--CCCeEEEE-CCCCC
Confidence 4589999999999999999998874210011121 10 0123567777777664 45667776 33322
Q ss_pred hhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcC
Q 006836 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325 (629)
Q Consensus 288 i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R 325 (629)
-.+...++.+.+...+ ..++.=|+...+-+.++.+++
T Consensus 221 ~~~~ai~~~~~l~~~~-i~~iE~P~~~~d~~~~~~l~~ 257 (403)
T 2ox4_A 221 DLVSAIQFAKAIEEFN-IFFYEEINTPLNPRLLKEAKK 257 (403)
T ss_dssp CHHHHHHHHHHHGGGC-EEEEECCSCTTSTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-CCEEeCCCChhhHHHHHHHHH
Confidence 2233333444444433 456666665545455555443
No 96
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=25.21 E-value=3.3e+02 Score=28.18 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (629)
.++++++++++.+++.|++.+.+=- |.+. ..-.+.++++++.++ ....+++. .|-..-.+....+.+.+.
T Consensus 141 ~~~e~~~~~a~~~~~~Gf~~~KlK~------g~~~-~~d~~~v~avR~a~g--~~~~L~vD-aN~~w~~~~A~~~~~~l~ 210 (379)
T 3r0u_A 141 GNVAETIQNIQNGVEANFTAIKVKT------GADF-NRDIQLLKALDNEFS--KNIKFRFD-ANQGWNLAQTKQFIEEIN 210 (379)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEC------SSCH-HHHHHHHHHHHHHCC--TTSEEEEE-CTTCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeec------CCCH-HHHHHHHHHHHHhcC--CCCeEEEe-CCCCcCHHHHHHHHHHHh
Confidence 3689999999999999999988742 1111 122567888888775 45678776 343322233333444444
Q ss_pred C--CCcccccccccCCCCHHHHHhhcC
Q 006836 301 H--PCVYSFLHVPVQSGSDAVLSAMNR 325 (629)
Q Consensus 301 ~--~~~~~~l~IGlESgsd~vLk~M~R 325 (629)
. .+ ..++.=|+-..+.+.++.+.+
T Consensus 211 ~~~~~-l~~iEeP~~~~d~~~~~~l~~ 236 (379)
T 3r0u_A 211 KYSLN-VEIIEQPVKYYDIKAMAEITK 236 (379)
T ss_dssp TSCCC-EEEEECCSCTTCHHHHHHHHH
T ss_pred hcCCC-cEEEECCCCcccHHHHHHHHh
Confidence 4 23 456776776666566655543
No 97
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=25.15 E-value=2.6e+02 Score=26.49 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCc
Q 006836 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (629)
Q Consensus 225 ~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (629)
+.++.++.+.+.|+..+.+.+.|-...+. ..+ ++++++.+... ..-+.-+.++. .+. +..++..+
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~~---ipv~v~ggI~~---~~~---~~~~l~~G-- 97 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTG---DNR-ALIAEVAQAMD---IKVELSGGIRD---DDT---LAAALATG-- 97 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSC---CCH-HHHHHHHHHCS---SEEEEESSCCS---HHH---HHHHHHTT--
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCC---ChH-HHHHHHHHhcC---CcEEEECCcCC---HHH---HHHHHHcC--
Confidence 45556677778999999998644322222 345 88889887642 22222222321 122 23333332
Q ss_pred ccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEE------EcCCCCCHHHHHHHHHHHHhcCCCe
Q 006836 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII------CGFPGETDEDFNQTVNLIKEYKFPQ 378 (629)
Q Consensus 305 ~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~I------vGfPGETeedf~eTl~fl~~l~~d~ 378 (629)
+..+++|.++..+ .+.+.+.++.+. . .+.+..|.- -|....+. +..+.++.+.+++++.
T Consensus 98 ad~V~lg~~~l~~-----------p~~~~~~~~~~g-~--~~~~~l~~~~g~v~~~g~~~~~~-~~~e~~~~~~~~G~~~ 162 (244)
T 1vzw_A 98 CTRVNLGTAALET-----------PEWVAKVIAEHG-D--KIAVGLDVRGTTLRGRGWTRDGG-DLYETLDRLNKEGCAR 162 (244)
T ss_dssp CSEEEECHHHHHC-----------HHHHHHHHHHHG-G--GEEEEEEEETTEECCSSSCCCCC-BHHHHHHHHHHTTCCC
T ss_pred CCEEEECchHhhC-----------HHHHHHHHHHcC-C--cEEEEEEccCCEEEEcCcccCCC-CHHHHHHHHHhCCCCE
Confidence 6778877665321 233334444332 1 234444543 12222222 4445566677889998
Q ss_pred EEEEecee
Q 006836 379 VHISQFYP 386 (629)
Q Consensus 379 v~i~~ysP 386 (629)
+.+....+
T Consensus 163 i~~~~~~~ 170 (244)
T 1vzw_A 163 YVVTDIAK 170 (244)
T ss_dssp EEEEEC--
T ss_pred EEEeccCc
Confidence 87765543
No 98
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=25.10 E-value=5.3e+02 Score=26.70 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecC-CC----CCCCCcC-----CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSED-TG----AYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d-~~----~yg~d~~-----~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~ 290 (629)
.+++++.++++.+.+.|++.+.+-..+ .+ .|+.... ....+.++++++.+. ....+++. .|-..-.+
T Consensus 148 ~~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~~e~v~avRea~G--~d~~l~vD-an~~~~~~ 224 (410)
T 2qq6_A 148 GSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAVG--PEVEVAID-MHGRFDIP 224 (410)
T ss_dssp THHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHHHHC--SSSEEEEE-CTTCCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHHHHHHHHHHHhcC--CCCEEEEE-CCCCCCHH
Confidence 468999999999999999998875310 01 1121111 123567777777664 45667776 33322223
Q ss_pred HHHHHHHHHhCCCcccccccccCCCCHHHHHhhcC
Q 006836 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325 (629)
Q Consensus 291 ~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R 325 (629)
...++.+.+...+ ..++.=|+...+-+.++.+++
T Consensus 225 ~a~~~~~~l~~~~-i~~iEeP~~~~d~~~~~~l~~ 258 (410)
T 2qq6_A 225 SSIRFARAMEPFG-LLWLEEPTPPENLDALAEVRR 258 (410)
T ss_dssp HHHHHHHHHGGGC-CSEEECCSCTTCHHHHHHHHT
T ss_pred HHHHHHHHHhhcC-CCeEECCCChhhHHHHHHHHh
Confidence 3323444444433 456777776666666666655
No 99
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=25.00 E-value=2.7e+02 Score=29.14 Aligned_cols=45 Identities=7% Similarity=-0.168 Sum_probs=28.5
Q ss_pred hcC-CCCHHHHHHHHHHHHHhCCCCEEE-EEEEEcCCCCCHHHHHHHH
Q 006836 323 MNR-EYTLSDFRTVVDTLIELVPGMQIA-TDIICGFPGETDEDFNQTV 368 (629)
Q Consensus 323 M~R-~~t~e~~~e~I~~lr~~~pgi~i~-td~IvGfPGETeedf~eTl 368 (629)
|+| |.+.+++.++++.+++. |++.+. ..+.+|--..+.+.+.+.+
T Consensus 174 ~sRfG~~~~e~~~l~~~~~~~-~~l~l~Gl~~H~gs~~~~~~~~~~~~ 220 (425)
T 2qgh_A 174 ENKFGVGEKEALEMFLWAKKS-AFLEPVSVHFHIGSQLLDLEPIIEAS 220 (425)
T ss_dssp TSSSSBCHHHHHHHHHHHHHC-SSEEEEEEECCCBSSBCCHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhC-CCccEEEEEEECCCCCCCHHHHHHHH
Confidence 666 57889999999988874 787754 3444564333444444443
No 100
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=24.78 E-value=2.4e+02 Score=29.34 Aligned_cols=101 Identities=9% Similarity=0.079 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCC-------------CCCCcC----CCHHHHHHHHHHhCCCCCCceEEEee
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA-------------YGRDIG----VNLPILLNAIVAELPPDGSTMLRIGM 282 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~-------------yg~d~~----~~l~eLL~~L~~~i~~~~~~~iri~~ 282 (629)
..+++++.++++.+.+.|++.+.+-...... ||.... ....+.++++++.++ ....+++.
T Consensus 148 ~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G--~d~~l~vD- 224 (410)
T 2gl5_A 148 LVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMG--DDADIIVE- 224 (410)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHC--SSSEEEEE-
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcC--CCCEEEEE-
Confidence 3579999999999999999998874310011 111100 123567777777664 45667776
Q ss_pred cCCcchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc
Q 006836 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324 (629)
Q Consensus 283 ~~p~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~ 324 (629)
.|-..-.+...++.+.+...+ ..++.-|+...+-+.++.++
T Consensus 225 an~~~~~~~ai~~~~~l~~~~-i~~iE~P~~~~~~~~~~~l~ 265 (410)
T 2gl5_A 225 IHSLLGTNSAIQFAKAIEKYR-IFLYEEPIHPLNSDNMQKVS 265 (410)
T ss_dssp CTTCSCHHHHHHHHHHHGGGC-EEEEECSSCSSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcC-CCeEECCCChhhHHHHHHHH
Confidence 332222233223444444433 45666666555555554444
No 101
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=24.77 E-value=2.8e+02 Score=22.44 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhC--CCCEE-EECcccCC
Q 006836 72 QSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCVPQG 137 (629)
Q Consensus 72 ~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VV-VgGc~a~~ 137 (629)
....+.+...|...||.+... ...+|+++++... -... -.+.++++++. +.+|| +++.....
