Query 006838
Match_columns 629
No_of_seqs 149 out of 219
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 15:13:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1396 Uncharacterized conser 100.0 5.7E-67 1.2E-71 556.6 16.9 405 208-626 113-529 (530)
2 PF07738 Sad1_UNC: Sad1 / UNC- 100.0 8.8E-32 1.9E-36 243.6 12.2 124 235-358 1-134 (135)
3 KOG2687 Spindle pole body prot 99.8 1.6E-18 3.5E-23 184.2 13.6 141 215-359 237-410 (414)
4 cd00057 FA58C Substituted upda 98.7 4.9E-07 1.1E-11 80.5 12.9 111 240-357 24-143 (143)
5 PF00754 F5_F8_type_C: F5/8 ty 98.2 3E-05 6.4E-10 66.5 12.4 109 241-351 16-127 (129)
6 PF06588 Muskelin_N: Muskelin 97.8 6.7E-05 1.5E-09 74.8 7.4 121 238-360 17-149 (199)
7 KOG2437 Muskelin [Signal trans 97.3 0.00063 1.4E-08 75.9 7.4 123 238-362 20-151 (723)
8 cd08366 APC10 APC10 subunit of 97.0 0.011 2.3E-07 56.2 12.0 118 237-357 15-139 (139)
9 cd08667 APC10-ZZEF1 APC10/DOC1 96.8 0.015 3.3E-07 55.0 11.6 115 241-357 15-131 (131)
10 cd08159 APC10-like APC10-like 96.6 0.04 8.6E-07 52.0 12.1 114 241-356 15-129 (129)
11 PF03256 APC10: Anaphase-promo 96.3 0.046 1E-06 54.5 11.6 122 235-359 40-168 (193)
12 cd08665 APC10-CUL7 APC10-like 95.9 0.07 1.5E-06 50.6 10.2 120 236-357 10-131 (131)
13 smart00231 FA58C Coagulation f 95.7 0.13 2.8E-06 46.9 10.6 88 262-357 44-138 (139)
14 PF03904 DUF334: Domain of unk 95.4 0.44 9.6E-06 49.1 14.5 44 451-494 25-72 (230)
15 PRK10884 SH3 domain-containing 94.6 0.41 8.8E-06 48.4 11.4 43 538-580 145-188 (206)
16 PF03561 Allantoicase: Allanto 94.6 0.55 1.2E-05 45.5 11.9 123 229-357 1-152 (152)
17 cd08365 APC10-like1 APC10-like 94.4 0.5 1.1E-05 44.9 11.0 110 241-355 16-130 (131)
18 cd08666 APC10-HECTD3 APC10-lik 94.1 0.83 1.8E-05 43.7 11.7 119 233-355 12-133 (134)
19 TIGR02961 allantoicase allanto 94.0 0.76 1.6E-05 49.5 12.5 130 219-358 171-322 (322)
20 PRK13257 allantoicase; Provisi 93.3 0.91 2E-05 49.2 11.7 131 221-358 184-333 (336)
21 PF14652 DUF4457: Domain of un 93.2 0.38 8.2E-06 51.3 8.7 99 261-359 81-216 (329)
22 PF07889 DUF1664: Protein of u 92.8 1 2.2E-05 42.7 10.0 82 485-569 38-119 (126)
23 PF04156 IncA: IncA protein; 92.8 2.2 4.7E-05 41.2 12.5 93 460-563 83-175 (191)
24 PRK13257 allantoicase; Provisi 92.7 1.7 3.6E-05 47.3 12.7 135 220-360 17-173 (336)
25 PHA02562 46 endonuclease subun 92.2 2.7 5.9E-05 46.4 13.9 105 457-562 298-402 (562)
26 PF01544 CorA: CorA-like Mg2+ 91.6 4.7 0.0001 40.1 13.7 23 579-601 237-259 (292)
27 PF04111 APG6: Autophagy prote 91.3 1.5 3.2E-05 46.7 10.3 74 458-531 9-84 (314)
28 TIGR00383 corA magnesium Mg(2+ 91.1 11 0.00024 38.9 16.2 93 532-626 216-309 (318)
29 TIGR02961 allantoicase allanto 91.1 3.6 7.8E-05 44.5 12.9 135 221-361 3-162 (322)
30 COG0598 CorA Mg2+ and Co2+ tra 90.9 17 0.00038 38.3 17.6 167 459-625 119-312 (322)
31 PRK13797 putative bifunctional 90.8 2.5 5.4E-05 48.3 12.0 131 220-360 184-334 (516)
32 PRK09546 zntB zinc transporter 90.2 17 0.00038 38.1 17.0 45 582-626 270-315 (324)
33 KOG4276 Predicted hormone rece 90.1 2.6 5.6E-05 39.1 9.3 95 262-358 7-111 (113)
34 smart00607 FTP eel-Fucolectin 89.6 6.2 0.00013 38.1 12.1 115 242-359 26-148 (151)
35 PF10473 CENP-F_leu_zip: Leuci 89.5 9.7 0.00021 36.8 13.1 91 465-566 10-100 (140)
36 PF10267 Tmemb_cc2: Predicted 89.5 40 0.00086 37.7 21.0 39 454-492 208-246 (395)
37 PHA02562 46 endonuclease subun 89.3 5.1 0.00011 44.3 12.8 98 461-565 184-281 (562)
38 PF00038 Filament: Intermediat 89.1 7.7 0.00017 40.0 13.2 28 460-487 13-40 (312)
39 PRK13797 putative bifunctional 88.8 4.4 9.5E-05 46.3 11.9 135 220-360 10-174 (516)
40 cd08664 APC10-HERC2 APC10-like 88.6 4 8.8E-05 40.0 10.0 111 239-355 37-151 (152)
41 KOG1396 Uncharacterized conser 87.9 0.22 4.8E-06 56.1 1.1 165 457-625 272-462 (530)
42 KOG2662 Magnesium transporters 86.2 28 0.0006 39.1 15.7 68 457-524 186-254 (414)
43 PF08317 Spc7: Spc7 kinetochor 86.2 13 0.00028 39.5 13.0 32 457-488 148-179 (325)
44 cd07912 Tweety_N N-terminal do 85.6 12 0.00027 41.7 12.9 33 554-586 193-229 (418)
45 PF05700 BCAS2: Breast carcino 85.1 16 0.00035 37.0 12.6 93 472-568 121-218 (221)
46 COG3206 GumC Uncharacterized p 84.9 25 0.00054 38.8 14.9 104 463-569 286-403 (458)
47 TIGR02169 SMC_prok_A chromosom 84.6 16 0.00034 43.6 14.1 29 460-488 676-704 (1164)
48 PF03904 DUF334: Domain of unk 84.5 26 0.00057 36.6 13.7 125 460-597 52-179 (230)
49 PRK04863 mukB cell division pr 84.3 18 0.00038 46.3 14.8 29 458-486 314-342 (1486)
50 smart00787 Spc7 Spc7 kinetocho 84.2 20 0.00044 38.5 13.4 29 457-485 143-171 (312)
51 PF12128 DUF3584: Protein of u 84.1 15 0.00032 45.7 14.0 109 458-569 274-382 (1201)
52 KOG0804 Cytoplasmic Zn-finger 83.9 11 0.00025 42.6 11.6 61 498-561 383-443 (493)
53 KOG3437 Anaphase-promoting com 83.9 14 0.00031 37.3 11.2 118 239-359 36-159 (184)
54 PF05701 WEMBL: Weak chloropla 82.4 26 0.00057 39.8 14.1 107 465-572 211-335 (522)
55 KOG0971 Microtubule-associated 82.2 17 0.00036 44.4 12.7 108 460-567 334-476 (1243)
56 PF07888 CALCOCO1: Calcium bin 81.9 16 0.00034 42.3 12.1 47 277-323 6-56 (546)
57 PF07106 TBPIP: Tat binding pr 81.0 6.7 0.00015 37.7 7.7 26 476-501 5-32 (169)
58 PF06201 PITH: PITH domain; I 80.9 17 0.00037 35.1 10.3 110 244-358 25-151 (152)
59 PF14662 CCDC155: Coiled-coil 80.7 46 0.001 34.0 13.5 106 463-568 6-131 (193)
60 COG1561 Uncharacterized stress 80.6 16 0.00034 39.3 10.8 112 455-566 151-290 (290)
61 PF12325 TMF_TATA_bd: TATA ele 80.3 53 0.0012 31.0 13.2 54 452-509 10-63 (120)
62 PF08317 Spc7: Spc7 kinetochor 80.3 22 0.00048 37.9 11.9 52 476-531 146-197 (325)
63 PF05911 DUF869: Plant protein 80.3 23 0.0005 42.5 13.1 94 458-562 71-164 (769)
64 PRK09841 cryptic autophosphory 80.2 31 0.00066 40.6 14.0 36 462-497 308-343 (726)
65 PRK03918 chromosome segregatio 79.6 37 0.00079 40.0 14.4 60 462-522 166-225 (880)
66 TIGR02168 SMC_prok_B chromosom 79.6 35 0.00075 40.6 14.3 21 464-484 301-321 (1179)
67 PF07889 DUF1664: Protein of u 79.1 30 0.00065 33.0 11.1 87 468-568 39-125 (126)
68 PF10473 CENP-F_leu_zip: Leuci 78.7 62 0.0014 31.4 13.3 66 462-527 21-89 (140)
69 COG1196 Smc Chromosome segrega 78.7 29 0.00062 43.0 13.7 78 492-569 844-921 (1163)
70 PRK02224 chromosome segregatio 78.6 37 0.00081 40.1 14.2 14 357-370 110-123 (880)
71 PF04582 Reo_sigmaC: Reovirus 78.4 1.6 3.5E-05 47.2 2.8 107 454-562 26-135 (326)
72 TIGR01005 eps_transp_fam exopo 78.4 50 0.0011 38.6 15.0 95 465-562 288-399 (754)
73 KOG1853 LIS1-interacting prote 77.9 49 0.0011 35.5 13.2 97 459-555 60-156 (333)
74 smart00502 BBC B-Box C-termina 77.9 46 0.001 28.9 15.7 95 458-562 7-102 (127)
75 KOG1029 Endocytic adaptor prot 77.8 84 0.0018 38.3 16.2 136 457-593 430-598 (1118)
76 PRK11637 AmiB activator; Provi 77.7 29 0.00064 38.0 12.2 67 493-559 187-253 (428)
77 COG1196 Smc Chromosome segrega 77.3 36 0.00078 42.2 14.0 48 482-529 375-422 (1163)
78 PF15188 CCDC-167: Coiled-coil 76.9 21 0.00045 32.2 8.8 47 519-584 37-83 (85)
79 TIGR03007 pepcterm_ChnLen poly 76.9 59 0.0013 35.9 14.3 52 510-561 323-377 (498)
80 PF02183 HALZ: Homeobox associ 76.9 5.8 0.00013 31.5 4.8 41 522-562 2-42 (45)
81 KOG0250 DNA repair protein RAD 76.3 27 0.00059 43.2 12.3 21 179-199 51-71 (1074)
82 TIGR03185 DNA_S_dndD DNA sulfu 76.2 67 0.0015 37.3 15.1 68 460-527 393-465 (650)
83 PF13851 GAS: Growth-arrest sp 76.2 39 0.00086 34.0 11.7 80 489-568 47-129 (201)
84 PF00957 Synaptobrevin: Synapt 76.1 51 0.0011 28.4 11.1 59 509-578 19-77 (89)
85 TIGR00606 rad50 rad50. This fa 75.9 38 0.00082 42.5 13.8 76 492-567 824-916 (1311)
86 PRK11637 AmiB activator; Provi 75.7 76 0.0016 34.9 14.7 87 480-566 160-246 (428)
87 PRK11519 tyrosine kinase; Prov 75.6 57 0.0012 38.4 14.5 36 462-497 308-343 (719)
88 PF05478 Prominin: Prominin; 75.3 85 0.0018 37.7 15.9 32 569-600 410-441 (806)
89 KOG1853 LIS1-interacting prote 75.2 16 0.00035 39.0 8.8 89 479-567 16-119 (333)
90 PRK03918 chromosome segregatio 74.9 63 0.0014 38.1 14.6 59 459-518 170-228 (880)
91 PF07798 DUF1640: Protein of u 73.9 93 0.002 30.5 17.2 37 462-499 31-67 (177)
92 COG1579 Zn-ribbon protein, pos 73.8 45 0.00097 35.0 11.6 16 549-564 106-121 (239)
93 PRK11085 magnesium/nickel/coba 73.7 1.4E+02 0.003 32.3 18.4 23 578-600 258-280 (316)
94 PF10146 zf-C4H2: Zinc finger- 73.5 1.1E+02 0.0023 31.9 14.3 84 463-561 20-103 (230)
95 PF06156 DUF972: Protein of un 73.2 15 0.00033 33.9 7.3 18 543-560 40-57 (107)
96 PF13851 GAS: Growth-arrest sp 72.5 43 0.00093 33.7 10.9 84 484-567 3-90 (201)
97 PF07926 TPR_MLP1_2: TPR/MLP1/ 72.3 86 0.0019 29.3 13.8 100 457-559 9-118 (132)
98 PRK11820 hypothetical protein; 72.2 36 0.00078 36.3 10.8 108 455-566 149-288 (288)
99 PF08006 DUF1700: Protein of u 71.9 53 0.0011 31.8 11.1 12 478-489 4-15 (181)
100 PF10168 Nup88: Nuclear pore c 71.7 85 0.0018 37.5 14.6 43 242-284 242-284 (717)
101 COG1579 Zn-ribbon protein, pos 71.5 96 0.0021 32.6 13.4 30 498-527 97-126 (239)
102 PF05377 FlaC_arch: Flagella a 70.8 11 0.00025 31.4 5.3 38 492-529 2-39 (55)
103 PRK00846 hypothetical protein; 70.4 21 0.00045 31.6 7.1 52 462-517 10-61 (77)
104 PF09304 Cortex-I_coil: Cortex 70.4 47 0.001 31.2 9.7 64 493-556 12-75 (107)
105 KOG0243 Kinesin-like protein [ 70.3 86 0.0019 39.1 14.5 59 460-518 443-511 (1041)
106 KOG4673 Transcription factor T 70.3 70 0.0015 38.5 13.1 114 457-570 487-629 (961)
107 PF04102 SlyX: SlyX; InterPro 70.3 18 0.00038 30.7 6.5 51 463-517 2-52 (69)
108 PF14712 Snapin_Pallidin: Snap 70.2 72 0.0016 27.6 11.2 68 493-566 24-91 (92)
109 PF15397 DUF4618: Domain of un 70.0 54 0.0012 34.8 11.4 100 477-576 14-121 (258)
110 PF08614 ATG16: Autophagy prot 70.0 61 0.0013 32.0 11.2 80 462-555 99-181 (194)
111 PF12325 TMF_TATA_bd: TATA ele 69.5 44 0.00096 31.5 9.6 36 492-527 18-53 (120)
112 PF12709 Kinetocho_Slk19: Cent 69.3 54 0.0012 29.8 9.6 68 501-570 12-82 (87)
113 PF01544 CorA: CorA-like Mg2+ 69.2 94 0.002 31.0 12.5 32 475-506 110-141 (292)
114 TIGR00634 recN DNA repair prot 69.1 30 0.00066 39.4 10.1 67 492-562 303-369 (563)
115 TIGR03017 EpsF chain length de 69.0 1.6E+02 0.0034 32.1 15.0 97 456-562 252-365 (444)
116 PF05911 DUF869: Plant protein 68.8 80 0.0017 38.2 13.6 102 457-562 588-689 (769)
117 PRK10884 SH3 domain-containing 68.8 54 0.0012 33.4 10.7 54 538-593 138-191 (206)
118 TIGR00255 conserved hypothetic 68.5 29 0.00062 37.1 9.1 112 455-566 151-291 (291)
119 PRK13169 DNA replication intia 68.5 22 0.00048 33.2 7.3 47 491-558 9-55 (110)
120 smart00787 Spc7 Spc7 kinetocho 68.4 1.6E+02 0.0035 31.9 14.7 59 466-524 138-199 (312)
121 PF11026 DUF2721: Protein of u 68.1 93 0.002 29.2 11.5 23 571-593 67-89 (130)
122 PRK15422 septal ring assembly 68.0 55 0.0012 29.3 9.2 55 501-562 12-69 (79)
123 TIGR02808 short_TIGR02808 cons 68.0 2.9 6.2E-05 33.0 1.2 16 144-159 2-17 (42)
124 cd00632 Prefoldin_beta Prefold 67.9 68 0.0015 28.7 10.1 49 504-559 55-104 (105)
125 COG3074 Uncharacterized protei 67.8 59 0.0013 28.8 9.2 43 510-559 24-66 (79)
126 PF11166 DUF2951: Protein of u 67.7 37 0.0008 31.4 8.3 28 539-566 46-73 (98)
127 PF05266 DUF724: Protein of un 67.3 1.5E+02 0.0032 30.0 13.4 33 535-567 148-180 (190)
128 PF09574 DUF2374: Protein of 66.7 3.2 6.9E-05 32.8 1.3 16 144-159 2-17 (42)
129 PF11166 DUF2951: Protein of u 66.5 84 0.0018 29.1 10.3 68 464-535 10-77 (98)
130 PF10498 IFT57: Intra-flagella 66.2 1.3E+02 0.0029 33.1 13.8 95 460-561 222-316 (359)
131 PRK02793 phi X174 lysis protei 66.1 28 0.00061 29.9 7.0 50 463-516 6-55 (72)
132 TIGR03752 conj_TIGR03752 integ 65.5 42 0.00091 38.4 10.0 29 450-479 52-80 (472)
133 PF09728 Taxilin: Myosin-like 65.2 70 0.0015 34.3 11.3 85 479-566 212-299 (309)
134 PRK01156 chromosome segregatio 65.1 1E+02 0.0022 36.8 13.7 13 467-479 596-608 (895)
135 KOG4674 Uncharacterized conser 64.8 82 0.0018 41.4 13.3 107 461-567 776-893 (1822)
136 TIGR03007 pepcterm_ChnLen poly 64.7 64 0.0014 35.7 11.2 71 457-527 160-234 (498)
137 PRK04406 hypothetical protein; 64.2 36 0.00079 29.6 7.4 51 462-516 8-58 (75)
138 PRK09039 hypothetical protein; 64.1 1.3E+02 0.0029 32.6 13.2 46 463-508 44-92 (343)
139 TIGR00606 rad50 rad50. This fa 63.8 1.3E+02 0.0029 37.9 14.9 63 497-559 977-1041(1311)
140 PF03961 DUF342: Protein of un 63.6 27 0.00058 38.7 8.1 26 462-487 331-356 (451)
141 PF04012 PspA_IM30: PspA/IM30 63.6 1.6E+02 0.0035 29.3 12.8 38 535-572 101-138 (221)
142 PRK02119 hypothetical protein; 63.6 39 0.00084 29.2 7.4 51 462-516 6-56 (73)
143 PF08647 BRE1: BRE1 E3 ubiquit 63.5 79 0.0017 28.3 9.6 76 492-567 5-80 (96)
144 PRK04325 hypothetical protein; 63.3 39 0.00086 29.2 7.4 50 463-516 7-56 (74)
145 PF04111 APG6: Autophagy prote 63.3 1.2E+02 0.0027 32.5 12.7 29 541-569 108-136 (314)
146 PF05791 Bacillus_HBL: Bacillu 63.2 74 0.0016 31.5 10.3 54 509-562 126-179 (184)
147 KOG4460 Nuclear pore complex, 63.0 64 0.0014 37.9 10.9 48 471-518 558-606 (741)
148 PF12777 MT: Microtubule-bindi 63.0 52 0.0011 35.3 9.9 85 498-582 236-320 (344)
149 TIGR01000 bacteriocin_acc bact 62.8 1.1E+02 0.0024 33.9 12.6 41 486-526 161-201 (457)
150 PF10186 Atg14: UV radiation r 62.6 65 0.0014 32.5 10.1 6 593-598 154-159 (302)
151 cd07643 I-BAR_IMD_MIM Inverse 62.6 2.1E+02 0.0045 30.2 13.6 110 458-577 71-196 (231)
152 PF00261 Tropomyosin: Tropomyo 62.2 1.9E+02 0.0041 29.5 14.2 55 463-517 90-147 (237)
153 PF15397 DUF4618: Domain of un 61.9 1.5E+02 0.0032 31.6 12.7 36 460-495 22-57 (258)
154 PRK10869 recombination and rep 61.9 51 0.0011 37.9 10.1 66 493-562 299-364 (553)
155 TIGR01010 BexC_CtrB_KpsE polys 61.8 1.3E+02 0.0029 32.0 12.7 87 463-559 212-298 (362)
156 PF05478 Prominin: Prominin; 61.5 2.1E+02 0.0047 34.4 15.5 20 608-627 411-430 (806)
157 PF10226 DUF2216: Uncharacteri 61.4 1.1E+02 0.0023 31.6 11.0 54 462-516 20-77 (195)
158 PF10779 XhlA: Haemolysin XhlA 61.3 71 0.0015 27.0 8.5 54 493-567 2-55 (71)
159 PF00038 Filament: Intermediat 61.2 2.1E+02 0.0045 29.7 16.7 67 475-541 180-246 (312)
160 PRK00736 hypothetical protein; 60.9 48 0.001 28.3 7.4 50 463-516 3-52 (68)
161 PRK00295 hypothetical protein; 60.8 49 0.0011 28.2 7.4 50 463-516 3-52 (68)
162 cd07666 BAR_SNX7 The Bin/Amphi 60.6 2.1E+02 0.0045 30.1 13.4 57 457-513 53-126 (243)
163 PRK04778 septation ring format 60.4 1.3E+02 0.0029 34.6 13.0 15 471-485 309-323 (569)
164 PF10046 BLOC1_2: Biogenesis o 60.1 1E+02 0.0023 27.7 9.8 29 460-488 30-58 (99)
165 PF10211 Ax_dynein_light: Axon 60.1 1.9E+02 0.0042 28.9 13.3 65 493-557 123-188 (189)
166 PRK09841 cryptic autophosphory 60.0 76 0.0017 37.4 11.4 106 457-562 266-393 (726)
167 PF10805 DUF2730: Protein of u 59.7 24 0.00051 32.2 5.7 32 535-566 52-85 (106)
168 PF09755 DUF2046: Uncharacteri 59.7 1.2E+02 0.0027 33.1 11.8 33 535-567 138-170 (310)
169 PF00261 Tropomyosin: Tropomyo 59.5 1.7E+02 0.0037 29.8 12.5 46 460-509 115-160 (237)
170 PF06005 DUF904: Protein of un 59.4 1E+02 0.0023 26.7 9.2 28 493-520 7-34 (72)
171 TIGR02338 gimC_beta prefoldin, 59.3 87 0.0019 28.4 9.3 82 461-555 20-104 (110)
172 PRK04778 septation ring format 58.6 1.1E+02 0.0024 35.2 12.0 103 461-563 313-428 (569)
173 PF05565 Sipho_Gp157: Siphovir 58.6 1.1E+02 0.0023 29.8 10.3 78 463-543 13-90 (162)
174 TIGR03185 DNA_S_dndD DNA sulfu 58.5 3.6E+02 0.0077 31.5 17.3 71 492-562 400-472 (650)
175 PF04582 Reo_sigmaC: Reovirus 58.4 15 0.00033 39.9 5.0 104 461-568 52-155 (326)
176 PF04420 CHD5: CHD5-like prote 58.3 12 0.00027 36.2 3.9 56 506-570 49-104 (161)
177 PF11068 YlqD: YlqD protein; 58.3 1.1E+02 0.0024 29.3 10.2 70 476-545 13-87 (131)
178 PF04899 MbeD_MobD: MbeD/MobD 58.3 43 0.00094 29.0 6.7 29 538-566 34-62 (70)
179 PF02994 Transposase_22: L1 tr 58.2 15 0.00033 40.0 5.0 39 529-567 148-186 (370)
180 PF05761 5_nucleotid: 5' nucle 58.1 20 0.00044 40.3 6.0 76 489-573 321-396 (448)
181 PF10168 Nup88: Nuclear pore c 58.0 61 0.0013 38.7 10.1 76 454-529 532-618 (717)
182 PF04849 HAP1_N: HAP1 N-termin 57.9 2E+02 0.0043 31.5 13.0 111 457-572 65-200 (306)
183 PRK04863 mukB cell division pr 57.8 1.5E+02 0.0032 38.5 13.9 24 465-488 300-323 (1486)
184 TIGR02977 phageshock_pspA phag 57.1 2.1E+02 0.0045 29.0 12.5 108 458-568 2-128 (219)
185 KOG0964 Structural maintenance 57.0 1.2E+02 0.0026 37.8 12.2 109 457-565 190-298 (1200)
186 PF04012 PspA_IM30: PspA/IM30 56.8 2.1E+02 0.0046 28.4 12.6 71 499-569 71-142 (221)
187 TIGR01000 bacteriocin_acc bact 56.8 2.1E+02 0.0046 31.7 13.5 32 532-563 284-315 (457)
188 KOG4433 Tweety transmembrane/c 56.4 1.7E+02 0.0037 34.0 12.7 73 464-536 119-191 (526)
189 KOG0811 SNARE protein PEP12/VA 56.3 2.8E+02 0.0061 29.7 13.9 57 490-556 180-236 (269)
190 KOG0982 Centrosomal protein Nu 56.1 1.9E+02 0.004 33.3 12.7 92 461-552 288-387 (502)
191 PF03908 Sec20: Sec20; InterP 55.8 1.4E+02 0.0031 26.2 10.4 19 565-583 67-85 (92)
192 KOG3156 Uncharacterized membra 55.7 2.2E+02 0.0048 29.8 12.4 90 465-564 49-141 (220)
193 KOG1962 B-cell receptor-associ 55.3 1.2E+02 0.0026 31.6 10.5 23 537-559 184-206 (216)
194 PF06008 Laminin_I: Laminin Do 54.9 98 0.0021 31.9 9.9 39 527-565 194-232 (264)
195 PF05278 PEARLI-4: Arabidopsis 54.9 3E+02 0.0066 29.6 14.4 28 543-570 218-245 (269)
196 PF08581 Tup_N: Tup N-terminal 54.8 72 0.0016 28.2 7.7 57 502-565 2-58 (79)
197 PF11559 ADIP: Afadin- and alp 54.7 1.9E+02 0.0041 27.3 12.4 17 493-509 83-99 (151)
198 PF05531 NPV_P10: Nucleopolyhe 54.5 84 0.0018 27.8 7.9 62 454-517 1-62 (75)
199 PF05008 V-SNARE: Vesicle tran 54.1 1.3E+02 0.0029 25.2 10.1 56 501-556 22-78 (79)
200 KOG4674 Uncharacterized conser 54.0 1.6E+02 0.0034 39.0 13.2 106 457-565 1263-1372(1822)
201 PF06156 DUF972: Protein of un 53.8 48 0.001 30.7 6.8 30 538-567 28-57 (107)
202 cd07667 BAR_SNX30 The Bin/Amph 53.8 2.9E+02 0.0063 29.1 13.8 76 493-568 103-189 (240)
203 COG4026 Uncharacterized protei 53.8 91 0.002 33.0 9.4 35 493-527 145-179 (290)
204 PRK11519 tyrosine kinase; Prov 53.6 1.3E+02 0.0029 35.4 11.9 33 457-489 266-298 (719)
205 KOG0996 Structural maintenance 53.4 2.3E+02 0.005 36.1 13.9 13 360-373 252-264 (1293)
206 KOG1962 B-cell receptor-associ 53.4 85 0.0018 32.6 9.1 57 493-556 154-210 (216)
207 PRK09039 hypothetical protein; 53.2 3.4E+02 0.0073 29.6 14.3 11 587-597 241-251 (343)
208 PF13747 DUF4164: Domain of un 53.0 1.3E+02 0.0028 27.0 9.1 61 457-520 7-69 (89)
209 TIGR01843 type_I_hlyD type I s 52.9 3.1E+02 0.0066 29.1 14.2 22 464-485 143-164 (423)
210 KOG0933 Structural maintenance 52.8 1.7E+02 0.0036 36.8 12.5 55 512-566 886-940 (1174)
211 TIGR01843 type_I_hlyD type I s 52.6 1.9E+02 0.0041 30.6 11.9 32 488-519 142-173 (423)
212 KOG0804 Cytoplasmic Zn-finger 52.1 3.8E+02 0.0083 31.0 14.4 85 468-555 328-412 (493)
213 PF04156 IncA: IncA protein; 52.0 2.3E+02 0.005 27.4 13.5 61 457-517 87-150 (191)
214 COG1382 GimC Prefoldin, chaper 52.0 1.9E+02 0.0042 27.6 10.5 28 538-565 83-110 (119)
215 PF15186 TEX13: Testis-express 52.0 2.3E+02 0.005 28.2 11.3 80 475-558 70-150 (152)
216 COG2433 Uncharacterized conser 51.9 93 0.002 36.8 10.0 28 458-485 422-449 (652)
217 PF04791 LMBR1: LMBR1-like mem 51.7 2.8E+02 0.006 30.6 13.3 39 489-527 223-261 (471)
218 PF07439 DUF1515: Protein of u 51.4 1.1E+02 0.0024 29.0 8.7 34 534-567 35-68 (112)
219 TIGR02231 conserved hypothetic 51.0 98 0.0021 34.9 10.0 17 459-475 72-88 (525)
220 KOG0859 Synaptobrevin/VAMP-lik 51.0 1.3E+02 0.0029 31.3 9.8 45 540-585 161-205 (217)
221 PF02181 FH2: Formin Homology 50.9 1E+02 0.0022 32.8 9.6 98 455-562 239-339 (370)
222 COG5185 HEC1 Protein involved 50.8 1.1E+02 0.0023 35.6 10.0 17 608-624 448-464 (622)
223 PF05667 DUF812: Protein of un 50.5 2E+02 0.0043 33.9 12.4 39 457-495 327-365 (594)
224 KOG1850 Myosin-like coiled-coi 50.5 1.9E+02 0.0042 32.1 11.4 72 457-538 203-274 (391)
225 KOG2391 Vacuolar sorting prote 50.4 1.5E+02 0.0031 33.1 10.6 79 472-567 207-285 (365)
226 PF06320 GCN5L1: GCN5-like pro 50.2 2.3E+02 0.0049 26.8 12.3 30 514-543 74-103 (121)
227 PF03954 Lectin_N: Hepatic lec 50.1 2.3E+02 0.0051 27.8 10.9 102 453-564 19-130 (138)
228 PF10186 Atg14: UV radiation r 50.0 2.9E+02 0.0063 27.9 14.9 12 546-557 126-137 (302)
229 KOG0978 E3 ubiquitin ligase in 49.9 3E+02 0.0064 33.3 13.8 39 523-561 564-602 (698)
230 PF09730 BicD: Microtubule-ass 49.8 1.7E+02 0.0036 35.3 11.9 70 462-531 31-103 (717)
231 KOG3202 SNARE protein TLG1/Syn 49.5 2.9E+02 0.0064 29.0 12.3 36 475-510 129-165 (235)
232 PF05377 FlaC_arch: Flagella a 49.5 39 0.00085 28.3 4.9 29 535-563 10-38 (55)
233 PF02403 Seryl_tRNA_N: Seryl-t 48.7 89 0.0019 27.7 7.5 85 478-568 12-96 (108)
234 PF05266 DUF724: Protein of un 48.7 3E+02 0.0066 27.8 13.4 17 457-473 68-84 (190)
235 KOG0994 Extracellular matrix g 48.7 1.9E+02 0.0041 37.0 12.1 88 498-593 1226-1313(1758)
236 PF15450 DUF4631: Domain of un 48.5 2.9E+02 0.0062 32.4 13.0 39 457-495 336-374 (531)
237 COG2433 Uncharacterized conser 48.4 2.1E+02 0.0046 34.1 12.1 30 485-514 438-467 (652)
238 PF07989 Microtub_assoc: Micro 48.4 96 0.0021 27.1 7.4 62 492-566 2-63 (75)
239 KOG4343 bZIP transcription fac 48.3 87 0.0019 36.7 8.9 44 542-585 319-373 (655)
240 PRK00578 prfB peptide chain re 48.1 2.1E+02 0.0046 31.8 11.6 24 465-488 7-32 (367)
241 PF12709 Kinetocho_Slk19: Cent 47.9 2.2E+02 0.0048 26.0 10.2 33 532-564 46-81 (87)
242 KOG4196 bZIP transcription fac 47.8 2E+02 0.0043 28.2 9.9 22 535-556 84-105 (135)
243 KOG0810 SNARE protein Syntaxin 47.7 2.6E+02 0.0056 30.3 12.0 46 533-581 239-284 (297)
244 PF09726 Macoilin: Transmembra 47.7 3.2E+02 0.007 32.8 13.8 111 462-572 542-655 (697)
245 PF13874 Nup54: Nucleoporin co 47.5 81 0.0017 29.9 7.4 53 460-516 32-84 (141)
246 PF05701 WEMBL: Weak chloropla 47.5 2.8E+02 0.0061 31.8 12.9 50 542-593 389-438 (522)
247 PF09325 Vps5: Vps5 C terminal 46.9 1.4E+02 0.0031 29.3 9.4 13 457-469 121-133 (236)
248 KOG0977 Nuclear envelope prote 46.7 1.1E+02 0.0025 35.6 9.7 34 527-560 157-190 (546)
249 PF07888 CALCOCO1: Calcium bin 46.5 4E+02 0.0087 31.3 13.9 33 461-493 167-199 (546)
250 PF09726 Macoilin: Transmembra 46.4 2.3E+02 0.005 34.0 12.3 29 539-567 545-573 (697)
251 KOG3091 Nuclear pore complex, 46.3 1E+02 0.0022 35.7 9.0 53 460-516 336-388 (508)
252 PF06160 EzrA: Septation ring 46.3 1.5E+02 0.0033 34.1 10.7 102 462-563 310-424 (560)
253 TIGR02680 conserved hypothetic 46.0 3.1E+02 0.0068 35.1 14.1 25 458-482 237-261 (1353)
254 PF14197 Cep57_CLD_2: Centroso 46.0 1.7E+02 0.0038 25.2 8.4 58 493-564 8-65 (69)
255 PF12718 Tropomyosin_1: Tropom 45.9 2.8E+02 0.0061 26.7 13.2 19 542-560 111-129 (143)
256 KOG0161 Myosin class II heavy 45.8 2.8E+02 0.006 37.2 13.7 81 483-563 1006-1086(1930)
257 PF12018 DUF3508: Domain of un 44.9 1.6E+02 0.0034 31.2 9.7 59 461-519 1-60 (281)
258 KOG0976 Rho/Rac1-interacting s 44.7 4.2E+02 0.0091 33.0 13.8 78 484-561 121-209 (1265)
259 PF07964 Red1: Rec10 / Red1; 44.5 93 0.002 37.3 8.7 63 457-519 629-692 (706)
260 COG3352 FlaC Putative archaeal 44.3 88 0.0019 31.2 7.2 15 457-471 43-57 (157)
261 KOG3990 Uncharacterized conser 44.1 1.2E+02 0.0027 32.5 8.7 79 451-559 216-294 (305)
262 KOG0995 Centromere-associated 44.0 2.9E+02 0.0063 32.7 12.2 108 452-566 253-366 (581)
263 PF10267 Tmemb_cc2: Predicted 43.6 4E+02 0.0087 30.1 13.0 28 570-597 336-363 (395)
264 KOG0250 DNA repair protein RAD 43.5 4E+02 0.0086 33.7 13.9 9 252-260 101-109 (1074)
265 PF12128 DUF3584: Protein of u 43.4 4.2E+02 0.0091 33.5 14.5 102 463-564 357-460 (1201)
266 PF11932 DUF3450: Protein of u 43.4 3.4E+02 0.0074 27.8 11.7 18 554-571 129-146 (251)
267 PF12761 End3: Actin cytoskele 43.2 58 0.0013 33.4 6.0 48 509-559 133-180 (195)
268 PF03114 BAR: BAR domain; Int 43.0 3E+02 0.0064 26.0 11.3 105 457-567 25-149 (229)
269 KOG0977 Nuclear envelope prote 42.6 4.9E+02 0.011 30.7 13.8 40 458-497 99-138 (546)
270 PF14915 CCDC144C: CCDC144C pr 42.2 5.1E+02 0.011 28.5 14.7 109 461-579 147-258 (305)
271 KOG0161 Myosin class II heavy 42.2 2.9E+02 0.0062 37.1 13.0 81 482-562 893-987 (1930)
272 KOG3091 Nuclear pore complex, 41.5 3.3E+02 0.0071 31.8 12.0 16 493-508 386-401 (508)
273 COG3883 Uncharacterized protei 41.4 4.5E+02 0.0098 28.3 12.4 105 461-568 101-212 (265)
274 PF14992 TMCO5: TMCO5 family 41.4 5E+02 0.011 28.2 13.4 22 465-486 116-137 (280)
275 PF07106 TBPIP: Tat binding pr 41.4 89 0.0019 30.1 6.8 12 357-368 31-42 (169)
276 COG1842 PspA Phage shock prote 41.2 4.3E+02 0.0094 27.4 14.2 35 463-497 15-49 (225)
277 PF08614 ATG16: Autophagy prot 41.1 1.8E+02 0.0038 28.8 9.0 25 536-560 148-172 (194)
278 COG5185 HEC1 Protein involved 41.0 3.2E+02 0.007 31.9 11.8 104 457-564 294-400 (622)
279 PF06008 Laminin_I: Laminin Do 41.0 4.1E+02 0.0088 27.4 11.9 16 494-509 124-139 (264)
280 PF12329 TMF_DNA_bd: TATA elem 40.8 2.3E+02 0.0049 24.5 8.5 65 495-566 3-67 (74)
281 cd00179 SynN Syntaxin N-termin 40.6 2.8E+02 0.0061 25.5 9.7 32 464-495 5-36 (151)
282 PRK10698 phage shock protein P 40.5 4.2E+02 0.0092 27.1 13.5 65 504-568 77-142 (222)
283 COG4942 Membrane-bound metallo 40.2 1.7E+02 0.0036 33.3 9.5 11 589-599 145-155 (420)
284 COG4942 Membrane-bound metallo 40.2 2.7E+02 0.0058 31.7 11.0 8 465-472 38-45 (420)
285 cd07618 BAR_Rich1 The Bin/Amph 40.0 4.8E+02 0.01 27.6 13.9 88 510-597 117-224 (246)
286 TIGR01069 mutS2 MutS2 family p 39.9 5E+02 0.011 31.5 13.9 34 490-523 529-562 (771)
287 PF14073 Cep57_CLD: Centrosome 39.8 3.7E+02 0.008 27.4 10.9 31 458-488 4-34 (178)
288 PLN02678 seryl-tRNA synthetase 39.8 1.5E+02 0.0032 33.7 9.1 9 458-466 17-25 (448)
289 PF04380 BMFP: Membrane fusoge 39.8 1.4E+02 0.003 26.0 7.1 30 539-568 50-79 (79)
290 smart00035 CLa CLUSTERIN alpha 39.7 78 0.0017 33.0 6.3 36 477-512 103-138 (216)
291 PF04906 Tweety: Tweety; Inte 39.7 1.8E+02 0.0039 32.4 9.6 23 513-535 144-166 (406)
292 KOG0963 Transcription factor/C 39.5 2.8E+02 0.0061 33.0 11.4 91 465-565 249-343 (629)
293 PF08700 Vps51: Vps51/Vps67; 39.4 2.3E+02 0.0051 23.9 10.0 76 477-566 8-85 (87)
294 PF11559 ADIP: Afadin- and alp 39.1 3.4E+02 0.0073 25.6 10.9 51 458-516 35-85 (151)
295 COG3883 Uncharacterized protei 39.1 1.1E+02 0.0025 32.6 7.6 35 493-527 41-75 (265)
296 PF04100 Vps53_N: Vps53-like, 39.1 5.8E+02 0.013 28.3 13.4 113 457-570 24-136 (383)
297 PF04728 LPP: Lipoprotein leuc 39.0 71 0.0015 26.9 4.9 27 535-561 13-39 (56)
298 PF14932 HAUS-augmin3: HAUS au 39.0 2.6E+02 0.0056 29.1 10.1 63 535-601 131-193 (256)
299 PF05769 DUF837: Protein of un 39.0 2.6E+02 0.0056 28.1 9.7 41 461-502 13-53 (181)
300 COG4467 Regulator of replicati 39.0 1E+02 0.0023 29.2 6.5 23 542-564 32-54 (114)
301 cd07673 F-BAR_FCHO2 The F-BAR 38.8 3E+02 0.0065 28.9 10.6 27 457-483 11-37 (269)
302 PRK13169 DNA replication intia 38.8 1.1E+02 0.0025 28.6 6.8 30 538-567 28-57 (110)
303 TIGR03495 phage_LysB phage lys 38.8 2.8E+02 0.006 27.0 9.5 61 493-553 36-96 (135)
304 KOG4643 Uncharacterized coiled 38.7 4.6E+02 0.0099 33.3 13.2 95 467-569 179-294 (1195)
305 PF01834 XRCC1_N: XRCC1 N term 38.2 3E+02 0.0066 27.4 9.8 118 232-356 9-152 (153)
306 PF05615 THOC7: Tho complex su 37.9 3.4E+02 0.0074 25.3 13.6 104 456-570 14-119 (139)
307 KOG0995 Centromere-associated 37.8 2.7E+02 0.0059 32.9 10.8 35 519-553 288-322 (581)
308 KOG0612 Rho-associated, coiled 37.1 5.6E+02 0.012 33.1 13.8 73 486-558 619-693 (1317)
309 PF10212 TTKRSYEDQ: Predicted 37.1 4.4E+02 0.0096 30.8 12.3 102 458-566 413-514 (518)
310 KOG0979 Structural maintenance 37.0 5.3E+02 0.011 32.6 13.4 38 460-497 183-220 (1072)
311 PF15035 Rootletin: Ciliary ro 36.9 2.8E+02 0.006 27.9 9.6 33 532-564 81-113 (182)
312 PF15619 Lebercilin: Ciliary p 36.8 2.5E+02 0.0055 28.4 9.4 93 461-560 15-110 (194)
313 PF04912 Dynamitin: Dynamitin 36.8 6E+02 0.013 27.8 13.2 34 463-496 244-278 (388)
314 PRK05771 V-type ATP synthase s 36.7 4.3E+02 0.0093 30.8 12.5 32 457-488 214-245 (646)
315 PRK12704 phosphodiesterase; Pr 36.7 7.3E+02 0.016 28.8 14.9 36 541-576 164-199 (520)
316 TIGR01834 PHA_synth_III_E poly 36.6 2.8E+02 0.0061 30.5 10.2 31 538-568 288-318 (320)
317 KOG2751 Beclin-like protein [S 36.3 4.6E+02 0.0099 30.2 12.0 95 457-551 142-237 (447)
318 KOG0963 Transcription factor/C 36.2 5.7E+02 0.012 30.6 13.1 105 460-568 191-314 (629)
319 KOG0396 Uncharacterized conser 36.2 3.4E+02 0.0073 30.7 10.8 59 450-508 10-69 (389)
320 PF11932 DUF3450: Protein of u 36.2 4.8E+02 0.01 26.7 11.5 7 607-613 210-216 (251)
321 PRK00409 recombination and DNA 36.1 5.6E+02 0.012 31.1 13.5 13 474-486 515-527 (782)
322 COG0497 RecN ATPase involved i 36.0 2.7E+02 0.0059 32.8 10.5 39 506-544 299-337 (557)
323 PF14988 DUF4515: Domain of un 35.7 3E+02 0.0065 28.1 9.8 51 481-531 38-91 (206)
324 smart00338 BRLZ basic region l 35.7 79 0.0017 25.9 4.7 33 535-567 29-61 (65)
325 COG5278 Predicted periplasmic 35.7 4E+02 0.0086 27.5 10.6 10 576-585 187-196 (207)
326 COG0497 RecN ATPase involved i 35.6 3.9E+02 0.0084 31.5 11.7 71 493-567 300-370 (557)
327 cd07627 BAR_Vps5p The Bin/Amph 35.5 3E+02 0.0065 27.6 9.7 12 458-469 102-113 (216)
328 KOG4677 Golgi integral membran 35.5 2.9E+02 0.0062 32.1 10.3 78 446-523 191-275 (554)
329 PF06632 XRCC4: DNA double-str 35.5 5.5E+02 0.012 28.4 12.3 26 322-347 8-33 (342)
330 KOG2483 Upstream transcription 35.3 85 0.0018 32.8 5.9 70 479-562 72-142 (232)
331 PF15290 Syntaphilin: Golgi-lo 35.2 5E+02 0.011 28.5 11.5 88 484-580 69-171 (305)
332 PF15254 CCDC14: Coiled-coil d 35.2 5.7E+02 0.012 31.5 13.1 19 538-556 514-532 (861)
333 PF05483 SCP-1: Synaptonemal c 35.1 6.2E+02 0.014 30.9 13.2 96 463-562 448-557 (786)
334 PRK10803 tol-pal system protei 35.1 99 0.0021 32.3 6.4 18 540-557 83-100 (263)
335 PF08702 Fib_alpha: Fibrinogen 35.0 4.3E+02 0.0094 25.6 13.3 35 460-494 38-72 (146)
336 PF10146 zf-C4H2: Zinc finger- 34.8 4.1E+02 0.0089 27.7 10.7 64 499-562 27-90 (230)
337 KOG0972 Huntingtin interacting 34.5 4E+02 0.0087 29.5 10.8 41 468-508 237-277 (384)
338 KOG4360 Uncharacterized coiled 34.5 4.3E+02 0.0094 31.1 11.6 60 471-531 222-281 (596)
339 PRK06041 flagellar assembly pr 34.4 3.3E+02 0.0071 31.7 10.9 55 459-513 315-374 (553)
340 COG4467 Regulator of replicati 34.4 1.3E+02 0.0029 28.5 6.4 47 490-557 8-54 (114)
341 PRK09343 prefoldin subunit bet 34.4 3.7E+02 0.0081 25.0 9.5 27 460-486 23-49 (121)
342 PF12126 DUF3583: Protein of u 34.3 4.7E+02 0.01 28.8 11.2 78 476-555 3-84 (324)
343 KOG0243 Kinesin-like protein [ 34.3 8.2E+02 0.018 31.1 14.5 101 457-557 447-557 (1041)
344 PF05557 MAD: Mitotic checkpoi 34.3 37 0.0008 39.9 3.6 97 464-564 439-535 (722)
345 PF05983 Med7: MED7 protein; 34.3 2.2E+02 0.0047 28.0 8.3 83 471-562 79-161 (162)
346 PF00517 GP41: Retroviral enve 34.2 2.6E+02 0.0057 28.3 9.1 74 462-538 43-146 (204)
347 KOG0996 Structural maintenance 34.0 5.5E+02 0.012 33.1 13.0 33 530-562 551-586 (1293)
348 PF04899 MbeD_MobD: MbeD/MobD 33.9 3.2E+02 0.007 23.8 9.8 66 483-558 3-68 (70)
349 PF05384 DegS: Sensor protein 33.9 4.9E+02 0.011 25.9 14.1 65 504-568 91-155 (159)
350 COG2900 SlyX Uncharacterized p 33.8 2E+02 0.0043 25.5 7.0 51 462-516 5-55 (72)
351 KOG4809 Rab6 GTPase-interactin 33.7 5.3E+02 0.012 30.7 12.2 104 457-566 337-444 (654)
352 PF06160 EzrA: Septation ring 33.6 2.9E+02 0.0064 31.9 10.4 60 458-517 344-406 (560)
353 PRK06798 fliD flagellar cappin 33.6 1.3E+02 0.0029 33.7 7.6 51 463-513 377-427 (440)
354 PF14197 Cep57_CLD_2: Centroso 33.5 3.1E+02 0.0068 23.6 8.7 27 535-561 29-55 (69)
355 KOG4196 bZIP transcription fac 33.5 1.8E+02 0.0038 28.5 7.2 55 510-565 46-100 (135)
356 PF05335 DUF745: Protein of un 33.4 5.4E+02 0.012 26.2 13.6 104 457-560 59-172 (188)
357 PRK03947 prefoldin subunit alp 33.2 4E+02 0.0087 24.8 10.9 21 539-559 108-128 (140)
358 TIGR02894 DNA_bind_RsfA transc 33.0 3.4E+02 0.0074 27.3 9.3 40 473-512 52-95 (161)
359 KOG3433 Protein involved in me 32.9 3.3E+02 0.0072 28.2 9.4 28 500-527 98-125 (203)
360 PRK06798 fliD flagellar cappin 32.8 1.1E+02 0.0023 34.5 6.6 52 460-511 381-432 (440)
361 KOG0971 Microtubule-associated 32.6 1.1E+03 0.025 29.8 18.6 90 476-572 262-362 (1243)
362 PF09738 DUF2051: Double stran 32.6 6E+02 0.013 27.7 11.9 78 478-562 83-163 (302)
363 PF09755 DUF2046: Uncharacteri 32.6 6.4E+02 0.014 27.8 12.0 56 457-512 105-164 (310)
364 PRK00409 recombination and DNA 32.4 7.2E+02 0.016 30.2 13.7 11 487-497 517-527 (782)
365 PF00769 ERM: Ezrin/radixin/mo 32.4 6E+02 0.013 26.5 12.9 52 518-569 75-126 (246)
366 PF14362 DUF4407: Domain of un 32.4 6E+02 0.013 26.5 17.4 60 459-518 97-156 (301)
367 TIGR02492 flgK_ends flagellar 32.1 1.8E+02 0.004 30.9 8.0 17 514-530 194-210 (322)
368 PF07439 DUF1515: Protein of u 32.0 2.9E+02 0.0062 26.4 8.1 51 463-513 13-63 (112)
369 PF13166 AAA_13: AAA domain 32.0 5.5E+02 0.012 29.8 12.3 110 457-568 339-453 (712)
370 KOG4603 TBP-1 interacting prot 31.8 2.4E+02 0.0051 29.0 8.1 64 498-566 80-143 (201)
371 PRK03947 prefoldin subunit alp 31.7 4.3E+02 0.0093 24.6 12.5 27 535-561 111-137 (140)
372 KOG0976 Rho/Rac1-interacting s 31.7 5.9E+02 0.013 31.8 12.4 45 474-518 261-305 (1265)
373 PF12777 MT: Microtubule-bindi 31.7 1.5E+02 0.0033 31.8 7.4 29 537-565 282-310 (344)
374 KOG0979 Structural maintenance 31.7 7.2E+02 0.016 31.5 13.4 92 464-555 638-729 (1072)
375 PF12718 Tropomyosin_1: Tropom 31.5 4.8E+02 0.01 25.1 12.9 42 464-509 20-61 (143)
376 PF03961 DUF342: Protein of un 31.5 2.5E+02 0.0053 31.3 9.1 30 457-486 333-362 (451)
377 PF04912 Dynamitin: Dynamitin 31.5 2.7E+02 0.0059 30.4 9.3 7 531-537 353-359 (388)
378 smart00503 SynN Syntaxin N-ter 31.4 3.6E+02 0.0077 23.6 9.8 70 492-561 3-72 (117)
379 PF04576 Zein-binding: Zein-bi 31.4 4.3E+02 0.0093 24.5 11.8 89 476-567 3-91 (94)
380 PRK05771 V-type ATP synthase s 31.3 1.4E+02 0.0031 34.6 7.6 15 551-565 220-234 (646)
381 KOG3156 Uncharacterized membra 31.3 6.5E+02 0.014 26.6 14.4 96 456-559 84-194 (220)
382 PF09730 BicD: Microtubule-ass 31.2 8.8E+02 0.019 29.6 13.9 99 460-558 354-459 (717)
383 PF10174 Cast: RIM-binding pro 31.2 4.8E+02 0.01 31.9 11.9 29 539-567 555-583 (775)
384 KOG1103 Predicted coiled-coil 31.2 81 0.0018 35.3 5.2 102 465-566 160-286 (561)
385 COG3074 Uncharacterized protei 31.1 3.3E+02 0.0072 24.3 7.9 42 527-568 27-68 (79)
386 PRK13182 racA polar chromosome 31.1 2.7E+02 0.006 27.8 8.5 62 497-567 85-146 (175)
387 PF04849 HAP1_N: HAP1 N-termin 30.9 7.5E+02 0.016 27.2 13.2 108 455-566 157-275 (306)
388 PF04163 Tht1: Tht1-like nucle 30.9 9.4E+02 0.02 28.3 19.2 11 183-193 93-103 (544)
389 KOG2185 Predicted RNA-processi 30.9 3.5E+02 0.0075 31.1 9.9 103 459-567 377-479 (486)
390 KOG4460 Nuclear pore complex, 30.9 2.1E+02 0.0046 33.9 8.5 56 536-591 666-727 (741)
391 PF10158 LOH1CR12: Tumour supp 30.8 3.6E+02 0.0078 25.9 8.9 15 516-530 72-86 (131)
392 PF07798 DUF1640: Protein of u 30.7 5.2E+02 0.011 25.3 12.7 20 543-562 135-154 (177)
393 PRK05621 F0F1 ATP synthase sub 30.6 3.6E+02 0.0078 28.2 9.7 71 455-531 208-278 (284)
394 PF08580 KAR9: Yeast cortical 30.5 9.1E+02 0.02 29.1 13.9 93 459-559 200-296 (683)
395 PF03148 Tektin: Tektin family 30.4 7E+02 0.015 27.5 12.2 66 505-570 266-341 (384)
396 TIGR00634 recN DNA repair prot 30.3 3.8E+02 0.0081 30.8 10.5 57 506-562 303-362 (563)
397 COG3334 Uncharacterized conser 30.2 2.6E+02 0.0055 28.8 8.2 64 485-572 73-138 (192)
398 PF09074 Mer2: Mer2; InterPro 30.2 6.3E+02 0.014 26.1 11.1 32 535-566 159-190 (190)
399 TIGR01010 BexC_CtrB_KpsE polys 30.1 5.1E+02 0.011 27.7 10.9 41 478-518 157-198 (362)
400 PF15450 DUF4631: Domain of un 29.9 6.1E+02 0.013 29.8 11.9 22 536-557 445-466 (531)
401 KOG0964 Structural maintenance 29.5 6.4E+02 0.014 32.0 12.4 96 493-591 421-519 (1200)
402 PF08702 Fib_alpha: Fibrinogen 29.4 5.4E+02 0.012 25.0 12.1 31 458-488 29-59 (146)
403 TIGR02132 phaR_Bmeg polyhydrox 29.3 4.9E+02 0.011 26.8 9.8 23 522-544 111-133 (189)
404 COG3937 Uncharacterized conser 29.3 1.9E+02 0.0041 27.4 6.5 23 547-569 84-106 (108)
405 cd00176 SPEC Spectrin repeats, 29.1 4.6E+02 0.0099 24.1 9.5 109 457-567 89-200 (213)
406 KOG3976 Mitochondrial F1F0-ATP 29.0 4.2E+02 0.0092 28.3 9.7 76 474-555 102-179 (247)
407 KOG0244 Kinesin-like protein [ 28.9 2.6E+02 0.0056 34.7 9.2 46 463-509 546-591 (913)
408 PF13805 Pil1: Eisosome compon 28.8 3.4E+02 0.0073 29.3 9.1 36 481-516 98-133 (271)
409 KOG4603 TBP-1 interacting prot 28.8 6.6E+02 0.014 25.9 11.3 61 461-523 89-149 (201)
410 PRK05431 seryl-tRNA synthetase 28.7 1.9E+02 0.0041 32.3 7.7 25 543-567 70-94 (425)
411 PF14728 PHTB1_C: PTHB1 C-term 28.3 7.6E+02 0.017 27.5 12.1 81 477-566 199-281 (377)
412 COG4026 Uncharacterized protei 28.3 4.1E+02 0.0089 28.4 9.4 68 501-568 132-206 (290)
413 PRK08724 fliD flagellar cappin 28.2 1.7E+02 0.0037 35.0 7.5 40 463-502 622-661 (673)
414 PF05667 DUF812: Protein of un 28.2 2.5E+02 0.0054 33.1 8.7 34 504-537 488-521 (594)
415 TIGR02132 phaR_Bmeg polyhydrox 28.2 4.6E+02 0.01 27.0 9.4 23 547-569 108-130 (189)
