BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006838
(629 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O59729|SLPI_SCHPO Uncharacterized protein slp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=slp1 PE=3 SV=1
Length = 659
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 98/149 (65%), Gaps = 3/149 (2%)
Query: 221 YNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKI 280
+N+AS A ++ N EA G+S+IL ++ +KY+ N CS KFVVIEL E+ VDTV+I
Sbjct: 193 FNFASTDCAAAVIKTNPEAVGSSSILTENKDKYMLNKCSAENKFVVIELCEDIYVDTVQI 252
Query: 281 ANFEHYSSNFKEFELSGSLSYPT--EVWSPLGKFVATNVKQLQSFKLPEP-KWVRYLKLN 337
ANFE +SS F++F++S S YP W LG F A N++ LQSF + P W +YLK+
Sbjct: 253 ANFEFFSSIFRDFKVSVSGKYPKYESSWMELGTFTALNLRTLQSFHIENPLIWAKYLKIE 312
Query: 338 LLSHYGSEFYCTLSVVEVYGVDAIERMLE 366
L+HYGSEFYC +S++ VYG IE E
Sbjct: 313 FLTHYGSEFYCPVSLLRVYGKTMIEEFEE 341
>sp|Q12232|SLP1_YEAST Uncharacterized protein SLP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SLP1 PE=1 SV=1
Length = 587
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 154/302 (50%), Gaps = 45/302 (14%)
Query: 221 YNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKI 280
+NYAS A +V N EA GA++ L + +KYL NPCS +F+VIEL E+ LV+ ++I
Sbjct: 189 FNYASLDCAATIVKSNPEAIGATSTLIESKDKYLLNPCSAPQQFIVIELCEDILVEEIEI 248
Query: 281 ANFEHYSSNFKEFELSGSLSYPT--EVWSPLGKFVATNVKQLQSFKLPEPK-WVRYLKLN 337
AN+E +SS FK F +S S P W+ LG+F A N ++LQ F++ P+ W YLK+
Sbjct: 249 ANYEFFSSTFKRFRVSVSDRIPMVKNEWTILGEFEARNSRELQKFQIHNPQIWASYLKIE 308
Query: 338 LLSHYGSEFYCTLSVVEVYGVDAIERMLEDLFVASE-----------------------G 374
+LSHY EFYC +S+++VYG ++ D A E
Sbjct: 309 ILSHYEDEFYCPISLIKVYGKSMMDEFKIDQLKAQEDKEQSIGTNNINNLNEQNIQDRCN 368
Query: 375 SVPNKLPEPNSSTMPSSEPEVGSSDCNKSSKVQNGVKTDNIQVENIENAQLFNENVANPL 434
++ +L PN+S + G+ C +SK+ I ++ E ++ N A+
Sbjct: 369 NIETRLETPNTSNLSDL---AGALSC--TSKL--------IPLKFDEFFKVLN---ASFC 412
Query: 435 PRAKIPDPVVEVRQHPIGRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPE 494
P ++ + + IP +++ + +M+++ LE N S+ YI+E ++ F +
Sbjct: 413 PSKQM---ISSSSSSAVPVIPEESIFKNIMKRLSQLETNSSLTVSYIEEQSKLLSKSFEQ 469
Query: 495 LD 496
L+
Sbjct: 470 LE 471
>sp|Q54MI3|SUN2_DICDI SUN domain-containing protein 2 OS=Dictyostelium discoideum GN=sun2
PE=3 SV=1
Length = 1278
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 96/153 (62%), Gaps = 7/153 (4%)
Query: 216 PDGTEYNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLV 275
PD ++NYAS+ GA ++ NKEA S+IL ++YL N C+ + FVV EL EE V
Sbjct: 517 PD--KFNYASSECGANVLQTNKEAWEVSSILASSRDRYLLNECNKSQWFVV-ELCEEIGV 573
Query: 276 DTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLK 335
+++ANFE +SS FK+F + GS YP + W LG+F A N ++ Q F L E W +YLK
Sbjct: 574 QIIELANFEFFSSMFKDFIVLGSNRYPAQSWHYLGQFTAENSRKQQYFVLKEKAWYKYLK 633