T Consensus 13 ~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~---g~~~~~~l~~~~~~~~ii~~s~~~~~~ 88 (126)
T 1dbw_A 13 EPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRM-PDMS---GVELLRNLGDLKINIPSIVITGHGDVP 88 (126)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCS-TTSC---HHHHHHHHHHTTCCCCEEEEECTTCHH
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCC---HHHHHHHHHhcCCCCCEEEEECCCCHH
Confidence 445667777888888875421 3468999996432 1111 23445555543 34554 55543211
Q ss_pred Ch-hhhcccc-cEEEcCCCHHHHHHHHHHHhc
Q 006836 138 SR-DLKELEG-VSIVGVQQIDRVVEVVEETLK 167 (629)
Q Consensus 138 ~~-e~~~~~~-d~VvG~~e~~~l~ell~~~~~ 167 (629)
.. +...... +++.-+-....+.+.++....
T Consensus 89 ~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 89 MAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 11 1123334 456677777778877776654
No 102
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=24.70 E-value=3e+02 Score=22.83 Aligned_cols=94 Identities=13% Similarity=0.206 Sum_probs=51.6
Q ss_pred ChhhHHHHHHHHHhcCceeeCC-----------C-CCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEE-EECcccCC
Q 006836 71 NQSDSEYMAGQLSAFGYALTDN-----------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCVPQG 137 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~~~~~-----------~-~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV-VgGc~a~~ 137 (629)
|....+.+...|...||++... . ..+|+|+++.-.-.....-.+.+.+++. .+.+|| +++.....
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~~ 91 (140)
T 3h5i_A 14 SKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI--SELPVVFLTAHTEPA 91 (140)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH--CCCCEEEEESSSSCC
T ss_pred CHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC--CCCCEEEEECCCCHH
Confidence 4566778888899899886432 2 5789999965321112222333333432 345554 55543222
Q ss_pred Ch-hhhccccc-EEEcCCCHHHHHHHHHHHh
Q 006836 138 SR-DLKELEGV-SIVGVQQIDRVVEVVEETL 166 (629)
Q Consensus 138 ~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~ 166 (629)
.. +.....++ ++.-+-....+.+.|....
T Consensus 92 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 92 VVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp CCGGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 22 22233444 4666666677777776554
No 103
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=24.58 E-value=3e+02 Score=28.52 Aligned_cols=94 Identities=11% Similarity=0.110 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHH
Q 006836 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~ 299 (629)
..+++++.++++.+.+.|++.|.+= + |.+. ..-.+.++++++.++ ....+++. .|-..-.+...++.+.+
T Consensus 149 ~~~~e~~~~~a~~~~~~G~~~iKiK---v---G~~~-~~d~~~v~avR~a~g--~d~~l~vD-an~~~~~~~A~~~~~~l 218 (389)
T 3ozy_A 149 DLTPDQAADELAGWVEQGFTAAKLK---V---GRAP-RKDAANLRAMRQRVG--ADVEILVD-ANQSLGRHDALAMLRIL 218 (389)
T ss_dssp SCCHHHHHHHHHHHHHTTCSEEEEE---C---CSCH-HHHHHHHHHHHHHHC--TTSEEEEE-CTTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEeec---c---CCCH-HHHHHHHHHHHHHcC--CCceEEEE-CCCCcCHHHHHHHHHHH
Confidence 3578999999999999999998873 1 1111 123567788877764 45667776 33322222222333444
Q ss_pred hCCCcccccccccCCCCHHHHHhhc
Q 006836 300 RHPCVYSFLHVPVQSGSDAVLSAMN 324 (629)
Q Consensus 300 ~~~~~~~~l~IGlESgsd~vLk~M~ 324 (629)
...+ ..++.=|+...+-+.++.++
T Consensus 219 ~~~~-i~~iEqP~~~~d~~~~~~l~ 242 (389)
T 3ozy_A 219 DEAG-CYWFEEPLSIDDIEGHRILR 242 (389)
T ss_dssp HHTT-CSEEESCSCTTCHHHHHHHH
T ss_pred HhcC-CCEEECCCCcccHHHHHHHH
Confidence 3333 45777676655555555555
No 104
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=24.53 E-value=1.9e+02 Score=29.82 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (629)
.++++++++++.+.+.|++.|.+=- |.+. ..-.+.++++++.++ ....+++. .|-..-.+...++.+.+.
T Consensus 139 ~~~e~~~~~a~~~~~~G~~~~K~Kv------G~~~-~~d~~~v~avR~~~g--~~~~l~vD-aN~~~~~~~A~~~~~~l~ 208 (368)
T 3q45_A 139 DEPHKMAADAVQIKKNGFEIIKVKV------GGSK-ELDVERIRMIREAAG--DSITLRID-ANQGWSVETAIETLTLLE 208 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEC------CSCH-HHHHHHHHHHHHHHC--SSSEEEEE-CTTCBCHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEe------cCCH-HHHHHHHHHHHHHhC--CCCeEEEE-CCCCCChHHHHHHHHHHh
Confidence 4789999999999999999988741 1111 122567888887775 45677776 343322232223444444
Q ss_pred CCCcccccccccCCCCHHHHHhhc
Q 006836 301 HPCVYSFLHVPVQSGSDAVLSAMN 324 (629)
Q Consensus 301 ~~~~~~~l~IGlESgsd~vLk~M~ 324 (629)
..+ ..++.=|+...+.+.++.++
T Consensus 209 ~~~-i~~iEqP~~~~~~~~~~~l~ 231 (368)
T 3q45_A 209 PYN-IQHCEEPVSRNLYTALPKIR 231 (368)
T ss_dssp GGC-CSCEECCBCGGGGGGHHHHH
T ss_pred hcC-CCEEECCCChhHHHHHHHHH
Confidence 333 45666666555444454444
No 105
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.53 E-value=2.6e+02 Score=22.08 Aligned_cols=89 Identities=13% Similarity=0.177 Sum_probs=46.5
Q ss_pred ChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhh--CCCC-EEEECcccC
Q 006836 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKP-LVVAGCVPQ 136 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~--~~~~-VVVgGc~a~ 136 (629)
|....+.+...|...||.+... ...+|+++++... .... ..+.++++++ .+.+ |++++....
T Consensus 10 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~---g~~~~~~l~~~~~~~~ii~~s~~~~~ 85 (116)
T 3a10_A 10 EPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEM-PGIS---GLEVAGEIRKKKKDAKIILLTAYSHY 85 (116)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCC-SSSC---HHHHHHHHHHHCTTCCEEEEESCGGG
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCC---HHHHHHHHHccCCCCeEEEEECCcch
Confidence 3455677778888888876432 2358999996432 2211 1334444443 2345 446654322
Q ss_pred CChhhhccccc-EEEcCCCHHHHHHHHHH
Q 006836 137 GSRDLKELEGV-SIVGVQQIDRVVEVVEE 164 (629)
Q Consensus 137 ~~~e~~~~~~d-~VvG~~e~~~l~ell~~ 164 (629)
. ........+ ++.-+-....+...++.
T Consensus 86 ~-~~~~~~g~~~~l~Kp~~~~~l~~~i~~ 113 (116)
T 3a10_A 86 R-SDMSSWAADEYVVKSFNFDELKEKVKK 113 (116)
T ss_dssp G-GCGGGGGSSEEEECCSSTHHHHHHHHH
T ss_pred H-HHHHhccccceEECCCCHHHHHHHHHH
Confidence 1 222233334 46555565666666654
No 106
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.1.16.3
Probab=24.29 E-value=4.9e+02 Score=25.66 Aligned_cols=106 Identities=17% Similarity=0.306 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeec-------CCcchhHHHH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 293 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~-------~p~~i~~~l~ 293 (629)
.++++.++.++..-+.|+..+|+.+ +.+.. +-.-++..+.... .+|++++. +|..+.+...
T Consensus 11 ~~~~~~~~~a~~AE~~Gfd~~w~~e-h~~~~------~p~~~la~~Aa~T-----~rI~lgt~v~~~~~~~P~~~A~~~a 78 (321)
T 1f07_A 11 EPIEKIVKLVKLAEDVGFEYAWITD-HYNNK------NVYETLALIAEGT-----ETIKLGPGVTNPYVRSPAITASAIA 78 (321)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEECC-CTTSS------CHHHHHHHHHHTC-----SSCEEEESSBCSSSBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-cccCC------CHHHHHHHHHHhC-----CcceEeeeeecCCCCCHHHHHHHHH
Confidence 4688899888888889999999865 33221 2355677776643 35666642 2222233222
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHhC
Q 006836 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELV 343 (629)
Q Consensus 294 el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~--t~e~~~e~I~~lr~~~ 343 (629)
.| +.+..+ ++.+|+=+|.+.....++..+ ..+.+.+.++.+++..
T Consensus 79 tL-d~ls~G----R~~lGiG~G~~~~~~~~G~~~~~r~~~~~E~l~~l~~lw 125 (321)
T 1f07_A 79 TL-DELSNG----RATLGIGPGDKATFDALGIEWVKPVSTIRDAIAMMRTLL 125 (321)
T ss_dssp HH-HHHTTS----CBCEEECCCCHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHcCC----CeEEEEecCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 22 223222 566777788877778888765 3566777777777653
No 107
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=24.29 E-value=5.7e+02 Score=25.92 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (629)
.+++++.++++.+.+.|++.+.+=- |.+. ..-.+.++++++.++ ....+++. .|-..-.+...++.+.+.