416 TIGR00020 prfB peptide chain r 28.2 6.7E+02 0.014 28.0 11.5 14 465-478 7-20 (364)
417 TIGR01005 eps_transp_fam exopo 28.1 1E+03 0.022 28.2 13.7 24 538-561 344-367 (754)
418 KOG4643 Uncharacterized coiled 28.0 1.1E+03 0.024 30.2 14.0 14 458-471 436-449 (1195)
419 TIGR01069 mutS2 MutS2 family p 27.9 9E+02 0.019 29.4 13.4 52 480-531 505-556 (771)
420 COG0419 SbcC ATPase involved i 27.9 9.7E+02 0.021 29.2 13.8 18 332-350 72-89 (908)
421 COG3096 MukB Uncharacterized p 27.9 1.3E+03 0.027 29.1 14.1 107 459-565 985-1106(1480)
422 PF08826 DMPK_coil: DMPK coile 27.7 3.9E+02 0.0084 22.8 8.6 35 531-565 24-58 (61)
423 PF04906 Tweety: Tweety; Inte 27.5 5.9E+02 0.013 28.4 11.1 26 495-520 140-165 (406)
424 KOG3119 Basic region leucine z 27.3 2.2E+02 0.0048 30.0 7.5 27 539-565 222-248 (269)
425 TIGR03513 GldL_gliding gliding 27.3 7.2E+02 0.016 25.8 11.7 23 543-565 169-191 (202)
426 KOG2685 Cystoskeletal protein 27.1 6.2E+02 0.014 29.0 11.1 100 482-594 69-171 (421)
427 PF04129 Vps52: Vps52 / Sac2 f 27.0 5.7E+02 0.012 29.3 11.1 27 493-519 31-57 (508)
428 PF08826 DMPK_coil: DMPK coile 26.7 4E+02 0.0087 22.7 7.9 21 539-559 39-59 (61)
429 TIGR03752 conj_TIGR03752 integ 26.6 5E+02 0.011 30.1 10.4 55 467-525 47-101 (472)
430 PF05816 TelA: Toxic anion res 26.6 8.3E+02 0.018 26.3 15.3 124 459-582 50-205 (333)
431 PF06120 Phage_HK97_TLTM: Tail 26.6 3.8E+02 0.0082 29.2 9.2 27 541-567 129-155 (301)
432 KOG2991 Splicing regulator [RN 26.6 3.6E+02 0.0079 29.3 8.8 11 460-470 212-222 (330)
433 TIGR03323 alt_F1F0_F1_gam alte 26.5 4.6E+02 0.01 27.7 9.7 70 456-531 210-279 (285)
434 cd02433 Nodulin-21_like_2 Nodu 26.5 7E+02 0.015 25.9 10.8 42 478-520 69-110 (234)
435 cd07648 F-BAR_FCHO The F-BAR ( 26.5 7.1E+02 0.015 25.5 13.0 28 456-483 3-30 (261)
436 KOG4657 Uncharacterized conser 26.4 8.2E+02 0.018 26.2 12.2 9 496-504 71-79 (246)
437 TIGR03545 conserved hypothetic 26.4 3.9E+02 0.0084 31.3 9.8 11 437-447 146-156 (555)
438 KOG0999 Microtubule-associated 26.1 3.9E+02 0.0084 31.9 9.5 21 542-562 173-193 (772)
439 PF09728 Taxilin: Myosin-like 26.0 8.6E+02 0.019 26.3 13.1 53 457-509 21-76 (309)
440 PF10498 IFT57: Intra-flagella 25.9 9.4E+02 0.02 26.7 13.9 19 550-568 332-350 (359)
441 KOG0933 Structural maintenance 25.8 1.2E+03 0.026 29.9 13.8 27 537-563 841-867 (1174)
442 KOG0993 Rab5 GTPase effector R 25.6 4.1E+02 0.0089 30.6 9.3 81 460-548 123-205 (542)
443 COG1428 Deoxynucleoside kinase 25.6 1.1E+02 0.0023 32.0 4.7 40 457-496 138-178 (216)
444 PF02994 Transposase_22: L1 tr 25.5 1.5E+02 0.0033 32.5 6.2 40 522-561 148-187 (370)
445 PF14257 DUF4349: Domain of un 25.5 3.4E+02 0.0074 27.8 8.4 91 452-556 100-193 (262)
446 PF07195 FliD_C: Flagellar hoo 25.5 1.4E+02 0.0031 30.3 5.6 41 461-501 196-236 (239)
447 PF13270 DUF4061: Domain of un 25.4 3.6E+02 0.0078 24.5 7.4 26 531-556 64-89 (90)
448 PRK08724 fliD flagellar cappin 25.3 2.3E+02 0.005 34.0 7.9 53 464-516 616-668 (673)
449 PF02388 FemAB: FemAB family; 25.3 2.8E+02 0.0061 30.6 8.1 95 458-563 197-297 (406)
450 PF13874 Nup54: Nucleoporin co 25.3 5.2E+02 0.011 24.5 8.9 32 457-488 43-74 (141)
451 PF15070 GOLGA2L5: Putative go 25.3 1.2E+03 0.026 27.8 13.8 19 463-481 48-66 (617)
452 PRK10803 tol-pal system protei 25.1 3.3E+02 0.0071 28.5 8.2 61 465-529 40-100 (263)
453 PF02050 FliJ: Flagellar FliJ 24.9 4.3E+02 0.0093 22.4 9.9 65 460-524 7-72 (123)
454 TIGR02449 conserved hypothetic 24.9 4.6E+02 0.0099 22.7 8.3 61 493-567 3-63 (65)
455 PF06320 GCN5L1: GCN5-like pro 24.9 5.9E+02 0.013 24.0 9.9 72 456-531 31-105 (121)
456 PRK08871 flgK flagellar hook-a 24.9 1.9E+02 0.0042 34.0 7.2 18 514-531 193-210 (626)
457 KOG0946 ER-Golgi vesicle-tethe 24.9 5.2E+02 0.011 32.1 10.5 28 476-503 647-677 (970)
458 PF00170 bZIP_1: bZIP transcri 24.6 1.7E+02 0.0036 24.0 4.8 33 535-567 29-61 (64)
459 PRK14111 F0F1 ATP synthase sub 24.5 5.3E+02 0.012 27.2 9.7 71 455-531 212-282 (290)
460 KOG0240 Kinesin (SMY1 subfamil 24.5 9.4E+02 0.02 28.8 12.2 38 476-513 414-451 (607)
461 PF06419 COG6: Conserved oligo 24.5 5.5E+02 0.012 30.2 10.7 34 478-511 26-59 (618)
462 PRK10869 recombination and rep 24.5 7.5E+02 0.016 28.7 11.6 57 506-562 298-357 (553)
463 PRK14110 F0F1 ATP synthase sub 24.3 5.3E+02 0.011 27.3 9.6 70 456-531 215-284 (291)
464 PF15066 CAGE1: Cancer-associa 24.0 1.1E+03 0.024 27.7 12.4 96 466-572 332-437 (527)
465 KOG0709 CREB/ATF family transc 23.9 3.7E+02 0.0081 31.1 8.8 37 456-492 246-285 (472)
466 KOG4451 Uncharacterized conser 23.9 5.9E+02 0.013 27.3 9.6 12 548-559 108-119 (286)
467 PF00769 ERM: Ezrin/radixin/mo 23.9 4.5E+02 0.0098 27.4 8.9 39 530-568 73-111 (246)
468 PF15254 CCDC14: Coiled-coil d 23.8 1.1E+03 0.025 29.2 12.9 42 458-499 401-450 (861)
469 PRK10361 DNA recombination pro 23.8 1.2E+03 0.026 27.1 13.7 49 522-570 96-164 (475)
470 PF10392 COG5: Golgi transport 23.8 5.1E+02 0.011 24.2 8.5 14 458-471 33-46 (132)
471 PF01920 Prefoldin_2: Prefoldi 23.7 3.6E+02 0.0079 23.2 7.1 73 460-532 14-97 (106)
472 TIGR02894 DNA_bind_RsfA transc 23.7 4.4E+02 0.0095 26.6 8.3 31 475-506 17-47 (161)
473 COG0419 SbcC ATPase involved i 23.5 1.4E+03 0.031 27.9 14.4 27 462-488 312-338 (908)
474 PRK14127 cell division protein 23.5 1.5E+02 0.0032 27.8 4.8 17 500-516 26-42 (109)
475 TIGR00414 serS seryl-tRNA synt 23.2 4.1E+02 0.009 29.6 9.0 14 512-525 45-58 (418)
476 KOG0982 Centrosomal protein Nu 23.0 1.2E+03 0.027 27.1 12.8 31 464-494 249-279 (502)
477 COG4266 Alc Allantoicase [Nucl 23.0 4.1E+02 0.0088 29.1 8.4 133 218-358 181-334 (334)
478 TIGR02680 conserved hypothetic 23.0 1.3E+03 0.029 29.8 14.2 24 460-483 232-255 (1353)
479 KOG0612 Rho-associated, coiled 22.9 1E+03 0.022 30.9 12.7 30 538-567 521-550 (1317)
480 PF00231 ATP-synt: ATP synthas 22.9 6.4E+02 0.014 26.3 9.9 71 455-531 214-284 (290)
481 KOG0811 SNARE protein PEP12/VA 22.8 9.7E+02 0.021 25.8 14.8 52 466-518 143-194 (269)
482 PRK13923 putative spore coat p 22.8 8.1E+02 0.018 24.8 10.6 92 474-567 17-139 (170)
483 PF09731 Mitofilin: Mitochondr 22.7 1.2E+03 0.026 26.7 16.6 27 540-566 372-398 (582)
484 PF05008 V-SNARE: Vesicle tran 22.5 2.4E+02 0.0053 23.6 5.6 52 489-547 24-76 (79)
485 cd07597 BAR_SNX8 The Bin/Amphi 22.5 8.7E+02 0.019 25.1 12.1 28 546-573 173-200 (246)
486 PRK05683 flgK flagellar hook-a 22.4 2.9E+02 0.0063 33.0 8.0 20 513-532 192-211 (676)
487 PF10359 Fmp27_WPPW: RNA pol I 22.3 2.6E+02 0.0056 31.7 7.3 30 539-568 200-229 (475)
488 PF04803 Cor1: Cor1/Xlr/Xmr co 22.2 6.5E+02 0.014 24.2 8.9 21 511-531 89-109 (130)
489 PF06570 DUF1129: Protein of u 22.2 4.5E+02 0.0098 26.2 8.3 45 478-527 7-51 (206)
490 PRK13425 F0F1 ATP synthase sub 22.2 6.3E+02 0.014 26.8 9.7 71 455-531 213-283 (291)
491 PRK08032 fliD flagellar cappin 22.2 2.7E+02 0.0059 31.3 7.5 42 468-509 409-450 (462)
492 TIGR03520 GldE gliding motilit 22.1 3E+02 0.0065 30.5 7.6 18 610-627 83-100 (408)
493 cd04779 HTH_MerR-like_sg4 Heli 22.1 3.4E+02 0.0074 25.9 7.0 61 463-524 48-108 (134)
494 PF07195 FliD_C: Flagellar hoo 22.0 2E+02 0.0043 29.2 5.8 42 461-502 196-237 (239)
495 TIGR01554 major_cap_HK97 phage 21.9 3.8E+02 0.0082 28.9 8.2 70 499-568 1-70 (378)
496 PRK13427 F0F1 ATP synthase sub 21.9 6.4E+02 0.014 26.7 9.7 73 454-532 211-283 (289)
497 PF09789 DUF2353: Uncharacteri 21.9 6.3E+02 0.014 27.9 9.8 78 489-566 8-99 (319)
498 KOG1161 Protein involved in va 21.8 3.4E+02 0.0074 29.8 7.7 84 460-567 22-114 (310)
499 PF03245 Phage_lysis: Bacterio 21.7 4.7E+02 0.01 24.6 7.8 56 486-555 3-58 (125)
500 PRK07737 fliD flagellar cappin 21.6 2.1E+02 0.0045 32.8 6.4 45 461-505 444-488 (501)
No 1
>KOG1396 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.7e-67 Score=556.57 Aligned_cols=405 Identities=32% Similarity=0.397 Sum_probs=311.2
Q ss_pred cccccccCCCCCcccccccccCceEeeccccccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeeccccc
Q 006838 208 VNITHRFDPDGTEYNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYS 287 (629)
Q Consensus 208 ~~~~hr~~p~g~~~NYAS~d~GAkIl~sn~eakgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fS 287 (629)
.+..|+.+|+++||||||.+||||||++||+|+|+++||.+|+|+||||||++++|||||||||+|+|++|.||||||||
T Consensus 113 ~ge~~~~~p~~kr~NyAS~~cgAkIi~~n~ea~~~~ail~~dkd~yllnpcss~~K~vviel~e~~lv~~~~ian~e~~s 192 (530)
T KOG1396|consen 113 NGEKAIKKPQKKRYNYASAECGAKILAANPEAKGASAILLEDKDKYLLNPCSSEKKFVVIELCERILVNTLRIANFEHFS 192 (530)
T ss_pred CceeeeecCCccccchhhhhhhhHHHhcChhhccchhhhhhchHHHhhcccccccceEEeehhHHHhhhheeeeeecccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeeccCCCCCceeeEEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccchHHHHHHh
Q 006838 288 SNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIERMLED 367 (629)
Q Consensus 288 S~pKdF~VsgS~~YPt~~W~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t~vE~~leD 367 (629)
|.||+|+|++|.+||+..|..||+|+|.|.|+.|+|++.++.|+|||||+++||||+|||||||+|||||++|+|+|.+|
T Consensus 193 s~pk~f~v~~s~~~P~~~w~~~G~f~a~N~r~lQsF~~n~~~wakYlKIellsHygsEfyCpvSli~VyG~tm~Ee~ee~ 272 (530)
T KOG1396|consen 193 SPPKDFSVSISIRYPTPSWIHLGQFHARNERNLQSFPLNEQKWAKYLKIELLSHYGSEFYCPVSLIRVYGKTMVEEYEED 272 (530)
T ss_pred CCCCceeeccccccCCccceecCcccccchhhhcCCCCCchhhhhHhhhhhhhhcccccccchhhhhhhchhHHHHHHHH
Confidence 99999999999999999999999999999999999998778999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCC-CCCCCC-----CCCCCCCCCCCCCCCCCCccccc-Cccccccccccccccccc-c--ccCCCCCCCC
Q 006838 368 LFVASEGSVPNK-LPEPNS-----STMPSSEPEVGSSDCNKSSKVQN-GVKTDNIQVENIENAQLF-N--ENVANPLPRA 437 (629)
Q Consensus 368 ~i~~~~~~~~~~-~~~~~~-----~~~~~~~pe~~~~~~~~~~~~~~-~~d~~~~~~~n~~~~~~~-~--~~~~~~~~~~ 437 (629)
.+.+++...... ..+++. +......++..+...+..-..+. ..|.-... +...++. + .....+....
T Consensus 273 ~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~e~~~~~tk~~~~~~~~~~n~~~~~---s~~i~~~~~~iv~~~~~~~~p 349 (530)
T KOG1396|consen 273 NDSAQESNVQELFEEDYDYPLDPQTGQDKSSKEVTGSATKQTVNMVNIAANILSAK---SEDITEKNSEIVENATATKAP 349 (530)
T ss_pred HHHHHHHHHHHhhhcCcccCCCccccccccCccCccccccchhhhhhcccchhccc---cccccccchhheecccccccc
Confidence 887665311110 011111 11111112122222221110000 00000000 0011110 0 1122334567
Q ss_pred CCCCCccceeecCCCCCCchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHhHHHHHH
Q 006838 438 KIPDPVVEVRQHPIGRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRI--SLLLEKSKLELEE 515 (629)
Q Consensus 438 ~~~~p~~e~~q~~~~r~~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~--~~~Lek~~aeI~~ 515 (629)
+.|++++....+++.++|++.|+|++|++.+.||.+.|..+.|++|+..+++..|..+++.+.+. ....+.+..++--
T Consensus 350 k~p~~~~~s~~~~~p~~~~t~v~k~~m~~~~~l~a~~s~i~~~vqe~~~~~s~~~~~l~~~~~~~~~~~~t~~~~~~~~~ 429 (530)
T KOG1396|consen 350 KKPDSVEVSKNLPSPEIPTTEVHKRDMKPSRGLEAKRSPIVKYVQEREELLSKSFETLLKSLEKEWFESETQIFEEELMT 429 (530)
T ss_pred ccccccccccCCCCCcCcchhHhhhhhccccccchhhhhHHHHHHHHHHhhhhhHHHHHhhhhhhhchhHHHHhhhhhhh
Confidence 88999988888899999999999999999999999999999999999999999999999988877 1111111111111
Q ss_pred HHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006838 516 LVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTL 595 (629)
Q Consensus 516 L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f~~la~~~l~~~~~~~~ 595 (629)
+++ +..-.+.+...-|...|+.+|..+..++.-.-..++++-++.+.+|...++||..+..|+-.+++-....++-
T Consensus 430 ~~~--e~~~~~~~~~~~sl~~~~~~l~~~~~~~~~~~~~l~~l~k~~~~~e~~~~~~~~~l~gl~~~~~i~r~~~~~~-- 505 (530)
T KOG1396|consen 430 ILE--ESSKSEAIYKWPSLRVVEERLLSATAETNGKLLLLEALPKRLSFQERVLVLVLTPLSGLLEYTVIEREAETVV-- 505 (530)
T ss_pred hhh--hcccHHhhhccchhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHHhhheeehhhhHHHHHHHHhhhccccee--
Confidence 111 1222334445667788899999999999999999999999999999999999999988876665443332222
Q ss_pred HHhhhcccccccCccchhhhhhhhHHHHhhh
Q 006838 596 LRASQCSKVRRTNRGWVLILLSSSMTIFVTL 626 (629)
Q Consensus 596 ~~~~~~~~~~~~~~~w~~ll~ss~~~~fi~~ 626 (629)
.+ ..+++.|...|.++++-.+|+.
T Consensus 506 -----~~--~~~~~~~~~~~~~~~~~~~~~~ 529 (530)
T KOG1396|consen 506 -----LG--SKNSSIEADDLVNSTVDAVILE 529 (530)
T ss_pred -----cc--ccCCchhhhhhHHHHHHHhhcC
Confidence 11 5577889999999999998864
No 2
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=99.97 E-value=8.8e-32 Score=243.56 Aligned_cols=124 Identities=43% Similarity=0.696 Sum_probs=91.7
Q ss_pred ccccccccCcccccCcccccccccCC---CCcEEEEEecceeeecEEEEeeccc----ccCCCCeEEEEeeccCCCCCce
Q 006838 235 HNKEAKGASNILGKDHNKYLRNPCSV---AGKFVVIELGEETLVDTVKIANFEH----YSSNFKEFELSGSLSYPTEVWS 307 (629)
Q Consensus 235 sn~eakgasnIL~~nkD~YMLnPCsa---~~kfVVIELcEeI~V~~I~IANfE~----fSS~pKdF~VsgS~~YPt~~W~ 307 (629)
+|++++++++||.+|+|+||++|||+ +..||+|+|+++|.|++|+|.|++. ++|+||+|+|+|+..+|+.+|.
T Consensus 1 ~~~~~~~p~~il~~~~~~~~~g~Cw~~~g~~~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~ 80 (135)
T PF07738_consen 1 HNPEAKPPSNILSPDKDSYMPGPCWAFEGSKGWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWV 80 (135)
T ss_dssp -EEE---GGGGGSS-----STT-SEEEETT-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--E
T ss_pred CCcccCChhheECCCCCcccCCccCccCCCceEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEeccccccee
Confidence 47889999999999999999999965 4579999999999999999999999 9999999999999999999999
Q ss_pred eeEEEEe-eccccceeeeCCCCc--eEEEEEEEEeeccCCcceeeeeEEEEecc
Q 006838 308 PLGKFVA-TNVKQLQSFKLPEPK--WVRYLKLNLLSHYGSEFYCTLSVVEVYGV 358 (629)
Q Consensus 308 ~LG~F~a-~N~R~~Q~F~L~~~~--w~RYLKle~LSHyGsE~YC~LS~vrVyG~ 358 (629)
.||+|++ .+.+..|+|+|+.+. ++|||||+|+||||+++||+||+|||||.
T Consensus 81 ~LG~f~y~~~~~~~QtF~l~~~~~~~~~~i~l~i~sN~G~~~ytclyr~rVhG~ 134 (135)
T PF07738_consen 81 LLGEFEYDSDGNSIQTFPLPRPPRQPVRYIKLRILSNHGNEEYTCLYRFRVHGE 134 (135)
T ss_dssp EEEEEE--TTS-SEEEEE-SS--S--EEEEEEEE--BSS-SSEEEE-EEEEEEE
T ss_pred eeceEEEcCCcCccEeeeeccCchhcCcEEEEEEEcCCCCCceEEEEEEEEEee
Confidence 9999996 667889999999987 99999999999999999999999999997
No 3
>KOG2687 consensus Spindle pole body protein, contains UNC-84 domain [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.6e-18 Score=184.25 Aligned_cols=141 Identities=22% Similarity=0.285 Sum_probs=121.0
Q ss_pred CCCCCcccccccccCceEeec-c------------------ccccccCcccccCcccccccccCC---CCcEEEEEecce
Q 006838 215 DPDGTEYNYASAMKGAKLVAH-N------------------KEAKGASNILGKDHNKYLRNPCSV---AGKFVVIELGEE 272 (629)
Q Consensus 215 ~p~g~~~NYAS~d~GAkIl~s-n------------------~eakgasnIL~~nkD~YMLnPCsa---~~kfVVIELcEe 272 (629)
++.-.+.|||.++.||.|+.+ + -..+.|..||.+|. -++.||+ ++++|+|+|+..
T Consensus 237 ~d~v~~~DYAl~s~GAsI~~~~S~~y~~~~~~~~~~~i~~~~~~~~P~vil~~~v---~PG~Cw~FkGsrg~v~V~La~~ 313 (414)
T KOG2687|consen 237 EDGVGKVDYALESGGASIDSECSETYKSDKALLFWNGISLWNHHQPPRVILQPNV---SPGECWAFKGSRGYVTVRLARF 313 (414)
T ss_pred ccccCcchhhhhcCCcEEEeecccccccCCcceEeeccccccccCCCceEecCCC---CccceeeecCCceEEEEEecce
Confidence 444457889999999999998 2 45677888888887 7888998 689999999999
Q ss_pred eeecEEEEeec-------ccccCCCCeEEEEeeccCCCCCceeeEEEEeecc-ccceeeeCCCCc--eEEEEEEEEeecc
Q 006838 273 TLVDTVKIANF-------EHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNV-KQLQSFKLPEPK--WVRYLKLNLLSHY 342 (629)
Q Consensus 273 I~V~~I~IANf-------E~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~N~-R~~Q~F~L~~~~--w~RYLKle~LSHy 342 (629)
|.+..|+|.|. -..||+||||.|+|+..--+++-.+||+|++++. ..+|+|.+++.. .++.|+|+|.|||
T Consensus 314 Iip~avTleHv~~sVspd~~~sSAPKdf~V~g~~~~~~~~~~LLG~ftYD~d~~~~QtF~~q~~~~~~~~~V~l~~~SN~ 393 (414)
T KOG2687|consen 314 IIPSAVTLEHVPKSVSPDGNISSAPKDFDVFGSTQDCTEEEVLLGEFTYDLDGSPIQTFSLQHDTSAPFKTVELRFNSNH 393 (414)
T ss_pred EEeeeeeeecccceecCCCCcCcCCcceEEEeecccCCcCceeeEEEEECCCCCcceEEeccCCCccccceEEEEEecCC
Confidence 99999999996 2479999999999998722455589999999987 566999999874 5999999999999
Q ss_pred CCc-ceeeeeEEEEeccc
Q 006838 343 GSE-FYCTLSVVEVYGVD 359 (629)
Q Consensus 343 GsE-~YC~LS~vrVyG~t 359 (629)
|+. |+| ||+|||||..
T Consensus 394 G~p~fTC-iYR~RVhG~~ 410 (414)
T KOG2687|consen 394 GHPKFTC-IYRFRVHGRP 410 (414)
T ss_pred CCCCceE-EEEEEEcCcc
Confidence 995 999 7999999974
No 4
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=98.65 E-value=4.9e-07 Score=80.47 Aligned_cols=111 Identities=18% Similarity=0.295 Sum_probs=86.3
Q ss_pred cccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeeccc--ccCCCCeEEEEeeccCCCCCceeeEE------
Q 006838 240 KGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEH--YSSNFKEFELSGSLSYPTEVWSPLGK------ 311 (629)
Q Consensus 240 kgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~--fSS~pKdF~VsgS~~YPt~~W~~LG~------ 311 (629)
-.|.++ ..|++.|--..=.....|+.|.|.+.+.|..|.|..... .+..++.|+|.+|.. ...|..+.+
T Consensus 24 ~~~~~~-dg~~~t~W~~~~~~~~~wi~vDL~~~~~i~~v~i~~~~~~~~~~~~~~~~i~~s~d--g~~W~~~~~~~~~~~ 100 (143)
T cd00057 24 WEASRA-RLNSDNAWTPAVNDPPQWLQVDLGKTRRVTGIQTQGRKGGGSSEWVTSYKVQYSLD--GETWTTYKDKGEEKV 100 (143)
T ss_pred CCcCee-ecCCCCcccCCCCCCCceEEEECCCCEEEEEEEEccCCCCCccCeeEEEEEEEECC--CCCEeEEEcCCcEEE
Confidence 456666 666655544332123569999999999999999987654 688899999999985 678999885
Q ss_pred EEeecc-ccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEec
Q 006838 312 FVATNV-KQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYG 357 (629)
Q Consensus 312 F~a~N~-R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG 357 (629)
|...+. ...+.+.++.|.-+|||||.+++..| +.| | .|+|||
T Consensus 101 ~~~~~~~~~~~~~~l~~pv~aRyvRl~~~~~~~--~~~-l-e~evyG 143 (143)
T cd00057 101 FTGNSDGSTPVTNDFPPPIVARYIRILPTTWNG--NIS-L-RLELYG 143 (143)
T ss_pred EeCCcCCCeEEEEeCCCCEEEEEEEEEEeecCC--ccE-E-EEEEcC
Confidence 443322 45789999888999999999999888 555 7 999998
No 5
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=98.20 E-value=3e-05 Score=66.46 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=84.9
Q ss_pred ccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeecccccC-CCCeEEEEeeccCCCCCceeeEEE--Eeecc
Q 006838 241 GASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSS-NFKEFELSGSLSYPTEVWSPLGKF--VATNV 317 (629)
Q Consensus 241 gasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS-~pKdF~VsgS~~YPt~~W~~LG~F--~a~N~ 317 (629)
.+.+++..|...+--..=.....|++|.|.+...|..|.|....-... .|+.|+|.+|.. ...|+.++.- ...+.
T Consensus 16 ~~~~~~Dg~~~t~W~~~~~~~~~~i~idl~~~~~i~~i~i~~~~~~~~~~~~~~~i~~s~d--g~~w~~~~~~~~~~~~~ 93 (129)
T PF00754_consen 16 PASNAFDGDPSTAWCSNWDDSPQWIQIDLGKPYTISGISIQFRNDGNNGRPKSFKIEYSND--GSNWTTVASQFYGNTNS 93 (129)
T ss_dssp GGGGGGSSSTTSSEEESSSSSTEEEEEEEEEEEEEEEEEEEEESSTTTEEEEEEEEEEESS--SSSEEEEEETEEEESSS
T ss_pred hHHheEeCCCCCEEECCCCCCCceEEEEeeeeEecceeeecccccccceeeeeeeeeeecc--cccccccccceeeccCC
Confidence 477788777544443322445689999999999999999999866665 999999999973 4799999984 33445
Q ss_pred ccceeeeCCCCceEEEEEEEEeeccCCcceeeee
Q 006838 318 KQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLS 351 (629)
Q Consensus 318 R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS 351 (629)
...+...+..+.-+|||||.+++..|...+|.|.
T Consensus 94 ~~~~~~~~~~~~~~ryiri~~~~~~~~~~~~~i~ 127 (129)
T PF00754_consen 94 GSVVTISFFPPVKARYIRITVTSWNGNNGWVSIA 127 (129)
T ss_dssp SSSEEEEEEEEEEEEEEEEEEEEEESCSSEEEEE
T ss_pred CceEEEEeCCCeEEEEEEEEEEEECCCCceEEEE
Confidence 5567778888899999999999977887777553
No 6
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=97.76 E-value=6.7e-05 Score=74.79 Aligned_cols=121 Identities=21% Similarity=0.342 Sum_probs=94.0
Q ss_pred cccccCcccccCc-cccc--ccccCCCCcEEEEEecceeeecEEEEeecc-cccCCCCeEEEEeeccCCCCCceeeEEEE
Q 006838 238 EAKGASNILGKDH-NKYL--RNPCSVAGKFVVIELGEETLVDTVKIANFE-HYSSNFKEFELSGSLSYPTEVWSPLGKFV 313 (629)
Q Consensus 238 eakgasnIL~~nk-D~YM--LnPCsa~~kfVVIELcEeI~V~~I~IANfE-~fSS~pKdF~VsgS~~YPt~~W~~LG~F~ 313 (629)
..=.|.|||.+++ |.-- ...+..+..|+|++|...-.|++|+++=|| -.-.++|+|+|+|... .+.+..|=.=-
T Consensus 17 ~~y~P~NIlvd~P~dqsSRWss~~~~~~QyiiLkL~~paiV~sItFGKy~K~HvCNlK~fkv~gG~~--~~~m~ell~~g 94 (199)
T PF06588_consen 17 SNYHPENILVDKPNDQSSRWSSSSNSPPQYIILKLESPAIVKSITFGKYEKPHVCNLKKFKVYGGMD--EENMIELLHGG 94 (199)
T ss_pred CccChhheeecCCCCccccccCCCCCCCcEEEEEcCCCeEEEEEeccccccCccccceeeEEeccCC--HHHHHHHHhhh
Confidence 3345889998654 2222 222333567999999999999999999997 4889999999999874 35555555555
Q ss_pred eeccccceeeeCCCC--------ceEEEEEEEEeeccCCcceeeeeEEEEeccch
Q 006838 314 ATNVKQLQSFKLPEP--------KWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDA 360 (629)
Q Consensus 314 a~N~R~~Q~F~L~~~--------~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t~ 360 (629)
-+|-....+|+|... --+|||||.=+.-||..|-+.|--|.+.|.+-
T Consensus 95 LkND~~~Etf~l~~~~~~~~~~~fP~rYIKIvPL~swGpsFNfSIWyVeL~Gi~d 149 (199)
T PF06588_consen 95 LKNDSNPETFNLKHKTNNGIENYFPCRYIKIVPLQSWGPSFNFSIWYVELSGIDD 149 (199)
T ss_pred ccCCCCCceEEeEEecCCcccceeeeeeeEEechhhcCCCCceEEEEEEEeccCC
Confidence 567667788887532 26899999999999999999999999999985
No 7
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=97.25 E-value=0.00063 Score=75.89 Aligned_cols=123 Identities=21% Similarity=0.316 Sum_probs=90.8
Q ss_pred cccccCcccccCc-ccccccccCC--CCcEEEEEecceeeecEEEEeecc-cccCCCCeEEEEeeccCCCCCceeeEEEE
Q 006838 238 EAKGASNILGKDH-NKYLRNPCSV--AGKFVVIELGEETLVDTVKIANFE-HYSSNFKEFELSGSLSYPTEVWSPLGKFV 313 (629)
Q Consensus 238 eakgasnIL~~nk-D~YMLnPCsa--~~kfVVIELcEeI~V~~I~IANfE-~fSS~pKdF~VsgS~~YPt~~W~~LG~F~ 313 (629)
.+=.|.|||..|+ |..-+=-|+. +..|+|+.|...-+|.+|++.-|+ .+=+++|+|+|+|+..- ..-..+|- =-
T Consensus 20 s~y~P~NIl~d~P~d~NSRWS~~~N~~~QYiiLKl~~~aLV~~ITFGKy~k~HvcNlKkf~v~ggR~~-~~m~elL~-~G 97 (723)
T KOG2437|consen 20 STYLPENILVDKPNDQNSRWSSESNYPPQYLILKLERPALVQNITFGKYEKTHVCNLKKFKVFGGRNE-ENMTELLS-SG 97 (723)
T ss_pred ccccccceeeCCCCCcccccCCCCCCCceeEEEEcCCceeEEEEeccccccccccchhheEEecccch-hhhHHHHh-hh
Confidence 4456888998763 4444444544 568999999999999999999997 58899999999998642 11112221 11
Q ss_pred eeccccceeeeCCCC-----ceEEEEEEEEeeccCCcceeeeeEEEEeccchHH
Q 006838 314 ATNVKQLQSFKLPEP-----KWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIE 362 (629)
Q Consensus 314 a~N~R~~Q~F~L~~~-----~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t~vE 362 (629)
..|--+-.+|+|... .-+|||||+=|--||.+|--.|--|..+|.+-.+
T Consensus 98 LkNDSn~ETF~L~~K~~e~~f~c~YiKIvPL~Awg~~Fn~SiWyVeL~Gidd~~ 151 (723)
T KOG2437|consen 98 LKNDSNKETFTLKHKIDEQMFPCRYIKIVPLLAWGPSFNFSIWYVELSGIDDPD 151 (723)
T ss_pred cCCccccceeeeEEeeccceeeeeeEEEEEHhhcCCccceEEEEEEeecCCCHH
Confidence 234445577887533 2589999999999999998889999999998554
No 8
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=97.00 E-value=0.011 Score=56.16 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=97.1
Q ss_pred ccccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEe-ec-ccccCCCCeEEEEeeccCCCCCceeeEEEEe
Q 006838 237 KEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIA-NF-EHYSSNFKEFELSGSLSYPTEVWSPLGKFVA 314 (629)
Q Consensus 237 ~eakgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IA-Nf-E~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a 314 (629)
+.--|..+++.+|.+.|=-.--. ..+|+.|++.+.+.|..|.|. ++ .=-|=+|+.+.|++-..+ .....+.+.+-
T Consensus 15 k~g~gv~~L~D~~~~TyWQSDg~-qPH~I~i~f~k~~~i~~l~i~vd~~~DeSYtP~~I~v~~G~~~--~dl~e~~~v~l 91 (139)
T cd08366 15 KPGNGVDQLRDDSLDTYWQSDGP-QPHLINIQFSKKTDISAVALYLDYKLDESYTPSKISIRAGTSP--HDLQEVRTVEL 91 (139)
T ss_pred CCCCCHHHhcCCCCCccCCCCCC-CCEEEEEEecCCcEEEEEEEEEccCCCCCCCCEEEEEEEECCc--CchhheEEEEc
Confidence 44457888888999888777433 468999999999999998773 44 556889999999987754 56677888888
Q ss_pred eccccceeeeCCC-----CceEEEEEEEEeeccCCcceeeeeEEEEec
Q 006838 315 TNVKQLQSFKLPE-----PKWVRYLKLNLLSHYGSEFYCTLSVVEVYG 357 (629)
Q Consensus 315 ~N~R~~Q~F~L~~-----~~w~RYLKle~LSHyGsE~YC~LS~vrVyG 357 (629)
++..++..++|.+ +..+.||+|.++++|-+.-=|-+-.+||||
T Consensus 92 ~~p~Gwv~i~l~~~~~~~~~~~~~iqi~I~~nh~nG~DthiR~iki~g 139 (139)
T cd08366 92 EEPNGWVHIPLEDNRDGKPLRTFFLQIAILSNHQNGRDTHIRQIKVYG 139 (139)
T ss_pred CCCCEEEEEEccCCCCCCeeEEEEEEEEEecccCCCCCcceeeeEecC
Confidence 8888888888864 368889999999999999999999999998
No 9
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=96.85 E-value=0.015 Score=54.98 Aligned_cols=115 Identities=10% Similarity=0.082 Sum_probs=89.1
Q ss_pred ccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEee-cccccCCCCeEEEEeeccCCCCCceeeEEEEee-ccc
Q 006838 241 GASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIAN-FEHYSSNFKEFELSGSLSYPTEVWSPLGKFVAT-NVK 318 (629)
Q Consensus 241 gasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IAN-fE~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~-N~R 318 (629)
|++.++.+|.|.|--.--.+...|+.|++...+.|..|.|.- ..=-|=+|+.+.|++-..+- .=..+...+-. +..
T Consensus 15 gv~~L~D~~~~TYWQSDG~q~pH~I~i~f~~~v~i~~l~i~v~~~DeSYtPs~I~I~~G~~~~--dL~e~~~v~l~~~~~ 92 (131)
T cd08667 15 DIDRMTDGETSTYWQSDGSARSHWIRLKMKPDVVLRHLSIAVAATDQSYMPQQVTVSVGRSAS--SLQEVRDVHIPSNVT 92 (131)
T ss_pred hhHHhhcCCCCccCccCCCCCCeEEEEEecCCeEEEEEEEEEcCCCCCcCCcEEEEEecCCHh--hheeeEEEEcCCCCc
Confidence 899999999999988776654679999999999999988765 35568899999999865431 11234444433 233
Q ss_pred cceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEec
Q 006838 319 QLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYG 357 (629)
Q Consensus 319 ~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG 357 (629)
++..+....+..+.||+|.++++|-+.-=|-|-.+||||
T Consensus 93 Gwv~l~~~~~~~~~~iqI~I~~nhqnG~DthIRgiki~G 131 (131)
T cd08667 93 GYVTLLENANISYLVVQINIKRCHSDGCDTRIHGLKTIG 131 (131)
T ss_pred eeEEEEcCCceEEEEEEEEeHHhccCCccceeeEEEEcC
Confidence 455555555678899999999999999999999999998
No 10
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=96.56 E-value=0.04 Score=52.03 Aligned_cols=114 Identities=9% Similarity=0.081 Sum_probs=89.4
Q ss_pred ccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEe-ecccccCCCCeEEEEeeccCCCCCceeeEEEEeecccc
Q 006838 241 GASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIA-NFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQ 319 (629)
Q Consensus 241 gasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IA-NfE~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~N~R~ 319 (629)
|++.++.+|.+.|--.--..+..|+.+++.+.+.|..+.|. .+.=-|=+|+.+.|+|-..+ ..=..+.+.+-.+..+
T Consensus 15 gv~~L~D~~~~tyWQSdG~qphh~i~l~f~k~v~i~~l~i~~~~~DeSYtP~~I~V~~G~~~--~dL~e~~~v~l~~p~G 92 (129)
T cd08159 15 PVSRLTDGNYDTYWQSDGSQGSHWIRLFMKKDVLIRVLAIFVDMADSSYMPSLVVVYGGHSP--SDLRELKDVNIRPSNG 92 (129)
T ss_pred cHHHhcCCCCCccCCCCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCcCCcEEEEEecCCH--HHhheeEEEEecCCCc
Confidence 99999999999998877776778999999999999998884 35557789999999987653 1124455555555555
Q ss_pred ceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEe
Q 006838 320 LQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVY 356 (629)
Q Consensus 320 ~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVy 356 (629)
...+....+..+.||+|.++++|-+.-=|-|-.+|||
T Consensus 93 wv~i~~~~~~~~~~iqI~I~~nhqnG~DthiRgikI~ 129 (129)
T cd08159 93 WVALLEDDTLKCPYIEIRIKRCRSDGIDTRIRGLRLL 129 (129)
T ss_pred eEEEEcCCcEEEEEEEEEEHHhccCCccceeeEEEeC
Confidence 5555444467899999999999999988988888887
No 11
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=96.31 E-value=0.046 Score=54.52 Aligned_cols=122 Identities=11% Similarity=0.164 Sum_probs=86.7
Q ss_pred ccccccccCccc-ccCcccccccccCCCCcEEEEEecceeeecEEEEe--ecccccCCCCeEEEEeeccCCCCCceeeEE
Q 006838 235 HNKEAKGASNIL-GKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIA--NFEHYSSNFKEFELSGSLSYPTEVWSPLGK 311 (629)
Q Consensus 235 sn~eakgasnIL-~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IA--NfE~fSS~pKdF~VsgS~~YPt~~W~~LG~ 311 (629)
+.+.--|..+.| .+|.+.|--.--. ..+|+.|++.+.+.|..|.|- +..=-|=+|+.+.|++-... ..+..+..
T Consensus 40 S~K~g~gv~~~LrD~~~~TyWQSDG~-qpH~I~i~f~k~v~I~~l~iyvd~~~DeSYtPs~I~V~aG~~~--~dl~e~~~ 116 (193)
T PF03256_consen 40 SCKPGFGVAELLRDGSTETYWQSDGS-QPHWITIQFHKRVIISSLSIYVDYKQDESYTPSKISVRAGNSP--HDLQEVKT 116 (193)
T ss_dssp --BTTBSCHGHCHSS-TT--EE--SS-SSEEEEEEEEEEEEE-EEEEEEEHHHHGGGSEEEEEEEEESST--TT-EEEEE
T ss_pred cCCCCCCchheeeCCChhHhhccCCC-CCEEEEEEEcCCcEEEEEEEEEccCcCCCCCceEEEEEEeCCc--CceEEEEE
Confidence 334445566577 7889999887333 358999999999999999883 23445569999999997754 56788888
Q ss_pred EEeeccccceeeeCCCC----ceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 312 FVATNVKQLQSFKLPEP----KWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 312 F~a~N~R~~Q~F~L~~~----~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
.+-.+..++..++|... ..+.||+|.++++|-+.-=|-|-.+||||..
T Consensus 117 v~l~~p~GWv~i~l~~~~~~~~r~~~iqI~I~~nhq~G~DthiR~iki~gp~ 168 (193)
T PF03256_consen 117 VELEEPNGWVHIPLLDNRGNPLRCFFIQIAILSNHQNGKDTHIRGIKIYGPR 168 (193)
T ss_dssp EEECC-EEEEEEE-BSTTTSBEEEEEEEEEEEEECCC-SS-EESEEEEEEE-
T ss_pred EEecCCCccEEEEeCCCCCCcEEEEEEEEEEEecccCCCCCceeeEEEECCC
Confidence 88888888888887543 3677999999999999999999999999985
No 12
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=95.91 E-value=0.07 Score=50.64 Aligned_cols=120 Identities=10% Similarity=0.121 Sum_probs=83.1
Q ss_pred cccccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeec-ccccCCCCeEEEEeeccCCCCCceeeEEEEe
Q 006838 236 NKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANF-EHYSSNFKEFELSGSLSYPTEVWSPLGKFVA 314 (629)
Q Consensus 236 n~eakgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANf-E~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a 314 (629)
++..-+++.++.+|.+.|--.--++...|+.|++.+.+.|..+.|.=. +=-|=+|..+.|.|-..+-.-. +.+-.-+.
T Consensus 10 Ssn~~~~~~L~D~~~~tyWQSdG~q~pH~I~i~f~k~v~I~~l~i~v~~~DeSYtPs~I~V~~G~~~~dL~-~e~~~V~~ 88 (131)
T cd08665 10 SSNPHRANKLTDGNPKTYWESNGSTGSHYINIHMHRGVVIRQLYMLVASEDSSYMPARVVVLGGDSPSCIT-TELNAVNV 88 (131)
T ss_pred EcCcccHHHhhcCCCCceEccCCCCCCeEEEEEECCCcEEEEEEEEecCCCCCcCCeeEEEEecCCHHHhh-heeEEEEc
Confidence 333447899999999999887766556899999999999999988664 3467799999999865431100 00111111
Q ss_pred eccccceeeeCCCC-ceEEEEEEEEeeccCCcceeeeeEEEEec
Q 006838 315 TNVKQLQSFKLPEP-KWVRYLKLNLLSHYGSEFYCTLSVVEVYG 357 (629)
Q Consensus 315 ~N~R~~Q~F~L~~~-~w~RYLKle~LSHyGsE~YC~LS~vrVyG 357 (629)
...-+.-.. +.+. .+..||.|.++++|-+.-=|-+-.++|||
T Consensus 89 ~~~~g~v~l-l~~~~~~~~~iqI~I~~nhqnG~DthIRgikI~G 131 (131)
T cd08665 89 SPTASRVVL-LENMTRFWPIIQIRIKRCQQGGIDTRVRGLEILG 131 (131)
T ss_pred cCCcceEEE-cccCcccceEEEEEEhhhcccCccceeeEEEecC
Confidence 111111111 3222 34589999999999999999999999998
No 13
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=95.66 E-value=0.13 Score=46.94 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=63.5
Q ss_pred CcEEEEEecceeeecEEEEee-cccccCCCCeEEEEeeccCCCCCceee-----EEEEee-ccccceeeeCCCCceEEEE
Q 006838 262 GKFVVIELGEETLVDTVKIAN-FEHYSSNFKEFELSGSLSYPTEVWSPL-----GKFVAT-NVKQLQSFKLPEPKWVRYL 334 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IAN-fE~fSS~pKdF~VsgS~~YPt~~W~~L-----G~F~a~-N~R~~Q~F~L~~~~w~RYL 334 (629)
..|+.|-|-+...|..|.+.= .+ ..+-++.|.+ -|. ....|..+ +.|... +....+...++.|.-+|||
T Consensus 44 ~~wlqvDLg~~~~v~~i~~qg~~~-~~~~~~~~~~-~s~--dg~~W~~~~~~~~~~f~gn~d~~~~~~~~~~~~v~ARyv 119 (139)
T smart00231 44 PPWIQVDLGRTRTVTGVITGGRHG-DGDGVTYKLL-YSD--DGNNWTTYKDGNSKVFPGNSDAGTVVVNEFPPPIVARYI 119 (139)
T ss_pred CceeEeeccCcEEEEEEEecccCC-CCcEEEEEEE-EEe--CCCCEeEEeCCCeEEEeCccCCCceEEEecCCCEEEEEE
Confidence 359999999999999998863 22 3344556666 344 24579876 467664 2455677788888889999
Q ss_pred EEEEeeccCCcceeeeeEEEEec
Q 006838 335 KLNLLSHYGSEFYCTLSVVEVYG 357 (629)
Q Consensus 335 Kle~LSHyGsE~YC~LS~vrVyG 357 (629)
||..++.++ ..| .+++|||
T Consensus 120 Ri~p~~~~~--~~~--~r~ElyG 138 (139)
T smart00231 120 RILPTGWNG--NII--LRVELLG 138 (139)
T ss_pred EEEEeEcCC--CcE--EEEEEEc
Confidence 999997664 366 5999998
No 14
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=95.44 E-value=0.44 Score=49.10 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=27.0
Q ss_pred CCCCCchhHHHHHH----HHHHHHhhhhhHHHHHHHHHHHHHhhhhhH
Q 006838 451 IGRIPGDTVLRILM----QKVKSLEQNLSVLEDYIKELNQRQQDVFPE 494 (629)
Q Consensus 451 ~~r~~gdSVlKiLm----qKvksLE~N~Slle~YiEeln~ry~~~f~~ 494 (629)
.+|..|+.+=+..| +.++-|-.+..++-.|++|+..+.-..-++
T Consensus 25 ~skstgt~s~~~q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~ 72 (230)
T PF03904_consen 25 NSKSTGTQSQKTQMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKN 72 (230)
T ss_pred hhhccCCCcHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445543333333 567777778888888888888777433333
No 15
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.57 E-value=0.41 Score=48.36 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhh-hhhcccchhHHHHHHHHH
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQ-ANLESKELAVLSVSLFFA 580 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q-~~mEnK~laVl~isl~f~ 580 (629)
..||+.++.++..|+.++..++++. -...-.+-+|+++.++||
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllG 188 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLG 188 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 3334444444444444443333221 122233334555555544
No 16
>PF03561 Allantoicase: Allantoicase repeat; InterPro: IPR015908 Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions. While purine degradation converges to uric acid in all vertebrates, its further degradation varies from species to species. Uric acid is excreted by birds, reptiles, and some mammals that do not have a functional uricase gene, whereas other mammals produce allantoin. Amphibians and microorganisms produce ammonia and carbon dioxide using the uricolytic pathway. Allantoicase performs the second step in this pathway catalyzing the conversion of allantoate into ureidoglycolate and urea. allantoate + H(2)0 = (S)-ureidoglycolate + urea The structure of allantoicase is best described as being composed of two repeats (the allantoicase repeats: AR1 and AR2), which are connected by a flexible linker. The crystal structure, resolved at 2.4A resolution, reveals that AR1 has a very similar fold to AR2, both repeats being jelly-roll motifs, composed of four-stranded and five-stranded antiparallel beta-sheets []. Each jelly-roll motif has two conserved surface patches that probably constitute the active site []. The mammalian proteins matched by this entry are thought to be non-functional as mammals do not appear to possess allantoicase activity [].; GO: 0004037 allantoicase activity; PDB: 1O59_A 1SG3_A.
Probab=94.57 E-value=0.55 Score=45.54 Aligned_cols=123 Identities=20% Similarity=0.301 Sum_probs=75.8
Q ss_pred CceEeecccc-ccccCcccccCccc----------ccc------cccCCCCcEEEEEecceeeecEEEEeecccccCCCC
Q 006838 229 GAKLVAHNKE-AKGASNILGKDHNK----------YLR------NPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFK 291 (629)
Q Consensus 229 GAkIl~sn~e-akgasnIL~~nkD~----------YML------nPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~pK 291 (629)
|++|++.+.+ =-.++|+|.+.... -|. .-.....-|+||.|.-.-.|+.|+|---=|=-..|-
T Consensus 1 Gg~vv~~SD~~f~~~~nll~p~~~~~~~~~f~~~g~~~DGWETrRrr~~g~DW~IikLg~~G~I~~i~IDT~~F~GN~P~ 80 (152)
T PF03561_consen 1 GGRVVACSDEFFAPAENLLKPGRPVFKPGKFDENGKMMDGWETRRRRDPGHDWAIIKLGAPGVIRGIEIDTAHFKGNYPP 80 (152)
T ss_dssp T-EEEEES--SCC-GGGCC-SSS-S----------SGGCSEE--SS-STT-EEEEEE-SSSCEEEEEEEE-TT-SSSB-S
T ss_pred CCEEEEEcccccccHHHhcCCCCCcccccccccccccccceeeccccCCCCCEEEEECCCCCEEEEEEEecccccCCCCC
Confidence 7788887643 34577799877666 221 111122459999999999999998854334445678
Q ss_pred eEEEEeecc----------CCCCCceeeEEEEeeccccceeeeC--CCCceEEEEEEEEeeccCCcceeeeeEEEEec
Q 006838 292 EFELSGSLS----------YPTEVWSPLGKFVATNVKQLQSFKL--PEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYG 357 (629)
Q Consensus 292 dF~VsgS~~----------YPt~~W~~LG~F~a~N~R~~Q~F~L--~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG 357 (629)
.++|.|... .....|..|=..+.-+....+.|.+ ....-+-+|||.+.--=| |+++||||
T Consensus 81 ~~sv~~~~~~~~~~~~~~~~~~~~W~~llp~~~l~~~~~h~f~~~~~~~~~~THvRl~i~PDGG------IaRlRv~G 152 (152)
T PF03561_consen 81 SVSVEGAYLPDDDDPEIIELDSEEWVELLPRTKLGPDKRHYFKLEINNEKPFTHVRLNIYPDGG------IARLRVYG 152 (152)
T ss_dssp EEEEEEE--SS----S---TT-TTEEEEEEEEE--TT-EEEEE-TECECS-BSEEEEEEESS-E------ESEEEEEE
T ss_pred EEEEEEEEcCCCcccccccccCCCceEeecceEcCCCcccEeccccCCCCceeEEEEEEeCCCC------EEEEEEcC
Confidence 888887642 2446899998888877777788984 455677889998876555 79999998
No 17
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=94.43 E-value=0.5 Score=44.94 Aligned_cols=110 Identities=14% Similarity=0.176 Sum_probs=77.9
Q ss_pred ccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEee-cccccCCCCeEEEEeeccCCCCCceeeEEEEeecccc
Q 006838 241 GASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIAN-FEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQ 319 (629)
Q Consensus 241 gasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IAN-fE~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~N~R~ 319 (629)
|++.++.+|.|.|--.--..+..|+.|++.+.+.|..|.|.= +.=-|=+|+.+.|+|-..+- .|-++..-+...
