Query 006838
Match_columns 629
No_of_seqs 149 out of 219
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:18:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dxt_A SUN domain-containing p 99.9 5.6E-25 1.9E-29 213.1 15.4 137 219-359 26-196 (198)
2 2yc2_A IFT25, intraflagellar t 99.4 2.1E-12 7.1E-17 117.4 13.4 132 220-359 5-139 (139)
3 1tvg_A LOC51668 protein; cell 99.1 3.2E-09 1.1E-13 99.0 15.5 135 217-359 10-147 (153)
4 3f2z_A Uncharacterized protein 98.8 1.1E-07 3.7E-12 86.1 15.8 116 241-359 29-149 (159)
5 2j1a_A Hyaluronidase, CBM32; p 98.8 7.3E-08 2.5E-12 84.0 12.7 115 240-357 26-150 (150)
6 3ggl_A Putative chitobiase; X- 98.7 5.8E-07 2E-11 82.6 15.9 115 242-359 40-159 (169)
7 2jda_A Yecbm32; hypothetical p 98.4 3.1E-06 1.1E-10 74.1 12.6 115 239-361 23-139 (145)
8 4a41_A GH89_CBM32-5, alpha-N-a 98.3 5E-06 1.7E-10 76.3 12.6 112 240-356 45-160 (161)
9 3hnm_A Putative chitobiase; PS 98.2 9.5E-06 3.2E-10 76.7 11.4 114 242-358 41-165 (172)
10 1w8o_A Bacterial sialidase; 3D 98.0 6E-05 2E-09 80.6 14.6 116 240-358 478-600 (601)
11 4a42_A GH89_CBM32-4, alpha-N-a 98.0 5.3E-05 1.8E-09 69.0 12.2 121 221-357 24-148 (149)
12 4a3z_A GH89_CBM32, alpha-N-ace 97.9 7.7E-05 2.6E-09 69.5 11.8 127 225-356 28-160 (161)
13 2v72_A CBM32, EXO-alpha-sialid 97.9 6.9E-05 2.3E-09 65.0 10.4 112 240-356 27-142 (143)
14 2v5d_A O-GLCNACASE NAGJ; famil 97.7 0.00021 7.1E-09 80.7 12.0 115 240-357 613-737 (737)
15 1k12_A Lectin; beta barrel, pr 97.6 0.0004 1.4E-08 63.8 11.5 127 229-359 14-154 (158)
16 2yfu_A Carbohydrate binding fa 97.6 0.00041 1.4E-08 65.1 11.4 127 229-360 8-141 (155)
17 1jhj_A APC10; beta sandwich, j 97.5 0.00055 1.9E-08 65.5 11.5 118 239-359 38-161 (171)
18 3lei_A Platelet aggregation fa 97.5 0.0012 4E-08 60.0 13.0 125 229-359 15-147 (153)
19 1k3i_A Galactose oxidase precu 97.5 0.00071 2.4E-08 73.1 13.0 116 241-359 43-166 (656)
20 2j1v_A Fucolectin-related prot 97.5 0.0018 6.2E-08 59.3 13.9 111 241-358 34-150 (151)
21 4gwi_A Lectinolysin, platelet 97.4 0.0026 8.8E-08 58.7 13.3 126 228-359 14-147 (153)
22 3cqo_A FBP32; F-lectin, fucole 97.3 0.002 6.9E-08 64.0 12.3 128 228-359 8-147 (293)
23 3ues_A Alpha-1,3/4-fucosidase; 97.2 0.003 1E-07 68.5 13.6 121 228-357 356-477 (478)
24 3eyp_A Putative alpha-L-fucosi 97.2 0.0019 6.3E-08 69.8 11.8 128 221-359 325-457 (469)
25 4a4a_A Alpha-N-acetylglucosami 97.1 0.0034 1.2E-07 72.9 13.4 123 228-359 29-154 (914)
26 3cqo_A FBP32; F-lectin, fucole 96.9 0.0045 1.6E-07 61.4 11.0 126 229-359 157-291 (293)
27 2j22_A Fucolectin-related prot 96.8 0.018 6E-07 52.8 13.1 111 241-358 31-147 (148)
28 1gqp_A DOC1/APC10; cell cycle, 96.8 0.013 4.6E-07 58.2 13.0 129 233-364 63-199 (221)
29 3bn6_A Lactadherin; anticoagul 96.2 0.014 4.8E-07 53.3 8.2 90 262-357 57-157 (158)