T Consensus 138 ~~~~~~~~~a~~~~~~G~~~~K~K~------g~~~-~~d~~~v~avR~a~g--~~~~l~vD-an~~~~~~~a~~~~~~L~ 207 (354)
T 3jva_A 138 DEPNVMAQKAVEKVKLGFDTLKIKV------GTGI-EADIARVKAIREAVG--FDIKLRLD-ANQAWTPKDAVKAIQALA 207 (354)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEC------CSCH-HHHHHHHHHHHHHHC--TTSEEEEE-CTTCSCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEe------CCCH-HHHHHHHHHHHHHcC--CCCeEEEE-CCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999888731 1110 112566777776664 34566665 232221222222333333
Q ss_pred CCCcccccccccCCCCHHHHHhhc
Q 006836 301 HPCVYSFLHVPVQSGSDAVLSAMN 324 (629)
Q Consensus 301 ~~~~~~~l~IGlESgsd~vLk~M~ 324 (629)
..+ ..+|.=|+...+-+-++.++
T Consensus 208 ~~~-i~~iEqP~~~~d~~~~~~l~ 230 (354)
T 3jva_A 208 DYQ-IELVEQPVKRRDLEGLKYVT 230 (354)
T ss_dssp TSC-EEEEECCSCTTCHHHHHHHH
T ss_pred hcC-CCEEECCCChhhHHHHHHHH
Confidence 322 34555555544444444443
No 108
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=24.27 E-value=3.5e+02 Score=27.74 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhC
Q 006836 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~ 301 (629)
+++++.++++.+.+.|++.|.+-... +. ....+.++++++.++ ....+++. .|-..-.+...++.+.+..
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~iKik~g~------~~-~~~~e~v~avr~a~g--~d~~l~vD-an~~~~~~~a~~~~~~l~~ 214 (379)
T 2rdx_A 145 SEAETRAELARHRAAGYRQFQIKVGA------DW-QSDIDRIRACLPLLE--PGEKAMAD-ANQGWRVDNAIRLARATRD 214 (379)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECCS------CH-HHHHHHHHHHGGGSC--TTCEEEEE-CTTCSCHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccC------CH-HHHHHHHHHHHHhcC--CCCEEEEE-CCCCCCHHHHHHHHHHHHh
Confidence 57889999999999999998874321 11 123577788877664 45667776 3332222333345555555
Q ss_pred CCcccccccccCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC--CHHHHHHHH
Q 006836 302 PCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLIELVPGMQIATDIICGFPGE--TDEDFNQTV 368 (629)
Q Consensus 302 ~~~~~~l~IGlESgsd~vLk~M~R~-----------~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGE--Teedf~eTl 368 (629)
.+ . ++.-|+. +-+.++.+++. ++.+++.++++. . ...+ +++.. +- ....+.+..
T Consensus 215 ~~-i-~iE~P~~--~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~---~--~~d~---v~ik~-~~~GGit~~~~i~ 281 (379)
T 2rdx_A 215 LD-Y-ILEQPCR--SYEECQQVRRVADQPMKLDECVTGLHMAQRIVAD---R--GAEI---CCLKI-SNLGGLSKARRTR 281 (379)
T ss_dssp SC-C-EEECCSS--SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHH---T--CCSE---EEEET-TTTTSHHHHHHHH
T ss_pred CC-e-EEeCCcC--CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHc---C--CCCE---EEEec-cccCCHHHHHHHH
Confidence 44 4 7776665 66666666653 244554444432 2 1111 22221 21 466777778
Q ss_pred HHHHhcCCC
Q 006836 369 NLIKEYKFP 377 (629)
Q Consensus 369 ~fl~~l~~d 377 (629)
++++..++.
T Consensus 282 ~~A~~~g~~ 290 (379)
T 2rdx_A 282 DFLIDNRMP 290 (379)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCe
Confidence 888888775
No 109
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=23.82 E-value=2.6e+02 Score=23.02 Aligned_cols=93 Identities=14% Similarity=0.061 Sum_probs=50.4
Q ss_pred ChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhh--CCCCE-EEECcccC
Q 006836 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPL-VVAGCVPQ 136 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~--~~~~V-VVgGc~a~ 136 (629)
+....+.+...|+..||++... ...+|+++++...- ... -.+.++++++ .+.+| ++++....
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~-~~~---g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (132)
T 3crn_A 12 DTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLP-DME---GTELLEKAHKLRPGMKKIMVTGYASL 87 (132)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCS-SSB---HHHHHHHHHHHCTTSEEEEEESCCCH
T ss_pred CHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCc---hHHHHHHHHhhCCCCcEEEEeccccH
Confidence 4555677888888888876432 23689999964322 111 1334444443 23444 45554321
Q ss_pred CCh-hhhccccc-EEEcCCCHHHHHHHHHHHhc
Q 006836 137 GSR-DLKELEGV-SIVGVQQIDRVVEVVEETLK 167 (629)
Q Consensus 137 ~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~ 167 (629)
... +.....++ ++.-+-....+.+.++....
T Consensus 88 ~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 88 ENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 111 11233444 56666677777777766543
No 110
>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A
Probab=23.73 E-value=2e+02 Score=30.36 Aligned_cols=98 Identities=13% Similarity=0.014 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhC
Q 006836 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (629)
Q Consensus 222 ~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~ 301 (629)
+++++.++++.+.+.|++.|.+--..-..-|......-.+.++++++.++ ....+++. .|-..-.+...++.+.+..
T Consensus 179 ~~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~die~v~avReavG--~d~~L~vD-aN~~~~~~~Ai~~~~~Le~ 255 (412)
T 3stp_A 179 SIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIG--YDNDLMLE-CYMGWNLDYAKRMLPKLAP 255 (412)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHC--SSSEEEEE-CTTCSCHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCcccccchHHHHHHHHHHHHHHcC--CCCeEEEE-CCCCCCHHHHHHHHHHHHh
Confidence 79999999999999999998874210000000000123567788887775 45677776 3332222332234444443
Q ss_pred CCcccccccccCCCCHHHHHhh
Q 006836 302 PCVYSFLHVPVQSGSDAVLSAM 323 (629)
Q Consensus 302 ~~~~~~l~IGlESgsd~vLk~M 323 (629)
.+ ..++.=|+...+.+.++.+
T Consensus 256 ~~-i~~iEeP~~~~d~~~~~~l 276 (412)
T 3stp_A 256 YE-PRWLEEPVIADDVAGYAEL 276 (412)
T ss_dssp GC-CSEEECCSCTTCHHHHHHH
T ss_pred cC-CCEEECCCCcccHHHHHHH
Confidence 33 4566666654444444433
No 111
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=23.71 E-value=3.9e+02 Score=28.26 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecC--CCCCCCCc----CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSED--TGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d--~~~yg~d~----~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~e 294 (629)
.+++++.++++.+++.|++.|.+--.. ...+|... ...-.+.++++++.++ ....+++. .|-..-.+....
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG--~d~~L~vD-an~~~t~~~A~~ 221 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVG--DKADLLFG-THGQFTTAGAIR 221 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHT--TSSEEEEC-CCSCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhC--CCCeEEEe-CCCCCCHHHHHH
Confidence 479999999999999999999873110 00112110 0113567788877765 45667775 333222233333
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhhc
Q 006836 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324 (629)
Q Consensus 295 l~~l~~~~~~~~~l~IGlESgsd~vLk~M~ 324 (629)
+.+.+...+ ..+|.=|+...+.+.++.++
T Consensus 222 ~~~~Le~~~-i~~iEeP~~~~~~~~~~~l~ 250 (433)
T 3rcy_A 222 LGQAIEPYS-PLWYEEPVPPDNVGAMAQVA 250 (433)
T ss_dssp HHHHHGGGC-CSEEECCSCTTCHHHHHHHH
T ss_pred HHHHhhhcC-CCEEECCCChhhHHHHHHHH
Confidence 444444333 45677666555555554443
No 112
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=23.57 E-value=1.8e+02 Score=28.24 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=54.2
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCCCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEEEECcccCCC
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~a~~~ 138 (629)
.+|++++|+=.. .+.+.+...| |+ |+... ++.+ ++.+...++++++.|..+||||-.+...
T Consensus 107 ~kIavVg~~~~~--~~~~~i~~ll---~~---------~i~~~---~~~~--~ee~~~~i~~l~~~G~~vVVG~~~~~~~ 167 (225)
T 2pju_A 107 SSIGVVTYQETI--PALVAFQKTF---NL---------RLDQR---SYIT--EEDARGQINELKANGTEAVVGAGLITDL 167 (225)
T ss_dssp SCEEEEEESSCC--HHHHHHHHHH---TC---------CEEEE---EESS--HHHHHHHHHHHHHTTCCEEEESHHHHHH
T ss_pred CcEEEEeCchhh--hHHHHHHHHh---CC---------ceEEE---EeCC--HHHHHHHHHHHHHCCCCEEECCHHHHHH
Confidence 589999996433 3445566666 32 34433 3333 4467888999999999999999776543
Q ss_pred hhhhcccccEEEcCCCHHHHHHHHHHHh
Q 006836 139 RDLKELEGVSIVGVQQIDRVVEVVEETL 166 (629)
Q Consensus 139 ~e~~~~~~d~VvG~~e~~~l~ell~~~~ 166 (629)
.+ ++....++-.. .+.+.+.++++.
T Consensus 168 A~--~~Gl~~vlI~s-~eSI~~Ai~eA~ 192 (225)
T 2pju_A 168 AE--EAGMTGIFIYS-AATVRQAFSDAL 192 (225)
T ss_dssp HH--HTTSEEEESSC-HHHHHHHHHHHH
T ss_pred HH--HcCCcEEEECC-HHHHHHHHHHHH
Confidence 33 22223444443 578888887654
No 113
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri}
Probab=23.53 E-value=4.9e+02 Score=25.74 Aligned_cols=106 Identities=14% Similarity=0.269 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeec-------CCcchhHHHH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 293 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~-------~p~~i~~~l~ 293 (629)
.+++++++.++..-+.|+..+|+.+ +.+.. +-.-++..+.... .++++++. +|..+.+...