T Consensus 16 gv~~L~D~~~~tyWQSDG~q~pH~I~i~f~k~v~i~~l~l~vd~~DeSYtP~~I~V~~G~~~~-----dL~e~~~v~v~~ 90 (131)
T cd08365 16 DASRLTDGNTSTYWQSDGSQGSHWIRLKMKPDVLVRHLSLAVDATDSSYMPQRVVVAGGRSAS-----NLQELRDVNIPP 90 (131)
T ss_pred hHHHhhcCCCCceEccCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCCCCcEEEEEecCCHH-----HheeEEEEEccC
Confidence 999999999999987776655689999999999999988854 55568899999999865431 111222221110
Q ss_pred --ceeeeCCC--CceEEEEEEEEeeccCCcceeeeeEEEE
Q 006838 320 --LQSFKLPE--PKWVRYLKLNLLSHYGSEFYCTLSVVEV 355 (629)
Q Consensus 320 --~Q~F~L~~--~~w~RYLKle~LSHyGsE~YC~LS~vrV 355 (629)
...+.|.+ +..+.||+|.++++|-+.-=|-|-.+||
T Consensus 91 ~~~g~v~ll~~~~~~~~~iqI~I~~nhqnG~DthiRgikI 130 (131)
T cd08365 91 SVTGYVTLLEDATISQPYIEIRIKRCRSDGIDTRIHGLRI 130 (131)
T ss_pred CCceeEEEccCCceeeEEEEEEEHHHccCCccceeeEEEe
Confidence 11122211 3467999999999999988887666665
No 18
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=94.08 E-value=0.83 Score=43.71 Aligned_cols=119 Identities=8% Similarity=0.116 Sum_probs=83.9
Q ss_pred eeccccccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEee-cccccCCCCeEEEEeeccCCCCCceeeEE
Q 006838 233 VAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIAN-FEHYSSNFKEFELSGSLSYPTEVWSPLGK 311 (629)
Q Consensus 233 l~sn~eakgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IAN-fE~fSS~pKdF~VsgS~~YPt~~W~~LG~ 311 (629)
+++++.--|++.++.+|.|.|--.--+....|+.|++.+.+.|..+.|.- +.--|=+|+.+.|++-. + ..-..+-.
T Consensus 12 vSS~k~g~gv~~L~D~~~~tyWQSdG~qgpH~I~l~f~~~v~i~~l~i~v~~~DeSYtP~~I~V~~G~-~--~dL~ei~~ 88 (134)
T cd08666 12 VSSYTDDFNVSCLTDGDPDTYWESDGSQGQHWIRLHMKKGTIIKKLLLTVDATDDNYMPKRVAVYGGE-G--DNLKKLND 88 (134)
T ss_pred EEcCCCCCCHHHhccCCCCccEecCCCCCCeEEEEEECCCcEeeEEEEEecCCCCCcCCcEEEEEecC-c--cChhheEE
Confidence 44556566889999999999998865554689999999999999999865 56678899999999876 3 22222332
Q ss_pred EEeeccccceeeeCCCC--ceEEEEEEEEeeccCCcceeeeeEEEE
Q 006838 312 FVATNVKQLQSFKLPEP--KWVRYLKLNLLSHYGSEFYCTLSVVEV 355 (629)
Q Consensus 312 F~a~N~R~~Q~F~L~~~--~w~RYLKle~LSHyGsE~YC~LS~vrV 355 (629)
.+-... ......|-++ .++.||.|.++++|-+.-=|-+-.++|
T Consensus 89 V~i~~~-~~g~V~il~~~~~~~~~iqI~I~~nhqnG~DthIRgiKI 133 (134)
T cd08666 89 VSIDET-LIGDVCILEDMTTHLPVIEIRIKECKDEGIDVRIRGIKI 133 (134)
T ss_pred EEeCCC-CCCeEEEecCCceEeEEEEEEeHHhccCCccceeeEEEe
Confidence 222111 1122333233 467789999999999988887666665
No 19
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=93.95 E-value=0.76 Score=49.51 Aligned_cols=130 Identities=17% Similarity=0.300 Sum_probs=92.9
Q ss_pred CcccccccccCceEeeccccccc-cCcccccCccccc---------ccccCCCCcEEEEEecceeeecEEEEeecccccC
Q 006838 219 TEYNYASAMKGAKLVAHNKEAKG-ASNILGKDHNKYL---------RNPCSVAGKFVVIELGEETLVDTVKIANFEHYSS 288 (629)
Q Consensus 219 ~~~NYAS~d~GAkIl~sn~eakg-asnIL~~nkD~YM---------LnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS 288 (629)
..+|-|+...|++|+..+-+--+ +.|||.+..-++| +.|- .-|+||.|.-.=.|+.|+|---=|=-.
T Consensus 171 ~~~DLaa~~nGg~vl~~sD~~fg~~~Nli~pg~~~~mgDGWETrRrR~pG---~DW~IvkLg~~G~I~~i~VDT~~FkGN 247 (322)
T TIGR02961 171 ETVDLAALENGGVVVACSDAHFGHPDNLIGPGRGRNMGDGWETARRRDPG---NDWAIVRLGAPGEIERIEVDTAHFKGN 247 (322)
T ss_pred cccceeecccCCEEEEecccccCCHHHccCCCcccccccCcceeeccCCC---CCEEEEEcCCCCeEEEEEEeCCccCCC
Confidence 35899999999999998866554 5899998888888 2332 259999999999999988843323345
Q ss_pred CCCeEEEEeecc--CCC-------CCcee-eEEEEeeccccceeee--CCCCceEEEEEEEEeeccCCcceeeeeEEEEe
Q 006838 289 NFKEFELSGSLS--YPT-------EVWSP-LGKFVATNVKQLQSFK--LPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVY 356 (629)
Q Consensus 289 ~pKdF~VsgS~~--YPt-------~~W~~-LG~F~a~N~R~~Q~F~--L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVy 356 (629)
.|..++|.+... .|. .+|.. |+.-..... ..+.|. +....-+-.|||.+.=-=| ++++|||
T Consensus 248 ~P~~~si~a~~~~~~~~~~~~~~~~~W~~llp~t~l~~~-~~h~f~~~~~~~~~~THvRlnI~PDGG------vsRlRv~ 320 (322)
T TIGR02961 248 YPDSCSLQAADLEGGEDEQLITQSMFWVELLPRTKLGPD-TEHVFESSLAASGPVTHVRLNIIPDGG------VSRLRLW 320 (322)
T ss_pred CCCeEEEEEEeCCCCCchhhhccCCCceEcccccccCCC-cEeeecccccCCCceEEEEEEEECCCC------eeeEEEe
Confidence 566777877532 232 35886 555554433 446676 6555668899998876655 8999999
Q ss_pred cc
Q 006838 357 GV 358 (629)
Q Consensus 357 G~ 358 (629)
|.
T Consensus 321 G~ 322 (322)
T TIGR02961 321 GR 322 (322)
T ss_pred eC
Confidence 95
No 20
>PRK13257 allantoicase; Provisional
Probab=93.29 E-value=0.91 Score=49.17 Aligned_cols=131 Identities=16% Similarity=0.246 Sum_probs=93.6
Q ss_pred ccccccccCceEeeccccccc-cCcccccCcccccccc-cCC-----CCcEEEEEecceeeecEEEEeecccccCCCCeE
Q 006838 221 YNYASAMKGAKLVAHNKEAKG-ASNILGKDHNKYLRNP-CSV-----AGKFVVIELGEETLVDTVKIANFEHYSSNFKEF 293 (629)
Q Consensus 221 ~NYAS~d~GAkIl~sn~eakg-asnIL~~nkD~YMLnP-Csa-----~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF 293 (629)
+|-||...|++|++.+-+--+ +.|||.+...++|--= |.+ ..-|+||+|.-.-.|+.|+|---=|=-..|..+
T Consensus 184 iDLaa~~nGg~v~~~SD~hfg~~~Nll~Pg~~~~mgDGWETrRrR~pG~DW~iikLg~~G~I~~ieVDT~~FkGN~P~~~ 263 (336)
T PRK13257 184 VDLAALENGGRVVACSNQHFGSPSNLLLPGRGVNMGDGWETRRRREPGNDWVIVALAAPGVIRKIEVDTAHFKGNFPDRC 263 (336)
T ss_pred cchhhhhcCCEEEEecccccCCHHHeeCCCcccccccccccccccCCCCCEEEEEcCCCCEEEEEEEeCcccCCCCCCeE
Confidence 899999999999998876555 7889988776655321 111 135999999999999998884433445667888
Q ss_pred EEEeeccCC---------CCCceee-EEEEeeccccceeee--CCCCceEEEEEEEEeeccCCcceeeeeEEEEecc
Q 006838 294 ELSGSLSYP---------TEVWSPL-GKFVATNVKQLQSFK--LPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGV 358 (629)
Q Consensus 294 ~VsgS~~YP---------t~~W~~L-G~F~a~N~R~~Q~F~--L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~ 358 (629)
+|.|...-+ ..+|..| +.-..... ..+.|. +....-+-.|||.+.=-=| |+++||||.
T Consensus 264 si~~~~~~~~~~~~~~~~~~~W~~Llp~tkl~pd-~~h~F~~~~~~~~~~THvRl~I~PDGG------vsRlRv~G~ 333 (336)
T PRK13257 264 SLQAAYVEGGTDSSLITQSMFWPELLPEQKLQMD-TRHRFEAELAALGPVTHVRLNIFPDGG------VSRLRLWGK 333 (336)
T ss_pred EEEEEecCCCcccccccccCcCeEcccccccCCC-cEeeecccccCCCceEEEEEEEECCCC------ceeEEeeeE
Confidence 888865311 1248877 55554433 346787 6666668889998876655 899999997
No 21
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=93.16 E-value=0.38 Score=51.34 Aligned_cols=99 Identities=18% Similarity=0.289 Sum_probs=68.1
Q ss_pred CCcEEEEEecceeeecEEEEeec----ccccCCCCeEEEEeec--cCC----------C------CCceeeEEEEeec--
Q 006838 261 AGKFVVIELGEETLVDTVKIANF----EHYSSNFKEFELSGSL--SYP----------T------EVWSPLGKFVATN-- 316 (629)
Q Consensus 261 ~~kfVVIELcEeI~V~~I~IANf----E~fSS~pKdF~VsgS~--~YP----------t------~~W~~LG~F~a~N-- 316 (629)
...+++|+|.+...+..|.|.|| |.=.-.+|+++|+.-. .+| . .....|-......
T Consensus 81 ~~~~i~i~f~~~~~is~iRIWNYNks~~ds~~GvK~v~I~ldg~~i~~~~~~~irkapG~~~~D~~q~I~f~~~~k~~~~ 160 (329)
T PF14652_consen 81 KQHVITIRFPEPTSISGIRIWNYNKSREDSYRGVKDVKIYLDGKLIFPGEGFLIRKAPGNCHFDFGQTILFTDQDKISEN 160 (329)
T ss_pred CCEEEEEEeCCCceeeEEEEEcCCCCcchhhcCeEEEEEEECCEEeecccceEEeeccccCccccccEEEeecccccccc
Confidence 56789999999999999999997 4445569999998321 222 1 1223332222211
Q ss_pred c-------------ccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 317 V-------------KQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 317 ~-------------R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
. ...|.|..+.-.-.++|+|+++|.||..||.-|+-+++|...
T Consensus 161 sks~~~~~~~~s~~~~~~~~~~~~~p~g~~l~~~ilStWGd~~yvGLngiElfD~~ 216 (329)
T PF14652_consen 161 SKSPSLISNVNSEEQASQDYEIPELPCGFVLQIEILSTWGDPHYVGLNGIELFDEN 216 (329)
T ss_pred cccccccccccccccccccccccccccceEEEEEEeeccCCcceecccceEEEcCC
Confidence 0 012334444334689999999999999999999999999763
No 22
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=92.81 E-value=1 Score=42.67 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=61.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 006838 485 NQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQAN 564 (629)
Q Consensus 485 n~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~ 564 (629)
.+...++...+-+.|.++...|...|.+|. .+=+.++.-+.+...--..+..++..+.+|...++.+|+.|+..+..
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEG 114 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455667777788888888888877776543 44455666666666666777778888899999999999999999999
Q ss_pred hcccc
Q 006838 565 LESKE 569 (629)
Q Consensus 565 mEnK~ 569 (629)
||.|.
T Consensus 115 Le~ki 119 (126)
T PF07889_consen 115 LEGKI 119 (126)
T ss_pred HHHHH
Confidence 98875
No 23
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.77 E-value=2.2 Score=41.18 Aligned_cols=93 Identities=22% Similarity=0.367 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSF 539 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSs 539 (629)
.+-..+++..|+..+.-+++|+.++...+ .++++++......++..++++..+.+.-..+.+++.++. .
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~-------~ 151 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESEL----EKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ-------K 151 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 45566777777777777777777777777 444445555556667777777777777777887777776 3
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhh
Q 006838 540 RVNELIKENSMLRIDVEKVSSDQA 563 (629)
Q Consensus 540 qLd~l~reN~~LR~~Ve~v~~~q~ 563 (629)
.+.+..++...++.+++.++....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~ 175 (191)
T PF04156_consen 152 ELQDSREEVQELRSQLERLQENLQ 175 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555554443333
No 24
>PRK13257 allantoicase; Provisional
Probab=92.75 E-value=1.7 Score=47.26 Aligned_cols=135 Identities=15% Similarity=0.267 Sum_probs=93.7
Q ss_pred cccccccccCceEeeccccccc-cCcccccCccccccc---------ccC-------CCCcEEEEEecceeeecEEEEee
Q 006838 220 EYNYASAMKGAKLVAHNKEAKG-ASNILGKDHNKYLRN---------PCS-------VAGKFVVIELGEETLVDTVKIAN 282 (629)
Q Consensus 220 ~~NYAS~d~GAkIl~sn~eakg-asnIL~~nkD~YMLn---------PCs-------a~~kfVVIELcEeI~V~~I~IAN 282 (629)
.+|-||...|++|++.+-+-=+ +.|+|.+....+... --| ...-|+||.|--.-.|..|+|--
T Consensus 17 ~~dLas~~~Gg~vl~~sDe~Fa~~~nLl~p~~~~~~~~~f~~~Gk~~DGWETRRrR~~g~DW~IirLg~~G~I~~v~VDT 96 (336)
T PRK13257 17 YPNLADRRLGAQVLAASDEFFAEKERMLNPEPAVFIPGKFDDHGKWMDGWETRRRRTTGHDWAIVRLGVPGVIRGVDVDT 96 (336)
T ss_pred ccceehhhcCCEEEEEchhhhcCHHHccCCCCCccccccccccCccccCccccccCCCCCCEEEEEcCCCcEEEEEEEec
Confidence 3799999999999999976544 588888776665111 111 12359999999999999988843
Q ss_pred cccccCCCCeEEEEeecc---CCC--CCceeeEEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEec
Q 006838 283 FEHYSSNFKEFELSGSLS---YPT--EVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYG 357 (629)
Q Consensus 283 fE~fSS~pKdF~VsgS~~---YPt--~~W~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG 357 (629)
-=|=-..|-.++|-+... +|+ ..|..|=.=+.-.......|.+..+.-+-.|||.+.=-=| +.++||||
T Consensus 97 a~F~GN~p~~~siea~~~~~~~~~~~~~W~ellp~~~l~p~~~h~f~v~~~~~~THvRLniyPDGG------vaRlRv~G 170 (336)
T PRK13257 97 AHFTGNYPPAASVEACYVPDGYPSDAAEWTEIVPATTLQGDSHHYFEVDDARRFTHVRLNIYPDGG------VARLRVYG 170 (336)
T ss_pred cccCCCCCCeEEEEEEecCCCCCccCCCceEeccccccCCCcEeeEEcCCCCceEEEEEEEECCCC------eeEEEEee
Confidence 323344566667766432 444 3698775544444445567998777777889988866555 89999999
Q ss_pred cch
Q 006838 358 VDA 360 (629)
Q Consensus 358 ~t~ 360 (629)
.-.
T Consensus 171 ~~~ 173 (336)
T PRK13257 171 EPQ 173 (336)
T ss_pred eec
Confidence 853
No 25
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.16 E-value=2.7 Score=46.42 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTV 536 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~ 536 (629)
+.-+..|++.++.|+..+..++.=+.++...-.. ..++.+.+.++...+.+.+.+|.++.+.+..++.++..+++=...
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~ 376 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD 376 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 6788999999999999999999999977776654 677888888888888888888888888888888888777665555
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 537 VSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+..+|..+..+...++.+..++.++.
T Consensus 377 ~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 377 NAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777766666665554
No 26
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=91.58 E-value=4.7 Score=40.08 Aligned_cols=23 Identities=4% Similarity=-0.021 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 006838 579 FACFAIFKLVSARLSTLLRASQC 601 (629)
Q Consensus 579 f~~la~~~l~~~~~~~~~~~~~~ 601 (629)
|..++++-|=+.++..+|++-..
T Consensus 237 LT~~t~iflPlt~i~g~fGMN~~ 259 (292)
T PF01544_consen 237 LTIVTAIFLPLTFITGIFGMNFK 259 (292)
T ss_dssp HHHHHHHHHHHHHHTTSTTS-SS
T ss_pred HHHHHHHHHHHHHHHHHhhCCcc
Confidence 34444444677777888886444
No 27
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.25 E-value=1.5 Score=46.69 Aligned_cols=74 Identities=27% Similarity=0.441 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQ--RQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~--ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
.++..|-+++..++...-.-.+|++++.. ....-..++++++.++...-+....+|++|...++.+++++.+++
T Consensus 9 ~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp ---------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555552 233444555555555555555555555555555555555554443
No 28
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=91.06 E-value=11 Score=38.94 Aligned_cols=93 Identities=6% Similarity=0.020 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccCcc
Q 006838 532 SWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTLLRASQCS-KVRRTNRG 610 (629)
Q Consensus 532 swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f~~la~~~l~~~~~~~~~~~~~~~-~~~~~~~~ 610 (629)
.+-..+..+++.+......+|..++.+.+...++-+-.+-- +-=+|..++++-+...++..+||+-... .+-...-|
T Consensus 216 ~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~--~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~g 293 (318)
T TIGR00383 216 EYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNE--IMKILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYG 293 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCcccCccccchhH
Confidence 33344444556666666666666666655444433322211 1223445666667888888889875331 12223457
Q ss_pred chhhhhhhhHHHHhhh
Q 006838 611 WVLILLSSSMTIFVTL 626 (629)
Q Consensus 611 w~~ll~ss~~~~fi~~ 626 (629)
|..+++.+.+++.++.
T Consensus 294 y~~~l~~m~~i~~~~~ 309 (318)
T TIGR00383 294 YPAVLIVMAVIALGPL 309 (318)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766666655555444
No 29
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=91.05 E-value=3.6 Score=44.51 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=91.8
Q ss_pred ccccccccCceEeeccccccc-cCcccccCcccccccc---------cCC-------CCcEEEEEecceeeecEEEEeec
Q 006838 221 YNYASAMKGAKLVAHNKEAKG-ASNILGKDHNKYLRNP---------CSV-------AGKFVVIELGEETLVDTVKIANF 283 (629)
Q Consensus 221 ~NYAS~d~GAkIl~sn~eakg-asnIL~~nkD~YMLnP---------Csa-------~~kfVVIELcEeI~V~~I~IANf 283 (629)
.|-||...|++|++.+-+-=+ +.|+|.+.+..+...- .|. ..-|+||.|.-.-.|..|+|---
T Consensus 3 ~dLa~~~~Gg~vl~~sDe~Fa~~~nLl~p~~~~f~~~~f~~~G~~~DGWETRRrR~~g~DW~ivkLg~~G~I~~v~vDTa 82 (322)
T TIGR02961 3 VNLADRRLGGKVLFASDEFFAPAENLLKPEAPEFKPGVFDEFGKWMDGWETRRKRGAGHDWCIVRLGVPGVIHGVDIDTS 82 (322)
T ss_pred cceehhhcCCEEEEEccchhcCHHhccCCCCCccccccccccCccccCccccccCCCCCCEEEEEeCCCcEEEEEEEeCc
Confidence 588999999999999976554 4888887765432211 111 24599999999999999888432
Q ss_pred ccccCCCCeEEEEeecc-C--C-----CCCceeeEEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEE
Q 006838 284 EHYSSNFKEFELSGSLS-Y--P-----TEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEV 355 (629)
Q Consensus 284 E~fSS~pKdF~VsgS~~-Y--P-----t~~W~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrV 355 (629)
=|=-..|-.++|-+... . | ...|..|=.=+.-.......|.+..+.-+-.|||.+.=-=| +.++||
T Consensus 83 ~F~GN~p~~~siea~~~~~~~~~~~~~~~~W~ell~~t~l~~~~~h~f~v~~~~~~THvRLni~PDGG------iaRlRv 156 (322)
T TIGR02961 83 FFTGNYPPAVSIEACLSPEPSPEILLDSTEWVELLPRTELGPSQHHYFEVSSKQRFTHIRLNIYPDGG------IARLRV 156 (322)
T ss_pred ccCCCCCCeEEEEEEeCCCCCccccccCCCCcEeecccccCCCceeeEEcCCCCceEEEEEEEECCCC------eeeEEe
Confidence 23334455666665331 1 1 23588765444444445577998777777899998876555 899999
Q ss_pred eccchH
Q 006838 356 YGVDAI 361 (629)
Q Consensus 356 yG~t~v 361 (629)
||.-..
T Consensus 157 yG~~~~ 162 (322)
T TIGR02961 157 YGIVVP 162 (322)
T ss_pred eccccC
Confidence 998543
No 30
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=90.85 E-value=17 Score=38.34 Aligned_cols=167 Identities=11% Similarity=0.079 Sum_probs=90.9
Q ss_pred HHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHhh-------
Q 006838 459 VLRILMQKVKS----LEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKS--KLELEELVKWRETMER------- 525 (629)
Q Consensus 459 VlKiLmqKvks----LE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~--~aeI~~L~e~K~~~ek------- 525 (629)
.|..+..|+.. =.....++..-++.+..+|...+..+++++..+...+... +..+..+.+.|+.+-+
T Consensus 119 ~~~~vr~r~~~~~~~~~~~~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~ 198 (322)
T COG0598 119 AFDRVRERLEKGTLLTRGADELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAP 198 (322)
T ss_pred cHHHHHHHHhccccccCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444 2334456667778888888888888888888887655541 2234444433222211
Q ss_pred -------hchhhh-hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHH-----HHHHHHHHHHHHHHHHHH
Q 006838 526 -------GLSDLE-SWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLS-----VSLFFACFAIFKLVSARL 592 (629)
Q Consensus 526 -------~~~~l~-swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~-----isl~f~~la~~~l~~~~~ 592 (629)
=+..-. .-......+++++..+...+-..++..++..+.|..=-++.+. +-=+|..++++=+-..++
T Consensus 199 ~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlI 278 (322)
T COG0598 199 LRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLI 278 (322)
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 000000 0112234556666666666666666666666555544444332 223566677777888899
Q ss_pred HHHHHhhhcc-cccccCccchhhhhhhhHHHHhh
Q 006838 593 STLLRASQCS-KVRRTNRGWVLILLSSSMTIFVT 625 (629)
Q Consensus 593 ~~~~~~~~~~-~~~~~~~~w~~ll~ss~~~~fi~ 625 (629)
..+||+-... .+-...-||.++|+-..++..++
T Consensus 279 agiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~ 312 (322)
T COG0598 279 TGFYGMNFKGMPELDWPYGYPIALILMLLLALLL 312 (322)
T ss_pred HcccccCCCCCcCCCCcccHHHHHHHHHHHHHHH
Confidence 9999976552 22223336555444444444433
No 31
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=90.81 E-value=2.5 Score=48.25 Aligned_cols=131 Identities=15% Similarity=0.238 Sum_probs=91.5
Q ss_pred cccccccccCceEeeccccccc-cCcccccCcccccc---------cccCCCCcEEEEEecceeeecEEEEeecccccCC
Q 006838 220 EYNYASAMKGAKLVAHNKEAKG-ASNILGKDHNKYLR---------NPCSVAGKFVVIELGEETLVDTVKIANFEHYSSN 289 (629)
Q Consensus 220 ~~NYAS~d~GAkIl~sn~eakg-asnIL~~nkD~YML---------nPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~ 289 (629)
.+|-||...|++|+..+-+--+ +.|+|.+.+...|- .| ..-|+||.|.-.-.|+.|+|---=|=-..
T Consensus 184 ~~dLa~~~nGg~v~~~sD~~fg~~~nli~pg~~~~mgDGWETrRrR~p---g~Dw~iv~Lg~~G~I~~v~vDT~~FkGN~ 260 (516)
T PRK13797 184 TSDLAAAYLGGVVVAASDMHYGDRHNLNASGDARAMGEGWETRRRRGP---GHDWAVVRLATQGTIVRAEVDTRHFRGNA 260 (516)
T ss_pred ccchhhhccCCEEEEecccccCCHHHccCCCCcccccccccccccCCC---CCCEEEEEeCCCCEEEEEEEeCCccCCCC
Confidence 4899999999999998876555 47888776655552 22 13599999999999999888443344456
Q ss_pred CCeEEEEeecc--CC-------CCCcee-eEEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 290 FKEFELSGSLS--YP-------TEVWSP-LGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 290 pKdF~VsgS~~--YP-------t~~W~~-LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
|..+.|.|..- .| ..+|.. |+.-..... ....|.+..+.-+-.|||.+.=-=| ++++||||.-
T Consensus 261 P~~~si~a~~~~~~~~~~~~~~~~~W~~llp~~~l~~~-~~h~f~~~~~~~~THvrl~i~PDGG------vsRlRv~G~~ 333 (516)
T PRK13797 261 PRAVALWAADAPDLLDPDDLAAITEWRPLLPRTRVQPN-TRHLFDLEVPVQATHVRVDAIPDGG------LARLRLTGAP 333 (516)
T ss_pred CCeEEEEEEecCCCCchhhhccCCCceEcCCCcccCCC-ceeeeecCCCCCceEEEEEEECCCC------eeeEEEeeee
Confidence 77778887532 22 235874 454444444 3577887655556888888876555 8999999985
Q ss_pred h
Q 006838 360 A 360 (629)
Q Consensus 360 ~ 360 (629)
.
T Consensus 334 ~ 334 (516)
T PRK13797 334 T 334 (516)
T ss_pred c
Confidence 3
No 32
>PRK09546 zntB zinc transporter; Reviewed
Probab=90.24 E-value=17 Score=38.10 Aligned_cols=45 Identities=16% Similarity=0.025 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-cccccCccchhhhhhhhHHHHhhh
Q 006838 582 FAIFKLVSARLSTLLRASQCS-KVRRTNRGWVLILLSSSMTIFVTL 626 (629)
Q Consensus 582 la~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~ll~ss~~~~fi~~ 626 (629)
++++-+-..++..+|++-... -+-...-||.++++-+.++++++.
T Consensus 270 lt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~~ 315 (324)
T PRK09546 270 MAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGVA 315 (324)
T ss_pred HHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHHH
Confidence 344444777888888876431 122233577766655555554443
No 33
>KOG4276 consensus Predicted hormone receptor interactor [General function prediction only]
Probab=90.07 E-value=2.6 Score=39.07 Aligned_cols=95 Identities=18% Similarity=0.333 Sum_probs=74.2
Q ss_pred CcEEEEEecceeeecEEEEeeccc-ccCCCCeEEEEeeccCCCCCceeeEEEEeec----cccceeeeCCCC---ceEEE
Q 006838 262 GKFVVIELGEETLVDTVKIANFEH-YSSNFKEFELSGSLSYPTEVWSPLGKFVATN----VKQLQSFKLPEP---KWVRY 333 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE~-fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~N----~R~~Q~F~L~~~---~w~RY 333 (629)
..|++|.|-+++++..-++.+--- =-|+.|.-.+.||. +.+.|+.|-.-+-+. ....-+.+|..+ .|+|+
T Consensus 7 ~awf~iDLG~~vip~~y~lrh~rgygRsalRnW~fQgS~--DgktWt~l~vH~DD~sl~epGstAtWpi~~a~~~~~fRf 84 (113)
T KOG4276|consen 7 NAWFAIDLGLEVIPTAYTLRHARGYGRSALRNWKFQGSK--DGKTWTDLRVHVDDKSLCEPGSTATWPITAANDLLPFRF 84 (113)
T ss_pred ceeEEEecCceEeeeeeeeeecccccHHHhhheeeeccc--cCCcceeEEEEeccccccCCCccccccccCcccccceEE
Confidence 569999999999999999998754 45788888999998 468999998776543 233456778655 49999
Q ss_pred EEEEEee--ccCCcceeeeeEEEEecc
Q 006838 334 LKLNLLS--HYGSEFYCTLSVVEVYGV 358 (629)
Q Consensus 334 LKle~LS--HyGsE~YC~LS~vrVyG~ 358 (629)
+||...- --|+-+|=.++-+++||.
T Consensus 85 fRi~q~G~nasgqThylscsgfElYG~ 111 (113)
T KOG4276|consen 85 FRIVQNGKNASGQTHYLSCSGFELYGY 111 (113)
T ss_pred EEEEecCCCCCCccceeEeeeEEEEEE
Confidence 9998875 345667777788999995
No 34
>smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
Probab=89.65 E-value=6.2 Score=38.12 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=74.0
Q ss_pred cCcccccCcccc-cccccCC----CCcEEEEEecceeeecEEEEeec-ccccCCCCeEEEEeeccCCCC-Cce-eeEEEE
Q 006838 242 ASNILGKDHNKY-LRNPCSV----AGKFVVIELGEETLVDTVKIANF-EHYSSNFKEFELSGSLSYPTE-VWS-PLGKFV 313 (629)
Q Consensus 242 asnIL~~nkD~Y-MLnPCsa----~~kfVVIELcEeI~V~~I~IANf-E~fSS~pKdF~VsgS~~YPt~-~W~-~LG~F~ 313 (629)
|+.....+++.. .-+.|.. ..-|..|-|.....|..|.|.|= +........|+|.+.+.-... ... .-|.-.
T Consensus 26 A~~AVDGn~~~~~~~~scthT~~e~~PWW~VDL~~~~~V~~V~I~NR~Dcc~~rl~~~eI~IG~s~~~~~~~n~~c~~~~ 105 (151)
T smart00607 26 ASAAIDGNRASFTPEGSCSHTEKRSNPWWRVDLLQYMTIHSVTITNRGDCCGERITGARILIGNSLENGGINNPNCSTGG 105 (151)
T ss_pred HhHcCcCCccCCCCCCccccCCCCCCCeEEEeCCCeEEeeEEEEecCCCCCCccccceEEEECCcccccCCcCcccCCCc
Confidence 566677776644 4455644 24577899999999999999995 778899999999988642110 011 112111
Q ss_pred eeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 314 ATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 314 a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
.......-+|..+.+.-.|||.|.+.. ..-|=+|=-|+|||..
T Consensus 106 ~~~~~~~~~~~c~~~~~GRYV~i~Lpg---~~~~L~LCEVeV~~~~ 148 (151)
T smart00607 106 LMAGGETKTFCCPPPMIGRYVTVYLPK---PNESLILCEVEVNALF 148 (151)
T ss_pred eeCCCceEEEeCCCCCeeEEEEEEecC---CCccEEEeEEEEcccC
Confidence 111122233444445799999999985 4345555678999863
No 35
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.52 E-value=9.7 Score=36.81 Aligned_cols=91 Identities=24% Similarity=0.286 Sum_probs=40.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHH
Q 006838 465 QKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNEL 544 (629)
Q Consensus 465 qKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l 544 (629)
+++|.-+.....+++-|+-|-+-. ...+.....+..-.++.+++|..|.+.-..|..++. .+...|+.+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreL----e~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~-------~L~~EL~~l 78 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLEREL----EMSQENKECLILDAENSKAEIETLEEELEELTSELN-------QLELELDTL 78 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 444444444444444444444333 333444444444445555555555555545544442 223344444
Q ss_pred HHHhhHHHHHHHHHHhhhhhhc
Q 006838 545 IKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 545 ~reN~~LR~~Ve~v~~~q~~mE 566 (629)
..++..|=..+++.++++..+|
T Consensus 79 ~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 79 RSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333
No 36
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=89.48 E-value=40 Score=37.67 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=30.7
Q ss_pred CCchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 006838 454 IPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVF 492 (629)
Q Consensus 454 ~~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f 492 (629)
.+....++-|-..|+.+...++.|++=+|.|...|..-+
T Consensus 208 ~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~ 246 (395)
T PF10267_consen 208 SQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREY 246 (395)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888999999999999999998887654433
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.32 E-value=5.1 Score=44.33 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHH
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFR 540 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsq 540 (629)
+.|..++..|+.....+..+++++...+...+.++++++..+......+++++..+.+.-.++.+++.++ ...
T Consensus 184 ~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~-------~~~ 256 (562)
T PHA02562 184 QTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP-------SAA 256 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-------HHH
Confidence 4455555666666666666677776666666666666666666666666555555554444444333222 334
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 541 VNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 541 Ld~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
|..+..+...++.+++.+.....-+
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555444434
No 38
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.13 E-value=7.7 Score=40.04 Aligned_cols=28 Identities=39% Similarity=0.495 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQR 487 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~r 487 (629)
|-.-+.||+.||..-..|+.=|..+..+
T Consensus 13 la~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 13 LASYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 4456789999999999999888887777
No 39
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=88.76 E-value=4.4 Score=46.33 Aligned_cols=135 Identities=17% Similarity=0.255 Sum_probs=88.4
Q ss_pred cccccccccCceEeeccccccc-cCcccccCcccccccc----------------cC-CCCcEEEEEecceeeecEEEEe
Q 006838 220 EYNYASAMKGAKLVAHNKEAKG-ASNILGKDHNKYLRNP----------------CS-VAGKFVVIELGEETLVDTVKIA 281 (629)
Q Consensus 220 ~~NYAS~d~GAkIl~sn~eakg-asnIL~~nkD~YMLnP----------------Cs-a~~kfVVIELcEeI~V~~I~IA 281 (629)
-+|-||...|++|++.+-+-=+ +.|+|.+.+..++..- =. ...-|+||.|--.-.|..|+|-
T Consensus 10 ~~dLa~~~~Gg~v~~~sD~~Fa~~~nll~p~~~~~~~~~f~~~G~~~DGWETrR~R~~~g~DW~iirLg~~g~i~~v~vD 89 (516)
T PRK13797 10 LVDLAAARFGGTVVAVNDEFFAFAERMLLAEPPVVRPGVFTERGQWTDGWETRRRRDLPGADWAIVRLGAPGIAHAVTVD 89 (516)
T ss_pred hhhhhhhhcCCEEEEEccchhcCHHhcCCCCCCccccccccccCccccCccccccCCCCCCCEEEEEeCCCcEEEEEEEe
Confidence 3799999999999999976554 4889988765543211 00 1235999999999999998883
Q ss_pred ecccccCCCCeEEEEeec--cCCC--------CCceeeEEEEeeccccceeeeCCCC-ce-EEEEEEEEeeccCCcceee
Q 006838 282 NFEHYSSNFKEFELSGSL--SYPT--------EVWSPLGKFVATNVKQLQSFKLPEP-KW-VRYLKLNLLSHYGSEFYCT 349 (629)
Q Consensus 282 NfE~fSS~pKdF~VsgS~--~YPt--------~~W~~LG~F~a~N~R~~Q~F~L~~~-~w-~RYLKle~LSHyGsE~YC~ 349 (629)
--=|=-..|-.+.|-|.. .+|+ ..|..|=.=+.-..-....|.+... .| +-.|||.+.=-=|
T Consensus 90 Ta~F~GN~p~~~siea~~~~~~~~~~~~~~~~~~W~~ll~~~~l~~~~~h~f~~~~~~~~~~THvRlni~PDGG------ 163 (516)
T PRK13797 90 TTHFTGNAPEAVEIHGATLAGYPSAEDVADDSVHWVELVPRTPIAADAVNVLPVASSGRLRITHLRLTIHPDGG------ 163 (516)
T ss_pred ccccCCCCCCeEEEEEEecCCCCChhhhcccCCCCcEeeccccCCCCceeeEEcCCCCcceeeEEEEEEecCCC------
Confidence 322223344555665532 2232 2587664333333334467888655 35 6888888866555
Q ss_pred eeEEEEeccch
Q 006838 350 LSVVEVYGVDA 360 (629)
Q Consensus 350 LS~vrVyG~t~ 360 (629)
+.++||||.-.
T Consensus 164 iaRlRv~G~~~ 174 (516)
T PRK13797 164 VARLRVHGTVV 174 (516)
T ss_pred eeEEEEecccc
Confidence 89999999843
No 40
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=88.64 E-value=4 Score=39.96 Aligned_cols=111 Identities=17% Similarity=0.280 Sum_probs=78.5
Q ss_pred ccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEee-cccccCCCCeEEEEeeccCCCCCceeeEEEEeecc
Q 006838 239 AKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIAN-FEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNV 317 (629)
Q Consensus 239 akgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IAN-fE~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~N~ 317 (629)
.-+++.++.+ .+.|--..-+.+..|+-|++.+.+.|..+.|.= -+=-|-+|+.+.|+|-+.+- .|-+++.-+.
T Consensus 37 ~~~~~~L~D~-~~TYWQSdG~q~~HwI~l~~~~~v~I~~L~i~vd~~DeSY~Ps~I~V~~G~~~~-----~L~el~~V~i 110 (152)
T cd08664 37 ENQAKRLIDG-SGSYWQSSGSQGKHWIRLELHPDVLIHSLKIIVDPADSSYMPSLVVVSGGDSLN-----SLKELKTINV 110 (152)
T ss_pred cccHHHhcCC-CCCeeccCCCCCceEEEEEECCCcEEEEEEEEecCCCCCcCCceEEEEecCChh-----hhheeEEEEc
Confidence 4677788888 888888777766789999999999999988754 33457799999999877542 2333333333
Q ss_pred cccee-eeCCCC--ceEEEEEEEEeeccCCcceeeeeEEEE
Q 006838 318 KQLQS-FKLPEP--KWVRYLKLNLLSHYGSEFYCTLSVVEV 355 (629)
Q Consensus 318 R~~Q~-F~L~~~--~w~RYLKle~LSHyGsE~YC~LS~vrV 355 (629)
..... ..|.++ .+..||.|.+.+.|-+.-=|-+-.++|
T Consensus 111 ~~~~~~v~Ll~~~~~~~~~IqI~I~~ch~~GiDt~IrglkI 151 (152)
T cd08664 111 NATDTLVTLLQDVKEYYRYIEIAIKQCRNNGIDCKIHGLNI 151 (152)
T ss_pred CCCCceEEeccCCCeeeEEEEEEhHhhhhCCCcceeeEEEe
Confidence 22222 222333 467999999999999988886555544
No 41
>KOG1396 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.91 E-value=0.22 Score=56.09 Aligned_cols=165 Identities=17% Similarity=0.043 Sum_probs=129.0
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHh
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKL------------ELEELVKWRETME 524 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~a------------eI~~L~e~K~~~e 524 (629)
+.+.+-++|+++.-|.|....+.|-+-+.+-. ++.....++.....+++.+ .++++.+|...+.
T Consensus 272 ~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~----~e~~~~~tk~~~~~~~~~~n~~~~~s~~i~~~~~~iv~~~~~~~ 347 (530)
T KOG1396|consen 272 DNDSAQESNVQELFEEDYDYPLDPQTGQDKSS----KEVTGSATKQTVNMVNIAANILSAKSEDITEKNSEIVENATATK 347 (530)
T ss_pred HHHHHHHHHHHHhhhcCcccCCCccccccccC----ccCccccccchhhhhhcccchhccccccccccchhheecccccc
Confidence 56778888999999999888887777666554 3334444555555555555 2466666665543
Q ss_pred -----------hhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHHH-HHHHHHHHHHHH
Q 006838 525 -----------RGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFA-CFAIFKLVSARL 592 (629)
Q Consensus 525 -----------k~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f~-~la~~~l~~~~~ 592 (629)
+.+-....|...|-.+.-...|-+.+.|+.+++..++|+.+.++..-++..++.+- ..+..+++.-.+
T Consensus 348 ~pk~p~~~~~s~~~~~p~~~~t~v~k~~m~~~~~l~a~~s~i~~~vqe~~~~~s~~~~~l~~~~~~~~~~~~t~~~~~~~ 427 (530)
T KOG1396|consen 348 APKKPDSVEVSKNLPSPEIPTTEVHKRDMKPSRGLEAKRSPIVKYVQEREELLSKSFETLLKSLEKEWFESETQIFEEEL 427 (530)
T ss_pred ccccccccccccCCCCCcCcchhHhhhhhccccccchhhhhHHHHHHHHHHhhhhhHHHHHhhhhhhhchhHHHHhhhhh
Confidence 34456678999999999999999999999999999999999999999999999998 888999999999
Q ss_pred HHHHHhhhccc--ccccCccchhhhhhhhHHHHhh
Q 006838 593 STLLRASQCSK--VRRTNRGWVLILLSSSMTIFVT 625 (629)
Q Consensus 593 ~~~~~~~~~~~--~~~~~~~w~~ll~ss~~~~fi~ 625 (629)
++++......+ .-+.+.+|++..+.+...++.-
T Consensus 428 ~~~~~e~~~~~~~~~~~sl~~~~~~l~~~~~~~~~ 462 (530)
T KOG1396|consen 428 MTILEESSKSEAIYKWPSLRVVEERLLSATAETNG 462 (530)
T ss_pred hhhhhhcccHHhhhccchhHHHHHHhhhhhhhhHH
Confidence 98888766643 4567889999988887776653
No 42
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=86.20 E-value=28 Score=39.12 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 006838 457 DTVLRILMQKVKSLEQN-LSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETME 524 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N-~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~e 524 (629)
+++--+|-.|+.-||.- ..+|.+.....++.-=..+..+-+.|+.+..-.+++|.+|.+|+|..+.|+
T Consensus 186 e~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma 254 (414)
T KOG2662|consen 186 EAACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMA 254 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 45666777777777765 356677777778888788888888999999999999999999999766665
No 43
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.15 E-value=13 Score=39.55 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry 488 (629)
+.+...|-..+..|+.....|..+++.++..+
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~ 179 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLDELL 179 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777778788777777777777766544
No 44
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=85.59 E-value=12 Score=41.75 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=22.2
Q ss_pred HHHHHHhhhhhhcccc----hhHHHHHHHHHHHHHHH
Q 006838 554 DVEKVSSDQANLESKE----LAVLSVSLFFACFAIFK 586 (629)
Q Consensus 554 ~Ve~v~~~q~~mEnK~----laVl~isl~f~~la~~~ 586 (629)
.++.+.+..+..|..+ +++|++.+++++++++.
T Consensus 193 ~l~~i~~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~g 229 (418)
T cd07912 193 SLTKLADQVSLYESYRWLAYLGLLSLLLVICLVLLVG 229 (418)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777 67777777777766543
No 45
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=85.09 E-value=16 Score=36.96 Aligned_cols=93 Identities=25% Similarity=0.334 Sum_probs=57.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHhhhchhh-hhHHHHHHHHHHHHHH
Q 006838 472 QNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKW----RETMERGLSDL-ESWKTVVSFRVNELIK 546 (629)
Q Consensus 472 ~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~----K~~~ek~~~~l-~swks~VSsqLd~l~r 546 (629)
.|+.+|.+|-...-..|-..+..+ +......|.+.|.+|.++--. +.....++..| ..|+..|+. -=++..
T Consensus 121 ~NLeLl~~~g~naW~~~n~~Le~~---~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~k-n~eie~ 196 (221)
T PF05700_consen 121 ENLELLSKYGENAWLIHNEQLEAM---LKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSK-NLEIEV 196 (221)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456689999998877776544333 334444444555555544331 22233333333 468888874 445788
Q ss_pred HhhHHHHHHHHHHhhhhhhccc
Q 006838 547 ENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 547 eN~~LR~~Ve~v~~~q~~mEnK 568 (629)
....|+.+|.+++.++...+.+
T Consensus 197 a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 197 ACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 8888999999998887766543
No 46
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=84.89 E-value=25 Score=38.76 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=63.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHH-----------HHHHHHHHhhhchhhh
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEE-----------LVKWRETMERGLSDLE 531 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~-----------L~e~K~~~ek~~~~l~ 531 (629)
.|+.+|+-. .-+..-+.+++.+|+...+.+...-.++...-..+..+++. +..+...+++++.+++
T Consensus 286 ~i~~Lr~~~---~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~ 362 (458)
T COG3206 286 TIQDLRQQY---AQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLK 362 (458)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Confidence 455555544 55667788888889888877665444444444444333333 3223334444443332
Q ss_pred hHH---HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 532 SWK---TVVSFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 532 swk---s~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
+=- .....++.+|+||-...|.-.+.+..+++.+...+
T Consensus 363 ~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 363 GRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 221 23378899999999999999998887776655443
No 47
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=84.57 E-value=16 Score=43.61 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry 488 (629)
++.+..+++.|+..+.-+..-++.+.+..
T Consensus 676 l~~l~~~l~~l~~~l~~l~~~~~~~~~~l 704 (1164)
T TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRL 704 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666665555444443
No 48
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=84.51 E-value=26 Score=36.58 Aligned_cols=125 Identities=14% Similarity=0.216 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHhHHHHHHHH--HHHHHHhhhchhhhhHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDRE-ITRISLLLEKSKLELEELV--KWRETMERGLSDLESWKTV 536 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~e-l~~~~~~Lek~~aeI~~L~--e~K~~~ek~~~~l~swks~ 536 (629)
.|.+|+.+--++-++-+.++=.+++-.....+-+++... ..--..+++.++.+|+++- +.+..+-+|+ ..
T Consensus 52 nkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~ei-------~k 124 (230)
T PF03904_consen 52 NKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQNEI-------KK 124 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH-------HH
Confidence 588999999999999999999999988777777776653 3333445566666666551 2333333333 23
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006838 537 VSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTLLR 597 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f~~la~~~l~~~~~~~~~~ 597 (629)
|...++.+.+| +|..+|+.+..|..|--.-.++|+ +|++||++.++..=+..+++
T Consensus 125 ~r~e~~~ml~e---vK~~~E~y~k~~k~~~~gi~aml~---Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 125 VREENKSMLQE---VKQSHEKYQKRQKSMYKGIGAMLF---VFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHhcccchhhhh
Confidence 33444444444 677888888888887766555554 45555555544333333333
No 49
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.29 E-value=18 Score=46.33 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQ 486 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ 486 (629)
-+++-|-.+++.||....-..+|.+....
T Consensus 314 diL~ELe~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 314 RELAELNEAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777766776665443
No 50
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.21 E-value=20 Score=38.48 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELN 485 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln 485 (629)
+.+...|-..+..|.....+|..+++.++
T Consensus 143 egLk~~L~~~~~~l~~D~~~L~~~~~~l~ 171 (312)
T smart00787 143 EGLKEGLDENLEGLKEDYKLLMKELELLN 171 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444
No 51
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.14 E-value=15 Score=45.65 Aligned_cols=109 Identities=23% Similarity=0.310 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVV 537 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~V 537 (629)
.....+-+++..++..+.-+..=++.+...+.+.-.++.++++.....|..++.+|..+.+.+..++ -.++.++...+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye--~~~i~~~~~~~ 351 (1201)
T PF12128_consen 274 ADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYE--DADIEQLIARV 351 (1201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHH
Confidence 5566677777777888888888888888888888899999999999999999999999999999987 33466666665
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
.++.++..+...++.+...+-+...+.+.|-
T Consensus 352 -~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky 382 (1201)
T PF12128_consen 352 -DQLPEWRNELENLQEQLDLLTSKHQDIESKY 382 (1201)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666666666666655553
No 52
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.91 E-value=11 Score=42.57 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 498 EITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 498 el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
.+.++...+.+...+++++.|.-..+- .++..|+..+.-+-+...+.+..+-..++.+++.
T Consensus 383 k~~q~q~k~~k~~kel~~~~E~n~~l~---knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEEREENKKLI---KNQDVWRGKLKELEEREKEALGSKDEKITDLQEQ 443 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444334444433332222 3345666666655555555555554555444433
No 53
>KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.88 E-value=14 Score=37.25 Aligned_cols=118 Identities=10% Similarity=0.098 Sum_probs=90.4
Q ss_pred ccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeec-c-cccCCCCeEEEEeeccCCCCCceeeEEEEeec
Q 006838 239 AKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANF-E-HYSSNFKEFELSGSLSYPTEVWSPLGKFVATN 316 (629)
Q Consensus 239 akgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANf-E-~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~N 316 (629)
.-++.+++.+|.|.|-..--+.+. -+.|.+.+.+.|..|.|--. - -=|=+|-.++|.....+ ++|..+-.-+...
T Consensus 36 g~pvd~l~Ddn~etyWqSdG~~PH-~i~I~F~K~~~I~~v~if~~f~~DeSYtPs~i~I~~G~g~--~dl~~~~~~el~e 112 (184)
T KOG3437|consen 36 GFPVDNLRDDNPETYWQSDGSQPH-LINIQFHKRVDIQYVVIFLDFKQDESYTPSKIKIRAGNGF--NDLWEIQSVELVE 112 (184)
T ss_pred CCChHHhhcCChhHheecCCCCCe-EEEEEEEeEEEEEEEEEEEEEecccccCceeEEEEecCCh--hheeeeeEEEEec
Confidence 456888999999999888887764 78999999999999998652 0 11335777777777654 6666666666666
Q ss_pred cccceeeeCC----CCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 317 VKQLQSFKLP----EPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 317 ~R~~Q~F~L~----~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
.+++-.-++. +|.-+-||.+.++++|-+.-=|.+-.+|||+..
T Consensus 113 p~GWv~lp~~d~~~~~lr~~~iqi~i~~NHq~GkDthvR~iri~~p~ 159 (184)
T KOG3437|consen 113 PKGWVHLPVLDNDDKPLRCFMIQIAILSNHQNGKDTHVRHIRIYAPS 159 (184)
T ss_pred CCceEEEeeccCCCCceEEEEEEEEeecccccCccceeEEEEEeccc
Confidence 6666554443 234677999999999999999999999999985
No 54
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.36 E-value=26 Score=39.81 Aligned_cols=107 Identities=20% Similarity=0.252 Sum_probs=74.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH------------------HHHhhh
Q 006838 465 QKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWR------------------ETMERG 526 (629)
Q Consensus 465 qKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K------------------~~~ek~ 526 (629)
+....++..+--.+..++.|+..+ ...++|+..+..+...|..++.+|....+.+ ..+.+|
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~E 289 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKE 289 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHH
Confidence 444555656666788899999988 7889999999999999999888877776622 122233
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhH
Q 006838 527 LSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAV 572 (629)
Q Consensus 527 ~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laV 572 (629)
|.+.+.=-..+...+..|...+..||.++++++.++..+..++-..
T Consensus 290 Le~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a 335 (522)
T PF05701_consen 290 LEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEA 335 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322233345566677777888888888888888888876533
No 55
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.22 E-value=17 Score=44.41 Aligned_cols=108 Identities=28% Similarity=0.398 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhhhhhHHH------------------HHHHHHHHHHhhhhhHHH------H-HHHHHHHHHHHhHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLE------------------DYIKELNQRQQDVFPELD------R-EITRISLLLEKSKLELE 514 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle------------------~YiEeln~ry~~~f~~l~------~-el~~~~~~Lek~~aeI~ 514 (629)
+-.+-.|+..||..+-+|. ..||.+|.|+.+++=.|. + +..++...+|+.++|+.
T Consensus 334 ve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~ 413 (1243)
T KOG0971|consen 334 VEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELE 413 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHH
Confidence 3456678888887766654 457889999999874443 2 66778888999999999
Q ss_pred HHHHHHHHHhhhchhhhhHHHHHHHHHH----------HHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 515 ELVKWRETMERGLSDLESWKTVVSFRVN----------ELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 515 ~L~e~K~~~ek~~~~l~swks~VSsqLd----------~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
+|...|+..-.++..+++--..+.-|+| +|+--|-+|-.+|..+++.+.+||.
T Consensus 414 eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEa 476 (1243)
T KOG0971|consen 414 ELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA 476 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Confidence 9999888888888777766665555554 5666777888888888888877774
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.93 E-value=16 Score=42.29 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=24.5
Q ss_pred EEEEeecc--cccCCCCeEEEEeeccCCCCCceeeEEEEee--ccccceee
Q 006838 277 TVKIANFE--HYSSNFKEFELSGSLSYPTEVWSPLGKFVAT--NVKQLQSF 323 (629)
Q Consensus 277 ~I~IANfE--~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~--N~R~~Q~F 323 (629)
+|.+-|.+ ++..+.=+-.-.....|....|.-+|.|.-. .+|+.-+|
T Consensus 6 ~ViF~nV~~~Y~P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s~rdY~Tf 56 (546)
T PF07888_consen 6 QVIFNNVAKSYIPGTDVECHYTLTPGFHPSSKDWIGIFKVGWSSTRDYYTF 56 (546)
T ss_pred eEEEeccccccCCCCCeEEEEecCCCCCCCCCCeeEEeecCCCchhheeeE
Confidence 45566654 2333332222233345666777778888853 24444555
No 57
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.02 E-value=6.7 Score=37.66 Aligned_cols=26 Identities=27% Similarity=0.600 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHh--hhhhHHHHHHHH
Q 006838 476 VLEDYIKELNQRQQ--DVFPELDREITR 501 (629)
Q Consensus 476 lle~YiEeln~ry~--~~f~~l~~el~~ 501 (629)
+..+|+..+|+=|+ +++..|+..+++
T Consensus 5 ~Il~y~~~qNRPys~~di~~nL~~~~~K 32 (169)
T PF07106_consen 5 AILEYMKEQNRPYSAQDIFDNLHNKVGK 32 (169)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHhhccH
Confidence 34456666665555 455555555543
No 58
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.