30 1czt_A Protein (coagulation fa 95.6 0.034 1.2E-06 51.0 8.1 92 262-359 56-158 (160)
31 3hny_M Coagulation factor VIII 95.2 0.062 2.1E-06 49.4 8.4 92 262-359 58-158 (159)
32 1o59_A Allantoicase; YIR029W, 95.1 0.11 3.9E-06 54.7 11.1 131 220-358 207-355 (355)
33 2zxq_A Endo-alpha-N-acetylgala 95.0 0.0039 1.3E-07 74.6 0.0 116 242-358 1246-1374(1376)
34 3oja_B Anopheles plasmodium-re 94.1 0.69 2.4E-05 49.4 14.6 106 457-562 462-581 (597)
35 4deq_A Neuropilin-1, vascular 94.1 0.16 5.5E-06 49.7 8.8 92 262-359 54-156 (218)
36 2vm9_A Discoidin-2, discoidin 93.9 0.15 5E-06 50.7 8.3 92 262-359 60-155 (257)
37 2qqi_A Neuropilin-1; VEGF rece 93.8 0.16 5.4E-06 51.2 8.5 92 262-359 55-157 (318)
38 2wuh_A Discoidin domain recept 93.8 0.3 1E-05 46.0 9.8 93 262-359 72-174 (178)
39 2w1s_A Hyaluronoglucosaminidas 93.0 0.82 2.8E-05 43.5 11.4 90 262-355 65-160 (192)
40 2qqj_A Neuropilin-2; VEGF rece 92.4 0.35 1.2E-05 48.8 8.5 92 262-359 56-158 (325)
41 1o59_A Allantoicase; YIR029W, 92.4 2.6 9E-05 44.6 15.2 132 221-359 35-196 (355)
42 2qqi_A Neuropilin-1; VEGF rece 91.6 0.49 1.7E-05 47.7 8.5 91 262-359 214-316 (318)
43 1c1g_A Tropomyosin; contractIl 89.9 7.7 0.00026 35.4 14.1 22 463-484 4-25 (284)
44 2qqj_A Neuropilin-2; VEGF rece 89.6 1.5 5.2E-05 44.2 10.0 91 261-359 214-323 (325)
45 2qqm_A Neuropilin-1; VEGF rece 89.4 1.4 4.8E-05 46.2 9.9 91 262-359 346-448 (450)
46 1deq_A Fibrinogen (alpha chain 89.1 1.7 5.9E-05 46.4 10.2 87 462-569 71-157 (390)
47 2v71_A Nuclear distribution pr 89.1 8.7 0.0003 37.4 14.4 98 460-557 51-155 (189)
48 2cho_A Glucosaminidase, hexosa 88.8 0.25 8.4E-06 56.2 3.9 114 234-358 597-714 (716)
49 3oja_A Leucine-rich immune mol 88.8 2.8 9.6E-05 44.0 11.6 100 462-568 364-471 (487)
50 3oja_A Leucine-rich immune mol 88.5 2.7 9.1E-05 44.1 11.2 31 535-565 424-454 (487)
51 2qqm_A Neuropilin-1; VEGF rece 88.1 1 3.4E-05 47.3 7.7 92 262-359 187-289 (450)
52 3na7_A HP0958; flagellar bioge 88.0 3.4 0.00012 40.8 11.0 27 493-519 56-82 (256)
53 2dfs_A Myosin-5A; myosin-V, in 87.3 5.5 0.00019 47.2 14.0 31 535-565 1019-1049(1080)
54 2wn3_A Discoidin-1 subunit A; 86.9 1.7 5.8E-05 43.2 8.2 90 262-359 59-154 (254)
55 2v66_B Nuclear distribution pr 86.6 18 0.00061 32.7 14.2 96 461-556 6-101 (111)
56 2qqo_A Neuropilin-2; VEGF rece 85.5 1.7 6E-05 45.7 7.9 92 262-359 185-287 (460)
57 1m1j_B Fibrinogen beta chain; 84.9 10 0.00034 41.4 13.5 29 460-488 102-130 (464)
58 3oja_B Anopheles plasmodium-re 84.9 12 0.00042 39.8 14.1 37 460-496 458-494 (597)
59 2iub_A CORA, divalent cation t 84.6 16 0.00054 37.5 14.3 49 578-626 305-354 (363)
60 4ev6_A Magnesium transport pro 84.2 23 0.0008 35.8 15.2 47 578-624 281-328 (339)
61 1sdd_B Coagulation factor V; c 83.6 2.3 8E-05 46.8 8.1 92 262-359 383-485 (647)
62 2v71_A Nuclear distribution pr 83.3 13 0.00044 36.3 12.2 38 530-567 72-116 (189)