T Consensus 11 ~~~~~~~~~A~~AE~~Gfd~~w~~e-h~~~~------dp~~~laalAa~T-----~rI~lgt~v~~~~~~~P~~~A~~~a 78 (327)
T 1z69_A 11 DPALKIAYYAKLSEQQGFDHVWITD-HYNNR------DVYSTLTVLALNT-----NSIKIGPGVTNSYTRNPAITASSIA 78 (327)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEECC-CTTSS------CHHHHHHHHHHTC-----SSSEEEESCEESSSBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecc-ccccc------CHHHHHHHHHHhC-----CcceEeeeeccCCCCCHHHHHHHHH
Confidence 4688899988888889999999875 33221 2355677776644 34555532 2333333332
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHhC
Q 006836 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELV 343 (629)
Q Consensus 294 el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~--t~e~~~e~I~~lr~~~ 343 (629)
.|. .+..+ ++.+|+=+|.+.....++..+ ..+.+.+.++.+++..
T Consensus 79 tLd-~ls~G----R~~lGvg~G~~~~~~~~G~~~~~r~~~~~E~l~~l~~lw 125 (327)
T 1z69_A 79 SIA-EISGG----RAVLGLGPGDKATFDAMGIAWKKPLATTKEAIQAIRDFI 125 (327)
T ss_dssp HHH-HHHTS----CBCEEEECCCHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHH-HHcCC----CeEEEecCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHh
Confidence 222 23333 456777788877788888765 3566777777777653
No 114
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=23.46 E-value=3.3e+02 Score=27.16 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 006836 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (629)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~ 382 (629)
|.++..++++.+.+...| +|+|.-+.+-++..+..+.+++.+.|.+.+.
T Consensus 50 s~eEr~~v~~~~~~~~~g------viaGvg~~~t~~ai~la~~A~~~Gadavlv~ 98 (293)
T 1w3i_A 50 SPEEKLENLKAVYDVTNK------IIFQVGGLNLDDAIRLAKLSKDFDIVGIASY 98 (293)
T ss_dssp CHHHHHHHHHHHHTTCSC------EEEECCCSCHHHHHHHHHHGGGSCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcCC------EEEecCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 678899999999988666 8999977788888888888899999977664
No 115
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=23.40 E-value=2.3e+02 Score=25.40 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=45.8
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeC-------CCCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~-------~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV-V 130 (629)
++|++ +||.....=.++++..|...|+.... ...+-|++++=|-+ ..+ ..+.+.++.+|++|.+|| +
T Consensus 41 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~s--G~t-~~~~~~~~~ak~~g~~vi~I 115 (180)
T 1jeo_A 41 KKIFI--FGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGS--GRT-ESVLTVAKKAKNINNNIIAI 115 (180)
T ss_dssp SSEEE--ECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESS--SCC-HHHHHHHHHHHTTCSCEEEE
T ss_pred CEEEE--EeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCC--CCc-HHHHHHHHHHHHCCCcEEEE
Confidence 45555 57777777788888888888875432 12345777663433 222 346777888999998755 6
Q ss_pred ECcc
Q 006836 131 AGCV 134 (629)
Q Consensus 131 gGc~ 134 (629)
++-.
T Consensus 116 T~~~ 119 (180)
T 1jeo_A 116 VCEC 119 (180)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 6643
No 116
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Probab=23.24 E-value=6.2e+02 Score=25.97 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (629)
.+++++.++++.+.+.|++.|.+-..+ .+. ....+.++++.+.++ ....+++. .|-..-.+...++.+.+.
T Consensus 164 ~~~~~~~~~a~~~~~~Gf~~iKik~g~-----~~~-~~~~e~v~avr~a~g--~~~~l~vD-an~~~~~~~a~~~~~~l~ 234 (392)
T 1tzz_A 164 KGLSMLRGEMRGYLDRGYNVVKMKIGG-----API-EEDRMRIEAVLEEIG--KDAQLAVD-ANGRFNLETGIAYAKMLR 234 (392)
T ss_dssp -CHHHHHHHHHHHHTTTCSEEEEECSS-----SCH-HHHHHHHHHHHHHHT--TTCEEEEE-CTTCCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCC-----CCH-HHHHHHHHHHHHhcC--CCCeEEEE-CCCCCCHHHHHHHHHHHH
Confidence 468999999999999999988874321 111 123577888877664 45667776 333222233334444555
Q ss_pred CCCcccccccccCCCCHHHHHhhcC
Q 006836 301 HPCVYSFLHVPVQSGSDAVLSAMNR 325 (629)
Q Consensus 301 ~~~~~~~l~IGlESgsd~vLk~M~R 325 (629)
..+ ..++.=|+...+-+.++.+++
T Consensus 235 ~~~-i~~iEqP~~~~d~~~~~~l~~ 258 (392)
T 1tzz_A 235 DYP-LFWYEEVGDPLDYALQAALAE 258 (392)
T ss_dssp TSC-CSEEECCSCTTCHHHHHHHTT
T ss_pred HcC-CCeecCCCChhhHHHHHHHHh
Confidence 444 456776766656666666665
No 117
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.23 E-value=1.1e+02 Score=24.18 Aligned_cols=88 Identities=10% Similarity=0.078 Sum_probs=45.2
Q ss_pred ChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhC----CCC-EEEECcc
Q 006836 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----KKP-LVVAGCV 134 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~----~~~-VVVgGc~ 134 (629)
|....+.+...|...||++... ...+|+++++...- ... ..++++.+++. +.+ |++++..
T Consensus 10 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~-~~~---~~~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 10 EDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPP-DQS---CLLLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTT-CCT---HHHHHHHHHHTCCCSSCCCEEEESSC
T ss_pred CHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCC-CCC---HHHHHHHHHhccccCCCCEEEEeCCC
Confidence 4555677888888888876432 12579999965332 212 23445555443 344 4455543
Q ss_pred cCCChhhhcccccE-EEcCCCHHHHHHHHHH
Q 006836 135 PQGSRDLKELEGVS-IVGVQQIDRVVEVVEE 164 (629)
Q Consensus 135 a~~~~e~~~~~~d~-VvG~~e~~~l~ell~~ 164 (629)
... .......+. +.-+-....+...+..
T Consensus 86 -~~~-~~~~~g~~~~l~kp~~~~~l~~~l~~ 114 (119)
T 2j48_A 86 -PVD-PLLTAQASAILSKPLDPQLLLTTLQG 114 (119)
T ss_dssp -CSS-HHHHHHCSEECSSCSTTHHHHHHHHT
T ss_pred -Cch-hhhhcCHHHhccCCCCHHHHHHHHHH
Confidence 222 322233343 3333344555555543
No 118
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=22.73 E-value=5.1e+02 Score=26.53 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006836 220 SYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (629)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~-GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (629)
..++++++++++.+++. |++.|.+= ++.. +. ..-.+.++++.+.++ ....+++. .|-..-.+...++.+.
T Consensus 149 ~~~~~~~~~~a~~~~~~~G~~~~K~K---vg~~--~~-~~d~~~v~avR~~~g--~~~~l~vD-an~~~~~~~a~~~~~~ 219 (372)
T 3tj4_A 149 SFTLEDLLAGSARAVEEDGFTRLKIK---VGHD--DP-NIDIARLTAVRERVD--SAVRIAID-GNGKWDLPTCQRFCAA 219 (372)
T ss_dssp TSCHHHHHHHHHHHHHTTCCCEEEEE---CCCS--SH-HHHHHHHHHHHHHSC--TTCEEEEE-CTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCCCEEEEc---CCCC--CH-HHHHHHHHHHHHHcC--CCCcEEee-CCCCCCHHHHHHHHHH
Confidence 45799999999999999 99998873 2111 11 122567888888775 45677776 3433222322234444
Q ss_pred HhCCCcccccccccCCCCHHHHHhh
Q 006836 299 LRHPCVYSFLHVPVQSGSDAVLSAM 323 (629)
Q Consensus 299 ~~~~~~~~~l~IGlESgsd~vLk~M 323 (629)
+...+ ..++.=|+...+-+-++.+
T Consensus 220 l~~~~-i~~iEqP~~~~d~~~~~~l 243 (372)
T 3tj4_A 220 AKDLD-IYWFEEPLWYDDVTSHARL 243 (372)
T ss_dssp TTTSC-EEEEESCSCTTCHHHHHHH
T ss_pred HhhcC-CCEEECCCCchhHHHHHHH
Confidence 44333 4566666654444444443
No 119
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=22.52 E-value=2.5e+02 Score=23.01 Aligned_cols=96 Identities=9% Similarity=-0.008 Sum_probs=52.2
Q ss_pred ChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccc----cchHHHHHHHHHHHhhC--CCCEE-EEC
Q 006836 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVK----SPSQSAMDTLIAKCKSA--KKPLV-VAG 132 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~----~~ae~~~~~~ir~~k~~--~~~VV-VgG 132 (629)
|....+.+...|+..||++... ...+|+++++.-.-. ... ..++++++++. +.+|| +++
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~---g~~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 12 NKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNE---GLFWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp CHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CC---HHHHHHHHHHHCTTCCEEEEEE
T ss_pred CHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCcc---HHHHHHHHHhhCcCCCEEEEEC
Confidence 4556677888888888876432 235899999643210 111 23444555443 44555 554
Q ss_pred cccCCCh-hhhccccc-EEEcCCCHHHHHHHHHHHhcCC
Q 006836 133 CVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (629)
Q Consensus 133 c~a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~g~ 169 (629)
....... +......+ ++.-.-....+.+.|.....+.