Query: 336 LNLLSHYGSEFYCTLSVVEVYGVDAIERMLEDL 368
+ +LSHYG + YC +S +VYG M++DL
Sbjct: 634 VKILSHYGDQLYCPISSFKVYG----STMVDDL 662
>sp|Q9UBS9|SUCO_HUMAN SUN domain-containing ossification factor OS=Homo sapiens GN=SUCO
PE=1 SV=1
Length = 1254
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 90/152 (59%), Gaps = 8/152 (5%)
Query: 222 NYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIA 281
NYAS GAK++A N EAK S IL ++ + Y+ NPCS FV IEL E V + IA
Sbjct: 309 NYASVECGAKILAANPEAKSTSAILIENMDLYMLNPCSTKIWFV-IELCEPIQVKQLDIA 367
Query: 282 NFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKW-------VRYL 334
N+E +SS K+F +S S YPT W LG F + + +QSF L E + ++Y+
Sbjct: 368 NYELFSSTPKDFLVSISDRYPTNKWIKLGTFHGRDERNVQSFPLDEQMYAKYVKMFIKYI 427
Query: 335 KLNLLSHYGSEFYCTLSVVEVYGVDAIERMLE 366
K+ LLSH+GSE +C LS++ V+G +E E
Sbjct: 428 KVELLSHFGSEHFCPLSLIRVFGTSMVEEYEE 459
>sp|Q8C341|SUCO_MOUSE SUN domain-containing ossification factor OS=Mus musculus GN=Suco
PE=1 SV=3
Length = 1250
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 89/152 (58%), Gaps = 8/152 (5%)
Query: 222 NYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIA 281
NYAS GAK++A N EAK S IL ++ + Y+ NPCS FV IEL E V IA
Sbjct: 308 NYASVECGAKILAANPEAKSTSAILIENMDLYMLNPCSTKIWFV-IELCEPIQVKQFDIA 366
Query: 282 NFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKW-------VRYL 334
N+E +SS K+F +S S YPT W LG F + + +QSF L E + ++Y+
Sbjct: 367 NYELFSSTPKDFLVSISDRYPTNKWIKLGTFHGRDERNVQSFPLDEQMYAKYVKMFIKYI 426
Query: 335 KLNLLSHYGSEFYCTLSVVEVYGVDAIERMLE 366
K+ LLSH+GSE +C LS++ V+G +E E
Sbjct: 427 KVELLSHFGSEHFCPLSLIRVFGTSMVEEYEE 458
>sp|Q710E6|SUCO_RAT SUN domain-containing ossification factor OS=Rattus norvegicus
GN=Suco PE=2 SV=1
Length = 1253
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 89/152 (58%), Gaps = 8/152 (5%)
Query: 222 NYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIA 281
NYAS GAK++A N EAK S IL ++ + Y+ NPCS FV IEL E V IA
Sbjct: 309 NYASVECGAKILAANPEAKSTSAILIENMDLYMLNPCSTKIWFV-IELCEPIQVKQFDIA 367
Query: 282 NFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKW-------VRYL 334
N+E +SS K+F +S S YPT W LG F + + +QSF L E + ++Y+
Sbjct: 368 NYELFSSTPKDFLVSISDRYPTNKWIKLGTFHGRDERTVQSFPLDEQMYAKYVKMFIKYI 427
Query: 335 KLNLLSHYGSEFYCTLSVVEVYGVDAIERMLE 366
K+ LLSH+GSE +C LS++ V+G +E E
Sbjct: 428 KVELLSHFGSEHFCPLSLIRVFGTSMVEEYEE 459
>sp|Q7VEG5|SYA_PROMA Alanine--tRNA ligase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=alaS PE=3 SV=1
Length = 892
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 467 VKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERG 526
V+ E + +++ +L +R+Q +F EL RE TR LEK + L EL+ ++ G
Sbjct: 333 VQIAEVAIELMQSAYPQLLERRQLIFKELQREETRFLETLEKGEKLLAELLSKAPSVITG 392
Query: 527 LSDLESWKTV-VSFRVNELIKENSMLRIDVE--KVSSDQANLESKELAV 572