63 3o0z_A RHO-associated protein 81.6 18 0.00061 34.8 12.2 54 478-531 12-75 (168)
64 1sdd_B Coagulation factor V; c 80.6 2.1 7.2E-05 47.1 6.4 92 262-359 543-645 (647)
65 2qqo_A Neuropilin-2; VEGF rece 80.4 7.2 0.00025 41.0 10.1 93 261-359 343-452 (460)
66 1m1j_A Fibrinogen alpha subuni 80.2 18 0.00061 39.7 13.0 54 463-516 70-123 (491)
67 1i84_S Smooth muscle myosin he 80.0 6.6 0.00023 46.6 10.6 10 327-336 677-686 (1184)
68 3cve_A Homer protein homolog 1 79.8 13 0.00046 31.2 9.5 63 463-525 5-67 (72)
69 2qqk_A Neuropilin-2; VEGF rece 79.4 3.8 0.00013 44.4 7.8 92 262-359 304-406 (579)
70 1i84_S Smooth muscle myosin he 79.4 4.3 0.00015 48.1 8.8 28 461-488 860-887 (1184)
71 3ghg_B Fibrinogen beta chain; 78.9 8.6 0.0003 42.0 10.2 100 457-569 94-193 (461)
72 2jee_A YIIU; FTSZ, septum, coi 78.7 17 0.00059 31.2 9.9 66 491-563 7-72 (81)
73 4ag4_A Epithelial discoidin do 78.1 9.1 0.00031 40.2 9.8 93 262-359 59-161 (351)
74 2r7e_B Coagulation factor VIII 78.1 2.4 8.2E-05 48.4 6.0 92 262-359 665-765 (770)
75 2qqk_A Neuropilin-2; VEGF rece 77.7 8.8 0.0003 41.5 10.0 95 261-361 462-573 (579)
76 3ghg_A Fibrinogen alpha chain; 77.3 11 0.00039 41.8 10.5 18 549-566 134-151 (562)
77 3onj_A T-snare VTI1; helix, HA 77.2 27 0.00093 30.0 11.0 60 502-561 32-95 (97)
78 4gz9_A Neuropilin-1, A5 protei 75.9 6.2 0.00021 43.1 8.2 92 262-359 305-407 (577)
79 3cvf_A Homer-3, homer protein 74.8 19 0.00065 30.8 9.1 65 461-525 9-73 (79)
80 3na7_A HP0958; flagellar bioge 73.6 53 0.0018 32.3 13.5 35 493-527 35-69 (256)
81 2dfs_A Myosin-5A; myosin-V, in 73.4 15 0.0005 43.7 11.0 11 327-337 655-665 (1080)
82 1t2k_D Cyclic-AMP-dependent tr 73.3 4 0.00014 32.4 4.4 38 533-570 23-60 (61)
83 2r7e_B Coagulation factor VIII 73.1 3.8 0.00013 46.8 5.9 92 261-359 505-608 (770)
84 3tnu_B Keratin, type II cytosk 73.1 17 0.00059 32.5 9.1 100 486-598 25-124 (129)
85 3ghg_A Fibrinogen alpha chain; 72.9 21 0.00073 39.7 11.3 36 460-495 66-101 (562)
86 3gdb_A Endo-D, putative unchar 71.3 0.83 2.8E-05 53.5 0.0 110 221-340 800-925 (937)
87 3hnw_A Uncharacterized protein 70.7 40 0.0014 31.1 11.1 56 511-566 75-130 (138)
88 3gza_A Putative alpha-L-fucosi 70.3 17 0.00058 39.3 9.8 87 262-357 355-441 (443)
89 3s4r_A Vimentin; alpha-helix, 70.1 40 0.0014 29.0 10.3 31 538-568 62-92 (93)
90 3mov_A Lamin-B1; LMNB1, B-type 69.7 18 0.00061 31.5 8.1 51 465-515 12-62 (95)
91 3tnu_A Keratin, type I cytoske 68.6 19 0.00066 32.3 8.4 98 487-597 28-125 (131)
92 1x8y_A Lamin A/C; structural p 66.2 35 0.0012 28.9 9.0 46 469-514 7-52 (86)
93 3hd7_B Syntaxin-1A; membrane p 65.1 71 0.0024 27.9 12.3 84 481-579 13-96 (109)
94 1gk4_A Vimentin; intermediate 64.9 43 0.0015 28.1 9.3 46 469-514 5-50 (84)
95 3tnu_A Keratin, type I cytoske 63.6 11 0.00036 34.1 5.6 19 540-558 85-103 (131)