T Consensus 89 ~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 89 YADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp GGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 3221111 12233444 4666667778888888777654
No 120
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=22.31 E-value=3.8e+02 Score=27.97 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=30.9
Q ss_pred ccccccCCCCH-HHHHhhcC-CCCHHHHHHHHHHHHHhCCCCEEEE-EEEEcCCCCCHHHHHH
Q 006836 307 FLHVPVQSGSD-AVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIAT-DIICGFPGETDEDFNQ 366 (629)
Q Consensus 307 ~l~IGlESgsd-~vLk~M~R-~~t~e~~~e~I~~lr~~~pgi~i~t-d~IvGfPGETeedf~e 366 (629)
.+++=+.++.+ .....|+| |.+.+++.++++.+++. ++.+.. .+=+|--..+.+.+.+
T Consensus 167 ~v~lrvd~g~~~~~~~~~~RfG~~~~e~~~~~~~~~~~--~l~l~Gl~~H~gs~~~~~~~~~~ 227 (419)
T 2plj_A 167 ELLVRLSFRNSEAFADLSKKFGCSPEQALVIIETAKEW--NIRIKGLSFHVGSQTTNPNKYVE 227 (419)
T ss_dssp EEEEEBCC---------CCCSCBCHHHHHHHHHHHHHT--TCEEEEEECCCCTTCCCTHHHHH
T ss_pred CEEEEEcCCCCCCCCCCCCCCcCCHHHHHHHHHHHHhC--CCcEEEEEEECCCCCCCHHHHHH
Confidence 34555555422 12344777 67899999999999886 877543 2224543333344333
No 121
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=22.23 E-value=1.4e+02 Score=30.62 Aligned_cols=80 Identities=11% Similarity=0.094 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEece--e----CCCCccccCCCCCH
Q 006836 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY--P----RPGTPAARMKKVPS 400 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~~ys--P----~PGTpa~~~~~v~~ 400 (629)
.+.+++...++.+.+..|++.+..|+=.|| | +.+++.+++..+.+.+..-+++=--. | .+|.+ -+|.
T Consensus 83 vt~~em~~~~~~I~r~~~~~PviaD~d~Gy-g-~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~-----L~p~ 155 (318)
T 1zlp_A 83 LTTTEVVEATRRITAAAPNLCVVVDGDTGG-G-GPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKA-----VVPA 155 (318)
T ss_dssp SCHHHHHHHHHHHHHHSSSSEEEEECTTCS-S-SHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCC-----BCCH
T ss_pred CCHHHHHHHHHHHHhhccCCCEEEeCCCCC-C-CHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCc-----cCCH
Confidence 689999999999999988999999999998 6 88999999999999999988874322 1 11222 2567
Q ss_pred HHHHHHHHHHHHH
Q 006836 401 AVVKKRSRELTSV 413 (629)
Q Consensus 401 ~~~~~R~~~L~~l 413 (629)
++..+|.+.+.+.
T Consensus 156 ~e~~~rI~Aa~~A 168 (318)
T 1zlp_A 156 EEHALKIAAAREA 168 (318)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666665555544
No 122
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}
Probab=22.08 E-value=2.9e+02 Score=28.71 Aligned_cols=100 Identities=10% Similarity=-0.007 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC---------C---cCCCHHHHHHHHHHhCCCCCCceEEEeecCCcch
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR---------D---IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~---------d---~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i 288 (629)
.+++++.++++.+.+.|++.+.+-......+|. + ......+.++++++.++ ....+++. .|-..-
T Consensus 151 ~~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~~e~v~avR~a~G--~d~~l~vD-an~~~~ 227 (407)
T 2o56_A 151 TEPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVG--PDVDIIAE-MHAFTD 227 (407)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHHHHHHHHHHHHHC--TTSEEEEE-CTTCSC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHHHHHHHHHHHhcC--CCCEEEEE-CCCCCC
Confidence 479999999999999999998874211011121 0 00123567777777664 45667776 333222
Q ss_pred hHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhc
Q 006836 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324 (629)
Q Consensus 289 ~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~ 324 (629)
.+...++.+.+...+ ..++.=|+...+-+.++.++
T Consensus 228 ~~~a~~~~~~l~~~~-i~~iE~P~~~~~~~~~~~l~ 262 (407)
T 2o56_A 228 TTSAIQFGRMIEELG-IFYYEEPVMPLNPAQMKQVA 262 (407)
T ss_dssp HHHHHHHHHHHGGGC-CSCEECSSCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCEEeCCCChhhHHHHHHHH
Confidence 222223444444433 34666666554444444443
No 123
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=22.03 E-value=4.2e+02 Score=25.10 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
|..++++.++-++.+.+.|++-|.+..-+ ..-.+.++.+.+.++
T Consensus 23 r~~~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~ 66 (214)
T 1wbh_A 23 VVKKLEHAVPMAKALVAGGVRVLNVTLRT---------ECAVDAIRAIAKEVP 66 (214)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEESCS---------TTHHHHHHHHHHHCT
T ss_pred ECCCHHHHHHHHHHHHHcCCCEEEEeCCC---------hhHHHHHHHHHHHCc
Confidence 45677888899999999999988887321 123678888877764
No 124
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=21.85 E-value=2.6e+02 Score=22.91 Aligned_cols=105 Identities=11% Similarity=0.150 Sum_probs=56.5
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeC-C-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhCC
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-N-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~-~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~ 125 (629)
+.+|.|+. -|....+.+...|+..||+++. . ...+|+++++...-.......+.+.+++. .+
T Consensus 9 ~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~--~~ 82 (140)
T 3cg0_A 9 LPGVLIVE----DGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG--CN 82 (140)
T ss_dssp CCEEEEEC----CBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH--SC
T ss_pred CceEEEEE----CCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC--CC
Confidence 45666653 3466678888889888998763 2 23589999964322111222233333433 45
Q ss_pred CCEE-EECcccCCCh-hhhccccc-EEEcCCCHHHHHHHHHHHhcC
Q 006836 126 KPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (629)
Q Consensus 126 ~~VV-VgGc~a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~g 168 (629)
.+|| +++....... .......+ ++.-.-....+...++....+
T Consensus 83 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 83 LPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp CCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 5555 4543221111 12233444 466666667777777765543
No 125
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=21.73 E-value=3.3e+02 Score=27.00 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 006836 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (629)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~ 382 (629)
|.++..++++.+.+...| +|+|.-+.+-++..+..+.+++.+.|.+-+.
T Consensus 50 s~eEr~~v~~~~~~~~~g------ViaGvg~~~t~~ai~la~~A~~~Gadavlv~ 98 (288)
T 2nuw_A 50 SKDEKRQNLNALYDVTHK------LIFQVGSLNLNDVMELVKFSNEMDILGVSSH 98 (288)
T ss_dssp CHHHHHHHHHHHTTTCSC------EEEECCCSCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CHHHHHHHHHHHHHHhCC------eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 678899999999988666 8999977788888888899999999976654
No 126
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=21.44 E-value=3.1e+02 Score=21.78 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=47.6
Q ss_pred ChhhHHHHHHHHHhcCceeeC---C---------CCCCCEEEEeecccccchHHHHHHHHHHHhh--CCCCEE-EECccc
Q 006836 71 NQSDSEYMAGQLSAFGYALTD---N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLV-VAGCVP 135 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~~~~---~---------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~--~~~~VV-VgGc~a 135 (629)
+....+.+...|...||+++. + ...+|+++++... -... ..+.++++++ ++.+|| +++...
T Consensus 11 ~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~~---g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (120)
T 1tmy_A 11 AAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITM-PEMN---GIDAIKEIMKIDPNAKIIVCSAMGQ 86 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSC-GGGC---HHHHHHHHHHHCTTCCEEEEECTTC
T ss_pred cHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCc---HHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 445567788888888988431 1 2357999996432 1111 2344555544 344554 555422
Q ss_pred CCCh-hhhccccc-EEEcCCCHHHHHHHHHHH
Q 006836 136 QGSR-DLKELEGV-SIVGVQQIDRVVEVVEET 165 (629)
Q Consensus 136 ~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~ 165 (629)
.... .......+ ++.-+-....+.+.++..
T Consensus 87 ~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 87 QAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp HHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 1111 11233344 466666666677666543
No 127
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=21.44 E-value=3.9e+02 Score=25.59 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 006836 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (629)
Q Consensus 219 Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~ 271 (629)
|..++++.++-++.+.+.|++-|.+..-+ ..-.++++.+.+.++
T Consensus 33 r~~~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~ 76 (225)
T 1mxs_A 33 TIAREEDILPLADALAAGGIRTLEVTLRS---------QHGLKAIQVLREQRP 76 (225)
T ss_dssp CCSCGGGHHHHHHHHHHTTCCEEEEESSS---------THHHHHHHHHHHHCT
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEecCC---------ccHHHHHHHHHHhCc
Confidence 34567788888999999999988887311 123567887877764
No 128
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=21.37 E-value=3.7e+02 Score=22.59 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=61.4
Q ss_pred CCCceEEEEecCcccChhhHHHHHHHHHhcC--ceeeC--C---------CCCCCEEEEeecccccchHHHHHHHHHHHh
Q 006836 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFG--YALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCK 122 (629)
Q Consensus 56 ~~~~~v~i~TlGC~~N~~dse~m~~~L~~~G--~~~~~--~---------~~~ADlviINTCtv~~~ae~~~~~~ir~~k 122 (629)
..|.+|.|+. -+....+.+...|...| +.+.. + ...+|+|+++...-.. ...+++++++
T Consensus 18 ~~m~~iLivd----d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~----~g~~~~~~l~ 89 (150)
T 4e7p_A 18 GSHMKVLVAE----DQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVK----TGLEVLEWIR 89 (150)
T ss_dssp --CEEEEEEC----SCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSS----CHHHHHHHHH
T ss_pred CCccEEEEEc----CCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCC----cHHHHHHHHH
Confidence 3467777764 34666778888888887 55422 1 4568999996533221 2345556665
Q ss_pred hCC--CCE-EEECcccCCCh-hhhccccc-EEEcCCCHHHHHHHHHHHhcCCc
Q 006836 123 SAK--KPL-VVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGHE 170 (629)
Q Consensus 123 ~~~--~~V-VVgGc~a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~~g~~ 170 (629)
+.. .+| ++++....... +.....++ ++.-.-....+.+.|.....+..