+ E + T + E I E + LR+D++ K + D+ +K A+
Sbjct: 393 EAAFELYDTYGFPVELTEEIAEENDLRVDMKGFKKAMDEQRRRAKSAAM 441
>sp|B2SFD4|RL10_FRATM 50S ribosomal protein L10 OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=rplJ PE=3 SV=1
Length = 172
Score = 34.3 bits (77), Expect = 3.1, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 186 LNFDEFRNITRQEKGWGVPSQLV-NITHRFDPDGTEYN-YASAMKGAKLVAHNKEAKGAS 243
L +E ++ +Q + GV ++V N R GTE+ A A+KG ++A +K+A GA+
Sbjct: 33 LTVNEMTSLRKQARESGVYLRVVRNNLARLAIKGTEFECLADALKGPLVLALSKDAPGAA 92
Query: 244 NIL----GKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFE 284
L KDHN + +++G+ G E L D K+ E
Sbjct: 93 AKLFKNFQKDHNAFEVKNLAMSGEL----FGPEKLDDFAKLPTRE 133
>sp|C0MAS4|MUTL_STRE4 DNA mismatch repair protein MutL OS=Streptococcus equi subsp. equi
(strain 4047) GN=mutL PE=3 SV=1
Length = 660
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 21/96 (21%)
Query: 401 NKSSKVQNGVKTDNIQVENIENAQLFNENVANPLPRAKIPDPVVEVRQHPIGRIPGDTVL 460
N + V +GVK QV+N++ A+ +E A + A PDP++ +HP
Sbjct: 387 NHETLVDSGVK----QVDNLQLAKTESEAAAPSVKYASRPDPMLSDGEHP---------- 432
Query: 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELD 496
+ + + L Q L LE+ +Q VFPELD
Sbjct: 433 GLDVHNKQKLSQMLDRLEN-------EEQSVFPELD 461
>sp|P39083|RGA1_YEAST Rho-type GTPase-activating protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RGA1 PE=1 SV=1
Length = 1007
Score = 33.1 bits (74), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLR 552
P LD+EI L++ K+ L+EL RE + + +++++S K + + E + L
Sbjct: 599 PSLDKEIVTAEHYLKQLKINLKELESQREELMKEITEMKSMKEALRRHIESYNSEKNKLY 658
Query: 553 IDVEKVSSD 561
+D ++S++
Sbjct: 659 LDSNELSNN 667
>sp|Q86SQ0|PHLB2_HUMAN Pleckstrin homology-like domain family B member 2 OS=Homo sapiens
GN=PHLDB2 PE=1 SV=2
Length = 1253
Score = 32.7 bits (73), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 473 NLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETME---RGLSD 529
NL L+ IK++N + + F ELD E +LL + K E EL+K +E ++ R +++
Sbjct: 600 NLEELKQKIKDINDQMDESFRELDME---CALLDGEQKSETTELMKEKEILDHLNRKIAE 656
Query: 530 LESWKTVVSFRVNELIK 546
LE K +V + E +K
Sbjct: 657 LE--KNIVGEKTKEKVK 671
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,578,731
Number of Sequences: 539616
Number of extensions: 9851984
Number of successful extensions: 33820
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 222
Number of HSP's that attempted gapping in prelim test: 33296
Number of HSP's gapped (non-prelim): 731
length of query: 629
length of database: 191,569,459
effective HSP length: 124
effective length of query: 505
effective length of database: 124,657,075
effective search space: 62951822875
effective search space used: 62951822875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)