Probab=80.91 E-value=17 Score=35.13 Aligned_cols=110 Identities=14% Similarity=0.121 Sum_probs=64.2
Q ss_pred cccccCcc----cccccccCCCCcEEEEEecceeeecEEEEeecccccCCCCeEEEEeecc----C-------CCCCcee
Q 006838 244 NILGKDHN----KYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLS----Y-------PTEVWSP 308 (629)
Q Consensus 244 nIL~~nkD----~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS~~----Y-------Pt~~W~~ 308 (629)
+|+.+..+ .|+-.-|.. +--+-|-+-+.+.+..|.|.-..-=.++||.++|+.-.+ | |+.+|++
T Consensus 25 ~l~k~~~~r~d~~~l~SD~D~-QLii~IpF~~~Vkl~si~i~~~~~~~~~P~~iKlf~N~~~~ldF~~~~~~~p~q~~~l 103 (152)
T PF06201_consen 25 NLFKPWDDRLDPPFLESDADE-QLIIHIPFTQPVKLHSIIIKGPPDDDSAPKTIKLFINQRPNLDFDDAESIKPTQELEL 103 (152)
T ss_dssp CCSTTS--TTS---EE-SS-S-SEEEEEEEEEEEEEEEEEEE---STTTSEEEEEEEES-SS---CCHHCCS--SCEEE-
T ss_pred eeEcccccccCccccccCCCc-eeEEEEccCCceEEEEEEEEeccCCCCCCeEEEEEECCCCCcCccccccCCCCceEEc
Confidence 45554443 677776663 446667888999999999877534578999999998621 1 3333331
Q ss_pred eEEEEeeccccceeeeCCCCc--eEEEEEEEEeeccCCcceeeeeEEEEecc
Q 006838 309 LGKFVATNVKQLQSFKLPEPK--WVRYLKLNLLSHYGSEFYCTLSVVEVYGV 358 (629)
Q Consensus 309 LG~F~a~N~R~~Q~F~L~~~~--w~RYLKle~LSHyGsE~YC~LS~vrVyG~ 358 (629)
. ..+..+...|+|+-.+ -++-|-|-|-+++|.+..|-|+.+.++|.
T Consensus 104 ~----~~~~~~~~~~~Lk~~KFqnV~sLtif~~~n~g~~~~T~I~~i~l~G~ 151 (152)
T PF06201_consen 104 T----EEDSDGGVEYPLKFVKFQNVNSLTIFFEDNQGGDDVTRIYYIGLRGE 151 (152)
T ss_dssp -----TTTCCCT--EE--TTT-TTEEEEEEEEEEETT--SS-EESEEEEEEE
T ss_pred C----ccccCCceEeeeeeeccCCccEEEEEEeCCcCCCccEEEEEEEEEee
Confidence 1 1234444555555443 37788899999999766777999999996
No 59
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=80.68 E-value=46 Score=34.04 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhhhHHH----------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLE----------DYIKELNQRQQDVFPELDREITRISLLLEK----------SKLELEELVKWRET 522 (629)
Q Consensus 463 LmqKvksLE~N~Slle----------~YiEeln~ry~~~f~~l~~el~~~~~~Lek----------~~aeI~~L~e~K~~ 522 (629)
||--|..|+.|-.-|. .-+|+.|.+++.-+.+|.+.+..+--+|++ +|..++.|.|....
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~ 85 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRS 85 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665544332 346788888888887877777666555544 45555555555555
Q ss_pred HhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 523 MERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 523 ~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
.-.....++-=...+..+++.|+.+|..|-.+.+.+.++...+..+
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~ 131 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATE 131 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHh
Confidence 5555555555558888899999999999999988888877766443
No 60
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=80.58 E-value=16 Score=39.29 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=66.5
Q ss_pred CchhHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 006838 455 PGDTVLRILMQKVKSLEQNLSVL--------EDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERG 526 (629)
Q Consensus 455 ~gdSVlKiLmqKvksLE~N~Sll--------e~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~ 526 (629)
-|......|-+||-.+|.-.-.. +.|.+.+-.|..++.-.++.+-=.....|--.|+||.+..++=+.=-++
T Consensus 151 EG~~L~~~l~~~L~~ie~~v~~v~~~~P~~~~~~~~~l~~ri~~~~~~~d~~rl~qE~al~a~K~DI~EEldRL~sHv~~ 230 (290)
T COG1561 151 EGAALKADLLQRLDAIEELVEKVESLMPEILEWYRERLVARLNEAQDQLDEDRLEQEVALLAQKADIAEELDRLKSHVKE 230 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 57889999999999998776544 4555555555555554455432233344444566666665544333334
Q ss_pred chhhhhHHHHHHHHHHHHHHHh--------------------hHHHHHHHHHHhhhhhhc
Q 006838 527 LSDLESWKTVVSFRVNELIKEN--------------------SMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 527 ~~~l~swks~VSsqLd~l~reN--------------------~~LR~~Ve~v~~~q~~mE 566 (629)
+.++.+=.-.|..+||=|.+|. ..|+..||++|+.++|+|
T Consensus 231 ~~~iL~~~g~vGRkLDFl~QE~nREaNTl~SKS~~~~it~~~vElK~~IEqmREQVQNiE 290 (290)
T COG1561 231 FRNILEKGGPVGRKLDFLMQEFNREANTLGSKSNAAEITAAVVELKVLIEQMREQVQNIE 290 (290)
T ss_pred HHHHHhcCCccchhHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4333333334566666555553 357777888888777765
No 61
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.28 E-value=53 Score=31.00 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=38.7
Q ss_pred CCCCchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 006838 452 GRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKS 509 (629)
Q Consensus 452 ~r~~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~ 509 (629)
+..|.-+++..|-..||.+|.....+..-+..+...- ..+..++.+.....+.+
T Consensus 10 ~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r----~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 10 SGGPSVQLVERLQSQLRRLEGELASLQEELARLEAER----DELREEIVKLMEENEEL 63 (120)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3445578889999999999999999988888877766 44455555554444444
No 62
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.27 E-value=22 Score=37.88 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 476 VLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 476 lle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
+++...+.|..++ ..|+.|...+...++.+..-+..+.+.+..+.+++..++
T Consensus 146 ll~gl~~~L~~~~----~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk 197 (325)
T PF08317_consen 146 LLEGLKEGLEENL----ELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLK 197 (325)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 555555555555555554444455555555444444443
No 63
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=80.26 E-value=23 Score=42.49 Aligned_cols=94 Identities=24% Similarity=0.269 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVV 537 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~V 537 (629)
-|--.++++-+..|.-..-|+..|.|++++. ....-+-..+...|..--..|.+|.+.|.+.+-++. .+
T Consensus 71 ~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l----~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~-------~l 139 (769)
T PF05911_consen 71 KIHEAVAKKSKEWEKIKSELEAKLAELSKRL----AESAAENSALSKALQEKEKLIAELSEEKSQAEAEIE-------DL 139 (769)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HH
Confidence 3445556666666666667777777776654 333334444444443333448888888888887773 44
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
..+|+.+.+||..|+-+|.-+.++.
T Consensus 140 ~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 140 MARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999997766543
No 64
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=80.16 E-value=31 Score=40.61 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDR 497 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~ 497 (629)
.+.+++..||..+..+..-..++.++|+...|.+..
T Consensus 308 ~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~ 343 (726)
T PRK09841 308 AVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRA 343 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 355677888888888888888888899888887754
No 65
>PRK03918 chromosome segregation protein; Provisional
Probab=79.58 E-value=37 Score=39.99 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRET 522 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~ 522 (629)
.+-.+++.++.....++..+.++... ...++.++++++.+...+..++.++..+.+....
T Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~l~~i-~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~ 225 (880)
T PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENI-EELIKEKEKELEEVLREINEISSELPELREELEK 225 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555443322 1223434444444444444444444444433333
No 66
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=79.58 E-value=35 Score=40.57 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=8.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHH
Q 006838 464 MQKVKSLEQNLSVLEDYIKEL 484 (629)
Q Consensus 464 mqKvksLE~N~Slle~YiEel 484 (629)
..+++.++....-+...++++
T Consensus 301 ~~~~~~~~~~~~~l~~~~~~l 321 (1179)
T TIGR02168 301 EQQKQILRERLANLERQLEEL 321 (1179)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 333334443333333333333
No 67
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.14 E-value=30 Score=33.01 Aligned_cols=87 Identities=15% Similarity=0.251 Sum_probs=53.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHH
Q 006838 468 KSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKE 547 (629)
Q Consensus 468 ksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~re 547 (629)
|+|.---..+..-++.++....++=+.|..++..++..|+... |..++|.+++ ..+...++++..|
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~-------ei~~~i~~eV-------~~v~~dv~~i~~d 104 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQK-------EISKQIKDEV-------TEVREDVSQIGDD 104 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHH-------HHHHhhHHHHHHH
Confidence 3555555666677777777777777777777777777666652 2233344444 2334455566666
Q ss_pred hhHHHHHHHHHHhhhhhhccc
Q 006838 548 NSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 548 N~~LR~~Ve~v~~~q~~mEnK 568 (629)
...+...|+.+..++..+|.|
T Consensus 105 v~~v~~~V~~Le~ki~~ie~~ 125 (126)
T PF07889_consen 105 VDSVQQMVEGLEGKIDEIEEK 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 666666666666666666654
No 68
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=78.70 E-value=62 Score=31.41 Aligned_cols=66 Identities=24% Similarity=0.384 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKEL---NQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEel---n~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
.|-++|-+||..+-+++...+.+ +....+-+..|+.+++.++.-+..+..+|..+..-|+.+++++
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36679999999999988875555 4455566666888899988888889999999999888888877
No 69
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.69 E-value=29 Score=43.03 Aligned_cols=78 Identities=33% Similarity=0.390 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 492 FPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 492 f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
+..++.++......++.++.++..+.+.+..+..++..++.=+..+..+++.+..+...++..+++.+.....++.+.
T Consensus 844 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 921 (1163)
T COG1196 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL 921 (1163)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666667777777777777877888888888888888888888888888888888888888877776654433
No 70
>PRK02224 chromosome segregation protein; Provisional
Probab=78.64 E-value=37 Score=40.13 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=7.2
Q ss_pred ccchHHHHHHhhhh
Q 006838 357 GVDAIERMLEDLFV 370 (629)
Q Consensus 357 G~t~vE~~leD~i~ 370 (629)
|.+.+.+.+++++.
T Consensus 110 ~~~~~~~~i~~llg 123 (880)
T PRK02224 110 GARDVREEVTELLR 123 (880)
T ss_pred ChHHHHHHHHHHHC
Confidence 44455555555553
No 71
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=78.37 E-value=1.6 Score=47.19 Aligned_cols=107 Identities=22% Similarity=0.303 Sum_probs=8.4
Q ss_pred CCchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhh
Q 006838 454 IPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVF---PELDREITRISLLLEKSKLELEELVKWRETMERGLSDL 530 (629)
Q Consensus 454 ~~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f---~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l 530 (629)
.||| +.-|.+||.+||....-|.+-+-.++....+.= .++...+..+..-|..+..+|..++..=..+...+.++
T Consensus 26 s~GD--Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~l 103 (326)
T PF04582_consen 26 SPGD--LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSL 103 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 3444 556778888999988888888877777663322 22222333444444444444444544445555556666
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 531 ESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 531 ~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
..+-+..++.+.+|+.....|..+|-.++..+
T Consensus 104 S~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdV 135 (326)
T PF04582_consen 104 SSTLSDHSSSISDLQSSVSALSTDVSNLKSDV 135 (326)
T ss_dssp --------------HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhh
Confidence 55555555555555555544444444444333
No 72
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=78.35 E-value=50 Score=38.63 Aligned_cols=95 Identities=9% Similarity=0.149 Sum_probs=49.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHH--------hHHHHHHHHHHHHHHhhhchhhhhH
Q 006838 465 QKVKSLEQNLSVLEDYIKELNQRQQDVFPELDR---EITRISLLLEK--------SKLELEELVKWRETMERGLSDLESW 533 (629)
Q Consensus 465 qKvksLE~N~Slle~YiEeln~ry~~~f~~l~~---el~~~~~~Lek--------~~aeI~~L~e~K~~~ek~~~~l~sw 533 (629)
..++.|..++.-+++=+-++..+|+...|++.. ++..+...++. .+.++...+.+.+.+++.+ ..+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l---~~~ 364 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDV---NQL 364 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 344555555555566666777888887776544 33333322221 1122222222222333333 223
Q ss_pred HHHH------HHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 534 KTVV------SFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 534 ks~V------SsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
++.+ +.++..|+||-...|.-.+.+.++.
T Consensus 365 ~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~ 399 (754)
T TIGR01005 365 KAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNY 399 (754)
T ss_pred HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 6778888888888777666554443
No 73
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=77.92 E-value=49 Score=35.48 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHH
Q 006838 459 VLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVS 538 (629)
Q Consensus 459 VlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VS 538 (629)
=++-|--+.+.|-..+-...+-.|.+....-....-|+.+++++-..-+..+.-|++|.+..|..+.--..-+---..+.
T Consensus 60 rnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfe 139 (333)
T KOG1853|consen 60 RNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFE 139 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHH
Confidence 34444444455555555566666676666666778899999999998888888899987655554422111111123346
Q ss_pred HHHHHHHHHhhHHHHHH
Q 006838 539 FRVNELIKENSMLRIDV 555 (629)
Q Consensus 539 sqLd~l~reN~~LR~~V 555 (629)
.+|++.+.-|++|-+++
T Consensus 140 qrLnqAIErnAfLESEL 156 (333)
T KOG1853|consen 140 QRLNQAIERNAFLESEL 156 (333)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67777777777766554
No 74
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=77.86 E-value=46 Score=28.91 Aligned_cols=95 Identities=22% Similarity=0.289 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhhhchhhhhHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLE-LEELVKWRETMERGLSDLESWKTV 536 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~ae-I~~L~e~K~~~ek~~~~l~swks~ 536 (629)
..+..|.+|...++.-...++.=+..+.....++=.++...+...-.+|+..+.+ +.+|.+.++.-. ..
T Consensus 7 ~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~----------~~ 76 (127)
T smart00502 7 ELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKL----------KV 76 (127)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
Confidence 4566777788888888888888888888888888888888888888888887666 444433332222 45
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 537 VSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+..|++.+..+...|+.-+..++...
T Consensus 77 l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777776666443
No 75
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.79 E-value=84 Score=38.33 Aligned_cols=136 Identities=19% Similarity=0.224 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHhHHHHHHHHH----HHHHHhhhchh
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDR---EITRISLLLEKSKLELEELVK----WRETMERGLSD 529 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~---el~~~~~~Lek~~aeI~~L~e----~K~~~ek~~~~ 529 (629)
+-|++ +..|.++|+..+++|..-+.+|+.+..++=-++.+ ++..++.+.+-+.++|..|+. .++..-+-+-+
T Consensus 430 e~iv~-~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~E 508 (1118)
T KOG1029|consen 430 EWIVY-LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPE 508 (1118)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 55665 89999999999999999999999998776555443 566666666666555554443 12111111222
Q ss_pred hhhHHHHH-------------HHHHHHHHHHhhHHHHHHHHHHhhhh-------------hhcccchhHHHHHHHHHHHH
Q 006838 530 LESWKTVV-------------SFRVNELIKENSMLRIDVEKVSSDQA-------------NLESKELAVLSVSLFFACFA 583 (629)
Q Consensus 530 l~swks~V-------------SsqLd~l~reN~~LR~~Ve~v~~~q~-------------~mEnK~laVl~isl~f~~la 583 (629)
-+.|...+ -++|+.+.+....+|..++.-..+++ +-+-|+|--..-+..++|=-
T Consensus 509 kq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~ 588 (1118)
T KOG1029|consen 509 KQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEE 588 (1118)
T ss_pred HHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 23333222 34566677777666666544333222 22346677778889999988
Q ss_pred HHHHHHHHHH
Q 006838 584 IFKLVSARLS 593 (629)
Q Consensus 584 ~~~l~~~~~~ 593 (629)
+.|..-|.+.
T Consensus 589 ~yk~e~d~~k 598 (1118)
T KOG1029|consen 589 LYKNERDKLK 598 (1118)
T ss_pred HHHHHHHHHH
Confidence 8887777766
No 76
>PRK11637 AmiB activator; Provisional
Probab=77.70 E-value=29 Score=37.99 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
.+++.++..+..++...+.+..+|...+..-.+.+..++.=+.....+++.+.++-..|+..++++.
T Consensus 187 ~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 187 AELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433444443333333333333333333444455555555555555555443
No 77
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.29 E-value=36 Score=42.21 Aligned_cols=48 Identities=31% Similarity=0.397 Sum_probs=23.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchh
Q 006838 482 KELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSD 529 (629)
Q Consensus 482 Eeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~ 529 (629)
++....+.+.+.++..++.+....++.++++|.++.+.++.....+.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~ 422 (1163)
T COG1196 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLED 422 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444445555555555666666555544444444433
No 78
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=76.92 E-value=21 Score=32.15 Aligned_cols=47 Identities=34% Similarity=0.585 Sum_probs=28.8
Q ss_pred HHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHH
Q 006838 519 WRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAI 584 (629)
Q Consensus 519 ~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f~~la~ 584 (629)
.|+.+++|. ..+..+++...++...||- ||.--..|+.|+||.|+-+
T Consensus 37 ~R~~lE~E~-------~~l~~~l~~~E~eL~~Lrk------------ENrK~~~ls~~l~~v~~Lv 83 (85)
T PF15188_consen 37 ARRSLEKEL-------NELKEKLENNEKELKLLRK------------ENRKSMLLSVALFFVCFLV 83 (85)
T ss_pred HHHHHHHHH-------HHHHHHhhccHHHHHHHHH------------hhhhhHHHHHHHHHHHHHH
Confidence 566777776 4445555666665555554 4555556777777776543
No 79
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=76.91 E-value=59 Score=35.94 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhHHH---HHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 510 KLELEELVKWRETMERGLSDLESWKT---VVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 510 ~aeI~~L~e~K~~~ek~~~~l~swks---~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
++++..+........+.+.+++..-. ..+.++..|.||....+...+.+.++
T Consensus 323 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 323 EAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTR 377 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333222 23567778888887776655555444
No 80
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.90 E-value=5.8 Score=31.51 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=34.8
Q ss_pred HHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 522 TMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 522 ~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
++|+|-.-|++|=..+.+.-+.|.+||..|+.+|..+....
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777777888888999999999999999999998887554
No 81
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.27 E-value=27 Score=43.17 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=11.4
Q ss_pred CCCCCccCChhhhhhhhhccc
Q 006838 179 KVPHHTYLNFDEFRNITRQEK 199 (629)
Q Consensus 179 ~~~~~~~~~~de~k~~~~~~k 199 (629)
+|..+.++.|..+-+.+...-
T Consensus 51 MCHsnL~IeFg~~vNfI~G~N 71 (1074)
T KOG0250|consen 51 MCHSNLLIEFGPRVNFIVGNN 71 (1074)
T ss_pred cccccceeccCCCceEeecCC
Confidence 455555666666666554333
No 82
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.23 E-value=67 Score=37.26 Aligned_cols=68 Identities=22% Similarity=0.285 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 460 LRILMQKVKSLEQNLSVLEDYI-----KELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~Yi-----Eeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
++-+.++++.||..+.-+++-| ++.-+.|.+.+.++++++.++...++..+.+++.+.+..+.+++++
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544 2333444444455555555555555555555555544444444444
No 83
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=76.16 E-value=39 Score=34.01 Aligned_cols=80 Identities=26% Similarity=0.354 Sum_probs=40.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 489 QDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVV---SFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 489 ~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~V---SsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
...+.++..+-.+...-|.+...++.+|...-.+++++-..+..-|+.+ ..+|.+|..++..|..++++|..+-..+
T Consensus 47 ~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 47 EKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555554444555444444444444 4455555555555555555555554444
Q ss_pred ccc
Q 006838 566 ESK 568 (629)
Q Consensus 566 EnK 568 (629)
..|
T Consensus 127 ~~k 129 (201)
T PF13851_consen 127 YRK 129 (201)
T ss_pred HHH
Confidence 443
No 84
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=76.06 E-value=51 Score=28.43 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHH
Q 006838 509 SKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLF 578 (629)
Q Consensus 509 ~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~ 578 (629)
|+.-|..+.++.+.++ .+..+=++|...-...+..-.++++..-+..-|-.+++++.++
T Consensus 19 m~~Ni~~ll~Rge~L~-----------~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~ 77 (89)
T PF00957_consen 19 MRENIDKLLERGEKLE-----------ELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVI 77 (89)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Confidence 4444666666666555 1233445666666666666667776654333333333333333
No 85
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.89 E-value=38 Score=42.54 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhh-----------------hhHHHHHHHHHHHHHHHhhHHHHH
Q 006838 492 FPELDREITRISLLLEKSKLELEELVKWRETMERGLSDL-----------------ESWKTVVSFRVNELIKENSMLRID 554 (629)
Q Consensus 492 f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l-----------------~swks~VSsqLd~l~reN~~LR~~ 554 (629)
+.+++.++..+...++.++.++..+++.++...+++..+ ..=+..+..+|+++..++..++.+
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777776666666666666666655555 112344566777777777777777
Q ss_pred HHHHHhhhhhhcc
Q 006838 555 VEKVSSDQANLES 567 (629)
Q Consensus 555 Ve~v~~~q~~mEn 567 (629)
++.+.+++..++.
T Consensus 904 ~~~~~~~~~~~~~ 916 (1311)
T TIGR00606 904 IKDAKEQDSPLET 916 (1311)
T ss_pred HHHHHHHhhhhhH
Confidence 7777666655543
No 86
>PRK11637 AmiB activator; Provisional
Probab=75.74 E-value=76 Score=34.87 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006838 480 YIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 480 YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
|+..+++.-.+.+.+|..+..++...-..+..++.++.+.+...+.+..+|+.=+..-...++.|..+......++.+++
T Consensus 160 ~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~ 239 (428)
T PRK11637 160 YFGYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELR 239 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555444444444444444444444444444444544445544455666666666666666665
Q ss_pred hhhhhhc
Q 006838 560 SDQANLE 566 (629)
Q Consensus 560 ~~q~~mE 566 (629)
.+.+.++
T Consensus 240 ~~~~~L~ 246 (428)
T PRK11637 240 ANESRLR 246 (428)
T ss_pred HHHHHHH
Confidence 5554444
No 87
>PRK11519 tyrosine kinase; Provisional
Probab=75.61 E-value=57 Score=38.40 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDR 497 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~ 497 (629)
.+.+++..|+..+.-++.=..++.++|+...|.+..
T Consensus 308 ~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~ 343 (719)
T PRK11519 308 AVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRT 343 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH
Confidence 345566666666666666677788888888877764
No 88
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=75.25 E-value=85 Score=37.66 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006838 569 ELAVLSVSLFFACFAIFKLVSARLSTLLRASQ 600 (629)
Q Consensus 569 ~laVl~isl~f~~la~~~l~~~~~~~~~~~~~ 600 (629)
+---..++++++|+.++-+++-.+-.+|+.+.
T Consensus 410 ~~yR~~~~lil~~~llLIv~~~~lGLl~G~~G 441 (806)
T PF05478_consen 410 DSYRWIVGLILCCVLLLIVLCLLLGLLCGCCG 441 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344445555555555555555555555444
No 89
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=75.16 E-value=16 Score=38.96 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHhhhchhhhh----HHHHHHHHHHH
Q 006838 479 DYIKELNQRQQDVFPELDREITRI-----------SLLLEKSKLELEELVKWRETMERGLSDLES----WKTVVSFRVNE 543 (629)
Q Consensus 479 ~YiEeln~ry~~~f~~l~~el~~~-----------~~~Lek~~aeI~~L~e~K~~~ek~~~~l~s----wks~VSsqLd~ 543 (629)
.|-++++..|...|..+..+|.+. +..|..+++..++|+..-..+.-|...++. =....-.|..+
T Consensus 16 ~ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~ 95 (333)
T KOG1853|consen 16 QYWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQ 95 (333)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666555555432 234444455555554433333322221211 11222345667
Q ss_pred HHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 544 LIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 544 l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
|.+|++-++.--+++++-+-.||.
T Consensus 96 Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776666664
No 90
>PRK03918 chromosome segregation protein; Provisional
Probab=74.86 E-value=63 Score=38.11 Aligned_cols=59 Identities=27% Similarity=0.372 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006838 459 VLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVK 518 (629)
Q Consensus 459 VlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e 518 (629)
+.+.+..++..|+..+.-+++-.+.+. .+...+.++.+++..+...++.++..+..+.+
T Consensus 170 ~~~~~~~~~~~l~~~l~~l~~i~~~l~-~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~ 228 (880)
T PRK03918 170 VIKEIKRRIERLEKFIKRTENIEELIK-EKEKELEEVLREINEISSELPELREELEKLEK 228 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655554444333 23344555555555555555555544444443
No 91
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=73.90 E-value=93 Score=30.45 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREI 499 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el 499 (629)
.|...+..+..++ +....+|.+...+.+.+.+|-.|+
T Consensus 31 ~l~~~~~~~~~~~-vtk~d~e~~~~~~~a~~~eLr~el 67 (177)
T PF07798_consen 31 VLNDSLEKVAQDL-VTKSDLENQEYLFKAAIAELRSEL 67 (177)
T ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 456667778778877777766554
No 92
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=73.78 E-value=45 Score=34.99 Aligned_cols=16 Identities=6% Similarity=0.169 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHhhhhh
Q 006838 549 SMLRIDVEKVSSDQAN 564 (629)
Q Consensus 549 ~~LR~~Ve~v~~~q~~ 564 (629)
..|+.++..+.++++.
T Consensus 106 ~~le~el~~l~~~~~~ 121 (239)
T COG1579 106 NSLEDELAELMEEIEK 121 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 93
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=73.65 E-value=1.4e+02 Score=32.29 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 006838 578 FFACFAIFKLVSARLSTLLRASQ 600 (629)
Q Consensus 578 ~f~~la~~~l~~~~~~~~~~~~~ 600 (629)
+|..++++-+...++..+|++-.
T Consensus 258 ~lTv~s~if~pptliagiyGMNf 280 (316)
T PRK11085 258 IFSVVSVVFLPPTLVASSYGMNF 280 (316)
T ss_pred HHHHHHHHHHHHHHHHhhccccc
Confidence 45556666778888888898763
No 94
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.49 E-value=1.1e+02 Score=31.87 Aligned_cols=84 Identities=23% Similarity=0.316 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVN 542 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd 542 (629)
|.+-+..+|..--.|++|-+|.+....+ -..-...|+.|..||..| +..+...++=+........
T Consensus 20 i~~e~~~~e~ee~~L~e~~kE~~~L~~E--------r~~h~eeLrqI~~DIn~l-------E~iIkqa~~er~~~~~~i~ 84 (230)
T PF10146_consen 20 ILQEVESLENEEKCLEEYRKEMEELLQE--------RMAHVEELRQINQDINTL-------ENIIKQAESERNKRQEKIQ 84 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666544433 223333344444444433 1111111222222223334
Q ss_pred HHHHHhhHHHHHHHHHHhh
Q 006838 543 ELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 543 ~l~reN~~LR~~Ve~v~~~ 561 (629)
.+..|-..|+.+|+++|.+
T Consensus 85 r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 85 RLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556777788888888876
No 95
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=73.16 E-value=15 Score=33.85 Aligned_cols=18 Identities=33% Similarity=0.384 Sum_probs=10.8
Q ss_pred HHHHHhhHHHHHHHHHHh
Q 006838 543 ELIKENSMLRIDVEKVSS 560 (629)
Q Consensus 543 ~l~reN~~LR~~Ve~v~~ 560 (629)
.|..||..||.++.++..
T Consensus 40 ~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 40 RLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 355666666666666544
No 96
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=72.45 E-value=43 Score=33.74 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=51.6
Q ss_pred HHHHHhhhhhHHHH---HHHHHHHH-HHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006838 484 LNQRQQDVFPELDR---EITRISLL-LEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 484 ln~ry~~~f~~l~~---el~~~~~~-Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
|-..+..+|.++-. +++.-... +..+|.+|.++....+..+|.+.++..=...++--|..+.+++..|+..+....
T Consensus 3 L~~~He~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 3 LMKNHEKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666655554 55554443 444688888887777777777766655555566666666666666666666555
Q ss_pred hhhhhhcc
Q 006838 560 SDQANLES 567 (629)
Q Consensus 560 ~~q~~mEn 567 (629)
++...|.+
T Consensus 83 kdK~~L~~ 90 (201)
T PF13851_consen 83 KDKQSLQN 90 (201)
T ss_pred HHHHHHHH
Confidence 55544433
No 97
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=72.28 E-value=86 Score=29.33 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh---HHH-------HHHHHHHHHHHhhh
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKS---KLE-------LEELVKWRETMERG 526 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~---~ae-------I~~L~e~K~~~ek~ 526 (629)
.+-.+.+..++...+....-+..-++.+...+..+=.+|+.++-.-...++.+ |++ |..|....+.....
T Consensus 9 ~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~ 88 (132)
T PF07926_consen 9 QSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAE 88 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999999999999999999999998887665555443 333 44444433333333
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006838 527 LSDLESWKTVVSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 527 ~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
+.. =+..-..+-..|.++...+..+++.+.
T Consensus 89 l~~---~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 89 LEE---SEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHH---HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 222333444555555555555555554
No 98
>PRK11820 hypothetical protein; Provisional
Probab=72.23 E-value=36 Score=36.30 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=60.2
Q ss_pred CchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh----hHH----HH--HHHHHHHHHHH--hHHHHHHHHHHHHH
Q 006838 455 PGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVF----PEL----DR--EITRISLLLEK--SKLELEELVKWRET 522 (629)
Q Consensus 455 ~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f----~~l----~~--el~~~~~~Lek--~~aeI~~L~e~K~~ 522 (629)
-|+.+.+.|.+|+..||.-..-.+.+....-..|.+.+ .++ +. =..++..+.+| +.+||..|..+=++
T Consensus 149 EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~qEval~adK~DI~EEi~RL~sHl~~ 228 (288)
T PRK11820 149 EGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLGELDENRLEQEVALLAQKADIAEELDRLKSHLKE 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 47899999999999999887766655444444444333 333 22 12334444444 24444444333333
Q ss_pred HhhhchhhhhHHHHHHHHHHH--------------------HHHHhhHHHHHHHHHHhhhhhhc
Q 006838 523 MERGLSDLESWKTVVSFRVNE--------------------LIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 523 ~ek~~~~l~swks~VSsqLd~--------------------l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
+.+-+..= ..|..+||= +.+-...|+.++|++|+.++|.|
T Consensus 229 f~~~L~~~----~~vGrkLDFL~QEm~RE~NTigSKs~~~~is~~vVe~K~elEkiREQVQNIE 288 (288)
T PRK11820 229 FREILKKG----GPVGRKLDFLMQELNREANTLGSKSNDAEITNLVVELKVLIEQMREQVQNIE 288 (288)
T ss_pred HHHHHhcC----CCCCcchhHHHHHHhHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33222110 123334443 34445678999999998888765
No 99
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=71.89 E-value=53 Score=31.82 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHh
Q 006838 478 EDYIKELNQRQQ 489 (629)
Q Consensus 478 e~YiEeln~ry~ 489 (629)
++|+++|.++..
T Consensus 4 ~efL~~L~~~L~ 15 (181)
T PF08006_consen 4 NEFLNELEKYLK 15 (181)
T ss_pred HHHHHHHHHHHH
Confidence 467777766664
No 100
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.69 E-value=85 Score=37.54 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=27.4
Q ss_pred cCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeecc
Q 006838 242 ASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFE 284 (629)
Q Consensus 242 asnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE 284 (629)
+==||.+|-|.|++.-|-.....=...|+-++.+.=-.-.||.
T Consensus 242 p~~vL~~ng~v~~~~~~l~~~~~~~~~~~gpl~~~p~~~dnyg 284 (717)
T PF10168_consen 242 PIFVLRENGDVYLLYTSLQDENSNLPKLQGPLPMQPPADDNYG 284 (717)
T ss_pred cEEEEecCCCEEEEEEecccCccccceecCceecCCCCcccCC
Confidence 3457789999999888774333334556666665555556664
No 101
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=71.54 E-value=96 Score=32.62 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 498 EITRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 498 el~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
++.....-+..+..+|.++++.++..++++
T Consensus 97 E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 97 EIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444443333333
No 102
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=70.81 E-value=11 Score=31.37 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchh
Q 006838 492 FPELDREITRISLLLEKSKLELEELVKWRETMERGLSD 529 (629)
Q Consensus 492 f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~ 529 (629)
+.++|+++.+++..+.++|.++.++.+.=+.+++-+.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666665544444433333
No 103
>PRK00846 hypothetical protein; Provisional
Probab=70.38 E-value=21 Score=31.57 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELV 517 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~ 517 (629)
-+-+||-.||+-+.-.++-||+||.-- ...++.+.++...|+-++..++++.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v----~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEAL----ADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367999999999999999999999765 5567777777777777776676664
No 104
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=70.37 E-value=47 Score=31.17 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVE 556 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve 556 (629)
.+++..+.....-||..|....+|...|+....-+.-|+.=+..+...+++|++..+-+|..|+
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666777777777776666665544433433334444444444444444444443
No 105
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=70.31 E-value=86 Score=39.07 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVF----------PELDREITRISLLLEKSKLELEELVK 518 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f----------~~l~~el~~~~~~Lek~~aeI~~L~e 518 (629)
++-.+.+|+.||..+-.+++-|+++...|.... ..+++.|..+...|+.++.++.+++.
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~ 511 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKA 511 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999998888887332 33444455555555555555544443
No 106
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=70.29 E-value=70 Score=38.46 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH--------------
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYI---KELNQRQQDVFPELDREITRISLLLEKSKLELEELVKW-------------- 519 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~Yi---Eeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~-------------- 519 (629)
|++.+-+.++|+.|++..--|.+-+ |+..+.+...+..+..++.+...-+-+.++++.+|.++
T Consensus 487 etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~D 566 (961)
T KOG4673|consen 487 ETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSD 566 (961)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 6666667777777777766665544 66777777888888878877777777776666666542
Q ss_pred --HHHHhh--hchh--------hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccch
Q 006838 520 --RETMER--GLSD--------LESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKEL 570 (629)
Q Consensus 520 --K~~~ek--~~~~--------l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~l 570 (629)
|++-.| ++++ ....+..++..=.+++|--.+||-+++.++.+.+.-|+++=
T Consensus 567 lqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~e 629 (961)
T KOG4673|consen 567 LQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCE 629 (961)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 1111 12234566666677788889999999999998888777754
No 107
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.25 E-value=18 Score=30.66 Aligned_cols=51 Identities=35% Similarity=0.454 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELV 517 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~ 517 (629)
|-+||-.||.-+.-.++-|++||.-- .+-++++.++...|..++..|+++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v----~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVV----TEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999999998754 6677777777777777777777764
No 108
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=70.22 E-value=72 Score=27.60 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
.++..-...+...|++...+++++.+-....+ .-++ ..+-.+|.++.+++..+..++.+++++...|+
T Consensus 24 ~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~--~~~~----~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 24 QELRQSQEELLQQIDRLNEKLKELNEVEQINE--PFDL----DPYVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444455555555555555544222221 1111 22677888999999999999999888876664
No 109
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=70.04 E-value=54 Score=34.78 Aligned_cols=100 Identities=15% Similarity=0.327 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHh--HHHHHHHHHHHH--HHhhhchhhhhHHHHHHHHHHHHHHHhhHH
Q 006838 477 LEDYIKELNQRQQDVFPELDR-EITRISLLLEKS--KLELEELVKWRE--TMERGLSDLESWKTVVSFRVNELIKENSML 551 (629)
Q Consensus 477 le~YiEeln~ry~~~f~~l~~-el~~~~~~Lek~--~aeI~~L~e~K~--~~ek~~~~l~swks~VSsqLd~l~reN~~L 551 (629)
-+.|+-+.|......+.+.|+ --.++..+|++- =+.+-+..+.+. .++.--.||++|+...++.+..|+++...|
T Consensus 14 h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l 93 (258)
T PF15397_consen 14 HEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQL 93 (258)
T ss_pred HHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456788888888888888887 456677777662 122223333211 122223467788888888888888888888
Q ss_pred HHHHHHHHhhhhhh---cccchhHHHHH
Q 006838 552 RIDVEKVSSDQANL---ESKELAVLSVS 576 (629)
Q Consensus 552 R~~Ve~v~~~q~~m---EnK~laVl~is 576 (629)
-.+|.+.++++..+ ..+++-|-+++
T Consensus 94 ~akI~k~~~el~~L~TYkD~EYPvK~vq 121 (258)
T PF15397_consen 94 DAKIQKTQEELNFLSTYKDHEYPVKAVQ 121 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 88887777776544 34667665554
No 110
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.95 E-value=61 Score=32.04 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQ---RQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVS 538 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~---ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VS 538 (629)
.++.+++.|+.-++-...=|.++.. .+.....+++.++......++.++.|+..|+ ++ -..+.
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~-----l~---------~~~~e 164 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ-----LQ---------LNMLE 164 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH---------HHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH---------HHHHH
Confidence 3445555555554444444443333 2334445666666666666666666655552 22 25667
Q ss_pred HHHHHHHHHhhHHHHHH
Q 006838 539 FRVNELIKENSMLRIDV 555 (629)
Q Consensus 539 sqLd~l~reN~~LR~~V 555 (629)
.++..|..||..|=.|.
T Consensus 165 ~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 165 EKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899999999887775
No 111
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=69.54 E-value=44 Score=31.54 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 492 FPELDREITRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 492 f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
+..|...+.+...-+..++.++..|...|+....|+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666666666666666655
No 112
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=69.31 E-value=54 Score=29.76 Aligned_cols=68 Identities=25% Similarity=0.324 Sum_probs=36.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhchhh-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh--hcccch
Q 006838 501 RISLLLEKSKLELEELVKWRETMERGLSDL-ESWKTVVSFRVNELIKENSMLRIDVEKVSSDQAN--LESKEL 570 (629)
Q Consensus 501 ~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l-~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~--mEnK~l 570 (629)
.+...++++-.+|.-+-..|-... +..| .|.......+++.|.+++..|..++++++..... .|.+.+
T Consensus 12 ev~~~ve~vA~eLh~~YssKHE~K--V~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 12 EVEKAVEKVARELHALYSSKHETK--VKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444555544442222 2222 2334566667777777777777777777765433 344444
No 113
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=69.21 E-value=94 Score=30.98 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 475 SVLEDYIKELNQRQQDVFPELDREITRISLLL 506 (629)
Q Consensus 475 Slle~YiEeln~ry~~~f~~l~~el~~~~~~L 506 (629)
.++...+..+...|...+..+++++.++...+
T Consensus 110 ~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~ 141 (292)
T PF01544_consen 110 DLLYAILDEIVDDYFEVLEELEDELDELEDEL 141 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455555555555555555555555444
No 114
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=69.10 E-value=30 Score=39.36 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 492 FPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 492 f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+.+++..+..+..+.+|-...+.++.++++.+.+++..+ ......++++..+...++.+++++..+.
T Consensus 303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l----~~~~~~le~L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQL----DDSDESLEALEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555455666666666666666554 3334455556666666666665555444
No 115
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.05 E-value=1.6e+02 Score=32.08 Aligned_cols=97 Identities=18% Similarity=0.234 Sum_probs=48.6
Q ss_pred chhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHh
Q 006838 456 GDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL-----------VKWRETME 524 (629)
Q Consensus 456 gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L-----------~e~K~~~e 524 (629)
++.++.-|-+++..||..+ .++.++|+...|++..--.++..+-+.++.+++.+ ........
T Consensus 252 ~~~~i~~l~~~l~~le~~l-------~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~ 324 (444)
T TIGR03017 252 ANPIIQNLKTDIARAESKL-------AELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELR 324 (444)
T ss_pred cChHHHHHHHHHHHHHHHH-------HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777776554 45566677766665442222222222222222222 11222222
Q ss_pred hhchhhhhHHHHH------HHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 525 RGLSDLESWKTVV------SFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 525 k~~~~l~swks~V------SsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
.. +..|+..+ ..++..|+||...-|.-.+.+.++.
T Consensus 325 ~~---l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 325 EA---LENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22333322 4567788888777776665555543
No 116
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.79 E-value=80 Score=38.19 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTV 536 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~ 536 (629)
.+.-+-|..++..|+..-.-++-=+.+....+ ..+...|......|+.++++|....+.+..++-++..+..=+..
T Consensus 588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~l----E~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~ 663 (769)
T PF05911_consen 588 TSEKKELEEELEKLESEKEELEMELASCQDQL----ESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYES 663 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888887776665544444433 66677777888888888888888888888888877777777777
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 537 VSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+.+++.++..++..|+..|..+..++
T Consensus 664 le~~~~~~e~E~~~l~~Ki~~Le~El 689 (769)
T PF05911_consen 664 LETRLKDLEAEAEELQSKISSLEEEL 689 (769)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666666666666665554
No 117
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.78 E-value=54 Score=33.45 Aligned_cols=54 Identities=9% Similarity=-0.050 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLS 593 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f~~la~~~l~~~~~~ 593 (629)
..+.++|.+++..++.+++.++.+..+++.....=.++-. |.+|++-|.+++++
T Consensus 138 ~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~G--g~v~~~GlllGlil 191 (206)
T PRK10884 138 KEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYG--GGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--hHHHHHHHHHHHHh
Confidence 3444444444455555554444444444433322211111 23455556677776
No 118
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=68.50 E-value=29 Score=37.06 Aligned_cols=112 Identities=15% Similarity=0.246 Sum_probs=59.8
Q ss_pred CchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh----hHH-----HH--HHHHHHHHHHH--hHHHHHHHHHHHH
Q 006838 455 PGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVF----PEL-----DR--EITRISLLLEK--SKLELEELVKWRE 521 (629)
Q Consensus 455 ~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f----~~l-----~~--el~~~~~~Lek--~~aeI~~L~e~K~ 521 (629)
-|+.+.+.|.+|+..|+.-..-.+.+....-..|.+.+ .++ +. =..++..+.+| +..||..|..+=+
T Consensus 151 EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el~~~~id~~Rl~qEval~adK~DI~EEl~RL~sHl~ 230 (291)
T TIGR00255 151 EGENLKSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDLAQEFLDLNRLEQEAALLAQRIDIAEEIDRLDSHVK 230 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 47899999999999999887766655444444444333 233 21 22344444554 2344433333322
Q ss_pred HHhhhchhhhh-----------H---HHHHHHHHHH--HHHHhhHHHHHHHHHHhhhhhhc
Q 006838 522 TMERGLSDLES-----------W---KTVVSFRVNE--LIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 522 ~~ek~~~~l~s-----------w---ks~VSsqLd~--l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
++.+-+..-.. - --++.++-.+ +.+-...|+.++|++|+.++|.|
T Consensus 231 ~f~~~L~~~~~vGrkLDFL~QEmnRE~NTigSKs~d~~is~~vVe~K~eiEkiREQVQNIE 291 (291)
T TIGR00255 231 EFYNILKKGEAVGRKLDFMMQELNRESNTLASKAIDADITNLAVEMKVLIEKIKEQIQNIE 291 (291)
T ss_pred HHHHHHhcCCCcCcchhHHHHHHhHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22222211000 0 0222333322 44555678999999998888765
No 119
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=68.48 E-value=22 Score=33.20 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006838 491 VFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKV 558 (629)
Q Consensus 491 ~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v 558 (629)
.|..|+..+..+...+..+|..|.+|+|-- ..|..||..||.++.++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN---------------------~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEEN---------------------TALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555554322 34567778888888776
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.39 E-value=1.6e+02 Score=31.86 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 006838 466 KVKSLEQNLSVLEDYIKELNQRQQDVFP---ELDREITRISLLLEKSKLELEELVKWRETME 524 (629)
Q Consensus 466 KvksLE~N~Slle~YiEeln~ry~~~f~---~l~~el~~~~~~Lek~~aeI~~L~e~K~~~e 524 (629)
|++.||-=...|++.++.|..-+....+ -++.-+-.+......++.++..|++.++.++
T Consensus 138 R~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4555555555666666666555422111 1111222222223334555666666555553
No 121
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=68.11 E-value=93 Score=29.23 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 006838 571 AVLSVSLFFACFAIFKLVSARLS 593 (629)
Q Consensus 571 aVl~isl~f~~la~~~l~~~~~~ 593 (629)
....+|.++.|+.++-+.++-+.
T Consensus 67 ~~~~~s~ll~~l~i~~lf~~~~~ 89 (130)
T PF11026_consen 67 TLATLSALLVCLVILLLFLSALL 89 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777778887777775554
No 122
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=68.02 E-value=55 Score=29.32 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=33.0
Q ss_pred HHHHHHHH---hHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 501 RISLLLEK---SKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 501 ~~~~~Lek---~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
++-.+++. ++-+|.+|.+.......++..+ .+.-+.|.++|..|+.+-..-+++.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~-------~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA-------QHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 4678888888888887777333 4445556666666665554444443
No 123
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=68.02 E-value=2.9 Score=33.03 Aligned_cols=16 Identities=56% Similarity=1.039 Sum_probs=13.5
Q ss_pred chhhHHHHHHhchhhh
Q 006838 144 SRLEEVIWKVLNYAAL 159 (629)
Q Consensus 144 ~~~e~~~~~~~~~~~~ 159 (629)
+.+|+++||++||.+-
T Consensus 2 StLEsviWHilGY~Am 17 (42)
T TIGR02808 2 STLESTIWHVLGYGAM 17 (42)
T ss_pred chHHHHHHHHhccccc
Confidence 3579999999999873
No 124
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.88 E-value=68 Score=28.72 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=31.3
Q ss_pred HHHHHhHHH-HHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006838 504 LLLEKSKLE-LEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 504 ~~Lek~~ae-I~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
.+++..+.+ +..|.++.+.+++++ ..+..+++.+..+...++.++.+++
T Consensus 55 vfv~~~~~ea~~~Le~~~e~le~~i-------~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 55 VLVKQEKEEARTELKERLETIELRI-------KRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455 455555666666555 5667778888888888887776654
No 125
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.75 E-value=59 Score=28.79 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006838 510 KLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 510 ~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
.-+|.+|.|-+.....+. +....+.++|.|+|.-|..+-..-+
T Consensus 24 QmEieELKEknn~l~~e~-------q~~q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 24 QMEIEELKEKNNSLSQEV-------QNAQHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHhhHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777666666555 3334555666666666655543333
No 126
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=67.65 E-value=37 Score=31.38 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 539 FRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 539 sqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
..||.+.||-..=....++.+++..++.
T Consensus 46 ~tlD~i~reRe~dee~k~~n~Knir~~K 73 (98)
T PF11166_consen 46 RTLDEINREREEDEENKKKNDKNIRDIK 73 (98)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3445555554443344444444444443
No 127
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=67.27 E-value=1.5e+02 Score=30.03 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
..+..+.+....+...|.++++.+.++..++|-
T Consensus 148 ~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 148 AKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666666655543
No 128
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=66.75 E-value=3.2 Score=32.83 Aligned_cols=16 Identities=69% Similarity=1.149 Sum_probs=13.4
Q ss_pred chhhHHHHHHhchhhh
Q 006838 144 SRLEEVIWKVLNYAAL 159 (629)
Q Consensus 144 ~~~e~~~~~~~~~~~~ 159 (629)
+.+|+++||+|||.+-
T Consensus 2 StlEsviWhvLGY~Am 17 (42)
T PF09574_consen 2 STLESVIWHVLGYAAM 17 (42)
T ss_pred chHHHHHHHHhccccc
Confidence 3579999999999873
No 129
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=66.48 E-value=84 Score=29.13 Aligned_cols=68 Identities=16% Similarity=0.279 Sum_probs=43.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHH
Q 006838 464 MQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKT 535 (629)
Q Consensus 464 mqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks 535 (629)
--|++.||.|--..-.-+.+...-+ .+.++=..+.+.-|+.++.|=+.-.+.++.-+|.+.|++.|-.
T Consensus 10 e~Ri~rLEendk~i~~~L~~Ik~gq----~~qe~v~~kld~tlD~i~reRe~dee~k~~n~Knir~~Kmwil 77 (98)
T PF11166_consen 10 EWRIRRLEENDKTIFNKLDEIKDGQ----HDQELVNQKLDRTLDEINREREEDEENKKKNDKNIRDIKMWIL 77 (98)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhH----hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3578888888776666666555444 4445555566666677766644445566677777777766654
No 130
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=66.17 E-value=1.3e+02 Score=33.14 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSF 539 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSs 539 (629)
+-.+.+-.++++..+.....|++.+..-.+..+.+++..=.-+...|+.+..+.+..++.-..+.+ =-...|.
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~-------~y~~~s~ 294 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQE-------KYKQASE 294 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHhh
Confidence 344455556667777777788888777777777777666555566666554444443332222221 1133444
Q ss_pred HHHHHHHHhhHHHHHHHHHHhh
Q 006838 540 RVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 540 qLd~l~reN~~LR~~Ve~v~~~ 561 (629)
-+..+.++.+.+..++|++..+
T Consensus 295 ~V~~~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 295 GVSERTRELAEISEELEQVKQE 316 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555533
No 131
>PRK02793 phi X174 lysis protein; Provisional
Probab=66.06 E-value=28 Score=29.92 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
+-+||-.||.-++-.++=|++||.-- ..-++++..+...|..++..|+++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v----~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTV----TAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67899999999999999999998754 566666666666666666556554
No 132
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.46 E-value=42 Score=38.36 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=18.8
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhhhhHHHH
Q 006838 450 PIGRIPGDTVLRILMQKVKSLEQNLSVLED 479 (629)
Q Consensus 450 ~~~r~~gdSVlKiLmqKvksLE~N~Slle~ 479 (629)
..|-.|.||| +.|.-++|+++..+-.+.+
T Consensus 52 iegDTP~DTl-rTlva~~k~~r~~~~~l~~ 80 (472)
T TIGR03752 52 IEGDTPADTL-RTLVAEVKELRKRLAKLIS 80 (472)
T ss_pred CCCCCccchH-HHHHHHHHHHHHHHHHHHH
Confidence 3455677775 6777777777766655543
No 133
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=65.19 E-value=70 Score=34.32 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHH---HHHHHHHHHhhHHHHHH
Q 006838 479 DYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVS---FRVNELIKENSMLRIDV 555 (629)
Q Consensus 479 ~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VS---sqLd~l~reN~~LR~~V 555 (629)
.=+..+=.-|++.|.+++.-|++-......-|.++..+...-..++|+- ..|++... .-|-+++-+...+..++
T Consensus 212 ~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~---~~~k~k~e~~n~~l~~m~eer~~~~~~~ 288 (309)
T PF09728_consen 212 KELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKEN---QTWKSKWEKSNKALIEMAEERQKLEKEL 288 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3345666789999999999999999999999999999887767788776 67888763 34555566666666666
Q ss_pred HHHHhhhhhhc
Q 006838 556 EKVSSDQANLE 566 (629)
Q Consensus 556 e~v~~~q~~mE 566 (629)
+.+......||
T Consensus 289 ~~~~~k~~kLe 299 (309)
T PF09728_consen 289 EKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHH
Confidence 66555554444
No 134
>PRK01156 chromosome segregation protein; Provisional
Probab=65.09 E-value=1e+02 Score=36.80 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=5.5
Q ss_pred HHHHhhhhhHHHH
Q 006838 467 VKSLEQNLSVLED 479 (629)
Q Consensus 467 vksLE~N~Slle~ 479 (629)
++.++..+.-++.
T Consensus 596 l~~l~~~l~~le~ 608 (895)
T PRK01156 596 LNDLESRLQEIEI 608 (895)
T ss_pred HHHHHhhHHHHHH
Confidence 3444444444443
No 135
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=64.82 E-value=82 Score=41.36 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH--------HHHhhhchhhhh
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWR--------ETMERGLSDLES 532 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K--------~~~ek~~~~l~s 532 (629)
..|+..+..|+.-.-.+++--.+.-+++...+.+|+.++.+...-+++...+++++.... ..++-.-.++.+
T Consensus 776 ~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~ 855 (1822)
T KOG4674|consen 776 ESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKS 855 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 445556666666666667766777777888888888888888888888777777765432 223333344455
Q ss_pred HHHHHHH---HHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 533 WKTVVSF---RVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 533 wks~VSs---qLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
|+..++. -.+.|......|-.+|+.+.....+|.+
T Consensus 856 ~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~ 893 (1822)
T KOG4674|consen 856 LLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDS 893 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Confidence 5554432 2333334444444455555555555554
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=64.68 E-value=64 Score=35.67 Aligned_cols=71 Identities=28% Similarity=0.504 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPE----LDREITRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~----l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
.+..++|.++++.++..+.-.+.-+.++-++++..+++ +..+++.+...+...++++.+++.+.+.+.+.+
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999998888765543 445667777777777888887777776666543
No 137
>PRK04406 hypothetical protein; Provisional
Probab=64.22 E-value=36 Score=29.62 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
-|-+||-.||.-++-.++=|++||.-- ..-++++..+...|..++..++++
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v----~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDAL----SQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477899999999999999999999765 555666666666666665555544
No 138
>PRK09039 hypothetical protein; Validated
Probab=64.09 E-value=1.3e+02 Score=32.60 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQR---QQDVFPELDREITRISLLLEK 508 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~r---y~~~f~~l~~el~~~~~~Lek 508 (629)
|-+.|.-+|..+.-|+..|-+|... ....-.+++.++..+...++.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~ 92 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSA 92 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4466666666666666666665522 222234444444444444443
No 139
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.78 E-value=1.3e+02 Score=37.88 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHH--HHHhhHHHHHHHHHH
Q 006838 497 REITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNEL--IKENSMLRIDVEKVS 559 (629)
Q Consensus 497 ~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l--~reN~~LR~~Ve~v~ 559 (629)
.++..+..-++.+.+++..+.+.-+.+.+++.++..=+..+...|+.+ .++...+..+++.+.
T Consensus 977 ~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~ 1041 (1311)
T TIGR00606 977 TELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL 1041 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344433333334444444444444444333333 333333333333333
No 140
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=63.64 E-value=27 Score=38.69 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQR 487 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~r 487 (629)
.|.++++.|+..+.-+...++++.+.
