BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006838
(629 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W1Q|A Chain A, Unique Ligand Binding Specificity For A Family 32
Carbohydrate-Binding Module From The Mu Toxin Produced
By Clostridium Perfringens
pdb|2W1Q|B Chain B, Unique Ligand Binding Specificity For A Family 32
Carbohydrate-Binding Module From The Mu Toxin Produced
By Clostridium Perfringens
pdb|2W1U|A Chain A, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,3)galnac
pdb|2W1U|B Chain B, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,3)galnac
pdb|2W1U|C Chain C, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,3)galnac
pdb|2W1U|D Chain D, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,3)galnac
pdb|2WDB|A Chain A, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,2)mannose
pdb|2WDB|B Chain B, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,2)mannose
pdb|2WDB|C Chain C, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,2)mannose
pdb|2WDB|D Chain D, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,2)mannose
Length = 192
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 243 SNILGKDHN-----KYLRNPCSVAGKFVVIELGEETLVDTVKIA---NFEHYSSNFKEFE 294
+N+L D N K L S+AG+F+ ++LG+E +D ++ N S + +F+
Sbjct: 41 ANLLDGDDNTGVWYKTLNGDTSLAGEFIGLDLGKEIKLDGIRFVIGKNGGGSSDKWNKFK 100
Query: 295 LSGSLSYPTEVWSPLGKFVATNV---KQLQSFKLPEPKWVRYLKL 336
L SL E W+ + ++ T K + P +Y++L
Sbjct: 101 LEYSLD--NESWTTIKEYDKTGAPAGKDVIEESFETPISAKYIRL 143
>pdb|2W1S|A Chain A, Unique Ligand Binding Specificity Of A Family 32
Carbohydrate-Binding Module From The Mu Toxin Produced
By Clostridium Perfringens
pdb|2W1S|B Chain B, Unique Ligand Binding Specificity Of A Family 32
Carbohydrate-Binding Module From The Mu Toxin Produced
By Clostridium Perfringens
Length = 192
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 243 SNILGKDHN-----KYLRNPCSVAGKFVVIELGEETLVDTVKIA---NFEHYSSNFKEFE 294
+N+L D N K L S+AG+F+ ++LG+E +D ++ N S + +F+
Sbjct: 41 ANLLDGDDNTGVWYKTLNGDTSLAGEFIGLDLGKEIKLDGIRFVIGKNGGGSSDKWNKFK 100
Query: 295 LSGSLSYPTEVWSPLGKFVATNV---KQLQSFKLPEPKWVRYLKL 336
L SL E W+ + ++ T K + P +Y++L
Sbjct: 101 LEYSLD--NESWTTIKEYDKTGAPAGKDVIEESFETPISAKYIRL 143
>pdb|1WPP|A Chain A, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
pdb|1WPP|B Chain B, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
Length = 311
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 233 VAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKE 292
V + +A+GA ++ DHN++ ++ +A E+ +VD ++ANFE S +
Sbjct: 61 VITSAKAEGAEQVILTDHNEFQQSVADIA------EVEVYGVVDHHRVANFETASPLYMR 114
Query: 293 FELSGSLS 300
E GS S
Sbjct: 115 LEPVGSAS 122
>pdb|3HMB|A Chain A, Mutant Endolysin From Bacillus Subtilis
pdb|3HMB|B Chain B, Mutant Endolysin From Bacillus Subtilis
pdb|3HMB|C Chain C, Mutant Endolysin From Bacillus Subtilis
Length = 157
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 205 SQLVNITHRFDPDGTEYNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNP 257
S +VNI +F P G AMK + HN A A H +YL+NP
Sbjct: 2 SHMVNIIQKFIPVGANNRPGYAMKPKYITVHNT-ANTAVGADAAAHARYLKNP 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,157,757
Number of Sequences: 62578
Number of extensions: 682520
Number of successful extensions: 1463
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1459
Number of HSP's gapped (non-prelim): 10
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)