T Consensus 90 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 90 SEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp HTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred HhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 543 444 45543221111 12233444 56667677888888888777643
No 129
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=21.32 E-value=3.3e+02 Score=28.15 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHH
Q 006836 221 YTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~-GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~ 299 (629)
.++++++++++.+++. |++.+.+= ++.. +. ..-.+.++++++.++ ....+++. .|-..-.+...++.+.+
T Consensus 147 ~~~~~~~~~a~~~~~~~G~~~~K~K---vg~~--~~-~~d~~~v~avR~a~g--~~~~l~vD-an~~~~~~~A~~~~~~l 217 (383)
T 3i4k_A 147 LPLDVAVAEIEERIEEFGNRSFKLK---MGAG--DP-AEDTRRVAELAREVG--DRVSLRID-INARWDRRTALHYLPIL 217 (383)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEE---CCSS--CH-HHHHHHHHHHHHTTT--TTSEEEEE-CTTCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEEe---eCCC--CH-HHHHHHHHHHHHHcC--CCCEEEEE-CCCCCCHHHHHHHHHHH
Confidence 3689999999998887 99998873 2111 11 122567888888775 45677776 33322222222333344
Q ss_pred hCCCcccccccccCCCCHHHHHhh
Q 006836 300 RHPCVYSFLHVPVQSGSDAVLSAM 323 (629)
Q Consensus 300 ~~~~~~~~l~IGlESgsd~vLk~M 323 (629)
...+ ..+|.=|+...+.+-++.+
T Consensus 218 ~~~~-i~~iEqP~~~~d~~~~~~l 240 (383)
T 3i4k_A 218 AEAG-VELFEQPTPADDLETLREI 240 (383)
T ss_dssp HHTT-CCEEESCSCTTCHHHHHHH
T ss_pred HhcC-CCEEECCCChhhHHHHHHH
Confidence 3333 4567666655544444444
No 130
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=21.20 E-value=3.4e+02 Score=27.29 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 006836 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (629)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i~ 382 (629)
|.++..++++.+.+...+- .-+|+|.-+.+-++..+..+.+++++.|.+.+.
T Consensus 65 s~~Er~~v~~~~~~~~~gr---~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 116 (307)
T 3s5o_A 65 TSSERLEVVSRVRQAMPKN---RLLLAGSGCESTQATVEMTVSMAQVGADAAMVV 116 (307)
T ss_dssp CHHHHHHHHHHHHHTSCTT---SEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCC---CcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 6788999999999886552 246888877788888888899999999977764
No 131
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=21.17 E-value=2.5e+02 Score=27.00 Aligned_cols=51 Identities=6% Similarity=0.042 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC------CCC-------HHHHHHHHHHHHhcCCCeEEE
Q 006836 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFP------GET-------DEDFNQTVNLIKEYKFPQVHI 381 (629)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfP------GET-------eedf~eTl~fl~~l~~d~v~i 381 (629)
.+.++..+.-+.++++ |+.+.+ +.+++ +.+ .+.+++.++++.+++...+.+
T Consensus 44 ~~~~~~~~~~~~l~~~--gl~i~~--~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 107 (294)
T 3vni_A 44 YSDIQINELKACAHGN--GITLTV--GHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGG 107 (294)
T ss_dssp CCHHHHHHHHHHHHHT--TCEEEE--EECCCGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCHHHHHHHHHHHHHc--CCeEEE--eecCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeec
Confidence 3567778888888888 998876 33332 112 356788899999999987764
No 132
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=21.12 E-value=5.5e+02 Score=25.28 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 006836 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381 (629)
Q Consensus 329 ~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~~l~~d~v~i 381 (629)
.+.+.++.+.+.++ |+.+....+-++++.-..+..+..+++++++.+.+.+
T Consensus 163 ~~~l~~l~~~a~~~--Gv~l~lE~~~~~~~~~~~t~~~~~~ll~~v~~~~vgl 213 (335)
T 2qw5_A 163 QPILDKLGEYAEIK--KVKLAIEPITHWETPGPNKLSQLIEFLKGVKSKQVGV 213 (335)
T ss_dssp HHHHHHHHHHHHHH--TCEEEECCCCTTTCSSCCSHHHHHHHHTTCCCTTEEE
T ss_pred HHHHHHHHHHHHHc--CCEEEEeeCCcccccccCCHHHHHHHHHhcCCCCeeE
Confidence 34556666677777 8887766654444433345556667778777555554
No 133
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=21.12 E-value=3.6e+02 Score=22.73 Aligned_cols=101 Identities=11% Similarity=0.119 Sum_probs=55.0
Q ss_pred ceEEEEecCcccChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhhC--C
Q 006836 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--K 125 (629)
Q Consensus 59 ~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~ 125 (629)
.+|.|+. -|....+.+...|...||++... ...+|+|+++...-. .. ..++++++++. .
T Consensus 8 ~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~---g~~~~~~l~~~~~~ 79 (154)
T 2rjn_A 8 YTVMLVD----DEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPE-MG---GEVFLEQVAKSYPD 79 (154)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSS-SC---HHHHHHHHHHHCTT
T ss_pred CeEEEEc----CCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CC---HHHHHHHHHHhCCC
Confidence 4555543 34666788888999899886532 346899999753322 12 23444555443 3
Q ss_pred CCEE-EECcccCCCh-hhhccc-cc-EEEcCCCHHHHHHHHHHHhc
Q 006836 126 KPLV-VAGCVPQGSR-DLKELE-GV-SIVGVQQIDRVVEVVEETLK 167 (629)
Q Consensus 126 ~~VV-VgGc~a~~~~-e~~~~~-~d-~VvG~~e~~~l~ell~~~~~ 167 (629)
.+|| +++....... +..... .+ ++.-+-....+...+.....
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 80 IERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp SEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 4544 5543221111 111233 44 46666666777777766543
No 134
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}
Probab=21.11 E-value=2.5e+02 Score=29.32 Aligned_cols=90 Identities=9% Similarity=-0.015 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHCCCcEEEE--eecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcc-hhHHHHHHHHHHhC
Q 006836 225 SLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF-ILEHLKEIAEVLRH 301 (629)
Q Consensus 225 ~Iv~Ei~~l~~~GvkeI~L--~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~-i~~~l~el~~l~~~ 301 (629)
++.++++.+.+.|++.|.+ +|.. +.+. ..-.+.++++++.++ ....+++. .|-.. -.+...++.+.+..
T Consensus 155 ~~~~~a~~~~~~G~~~~K~~k~g~~----~~~~-~~d~~~v~avR~a~G--~d~~l~vD-an~~~~~~~~A~~~~~~L~~ 226 (394)
T 3mqt_A 155 AYKPLIAKAKERGAKAVKVCIIPND----KVSD-KEIVAYLRELREVIG--WDMDMMVD-CLYRWTDWQKARWTFRQLED 226 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCT----TSCH-HHHHHHHHHHHHHHC--SSSEEEEE-CTTCCSCHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHcCCCEEEecccCCC----ccCH-HHHHHHHHHHHHHhC--CCCeEEEE-CCCCCCCHHHHHHHHHHHhh
Confidence 4555788888899999988 2210 0111 123567788887765 45677776 34332 22222234444443
Q ss_pred CCcccccccccCCCCHHHHHhh
Q 006836 302 PCVYSFLHVPVQSGSDAVLSAM 323 (629)
Q Consensus 302 ~~~~~~l~IGlESgsd~vLk~M 323 (629)
.+ ..++.=|+...+-+.++.+
T Consensus 227 ~~-i~~iEeP~~~~~~~~~~~l 247 (394)
T 3mqt_A 227 ID-LYFIEACLQHDDLIGHQKL 247 (394)
T ss_dssp GC-CSEEESCSCTTCHHHHHHH
T ss_pred cC-CeEEECCCCcccHHHHHHH
Confidence 33 4566666654444444333
No 135
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=20.89 E-value=35 Score=21.53 Aligned_cols=12 Identities=42% Similarity=0.963 Sum_probs=10.1
Q ss_pred chhhHHHHhhhc
Q 006836 557 QNVIGWLLRKRK 568 (629)
Q Consensus 557 ~~~~~~~~~~~~ 568 (629)
+.+|.|+-|||+
T Consensus 14 P~liSWiK~kr~ 25 (26)
T 3qrx_B 14 PALISWIKRKRQ 25 (26)
T ss_pred hHHHHHHHHHhc
Confidence 578999999885
No 136
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.79 E-value=2.7e+02 Score=24.98 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=44.3
Q ss_pred EEecCcccChhhHHHHHHHHHhcCceeeCC-------------CCCCCEEEEeecccccchHHHHHHHHHHHhhCCCCEE
Q 006836 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (629)
Q Consensus 63 i~TlGC~~N~~dse~m~~~L~~~G~~~~~~-------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV 129 (629)
|.-+||.....-.++++..|...|..+... ..+-|++++=| ....+ ..+.+.++.+|++|.+||
T Consensus 42 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS--~sG~t-~~~~~~~~~ak~~g~~vi 118 (187)
T 3sho_A 42 VIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVS--VWRYL-RDTVAALAGAAERGVPTM 118 (187)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEEC--CSSCC-HHHHHHHHHHHHTTCCEE
T ss_pred EEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEe--CCCCC-HHHHHHHHHHHHCCCCEE
Confidence 445667677788888999998888764321 23457766633 33323 346777888999998765
Q ss_pred -EECc
Q 006836 130 -VAGC 133 (629)
Q Consensus 130 -VgGc 133 (629)
+++-
T Consensus 119 ~IT~~ 123 (187)
T 3sho_A 119 ALTDS 123 (187)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 5654
No 137
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.76 E-value=3.5e+02 Score=22.19 Aligned_cols=101 Identities=9% Similarity=-0.010 Sum_probs=56.0
Q ss_pred CceEEEEecCcccChhhHHHHHHHHHhcCceeeCC-----------CCCCCEEEEeecccccchHHHHHHHHHHHhh--C
Q 006836 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--A 124 (629)
Q Consensus 58 ~~~v~i~TlGC~~N~~dse~m~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~--~ 124 (629)
+.+|.|+. -|....+.+...|...||++... ...+|+++++.-.- ... ..++++++++ .