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 141
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=63.56 E-value=1.6e+02 Score=29.26 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhH
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAV 572 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laV 572 (629)
..+..+++.+......|+..+.++..+...|++|.-.+
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777777777776544
No 142
>PRK02119 hypothetical protein; Provisional
Probab=63.56 E-value=39 Score=29.24 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
-+-+||-.||.-++-.++=|++||.-- ..-++++..+...|..++..|+++
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v----~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQAL----IEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999755 566666666666666666556554
No 143
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=63.47 E-value=79 Score=28.32 Aligned_cols=76 Identities=16% Similarity=0.098 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 492 FPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 492 f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
++.++.++.++...+.+...++..+.+.+-.+.-|..--..=-..+....|.+..|+..|+.-+.+-++.++.++.
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4667777777777777777777777666555554443332223455777889999999999888888877777665
No 144
>PRK04325 hypothetical protein; Provisional
Probab=63.31 E-value=39 Score=29.20 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
+.+||-.||.-+.-.++=|++||.-- .+-++++.++...|..+...|+++
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv----~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATV----ARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66899999999999999999998755 566666666666666665555554
No 145
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=63.31 E-value=1.2e+02 Score=32.54 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=13.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 541 VNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 541 Ld~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
+-+.+.+...|...++..++....++.-.
T Consensus 108 l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 108 LIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444555555555555444444433
No 146
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=63.22 E-value=74 Score=31.47 Aligned_cols=54 Identities=9% Similarity=0.162 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 509 SKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 509 ~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+.+.+.+|.++|+.+.++...|.+=...+...|..-.-+...|+.+++.+++.+
T Consensus 126 ~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 126 VQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 345577788888888888877776666666666666667777777777777655
No 147
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.99 E-value=64 Score=37.86 Aligned_cols=48 Identities=23% Similarity=0.192 Sum_probs=32.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHH-HHHHHH
Q 006838 471 EQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLE-LEELVK 518 (629)
Q Consensus 471 E~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~ae-I~~L~e 518 (629)
+-..++|.+|++.+...|-..--.+..+|.+-...|.-.+.+ +++|++
T Consensus 558 ~E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~ 606 (741)
T KOG4460|consen 558 EECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSY 606 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556789999999999999777666666666665555554333 444444
No 148
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=62.98 E-value=52 Score=35.33 Aligned_cols=85 Identities=21% Similarity=0.139 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHH
Q 006838 498 EITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSL 577 (629)
Q Consensus 498 el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl 577 (629)
.|......|..+...|..|+..-+...++...++.--...+.+|+...+-...|..+-.+=.+....++.+.-.++.=||
T Consensus 236 ~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~l 315 (344)
T PF12777_consen 236 QLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSL 315 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHH
Confidence 33333333333333344443333333333333444446667888888888888988888888888888777777766666
Q ss_pred HHHHH
Q 006838 578 FFACF 582 (629)
Q Consensus 578 ~f~~l 582 (629)
+-+++
T Consensus 316 laaa~ 320 (344)
T PF12777_consen 316 LAAAF 320 (344)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 149
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=62.84 E-value=1.1e+02 Score=33.90 Aligned_cols=41 Identities=10% Similarity=0.270 Sum_probs=27.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 006838 486 QRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERG 526 (629)
Q Consensus 486 ~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~ 526 (629)
..+......++.++..+...+...+.+++.+...++.++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 201 (457)
T TIGR01000 161 DKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNG 201 (457)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444445677777777777777777777777777666554
No 150
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=62.57 E-value=65 Score=32.50 Aligned_cols=6 Identities=17% Similarity=0.290 Sum_probs=2.4
Q ss_pred HHHHHh
Q 006838 593 STLLRA 598 (629)
Q Consensus 593 ~~~~~~ 598 (629)
..+|..
T Consensus 154 ~~ifpI 159 (302)
T PF10186_consen 154 SEIFPI 159 (302)
T ss_pred HHHhCc
Confidence 334443
No 151
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=62.56 E-value=2.1e+02 Score=30.22 Aligned_cols=110 Identities=15% Similarity=0.280 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHhh
Q 006838 458 TVLRILMQKVKSLEQNLS-----VLEDYIKELNQR---QQDVFPELDREITRISLLLEKSKLELE----ELVKWRETMER 525 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~S-----lle~YiEeln~r---y~~~f~~l~~el~~~~~~Lek~~aeI~----~L~e~K~~~ek 525 (629)
+++..+-.|-|+||.++. +++.+|-.|.++ .......||++.++-- .+.|+||+ +...++....|
T Consensus 71 ~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~wkk~~~~ldKd~~k~~---kk~R~elKk~~~dt~klqkk~rK 147 (231)
T cd07643 71 SALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEEWKKVANQLDKDHAKEY---KKARQEIKKKSSDTIRLQKKARK 147 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHhc
Confidence 566667778888988764 445555555555 2334455666655543 44555555 44556666777
Q ss_pred hchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhh----hhhhcccchhHHHHHH
Q 006838 526 GLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSD----QANLESKELAVLSVSL 577 (629)
Q Consensus 526 ~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~----q~~mEnK~laVl~isl 577 (629)
+-++ +..|||...+|....+..+|++... .-.+|-+.+|.|+.+|
T Consensus 148 g~~~-------~~~~ldsa~~dvn~k~~~lEe~ek~alR~aLiEER~Rfc~Fvs~l 196 (231)
T cd07643 148 GKGD-------LQPQLDSAMQDVNDKYLLLEETEKKAVRNALIEERGRFCTFVSFL 196 (231)
T ss_pred cCCc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6644 5688999988888777777765432 2245666666666554
No 152
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=62.15 E-value=1.9e+02 Score=29.53 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHhHHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVF---PELDREITRISLLLEKSKLELEELV 517 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f---~~l~~el~~~~~~Lek~~aeI~~L~ 517 (629)
.-.||..||.-+.-...-.++..++|..+- ..++.++.+...-++..-..|.+|.
T Consensus 90 ~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE 147 (237)
T PF00261_consen 90 DEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELE 147 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Confidence 344555555555555555555555554442 2233344444444444433344443
No 153
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=61.94 E-value=1.5e+02 Score=31.64 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPEL 495 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l 495 (629)
.+-|++-|++.|-+.-.-=|=+=.....|+.+..-|
T Consensus 22 N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~l 57 (258)
T PF15397_consen 22 NKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDIL 57 (258)
T ss_pred hHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444333333333333444444333
No 154
>PRK10869 recombination and repair protein; Provisional
Probab=61.92 E-value=51 Score=37.86 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
.+++..+..+..+-+|-...+.++.++++.+++++.++ ......++.|..+-..++.++.+...+.
T Consensus 299 ~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L----~~~e~~l~~Le~e~~~l~~~l~~~A~~L 364 (553)
T PRK10869 299 AELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQL----DDQEDDLETLALAVEKHHQQALETAQKL 364 (553)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555554445666666666666666554 2233334444444445555554444443
No 155
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=61.84 E-value=1.3e+02 Score=32.00 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVN 542 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd 542 (629)
..+-+..|+..+.-++.=+.++.+.|++-.|++..--.++..+-..+..+.+.+.... . ..+ .....+++
T Consensus 212 ~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~---~---~~l----~~~~~~~~ 281 (362)
T TIGR01010 212 QLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGL---G---DSL----NEQTADYQ 281 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCC---C---ccH----HHHHHHHH
Confidence 3444555555566666666666666666555554433333333333333222222110 0 011 33345677
Q ss_pred HHHHHhhHHHHHHHHHH
Q 006838 543 ELIKENSMLRIDVEKVS 559 (629)
Q Consensus 543 ~l~reN~~LR~~Ve~v~ 559 (629)
.|+||...-+.-.+.+.
T Consensus 282 ~L~re~~~a~~~y~~~l 298 (362)
T TIGR01010 282 RLVLQNELAQQQLKAAL 298 (362)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776555554333
No 156
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=61.51 E-value=2.1e+02 Score=34.38 Aligned_cols=20 Identities=15% Similarity=0.472 Sum_probs=15.0
Q ss_pred CccchhhhhhhhHHHHhhhc
Q 006838 608 NRGWVLILLSSSMTIFVTLL 627 (629)
Q Consensus 608 ~~~w~~ll~ss~~~~fi~~l 627 (629)
.--|+.-++-|+++++|+++
T Consensus 411 ~yR~~~~lil~~~llLIv~~ 430 (806)
T PF05478_consen 411 SYRWIVGLILCCVLLLIVLC 430 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44688888888888877653
No 157
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=61.41 E-value=1.1e+02 Score=31.58 Aligned_cols=54 Identities=24% Similarity=0.437 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhh-hhH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 462 ILMQKVKSLEQN-LSV---LEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 462 iLmqKvksLE~N-~Sl---le~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
-|.+|++..|.. +++ -.+-+.|+|++....+.++. .|..+..-|+.=+.+|++|
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR-~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIR-GLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 478899999876 333 34678999999888887774 4555555555555666665
No 158
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=61.29 E-value=71 Score=27.04 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
.++++++.++..-+.++..++..+.......+++ -..+..+++++...++|.--
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~---------------------i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKD---------------------IKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777666666663333333322 23455567777777776543
No 159
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=61.18 E-value=2.1e+02 Score=29.69 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHH
Q 006838 475 SVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRV 541 (629)
Q Consensus 475 Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqL 541 (629)
....++-+++...|...+.++.....+....+...+.++.++.-.-..+..++..++.=+..+..++
T Consensus 180 ~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 180 EIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 4556677777777777777777666666666666555555554444444444444443333333333
No 160
>PRK00736 hypothetical protein; Provisional
Probab=60.91 E-value=48 Score=28.27 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
+-+||-.||.-+.-.++=||+||.-- ..-++++..+...|+.+...++++
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v----~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQL----AEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999998755 555666666666666665555554
No 161
>PRK00295 hypothetical protein; Provisional
Probab=60.81 E-value=49 Score=28.22 Aligned_cols=50 Identities=30% Similarity=0.369 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
+-+||-.||.-+.-.++=|++||.-- ..-++++..+...|..++..++++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v----~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVL----VEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56799999999999999999998755 556666666666666666666665
No 162
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.58 E-value=2.1e+02 Score=30.10 Aligned_cols=57 Identities=11% Similarity=0.229 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHH----------HHHHhhhh-------hHHHHHHHHHHHHHHHhHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKEL----------NQRQQDVF-------PELDREITRISLLLEKSKLEL 513 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEel----------n~ry~~~f-------~~l~~el~~~~~~Lek~~aeI 513 (629)
+--|--+-+++..|+.+++.+++...-+ ...|+.++ ++|.+.|+.+..++++.-+.+
T Consensus 53 ~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~ 126 (243)
T cd07666 53 PEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKAT 126 (243)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 3347777888888888888888777633 34455555 347777888888888543333
No 163
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=60.39 E-value=1.3e+02 Score=34.56 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=6.1
Q ss_pred hhhhhHHHHHHHHHH
Q 006838 471 EQNLSVLEDYIKELN 485 (629)
Q Consensus 471 E~N~Slle~YiEeln 485 (629)
|.|...+.+|++.+.
T Consensus 309 ek~~~~l~~~l~~~~ 323 (569)
T PRK04778 309 EKNSDTLPDFLEHAK 323 (569)
T ss_pred HHhhHHHHHHHHHHH
Confidence 334444444444333
No 164
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=60.08 E-value=1e+02 Score=27.66 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry 488 (629)
.+....|...++....-+.+.+++++++|
T Consensus 30 N~~~~~kY~~~~~~~~~l~~~~~~l~~k~ 58 (99)
T PF10046_consen 30 NKATSLKYKKMKDIAAGLEKNLEDLNQKY 58 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555
No 165
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=60.06 E-value=1.9e+02 Score=28.93 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchh-hhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSD-LESWKTVVSFRVNELIKENSMLRIDVEK 557 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~-l~swks~VSsqLd~l~reN~~LR~~Ve~ 557 (629)
.+++.++..+..-++.++.++.++....+.++|...+ ..........+++.|.+.|.-|+..+++
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555555566665555555555543 4555566677777777777777776653
No 166
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=60.05 E-value=76 Score=37.42 Aligned_cols=106 Identities=14% Similarity=0.190 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh------------hhhHHHHHHHHHHHHHHHhHH-------HHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQD------------VFPELDREITRISLLLEKSKL-------ELEELV 517 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~------------~f~~l~~el~~~~~~Lek~~a-------eI~~L~ 517 (629)
..-..+|-+|+..|+..+.-.|+=+++.-++++- .+.+++.++......+..+.+ .+..+.
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~ 345 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALL 345 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence 3457889999999999999988888887776632 122333333333222222111 122333
Q ss_pred HHHHHHhhhchhhhhHH---HHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 518 KWRETMERGLSDLESWK---TVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 518 e~K~~~ek~~~~l~swk---s~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+++.++.+++.+++.=- ...+.++.+|.||-...|.--+.+.+++
T Consensus 346 ~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~ 393 (726)
T PRK09841 346 EKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQ 393 (726)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433332111 1225566677777777666665554443
No 167
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=59.66 E-value=24 Score=32.22 Aligned_cols=32 Identities=9% Similarity=0.282 Sum_probs=16.2
Q ss_pred HHHHHHHHHH--HHHhhHHHHHHHHHHhhhhhhc
Q 006838 535 TVVSFRVNEL--IKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 535 s~VSsqLd~l--~reN~~LR~~Ve~v~~~q~~mE 566 (629)
+.+++++++| ..|...|+.++.+|+.+...|+
T Consensus 52 ~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 52 QALETKLEHLPTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444555555 5555555555555555444443
No 168
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=59.66 E-value=1.2e+02 Score=33.05 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
..+..+++.|.++...+...+++++.+-.++||
T Consensus 138 ~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn 170 (310)
T PF09755_consen 138 NKLQKKIERLEKEKSAKQEELERLRREKVDLEN 170 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Confidence 344556666666666666666666665555555
No 169
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=59.49 E-value=1.7e+02 Score=29.82 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKS 509 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~ 509 (629)
|.-...|+..+|..+--.+.=++...++. .+|+.+|..+..-|..+
T Consensus 115 ~~E~~rkl~~~E~~Le~aEeR~e~~E~ki----~eLE~el~~~~~~lk~l 160 (237)
T PF00261_consen 115 YEEVERKLKVLEQELERAEERAEAAESKI----KELEEELKSVGNNLKSL 160 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhH----HHHHHHHHHHHHHHHHh
Confidence 34444444444444444443333333332 44555554444444443
No 170
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.38 E-value=1e+02 Score=26.73 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWR 520 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K 520 (629)
..|+..+.+...-+.-++.++.+|.+..
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433333333344455555554443
No 171
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=59.28 E-value=87 Score=28.39 Aligned_cols=82 Identities=21% Similarity=0.317 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhhhchhhhhHHHHH
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQR--QQDVFPELDREITRISLLLEKSKLE-LEELVKWRETMERGLSDLESWKTVV 537 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~r--y~~~f~~l~~el~~~~~~Lek~~ae-I~~L~e~K~~~ek~~~~l~swks~V 537 (629)
..+.+++..||..+.-.+.=+++|+.. =+..|+-+- + ++++..+.+ +.+|.++.+.++..+ ..+
T Consensus 20 ~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG----~--vlv~~~~~e~~~~l~~r~e~ie~~i-------~~l 86 (110)
T TIGR02338 20 QAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVG----N--LLVKTDKEEAIQELKEKKETLELRV-------KTL 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhc----h--hhheecHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 334444455555555444445554432 111111111 1 344444555 466666666666555 333
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 006838 538 SFRVNELIKENSMLRIDV 555 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~V 555 (629)
..+++.+......++..+
T Consensus 87 ek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 87 QRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 172
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=58.59 E-value=1.1e+02 Score=35.22 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHhhhc
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQ------DVFPELDREITRISLLLEKSK-------LELEELVKWRETMERGL 527 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~------~~f~~l~~el~~~~~~Lek~~-------aeI~~L~e~K~~~ek~~ 527 (629)
+.+.+.+..++-+...+..=++.+++.|. .....+++++..+...+..+. .....+++.-+.+.+.+
T Consensus 313 ~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~l 392 (569)
T PRK04778 313 DTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQL 392 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 34445555555555555555666666654 223333333333333333221 11222222233333333
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 006838 528 SDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQA 563 (629)
Q Consensus 528 ~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~ 563 (629)
.+++.=...+...++.|..+-...|..++++++...
T Consensus 393 eeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 393 EEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344455555555555555555555555443
No 173
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=58.57 E-value=1.1e+02 Score=29.81 Aligned_cols=78 Identities=12% Similarity=0.240 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVN 542 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd 542 (629)
|.+.+-..|...-++.+.++.+.....+....+=.=+.....-++-++++++.|.+++...++-+ .++|..+...|+
T Consensus 13 l~~~~e~~~~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~---~~Lk~yL~~~m~ 89 (162)
T PF05565_consen 13 LLELLEEGDLDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRI---DRLKEYLLDAME 89 (162)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33333333345556666666655555555544445555555556666778888888887777666 444555554444
Q ss_pred H
Q 006838 543 E 543 (629)
Q Consensus 543 ~ 543 (629)
.
T Consensus 90 ~ 90 (162)
T PF05565_consen 90 A 90 (162)
T ss_pred H
Confidence 3
No 174
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=58.50 E-value=3.6e+02 Score=31.53 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 492 FPELDREITRISLLLEKS--KLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 492 f~~l~~el~~~~~~Lek~--~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+.+++.++..+...|... ..++..+.+..+...+++.+++.=......+++.+.++...++.++.+.++..
T Consensus 400 ~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 472 (650)
T TIGR03185 400 LRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQK 472 (650)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666553 35577777777777777766655555555566666666666666665554443
No 175
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=58.41 E-value=15 Score=39.92 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHH
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFR 540 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsq 540 (629)
--|-.+|..|+.++.=+..=|-++... +..|..++.....-|..+..+|.+|...=..++..+.+|++=-...++.
T Consensus 52 s~lss~iSdLss~L~~l~~sl~~~~s~----L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTd 127 (326)
T PF04582_consen 52 SSLSSTISDLSSDLQDLASSLADMTSE----LNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTD 127 (326)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhh
Confidence 345567777777776666555554433 3667777777777777787888888877777777888887777777888
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 541 VNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 541 Ld~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
+.+|..+...+-..|-.++.+++.+|+.
T Consensus 128 vsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 128 VSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 8888888888888888888888888876
No 176
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=58.34 E-value=12 Score=36.18 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=28.3
Q ss_pred HHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccch
Q 006838 506 LEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKEL 570 (629)
Q Consensus 506 Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~l 570 (629)
+.+++.|++.+ ..+|+++|-+ .+.+|+|++..|...+..+...-+......-++-+
T Consensus 49 i~~l~~E~~~i-S~qDeFAkwa--------Kl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~ 104 (161)
T PF04420_consen 49 ILQLKRELNAI-SAQDEFAKWA--------KLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVL 104 (161)
T ss_dssp HHHHHHHHTTS--TTTSHHHHH--------HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred HHHHHHHHHcC-CcHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443 4555555433 35777777777777666666544444433333333
No 177
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=58.32 E-value=1.1e+02 Score=29.30 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHhhhchhhhhHHHHHHHHHHHHH
Q 006838 476 VLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELE-----ELVKWRETMERGLSDLESWKTVVSFRVNELI 545 (629)
Q Consensus 476 lle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~-----~L~e~K~~~ek~~~~l~swks~VSsqLd~l~ 545 (629)
|=++|=+++-+.|.+.+..+|.++.++.-...++-++++ .+..-+.+++++..+...=+..+-.|++++.
T Consensus 13 vTe~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 13 VTEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666788888888888888888888888888766664 5555666777666666655555555555543
No 178
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=58.28 E-value=43 Score=29.05 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
...+....++|++|+..|..+...+..|-
T Consensus 34 q~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 34 QHMFEQTSQENAALSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888877777666553
No 179
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=58.18 E-value=15 Score=40.00 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 529 DLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 529 ~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
+++.|-+.++..++++......+..++..+...+.++||
T Consensus 148 e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 148 ELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444444444444444444
No 180
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=58.15 E-value=20 Score=40.33 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=56.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 489 QDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 489 ~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
.++++||++|+.-....-... ++|+.|...++.+.+.+..++ +.+++..+...++.++.+++.+...+.|+
T Consensus 321 ~~Ii~ELe~Ei~~~~~~~~~~-~~l~~L~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~fn~ 391 (448)
T PF05761_consen 321 AAIIPELEQEIEIWNSKKYRF-EELQELEELLEELQDHLDQLR--------SSSELRPDISELRKERRELRREMKELFNP 391 (448)
T ss_dssp EEE-TTHHHHHHHHHHTHHHH-HHHHHHHHHCHHHHCHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHCTT-T
T ss_pred EEEehhhhhhhhhhhhcchhh-hHHHHHHHHHHHHHHHhcccc--------cchhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 467799999887666554444 558888888888887765443 66788888888999999999999999987
Q ss_pred chhHH
Q 006838 569 ELAVL 573 (629)
Q Consensus 569 ~laVl 573 (629)
-...+
T Consensus 392 ~~Gsl 396 (448)
T PF05761_consen 392 QFGSL 396 (448)
T ss_dssp TT-BS
T ss_pred chHHH
Confidence 66544
No 181
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.01 E-value=61 Score=38.67 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=44.6
Q ss_pred CCchhHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006838 454 IPGDTVLRILMQKVKSLE--------QNLSVLEDYIKELNQRQQDV---FPELDREITRISLLLEKSKLELEELVKWRET 522 (629)
Q Consensus 454 ~~gdSVlKiLmqKvksLE--------~N~Slle~YiEeln~ry~~~---f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~ 522 (629)
.+.+-.+.+|.|-++.|- .-...+++.++-|...+... +.+++++...+..--+++...++++.+.++.
T Consensus 532 p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~ 611 (717)
T PF10168_consen 532 PSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEK 611 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788877766554 33455566655555444443 3444445555555556666667777777777
Q ss_pred Hhhhchh
Q 006838 523 MERGLSD 529 (629)
Q Consensus 523 ~ek~~~~ 529 (629)
+.+-+..
T Consensus 612 L~~R~~~ 618 (717)
T PF10168_consen 612 LMKRVDR 618 (717)
T ss_pred HHHHHHH
Confidence 7665543
No 182
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=57.92 E-value=2e+02 Score=31.45 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------h----h
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETM-------E----R 525 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~-------e----k 525 (629)
|.|...|-+|=|.||+-..+ ++-+-+.|+........++.++......+..++-+| -.|+.. + -
T Consensus 65 davt~lLeEkerDLelaA~i-GqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL----~~kdeLL~~ys~~~ee~~~ 139 (306)
T PF04849_consen 65 DAVTRLLEEKERDLELAARI-GQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHEL----SMKDELLQIYSNDDEESEP 139 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHH-hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCcHhhhccc
Confidence 68899999999999876543 444555566666666777777766666665553332 222211 0 0
Q ss_pred hchhh--------------hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhH
Q 006838 526 GLSDL--------------ESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAV 572 (629)
Q Consensus 526 ~~~~l--------------~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laV 572 (629)
+...- -.+-..+..++-.|..||..||.+..++..+-.+.|-|+=-.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL 200 (306)
T PF04849_consen 140 ESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL 200 (306)
T ss_pred ccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH
Confidence 00000 123466788999999999999999999998888888887543
No 183
>PRK04863 mukB cell division protein MukB; Provisional
Probab=57.77 E-value=1.5e+02 Score=38.48 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=12.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 465 QKVKSLEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 465 qKvksLE~N~Slle~YiEeln~ry 488 (629)
++++.-|.|+.-+.+-++++..+.
T Consensus 300 kkLe~tE~nL~rI~diL~ELe~rL 323 (1486)
T PRK04863 300 RQLAAEQYRLVEMARELAELNEAE 323 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 184
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=57.08 E-value=2.1e+02 Score=28.95 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=0.0
Q ss_pred hHHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHHHHhHHH-HHHHHH
Q 006838 458 TVLRILMQKVK--------SLEQNLSVLEDYIKELNQRQQD----------VFPELDREITRISLLLEKSKLE-LEELVK 518 (629)
Q Consensus 458 SVlKiLmqKvk--------sLE~N~Slle~YiEeln~ry~~----------~f~~l~~el~~~~~~Lek~~ae-I~~L~e 518 (629)
+||+.|-.=|+ .+|-=-.+++.||.++..-+.+ .-+.+++++......+++.... ..-|..
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_pred HHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 519 WRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 519 ~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
=++..++++ -.=|.....+++.+...-..++..|+++......|+.|
T Consensus 82 G~EdLAr~A---l~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~k 128 (219)
T TIGR02977 82 GREDLARAA---LIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAK 128 (219)
T ss_pred CCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 185
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.00 E-value=1.2e+02 Score=37.84 Aligned_cols=109 Identities=20% Similarity=0.282 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTV 536 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~ 536 (629)
+-+++.|-.||+-||..---|+.|=+-=..|-.=-+.-|++++..+...|+.+-.+-....+.-+++--.+.+-+.=-..
T Consensus 190 ~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~ 269 (1200)
T KOG0964|consen 190 NELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESED 269 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHH
Confidence 56788999999999999999999977666666666677888888888888776444332222211221111111111134
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 537 VSFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
+..++-.|......||.+-+++..+++.+
T Consensus 270 ~~~~i~ele~~l~~l~~ekeq~~a~~t~~ 298 (1200)
T KOG0964|consen 270 LKCEIKELENKLTNLREEKEQLKARETKI 298 (1200)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666554443
No 186
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=56.84 E-value=2.1e+02 Score=28.42 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhHHHH-HHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 499 ITRISLLLEKSKLEL-EELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 499 l~~~~~~Lek~~aeI-~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
-.+...+|.+-+.++ +.....+...+..+..++.=-.....+.+.|......|..++.+++.+...+..+.
T Consensus 71 ~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 71 EKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443 34444555555566555555556666777777777777777777776666655544
No 187
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=56.75 E-value=2.1e+02 Score=31.71 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 006838 532 SWKTVVSFRVNELIKENSMLRIDVEKVSSDQA 563 (629)
Q Consensus 532 swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~ 563 (629)
.|...+..+++++..+...++.+++..+..+.
T Consensus 284 ~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 284 QQLAKVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667788888888888888888877775543
No 188
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=56.41 E-value=1.7e+02 Score=33.96 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=41.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 006838 464 MQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTV 536 (629)
Q Consensus 464 mqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~ 536 (629)
+.-++.-+--.+++...+.+.-+....+.+.+...+.+....+.++-.-++.+++.-+.+.+.+.++.-|+-.
T Consensus 119 ~~Sl~~an~tv~ti~~qv~~~~~~l~~~~~~~l~~~~~n~t~~~~l~~~l~~vq~~~~~a~~~l~~~~~~~~~ 191 (526)
T KOG4433|consen 119 TYSLRHANHTVSTIDAQVSDTAEGLNNTAEQLLETLEENLTARPELLQALRRVQGNAETAVGQLSGLPFWRMV 191 (526)
T ss_pred HHhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCcccccC
Confidence 3344444444555555666555555555554444444544555555444566666666677777777777643
No 189
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.31 E-value=2.8e+02 Score=29.69 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 006838 490 DVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVE 556 (629)
Q Consensus 490 ~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve 556 (629)
..+..||.++..+......+ ..|+..+..+. .+....|+.--+++++-+..||--+.
T Consensus 180 q~I~~lE~dI~dvN~IFkdL----~~lV~eQG~~V------DsIe~nve~a~~nveqg~~~L~kA~~ 236 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDL----GSLVHEQGELV------DSIEANVENASVNVEQGTENLRKAAK 236 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHH------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666655555444333 33333332222 34446777777888888888887763
No 190
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.07 E-value=1.9e+02 Score=33.27 Aligned_cols=92 Identities=30% Similarity=0.280 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhh
Q 006838 461 RILMQKVKSLEQ-NLSVLEDYIKELNQRQQDVF-------PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLES 532 (629)
Q Consensus 461 KiLmqKvksLE~-N~Slle~YiEeln~ry~~~f-------~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~s 532 (629)
-+.|.|.++||. |+-+=.+.+++=+...+... .+++.+..+....|+-++..|...|+-+.-|..-|+-++.
T Consensus 288 l~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ 367 (502)
T KOG0982|consen 288 LIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQE 367 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888886 44455566776666665544 4566677778888888888888888877666655655554
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q 006838 533 WKTVVSFRVNELIKENSMLR 552 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR 552 (629)
=|....--+++|.++..-||
T Consensus 368 ekeatqELieelrkelehlr 387 (502)
T KOG0982|consen 368 EKEATQELIEELRKELEHLR 387 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 191
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=55.78 E-value=1.4e+02 Score=26.16 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=8.9
Q ss_pred hcccchhHHHHHHHHHHHH
Q 006838 565 LESKELAVLSVSLFFACFA 583 (629)
Q Consensus 565 mEnK~laVl~isl~f~~la 583 (629)
...|.+..+.+.+|++|.+
T Consensus 67 ~~D~~li~~~~~~f~~~v~ 85 (92)
T PF03908_consen 67 KTDRILIFFAFLFFLLVVL 85 (92)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3344455555555544433
No 192
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=55.69 E-value=2.2e+02 Score=29.81 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=47.9
Q ss_pred HHHHHHhh---hhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHH
Q 006838 465 QKVKSLEQ---NLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRV 541 (629)
Q Consensus 465 qKvksLE~---N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqL 541 (629)
..++.||- --.--|--+.-+..-+++.+..+.+++.....+ ++ -.. +++.+.+|==.++. +.--+.+
T Consensus 49 alvr~LE~~Gf~~kQAETIt~aiT~v~ndsl~~vsk~~vtkaqq-~~-----v~~-QQ~~~f~kiRsel~---S~e~sEF 118 (220)
T KOG3156|consen 49 ALVRSLEAAGFDSKQAETITSAITTVLNDSLETVSKELVTKAQQ-EK-----VSY-QQKVDFAKIRSELV---SIERSEF 118 (220)
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HH-----HHH-HHHHHHHHHHHHHH---HHHHHHH
Confidence 44555553 233344455556666666666666665443322 11 111 12222221111111 3335678
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhh
Q 006838 542 NELIKENSMLRIDVEKVSSDQAN 564 (629)
Q Consensus 542 d~l~reN~~LR~~Ve~v~~~q~~ 564 (629)
.+|+.+|..|+.++|+++...-+
T Consensus 119 ~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 119 ANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999988866543
No 193
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=55.29 E-value=1.2e+02 Score=31.57 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Q 006838 537 VSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
+..|.|++.+|-..|-.+=+++|
T Consensus 184 l~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 184 LKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 194
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=54.94 E-value=98 Score=31.85 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=16.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 527 LSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 527 ~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
+.|++.|-.....+..+..+-|..-+..++.+.+....+
T Consensus 194 L~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l 232 (264)
T PF06008_consen 194 LQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQEL 232 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333334444444444444444444444433333
No 195
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=54.91 E-value=3e+02 Score=29.62 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=14.3
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhcccch
Q 006838 543 ELIKENSMLRIDVEKVSSDQANLESKEL 570 (629)
Q Consensus 543 ~l~reN~~LR~~Ve~v~~~q~~mEnK~l 570 (629)
....+...++.+|..++.+...++.+..
T Consensus 218 ~~Eke~~e~~~~i~e~~~rl~~l~~~~~ 245 (269)
T PF05278_consen 218 QKEKEVKEIKERITEMKGRLGELEMEST 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555544
No 196
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=54.84 E-value=72 Score=28.21 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=28.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 502 ISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 502 ~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
+..+|+.+|+|...+.. ++...+.=+..+..++..-..|+..+|..|-.+...+..|
T Consensus 2 l~elLd~ir~Ef~~~~~-------e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQ-------EANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777665533 1111222223334444555555566666665555444444
No 197
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.69 E-value=1.9e+02 Score=27.25 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHHHh
Q 006838 493 PELDREITRISLLLEKS 509 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~ 509 (629)
.++++++.....-...+
T Consensus 83 ~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 83 EELERELASAEEKERQL 99 (151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 198
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=54.54 E-value=84 Score=27.84 Aligned_cols=62 Identities=16% Similarity=0.361 Sum_probs=44.8
Q ss_pred CCchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 006838 454 IPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELV 517 (629)
Q Consensus 454 ~~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~ 517 (629)
|+ ++||..+-+.|+.++.-...|..-++.+.... .-+.++.+.+......|+.+...+.+++
T Consensus 1 MS-~NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 1 MS-QNILLVIRQDIKAVDDKVDALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred Cc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 78999999999999999888888887777666 3334466666666666666655555543
No 199
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=54.05 E-value=1.3e+02 Score=25.19 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=30.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhchhhh-hHHHHHHHHHHHHHHHhhHHHHHHH
Q 006838 501 RISLLLEKSKLELEELVKWRETMERGLSDLE-SWKTVVSFRVNELIKENSMLRIDVE 556 (629)
Q Consensus 501 ~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~-swks~VSsqLd~l~reN~~LR~~Ve 556 (629)
.....|..+...|.+..+.=++|+-|+..+- +=|..+.+++.....+...|+.+++
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444455555555555555555555554443 4455566666666666666665553
No 200
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=54.03 E-value=1.6e+02 Score=39.00 Aligned_cols=106 Identities=21% Similarity=0.302 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhh
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDR----EITRISLLLEKSKLELEELVKWRETMERGLSDLES 532 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~----el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~s 532 (629)
++-++-|--++......+.+|+.|.+.--+|+.+++..+.+ ++.++..-+..++.++.+..-.=....+++.+++
T Consensus 1263 q~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q- 1341 (1822)
T KOG4674|consen 1263 QNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ- 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44555555556666666667777777777777777755443 4445555555555555544334444455555554
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 533 WKTVVSFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
-.+..|+|++..+-..+-.+|+++.....-+
T Consensus 1342 --~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL 1372 (1822)
T KOG4674|consen 1342 --EKIKKQLDELNNEKANLTKELEQLEDLKTRL 1372 (1822)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999998887665443
No 201
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=53.85 E-value=48 Score=30.67 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
..++..|..||+.||.+-+.+|+....++.
T Consensus 28 K~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 28 KKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567888999999999999999988765
No 202
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.80 E-value=2.9e+02 Score=29.12 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHhhhchhhhh----HH------HHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWR-ETMERGLSDLES----WK------TVVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K-~~~ek~~~~l~s----wk------s~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
++|...|......++..-+.+++|.+.- +.+.-.+.|+.. -| ...+..++.+....+.-|.+++++..+
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ 182 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAVALRKEERPKVPTD 182 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667776666677766644 223333333322 22 223445556666666667777777777
Q ss_pred hhhhccc
Q 006838 562 QANLESK 568 (629)
Q Consensus 562 q~~mEnK 568 (629)
++.++.+
T Consensus 183 ie~~~~~ 189 (240)
T cd07667 183 VEKCQDR 189 (240)
T ss_pred HHHHHHH
Confidence 6665544
No 203
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=53.77 E-value=91 Score=33.02 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
.+++++=..+..-|+...+++.+++++=..++++.
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444555555555554555444
No 204
>PRK11519 tyrosine kinase; Provisional
Probab=53.56 E-value=1.3e+02 Score=35.44 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQ 489 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~ 489 (629)
..-..+|-+++..|+..+...|+=+++.-++++
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788999999999988888888887776654
No 205
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.37 E-value=2.3e+02 Score=36.13 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=9.0
Q ss_pred hHHHHHHhhhhcCC
Q 006838 360 AIERMLEDLFVASE 373 (629)
Q Consensus 360 ~vE~~leD~i~~~~ 373 (629)
|+ +|+||.|-...
T Consensus 252 mL-EYLEDIIGT~r 264 (1293)
T KOG0996|consen 252 ML-EYLEDIIGTNR 264 (1293)
T ss_pred HH-HHHHHHhcccc
Confidence 55 48999887543
No 206
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.36 E-value=85 Score=32.63 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVE 556 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve 556 (629)
.++-.++.+....+++...+++..++..+.+.|.+.++ ...-|.|..|+..||++|+
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~-------~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL-------QDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccHHHHHHHHHHHHHHHHh
Confidence 34444666666666666666777777777777766443 5667888899999999885
No 207
>PRK09039 hypothetical protein; Validated
Probab=53.15 E-value=3.4e+02 Score=29.62 Aligned_cols=11 Identities=27% Similarity=0.193 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 006838 587 LVSARLSTLLR 597 (629)
Q Consensus 587 l~~~~~~~~~~ 597 (629)
-.++.+..++.
T Consensus 241 ~~L~~ia~~l~ 251 (343)
T PRK09039 241 AEIAKLAAALI 251 (343)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 208
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=53.02 E-value=1.3e+02 Score=26.98 Aligned_cols=61 Identities=15% Similarity=0.272 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQ--RQQDVFPELDREITRISLLLEKSKLELEELVKWR 520 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~--ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K 520 (629)
+.+++.|.++|..||.- +++.++-... .+-+-+..|+.+-+++...|.+..++...|.+-.
T Consensus 7 e~al~rL~~aid~LE~~---v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~ 69 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKA---VDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEAN 69 (89)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 67888899999888864 4444444433 3334446666666666666666666555554433
No 209
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=52.87 E-value=3.1e+02 Score=29.07 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 006838 464 MQKVKSLEQNLSVLEDYIKELN 485 (629)
Q Consensus 464 mqKvksLE~N~Slle~YiEeln 485 (629)
.+++..|+.....+..-++.+.
T Consensus 143 ~~~~~~l~~~i~~~~~~i~~~~ 164 (423)
T TIGR01843 143 RAQLELILAQIKQLEAELAGLQ 164 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 210
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.76 E-value=1.7e+02 Score=36.77 Aligned_cols=55 Identities=24% Similarity=0.207 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 512 ELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 512 eI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
+|..+.--.+.+..+.++.+.=+..+...++.+.+|-..+|-+|+.+..+-.|+.
T Consensus 886 ~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 886 EISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 3444444444555555555555555666667777777777777777776666655
No 211
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=52.63 E-value=1.9e+02 Score=30.59 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=13.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006838 488 QQDVFPELDREITRISLLLEKSKLELEELVKW 519 (629)
Q Consensus 488 y~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~ 519 (629)
|.+.+..++.++......++.+++.+..+.+.
T Consensus 142 ~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~ 173 (423)
T TIGR01843 142 LRAQLELILAQIKQLEAELAGLQAQLQALRQQ 173 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=52.09 E-value=3.8e+02 Score=31.02 Aligned_cols=85 Identities=19% Similarity=0.152 Sum_probs=43.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHH
Q 006838 468 KSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKE 547 (629)
Q Consensus 468 ksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~re 547 (629)
.+||++.-.-|+|+.++++ +.+......+..+..-...++.+..++...|..+++-+-.++.=-..++.++.++.-+
T Consensus 328 sqleSqr~y~e~~~~e~~q---sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~ 404 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQ---SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREE 404 (493)
T ss_pred hhhhHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666665 3333333344444444444445555555555555555544433334444455555544
Q ss_pred hhHHHHHH
Q 006838 548 NSMLRIDV 555 (629)
Q Consensus 548 N~~LR~~V 555 (629)
|.+|+...
T Consensus 405 n~~l~knq 412 (493)
T KOG0804|consen 405 NKKLIKNQ 412 (493)
T ss_pred HHHHHhhH
Confidence 55544443
No 213
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=52.02 E-value=2.3e+02 Score=27.39 Aligned_cols=61 Identities=16% Similarity=0.360 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQD---VFPELDREITRISLLLEKSKLELEELV 517 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~---~f~~l~~el~~~~~~Lek~~aeI~~L~ 517 (629)
+..+.-+-+++..++.-...+...++.+..-+.. .+++++.++...+.....+..+++++.
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777776666666666655444433 345666666666666667767777766
No 214
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=51.96 E-value=1.9e+02 Score=27.58 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
.-+++-|.|--..++.++++++.+...|
T Consensus 83 e~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 83 ELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554444
No 215
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=51.96 E-value=2.3e+02 Score=28.20 Aligned_cols=80 Identities=18% Similarity=0.117 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc-hhhhhHHHHHHHHHHHHHHHhhHHHH
Q 006838 475 SVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGL-SDLESWKTVVSFRVNELIKENSMLRI 553 (629)
Q Consensus 475 Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~-~~l~swks~VSsqLd~l~reN~~LR~ 553 (629)
.+.=|.-.-+.+..+-...-|+.....-..+-.-+-++++.|.+.++.=-|++ ..| ....+.|.++++|-.+||.
T Consensus 70 ALgVR~A~RQ~q~q~~rV~~Lqd~~~~hksa~~aLas~L~~Lr~q~e~e~keaa~qL----~~~~a~L~~v~~ERD~Lr~ 145 (152)
T PF15186_consen 70 ALGVRFAARQRQLQARRVQWLQDQAEEHKSAAWALASELKRLREQREMERKEAAFQL----QLTQAALQEVQKERDLLRW 145 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34445556666667777788888877777777778889999999887222222 111 4557789999999999999
Q ss_pred HHHHH
Q 006838 554 DVEKV 558 (629)
Q Consensus 554 ~Ve~v 558 (629)
++-+.
T Consensus 146 kLlqa 150 (152)
T PF15186_consen 146 KLLQA 150 (152)
T ss_pred HHHhh
Confidence 98654
No 216
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=51.85 E-value=93 Score=36.84 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELN 485 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln 485 (629)
...+-+-.+++.||-.-+-|++++++|-
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k 449 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELK 449 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555667777777777777776654
No 217
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=51.71 E-value=2.8e+02 Score=30.57 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=21.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 489 QDVFPELDREITRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 489 ~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
....++.+++..+....+++.+.++.+..+...+.++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (471)
T PF04791_consen 223 RRILRDVEELRSELDTILNELPKEIQELIESSNQEERST 261 (471)
T ss_pred HhhhcccHHHHHHHHHHHHhhHHHHHHHHhccccccccc
Confidence 455566666666666666666666665544333333333
No 218
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=51.38 E-value=1.1e+02 Score=28.95 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 534 KTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 534 ks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
+..+-.++|+|+.....|-+.+..|.++++.|+-
T Consensus 35 Ra~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKp 68 (112)
T PF07439_consen 35 RASMHRRLDELVERVTTLESSVSTLKADVSEMKP 68 (112)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 4566789999999999999999999999988864
No 219
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.04 E-value=98 Score=34.90 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhhhh
Q 006838 459 VLRILMQKVKSLEQNLS 475 (629)
Q Consensus 459 VlKiLmqKvksLE~N~S 475 (629)
-.+-|-++|+.||..+.
T Consensus 72 ~~~~l~~~l~~l~~~~~ 88 (525)
T TIGR02231 72 RLAELRKQIRELEAELR 88 (525)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555544433
No 220
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.96 E-value=1.3e+02 Score=31.27 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=30.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHH
Q 006838 540 RVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIF 585 (629)
Q Consensus 540 qLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f~~la~~ 585 (629)
+-++|+.-....|....++++.. |++|=.+.++++++++.++.++
T Consensus 161 KTenl~~~s~~fr~q~r~~~r~m-w~~n~kl~~iv~~~~~~~iyii 205 (217)
T KOG0859|consen 161 KTENLRSKSFDFRTQGRKLRRKM-WFQNMKLKLIVLGVSISLIYII 205 (217)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHH-HHhccceehhhhhHHHHHHHHH
Confidence 33566666777777777777654 8888888777776665555443
No 221
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=50.89 E-value=1e+02 Score=32.81 Aligned_cols=98 Identities=24% Similarity=0.248 Sum_probs=48.7
Q ss_pred CchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 455 PGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQD---VFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 455 ~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~---~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
++.|++-.|.+-+.. +..-+....++|+.-..+ -+.++..++.++..-+++++.++....+ +..+-.
T Consensus 239 ~~~tLL~~l~~~~~~---~~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~-------~~~~~~ 308 (370)
T PF02181_consen 239 NKTTLLHYLVKIVEE---KFPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEK-------DEEDDD 308 (370)
T ss_dssp TTSBHHHHHHHHHHT---TSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCT-------TSSTT-
T ss_pred CCchHHHHHHHHHHh---cChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc-------cccchh
Confidence 456888888766655 222233333555443321 2344444555555444444444433322 222233
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 532 SWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 532 swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
.+...+..-++....+...|+...+++.+..
T Consensus 309 ~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~ 339 (370)
T PF02181_consen 309 KFKEKMKEFLEEAETKLDELQELYEELEEAF 339 (370)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555556666666666666665555444
No 222
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=50.83 E-value=1.1e+02 Score=35.58 Aligned_cols=17 Identities=6% Similarity=-0.332 Sum_probs=7.6
Q ss_pred CccchhhhhhhhHHHHh
Q 006838 608 NRGWVLILLSSSMTIFV 624 (629)
Q Consensus 608 ~~~w~~ll~ss~~~~fi 624 (629)
..+-+..=++-+|.=||
T Consensus 448 ~~~~~~sg~~~~I~~~i 464 (622)
T COG5185 448 QLFPKGSGINESIKKSI 464 (622)
T ss_pred cCCccccCchHhHHHHH
Confidence 34444444444444444
No 223
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=50.51 E-value=2e+02 Score=33.91 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPEL 495 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l 495 (629)
+.-+.-|-+.|..|+.....++.+++.+...+..+..++
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~ 365 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEEL 365 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777777776666665544333
No 224
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=50.49 E-value=1.9e+02 Score=32.11 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTV 536 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~ 536 (629)
|...|+...-++.-| --+++.-..|.+.|.+++.-|++.+.+..+-|.++..+-..=..++||. .+|++.
T Consensus 203 d~lak~~~e~~~~~e-------~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~---l~wr~K 272 (391)
T KOG1850|consen 203 DELAKIMLEEMKQVE-------GQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKET---LIWRTK 272 (391)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 445555554444443 3445555699999999999999999999999999998887767888876 689887
Q ss_pred HH
Q 006838 537 VS 538 (629)
Q Consensus 537 VS 538 (629)
..
T Consensus 273 ~e 274 (391)
T KOG1850|consen 273 WE 274 (391)
T ss_pred Hh
Confidence 64
No 225
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.43 E-value=1.5e+02 Score=33.10 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=45.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHH
Q 006838 472 QNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSML 551 (629)
Q Consensus 472 ~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~L 551 (629)
.-.|+..-|.|.+-.|-.+.+..++.+++.+...=|.++...++|. .-+.+++.|+..|+..-..|
T Consensus 207 irasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~--------------~~~etLEqq~~~L~~niDIL 272 (365)
T KOG2391|consen 207 IRASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLV--------------AMKETLEQQLQSLQKNIDIL 272 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHH--------------HHHHHHHHHHHHHHhhhHHH
Confidence 4567778888888777665555555544444333333333333333 33345556667777777777
Q ss_pred HHHHHHHHhhhhhhcc
Q 006838 552 RIDVEKVSSDQANLES 567 (629)
Q Consensus 552 R~~Ve~v~~~q~~mEn 567 (629)
..-+++ .|..+||
T Consensus 273 ~~k~~e---al~~~~n 285 (365)
T KOG2391|consen 273 KSKVRE---ALEKAEN 285 (365)
T ss_pred HHHHHH---HHhhhcc
Confidence 777766 3444555
No 226
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=50.20 E-value=2.3e+02 Score=26.76 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhchhhhhHHHHHHHHHHH
Q 006838 514 EELVKWRETMERGLSDLESWKTVVSFRVNE 543 (629)
Q Consensus 514 ~~L~e~K~~~ek~~~~l~swks~VSsqLd~ 543 (629)
..+.+.=..--||+||++-|-..+...|..
T Consensus 74 ~~~~~~~~~~LKEiGDveNWa~~iE~Dl~~ 103 (121)
T PF06320_consen 74 LKLVDSFNDALKEIGDVENWAEMIERDLRV 103 (121)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 333333344456788888888777644433
No 227
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=50.13 E-value=2.3e+02 Score=27.78 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=69.8
Q ss_pred CCCchhHHHHHHH--HHHHHhhhhhHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHH
Q 006838 453 RIPGDTVLRILMQ--KVKSLEQNLSVLEDY----IKELNQRQQDVFPELDREITRISLLLE----KSKLELEELVKWRET 522 (629)
Q Consensus 453 r~~gdSVlKiLmq--KvksLE~N~Slle~Y----iEeln~ry~~~f~~l~~el~~~~~~Le----k~~aeI~~L~e~K~~ 522 (629)
-.|..+++.+|-- |+-.|=+.+++|.-- |-.+| ..+++|+....+-+. ++++||+.|-.+-+.
T Consensus 19 ~pppq~~lqrlcs~~~l~LlsLgl~~LLLV~IcVigsQ~-------~qlq~dl~tLretfsNFssst~aEvqaL~S~G~s 91 (138)
T PF03954_consen 19 PPPPQSLLQRLCSGPRLLLLSLGLSLLLLVVICVIGSQN-------SQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGS 91 (138)
T ss_pred CCCChHHHHHHcccchHHHHHHHHHHHHHHHHHhhcCcc-------HHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccc
Confidence 3455788888854 455566666666543 33344 445555555555444 578888888765555
Q ss_pred HhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 006838 523 MERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQAN 564 (629)
Q Consensus 523 ~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~ 564 (629)
+... +.+|++.++.+-.++.-|...|-..|.++..+..+
T Consensus 92 l~~k---VtSLea~lEkqqQeLkAdhS~lllhvk~~~~DLr~ 130 (138)
T PF03954_consen 92 LQDK---VTSLEAKLEKQQQELKADHSTLLLHVKQFPKDLRS 130 (138)
T ss_pred HHhH---cccHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 4433 47889999999999999999999999998876644
No 228
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.97 E-value=2.9e+02 Score=27.93 Aligned_cols=12 Identities=8% Similarity=0.041 Sum_probs=4.5
Q ss_pred HHhhHHHHHHHH
Q 006838 546 KENSMLRIDVEK 557 (629)
Q Consensus 546 reN~~LR~~Ve~ 557 (629)
.+....+.++..
T Consensus 126 ~~~~~~~~~l~~ 137 (302)
T PF10186_consen 126 NELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 229
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=49.89 E-value=3e+02 Score=33.30 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=27.1
Q ss_pred HhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 523 MERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 523 ~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
+++.+.++++=......+|+++++....++.+++..+.+
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666667777888888877777777776655
No 230
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=49.81 E-value=1.7e+02 Score=35.34 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKEL---NQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEel---n~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
.+++||..||..+..+..-+.-. +.|......++.++.......-..+|++|+++..+.-.+-.|.+||+
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselE 103 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELE 103 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 58899999998888766554432 45677777888888888888888888888888776666655555543
No 231
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.53 E-value=2.9e+02 Score=29.04 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=27.4
Q ss_pred hHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHhH
Q 006838 475 SVLEDY-IKELNQRQQDVFPELDREITRISLLLEKSK 510 (629)
Q Consensus 475 Slle~Y-iEeln~ry~~~f~~l~~el~~~~~~Lek~~ 510 (629)
.+.+.+ ++++.+.+..++++=|..|..+..-+..+|
T Consensus 129 ~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk 165 (235)
T KOG3202|consen 129 RASGLDNVQEIVQLQQQMLQEQDEGLDGLSATVQRLK 165 (235)
T ss_pred HhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455 899999999999888888888777776653
No 232
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.49 E-value=39 Score=28.31 Aligned_cols=29 Identities=24% Similarity=0.325 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQA 563 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q~ 563 (629)
..+++.++.++++|..||..|+++.+.+.
T Consensus 10 ~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999987773
No 233
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=48.71 E-value=89 Score=27.75 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006838 478 EDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEK 557 (629)
Q Consensus 478 e~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~ 557 (629)
+.|.+.+..|. .....=.++-.++.....+..++.+|+..|..+.|+++....= ....+.+..+...++.++..
T Consensus 12 e~v~~~l~~R~--~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~----~~~~~~l~~e~~~lk~~i~~ 85 (108)
T PF02403_consen 12 EEVRENLKKRG--GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA----GEDAEELKAEVKELKEEIKE 85 (108)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT----TCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHH
Confidence 44555555554 2233333555556666666677777777777777666554211 13455666666666666666
Q ss_pred HHhhhhhhccc
Q 006838 558 VSSDQANLESK 568 (629)
Q Consensus 558 v~~~q~~mEnK 568 (629)
+...+..++.+
T Consensus 86 le~~~~~~e~~ 96 (108)
T PF02403_consen 86 LEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555544
No 234
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=48.68 E-value=3e+02 Score=27.81 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHhhh
Q 006838 457 DTVLRILMQKVKSLEQN 473 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N 473 (629)
-++|-.+|+-+..||.+
T Consensus 68 ~~~f~~~~~tl~~LE~~ 84 (190)
T PF05266_consen 68 RSSFESLMKTLSELEEH 84 (190)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 46677777777777765
No 235
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=48.66 E-value=1.9e+02 Score=37.01 Aligned_cols=88 Identities=15% Similarity=0.162 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHH
Q 006838 498 EITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSL 577 (629)
Q Consensus 498 el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl 577 (629)
++.++...++.+|..|.++.++=-++|..|+|+.+=-......|+.|+|+-..|-.-+.++++...-+++ |=
T Consensus 1226 ~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~--------sd 1297 (1758)
T KOG0994|consen 1226 DIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKE--------SD 1297 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cC
Confidence 4555555556666667777777677777777665444444577888888888877777777765543333 34
Q ss_pred HHHHHHHHHHHHHHHH
Q 006838 578 FFACFAIFKLVSARLS 593 (629)
Q Consensus 578 ~f~~la~~~l~~~~~~ 593 (629)
|.|.|-+.|-+--+.+
T Consensus 1298 i~GA~~~~r~a~~~s~ 1313 (1758)
T KOG0994|consen 1298 ILGAFNSTRHAYEQSA 1313 (1758)
T ss_pred chhHHHHHHHHHHHHH
Confidence 5555555554444444
No 236
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=48.46 E-value=2.9e+02 Score=32.37 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPEL 495 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l 495 (629)
++-+..|-.+-..||-+.-.|.+-|.+|+-|..+.=..|
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rl 374 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRL 374 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456666667777788777777777777777654443333
No 237
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.40 E-value=2.1e+02 Score=34.06 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=15.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 006838 485 NQRQQDVFPELDREITRISLLLEKSKLELE 514 (629)
Q Consensus 485 n~ry~~~f~~l~~el~~~~~~Lek~~aeI~ 514 (629)
|+.+...+.+|++++.++...|+.++.+++
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555544443
No 238
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=48.38 E-value=96 Score=27.06 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 492 FPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 492 f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
+++.+..++++..-=.++|-.|.-|.++-.+.. ....+++.++|.-|+.+++.++.+....+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~-------------~~~~~~~~keNieLKve~~~L~~el~~~~ 63 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLG-------------PESIEELLKENIELKVEVESLKRELQEKK 63 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc-------------cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777778888888866654322 22346778888888888888887765543
No 239
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=48.34 E-value=87 Score=36.67 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=28.2
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhc-----------ccchhHHHHHHHHHHHHHH
Q 006838 542 NELIKENSMLRIDVEKVSSDQANLE-----------SKELAVLSVSLFFACFAIF 585 (629)
Q Consensus 542 d~l~reN~~LR~~Ve~v~~~q~~mE-----------nK~laVl~isl~f~~la~~ 585 (629)
|.|.+||++||.+++.+..+-..++ .|.++.+.+.+.|++++..