T Consensus 7 ~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~---g~~~~~~l~~~~~ 78 (142)
T 3cg4_A 7 KGDVMIVD----DDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMP-GMD---GWDTIRAILDNSL 78 (142)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCS-SSC---HHHHHHHHHHTTC
T ss_pred CCeEEEEc----CCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCC-CCC---HHHHHHHHHhhcc
Confidence 44565553 35667788899999999986432 34689999964322 111 2455666655 3
Q ss_pred C--CCEE-EECcccCCCh-hhhccccc-EEEcCCCHHHHHHHHHHHh
Q 006836 125 K--KPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETL 166 (629)
Q Consensus 125 ~--~~VV-VgGc~a~~~~-e~~~~~~d-~VvG~~e~~~l~ell~~~~ 166 (629)
. .+|| +++....... .......+ ++.-.-....+...+....
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 79 EQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp CTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 2 3444 5554322111 22233344 4555656667777666543
No 138
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=20.74 E-value=72 Score=27.74 Aligned_cols=82 Identities=11% Similarity=0.087 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCceeeC---C---------CCCCCEEEEeecccccchHHHHHHHHHHHhhCCCC-EEEECcccCCChhhh
Q 006836 76 EYMAGQLSAFGYALTD---N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-LVVAGCVPQGSRDLK 142 (629)
Q Consensus 76 e~m~~~L~~~G~~~~~---~---------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~-VVVgGc~a~~~~e~~ 142 (629)
+.+...|++.||+++. + ...+|++++.-.. |.. .-.++++++|+++.+ |+++|..-... ..
T Consensus 22 ~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllDi~m---P~~-~G~el~~~lr~~~ipvI~lTa~~~~~~--~~ 95 (123)
T 2lpm_A 22 MLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDVNL---DGE-PSYPVADILAERNVPFIFATGYGSKGL--DT 95 (123)
T ss_dssp HHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEECSSS---SSC-CSHHHHHHHHHTCCSSCCBCTTCTTSC--CS
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEecCC---CCC-CHHHHHHHHHcCCCCEEEEecCccHHH--HH
Confidence 4556666666766532 1 3468999995332 211 123456666677765 55677421111 11
Q ss_pred ccc-ccEEEcCCCHHHHHHHHH
Q 006836 143 ELE-GVSIVGVQQIDRVVEVVE 163 (629)
Q Consensus 143 ~~~-~d~VvG~~e~~~l~ell~ 163 (629)
+.. .+++.-+-....+.+.|.
T Consensus 96 ~~g~~~yl~KP~~~~~L~~~l~ 117 (123)
T 2lpm_A 96 RYSNIPLLTKPFLDSELEAVLV 117 (123)
T ss_dssp SSCSCSCBCSSSSHHHHHHHHS
T ss_pred hCCCCcEEECCCCHHHHHHHHH
Confidence 222 234555555555555443
No 139
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=20.71 E-value=9.6e+02 Score=27.23 Aligned_cols=137 Identities=11% Similarity=-0.033 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHC--CCcEEEEeecCCCC----CCCCcCCCHHHHHHHHHHhCCCCCCceEEE--------eec-CC
Q 006836 221 YTVESLVGRVRTVIAD--GVKEVWLSSEDTGA----YGRDIGVNLPILLNAIVAELPPDGSTMLRI--------GMT-NP 285 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~--GvkeI~L~g~d~~~----yg~d~~~~l~eLL~~L~~~i~~~~~~~iri--------~~~-~p 285 (629)
.+.++.++-++.|.+. |+.+|-..|...+. |.. .+-.+.++.+.+.++ .. .+.. +|. .|
T Consensus 122 ~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~---e~p~e~l~~l~~~~~--~~-~l~~l~R~~n~vgy~~~p 195 (718)
T 3bg3_A 122 VRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLY---ECPWRRLQELRELIP--NI-PFQMLLRGANAVGYTNYP 195 (718)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSC---CCHHHHHHHHHHHCS--SS-CEEEEECGGGTTSSSCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCC---CCHHHHHHHHHHHcc--cc-hHHHHhcccccccccccC
Confidence 6899999999999886 68778876543311 111 233567777777665 22 2211 111 23
Q ss_pred cchhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc----CCCC--
Q 006836 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG----FPGE-- 359 (629)
Q Consensus 286 ~~i~~~l~el~~l~~~~~~~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvG----fPGE-- 359 (629)
..+.+. .+......+ ...+++-. |.+ ..+.+...++.+++. |..+..++.+. -|.+
T Consensus 196 ~~~~~~--~i~~a~~~G--vd~irIf~-s~n-----------~l~~l~~~i~~ak~~--G~~v~~~i~~~~d~~dp~r~~ 257 (718)
T 3bg3_A 196 DNVVFK--FCEVAKENG--MDVFRVFD-SLN-----------YLPNMLLGMEAAGSA--GGVVEAAISYTGDVADPSRTK 257 (718)
T ss_dssp HHHHHH--HHHHHHHHT--CCEEEEEC-SSC-----------CHHHHHHHHHHHHTT--TSEEEEEEECCSCTTCTTCCT
T ss_pred CcchHH--HHHHHHhcC--cCEEEEEe-cHH-----------HHHHHHHHHHHHHHc--CCeEEEEEEeeccccCCCCCC
Confidence 322221 122222222 33444332 222 256788888999988 88887777665 2332
Q ss_pred -CHHHHHHHHHHHHhcCCCeEEE
Q 006836 360 -TDEDFNQTVNLIKEYKFPQVHI 381 (629)
Q Consensus 360 -Teedf~eTl~fl~~l~~d~v~i 381 (629)
+.+.+.+.++.+.+.+.+.+.+
T Consensus 258 ~~~e~~~~~a~~l~~~Ga~~I~l 280 (718)
T 3bg3_A 258 YSLQYYMGLAEELVRAGTHILCI 280 (718)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Confidence 6777888888888999887665
No 140
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.65 E-value=3.6e+02 Score=22.29 Aligned_cols=92 Identities=9% Similarity=0.092 Sum_probs=52.4
Q ss_pred ChhhHHHHHHHHHhcCce--eeC-----------CCCCCCEEEEeecccccchHHHHHHHHHHHhh----CCCCEE-EEC
Q 006836 71 NQSDSEYMAGQLSAFGYA--LTD-----------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKS----AKKPLV-VAG 132 (629)
Q Consensus 71 N~~dse~m~~~L~~~G~~--~~~-----------~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~----~~~~VV-VgG 132 (629)
+....+.+...|...||. +.. ....+|+|+++.-.- . ....++++++++ .+.+|| +++
T Consensus 14 ~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~-~---~~g~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 14 NPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLP-I---ANGFEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCG-G---GCHHHHHHHHHSSSTTTTCCEEEEET
T ss_pred CHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCC-C---CCHHHHHHHHHhcccccCCCEEEEeC
Confidence 466778888999999986 322 145689999964321 1 123556666665 234554 555
Q ss_pred cccCCCh-hhhccccc-EEEcCC-CHHHHHHHHHHHh
Q 006836 133 CVPQGSR-DLKELEGV-SIVGVQ-QIDRVVEVVEETL 166 (629)
Q Consensus 133 c~a~~~~-e~~~~~~d-~VvG~~-e~~~l~ell~~~~ 166 (629)
....... +.....++ ++.-.- ....+.+.|+...
T Consensus 90 ~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 90 NVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp TCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 3222111 12233444 466666 6777777776654
No 141
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=20.58 E-value=3.4e+02 Score=29.12 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---CC---CHHHHHHHHHHhCCCC-CCceEEEeecCCc
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GV---NLPILLNAIVAELPPD-GSTMLRIGMTNPP 286 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~---~~---~l~eLL~~L~~~i~~~-~~~~iri~~~~p~ 286 (629)
.+.+.+++.++.+++.|+.-|-+-++-+- -|.+. .. ++..+++.+.+..+.. ....+.+.+.+|.
T Consensus 209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTr-PGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~~~ 280 (442)
T 3mcm_A 209 FDDNQRKLNLDELIQSGAEIIDIGAESTK-PDAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTRKLE 280 (442)
T ss_dssp SCCCHHHHHHHHHHHHTCSEEEEECCCCC-C----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEECCCHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCCHH
Confidence 57889999999999999998887664332 22211 11 2333466665421100 1356778766664
No 142
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=20.39 E-value=6.2e+02 Score=24.87 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=42.2
Q ss_pred EEEEEeCCCCCCCCCCCccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 006836 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (629)
Q Consensus 193 ~a~V~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i 270 (629)
.++|...-||++. . ..+++.+++-++.+.+.|+..|.|.+ + .|.-.+....++++.+.+.+
T Consensus 137 ~~~l~~~~~~e~~------------~-~~~~~~~~~~~~~~~~~G~d~i~l~D--t--~G~~~P~~~~~lv~~l~~~~ 197 (295)
T 1ydn_A 137 RGYVSCVVECPYD------------G-PVTPQAVASVTEQLFSLGCHEVSLGD--T--IGRGTPDTVAAMLDAVLAIA 197 (295)
T ss_dssp EEEEECSSEETTT------------E-ECCHHHHHHHHHHHHHHTCSEEEEEE--T--TSCCCHHHHHHHHHHHHTTS
T ss_pred EEEEEEEecCCcC------------C-CCCHHHHHHHHHHHHhcCCCEEEecC--C--CCCcCHHHHHHHHHHHHHhC
Confidence 4456666677653 1 24789999999999999999999985 2 23222345677888887655
No 143
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}
Probab=20.38 E-value=2.8e+02 Score=29.11 Aligned_cols=101 Identities=12% Similarity=0.138 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEe-ecC-CCCCCCCc----CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLS-SED-TGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~-g~d-~~~yg~d~----~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~e 294 (629)
.+++++.++++.+++.|++.|.+= +.+ ....|... ...-.+.++++++.++ ....+++. .|-..-.+...+
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G--~d~~l~vD-aN~~~~~~~A~~ 219 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVG--SKADLLFG-THGQMVPSSAIR 219 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHT--TSSEEEEC-CCSCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHHhC--CCCeEEEE-CCCCCCHHHHHH
Confidence 579999999999999999999882 211 00001000 0123567777777765 45677775 333322233223
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhhcC
Q 006836 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325 (629)
Q Consensus 295 l~~l~~~~~~~~~l~IGlESgsd~vLk~M~R 325 (629)
+.+.+...+ ..++.=|+...+-+.++.+++
T Consensus 220 ~~~~L~~~~-i~~iEeP~~~~d~~~~~~l~~ 249 (412)
T 4e4u_A 220 LAKRLEKYD-PLWFEEPVPPGQEEAIAQVAK 249 (412)
T ss_dssp HHHHHGGGC-CSEEECCSCSSCHHHHHHHHH
T ss_pred HHHHhhhcC-CcEEECCCChhhHHHHHHHHh
Confidence 444444433 457777776666666655544
No 144
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=20.14 E-value=6.1e+02 Score=26.46 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=33.5
Q ss_pred HhhcC-CCCHHHHHHHHHHHHHhCCCCEEEE-EEEEcCCCCCHHHHHHHH-------HHHHhcC--CCeEEEE
Q 006836 321 SAMNR-EYTLSDFRTVVDTLIELVPGMQIAT-DIICGFPGETDEDFNQTV-------NLIKEYK--FPQVHIS 382 (629)
Q Consensus 321 k~M~R-~~t~e~~~e~I~~lr~~~pgi~i~t-d~IvGfPGETeedf~eTl-------~fl~~l~--~d~v~i~ 382 (629)
..|+| |.+.++..++++.+++. ++.+.. ++=+|---.+.+.+.+.+ +.+++++ +..+++.
T Consensus 165 ~~~skfG~~~~~~~~~~~~~~~~--~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~~~~G~~~~~ldiG 235 (424)
T 7odc_A 165 RLSVKFGATLKTSRLLLERAKEL--NIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIG 235 (424)
T ss_dssp ----CCCBCHHHHHHHHHHHHHT--TCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC--CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeC
Confidence 34666 67899999999999885 876432 333453223445554443 3344444 4566653
No 145
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1
Probab=20.12 E-value=5.1e+02 Score=26.44 Aligned_cols=99 Identities=12% Similarity=-0.007 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC-cCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHH
Q 006836 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (629)
Q Consensus 221 r~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d-~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~ 299 (629)
.+++++.++++.+.+.|++.|.+-... ..|+.. ......+.++++.+.++ ....+++. .|-..-.+...++.+.+
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~~~~~~~~e~v~avr~a~g--~d~~l~vD-an~~~~~~~a~~~~~~l 223 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWM-PPVSWAPDVKMDLKACAAVREAVG--PDIRLMID-AFHWYSRTDALALGRGL 223 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCC-TTSTTCCCHHHHHHHHHHHHHHHC--TTSEEEEE-CCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCc-CccccccchHHHHHHHHHHHHHhC--CCCeEEEE-CCCCCCHHHHHHHHHHH
Confidence 478999999999999999988875321 111100 00123567777777664 45667776 33222223333344455
Q ss_pred hCCCcccccccccCCCCHHHHHhhc
Q 006836 300 RHPCVYSFLHVPVQSGSDAVLSAMN 324 (629)
Q Consensus 300 ~~~~~~~~l~IGlESgsd~vLk~M~ 324 (629)
...+ ..++.=|+...+-+.++.++
T Consensus 224 ~~~~-i~~iE~P~~~~~~~~~~~l~ 247 (382)
T 1rvk_A 224 EKLG-FDWIEEPMDEQSLSSYKWLS 247 (382)
T ss_dssp HTTT-CSEEECCSCTTCHHHHHHHH
T ss_pred HhcC-CCEEeCCCChhhHHHHHHHH
Confidence 5444 45666666554444444443
No 146
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=20.10 E-value=1.9e+02 Score=29.82 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=41.1
Q ss_pred cCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCC-CCCCc--------CCCHHHHHHHHHHhCC
Q 006836 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGA-YGRDI--------GVNLPILLNAIVAELP 271 (629)
Q Consensus 211 ip~~rG~~Rsr~~e~Iv~Ei~~l~~~GvkeI~L~g~d~~~-yg~d~--------~~~l~eLL~~L~~~i~ 271 (629)
++..-|-+| ++++.+++|++.+++.|++.|.|.|.-... . +|. ..-+.+-++.|++.++
T Consensus 57 I~SMPGv~r-~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~~-KD~~gs~A~~~~g~v~rair~iK~~~p 124 (342)
T 1h7n_A 57 IDSLPNINR-IGVNRLKDYLKPLVAKGLRSVILFGVPLIPGT-KDPVGTAADDPAGPVIQGIKFIREYFP 124 (342)
T ss_dssp CTTSTTCEE-ECHHHHHHHHHHHHHTTCCEEEEEEECCSTTC-CBTTCGGGGCTTSHHHHHHHHHHHHCT
T ss_pred CCCCCCcee-eCHHHHHHHHHHHHHCCCCEEEEecccCccCC-CCccccccCCCCChHHHHHHHHHHHCC
Confidence 445555554 689999999999999999999998862110 1 111 1235677888888776
No 147
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=20.07 E-value=2.2e+02 Score=26.96 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCc
Q 006836 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (629)
Q Consensus 225 ~Iv~Ei~~l~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~L~~~i~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (629)
+.++.++.+.+.|+..|.+.+.|-...+. ..+ ++++++.+... ..-+.-+.++. .+. +..++..+
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~~---ipv~v~ggi~~---~~~---~~~~l~~G-- 96 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRG---SNH-ELLAEVVGKLD---VQVELSGGIRD---DES---LAAALATG-- 96 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSC---CCH-HHHHHHHHHCS---SEEEEESSCCS---HHH---HHHHHHTT--
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCC---ChH-HHHHHHHHhcC---CcEEEECCCCC---HHH---HHHHHHcC--
Confidence 45556667778899999998654332222 345 88899987642 22222222321 122 33333332
Q ss_pred ccccccccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE----------cCCCCCHHHHHHHHHHHHhc
Q 006836 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC----------GFPGETDEDFNQTVNLIKEY 374 (629)
Q Consensus 305 ~~~l~IGlESgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~Iv----------GfPGETeedf~eTl~fl~~l 374 (629)
+..+++|.+...+ .+.+.+.++.+.. .+.+..|.-+ |...++. +..+.++.+.+.
T Consensus 97 ad~V~lg~~~l~~-----------p~~~~~~~~~~g~---~~~~~ld~~~~~~~~~v~~~g~~~~~~-~~~e~~~~~~~~ 161 (244)
T 2y88_A 97 CARVNVGTAALEN-----------PQWCARVIGEHGD---QVAVGLDVQIIDGEHRLRGRGWETDGG-DLWDVLERLDSE 161 (244)
T ss_dssp CSEEEECHHHHHC-----------HHHHHHHHHHHGG---GEEEEEEEEEETTEEEEEEGGGTEEEE-EHHHHHHHHHHT
T ss_pred CCEEEECchHhhC-----------hHHHHHHHHHcCC---CEEEEEeccccCCCCEEEECCccCCCC-CHHHHHHHHHhC
Confidence 6677777654221 2334444444321 2334444331 3322223 556667777888
Q ss_pred CCCeEEEEece
Q 006836 375 KFPQVHISQFY 385 (629)
Q Consensus 375 ~~d~v~i~~ys 385 (629)
+++.+.++.-.
T Consensus 162 G~~~i~~~~~~ 172 (244)
T 2y88_A 162 GCSRFVVTDIT 172 (244)
T ss_dssp TCCCEEEEETT
T ss_pred CCCEEEEEecC
Confidence 99888776544
Done!