T Consensus 319 e~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk~Rkvvaimv~maFi~f~~~ 373 (655)
T KOG4343|consen 319 EQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKKKRKVVAIMVVMAFIIFNYG 373 (655)
T ss_pred HHHHhhhHHHHHHHHHHhhcCcccccCCCcccccccchhhhhHHHHHHHHHHhcc
Confidence 6677888888888888775433332 1444556666666666655
No 240
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=48.13 E-value=2.1e+02 Score=31.81 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=11.5
Q ss_pred HHHHHHhhhhhHHHHH--HHHHHHHH
Q 006838 465 QKVKSLEQNLSVLEDY--IKELNQRQ 488 (629)
Q Consensus 465 qKvksLE~N~Slle~Y--iEeln~ry 488 (629)
+.++.|..+...+..| +|.+..+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 32 (367)
T PRK00578 7 ERLKDLDEKLENIRGVLDVDALKERL 32 (367)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4455555554444444 34444444
No 241
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=47.90 E-value=2.2e+02 Score=25.97 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=26.0
Q ss_pred hHHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 006838 532 SWKTVV---SFRVNELIKENSMLRIDVEKVSSDQAN 564 (629)
Q Consensus 532 swks~V---SsqLd~l~reN~~LR~~Ve~v~~~q~~ 564 (629)
.|...| ..+++.+.+||..||..++..+++-..
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355544 788999999999999999988876544
No 242
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=47.76 E-value=2e+02 Score=28.17 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 006838 535 TVVSFRVNELIKENSMLRIDVE 556 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve 556 (629)
..+..|+|.|.+||+.|+.++-
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555553
No 243
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.72 E-value=2.6e+02 Score=30.27 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHHHH
Q 006838 533 WKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFAC 581 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f~~ 581 (629)
....|+.-.+.+.+-+..|+..+.=-+ .....|+++++.+++++++
T Consensus 239 IE~nV~~A~~~V~~g~~~~~kAv~~qk---kaRK~k~i~ii~~iii~~v 284 (297)
T KOG0810|consen 239 IENNVENAVDYVEQGVDHLKKAVKYQK---KARKWKIIIIIILIIIIVV 284 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhceeeeehHHHHHHHH
Confidence 345566666666666666665542222 2344455554444444333
No 244
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.68 E-value=3.2e+02 Score=32.84 Aligned_cols=111 Identities=15% Similarity=0.134 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHH--HH-HHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDR--EI-TRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVS 538 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~--el-~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VS 538 (629)
.+-+|.+.||....-|.+=++.-..+....=.+++. .. .+-..-.|-+-..|.-|+|-..++|+-|+.=--.|..+=
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467888888877777766665554444332222210 00 001112333445566777777777777766666666666
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhH
Q 006838 539 FRVNELIKENSMLRIDVEKVSSDQANLESKELAV 572 (629)
Q Consensus 539 sqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laV 572 (629)
+-|-+..|+...+-..+-+=..++.+|..|..=|
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777666666666777777765443
No 245
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=47.51 E-value=81 Score=29.93 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
|+=|.+|++.=+-.......++++++.+. .+|++.-..+..-|+.++..-.+|
T Consensus 32 F~dL~~R~~~Q~~~~~~~~~~l~~i~~~l----~~L~~~~~~~~~rl~~~r~r~~~L 84 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQHRERLKEINDKL----EELQKHDLETSARLEEARRRHQEL 84 (141)
T ss_dssp --------------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888776 455555666666677766665555
No 246
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=47.46 E-value=2.8e+02 Score=31.77 Aligned_cols=50 Identities=18% Similarity=0.069 Sum_probs=27.3
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 006838 542 NELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLS 593 (629)
Q Consensus 542 d~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f~~la~~~l~~~~~~ 593 (629)
+....+...+|.++++.+-.+.++|.|..+++--.-- .=|--.++++-+.
T Consensus 389 ~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ea--aKasEa~Ala~ik 438 (522)
T PF05701_consen 389 EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEA--AKASEALALAEIK 438 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3344455556666666666777777777766543222 2233344454444
No 247
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=46.93 E-value=1.4e+02 Score=29.29 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHH
Q 006838 457 DTVLRILMQKVKS 469 (629)
Q Consensus 457 dSVlKiLmqKvks 469 (629)
+||=..|.+|.+.
T Consensus 121 ~svk~~l~~R~~~ 133 (236)
T PF09325_consen 121 ESVKEALNRRDKK 133 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 248
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=46.67 E-value=1.1e+02 Score=35.62 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=26.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 006838 527 LSDLESWKTVVSFRVNELIKENSMLRIDVEKVSS 560 (629)
Q Consensus 527 ~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~ 560 (629)
+.-++.|...+..++..|.++|.-||.+++.++.
T Consensus 157 ~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 157 INTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3345667777788888888888888888888875
No 249
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=46.50 E-value=4e+02 Score=31.34 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFP 493 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~ 493 (629)
.-|..++..|+..+....+=.+.|.+.+.+...
T Consensus 167 ~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~ 199 (546)
T PF07888_consen 167 EQLREEVERLEAELEQEEEEMEQLKQQQKELTE 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666655554443
No 250
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.37 E-value=2.3e+02 Score=34.02 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 539 FRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 539 sqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
.+..+|..|...||.++..-.+.+..||.
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777776555555555544
No 251
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.27 E-value=1e+02 Score=35.65 Aligned_cols=53 Identities=23% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
||-|.+|+|.=+.+.-.--.||..+..+. .+|++.-.-....|++.|....+|
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v----~eLqk~~ad~~~KI~~~k~r~~~L 388 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERV----TELQKHHADAVAKIEEAKNRHVEL 388 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHH
Confidence 67777777766655555444444444333 334443333334444444444444
No 252
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=46.27 E-value=1.5e+02 Score=34.08 Aligned_cols=102 Identities=15% Similarity=0.245 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHhhhch
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQ------DVFPELDREITRISLLLEKSKLEL-------EELVKWRETMERGLS 528 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~------~~f~~l~~el~~~~~~Lek~~aeI-------~~L~e~K~~~ek~~~ 528 (629)
.+.+.|..+.-+...+..=++.+++.|. +..+.+++++..+...++.+...+ ..+.+.-+.+.+.+.
T Consensus 310 ~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~ 389 (560)
T PF06160_consen 310 ELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLE 389 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444442 222334444444444443332222 223344445556666
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 006838 529 DLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQA 563 (629)
Q Consensus 529 ~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~ 563 (629)
.++.+...+...|+.|..|-..-|..+.+++.+..
T Consensus 390 ~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~ 424 (560)
T PF06160_consen 390 EIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLR 424 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777766665543
No 253
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=46.00 E-value=3.1e+02 Score=35.13 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIK 482 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiE 482 (629)
.-+..|.++++.|+.=...-.+|.+
T Consensus 237 ~~le~l~~~~~~l~~i~~~y~~y~~ 261 (1353)
T TIGR02680 237 DELERLEALERALRNFLQRYRRYAR 261 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665565666655
No 254
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=45.98 E-value=1.7e+02 Score=25.15 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQAN 564 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~ 564 (629)
..|+.+++...-.++....+++.|..-+ ..+.++|..+-.++..|+.+++.++++..+
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ER--------------d~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRRER--------------DSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544455554433 444566677777888888888887766444
No 255
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=45.85 E-value=2.8e+02 Score=26.65 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=7.2
Q ss_pred HHHHHHhhHHHHHHHHHHh
Q 006838 542 NELIKENSMLRIDVEKVSS 560 (629)
Q Consensus 542 d~l~reN~~LR~~Ve~v~~ 560 (629)
+++.|-...|-.+-.....
T Consensus 111 e~~eRkv~~le~~~~~~E~ 129 (143)
T PF12718_consen 111 EHFERKVKALEQERDQWEE 129 (143)
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 3333333333333333333
No 256
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=45.84 E-value=2.8e+02 Score=37.19 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=52.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 483 ELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 483 eln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+-.....++-..++.++..+...|++-+....++...+...+-++.++++|......+.+++.+.....++++.++..+.
T Consensus 1006 ek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~ 1085 (1930)
T KOG0161|consen 1006 EKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKL 1085 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555556666666666666666655555665556666666777777777777777777777777777776666554
Q ss_pred h
Q 006838 563 A 563 (629)
Q Consensus 563 ~ 563 (629)
.
T Consensus 1086 e 1086 (1930)
T KOG0161|consen 1086 E 1086 (1930)
T ss_pred h
Confidence 3
No 257
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=44.89 E-value=1.6e+02 Score=31.15 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHhHHHHHHHHHH
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLL-LEKSKLELEELVKW 519 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~-Lek~~aeI~~L~e~ 519 (629)
|+|.+.++.+......-.+...++-.+|.+++.++.......... ++.+|.++-.+.+.
T Consensus 1 ~~L~~a~~~t~~~i~~eL~~~~~l~~~yta~l~~~~~~~~~~~~~~~~~lke~L~n~RQ~ 60 (281)
T PF12018_consen 1 KILQEAIPATTEHIDTELEEAQELCYRYTAVLEKQSQSPQMESELPPELLKEELYNRRQY 60 (281)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 567777777777777788888899999999998887533333333 34455555555443
No 258
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=44.65 E-value=4.2e+02 Score=32.98 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=53.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH----HHHH-------HhhhchhhhhHHHHHHHHHHHHHHHhhHHH
Q 006838 484 LNQRQQDVFPELDREITRISLLLEKSKLELEELVK----WRET-------MERGLSDLESWKTVVSFRVNELIKENSMLR 552 (629)
Q Consensus 484 ln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e----~K~~-------~ek~~~~l~swks~VSsqLd~l~reN~~LR 552 (629)
.-+...++..-++.++.+...-||+++++++.+.+ .++. .-.--+.+-+....+..++.+..++|.+|-
T Consensus 121 ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le 200 (1265)
T KOG0976|consen 121 EKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALE 200 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888888888877766644 1111 111122355666778888888999998888
Q ss_pred HHHHHHHhh
Q 006838 553 IDVEKVSSD 561 (629)
Q Consensus 553 ~~Ve~v~~~ 561 (629)
.-++++.++
T Consensus 201 ~k~~k~~e~ 209 (1265)
T KOG0976|consen 201 EKLEKFKED 209 (1265)
T ss_pred HHHHHHHHH
Confidence 887777654
No 259
>PF07964 Red1: Rec10 / Red1; InterPro: IPR012491 Rec10 / Red1 is involved in meiotic recombination and chromosome segregation during homologous chromosome formation. This protein localises to the synaptonemal complex in Saccharomyces cerevisiae and the analogous structures (linear elements) in Schizosaccharomyces pombe []. This family is currently only found in fungi. ; GO: 0007059 chromosome segregation, 0007131 reciprocal meiotic recombination
Probab=44.52 E-value=93 Score=37.33 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLE-DYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKW 519 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle-~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~ 519 (629)
.||-.+=++=++-++.=-.-|. +-|.||+++|...|.+||+.|..=..-.-+..-||++|+.-
T Consensus 629 ~SI~~FSneL~~KI~IIN~ELNnKI~kELSeKYQ~LF~eLQ~sFqnDteeM~~FvgEiKdml~L 692 (706)
T PF07964_consen 629 SSISNFSNELIRKISIINEELNNKIMKELSEKYQRLFKELQKSFQNDTEEMLKFVGEIKDMLNL 692 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 3555555555666665444444 88999999999999999987765433333333667766543
No 260
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=44.34 E-value=88 Score=31.16 Aligned_cols=15 Identities=20% Similarity=0.607 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHh
Q 006838 457 DTVLRILMQKVKSLE 471 (629)
Q Consensus 457 dSVlKiLmqKvksLE 471 (629)
.+++--+|.|+--.|
T Consensus 43 ne~id~imer~~~ie 57 (157)
T COG3352 43 NEVIDAIMERMTDIE 57 (157)
T ss_pred hHHHHHHHHHHHHHH
Confidence 466666666654444
No 261
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.06 E-value=1.2e+02 Score=32.48 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=51.5
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhh
Q 006838 451 IGRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDL 530 (629)
Q Consensus 451 ~~r~~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l 530 (629)
+-|.|||.+.+| .|++|--.++...+..=|+.+-..+..|-+++++ +|-+
T Consensus 216 ~D~~~~dh~V~i----------------~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad----~e~~---------- 265 (305)
T KOG3990|consen 216 GDRDPGDHMVKI----------------QKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD----KEYQ---------- 265 (305)
T ss_pred CCCCCcchHHHH----------------HHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc----hhHH----------
Confidence 458899998765 4556666666667777778888888888888877 1222
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006838 531 ESWKTVVSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 531 ~swks~VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
..|+..--...++|++++..+=-.+++|+
T Consensus 266 ~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 266 KELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22334444455677777666655666655
No 262
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.03 E-value=2.9e+02 Score=32.67 Aligned_cols=108 Identities=18% Similarity=0.261 Sum_probs=69.3
Q ss_pred CCCCchhHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHhh
Q 006838 452 GRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELN---QRQQDVFPELDREITRISLLLEKSKLELEELV---KWRETMER 525 (629)
Q Consensus 452 ~r~~gdSVlKiLmqKvksLE~N~Slle~YiEeln---~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~---e~K~~~ek 525 (629)
.|.-+++=.+.|-+|.+.|..-.--...|+..+- +++-..+..+..++.++...++.++.+..+|. +-|+-..+
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~ 332 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGE 332 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 4455566677788888888888888888887774 45666777778888888888888877665553 33322222
Q ss_pred hchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 526 GLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 526 ~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
|+.. .-...++|.|+...+-.+.+.+++++-+++
T Consensus 333 dve~-------mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~ 366 (581)
T KOG0995|consen 333 DVER-------MNLERNKLKRELNKIQSELDRLSKEVWELK 366 (581)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3322 223455666666666666666665554433
No 263
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.59 E-value=4e+02 Score=30.07 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006838 570 LAVLSVSLFFACFAIFKLVSARLSTLLR 597 (629)
Q Consensus 570 laVl~isl~f~~la~~~l~~~~~~~~~~ 597 (629)
.-+++..|+=.+|+++.+++=.+.+++.
T Consensus 336 ~r~~l~k~inllL~l~~vlLv~vSt~~~ 363 (395)
T PF10267_consen 336 ARALLGKLINLLLTLLTVLLVFVSTVAN 363 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466666666666666666666655544
No 264
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=43.53 E-value=4e+02 Score=33.74 Aligned_cols=9 Identities=22% Similarity=0.715 Sum_probs=5.0
Q ss_pred cccccccCC
Q 006838 252 KYLRNPCSV 260 (629)
Q Consensus 252 ~YMLnPCsa 260 (629)
.|...-|+.
T Consensus 101 ~lIK~G~~~ 109 (1074)
T KOG0250|consen 101 DLIKDGCSS 109 (1074)
T ss_pred HHHhCCCcc
Confidence 455555654
No 265
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.44 E-value=4.2e+02 Score=33.48 Aligned_cols=102 Identities=15% Similarity=0.256 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHhhhchh-hhhHHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVK-WRETMERGLSD-LESWKTVVSFR 540 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e-~K~~~ek~~~~-l~swks~VSsq 540 (629)
+-+.+..|+.-+..|..=..++.+.|.....+++.++.+....+++-..++++-.. .++..++.... ...|+.....+
T Consensus 357 ~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~ 436 (1201)
T PF12128_consen 357 WRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQ 436 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666655433333332222222111 12222222222 34577666677
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhh
Q 006838 541 VNELIKENSMLRIDVEKVSSDQAN 564 (629)
Q Consensus 541 Ld~l~reN~~LR~~Ve~v~~~q~~ 564 (629)
++++..+...+..++.++...+.+
T Consensus 437 ~~~~~~~~~~~~~~l~~l~~~~~~ 460 (1201)
T PF12128_consen 437 LEELQEQREQLKSELAELKQQLKN 460 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 777777777777666666554443
No 266
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.39 E-value=3.4e+02 Score=27.80 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=8.2
Q ss_pred HHHHHHhhhhhhcccchh
Q 006838 554 DVEKVSSDQANLESKELA 571 (629)
Q Consensus 554 ~Ve~v~~~q~~mEnK~la 571 (629)
|.+++++-.+.|.+..+.
T Consensus 129 R~~Rl~~L~~~l~~~dv~ 146 (251)
T PF11932_consen 129 RQERLARLRAMLDDADVS 146 (251)
T ss_pred HHHHHHHHHHhhhccCCC
Confidence 333443333555555553
No 267
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=43.16 E-value=58 Score=33.37 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006838 509 SKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 509 ~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
+|.++..|++.|+.--.++ ++=+...+.-|..+..|...++..|+.+.
T Consensus 133 vk~e~EqLL~YK~~ql~~~---~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le 180 (195)
T PF12761_consen 133 VKREFEQLLDYKERQLREL---EEGRSKSGKNLKSVREDLDTIEEQVDGLE 180 (195)
T ss_pred HHHHHHHHHHHHHHHHHhh---hccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4556666666664333222 22223334455666666666666666655
No 268
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=43.00 E-value=3e+02 Score=26.05 Aligned_cols=105 Identities=24% Similarity=0.291 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----------------HHhhhhhHHHHHHHHHHH---HHHHhHHHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQ-----------------RQQDVFPELDREITRISL---LLEKSKLELEEL 516 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~-----------------ry~~~f~~l~~el~~~~~---~Lek~~aeI~~L 516 (629)
|+.|..+.++++.+|....-+.+-++.... ..+..|.++-.++..-.. .|.....-...+
T Consensus 25 D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i 104 (229)
T PF03114_consen 25 DEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSLGNALEKFGEAMQEI 104 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 517 VKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 517 ~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
.+.+..+. ......|-.-|..+..+...+...+.+......+++.
T Consensus 105 ~~~~~~~~------~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~ 149 (229)
T PF03114_consen 105 EEARKELE------SQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDS 149 (229)
T ss_dssp HHHHHHHH------HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 269
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=42.58 E-value=4.9e+02 Score=30.72 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDR 497 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~ 497 (629)
.++.-.....-.+|.+..-|..=++++..+|-++.+...-
T Consensus 99 ~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~ 138 (546)
T KOG0977|consen 99 KLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRG 138 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 4445555677789999999999999999999888655443
No 270
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=42.20 E-value=5.1e+02 Score=28.51 Aligned_cols=109 Identities=16% Similarity=0.286 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhhhhHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 006838 461 RILMQKVKSLEQNLSVLED---YIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVV 537 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~---YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~V 537 (629)
.+|.|++.--|+-...|+- |+.+-=+--.=++.-++++++++--.+-.|..+..+- ++.+.|-++.. -.|
T Consensus 147 e~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne---~~kv~k~~~Kq----es~ 219 (305)
T PF14915_consen 147 EILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNE---QDKVNKYIGKQ----ESL 219 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHH----HHH
Confidence 4566666666666555543 2222222222244555555555555544443333322 33344444333 456
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHH
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFF 579 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f 579 (629)
..+|-+++.+|..||..++..+++. .+|+=+|+-|---|
T Consensus 220 eERL~QlqsEN~LLrQQLddA~~K~---~~kek~ViniQ~~f 258 (305)
T PF14915_consen 220 EERLSQLQSENMLLRQQLDDAHNKA---DNKEKTVINIQDQF 258 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHH
Confidence 7788999999999999998888655 56777777777655
No 271
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=42.15 E-value=2.9e+02 Score=37.06 Aligned_cols=81 Identities=27% Similarity=0.341 Sum_probs=34.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHH
Q 006838 482 KELNQRQQDVFPELDREITRISLLLEKSK--------------LELEELVKWRETMERGLSDLESWKTVVSFRVNELIKE 547 (629)
Q Consensus 482 Eeln~ry~~~f~~l~~el~~~~~~Lek~~--------------aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~re 547 (629)
+++-.+..+.-.+++.++..+...++... .++.++.+.-+..+..+..++.=|...+.++.+|..+
T Consensus 893 ee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e 972 (1930)
T KOG0161|consen 893 EELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEE 972 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555444444432 2233333333333333323333333444455555555
Q ss_pred hhHHHHHHHHHHhhh
Q 006838 548 NSMLRIDVEKVSSDQ 562 (629)
Q Consensus 548 N~~LR~~Ve~v~~~q 562 (629)
...++..+.++-++-
T Consensus 973 ~~~~~e~~~kL~kek 987 (1930)
T KOG0161|consen 973 INSLDENISKLSKEK 987 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555544444333
No 272
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.53 E-value=3.3e+02 Score=31.77 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 006838 493 PELDREITRISLLLEK 508 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek 508 (629)
.+|+.++=++...++-
T Consensus 386 ~~Ls~RiLRv~ikqei 401 (508)
T KOG3091|consen 386 VELSHRILRVMIKQEI 401 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555544443
No 273
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.45 E-value=4.5e+02 Score=28.27 Aligned_cols=105 Identities=18% Similarity=0.295 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHhhhchhhhhH
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISL-------LLEKSKLELEELVKWRETMERGLSDLESW 533 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~-------~Lek~~aeI~~L~e~K~~~ek~~~~l~sw 533 (629)
++|-+|+|++=.|-+... ||+.+-. +.-|.||=.+++-+.. .|++-+.+=+.|.+.+...++.+..+..-
T Consensus 101 ~~l~~raRAmq~nG~~t~-Yidvil~--SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al 177 (265)
T COG3883 101 ELLKKRARAMQVNGTATS-YIDVILN--SKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVAL 177 (265)
T ss_pred HHHHHHHHHHHHcCChhH-HHHHHHc--cCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777666 7776532 3334555444444443 34555677777777888888888777777
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 534 KTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 534 ks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
...+..++++|......+-.-+-.+..+++.+++.
T Consensus 178 ~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e 212 (265)
T COG3883 178 QNELETQLNSLNSQKAEKNALIAALAAKEASALGE 212 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 77777777777777777666666666666666554
No 274
>PF14992 TMCO5: TMCO5 family
Probab=41.43 E-value=5e+02 Score=28.21 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=11.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHH
Q 006838 465 QKVKSLEQNLSVLEDYIKELNQ 486 (629)
Q Consensus 465 qKvksLE~N~Slle~YiEeln~ 486 (629)
.++++|+.+.--.+.-|+++-.
T Consensus 116 ~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 116 NKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5566665555545544444433
No 275
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.41 E-value=89 Score=30.06 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=4.5
Q ss_pred ccchHHHHHHhh
Q 006838 357 GVDAIERMLEDL 368 (629)
Q Consensus 357 G~t~vE~~leD~ 368 (629)
|++++...++.+
T Consensus 31 ~K~~v~k~Ld~L 42 (169)
T PF07106_consen 31 GKTAVQKALDSL 42 (169)
T ss_pred cHHHHHHHHHHH
Confidence 333333333333
No 276
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=41.18 E-value=4.3e+02 Score=27.45 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDR 497 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~ 497 (629)
+...+..+|--.-++++||+++..-+.++-..+-+
T Consensus 15 ~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~ 49 (225)
T COG1842 15 INELLDKAEDPEKMLEQAIRDMESELAKARQALAQ 49 (225)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666678888888887777665544444
No 277
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.12 E-value=1.8e+02 Score=28.83 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh
Q 006838 536 VVSFRVNELIKENSMLRIDVEKVSS 560 (629)
Q Consensus 536 ~VSsqLd~l~reN~~LR~~Ve~v~~ 560 (629)
.+...+..|.-++.++-.++.++..
T Consensus 148 ~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 148 ILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555553
No 278
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=41.00 E-value=3.2e+02 Score=31.89 Aligned_cols=104 Identities=16% Similarity=0.272 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQ---RQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESW 533 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~---ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~sw 533 (629)
++-.|.|-.|-|.|-...-.++-|+..+-+ .|-.++..|..++..+...|+-+++.+.+|.. +++|.==..+..
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~---q~~kq~Is~e~f 370 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHK---QLRKQGISTEQF 370 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHhcCCCHHHH
Confidence 344566777777777777777777766644 45566677777777777777766666666533 233222123444
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 006838 534 KTVVSFRVNELIKENSMLRIDVEKVSSDQAN 564 (629)
Q Consensus 534 ks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~ 564 (629)
+.+++ ..++|.|+..++....+++++.+.+
T Consensus 371 e~mn~-Ere~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 371 ELMNQ-EREKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred HHHHH-HHHHHHHHHHHhcchHHHHHHHHHh
Confidence 45554 5688999999999999888877743
No 279
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=41.00 E-value=4.1e+02 Score=27.39 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 006838 494 ELDREITRISLLLEKS 509 (629)
Q Consensus 494 ~l~~el~~~~~~Lek~ 509 (629)
++++.+.+....|+.|
T Consensus 124 ~l~~~l~ea~~mL~em 139 (264)
T PF06008_consen 124 DLQRALAEAQRMLEEM 139 (264)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 280
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.79 E-value=2.3e+02 Score=24.54 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 495 LDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 495 l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
+++-+...+..|..+..+-..|....-....-+ ..+..+..++......|+.+++.+..+..+++
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~I-------KKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTI-------KKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666555555533222222111 23334444455555555555555555554444
No 281
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=40.61 E-value=2.8e+02 Score=25.52 Aligned_cols=32 Identities=13% Similarity=0.372 Sum_probs=18.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHH
Q 006838 464 MQKVKSLEQNLSVLEDYIKELNQRQQDVFPEL 495 (629)
Q Consensus 464 mqKvksLE~N~Slle~YiEeln~ry~~~f~~l 495 (629)
.+.+..+..++..+...+..+...+...+...
T Consensus 5 ~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~ 36 (151)
T cd00179 5 FEEVEEIRGNIDKISEDVEELQKLHSQLLTAP 36 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555666666666666666665555554433
No 282
>PRK10698 phage shock protein PspA; Provisional
Probab=40.48 E-value=4.2e+02 Score=27.14 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=39.0
Q ss_pred HHHHHhHHHH-HHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 504 LLLEKSKLEL-EELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 504 ~~Lek~~aeI-~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
..|++-+.+| +.-+..|...+..+..++..-.....+++.|......|+..+++.+.++..|-.+
T Consensus 77 ~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR 142 (222)
T PRK10698 77 LALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLR 142 (222)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 2224455566666766666666667777777777777777777777666554433
No 283
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.24 E-value=1.7e+02 Score=33.31 Aligned_cols=11 Identities=36% Similarity=0.329 Sum_probs=5.7
Q ss_pred HHHHHHHHHhh
Q 006838 589 SARLSTLLRAS 599 (629)
Q Consensus 589 ~~~~~~~~~~~ 599 (629)
.+|+.-+|++.
T Consensus 145 ~~R~ai~~~~l 155 (420)
T COG4942 145 SVRLAIYYGAL 155 (420)
T ss_pred HHHHHHHHHHh
Confidence 35555555543
No 284
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.21 E-value=2.7e+02 Score=31.72 Aligned_cols=8 Identities=13% Similarity=0.592 Sum_probs=3.0
Q ss_pred HHHHHHhh
Q 006838 465 QKVKSLEQ 472 (629)
Q Consensus 465 qKvksLE~ 472 (629)
+|+++...
T Consensus 38 ~~l~q~q~ 45 (420)
T COG4942 38 KQLKQIQK 45 (420)
T ss_pred HHHHHHHH
Confidence 33333333
No 285
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=40.03 E-value=4.8e+02 Score=27.60 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHH--------------HHHHHHHHHHhhHHHHHHHHHHhhhhh-h-----cccc
Q 006838 510 KLELEELVKWRETMERGLSDLESWKTVV--------------SFRVNELIKENSMLRIDVEKVSSDQAN-L-----ESKE 569 (629)
Q Consensus 510 ~aeI~~L~e~K~~~ek~~~~l~swks~V--------------SsqLd~l~reN~~LR~~Ve~v~~~q~~-m-----EnK~ 569 (629)
..+|+++...|.++++---|+.++|+++ .++.+.|..|....|..+|+.++.-+. | +.=+
T Consensus 117 e~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~dm~~~l~~e~e 196 (246)
T cd07618 117 EVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLAADMYNFASKEGE 196 (246)
T ss_pred HhHHHHHHHHHHHHHhHHhhHHHHHHHHHhccccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 4568888899999999999999999999 367777777778888888877655433 1 1112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006838 570 LAVLSVSLFFACFAIFKLVSARLSTLLR 597 (629)
Q Consensus 570 laVl~isl~f~~la~~~l~~~~~~~~~~ 597 (629)
.+-.++-|+=+-+-..|-+..++-.+..
T Consensus 197 ~~~~l~~lv~aQ~eYHr~a~e~Le~~~p 224 (246)
T cd07618 197 YAKFFVLLLEAQADYHRKALAVIEKVLP 224 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334555555556666666666665554
No 286
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.93 E-value=5e+02 Score=31.50 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006838 490 DVFPELDREITRISLLLEKSKLELEELVKWRETM 523 (629)
Q Consensus 490 ~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ 523 (629)
....++++...+.....+..+.+.+++.+.|+.+
T Consensus 529 ~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 529 QKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444333
No 287
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=39.85 E-value=3.7e+02 Score=27.40 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry 488 (629)
|-||.|-.||+.||+.-+--+.-+..|++.=
T Consensus 4 sALK~LQeKIrrLELER~qAe~nl~~LS~et 34 (178)
T PF14073_consen 4 SALKNLQEKIRRLELERSQAEDNLKQLSRET 34 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4689999999999999888887777776543
No 288
>PLN02678 seryl-tRNA synthetase
Probab=39.83 E-value=1.5e+02 Score=33.72 Aligned_cols=9 Identities=0% Similarity=-0.031 Sum_probs=3.6
Q ss_pred hHHHHHHHH
Q 006838 458 TVLRILMQK 466 (629)
Q Consensus 458 SVlKiLmqK 466 (629)
-|-+.|.+|
T Consensus 17 ~v~~~l~~R 25 (448)
T PLN02678 17 LIRESQRRR 25 (448)
T ss_pred HHHHHHHhh
Confidence 344444433
No 289
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=39.77 E-value=1.4e+02 Score=26.03 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 539 FRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 539 sqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
..+|....-...+|.+++.+..+++.||.+
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346666777778888888888888888764
No 290
>smart00035 CLa CLUSTERIN alpha chain.
Probab=39.72 E-value=78 Score=32.96 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHH
Q 006838 477 LEDYIKELNQRQQDVFPELDREITRISLLLEKSKLE 512 (629)
Q Consensus 477 le~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~ae 512 (629)
..+-.|.++++|.+++..++..+..|+.+|++++..
T Consensus 103 AL~LaE~ftqqYd~lL~~~q~~m~nTs~Lle~ln~Q 138 (216)
T smart00035 103 SLQLAERFTQQYDQLLQSYQKKMLNTSSLLEQLNEQ 138 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 446678899999999999999999999999999654
No 291
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=39.72 E-value=1.8e+02 Score=32.37 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhchhhhhHHH
Q 006838 513 LEELVKWRETMERGLSDLESWKT 535 (629)
Q Consensus 513 I~~L~e~K~~~ek~~~~l~swks 535 (629)
++.+++.=+.+..++.++..|+.
T Consensus 144 ~~~~~~~~~~v~~~l~~l~~~~~ 166 (406)
T PF04906_consen 144 LQFLQQQAENVVQQLDELPFWRN 166 (406)
T ss_pred HHHHHHHHHHHHHHHhcCccccc
Confidence 44444555555566666666644
No 292
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=39.50 E-value=2.8e+02 Score=33.01 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=49.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhh-hhHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHH
Q 006838 465 QKVKSLEQNLSVLEDYIKELNQRQQDV-FPELDR---EITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFR 540 (629)
Q Consensus 465 qKvksLE~N~Slle~YiEeln~ry~~~-f~~l~~---el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsq 540 (629)
+||..||..-..|..-+...|+-.... .++++. -+...+..+..+..+|+.++. ...+ +++.|+..|
T Consensus 249 ~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~---S~~~---e~e~~~~qI--- 319 (629)
T KOG0963|consen 249 QRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA---SLVE---EREKHKAQI--- 319 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHH---
Confidence 566677777777766666666655443 222222 233333333333344444322 2222 246677644
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 541 VNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 541 Ld~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
.+|.+++...+..+|++++.....
T Consensus 320 -~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 320 -SALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467777888888888777665444
No 293
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=39.40 E-value=2.3e+02 Score=23.86 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHH--HHHHHHHHHHHhhHHHHH
Q 006838 477 LEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTV--VSFRVNELIKENSMLRID 554 (629)
Q Consensus 477 le~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~--VSsqLd~l~reN~~LR~~ 554 (629)
.+.|+.++=+.+. +.++.+-..++...++....+|+.++=. .++.. ++..+..+..+...|+..
T Consensus 8 ~~~~~~~~l~~~s--~~~i~~~~~~L~~~i~~~~~eLr~~V~~------------nY~~fI~as~~I~~m~~~~~~l~~~ 73 (87)
T PF08700_consen 8 VDEYFKDLLKNSS--IKEIRQLENKLRQEIEEKDEELRKLVYE------------NYRDFIEASDEISSMENDLSELRNL 73 (87)
T ss_pred HHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665555544 3444444444444444444444444321 12222 255566666666677777
Q ss_pred HHHHHhhhhhhc
Q 006838 555 VEKVSSDQANLE 566 (629)
Q Consensus 555 Ve~v~~~q~~mE 566 (629)
|..+...+..+.
T Consensus 74 l~~l~~~~~~l~ 85 (87)
T PF08700_consen 74 LSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHhh
Confidence 766666665554
No 294
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=39.10 E-value=3.4e+02 Score=25.60 Aligned_cols=51 Identities=25% Similarity=0.389 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
.|..+|..=|++-+.++..-+...+.+ ..++.++......++.++..+.++
T Consensus 35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~--------~~l~~d~~~l~~~~~rL~~~~~~~ 85 (151)
T PF11559_consen 35 RVINCIYDLLQQRDRDMEQREDLSDKL--------RRLRSDIERLQNDVERLKEQLEEL 85 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445555444444455544443333332 334444444444444444444443
No 295
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.09 E-value=1.1e+02 Score=32.63 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
.+++++...+...|+.+-..|.+++...+...+++
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i 75 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEI 75 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444
No 296
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=39.07 E-value=5.8e+02 Score=28.28 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTV 536 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~ 536 (629)
|.+...|.++++.|+.+....-+--....+.....+.+.+..+.++...+..+|..=..=...=..|.+++..|.-=|.-
T Consensus 24 d~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrN 103 (383)
T PF04100_consen 24 DELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRN 103 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999988875555444444444555555555444444444443222111111112333344333333333
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccch
Q 006838 537 VSFRVNELIKENSMLRIDVEKVSSDQANLESKEL 570 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~l 570 (629)
+..-+.-| +-..+|-.-+++++.-....+=+++
T Consensus 104 LT~SIT~L-krL~MLv~a~~qL~~~~~~r~Y~e~ 136 (383)
T PF04100_consen 104 LTQSITTL-KRLQMLVTAVEQLKELAKKRQYKEI 136 (383)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 33333322 2344566667777754444333343
No 297
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=39.03 E-value=71 Score=26.91 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
+.+++|.++|..|...||.+|....++
T Consensus 13 q~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 13 QTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777665554
No 298
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=38.97 E-value=2.6e+02 Score=29.12 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTLLRASQC 601 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f~~la~~~l~~~~~~~~~~~~~~ 601 (629)
.....+|+++..++..+-.+....... +...-.||+..+=|.-.-..=-.+-.-++.|....+
T Consensus 131 ~k~~~~l~~l~~~v~~l~~~~~~~~~~----~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y~kKqF 193 (256)
T PF14932_consen 131 SKLNNELNQLLGEVSKLASELAHAHSG----QQQNPPVFLSQMPLEQYLSQEEQFTKYLTSYTKKQF 193 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc----ccCCCCchhhhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666665555443322 223455555555444333333344444555554444
No 299
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=38.96 E-value=2.6e+02 Score=28.11 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRI 502 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~ 502 (629)
|.|..|++..|....-|..-.+.++++. ..++.+++++..+
T Consensus 13 k~L~~rL~~~d~~ad~Ll~qa~~l~~~i-~sm~~y~eei~~l 53 (181)
T PF05769_consen 13 KRLVERLKDHDNAADSLLSQAEALNKQI-ESMRQYQEEIQEL 53 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 6778888888888877777777777776 4445555555443
No 300
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=38.95 E-value=1e+02 Score=29.17 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=14.3
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhh
Q 006838 542 NELIKENSMLRIDVEKVSSDQAN 564 (629)
Q Consensus 542 d~l~reN~~LR~~Ve~v~~~q~~ 564 (629)
..+.-||.+||.+-+++|++..+
T Consensus 32 ~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 32 GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHhhHHHHhhHHHHHHHhCC
Confidence 34455666666666666666655
No 301
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=38.84 E-value=3e+02 Score=28.90 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKE 483 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEe 483 (629)
+.-|.+|.+||+.=.....-+..++.+
T Consensus 11 ~~G~~~L~~r~k~g~~~~kel~~f~ke 37 (269)
T cd07673 11 NSGFDVLYHNMKHGQISTKELSDFIRE 37 (269)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888887766666556666655
No 302
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.81 E-value=1.1e+02 Score=28.58 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
..++..|..||..||.+-+.+|+....++.
T Consensus 28 K~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 28 KKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455678999999999999999999987643
No 303
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=38.80 E-value=2.8e+02 Score=26.98 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHH
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRI 553 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~ 553 (629)
.....+++..+..|..+..+.+.-.+.+......+.+...--..-+.+++.|.+||..||.
T Consensus 36 ~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 36 KAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 4455566666666666655555544444455555555544446667888899999998884
No 304
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=38.70 E-value=4.6e+02 Score=33.27 Aligned_cols=95 Identities=22% Similarity=0.312 Sum_probs=52.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh---------------------
Q 006838 467 VKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMER--------------------- 525 (629)
Q Consensus 467 vksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek--------------------- 525 (629)
+-.||.+..+|..-+||=.. -+.++..+|....+-+.+.+.++.+++.-+..+..
T Consensus 179 lAdle~kir~LrqElEEK~e----nll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yke 254 (1195)
T KOG4643|consen 179 LADLEKKIRTLRQELEEKFE----NLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKE 254 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccch
Confidence 44555555555555555332 22444445555555555555555544442222222
Q ss_pred hchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 526 GLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 526 ~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
-++|+ ..|-.++++|.+||.+|-.+-+-+.+..+.++...
T Consensus 255 rlmDs----~fykdRveelkedN~vLleekeMLeeQLq~lrars 294 (1195)
T KOG4643|consen 255 RLMDS----DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARS 294 (1195)
T ss_pred hhhhh----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 23344 34567788999998888777776666666665554
No 305
>PF01834 XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002706 DNA-repair protein Xrcc1 functions in the repair of single-strand DNA breaks in mammalian cells and forms a repair complex with beta-Pol, ligase III and PARP []. The NMR solution structure of the Xrcc1 N-terminal domain (Xrcc1 NTD) shows that the structural core is a beta-sandwich with beta-strands connected by loops, three helices and two short two-stranded beta-sheets at each connection side. The Xrcc1 NTD specifically binds single-strand break DNA (gapped and nicked) and a gapped DNA-beta-Pol complex [].; GO: 0003684 damaged DNA binding, 0000012 single strand break repair, 0005634 nucleus; PDB: 3K77_E 3K75_C 3LQC_A 1XNA_A 1XNT_A.
Probab=38.21 E-value=3e+02 Score=27.38 Aligned_cols=118 Identities=22% Similarity=0.292 Sum_probs=65.7
Q ss_pred Eeecccc--ccccCcccccCcccccccccCC---CCcEEEEEecceeeecEEEEeecccccCCCCeEEEEeecc----CC
Q 006838 232 LVAHNKE--AKGASNILGKDHNKYLRNPCSV---AGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLS----YP 302 (629)
Q Consensus 232 Il~sn~e--akgasnIL~~nkD~YMLnPCsa---~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS~~----YP 302 (629)
|++.++| .-.|.|+|.+| .|-.=-|.. ...+|+++|.++-+|..|.|.| +.|+|=++.|--|.. -+
T Consensus 9 VvS~SSed~~~~A~NLL~~d--~~r~W~~~~~gek~~~V~lQl~~~~~I~~IDIGN---~gSAfiEVlVg~S~~~~~~~~ 83 (153)
T PF01834_consen 9 VVSFSSEDPVHPAENLLKSD--TYRKWKCAKAGEKQASVELQLEKASQITSIDIGN---EGSAFIEVLVGRSSWSSTASD 83 (153)
T ss_dssp EEEESSS-SSSHGGGGSCGG--GCHHEEHSSTT-SEEEEEEEEEEEE--SEEEEEE---EB-SEEEEEEE-STTS--SSG
T ss_pred EEEEeCCCCCCchhhccCcc--cCCcccccCCCCceEEEEEEecCceEEEEEeccC---CCeEEEEEEeeccccccccCC
Confidence 4444432 33588999875 354334443 2348999999999999999999 456664444433321 13
Q ss_pred CCCceeeEEEEe---------eccccceeeeCCC-------CceEEEEEEEEeeccCCc-ceeeeeEEEEe
Q 006838 303 TEVWSPLGKFVA---------TNVKQLQSFKLPE-------PKWVRYLKLNLLSHYGSE-FYCTLSVVEVY 356 (629)
Q Consensus 303 t~~W~~LG~F~a---------~N~R~~Q~F~L~~-------~~w~RYLKle~LSHyGsE-~YC~LS~vrVy 356 (629)
.+-|.+|-.=.. .|..+.+.|.=.. .+| ..|||--.-=|... -|= |+-|++|
T Consensus 84 ~~f~~Ll~~ssfMsp~eSk~~~n~nrVr~F~~~~l~~~~~~~kW-DrvkivC~QPfnk~~~yG-LsFi~~~ 152 (153)
T PF01834_consen 84 QDFEVLLPSSSFMSPSESKNGTNRNRVRMFGKDKLNKAAAEEKW-DRVKIVCSQPFNKHVQYG-LSFIKFH 152 (153)
T ss_dssp GGSEEEEEEEESS-HHHHHHTSSTTEEEEE-TTTS-HHHHHS-E-EEEEEEEE-TS-SSS--E-EEEEEEE
T ss_pred CCcEEEEeccCCcCHHHHhCcCCcceeEeechhhcChhhhhcCc-cEEEEEEeCCCCCCCccc-eEEEEEe
Confidence 445777654442 3556677886432 245 45777766666643 444 6777776
No 306
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=37.88 E-value=3.4e+02 Score=25.32 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHHhhhhh-HHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhH
Q 006838 456 GDTVLRILMQKVKSLEQNLS-VLEDY-IKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESW 533 (629)
Q Consensus 456 gdSVlKiLmqKvksLE~N~S-lle~Y-iEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~sw 533 (629)
+|.-||.|++++..+=.... .+... .++...-| .++-.+|......+.+++.-+. .-+++......-
T Consensus 14 ~dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~----e~~l~~l~~~e~~~~k~q~~~~-------~n~~e~e~Y~~~ 82 (139)
T PF05615_consen 14 DDRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLY----ERLLKELAQFEFSILKSQLILE-------MNKRERENYEQL 82 (139)
T ss_pred CchhHHHHHHHHHHHHhhhccccccccchhHHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 47778888888776622111 11111 23333333 3333344444444444322111 112222223333
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccch
Q 006838 534 KTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKEL 570 (629)
Q Consensus 534 ks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~l 570 (629)
+..+....+++..+...|+.+++..+....+.+-+..
T Consensus 83 ~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~ 119 (139)
T PF05615_consen 83 NEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDA 119 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788888899999999888877766664433
No 307
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.77 E-value=2.7e+02 Score=32.89 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=16.7
Q ss_pred HHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHH
Q 006838 519 WRETMERGLSDLESWKTVVSFRVNELIKENSMLRI 553 (629)
Q Consensus 519 ~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~ 553 (629)
.+..|++.+..+.+=-..+..+.+.|+.+|.-|+.
T Consensus 288 k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 288 KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444334445555555555555443
No 308
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=37.11 E-value=5.6e+02 Score=33.09 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=41.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhh--HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006838 486 QRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLES--WKTVVSFRVNELIKENSMLRIDVEKV 558 (629)
Q Consensus 486 ~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~s--wks~VSsqLd~l~reN~~LR~~Ve~v 558 (629)
.+...++.+++.+++....-++..+.++..+++.|..-...+.+.+. -+..+..+|.-++.++..++.+..++
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777776666666666666665544433333444433 44455555555555555555555555
No 309
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=37.09 E-value=4.4e+02 Score=30.85 Aligned_cols=102 Identities=11% Similarity=0.081 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVV 537 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~V 537 (629)
=|-+.-|+||..|=.- .+..+.=..+|.+--..|.+.|..-....+.+..+|+.....-..++.|+ ..-+.-+
T Consensus 413 LIk~~Y~~RI~eLt~q----lQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL---~TTr~NY 485 (518)
T PF10212_consen 413 LIKSYYMSRIEELTSQ----LQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL---ETTRRNY 485 (518)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhH
Confidence 3566677777655332 23333333444444444444444444444444444444444443444333 5556778
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
..||..|.-....|...+.+-++++.+++
T Consensus 486 E~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 486 EEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888888887765
No 310
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.00 E-value=5.3e+02 Score=32.64 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDR 497 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~ 497 (629)
|+-|-.+-++||-+...-.+||.-|-++-...-+++++
T Consensus 183 L~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~ 220 (1072)
T KOG0979|consen 183 LMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVER 220 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45556677888888888888888777776666555554
No 311
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.86 E-value=2.8e+02 Score=27.91 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 006838 532 SWKTVVSFRVNELIKENSMLRIDVEKVSSDQAN 564 (629)
Q Consensus 532 swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~ 564 (629)
.=...+-.|||++...|.+|+.++.++..+...
T Consensus 81 qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 81 QVNALLREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677888888888888888888887766554
No 312
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=36.81 E-value=2.5e+02 Score=28.42 Aligned_cols=93 Identities=14% Similarity=0.228 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhhhhHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 006838 461 RILMQKVKSLEQNLSVL---EDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVV 537 (629)
Q Consensus 461 KiLmqKvksLE~N~Sll---e~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~V 537 (629)
+-|.+.|..|..-+--+ .+-++.+..|.-.++..|+..=+.+.-+|.....||+.|.+.-....... ..+
T Consensus 15 ~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~-------r~~ 87 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQE-------REL 87 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 34555555554433322 35677788899999999999889999999999999999987655544333 445
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHh
Q 006838 538 SFRVNELIKENSMLRIDVEKVSS 560 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~ 560 (629)
+.++-+...+...++..+..+..
T Consensus 88 ~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 88 ERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666553
No 313
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=36.80 E-value=6e+02 Score=27.84 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhhhHH-HHHHHHHHHHHhhhhhHHH
Q 006838 463 LMQKVKSLEQNLSVL-EDYIKELNQRQQDVFPELD 496 (629)
Q Consensus 463 LmqKvksLE~N~Sll-e~YiEeln~ry~~~f~~l~ 496 (629)
|+..|..|+.-+++| ..-|+.+.+|+.....+++
T Consensus 244 l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~ 278 (388)
T PF04912_consen 244 LLPALNELERQLSLLDPAKLDSIERRLKSLLSELE 278 (388)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444 2356666777766666664
No 314
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=36.74 E-value=4.3e+02 Score=30.84 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry 488 (629)
+-.++-+-+|++.+|....-+++.++++...+
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~ 245 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKY 245 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544444444444444333
No 315
>PRK12704 phosphodiesterase; Provisional
Probab=36.67 E-value=7.3e+02 Score=28.76 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=26.4
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHH
Q 006838 541 VNELIKENSMLRIDVEKVSSDQANLESKELAVLSVS 576 (629)
Q Consensus 541 Ld~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~is 576 (629)
-+++.+|.+.+-.+++.-.+..++.+.|.+.+.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~a~q 199 (520)
T PRK12704 164 EEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQ 199 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777788888888888888887664443
No 316
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=36.59 E-value=2.8e+02 Score=30.49 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
-++||++.+....||-+|.+++++..+++.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6788899999999999999998888877754
No 317
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=36.31 E-value=4.6e+02 Score=30.19 Aligned_cols=95 Identities=22% Similarity=0.275 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQD-VFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKT 535 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~-~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks 535 (629)
|+..-.|-.-+..+|-.--+-++|++.|.+.-.+ --+++.+++.++..-=+++-..|+++.+.++..+.++-+.++=+-
T Consensus 142 d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~ 221 (447)
T KOG2751|consen 142 DVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAE 221 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555556666655554433 233444444444333333444456666666666666655555555
Q ss_pred HHHHHHHHHHHHhhHH
Q 006838 536 VVSFRVNELIKENSML 551 (629)
Q Consensus 536 ~VSsqLd~l~reN~~L 551 (629)
...-+.+...|+-...
T Consensus 222 ~~~e~~~~~~~ey~~~ 237 (447)
T KOG2751|consen 222 RLNEEEDQYWREYNNF 237 (447)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555554443333
No 318
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=36.17 E-value=5.7e+02 Score=30.63 Aligned_cols=105 Identities=20% Similarity=0.261 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHhh-------
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRIS-------LLLEKSKLELEELVKWRETMER------- 525 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~-------~~Lek~~aeI~~L~e~K~~~ek------- 525 (629)
...+..+++.||.+.+.|..-++.--......+..+|++.+-.. .-|+..+..|..++...++...
T Consensus 191 ~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 191 EQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34566778888888888877776655555555555444433222 2233334444444332222111
Q ss_pred --hch---hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 526 --GLS---DLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 526 --~~~---~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
++. ++ ..+..+|+...+++..|..+|++++.--++...+
T Consensus 271 ~~~~~~~~~i----~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~ 314 (629)
T KOG0963|consen 271 SKKLAKIDDI----DALGSVLNQKDSEIAQLSNDIERLEASLVEEREK 314 (629)
T ss_pred hhhhccCCch----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 22 4567788889999999999998888655544444
No 319
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.16 E-value=3.4e+02 Score=30.66 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=30.2
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHH
Q 006838 450 PIGRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQ-DVFPELDREITRISLLLEK 508 (629)
Q Consensus 450 ~~~r~~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~-~~f~~l~~el~~~~~~Lek 508 (629)
+.=|+|=+..+|++-.--|.++...+..-.=+.++.+... +.-+-+|.-.+.++.++++
T Consensus 10 ~l~ripye~l~kr~r~~qk~i~re~~~v~~~~~~l~~~~~sn~~~~~d~~~~~id~Li~k 69 (389)
T KOG0396|consen 10 QLFRIPYELLNKRIRHNQKVIDRETSHVLMVVAELQETLISNIVPHLDSTVSLIDRLIRK 69 (389)
T ss_pred hhhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH
Confidence 3446666666666655555566655555555555554332 2333344444444444444
No 320
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=36.16 E-value=4.8e+02 Score=26.73 Aligned_cols=7 Identities=14% Similarity=0.530 Sum_probs=3.2
Q ss_pred cCccchh
Q 006838 607 TNRGWVL 613 (629)
Q Consensus 607 ~~~~w~~ 613 (629)
...+|.-
T Consensus 210 ~~~~W~~ 216 (251)
T PF11932_consen 210 ATGQWQW 216 (251)
T ss_pred CCCCCeE
Confidence 3445543
No 321
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.06 E-value=5.6e+02 Score=31.10 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHH
Q 006838 474 LSVLEDYIKELNQ 486 (629)
Q Consensus 474 ~Slle~YiEeln~ 486 (629)
..-+++.|++|++
T Consensus 515 ~~~~~~li~~l~~ 527 (782)
T PRK00409 515 KEKLNELIASLEE 527 (782)
T ss_pred hhHHHHHHHHHHH
Confidence 3344455544443
No 322
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.00 E-value=2.7e+02 Score=32.76 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=18.2
Q ss_pred HHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHH
Q 006838 506 LEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNEL 544 (629)
Q Consensus 506 Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l 544 (629)
|+.+.++|..|...++.+...+.|+..|...+..+|++|
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L 337 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQL 337 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 333334444444444445444555555555554444443
No 323
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=35.72 E-value=3e+02 Score=28.13 Aligned_cols=51 Identities=27% Similarity=0.300 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHhhhchhhh
Q 006838 481 IKELNQRQQDVFPELDREITRISLLLEKSKLELEELVK---WRETMERGLSDLE 531 (629)
Q Consensus 481 iEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e---~K~~~ek~~~~l~ 531 (629)
-+++-.+|.....+|+..|-+....+..++.+|..|.+ .|+.+++++.+|+
T Consensus 38 r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le 91 (206)
T PF14988_consen 38 RQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLE 91 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888777555544 6777777775554
No 324
>smart00338 BRLZ basic region leucin zipper.
Probab=35.72 E-value=79 Score=25.93 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
..+..++++|..+|..|+.+|+.++.+...|.+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777777777777777776665544
No 325
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=35.68 E-value=4e+02 Score=27.52 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 006838 576 SLFFACFAIF 585 (629)
Q Consensus 576 sl~f~~la~~ 585 (629)
.++.++++++
T Consensus 187 ~li~~~~~i~ 196 (207)
T COG5278 187 ALIIGGIVIL 196 (207)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 326
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=35.65 E-value=3.9e+02 Score=31.52 Aligned_cols=71 Identities=15% Similarity=0.288 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
.+++..+..+..+-+|-...+.++.++++.+..++.+| ...+..+++|..+...++.++.+..+.....-.
T Consensus 300 ~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L----~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~ 370 (557)
T COG0497 300 EEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQL----DNSEESLEALEKEVKKLKAELLEAAEALSAIRK 370 (557)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555665666888999999998888777 445556677777777777777766665544433
No 327
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=35.54 E-value=3e+02 Score=27.65 Aligned_cols=12 Identities=25% Similarity=0.213 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHH
Q 006838 458 TVLRILMQKVKS 469 (629)
Q Consensus 458 SVlKiLmqKvks 469 (629)
||=-.|.+|.+.
T Consensus 102 Svk~~~~~R~~~ 113 (216)
T cd07627 102 SVRAAFAQRQKL 113 (216)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 328
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=35.51 E-value=2.9e+02 Score=32.07 Aligned_cols=78 Identities=21% Similarity=0.184 Sum_probs=44.2
Q ss_pred eeecCCCCCCchhHH---HHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHhHHHHHHHHH
Q 006838 446 VRQHPIGRIPGDTVL---RILMQKVKSLEQNLSV-LEDYIKELNQRQQDVFP---ELDREITRISLLLEKSKLELEELVK 518 (629)
Q Consensus 446 ~~q~~~~r~~gdSVl---KiLmqKvksLE~N~Sl-le~YiEeln~ry~~~f~---~l~~el~~~~~~Lek~~aeI~~L~e 518 (629)
+++...+|.-.--+| +.|-+|++.+|.-.+. =|.|+++.+.+...++. ++...+..+..++.+.....+++-|
T Consensus 191 ~~~ll~~Rve~le~~Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de 270 (554)
T KOG4677|consen 191 VRRLLKGRVESLERFSALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDE 270 (554)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445554443333 6677777777766554 36688888877766652 2333455666666666444455444
Q ss_pred HHHHH
Q 006838 519 WRETM 523 (629)
Q Consensus 519 ~K~~~ 523 (629)
.|...
T Consensus 271 ~k~~~ 275 (554)
T KOG4677|consen 271 QKLLL 275 (554)
T ss_pred HHHHH
Confidence 44333
No 329
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=35.47 E-value=5.5e+02 Score=28.39 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=15.9
Q ss_pred eeeCCCCceEEEEEEEEeeccCCcce
Q 006838 322 SFKLPEPKWVRYLKLNLLSHYGSEFY 347 (629)
Q Consensus 322 ~F~L~~~~w~RYLKle~LSHyGsE~Y 347 (629)
...+..|.-.=||++.+...-|+.|.
T Consensus 8 i~~~s~p~~~yfL~~~W~~~~~~~F~ 33 (342)
T PF06632_consen 8 IHISSEPDSIYFLQVSWEKDLGSGFD 33 (342)
T ss_dssp EEETTSCSSEEEEEEEESSSGGGEEE
T ss_pred eecCCCCCceEEEEEEeccCCCCceE
Confidence 34455665556788888765555443
No 330
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=35.32 E-value=85 Score=32.85 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006838 479 DYIKELNQRQQDVFPELDREITR-ISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEK 557 (629)
Q Consensus 479 ~YiEeln~ry~~~f~~l~~el~~-~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~ 557 (629)
.-|++--..|.+.+|.++.+-.. +..+|.+.+..|..|++.- ..-+.++|+|.||+..|..++++
T Consensus 72 ahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~--------------~~~~~~~e~l~~e~~~l~~rl~q 137 (232)
T KOG2483|consen 72 AHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKS--------------ATQQQDIEDLSRENRKLKARLEQ 137 (232)
T ss_pred HHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888999999988777 5888888888888884322 23345679999999999999999
Q ss_pred HHhhh
Q 006838 558 VSSDQ 562 (629)
Q Consensus 558 v~~~q 562 (629)
+...+
T Consensus 138 l~~~~ 142 (232)
T KOG2483|consen 138 LSLPQ 142 (232)
T ss_pred hcCcc
Confidence 88555
No 331
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.22 E-value=5e+02 Score=28.48 Aligned_cols=88 Identities=20% Similarity=0.219 Sum_probs=50.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHH--HHHHHHHhhHHHHHHHHHHhh
Q 006838 484 LNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFR--VNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 484 ln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsq--Ld~l~reN~~LR~~Ve~v~~~ 561 (629)
-=+|+++.+++-++.|...+.-++.+|..|..++| |=+|.|- -+|++| |-+.++|..-||.-||.|+..
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE--DWIEEEC-------HRVEAQLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMRE--DWIEEEC-------HRVEAQLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455556666666666666656666655555543 1223222 344444 456777777777777777765
Q ss_pred hh-------------hhcccchhHHHHHHHHH
Q 006838 562 QA-------------NLESKELAVLSVSLFFA 580 (629)
Q Consensus 562 q~-------------~mEnK~laVl~isl~f~ 580 (629)
.. |.+||-|=.|+-|.=+|
T Consensus 140 L~ekDkGiQKYFvDINiQN~KLEsLLqsMElA 171 (305)
T PF15290_consen 140 LAEKDKGIQKYFVDINIQNKKLESLLQSMELA 171 (305)
T ss_pred hchhhhhHHHHHhhhhhhHhHHHHHHHHHHHH
Confidence 43 34666666666655433
No 332
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=35.19 E-value=5.7e+02 Score=31.53 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 006838 538 SFRVNELIKENSMLRIDVE 556 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve 556 (629)
..+|+...+||..|...|.
T Consensus 514 q~kLe~sekEN~iL~itlr 532 (861)
T PF15254_consen 514 QFKLEASEKENQILGITLR 532 (861)
T ss_pred hhhHHHHHhhhhHhhhHHH
Confidence 4566777777777766553
No 333
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=35.08 E-value=6.2e+02 Score=30.87 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhh----------
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLES---------- 532 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~s---------- 532 (629)
.-.+|..||.-+++ +.+-++.|...+.+|-.+|.+-...=..+.+....|.--+..++.+.+++..
T Consensus 448 ~ekev~dLe~~l~~----~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~ 523 (786)
T PF05483_consen 448 REKEVHDLEIQLTT----IKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDIN 523 (786)
T ss_pred hhhHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33445555544443 2346788888888888887752111111112222222223333333322211
Q ss_pred ----HHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 533 ----WKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 533 ----wks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
=.-.+-.|.++|...+..||.+++-++++.
T Consensus 524 ~~k~qee~~~kqie~Lee~~~~Lrneles~~eel 557 (786)
T PF05483_consen 524 NSKKQEEKMLKQIENLEETNTQLRNELESVKEEL 557 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234477888888888888888887654
No 334
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=35.07 E-value=99 Score=32.28 Aligned_cols=18 Identities=6% Similarity=0.477 Sum_probs=7.3
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 006838 540 RVNELIKENSMLRIDVEK 557 (629)
Q Consensus 540 qLd~l~reN~~LR~~Ve~ 557 (629)
+|+++++....+-.++.+
T Consensus 83 ~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 83 QLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 335
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=35.01 E-value=4.3e+02 Score=25.64 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPE 494 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~ 494 (629)
+.-|-+.|..++-+.+-...|+..+...|...++.
T Consensus 38 i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~ 72 (146)
T PF08702_consen 38 IQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQ 72 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccc
Confidence 34455666677777777778888887777776655
No 336
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=34.82 E-value=4.1e+02 Score=27.75 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 499 ITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 499 l~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+.....+|+..+.++..|.+=|..-+.+|.++..=...+..-+-++..|....+..+.++.++.
T Consensus 27 ~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey 90 (230)
T PF10146_consen 27 LENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666665555555555544443334444444555555555555554444443
No 337
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=34.53 E-value=4e+02 Score=29.49 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=27.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 006838 468 KSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEK 508 (629)
Q Consensus 468 ksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek 508 (629)
+.+|.+.-.-+-|+..|+.-...++.++..+=.-+.-.|..
T Consensus 237 ~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~ 277 (384)
T KOG0972|consen 237 KNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLAS 277 (384)
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888887777776665544444444433
No 338
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=34.46 E-value=4.3e+02 Score=31.12 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=38.1
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 471 EQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 471 E~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
+.-..-+.+|.||.++.. +.+-|+++.+--+....+.+.+.|....+.++++.-|+.+++
T Consensus 222 ~~kt~el~~q~Ee~skLl-sql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLL-SQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333334556666655443 445677777777777777777777777777777776665554
No 339
>PRK06041 flagellar assembly protein J; Reviewed
Probab=34.42 E-value=3.3e+02 Score=31.66 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH----HhhhhhHHHH-HHHHHHHHHHHhHHHH
Q 006838 459 VLRILMQKVKSLEQNLSVLEDYIKELNQR----QQDVFPELDR-EITRISLLLEKSKLEL 513 (629)
Q Consensus 459 VlKiLmqKvksLE~N~Slle~YiEeln~r----y~~~f~~l~~-el~~~~~~Lek~~aeI 513 (629)
|+++-.+|++..|.+..-.-|++-+.++- ..++++.+.+ |+..+..-++++..+|
T Consensus 315 v~~~~er~i~~~e~~~p~Flr~Las~~~~~G~t~~~al~~l~~~d~G~Lt~~i~~l~~~L 374 (553)
T PRK06041 315 VARKEEKKIKRRDENFPSFIRSLGSSVSAKGGTTTEALKYLDKKDFGPLTPDINALYKRL 374 (553)
T ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHhcccCCCHHHHHHHHhhccCCCChHHHHHHHHHh
Confidence 67888899999999999999999888753 3456677766 7777777777775554
No 340
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=34.40 E-value=1.3e+02 Score=28.50 Aligned_cols=47 Identities=26% Similarity=0.234 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006838 490 DVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEK 557 (629)
Q Consensus 490 ~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~ 557 (629)
+++-+|+..+..+...|..+|..+.+|+|-. ..|+-||..||.++-.
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN---------------------~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEEN---------------------TALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------HHHHhhHHHHHHHhCC
Confidence 3445667777777777777777777775432 3466788888888765
No 341
>PRK09343 prefoldin subunit beta; Provisional
Probab=34.38 E-value=3.7e+02 Score=25.05 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQ 486 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ 486 (629)
++.+.+..+.||..+.-.+.=++||+.
T Consensus 23 l~~~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 23 LERLLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344445556666666666666666654
No 342
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=34.33 E-value=4.7e+02 Score=28.83 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHH
Q 006838 476 VLEDYIKELNQRQQDVFPELDREITRISLLL----EKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSML 551 (629)
Q Consensus 476 lle~YiEeln~ry~~~f~~l~~el~~~~~~L----ek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~L 551 (629)
.+-+-|.++-.-++++...|+...+++...= +-|++.++.+++.=..=+++| |+.+...++.--++++.+...|
T Consensus 3 ~mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqaqEreL--Le~v~~rYqR~y~ema~~L~~L 80 (324)
T PF12126_consen 3 AMTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQAQEREL--LEAVEARYQRDYEEMAGQLGRL 80 (324)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHH
Confidence 3445566777777777666666554443221 114555555555544556666 6667777766555555555444
Q ss_pred HHHH
Q 006838 552 RIDV 555 (629)
Q Consensus 552 R~~V 555 (629)
-.-+
T Consensus 81 eavL 84 (324)
T PF12126_consen 81 EAVL 84 (324)
T ss_pred HHHH
Confidence 4433
No 343
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=34.32 E-value=8.2e+02 Score=31.11 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHhhhhhHH-HHHH------HHHHHH---HhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 006838 457 DTVLRILMQKVKSLEQNLSVL-EDYI------KELNQR---QQDVFPELDREITRISLLLEKSKLELEELVKWRETMERG 526 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Sll-e~Yi------Eeln~r---y~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~ 526 (629)
.--++-+.++|..+|.++.-+ +.|. ++|..+ +...+.+-..+|..+..-++++++.|+...+--.++++-
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~s 526 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKS 526 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666555433 2333 123322 333333333456666666666655544433322222221
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006838 527 LSDLESWKTVVSFRVNELIKENSMLRIDVEK 557 (629)
Q Consensus 527 ~~~l~swks~VSsqLd~l~reN~~LR~~Ve~ 557 (629)
...+..--..+...++..+.|+..|...+.+
T Consensus 527 e~~l~~~a~~l~~~~~~s~~d~s~l~~kld~ 557 (1041)
T KOG0243|consen 527 EEKLVDRATKLRRSLEESQDDLSSLFEKLDR 557 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111111344455556666666655555543
No 344
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=34.31 E-value=37 Score=39.88 Aligned_cols=97 Identities=26% Similarity=0.361 Sum_probs=20.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHH
Q 006838 464 MQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNE 543 (629)
Q Consensus 464 mqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~ 543 (629)
++|++.+|.-...+..|..++.. .+.+++++++...........++..+.+....-+..+.-...=-..+..+++.
T Consensus 439 ~~~~~~~~~l~~~~~~~~~ele~----~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~ 514 (722)
T PF05557_consen 439 TQRIKEIEDLEQLVDEYKAELEA----QLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEE 514 (722)
T ss_dssp -----------------------------------------------------------HHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHH
Confidence 56666666655556666666554 33555555544443333333344444333222221111111111225556667
Q ss_pred HHHHhhHHHHHHHHHHhhhhh
Q 006838 544 LIKENSMLRIDVEKVSSDQAN 564 (629)
Q Consensus 544 l~reN~~LR~~Ve~v~~~q~~ 564 (629)
|.+++..|+.+++.+..++..
T Consensus 515 Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 515 LERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766665554
No 345
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=34.26 E-value=2.2e+02 Score=27.99 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=58.8
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhH
Q 006838 471 EQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSM 550 (629)
Q Consensus 471 E~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~ 550 (629)
=+|.|++..|+|=+.. .+..=...++.+..+..++-||--=|.++.-.| + -++....+..|+++-..+...
T Consensus 79 kL~~sll~nfleLl~~-l~~~P~~~~~ki~~i~~L~~NmhhllNeyRPhQ---A-----RetLi~~me~Ql~~kr~~i~~ 149 (162)
T PF05983_consen 79 KLNKSLLLNFLELLDI-LSKNPSQYERKIEDIRLLFINMHHLLNEYRPHQ---A-----RETLIMMMEEQLEEKREEIEE 149 (162)
T ss_dssp HHHHHHHHHHHHHTTS-S---CCCHHHHHHHHHHHHHHHHHHHHHTHHHH---H-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHhCCccHHHHHHHHHHHHHHHHHHHHHhCHHH---H-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999985521 111114556678888888888866677766555 2 133557889999999999999
Q ss_pred HHHHHHHHHhhh
Q 006838 551 LRIDVEKVSSDQ 562 (629)
Q Consensus 551 LR~~Ve~v~~~q 562 (629)
||..++++++..
T Consensus 150 i~~~~~~~~~~l 161 (162)
T PF05983_consen 150 IRKVCEKAREVL 161 (162)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 346
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=34.18 E-value=2.6e+02 Score=28.30 Aligned_cols=74 Identities=27% Similarity=0.365 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH--------------------------hh----hhhHHHHHHHHHHHHHHHhHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQ--------------------------QD----VFPELDREITRISLLLEKSKL 511 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry--------------------------~~----~f~~l~~el~~~~~~Lek~~a 511 (629)
-+-|.|+.|.--...+|+|++++-..- .+ ...+-+++++. ..+++..
T Consensus 43 gik~~V~~L~aRV~alE~~l~dq~ll~~wGC~~k~~iC~T~vpw~~~~N~s~~W~~~n~Tw~~W~~~i~~---~~~~i~~ 119 (204)
T PF00517_consen 43 GIKQGVKQLQARVLALERYLKDQQLLNIWGCSGKQHICHTPVPWNSWYNKSEIWNRLNMTWQQWEKEISN---YTGNIYN 119 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-SBSS-SSSS-S--B-----S---SS--HH--HHHHHHHHHHHHH---HHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHHhhhHHHHHhcccCCCcceeCCCCccccCCCccccCchHHhhHHHHHHHhcc---cHHHHHH
Confidence 344566668888999999999875432 11 11223333333 3344555
Q ss_pred HHHHHHHHHHHHhhhchhhhhHHHHHH
Q 006838 512 ELEELVKWRETMERGLSDLESWKTVVS 538 (629)
Q Consensus 512 eI~~L~e~K~~~ek~~~~l~swks~VS 538 (629)
.|++.+++++..++++..+.+|....+
T Consensus 120 ll~~a~~qqe~n~~~l~~Ld~w~~l~~ 146 (204)
T PF00517_consen 120 LLEEAQNQQEKNEQDLLKLDSWTNLWS 146 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHhchhhhhhhhcCCcHHhhhhh
Confidence 577777888888999999999887665
No 347
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.01 E-value=5.5e+02 Score=33.06 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=16.2
Q ss_pred hhhHHHHH---HHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 530 LESWKTVV---SFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 530 l~swks~V---SsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+.+||..+ +..|+++..+...|+..+.+.+.++
T Consensus 551 l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrv 586 (1293)
T KOG0996|consen 551 LPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRV 586 (1293)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554433 5556666666664444444444333
No 348
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=33.92 E-value=3.2e+02 Score=23.83 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=32.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006838 483 ELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKV 558 (629)
Q Consensus 483 eln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v 558 (629)
||..++-.+|..|++++.+--...+.. ..+|+.+=+.+.++. ..++.|.++|.+-...|...|+++
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~s---y~~Lq~~~~~t~~~~-------a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSS---YADLQHMFEQTSQEN-------AALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555443333332 333333333333333 244556666666666666666554
No 349
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=33.89 E-value=4.9e+02 Score=25.89 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=35.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 504 LLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 504 ~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
..|.-++..-..|..+|+..++.+..+..--.....-+.++--=..-|..++..|-....+++.|
T Consensus 91 ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 91 VRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34444566666777777777766655543333333344444444445556666665555555544
No 350
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.80 E-value=2e+02 Score=25.48 Aligned_cols=51 Identities=27% Similarity=0.309 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
-|-+||-.||.-...=|+-|++||.-. .+-+..+++....|+-+...++++
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~l----aEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDAL----AEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356799999999999999999998765 455555555555544443333333
No 351
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.71 E-value=5.3e+02 Score=30.69 Aligned_cols=104 Identities=14% Similarity=0.105 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhh
Q 006838 457 DTVLRILMQKVKSLEQNLS----VLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLES 532 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~S----lle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~s 532 (629)
.-=.|.|..||-+|--.++ -+..|=|+.++.-+.. .+.|++|...+++||.-+.++.++..+= .-++.+.|
T Consensus 337 ~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~g-lk~ds~Lk~leIalEqkkEec~kme~qL-kkAh~~~d--- 411 (654)
T KOG4809|consen 337 RKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAG-LKRDSKLKSLEIALEQKKEECSKMEAQL-KKAHNIED--- 411 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhH---
Confidence 3446788888887765443 3556666766655544 5689999999999999888888774322 22333322
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 533 WKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
.++++-.+++++|+..-=++++++.-......+
T Consensus 412 -dar~~pe~~d~i~~le~e~~~y~de~~kaqaev 444 (654)
T KOG4809|consen 412 -DARMNPEFADQIKQLEKEASYYRDECGKAQAEV 444 (654)
T ss_pred -hhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 256666677777776666666665554444333
No 352
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=33.65 E-value=2.9e+02 Score=31.89 Aligned_cols=60 Identities=25% Similarity=0.338 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHHHHhHHHHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELD---REITRISLLLEKSKLELEELV 517 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~---~el~~~~~~Lek~~aeI~~L~ 517 (629)
...+-+.++++.|+-..-.+..-+++-..-|+.+...++ +++..+......+...|.+|.
T Consensus 344 ~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~ 406 (560)
T PF06160_consen 344 EIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLR 406 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888888777776654443 355555555555555555553
No 353
>PRK06798 fliD flagellar capping protein; Validated
Probab=33.55 E-value=1.3e+02 Score=33.71 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLEL 513 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI 513 (629)
|-.|.++|+....-+++.++.+..||-..-..|.++++..+..+.+|++..
T Consensus 377 i~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~lnsQ~ 427 (440)
T PRK06798 377 IGERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAALDSQL 427 (440)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666655555555555555555555554443
No 354
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.52 E-value=3.1e+02 Score=23.60 Aligned_cols=27 Identities=4% Similarity=-0.048 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
..+...-|...+-......+..+++.+
T Consensus 29 k~L~~ERd~~~~~l~~a~~e~~~Lk~E 55 (69)
T PF14197_consen 29 KRLRRERDSAERQLGDAYEENNKLKEE 55 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 355
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=33.50 E-value=1.8e+02 Score=28.46 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 510 KLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 510 ~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
|.+|-.|.+.| -+=|-=+=-.+-+..==.|-++|.+++..|+.+|++++++.+.|
T Consensus 46 reEVvrlKQrR-RTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~ 100 (135)
T KOG4196|consen 46 REEVVRLKQRR-RTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRL 100 (135)
T ss_pred HHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555664444 33333333455555555677889999999999999888777554
No 356
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=33.35 E-value=5.4e+02 Score=26.22 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQD----------VFPELDREITRISLLLEKSKLELEELVKWRETMERG 526 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~----------~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~ 526 (629)
+-+|.==-+-|..||..+.--+.-+++....+.. +..+-+..+..+..+|+..+..+.+....=.....+
T Consensus 59 eAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~e 138 (188)
T PF05335_consen 59 EAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQE 138 (188)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555667777777777777666655533 234555667777777777776666665544444444
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 006838 527 LSDLESWKTVVSFRVNELIKENSMLRIDVEKVSS 560 (629)
Q Consensus 527 ~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~ 560 (629)
+.+-...-.....+++.|.|.....|.++++.++
T Consensus 139 l~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 139 LAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444434445567788888888888888877764
No 357
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=33.23 E-value=4e+02 Score=24.77 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 006838 539 FRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 539 sqLd~l~reN~~LR~~Ve~v~ 559 (629)
.+++.+..+...++..+++++
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 108 KALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433
No 358
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.99 E-value=3.4e+02 Score=27.29 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHH--HHhhhhhH--HHHHHHHHHHHHHHhHHH
Q 006838 473 NLSVLEDYIKELNQ--RQQDVFPE--LDREITRISLLLEKSKLE 512 (629)
Q Consensus 473 N~Slle~YiEeln~--ry~~~f~~--l~~el~~~~~~Lek~~ae 512 (629)
|.-|=.+|-+++.. +++..-+. -.-.+..+..+|++++..
T Consensus 52 Ns~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~ 95 (161)
T TIGR02894 52 NAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTT 95 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhc
Confidence 45555667776552 12211110 112467777888887654
No 359
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.92 E-value=3.3e+02 Score=28.18 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 500 TRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 500 ~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
..+...+||.++...+=.++.+.+++++
T Consensus 98 ~tl~e~~en~K~~~e~tEer~~el~kkl 125 (203)
T KOG3433|consen 98 ATLGESIENRKAGREETEERTDELTKKL 125 (203)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3344455555555555555555555444
No 360
>PRK06798 fliD flagellar capping protein; Validated
Probab=32.76 E-value=1.1e+02 Score=34.49 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKL 511 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~a 511 (629)
.+.|-.+++.|+--+.-+++.+|....||.+.|..||.-+++...+...+.+
T Consensus 381 ~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~ 432 (440)
T PRK06798 381 SKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAALDSQLKTIKA 432 (440)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777777777777777777766666666655543
No 361
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.64 E-value=1.1e+03 Score=29.85 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhH-------HHHHHHHHHHHHHHh
Q 006838 476 VLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESW-------KTVVSFRVNELIKEN 548 (629)
Q Consensus 476 lle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~sw-------ks~VSsqLd~l~reN 548 (629)
+=.+.++|.-++..+...+|+++|.+ .|-+.++.++||+....++.|+..= |-+.+-+.|-|+.|.
T Consensus 262 iqleqlqEfkSkim~qqa~Lqrel~r-------aR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~ev 334 (1243)
T KOG0971|consen 262 IQLEQLQEFKSKIMEQQADLQRELKR-------ARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEV 334 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33445556666666666666665543 4566778888888887777665432 344567778888888
Q ss_pred hHHHHHHHHHHhhh----hhhcccchhH
Q 006838 549 SMLRIDVEKVSSDQ----ANLESKELAV 572 (629)
Q Consensus 549 ~~LR~~Ve~v~~~q----~~mEnK~laV 572 (629)
.++..+|+.+.-+. +.||+|+=.+
T Consensus 335 e~lkEr~deletdlEILKaEmeekG~~~ 362 (1243)
T KOG0971|consen 335 EALKERVDELETDLEILKAEMEEKGSDG 362 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 87777776665443 4678886655
No 362
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=32.62 E-value=6e+02 Score=27.67 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHH
Q 006838 478 EDYIKELNQRQQDVF---PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRID 554 (629)
Q Consensus 478 e~YiEeln~ry~~~f---~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~ 554 (629)
-.-+.|+..+|..+| .-||++=+...=.++.+|..|.++.|.=-+..+++.+- ...++.+.+....|+.+
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK-------~~elEr~K~~~d~L~~e 155 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREK-------IRELERQKRAHDSLREE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 556677788888887 66788877777788888888888877443444443211 22344445555555555
Q ss_pred HHHHHhhh
Q 006838 555 VEKVSSDQ 562 (629)
Q Consensus 555 Ve~v~~~q 562 (629)
+..+++.+
T Consensus 156 ~~~Lre~L 163 (302)
T PF09738_consen 156 LDELREQL 163 (302)
T ss_pred HHHHHHHH
Confidence 55555444
No 363
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=32.55 E-value=6.4e+02 Score=27.80 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHH-H---HHHHhhhhhHHHHHHHHHHHHHHHhHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKE-L---NQRQQDVFPELDREITRISLLLEKSKLE 512 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEe-l---n~ry~~~f~~l~~el~~~~~~Lek~~ae 512 (629)
+.+=.-|+.||.+|=...--++.-+|. + =.+....+.+|+++.......|+.++.+
T Consensus 105 E~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~E 164 (310)
T PF09755_consen 105 EFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRRE 164 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 466677888888776666666665553 1 1244445556666665555556665444
No 364
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.38 E-value=7.2e+02 Score=30.18 Aligned_cols=11 Identities=9% Similarity=0.453 Sum_probs=4.2
Q ss_pred HHhhhhhHHHH
Q 006838 487 RQQDVFPELDR 497 (629)
Q Consensus 487 ry~~~f~~l~~ 497 (629)
.....+.+|++
T Consensus 517 ~~~~li~~l~~ 527 (782)
T PRK00409 517 KLNELIASLEE 527 (782)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 365
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=32.38 E-value=6e+02 Score=26.48 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=26.2
Q ss_pred HHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 518 KWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 518 e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
+-|..++.++.+...=...+....+.-..+...|+.++..++..+.....+.
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556555555555555555566666666666666666554433333
No 366
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=32.35 E-value=6e+02 Score=26.53 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006838 459 VLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVK 518 (629)
Q Consensus 459 VlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e 518 (629)
|=+.|.++|=.=|.+.-+.+.|.+.....+...-..++.++.+....+..+++++..+++
T Consensus 97 Is~pl~l~iF~~eI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 156 (301)
T PF14362_consen 97 ISEPLELKIFEKEIDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEK 156 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 335566777777778888888887777777666665555665555555555555554443
No 367
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=32.08 E-value=1.8e+02 Score=30.94 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhchhh
Q 006838 514 EELVKWRETMERGLSDL 530 (629)
Q Consensus 514 ~~L~e~K~~~ek~~~~l 530 (629)
.+|+++|+..-++|+++
T Consensus 194 n~L~DqRD~ll~~LS~~ 210 (322)
T TIGR02492 194 NDLLDQRDLLLKELSQL 210 (322)
T ss_pred hHhHHHHHHHHHHHHhH
Confidence 35666666666555554
No 368
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=32.04 E-value=2.9e+02 Score=26.36 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLEL 513 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI 513 (629)
|.++|+.|..-+.-+|+=-..--..--..+.++.++...+...+..++++|
T Consensus 13 l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dV 63 (112)
T PF07439_consen 13 LNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADV 63 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 444444444444433333333222222333344444444433333333333
No 369
>PF13166 AAA_13: AAA domain
Probab=32.01 E-value=5.5e+02 Score=29.76 Aligned_cols=110 Identities=18% Similarity=0.338 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHhhhchhhhhHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVK--WRETMERGLSDLESWK 534 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e--~K~~~ek~~~~l~swk 534 (629)
+.+.+.|.+|++.......+ +.+.+.+ ..+.+++..+...+......+.+.+.++.++.+ |+..+++-..++....
T Consensus 339 ~~l~~~L~~K~~~~~~~~~~-~~~~~~~-~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 416 (712)
T PF13166_consen 339 EELKKALEKKIKNPSSPIEL-EEINEDI-DELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQ 416 (712)
T ss_pred HHHHHHHHHHHhcccccccc-cchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH---HHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 535 TVVSF---RVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 535 s~VSs---qLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
..+.. +++.+......+...+.....++..++.+
T Consensus 417 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 417 KEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 370
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.77 E-value=2.4e+02 Score=28.97 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 498 EITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 498 el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
++..++.-+....+.++.|++-=.-|+-|+..| .+.++ +++++.+-..|+.+|...+++..+..
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L---~s~Lt--~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKEL---SSALT--TEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544555444333 33333 46777777777777777777665544
No 371
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.74 E-value=4.3e+02 Score=24.60 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
..+..++..+.+....++..++++..+
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 111 EKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555543
No 372
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=31.71 E-value=5.9e+02 Score=31.81 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006838 474 LSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVK 518 (629)
Q Consensus 474 ~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e 518 (629)
+-.+.+-|+|--+.+.+.=.-|.+++++...++...+.+|.++++
T Consensus 261 lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 261 LQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334445555555555555555555443
No 373
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=31.68 E-value=1.5e+02 Score=31.83 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 537 VSFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
...-++.|..|...-...++.+.+...++
T Consensus 282 A~~Li~~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 282 AEKLISGLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred HHHHHhhhcchhhhHHHHHHHHHHHhccc
Confidence 33444455555555555555555555554
No 374
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=31.67 E-value=7.2e+02 Score=31.55 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=64.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHH
Q 006838 464 MQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNE 543 (629)
Q Consensus 464 mqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~ 543 (629)
.++++++=-+.+-..|=+|+--+.+..-+...++.+..+-.-...++.++.+.+++++.++....++..-+..+-.++.+
T Consensus 638 ~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qkee~~~~~~~ 717 (1072)
T KOG0979|consen 638 IQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQEEEYAASEAK 717 (1072)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666666677666676666666666666666666677788888888888888777787778888888888
Q ss_pred HHHHhhHHHHHH
Q 006838 544 LIKENSMLRIDV 555 (629)
Q Consensus 544 l~reN~~LR~~V 555 (629)
+..++.-+|..-
T Consensus 718 ~I~~~~~~~~~~ 729 (1072)
T KOG0979|consen 718 KILDTEDMRIQS 729 (1072)
T ss_pred HHHhHHHHHHHH
Confidence 888877776543
No 375
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.54 E-value=4.8e+02 Score=25.12 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=18.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 006838 464 MQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKS 509 (629)
Q Consensus 464 mqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~ 509 (629)
-.++|.||.-..-.+.=|..|.++. .-++.++.++...|...
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~----~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKN----QQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3445555554444444444444444 33444444444444333
No 376
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=31.48 E-value=2.5e+02 Score=31.31 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQ 486 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ 486 (629)
..-++.|.+.++.+...+.-+++.++.+..
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345677888888888888888888887776
No 377
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=31.47 E-value=2.7e+02 Score=30.42 Aligned_cols=7 Identities=14% Similarity=0.961 Sum_probs=3.1
Q ss_pred hhHHHHH
Q 006838 531 ESWKTVV 537 (629)
Q Consensus 531 ~swks~V 537 (629)
+.|+..+
T Consensus 353 ~~~~~~L 359 (388)
T PF04912_consen 353 KKWEELL 359 (388)
T ss_pred HHHHHHH
Confidence 4444443
No 378
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=31.42 E-value=3.6e+02 Score=23.59 Aligned_cols=70 Identities=11% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 492 FPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 492 f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
++++-.+...+..-|..++..|..|.......--.......++..+....++..+-...++..|..+...
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~ 72 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKE 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 379
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=31.38 E-value=4.3e+02 Score=24.49 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 006838 476 VLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDV 555 (629)
Q Consensus 476 lle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~V 555 (629)
.|.+.++.......+...+||++=+--...-...=++|-.|++-|-.+.=++ ...+..+.-|.+.-......|++-|
T Consensus 3 ~Lr~~v~~er~~~~~L~~ELEeER~AaAsAA~EAMaMI~RLQ~EKAa~~mEA---~Qy~Rm~EEk~~yD~e~ie~L~~~l 79 (94)
T PF04576_consen 3 RLRRAVEAERKALAALYAELEEERSAAASAASEAMAMILRLQEEKAAVEMEA---RQYQRMAEEKAEYDQEAIESLKDIL 79 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4667788888889999999999777766666665599999999888887445 5567889999999888888888888
Q ss_pred HHHHhhhhhhcc
Q 006838 556 EKVSSDQANLES 567 (629)
Q Consensus 556 e~v~~~q~~mEn 567 (629)
-+...+...++.
T Consensus 80 ~~rE~e~~~Le~ 91 (94)
T PF04576_consen 80 YKREKEIQSLEA 91 (94)
T ss_pred HHHHHHHHHHHh
Confidence 777766666553
No 380
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=31.34 E-value=1.4e+02 Score=34.64 Aligned_cols=15 Identities=13% Similarity=0.547 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhhhhh
Q 006838 551 LRIDVEKVSSDQANL 565 (629)
Q Consensus 551 LR~~Ve~v~~~q~~m 565 (629)
++.++++++++.+.+
T Consensus 220 l~~~l~~l~~~~~~~ 234 (646)
T PRK05771 220 IKEELEEIEKERESL 234 (646)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 381
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=31.32 E-value=6.5e+02 Score=26.56 Aligned_cols=96 Identities=21% Similarity=0.269 Sum_probs=54.9
Q ss_pred chhHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHhhh-
Q 006838 456 GDTVLRILMQKV-KSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWR-------ETMERG- 526 (629)
Q Consensus 456 gdSVlKiLmqKv-ksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K-------~~~ek~- 526 (629)
.+.|.|-=|+++ .+++++++-+-.|++.+... -|..++.+-.++-.-||++|..|++....= =+.||+
T Consensus 84 k~~vtkaqq~~v~~QQ~~~f~kiRsel~S~e~s---EF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkgr 160 (220)
T KOG3156|consen 84 KELVTKAQQEKVSYQQKVDFAKIRSELVSIERS---EFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKGR 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhhcc
Confidence 366666666665 46778888887777665443 356666666666666777766666544310 011111
Q ss_pred ------chhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006838 527 ------LSDLESWKTVVSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 527 ------~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
..+++.- -+| ..+.+|...||-.++-+.
T Consensus 161 ~~d~~~~~~l~~~--e~s---~kId~Ev~~lk~qi~s~K 194 (220)
T KOG3156|consen 161 IKDESSSHDLQIK--EIS---TKIDQEVTNLKTQIESVK 194 (220)
T ss_pred ccchhhhcchhHh--HHH---HHHHHHHHHHHHHHHHHH
Confidence 1111111 223 556678888888887665
No 382
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.22 E-value=8.8e+02 Score=29.60 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHhhhchhhhh
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL-------VKWRETMERGLSDLES 532 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L-------~e~K~~~ek~~~~l~s 532 (629)
+++|..|.+.......-|..=++.|...|...-..+..+..+...-+++++..+..+ ++.-..+++++..+..
T Consensus 354 ~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~ 433 (717)
T PF09730_consen 354 LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSK 433 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 456666666666655555555555555554443333333333333333332222222 2233344444433322
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006838 533 WKTVVSFRVNELIKENSMLRIDVEKV 558 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR~~Ve~v 558 (629)
--..-.++|...+-+...+..++.++
T Consensus 434 ~A~E~q~~LnsAQDELvtfSEeLAqL 459 (717)
T PF09730_consen 434 LAGESQGSLNSAQDELVTFSEELAQL 459 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222344555555555555444433
No 383
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=31.22 E-value=4.8e+02 Score=31.90 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 539 FRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 539 sqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
..+.....+...-+.+|+++...+..+|+
T Consensus 555 ~ev~~~~ee~~kaq~EVERLl~~L~~~E~ 583 (775)
T PF10174_consen 555 QEVTRYREESEKAQAEVERLLDILREAEN 583 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444556667777766655554
No 384
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=31.16 E-value=81 Score=35.28 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=54.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhhHH--------------HHHHHHHHHHHHHhHHHHHHH-----HH------H
Q 006838 465 QKVKSLEQNLSVLEDYIKELNQRQQDVFPEL--------------DREITRISLLLEKSKLELEEL-----VK------W 519 (629)
Q Consensus 465 qKvksLE~N~Slle~YiEeln~ry~~~f~~l--------------~~el~~~~~~Lek~~aeI~~L-----~e------~ 519 (629)
..+|-.|....-|+-.+|+-..|...+--.| -....+++..|+|-+++.+.+ -| -
T Consensus 160 ~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqt 239 (561)
T KOG1103|consen 160 EEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQT 239 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccch
Confidence 3445556666666666666655554433221 112334455555533221111 11 2
Q ss_pred HHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 520 RETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 520 K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
.-+++|-++++.-=+..+-.+|+...+-.-+|+.+++-+++.+.++|
T Consensus 240 eaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlE 286 (561)
T KOG1103|consen 240 EAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLE 286 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 23566666666655666666666666666666777766666666655
No 385
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.10 E-value=3.3e+02 Score=24.29 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=34.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 527 LSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 527 ~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
+.+++.=+..++....++++-+.+|+.+-+++.+++..-+-+
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778888888888999999999999999888765544
No 386
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=31.10 E-value=2.7e+02 Score=27.81 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 497 REITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 497 ~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
..+.-+...++.+...|.+|.+..+..+.+ .|+=||=+=.||+..|..++.++...++-+|.
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~---------vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADD---------VVSYQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555556666677776666555533 35667777777777777777777666655554
No 387
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=30.93 E-value=7.5e+02 Score=27.19 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=52.9
Q ss_pred CchhHHHHHHHHHHHHhhhhhHHHHHHHHHH-------HHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHH
Q 006838 455 PGDTVLRILMQKVKSLEQNLSVLEDYIKELN-------QRQQDVFPELDREITRISLLLEKSKLELEELV----KWRETM 523 (629)
Q Consensus 455 ~gdSVlKiLmqKvksLE~N~Slle~YiEeln-------~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~----e~K~~~ 523 (629)
++-.-+..|-+|+|.||-.-..|..=.-.|. ......+.|.=++|+.....+..+..+|..-. .+++.+
T Consensus 157 ~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEI 236 (306)
T PF04849_consen 157 QKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEI 236 (306)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688999999999875444332111111 11122233333344444443333333322221 233333
Q ss_pred hhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 524 ERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 524 ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
.. +.+=-...+.++..+.-||..|+..+...++.|..|.
T Consensus 237 t~----LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~ 275 (306)
T PF04849_consen 237 TS----LLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQ 275 (306)
T ss_pred HH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 32 2222234456666667777777777776666665543
No 388
>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy.
Probab=30.92 E-value=9.4e+02 Score=28.34 Aligned_cols=11 Identities=27% Similarity=0.274 Sum_probs=7.1
Q ss_pred CccCChhhhhh
Q 006838 183 HTYLNFDEFRN 193 (629)
Q Consensus 183 ~~~~~~de~k~ 193 (629)
++.++++||..
T Consensus 93 Ai~LsiCEle~ 103 (544)
T PF04163_consen 93 AIKLSICELEN 103 (544)
T ss_pred HHHHHhhhccc
Confidence 56677777744
No 389
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=30.90 E-value=3.5e+02 Score=31.09 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHH
Q 006838 459 VLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVS 538 (629)
Q Consensus 459 VlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VS 538 (629)
||-+|+.||.-++-.---.++-=--.++-|++. -|--.+-++..-|+..+.++..|++ .+.+-.+|.. --..++
T Consensus 377 vF~fiNekl~g~~~~~~~~~rkkt~e~ag~s~K--tl~~~lv~~edeirrlkrdm~klkq---~l~RN~gd~v-~s~~lq 450 (486)
T KOG2185|consen 377 VFSFINEKLFGTRHEKVHSERKKTRENAGPSDK--TLGAALVEYEDEIRRLKRDMLKLKQ---MLNRNKGDLV-VSEALQ 450 (486)
T ss_pred HHHHHHHHhcccccccccchhhhhhhhcCcchh--hhhhHHHHHHHHHHHHHHHHHHHHH---HHhhccccHH-HHHHHH
Confidence 999999999876554433333311111222221 1222223333333444444444432 2333333332 234567
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 539 FRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 539 sqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
.+|....+..+-|+..-..++++|.+.++
T Consensus 451 e~L~ev~~~Lasl~aqea~ls~eq~sr~s 479 (486)
T KOG2185|consen 451 ERLKEVRKALASLLAQEAALSNEQVSRES 479 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Confidence 78888888889999888999999988887
No 390
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.87 E-value=2.1e+02 Score=33.86 Aligned_cols=56 Identities=7% Similarity=-0.000 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH----hhhhhhccc--chhHHHHHHHHHHHHHHHHHHHH
Q 006838 536 VVSFRVNELIKENSMLRIDVEKVS----SDQANLESK--ELAVLSVSLFFACFAIFKLVSAR 591 (629)
Q Consensus 536 ~VSsqLd~l~reN~~LR~~Ve~v~----~~q~~mEnK--~laVl~isl~f~~la~~~l~~~~ 591 (629)
.+--++++|+.-..-+|-++.+-+ ..|+.++.+ ++---....|=..|+-+-+-++.
T Consensus 666 ~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~ 727 (741)
T KOG4460|consen 666 LIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIRE 727 (741)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 345566777776666776666622 122223322 22234455555556555544443
No 391
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=30.78 E-value=3.6e+02 Score=25.90 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=6.2
Q ss_pred HHHHHHHHhhhchhh
Q 006838 516 LVKWRETMERGLSDL 530 (629)
Q Consensus 516 L~e~K~~~ek~~~~l 530 (629)
+.++|..++|.++.+
T Consensus 72 ~~erqk~~~k~ae~L 86 (131)
T PF10158_consen 72 MVERQKRFAKFAEQL 86 (131)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 392
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=30.67 E-value=5.2e+02 Score=25.30 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=12.8
Q ss_pred HHHHHhhHHHHHHHHHHhhh
Q 006838 543 ELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 543 ~l~reN~~LR~~Ve~v~~~q 562 (629)
.+..+...||.++|.++-+.
T Consensus 135 ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 135 KIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555667788887776544
No 393
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=30.59 E-value=3.6e+02 Score=28.21 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=50.3
Q ss_pred CchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 455 PGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 455 ~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
+.+.||+-|...-=.--+-..++|-+.-|...|. .-|+....+.+..+++++...+.. +|+.+.+|+.|+.
T Consensus 208 ~~~~vl~~l~~~yl~~~l~~al~es~asE~aaR~----~AM~~At~Na~e~i~~L~~~~Nr~--RQ~~IT~El~EIv 278 (284)
T PRK05621 208 DAEEILDALLPRYVESQIYQALLENKASEQAARM----TAMKNATDNAGDLIKKLTLVYNRA--RQAAITQEITEIV 278 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3477888877766544455555555555555554 778888888888998887777665 7778998887774
No 394
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=30.48 E-value=9.1e+02 Score=29.12 Aligned_cols=93 Identities=24% Similarity=0.304 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHhhhchhhhhHH
Q 006838 459 VLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEK----SKLELEELVKWRETMERGLSDLESWK 534 (629)
Q Consensus 459 VlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek----~~aeI~~L~e~K~~~ek~~~~l~swk 534 (629)
=|--|-.||+=|+.++-.|=.=|++++.|=..+|+..-++|...-..|++ +..|++.| .+|+.|= -|-
T Consensus 200 ~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~L-------K~ELied-RW~ 271 (683)
T PF08580_consen 200 SLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESL-------KKELIED-RWN 271 (683)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhh-hHH
Confidence 45667789999999999999999999999999998877777666555544 45555544 3344443 376
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
.....-.++++.....+-..+.+++
T Consensus 272 ~vFr~l~~q~~~m~esver~~~kl~ 296 (683)
T PF08580_consen 272 IVFRNLGRQAQKMCESVERSLSKLQ 296 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6554433444433333333333333
No 395
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=30.37 E-value=7e+02 Score=27.52 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=31.8
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHH--------HHHHhhHHH--HHHHHHHhhhhhhcccch
Q 006838 505 LLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNE--------LIKENSMLR--IDVEKVSSDQANLESKEL 570 (629)
Q Consensus 505 ~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~--------l~reN~~LR--~~Ve~v~~~q~~mEnK~l 570 (629)
.|.++..+|.++...-+.+++.+.+-..=-+.+.++|+. +-||....+ .||.++++-+..|+.|.-
T Consensus 266 ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~ 341 (384)
T PF03148_consen 266 QLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLD 341 (384)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444344455566653 445544333 366666666666665544
No 396
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=30.29 E-value=3.8e+02 Score=30.81 Aligned_cols=57 Identities=11% Similarity=0.233 Sum_probs=33.5
Q ss_pred HHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHH---hhHHHHHHHHHHhhh
Q 006838 506 LEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKE---NSMLRIDVEKVSSDQ 562 (629)
Q Consensus 506 Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~re---N~~LR~~Ve~v~~~q 562 (629)
|+.+..++..+...+..+-..+.++..++..+..+|+.+... ...|..++++++++.
T Consensus 303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l 362 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEEL 362 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 444455555555555556567777777888777777766543 444444444444333
No 397
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=30.23 E-value=2.6e+02 Score=28.80 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=41.0
Q ss_pred HHHHhhhhhHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 485 NQRQQDVFPELD--REITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 485 n~ry~~~f~~l~--~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
.....+..+.++ .++++....||+.+++++.+.+.|+.+... =+.++.+|.+..
T Consensus 73 ~~~q~e~~~~lk~~a~~~E~lk~lE~~kae~k~~~e~re~~l~~------------------------~qae~~klv~iY 128 (192)
T COG3334 73 YALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREGILRS------------------------KQAEDGKLVKIY 128 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHhhhhHHHHHH
Confidence 334444555555 466666777788888888888888777611 122566666666
Q ss_pred hhhcccchhH
Q 006838 563 ANLESKELAV 572 (629)
Q Consensus 563 ~~mEnK~laV 572 (629)
+.|..+..|.
T Consensus 129 ~~Mkp~~aA~ 138 (192)
T COG3334 129 SKMKPDAAAA 138 (192)
T ss_pred HcCChhhHHH
Confidence 7777666544
No 398
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=30.16 E-value=6.3e+02 Score=26.07 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
--|+.||+.+..=+..|..++.-+..+|.++|
T Consensus 159 ~N~~~QLe~~~~vl~smS~~L~~L~~Rq~~le 190 (190)
T PF09074_consen 159 FNVSCQLEDMNEVLGSMSKDLQNLSDRQTQLE 190 (190)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhccC
Confidence 35677888888888888888877777777654
No 399
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=30.06 E-value=5.1e+02 Score=27.73 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=21.2
Q ss_pred HHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006838 478 EDYIKELNQRQ-QDVFPELDREITRISLLLEKSKLELEELVK 518 (629)
Q Consensus 478 e~YiEeln~ry-~~~f~~l~~el~~~~~~Lek~~aeI~~L~e 518 (629)
+.|+..++.+- .++..-+++++.+....|++....|.+.++
T Consensus 157 ~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 157 ERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544333 234455555666666556555555555544
No 400
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=29.93 E-value=6.1e+02 Score=29.83 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 006838 536 VVSFRVNELIKENSMLRIDVEK 557 (629)
Q Consensus 536 ~VSsqLd~l~reN~~LR~~Ve~ 557 (629)
.|++......+|..++|.++..
T Consensus 445 kIdtE~k~R~~eV~~vRqELa~ 466 (531)
T PF15450_consen 445 KIDTEGKAREREVGAVRQELAT 466 (531)
T ss_pred hccHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666655
No 401
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.50 E-value=6.4e+02 Score=32.05 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHH---HHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTV---VSFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~---VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
.+++.++.+....++++...|. +.+..|+.=..++-+-|.. .......|-|+-.+||+.++.+.+++..-++-.
T Consensus 421 ~~~e~~l~~~~e~i~~l~~si~---e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 421 EDLESELKEKLEEIKELESSIN---ETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNL 497 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455544444444444444 4444454433344444433 345566778888888888888888877666655
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 006838 570 LAVLSVSLFFACFAIFKLVSAR 591 (629)
Q Consensus 570 laVl~isl~f~~la~~~l~~~~ 591 (629)
-+.-.-++.-|+-++=++..+.
T Consensus 498 ~~~~~r~v~nGi~~v~~I~e~~ 519 (1200)
T KOG0964|consen 498 RATMNRSVANGIDSVRKIKEEL 519 (1200)
T ss_pred HHhccchhhhhhHHHHHHHHHh
Confidence 5666666666666666655554
No 402
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=29.44 E-value=5.4e+02 Score=25.01 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry 488 (629)
...+-+.++|..||-.+.-+..-..+-+...
T Consensus 29 k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v 59 (146)
T PF08702_consen 29 KYERDVDKDIQELENLLDQISNSTSEAFEYV 59 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3344555666666555544444444443333
No 403
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=29.30 E-value=4.9e+02 Score=26.81 Aligned_cols=23 Identities=4% Similarity=0.264 Sum_probs=8.4
Q ss_pred HHhhhchhhhhHHHHHHHHHHHH
Q 006838 522 TMERGLSDLESWKTVVSFRVNEL 544 (629)
Q Consensus 522 ~~ek~~~~l~swks~VSsqLd~l 544 (629)
...+++..+++=-.++..++|.+
T Consensus 111 ~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 111 ALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 404
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=29.27 E-value=1.9e+02 Score=27.40 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.8
Q ss_pred HhhHHHHHHHHHHhhhhhhcccc
Q 006838 547 ENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 547 eN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
++..|+.+|+.+++.++.+|||.
T Consensus 84 ~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 84 EMDELTERVDALERQVADLENKL 106 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999874
No 405
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=29.08 E-value=4.6e+02 Score=24.09 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhhchhhhhHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLL--LEKSKLELEELVKWRETMERGLSDLESWK 534 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~--Lek~~aeI~~L~e~K~~~ek~~~~l~swk 534 (629)
+.+-..+..|.+.|+.-+.....|-+-+. ...-+.+.+..+...... +..+...+.++.+.++.++..-..++...
T Consensus 89 ~~l~~~~~~r~~~L~~~~~~~~~~~~~~~--l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 166 (213)
T cd00176 89 EELRELAEERRQRLEEALDLQQFFRDADD--LEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLN 166 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Q ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHhhhhhhcc
Q 006838 535 TVVSFRVNELIKEN-SMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 535 s~VSsqLd~l~reN-~~LR~~Ve~v~~~q~~mEn 567 (629)
.....-+....... ..++.+++.+...-..+.+
T Consensus 167 ~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 200 (213)
T cd00176 167 ELAEELLEEGHPDADEEIEEKLEELNERWEELLE 200 (213)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
No 406
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=28.97 E-value=4.2e+02 Score=28.28 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHH
Q 006838 474 LSVLEDYIKELNQRQQDVFPEL-DREITRISLLLEKSK-LELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSML 551 (629)
Q Consensus 474 ~Slle~YiEeln~ry~~~f~~l-~~el~~~~~~Lek~~-aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~L 551 (629)
+|++.-|+= .-++|+.++.+. ++++.++..+++..| ++|+.++|..|...+.= |-..+---|=+..|||.+|
T Consensus 102 ~s~lgl~~~-~~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq-----~~~~~~~~lfd~~keni~l 175 (247)
T KOG3976|consen 102 LSFLGLTGL-AIKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQ-----ALASKTEYLFDVSKENIAL 175 (247)
T ss_pred hHHHHHHHH-HHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhH-----HHHHHHHhhhhhhhHHHHH
Confidence 344444442 356778777664 669999999999864 55999988887666332 3222233445666777776
Q ss_pred HHHH
Q 006838 552 RIDV 555 (629)
Q Consensus 552 R~~V 555 (629)
-.|+
T Consensus 176 ~lE~ 179 (247)
T KOG3976|consen 176 QLEA 179 (247)
T ss_pred HHHH
Confidence 5554
No 407
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.92 E-value=2.6e+02 Score=34.69 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKS 509 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~ 509 (629)
=.||+++||.-.+.|+.|+.++-... +.++..+....++...+..+
T Consensus 546 r~qklk~le~q~s~lkk~l~~~~~l~-~~~~~~~~~~~kl~~ei~~~ 591 (913)
T KOG0244|consen 546 RVQKLKSLETQISLLKKKLSSQRKLI-KPKPKSEGIRAKLLQEIHIA 591 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHh-ccchhhHHHHHHHHHHHHHH
Confidence 35788999999999999998876544 33333333334433333333
No 408
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=28.82 E-value=3.4e+02 Score=29.25 Aligned_cols=36 Identities=8% Similarity=0.239 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 481 IKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 481 iEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
|.+...+.+..+-++-........-++..|..++.+
T Consensus 98 l~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~I 133 (271)
T PF13805_consen 98 LSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSI 133 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555444444444455554444444
No 409
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.82 E-value=6.6e+02 Score=25.90 Aligned_cols=61 Identities=26% Similarity=0.286 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETM 523 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ 523 (629)
..|..|+++|-...|-.+-=|++|++-+ ..++|++++.++...+.+++..|+++.+-..++
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~s~L--t~eemQe~i~~L~kev~~~~erl~~~k~g~~~v 149 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELSSAL--TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHV 149 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4688899999999999999999999877 468999999999999999988888887744333
No 410
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=28.72 E-value=1.9e+02 Score=32.29 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=11.0
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 543 ELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 543 ~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
.+..+...|+.++..+.+++..+|.
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~ 94 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEA 94 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 411
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=28.32 E-value=7.6e+02 Score=27.54 Aligned_cols=81 Identities=12% Similarity=0.238 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHH
Q 006838 477 LEDYIKELNQRQQ--DVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRID 554 (629)
Q Consensus 477 le~YiEeln~ry~--~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~ 554 (629)
+..|.+.+-+|+. ..+++++++|+....+++.+...+- ..-|+..- +.+ ..+...||.--++...+-.+
T Consensus 199 l~~~~~~id~H~~lr~~~~~~~~~L~~~a~QfRaIQrrlL--~r~kd~~p---~~l----~~L~~LLe~ty~~l~~~~d~ 269 (377)
T PF14728_consen 199 LQEYFEIIDQHFELRQELKELEEELDERAQQFRAIQRRLL--TRFKDKNP---APL----DNLDTLLEGTYRQLIALADE 269 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCC---cch----hHHHHHHHHHHHHHHHHHHH
Confidence 6677777766653 3345666666666666666644421 11232222 222 45666777777777777777
Q ss_pred HHHHHhhhhhhc
Q 006838 555 VEKVSSDQANLE 566 (629)
Q Consensus 555 Ve~v~~~q~~mE 566 (629)
+++.+.++..-.
T Consensus 270 ~~~~~~~l~~a~ 281 (377)
T PF14728_consen 270 IEELQANLKRAG 281 (377)
T ss_pred HHHHHHHHHHHh
Confidence 877776664333
No 412
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.27 E-value=4.1e+02 Score=28.42 Aligned_cols=68 Identities=31% Similarity=0.271 Sum_probs=35.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHH-------HHHHHHhhhhhhccc
Q 006838 501 RISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRI-------DVEKVSSDQANLESK 568 (629)
Q Consensus 501 ~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~-------~Ve~v~~~q~~mEnK 568 (629)
.+-..++.+|..+.++++-|+..-+++.++++=--.+.-+|..|..+|+.|-. +|.+++.+-..+|.+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 33334444444455555555555555555544444455555555555555433 455555555556655
No 413
>PRK08724 fliD flagellar capping protein; Validated
Probab=28.24 E-value=1.7e+02 Score=35.03 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRI 502 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~ 502 (629)
|.++++.|+-.+.-+++.++.+..||.+.|..||.-+++.
T Consensus 622 L~~~i~~l~dqi~~Le~Rle~~E~Ry~~QFtAMD~~msqM 661 (673)
T PRK08724 622 LREQNYRLNDDQVALDRRMESLEKRTHAKFAAMQDATGKM 661 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555444443
No 414
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.20 E-value=2.5e+02 Score=33.13 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=21.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 006838 504 LLLEKSKLELEELVKWRETMERGLSDLESWKTVV 537 (629)
Q Consensus 504 ~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~V 537 (629)
.....|-.-|+++..+|+.++|=+.|.+.....+
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444557777778888888887775444444
No 415
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=28.16 E-value=4.6e+02 Score=26.97 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=15.6
Q ss_pred HhhHHHHHHHHHHhhhhhhcccc
Q 006838 547 ENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 547 eN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
-+-.+..+|.+|..++..++.|-
T Consensus 108 q~~~~~~~v~~~~q~~~~l~~K~ 130 (189)
T TIGR02132 108 QAPALKKDVTKLKQDIKSLDKKL 130 (189)
T ss_pred hCchHHhHHHHHHHHHHHHHHHH
Confidence 34566677777777777777763
No 416
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=28.15 E-value=6.7e+02 Score=28.03 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=5.8
Q ss_pred HHHHHHhhhhhHHH
Q 006838 465 QKVKSLEQNLSVLE 478 (629)
Q Consensus 465 qKvksLE~N~Slle 478 (629)
++++.|+...-.+.
T Consensus 7 ~~~~~~~~~~~~~~ 20 (364)
T TIGR00020 7 NRIEDLTSRLDTVR 20 (364)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 417
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=28.12 E-value=1e+03 Score=28.19 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
..+.+.+++.-..|+..+++++.+
T Consensus 344 ~~~~~~a~~~~~~L~~~l~~~~~~ 367 (754)
T TIGR01005 344 LMQADAAQARESQLVSDVNQLKAA 367 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 418
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=28.01 E-value=1.1e+03 Score=30.17 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHh
Q 006838 458 TVLRILMQKVKSLE 471 (629)
Q Consensus 458 SVlKiLmqKvksLE 471 (629)
-++|-||.-...|+
T Consensus 436 d~~K~L~~E~ekl~ 449 (1195)
T KOG4643|consen 436 DLEKKLQFELEKLL 449 (1195)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444333333
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.94 E-value=9e+02 Score=29.41 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 480 YIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 480 YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
++.+........+.+|+++..+.....+.+....+++.+.++.++++..+++
T Consensus 505 ~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 505 FYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555554444444444444444444444444444444433
No 420
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.90 E-value=9.7e+02 Score=29.24 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=14.6
Q ss_pred EEEEEEEeeccCCcceeee
Q 006838 332 RYLKLNLLSHYGSEFYCTL 350 (629)
Q Consensus 332 RYLKle~LSHyGsE~YC~L 350 (629)
-+|.|.|- +.|..|-|.=
T Consensus 72 ~~V~l~F~-~~g~~Y~i~R 89 (908)
T COG0419 72 ASVELEFE-VNGKKYRIER 89 (908)
T ss_pred EEEEEEEE-ECCEEEEEEe
Confidence 68888888 8888888853
No 421
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=27.87 E-value=1.3e+03 Score=29.09 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH------------HHHHHHH
Q 006838 459 VLRILMQKVKSLEQNLSVLEDYIK---ELNQRQQDVFPELDREITRISLLLEKSKLELEEL------------VKWRETM 523 (629)
Q Consensus 459 VlKiLmqKvksLE~N~Slle~YiE---eln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L------------~e~K~~~ 523 (629)
+..-|-+|+.++|..-.....-+. .+-..|...+..|..-.......|..+.-+|.++ ..+||..
T Consensus 985 LnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDEL 1064 (1480)
T COG3096 985 LNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDEL 1064 (1480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHH
Confidence 445677788788777666544332 2333455566666665555555555555555443 2377778
Q ss_pred hhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 524 ERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 524 ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
-..++.-++-++.|..||.-..-|+.+|-.++.++.++-.++
T Consensus 1065 h~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~ 1106 (1480)
T COG3096 1065 HAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEM 1106 (1480)
T ss_pred HHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 788888999999999999999999999988998888777554
No 422
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.71 E-value=3.9e+02 Score=22.80 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 531 ESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 531 ~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
++=-...+++|++...-|..|..+|+.++++...+
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334456666666666666666666666655444
No 423
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=27.49 E-value=5.9e+02 Score=28.40 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006838 495 LDREITRISLLLEKSKLELEELVKWR 520 (629)
Q Consensus 495 l~~el~~~~~~Lek~~aeI~~L~e~K 520 (629)
+..-+..+...++++..++.++..|+
T Consensus 140 ~~~~~~~~~~~~~~v~~~l~~l~~~~ 165 (406)
T PF04906_consen 140 LLQALQFLQQQAENVVQQLDELPFWR 165 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 33344444444444444444444443
No 424
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=27.34 E-value=2.2e+02 Score=30.04 Aligned_cols=27 Identities=48% Similarity=0.620 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 539 FRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 539 sqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
-+...|.+||..||.+|++++.+..++
T Consensus 222 ~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 222 HRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999998888766554
No 425
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=27.28 E-value=7.2e+02 Score=25.83 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=15.6
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhh
Q 006838 543 ELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 543 ~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
++..+-..+|.+++++.++.+.|
T Consensus 169 ~i~~na~~fkeQ~~kLa~NL~sL 191 (202)
T TIGR03513 169 EIAINSSSLKEEMEKMAANLTSL 191 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666788888888766554
No 426
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=27.06 E-value=6.2e+02 Score=28.98 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=58.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHH---HHHHH
Q 006838 482 KELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRI---DVEKV 558 (629)
Q Consensus 482 Eeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~---~Ve~v 558 (629)
.+-++.++..+.++..=-+.++..|+.+.+++..|...|...++.+..+. -- -+++.+....|. .++-|
T Consensus 69 ~dtt~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~---~P-----~~ia~eCL~~RekR~~~dlv 140 (421)
T KOG2685|consen 69 RDTTEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALA---LP-----LSIAEECLAHREKRQGIDLV 140 (421)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cc-----HHHHHHHHHHHhhcccchhh
Confidence 34556666666666666666666777777777777776666666553331 11 123334444333 34455
Q ss_pred HhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006838 559 SSDQANLESKELAVLSVSLFFACFAIFKLVSARLST 594 (629)
Q Consensus 559 ~~~q~~mEnK~laVl~isl~f~~la~~~l~~~~~~~ 594 (629)
+..+.+.--||+.+ |.+|...++.-++.+..
T Consensus 141 ~D~Ve~EL~kE~el-----i~~~q~ll~~~~~~a~~ 171 (421)
T KOG2685|consen 141 HDEVETELHKEVEL-----IENIQELLKKTLERAEE 171 (421)
T ss_pred ccccHHHHHhHHHH-----HHHHHHHHHHHHHHHHH
Confidence 55555555666553 56677777777777663
No 427
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=27.04 E-value=5.7e+02 Score=29.28 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006838 493 PELDREITRISLLLEKSKLELEELVKW 519 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~ 519 (629)
+.||.-|.+...-|..+-.||+.|+++
T Consensus 31 ~~le~~L~~Fq~~L~~iS~eI~~LQ~~ 57 (508)
T PF04129_consen 31 ESLEEMLSNFQNDLGSISSEIRSLQER 57 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444443
No 428
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=26.68 E-value=4e+02 Score=22.69 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 006838 539 FRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 539 sqLd~l~reN~~LR~~Ve~v~ 559 (629)
.+-.+|..+...|+.+++++|
T Consensus 39 ~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 39 KRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344555555566666666555
No 429
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.62 E-value=5e+02 Score=30.13 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 006838 467 VKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMER 525 (629)
Q Consensus 467 vksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek 525 (629)
+|.|...-.+-.+=|.-|--++ +++++++..+...=+.+++|-+.|+++..+++.
T Consensus 47 ~kalGiegDTP~DTlrTlva~~----k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 47 LKALGIEGDTPADTLRTLVAEV----KELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred hHhcCCCCCCccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4666666666666665554444 666666666666666666666666666666663
No 430
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=26.62 E-value=8.3e+02 Score=26.33 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhh-------hHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHh
Q 006838 459 VLRILMQKVKSLEQNL-------SVLEDYIK---ELNQRQQDVFPELDREITRISLLLEK----SKLELEELVKWRETME 524 (629)
Q Consensus 459 VlKiLmqKvksLE~N~-------Slle~YiE---eln~ry~~~f~~l~~el~~~~~~Lek----~~aeI~~L~e~K~~~e 524 (629)
.+.-|+..++.++-+. .++.+.+. .--++|-..|..++.+++++...|++ +..++..|.+..+...
T Consensus 50 ~L~~L~~~~~~~dp~~~~~~~~~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~ 129 (333)
T PF05816_consen 50 LLNELRKEMDELDPSELKDEKKKGFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNW 129 (333)
T ss_pred HHHHHHHHHHhCChhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhchhhhhHHHHHHHHHHHHH------------------HHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHH
Q 006838 525 RGLSDLESWKTVVSFRVNELI------------------KENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACF 582 (629)
Q Consensus 525 k~~~~l~swks~VSsqLd~l~------------------reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f~~l 582 (629)
....+|..--..-...++.+. ++...+..-++.++.+..+|+--..+.+....-+-.+
T Consensus 130 ~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqir~i 205 (333)
T PF05816_consen 130 EYYQELEKYIAAGELKLEELEAELLPALQADAEGDQMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQIRMI 205 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
No 431
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=26.62 E-value=3.8e+02 Score=29.23 Aligned_cols=27 Identities=4% Similarity=0.053 Sum_probs=12.2
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 541 VNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 541 Ld~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
+.+++++...+..++++-+++...|++
T Consensus 129 ~~~~t~~la~~t~~L~~~~~~l~q~~~ 155 (301)
T PF06120_consen 129 QADATRKLAEATRELAVAQERLEQMQS 155 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 432
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=26.56 E-value=3.6e+02 Score=29.30 Aligned_cols=11 Identities=36% Similarity=0.615 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q 006838 460 LRILMQKVKSL 470 (629)
Q Consensus 460 lKiLmqKvksL 470 (629)
=|.||-|-|.|
T Consensus 212 GK~LMAKCR~L 222 (330)
T KOG2991|consen 212 GKMLMAKCRTL 222 (330)
T ss_pred hHHHHHHHHHH
Confidence 37888887766
No 433
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=26.52 E-value=4.6e+02 Score=27.67 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 456 GDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 456 gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
.+.||.-|+.+-=.-.+-..+++-+.-|...| +.-|+....+.+..+++++...+.. +|+.+..|+.|+.
T Consensus 210 ~~~il~~L~~~yl~~~ly~alles~asE~aaR----m~AM~~At~Na~e~i~~L~~~yNr~--RQa~IT~Ei~EIv 279 (285)
T TIGR03323 210 PEETFSALIREYLFVSLFRACAESLASENASR----LAAMQRAEKNIDELLDDLNRRFHRL--RQSAIDEELFDVV 279 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 47788888877655555555555555555554 4778888888888888887666655 7788998997774
No 434
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=26.47 E-value=7e+02 Score=25.93 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006838 478 EDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWR 520 (629)
Q Consensus 478 e~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K 520 (629)
..|+..-+++- ..-.+.+++-..+...-+.-+.|+.++.+.|
T Consensus 69 GeYls~kse~d-~~~~~~~re~~~i~~~p~~e~~el~~iy~~~ 110 (234)
T cd02433 69 GEYVSVTSQRE-LLEASIPDERRELRKHPLEEAAELALIYRAK 110 (234)
T ss_pred hhhhhhhhHHH-HHHHHHHHHHHHhhhCcHHHHHHHHHHHHHc
Confidence 47776555541 1112233343444444444556666665555
No 435
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.46 E-value=7.1e+02 Score=25.49 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006838 456 GDTVLRILMQKVKSLEQNLSVLEDYIKE 483 (629)
Q Consensus 456 gdSVlKiLmqKvksLE~N~Slle~YiEe 483 (629)
++.-|-+|.+||+.--.-..-+..|+.|
T Consensus 3 ~~~G~~~L~~r~k~g~~~~~el~~f~ke 30 (261)
T cd07648 3 KNNGFDVLYHNMKHGQIAVKELADFLRE 30 (261)
T ss_pred CCcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3555677777777655555555555544
No 436
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.44 E-value=8.2e+02 Score=26.16 Aligned_cols=9 Identities=11% Similarity=0.493 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 006838 496 DREITRISL 504 (629)
Q Consensus 496 ~~el~~~~~ 504 (629)
+.++.+..+
T Consensus 71 ene~~~~ne 79 (246)
T KOG4657|consen 71 ENELVKVNE 79 (246)
T ss_pred HHHHHHHHH
Confidence 333333333
No 437
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=26.42 E-value=3.9e+02 Score=31.27 Aligned_cols=11 Identities=27% Similarity=0.761 Sum_probs=5.4
Q ss_pred CCCCCCcccee
Q 006838 437 AKIPDPVVEVR 447 (629)
Q Consensus 437 ~~~~~p~~e~~ 447 (629)
..+|+|.+-+.
T Consensus 146 ~~lp~~~eil~ 156 (555)
T TIGR03545 146 SQLPDPRALLK 156 (555)
T ss_pred ccCCCHHHHhc
Confidence 34566654333
No 438
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.12 E-value=3.9e+02 Score=31.90 Aligned_cols=21 Identities=33% Similarity=0.397 Sum_probs=9.8
Q ss_pred HHHHHHhhHHHHHHHHHHhhh
Q 006838 542 NELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 542 d~l~reN~~LR~~Ve~v~~~q 562 (629)
-.|..||+-|.-.|..+|..|
T Consensus 173 SELEEENIsLQKqVs~LR~sQ 193 (772)
T KOG0999|consen 173 SELEEENISLQKQVSNLRQSQ 193 (772)
T ss_pred HHHHHhcchHHHHHHHHhhhh
Confidence 344444544444444444444
No 439
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=26.04 E-value=8.6e+02 Score=26.28 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHh
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDR---EITRISLLLEKS 509 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~---el~~~~~~Lek~ 509 (629)
+-=+..|.+|...|...+..+.+-+..+..++...-++.+. +++++...-.++
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KL 76 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKL 76 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666555555555555444443 444444333333
No 440
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.89 E-value=9.4e+02 Score=26.70 Aligned_cols=19 Identities=5% Similarity=0.303 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhhhhccc
Q 006838 550 MLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 550 ~LR~~Ve~v~~~q~~mEnK 568 (629)
.++..|.++++++..|.=|
T Consensus 332 ~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 4666777777777777644
No 441
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.77 E-value=1.2e+03 Score=29.93 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 006838 537 VSFRVNELIKENSMLRIDVEKVSSDQA 563 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~~~q~ 563 (629)
+..+.+.+..++..|+..|-.+..++.
T Consensus 841 ~~~~~~~l~~e~~~l~~kv~~~~~~~~ 867 (1174)
T KOG0933|consen 841 LEKQISSLKSELGNLEAKVDKVEKDVK 867 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 344555666666666666655555543
No 442
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.57 E-value=4.1e+02 Score=30.62 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=43.8
Q ss_pred HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 006838 460 LRILMQKVKS--LEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVV 537 (629)
Q Consensus 460 lKiLmqKvks--LE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~V 537 (629)
.|.||+++.- -+.|++-=-+|-.|...+.+.+..-++++++.....|-+....|.+|...+.+.+.. -.+
T Consensus 123 v~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h~a~s--------lh~ 194 (542)
T KOG0993|consen 123 VKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKHHKAES--------LHV 194 (542)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcccchH--------HHH
Confidence 4445554443 334444444555566666666666666666666666655555566665444444322 234
Q ss_pred HHHHHHHHHHh
Q 006838 538 SFRVNELIKEN 548 (629)
Q Consensus 538 SsqLd~l~reN 548 (629)
.+-|=.|.||.
T Consensus 195 ~t~lL~L~RD~ 205 (542)
T KOG0993|consen 195 FTDLLNLARDK 205 (542)
T ss_pred HHHHHHHhcCC
Confidence 55555566666
No 443
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=25.56 E-value=1.1e+02 Score=31.96 Aligned_cols=40 Identities=33% Similarity=0.621 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhHHH
Q 006838 457 DTVLRILMQKVKSLE-QNLSVLEDYIKELNQRQQDVFPELD 496 (629)
Q Consensus 457 dSVlKiLmqKvksLE-~N~Slle~YiEeln~ry~~~f~~l~ 496 (629)
|.++.+|.+|=|.-| .|-.--++|++.|+.+|..-|..++
T Consensus 138 e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~ 178 (216)
T COG1428 138 ETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYD 178 (216)
T ss_pred HHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999 6666669999999999999888773
No 444
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=25.54 E-value=1.5e+02 Score=32.49 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=21.1
Q ss_pred HHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 522 TMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 522 ~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
.++..+++++.+-..+...+..+.+....|...+..+.+.
T Consensus 148 e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 148 ELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444445555556666666666666655543
No 445
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.51 E-value=3.4e+02 Score=27.79 Aligned_cols=91 Identities=23% Similarity=0.347 Sum_probs=40.1
Q ss_pred CCCCchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhch
Q 006838 452 GRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQD---VFPELDREITRISLLLEKSKLELEELVKWRETMERGLS 528 (629)
Q Consensus 452 ~r~~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~---~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~ 528 (629)
=|+|.+. |.-+++.|+.+- ...-.....++....|.+ .++.++....++..+|++.+ .+.++.+-. ++|
T Consensus 100 iRVP~~~-~~~~l~~l~~~g-~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie----~~L- 171 (262)
T PF14257_consen 100 IRVPADK-FDSFLDELSELG-KVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIE----REL- 171 (262)
T ss_pred EEECHHH-HHHHHHHHhccC-ceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH----HHH-
Confidence 3777643 555666677554 222222234444444421 12333333333333333221 233332211 122
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 006838 529 DLESWKTVVSFRVNELIKENSMLRIDVE 556 (629)
Q Consensus 529 ~l~swks~VSsqLd~l~reN~~LR~~Ve 556 (629)
+.|..++|.+......|..+|.
T Consensus 172 ------~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 172 ------SRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhc
Confidence 4455666666666666666553
No 446
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=25.47 E-value=1.4e+02 Score=30.26 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITR 501 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~ 501 (629)
..|-.+++.|+-...-+++-++.+..+|.+.|..||.-+++
T Consensus 196 ~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 196 DSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQ 236 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555544443
No 447
>PF13270 DUF4061: Domain of unknown function (DUF4061)
Probab=25.44 E-value=3.6e+02 Score=24.53 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHH
Q 006838 531 ESWKTVVSFRVNELIKENSMLRIDVE 556 (629)
Q Consensus 531 ~swks~VSsqLd~l~reN~~LR~~Ve 556 (629)
.+++......|++|.+....|...|+
T Consensus 64 ~~~~~~~~~nm~~L~~~Le~Ls~sIe 89 (90)
T PF13270_consen 64 ESNKTQSDENMDKLFSNLEQLSNSIE 89 (90)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 57888888889999988888887775
No 448
>PRK08724 fliD flagellar capping protein; Validated
Probab=25.35 E-value=2.3e+02 Score=34.01 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=33.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 464 MQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 464 mqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
..|.++|+..+.-+.+-++.++.|+...-..|.++|+..+.++.+|++...-|
T Consensus 616 ~~R~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L 668 (673)
T PRK08724 616 RTREKSLREQNYRLNDDQVALDRRMESLEKRTHAKFAAMQDATGKMQGQLGGM 668 (673)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666666666666666666666666666666665444433
No 449
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=25.33 E-value=2.8e+02 Score=30.60 Aligned_cols=95 Identities=17% Similarity=0.064 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVF------PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f------~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
..|.-||+.--.=--=..-...|.+.+-..|++.. -++++-+..+...++++..+|.+|.+.-++ ..
T Consensus 197 ~~F~~l~~~T~~R~~f~~r~~~Yf~~l~~~f~d~a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~-------~~ 269 (406)
T PF02388_consen 197 DDFYDLYKETAERKGFSIRSLEYFENLYDAFGDKAKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEK-------NP 269 (406)
T ss_dssp HHHHHHHHHHHHHTT-----HHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------T
T ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHhcCCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------Cc
Confidence 45666665442211111135678888888876521 344555555555555555555555332111 11
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 006838 532 SWKTVVSFRVNELIKENSMLRIDVEKVSSDQA 563 (629)
Q Consensus 532 swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~ 563 (629)
....|+.++.+....+..+++++++-++
T Consensus 270 ----k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 270 ----KKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666665443
No 450
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=25.31 E-value=5.2e+02 Score=24.54 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry 488 (629)
+-..+.+-.+++.+-.++.-|.++--+...++
T Consensus 43 ~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl 74 (141)
T PF13874_consen 43 EEEIAQHRERLKEINDKLEELQKHDLETSARL 74 (141)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34445555555555555444444433333333
No 451
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=25.27 E-value=1.2e+03 Score=27.78 Aligned_cols=19 Identities=32% Similarity=0.509 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhhhHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYI 481 (629)
Q Consensus 463 LmqKvksLE~N~Slle~Yi 481 (629)
.|.+|..||..++-|..-+
T Consensus 48 ~~~~V~eLE~sL~eLk~q~ 66 (617)
T PF15070_consen 48 DISRVQELERSLSELKNQM 66 (617)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4555666666655554433
No 452
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.07 E-value=3.3e+02 Score=28.51 Aligned_cols=61 Identities=11% Similarity=0.278 Sum_probs=39.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchh
Q 006838 465 QKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSD 529 (629)
Q Consensus 465 qKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~ 529 (629)
+||..||.-+..-.+=+-+|. ..+.+|+.|+.++-..+|...-+|+.+++++...-.++.+
T Consensus 40 ~r~~~le~~~~~~~~~~~~l~----~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 40 DRVTQLERISNAHSQLLTQLQ----QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566555533332222222333 3447888899999999999988899998877666555533
No 453
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=24.94 E-value=4.3e+02 Score=22.42 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELD-REITRISLLLEKSKLELEELVKWRETME 524 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~-~el~~~~~~Lek~~aeI~~L~e~K~~~e 524 (629)
|....+++...+..+..|..|..++...+.....-+. .++.....++..+...|......-+..+
T Consensus 7 l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 72 (123)
T PF02050_consen 7 LAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLE 72 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777777777666444443331000 2333344444444444444444333333
No 454
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=24.89 E-value=4.6e+02 Score=22.72 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
..|+..+.++....+.++++=.-|.++... | .+.-+.|..-|..=|.+||.|-....+||.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~----------~----~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKT----------W----REERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H----HHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 344455555555555555554444333322 2 234466677777778888888877777764
No 455
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=24.88 E-value=5.9e+02 Score=24.00 Aligned_cols=72 Identities=21% Similarity=0.350 Sum_probs=53.0
Q ss_pred chhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHhhhchhhh
Q 006838 456 GDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKL---ELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 456 gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~a---eI~~L~e~K~~~ek~~~~l~ 531 (629)
++.+..-|..++..+=.|+.-++.-.++|...- ..|.++-.+...++++... +|.+++.|=+.|+.|+..+.
T Consensus 31 ~~~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~----~~l~kqt~qw~~~~~~~~~~LKEiGDveNWa~~iE~Dl~~i~ 105 (121)
T PF06320_consen 31 TNALVDHLNSRVSEAYENQKKIEKEAKQLQRNT----AKLAKQTDQWLKLVDSFNDALKEIGDVENWAEMIERDLRVIE 105 (121)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 477888899999999999988887777776654 5556666666666665433 56778889999998885553
No 456
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=24.88 E-value=1.9e+02 Score=34.05 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhchhhh
Q 006838 514 EELVKWRETMERGLSDLE 531 (629)
Q Consensus 514 ~~L~e~K~~~ek~~~~l~ 531 (629)
.+|+++||+.-++|+++.
T Consensus 193 NdLlDqRD~ll~eLS~~v 210 (626)
T PRK08871 193 NDLMDQHEKLVKELSQYT 210 (626)
T ss_pred hhhHHHHHHHHHHHHhhc
Confidence 478888888887776663
No 457
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.86 E-value=5.2e+02 Score=32.13 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=16.3
Q ss_pred HHHHHHHHHH---HHHhhhhhHHHHHHHHHH
Q 006838 476 VLEDYIKELN---QRQQDVFPELDREITRIS 503 (629)
Q Consensus 476 lle~YiEeln---~ry~~~f~~l~~el~~~~ 503 (629)
+.++|.|++- ++|...++++|-++..+-
T Consensus 647 ~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lk 677 (970)
T KOG0946|consen 647 LAEKYHEELDDIQQKYKGLIRELDYQIENLK 677 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5667877765 456555555555544443
No 458
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.55 E-value=1.7e+02 Score=24.03 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
..+..+++.|..+|..|+.++..+..+...|.+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667777777777777777766665543
No 459
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional
Probab=24.55 E-value=5.3e+02 Score=27.24 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=48.3
Q ss_pred CchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 455 PGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 455 ~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
+.+.||+-|..+-=.-.+-..++|-+.-|+ .+.+.-|+....+....+++++...+.. +|+.+..|+.|+.
T Consensus 212 ~~~~il~~L~~~yl~~~ly~al~es~aSE~----aaRm~AM~~At~Na~e~i~~L~~~yNr~--RQ~~IT~El~EIV 282 (290)
T PRK14111 212 SPEEVLRALLPRFVEVQLYQAVLESIASEH----SARMVAMRNATDNAKELVRDLTLTYNKA--RQAAITKEVSEIA 282 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 346788888776544444444444444444 4445778888888888888887666654 7778998887774
No 460
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=24.53 E-value=9.4e+02 Score=28.77 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHH
Q 006838 476 VLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLEL 513 (629)
Q Consensus 476 lle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI 513 (629)
..++|+++...+.-..+-+.+.++++.+.+.++++.++
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~ 451 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQL 451 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555566666666666666666665443
No 461
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=24.50 E-value=5.5e+02 Score=30.16 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHH
Q 006838 478 EDYIKELNQRQQDVFPELDREITRISLLLEKSKL 511 (629)
Q Consensus 478 e~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~a 511 (629)
|+.+=+.|..+=+.|..+-+.+.++...|++|+.
T Consensus 26 E~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~ 59 (618)
T PF06419_consen 26 EKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNS 59 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444433
No 462
>PRK10869 recombination and repair protein; Provisional
Probab=24.49 E-value=7.5e+02 Score=28.67 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=33.9
Q ss_pred HHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHH---HhhHHHHHHHHHHhhh
Q 006838 506 LEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIK---ENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 506 Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~r---eN~~LR~~Ve~v~~~q 562 (629)
|+.+..+|..|..-+..+-..+.++..++..+..+|+.+.. +...|..+++++.++.
T Consensus 298 l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l 357 (553)
T PRK10869 298 LAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQA 357 (553)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666666677777777777777766544 3445555555555443
No 463
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional
Probab=24.29 E-value=5.3e+02 Score=27.27 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 456 GDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 456 gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
.+.||.-|+.+-=.-.+-..++|-+.-|+..|. .-|+....+....+++++...+.. +|..+..|+.|+.
T Consensus 215 ~~~vl~~L~~~yl~~~ly~al~es~aSE~aaRm----~AM~~At~Na~e~i~~L~l~yNr~--RQ~~IT~Ei~EIv 284 (291)
T PRK14110 215 EEEFLDKLLQLYLNYQLYRALVESNAAEHFARM----VAMDNATRNAGELIRKWTLIFNKA--RQEAITTELIDIV 284 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 477999888887666666667777776666665 667888888888888876665554 7778888887774
No 464
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=24.03 E-value=1.1e+03 Score=27.65 Aligned_cols=96 Identities=22% Similarity=0.375 Sum_probs=49.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---HHHhHHHHHHHHHH-------HHHHhhhchhhhhHHH
Q 006838 466 KVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLL---LEKSKLELEELVKW-------RETMERGLSDLESWKT 535 (629)
Q Consensus 466 KvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~---Lek~~aeI~~L~e~-------K~~~ek~~~~l~swks 535 (629)
||+-|+-+-.-|+.-++|| +..+.+--.+ +.++|..|.+|.|- |..++|-+..++.--.
T Consensus 332 ~IqdLq~sN~yLe~kvkeL-----------Q~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la 400 (527)
T PF15066_consen 332 RIQDLQCSNLYLEKKVKEL-----------QMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALA 400 (527)
T ss_pred HHHHhhhccHHHHHHHHHH-----------HHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHH
Confidence 4445555555555555554 3333332222 23344445555442 2334444555554445
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhH
Q 006838 536 VVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAV 572 (629)
Q Consensus 536 ~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laV 572 (629)
.....|..-..|+..|-.++.++.-.-..|+-+-++.
T Consensus 401 ~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~e 437 (527)
T PF15066_consen 401 NTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTE 437 (527)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5556666666777777777776665555555554444
No 465
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=23.90 E-value=3.7e+02 Score=31.06 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=29.6
Q ss_pred chhHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHhhhh
Q 006838 456 GDTVLRILMQKVKSLEQNL---SVLEDYIKELNQRQQDVF 492 (629)
Q Consensus 456 gdSVlKiLmqKvksLE~N~---Slle~YiEeln~ry~~~f 492 (629)
.|=|||++..|||.=++-+ +.-..||+-|..||++-.
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~t 285 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFT 285 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcc
Confidence 4899999999999988854 567788888888886543
No 466
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=23.89 E-value=5.9e+02 Score=27.34 Aligned_cols=12 Identities=8% Similarity=0.172 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHH
Q 006838 548 NSMLRIDVEKVS 559 (629)
Q Consensus 548 N~~LR~~Ve~v~ 559 (629)
--.||.-++.+|
T Consensus 108 y~~lk~h~d~lR 119 (286)
T KOG4451|consen 108 YMELKSHADELR 119 (286)
T ss_pred HHHHHHHHHHHH
Confidence 345677777776
No 467
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=23.89 E-value=4.5e+02 Score=27.36 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 530 LESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 530 l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
...=|..+..++..+..+...|...+++-..+...++.+
T Consensus 73 ~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~e 111 (246)
T PF00769_consen 73 QEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEE 111 (246)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555666666666666666666655555555543
No 468
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.78 E-value=1.1e+03 Score=29.17 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHhhhhhHHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLS--------VLEDYIKELNQRQQDVFPELDREI 499 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~S--------lle~YiEeln~ry~~~f~~l~~el 499 (629)
-=++||.|++|.=|.... +=.--+..||--+...+.+..+.+
T Consensus 401 RrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~ 450 (861)
T PF15254_consen 401 RRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQ 450 (861)
T ss_pred HHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Confidence 348899999988665442 222335566666666665555443
No 469
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=23.77 E-value=1.2e+03 Score=27.14 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=32.2
Q ss_pred HHhhhchhhhhHHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHhhhhhhcccch
Q 006838 522 TMERGLSDLESWKTVVSFRVNELIKE--------------------NSMLRIDVEKVSSDQANLESKEL 570 (629)
Q Consensus 522 ~~ek~~~~l~swks~VSsqLd~l~re--------------------N~~LR~~Ve~v~~~q~~mEnK~l 570 (629)
..+..+..++..+..++.|+++|+.+ ..=||..++.+++++..+++.+.
T Consensus 96 ~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~ 164 (475)
T PRK10361 96 HADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEA 164 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666666666543 24478888888888888876654
No 470
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=23.76 E-value=5.1e+02 Score=24.23 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHh
Q 006838 458 TVLRILMQKVKSLE 471 (629)
Q Consensus 458 SVlKiLmqKvksLE 471 (629)
+.+|.|..-++.|+
T Consensus 33 ~~l~kL~~~i~eld 46 (132)
T PF10392_consen 33 TPLKKLNFDIQELD 46 (132)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 471
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.70 E-value=3.6e+02 Score=23.23 Aligned_cols=73 Identities=29% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhch
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQD-----------VFPELDREITRISLLLEKSKLELEELVKWRETMERGLS 528 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~-----------~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~ 528 (629)
+..+..++..|+....-.+.=+++|..-=.+ +..+.+.-...+..-++++..+|..|......+++.+.
T Consensus 14 l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 14 LQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 006838 529 DLES 532 (629)
Q Consensus 529 ~l~s 532 (629)
+++.
T Consensus 94 ~~~~ 97 (106)
T PF01920_consen 94 ELKK 97 (106)
T ss_dssp HHHH
T ss_pred HHHH
No 472
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.68 E-value=4.4e+02 Score=26.56 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 475 SVLEDYIKELNQRQQDVFPELDREITRISLLL 506 (629)
Q Consensus 475 Slle~YiEeln~ry~~~f~~l~~el~~~~~~L 506 (629)
-+.++||.+=++.. ++|.+.-+.|++|..+-
T Consensus 17 EtVLrhIReG~TQL-~AFeEvg~~L~RTsAAC 47 (161)
T TIGR02894 17 ETVLRHIREGSTQL-SAFEEVGRALNRTAAAC 47 (161)
T ss_pred HHHHHHHhcchHHH-HHHHHHHHHHcccHHHh
Confidence 35678888877766 78999999999998754
No 473
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.49 E-value=1.4e+03 Score=27.90 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry 488 (629)
.+.+.+.++..++..+...++++...+
T Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ 338 (908)
T COG0419 312 ALLEELEELLEKLKSLEERLEKLEEKL 338 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 474
>PRK14127 cell division protein GpsB; Provisional
Probab=23.47 E-value=1.5e+02 Score=27.85 Aligned_cols=17 Identities=12% Similarity=0.280 Sum_probs=8.9
Q ss_pred HHHHHHHHHhHHHHHHH
Q 006838 500 TRISLLLEKSKLELEEL 516 (629)
Q Consensus 500 ~~~~~~Lek~~aeI~~L 516 (629)
..++.+|+.+-.++..+
T Consensus 26 ~EVD~FLd~V~~dye~l 42 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAF 42 (109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666654444444
No 475
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=23.15 E-value=4.1e+02 Score=29.63 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHhh
Q 006838 512 ELEELVKWRETMER 525 (629)
Q Consensus 512 eI~~L~e~K~~~ek 525 (629)
++.+|+..|..+.|
T Consensus 45 ~~~~l~~erN~~sk 58 (418)
T TIGR00414 45 EIEELQAKRNELSK 58 (418)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 476
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.00 E-value=1.2e+03 Score=27.05 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=12.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhH
Q 006838 464 MQKVKSLEQNLSVLEDYIKELNQRQQDVFPE 494 (629)
Q Consensus 464 mqKvksLE~N~Slle~YiEeln~ry~~~f~~ 494 (629)
||-.-+|+--.-.||...+++.-+-...+.+
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~l~E 279 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEESLSE 279 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3333333333333444444444333333333
No 477
>COG4266 Alc Allantoicase [Nucleotide transport and metabolism]
Probab=23.00 E-value=4.1e+02 Score=29.12 Aligned_cols=133 Identities=17% Similarity=0.286 Sum_probs=78.3
Q ss_pred CCcccccccccCceEeeccccc-cccCcccccCcccccccccCC------CCcEEEEEecceeeecEEEEeecccccCC-
Q 006838 218 GTEYNYASAMKGAKLVAHNKEA-KGASNILGKDHNKYLRNPCSV------AGKFVVIELGEETLVDTVKIANFEHYSSN- 289 (629)
Q Consensus 218 g~~~NYAS~d~GAkIl~sn~ea-kgasnIL~~nkD~YMLnPCsa------~~kfVVIELcEeI~V~~I~IANfE~fSS~- 289 (629)
...++-|+...||.+++.|..- -..+|+|.+-.-..|----.+ -.-|+||.|...=.|+.|.+--. ||..+
T Consensus 181 ~~~iDLA~~~nGg~~v~~sdqHfG~~~nLL~PGRg~nMgDGWET~RrRepGhDW~Iv~Lg~~g~Ie~i~VDTa-HFkGNy 259 (334)
T COG4266 181 DTIIDLAAMCNGGRAVACSDQHFGSVDNLLLPGRGINMGDGWETRRRREPGHDWVIVKLGARGFIEKILVDTA-HFKGNY 259 (334)
T ss_pred chhhhHHHHhCCcEEEEeccccccccccccccCcccccCCccccccccCCCCceEEEEccCCCceeeeEeehh-hccCCC
Confidence 3468999999999999987644 445667777666666432221 13599999999888888877443 34444
Q ss_pred CCeEEEEeecc-------CC--CCCceee-EEEEeeccccceeeeCC---CCceEEEEEEEEeeccCCcceeeeeEEEEe
Q 006838 290 FKEFELSGSLS-------YP--TEVWSPL-GKFVATNVKQLQSFKLP---EPKWVRYLKLNLLSHYGSEFYCTLSVVEVY 356 (629)
Q Consensus 290 pKdF~VsgS~~-------YP--t~~W~~L-G~F~a~N~R~~Q~F~L~---~~~w~RYLKle~LSHyGsE~YC~LS~vrVy 356 (629)
|+...+-+... -+ .-.|..| +.=... ......|... ...-+--||+.+.--=| ++++|||
T Consensus 260 p~~~slqaa~~~g~~~a~i~t~~~fW~eLlp~~Kl~-~d~eH~ye~~~~~~~~pvTHVrlni~PDGG------VsRlRi~ 332 (334)
T COG4266 260 PDFCSLQAALVEGGTAASINTQAMFWVELLPARKLG-PDKEHVYEIRLLRLSIPVTHVRLNIIPDGG------VSRLRIW 332 (334)
T ss_pred CceeEEeeecccCCcccccccccccHHhhcchhccC-CchhhhhhhhhhhcCCceeEEEEEEecCCC------eeEEEee
Confidence 44445554321 12 2346543 211111 1111234332 12346667777766555 7999999
Q ss_pred cc
Q 006838 357 GV 358 (629)
Q Consensus 357 G~ 358 (629)
|.
T Consensus 333 Gr 334 (334)
T COG4266 333 GR 334 (334)
T ss_pred cC
Confidence 83
No 478
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.97 E-value=1.3e+03 Score=29.82 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKE 483 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEe 483 (629)
+..+-.++..|+....-|++....
T Consensus 232 ~~~~~~~le~l~~~~~~l~~i~~~ 255 (1353)
T TIGR02680 232 LDEYRDELERLEALERALRNFLQR 255 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777666666644
No 479
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=22.93 E-value=1e+03 Score=30.95 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
..+|+++++.|..++...++|...++.++-
T Consensus 521 ~eele~~q~~~~~~~~~~~kv~~~rk~le~ 550 (1317)
T KOG0612|consen 521 EEELEDAQKKNDNAADSLEKVNSLRKQLEE 550 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445566666666666666666665555553
No 480
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=22.92 E-value=6.4e+02 Score=26.35 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=49.1
Q ss_pred CchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 455 PGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 455 ~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
+.+.||..|+..-=..-+-..+++-+.-|... .+.-|+....+....+++++..-+.. +|+.+..|+.|+.
T Consensus 214 ~~~~il~~L~~~yl~~~l~~al~eS~asE~~a----R~~AM~~At~Na~e~i~~L~~~yNr~--RQa~IT~Ei~EIv 284 (290)
T PF00231_consen 214 SPEEILDDLLPQYLFAQLYGALLESKASENAA----RMIAMENATDNAEELIDKLTLEYNRA--RQAEITQEIIEIV 284 (290)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHH
Confidence 34778888877665544455555555555544 45778888888888888886666654 7788998887764
No 481
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.81 E-value=9.7e+02 Score=25.77 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=27.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006838 466 KVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVK 518 (629)
Q Consensus 466 KvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e 518 (629)
+..++..+.+-+.+-+|+..+-.. ++..-...+..-...++++.++|.|+-+
T Consensus 143 ~~~~~~~~~~~~~~q~e~~~q~~e-~~~~~~~~ieeR~q~I~~lE~dI~dvN~ 194 (269)
T KOG0811|consen 143 RVDELSNNGSQSQQQLEEQAQDNE-ILEYQLDLIEEREQAIEQLEADIIDVNE 194 (269)
T ss_pred hhhhhhccchhhhhHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333 2222333455567778888888888854
No 482
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=22.81 E-value=8.1e+02 Score=24.84 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHhhh------------------
Q 006838 474 LSVLEDYIKELNQRQQDVFPELDREITRISLLLEKS---------KLELEELVKWRETMERG------------------ 526 (629)
Q Consensus 474 ~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~---------~aeI~~L~e~K~~~ek~------------------ 526 (629)
..+..+||.+-+++. ++|.+.-+.|.++..+-..- ..+|......|+.-.+.
T Consensus 17 ae~vl~~i~eg~tql-~afe~~g~~L~rt~aac~fRwNs~vrk~Yee~I~~AKK~Rke~kr~l~~~~~~~~~~~~~~~~~ 95 (170)
T PRK13923 17 AEVVLRHIREGGTQL-KAFEEVGDALKRTAAACGFRWNSVVRKQYQEQIKLAKKERKELRRQLGFSPSNLPDNVKTGDEI 95 (170)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHhhccccCCCcccccccccccc
Confidence 345677888877765 67777778888887766542 24455555544433221
Q ss_pred ----chhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 527 ----LSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 527 ----~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
.++ ..+...+..++..++..|..|..+++.+..++..++-
T Consensus 96 ~~~~~~~-it~~~v~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~e 139 (170)
T PRK13923 96 ITSGISD-LTLEDVLSEQIGKLQEEEEKLSWENQTLKQELAITEE 139 (170)
T ss_pred ccCCccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2344445667788888888888888888877755443
No 483
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=22.66 E-value=1.2e+03 Score=26.72 Aligned_cols=27 Identities=7% Similarity=0.020 Sum_probs=15.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 540 RVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 540 qLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
+.+.-......|+.+|+.+.+-.....
T Consensus 372 Er~~~~~~l~~~~~~~~~le~~~~~~~ 398 (582)
T PF09731_consen 372 ERNGRLAKLAELNSRLKALEEALDARS 398 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556667777766665544443
No 484
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=22.51 E-value=2.4e+02 Score=23.58 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHhhhchhhhhHHHHHHHHHHHHHHH
Q 006838 489 QDVFPELDREITRISLLLEKSKLELEELV-KWRETMERGLSDLESWKTVVSFRVNELIKE 547 (629)
Q Consensus 489 ~~~f~~l~~el~~~~~~Lek~~aeI~~L~-e~K~~~ek~~~~l~swks~VSsqLd~l~re 547 (629)
...+.+++..|.+...+|..|..|++++- ..|..+...+ ..+-++|+.+.++
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl-------~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKL-------RSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34568899999999999999988888884 3455555444 2334455555544
No 485
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.50 E-value=8.7e+02 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=18.5
Q ss_pred HHhhHHHHHHHHHHhhhhhhcccchhHH
Q 006838 546 KENSMLRIDVEKVSSDQANLESKELAVL 573 (629)
Q Consensus 546 reN~~LR~~Ve~v~~~q~~mEnK~laVl 573 (629)
-+...|+.++.+=.+...+++|+...+.
T Consensus 173 ~e~ekl~~~i~~d~~~i~~q~~R~~fi~ 200 (246)
T cd07597 173 AEVDKLEASIIKDKESIANQLNRSWFIR 200 (246)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3455566666666667777777776554
No 486
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.41 E-value=2.9e+02 Score=32.97 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhchhhhh
Q 006838 513 LEELVKWRETMERGLSDLES 532 (629)
Q Consensus 513 I~~L~e~K~~~ek~~~~l~s 532 (629)
-.+|+++||+.-++|+++..
T Consensus 192 ~NdLlDqRD~Ll~eLS~~v~ 211 (676)
T PRK05683 192 PNDLLDARDEAVRQLNELVG 211 (676)
T ss_pred chHhHHHHHHHHHHHHhhcC
Confidence 35788888888888876643
No 487
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=22.29 E-value=2.6e+02 Score=31.69 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 539 FRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 539 sqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
.+++.+.++...|+.+++.|+....+|+..
T Consensus 200 ~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~ 229 (475)
T PF10359_consen 200 SDIEELERHISSLKERIEFLENMLEDLEDS 229 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444555555555555555555555444433
No 488
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=22.19 E-value=6.5e+02 Score=24.21 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhhchhhh
Q 006838 511 LELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 511 aeI~~L~e~K~~~ek~~~~l~ 531 (629)
..|+.+.+.-|+.-|.+++|+
T Consensus 89 Qrlk~iK~l~eqflK~le~le 109 (130)
T PF04803_consen 89 QRLKAIKELHEQFLKSLEDLE 109 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 335555556666666665554
No 489
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.19 E-value=4.5e+02 Score=26.21 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 478 EDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 478 e~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
++|++++.....+. ...=.++.+.|+.|-.+|=|= +.+..+++++
T Consensus 7 ~~y~~~l~~~L~~~----~~~e~~~e~~L~eil~~Llea-Qk~G~tA~~l 51 (206)
T PF06570_consen 7 QEYIFDLRKYLRSS----GVSEEEIEELLEEILPHLLEA-QKKGKTARQL 51 (206)
T ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHH-HhCCCcHHHH
Confidence 46676665555211 112233555666664443333 2444566555
No 490
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=22.18 E-value=6.3e+02 Score=26.78 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=49.2
Q ss_pred CchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 455 PGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 455 ~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
+.+.||.-|+.+-=.-.+-..++|-+.-|+..| +.-|+....+....+++++...+.. +|..+..|+.|+.
T Consensus 213 ~~~~il~~L~~~yl~~~ly~al~es~aSE~aaR----m~AM~~At~Na~e~i~~L~~~yNr~--RQ~~IT~Ei~EIv 283 (291)
T PRK13425 213 SPAAIIDELVPKHLNTQVWRMMLESNAAEQAAR----MTAMDSATENAKELLRTLNISYNRA--RQAAITKELSEIV 283 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 347788888877654445555555555555444 4778888888888888886666654 7778888887774
No 491
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=22.17 E-value=2.7e+02 Score=31.33 Aligned_cols=42 Identities=10% Similarity=0.217 Sum_probs=16.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 006838 468 KSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKS 509 (629)
Q Consensus 468 ksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~ 509 (629)
..|+....-+++-++.++.|+...-..|.++|+..+.++.+|
T Consensus 409 ~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~m 450 (462)
T PRK08032 409 DGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSL 450 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444333333334444444444443
No 492
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=22.12 E-value=3e+02 Score=30.46 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=8.0
Q ss_pred cchhhhhhhhHHHHhhhc
Q 006838 610 GWVLILLSSSMTIFVTLL 627 (629)
Q Consensus 610 ~w~~ll~ss~~~~fi~~l 627 (629)
+|+-++++..++++++++
T Consensus 83 ~~~~~~~~~~~~t~l~lv 100 (408)
T TIGR03520 83 ELLRFLIEVVIVTFLILL 100 (408)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 493
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.10 E-value=3.4e+02 Score=25.85 Aligned_cols=61 Identities=15% Similarity=0.270 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETME 524 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~e 524 (629)
+++++|.+-..+.-..+++.....- ......+..++..+...++.+...++.|.++++.++
T Consensus 48 ~I~~lr~~G~sL~eI~~~l~~~~~~-~~~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~ 108 (134)
T cd04779 48 LIEHLKGQRLSLAEIKDQLEEVQRS-DKEQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTD 108 (134)
T ss_pred HHHHHHHCCCCHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566776666666666666544320 112233444455555555555555555555544444
No 494
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=21.99 E-value=2e+02 Score=29.25 Aligned_cols=42 Identities=21% Similarity=0.441 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRI 502 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~ 502 (629)
..|-.+++.|+-...-+++-++.+..+|.+.|..||.-+++.
T Consensus 196 ~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~l 237 (239)
T PF07195_consen 196 DSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQL 237 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 495
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=21.92 E-value=3.8e+02 Score=28.90 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 499 ITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 499 l~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
|.++-..+..++.++++|.+.++..+.++.+.+.=...+..+++.+.++...+..+++.+.+........
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEETKRN 70 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
No 496
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=21.87 E-value=6.4e+02 Score=26.67 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhh
Q 006838 454 IPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLES 532 (629)
Q Consensus 454 ~~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~s 532 (629)
++.+.||.-|+.+-=...+-..++|-+.-|...|. .-|+....+.+..|++++..-+.. +|+.+.+||.|+.+
T Consensus 211 p~~~~vl~~l~~~yl~~~ly~alles~aSE~aaRm----~AM~~At~Na~e~i~~L~l~yNr~--RQ~~IT~EL~EIv~ 283 (289)
T PRK13427 211 PSPEAILESLLPLVVKTAFLKAILEANASEQIARR----IAMKSATDAASEMIKLLTRGYNRV--RQAKITQEISEIVG 283 (289)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
No 497
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=21.85 E-value=6.3e+02 Score=27.87 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh--------------hHHHHHHHHHHHHHHHhhHHHHH
Q 006838 489 QDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE--------------SWKTVVSFRVNELIKENSMLRID 554 (629)
Q Consensus 489 ~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~--------------swks~VSsqLd~l~reN~~LR~~ 554 (629)
.+++.=|.++|.+--..=+.-|.+...|+++...+.+-..++. +=+..++.-|-+....|..|..+
T Consensus 8 ~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~E 87 (319)
T PF09789_consen 8 SEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEE 87 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhc
Q 006838 555 VEKVSSDQANLE 566 (629)
Q Consensus 555 Ve~v~~~q~~mE 566 (629)
|+.++.+...++
T Consensus 88 v~~Lrqkl~E~q 99 (319)
T PF09789_consen 88 VEELRQKLNEAQ 99 (319)
T ss_pred HHHHHHHHHHHh
No 498
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=21.81 E-value=3.4e+02 Score=29.80 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-------hhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhhhchhhh
Q 006838 460 LRILMQKVKSL-------EQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLE-LEELVKWRETMERGLSDLE 531 (629)
Q Consensus 460 lKiLmqKvksL-------E~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~ae-I~~L~e~K~~~ek~~~~l~ 531 (629)
+|-|-++||+. -.+.+ --++-+..||++|.++..+--.--.+ +..|.+-+++++.
T Consensus 22 Yk~LKK~lK~~~~~~~~~~~~~~-----------~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~------ 84 (310)
T KOG1161|consen 22 YKELKKLLKQYSIQTADSSPDSR-----------DESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA------ 84 (310)
T ss_pred HHHHHHHHHHhccccccCCcccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------
Q ss_pred hHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhhhhcc
Q 006838 532 SWKTVVSFRVNELIKEN-SMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 532 swks~VSsqLd~l~reN-~~LR~~Ve~v~~~q~~mEn 567 (629)
...+....+. ..||.++..+..++..+++
T Consensus 85 -------~~~~~~~~~~~~~lr~~l~~~~~em~~L~~ 114 (310)
T KOG1161|consen 85 -------LSLEPPSAEEMKELREELVDFHGEMVLLEN 114 (310)
T ss_pred -------cccCCcchhHHHHHHHHHHHHHHHHHHHHH
No 499
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=21.75 E-value=4.7e+02 Score=24.63 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 006838 486 QRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDV 555 (629)
Q Consensus 486 ~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~V 555 (629)
..|......+..++..-...++.++...+.|-+.-..+.||+ .+...+|..||.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL--------------~~Ak~e~~~Lr~dl 58 (125)
T PF03245_consen 3 QQYKRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKEL--------------ADAKAEIDRLRADL 58 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhHHHHHHHH
No 500
>PRK07737 fliD flagellar capping protein; Validated
Probab=21.65 E-value=2.1e+02 Score=32.75 Aligned_cols=45 Identities=13% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLL 505 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~ 505 (629)
..|-++++.|+....-+++-|+....||.+.|..||.-+++....
T Consensus 444 ~~l~~~i~~l~~~i~~~~~rl~~~e~ry~~qf~ale~~~s~mnsq 488 (501)
T PRK07737 444 FAIGKDLNQIETQIDRFQDRLKQIEDRYYKKFSAMEKAIQKANEQ 488 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!