96 1ci6_A Transcription factor AT 63.4 9.8 0.00034 30.6 4.8 34 533-566 24-57 (63)
97 4gz9_A Neuropilin-1, A5 protei 63.3 24 0.00082 38.5 9.4 89 262-359 464-566 (577)
98 2ocy_A RAB guanine nucleotide 62.9 80 0.0028 29.9 11.6 61 464-524 12-78 (154)
99 3s4r_A Vimentin; alpha-helix, 61.8 78 0.0027 27.3 10.8 28 460-487 18-45 (93)
100 3ghg_C Fibrinogen gamma chain; 61.6 40 0.0014 36.3 10.5 99 457-569 37-135 (411)
101 3efg_A Protein SLYX homolog; x 61.3 16 0.00055 30.8 5.9 52 462-517 11-62 (78)
102 1jnm_A Proto-oncogene C-JUN; B 61.3 13 0.00043 29.6 5.1 37 533-569 23-59 (62)
103 1l8d_A DNA double-strand break 61.1 67 0.0023 27.4 10.1 27 538-564 70-96 (112)
104 1d7m_A Cortexillin I; coiled-c 60.6 90 0.0031 27.6 14.2 51 513-563 48-98 (101)
105 1gu4_A CAAT/enhancer binding p 58.4 13 0.00045 31.5 4.9 36 533-568 37-72 (78)
106 3lay_A Zinc resistance-associa 57.4 25 0.00085 33.7 7.3 66 481-560 69-134 (175)
107 3mxz_A Tubulin-specific chaper 57.1 80 0.0028 28.4 10.1 41 464-512 4-44 (116)
108 3ol1_A Vimentin; structural ge 57.0 1.1E+02 0.0036 27.3 12.2 20 534-553 85-104 (119)
109 2wt7_A Proto-oncogene protein 56.8 15 0.00051 29.4 4.8 35 533-567 24-58 (63)
110 1go4_E MAD1 (mitotic arrest de 56.2 60 0.0021 28.8 8.9 30 538-567 67-96 (100)
111 1m1j_C Fibrinogen gamma chain; 55.7 1.2E+02 0.004 32.6 12.8 33 537-569 103-135 (409)
112 1m1j_B Fibrinogen beta chain; 55.5 1.2E+02 0.004 33.2 12.9 35 458-492 86-120 (464)
113 2w6a_A ARF GTPase-activating p 55.3 49 0.0017 27.2 7.5 42 504-552 20-61 (63)
114 1t7s_A BAG-1 cochaperone; stru 55.2 30 0.001 32.3 7.2 106 457-562 15-131 (137)
115 3mq9_A Bone marrow stromal ant 53.4 2.1E+02 0.0072 29.7 14.7 12 184-195 139-150 (471)
116 2fxo_A Myosin heavy chain, car 52.9 1.3E+02 0.0044 27.0 15.1 107 460-566 15-124 (129)
117 3m48_A General control protein 52.2 18 0.0006 26.6 4.0 27 536-562 4-30 (33)
118 2ocy_A RAB guanine nucleotide 52.1 1.6E+02 0.0055 27.9 13.1 37 493-529 54-90 (154)
119 3vkg_A Dynein heavy chain, cyt 50.8 1.1E+02 0.0038 40.7 13.7 66 498-570 2036-2101(3245)
120 1hjb_A Ccaat/enhancer binding 50.7 19 0.00066 31.0 4.8 32 536-567 40-71 (87)
121 2yy0_A C-MYC-binding protein; 49.1 15 0.0005 29.1 3.5 30 539-568 19-48 (53)
122 3mq7_A Bone marrow stromal ant 48.7 1.6E+02 0.0056 27.0 11.4 66 490-555 39-108 (121)
123 3hnw_A Uncharacterized protein 47.6 1.5E+02 0.0052 27.1 10.6 56 493-562 78-133 (138)
124 3q8t_A Beclin-1; autophagy, AT 47.3 1.4E+02 0.0048 25.8 10.1 52 455-518 2-53 (96)
125 2qyw_A Vesicle transport throu 47.3 1.4E+02 0.0048 25.8 11.5 82 474-555 14-101 (102)
126 4dci_A Uncharacterized protein 47.1 1.3E+02 0.0044 28.3 10.2 37 478-514 24-60 (150)
127 2jee_A YIIU; FTSZ, septum, coi 46.2 1.1E+02 0.0038 26.3 8.7 63 506-568 8-70 (81)
128 1nkp_A C-MYC, MYC proto-oncoge 45.2 46 0.0016 28.3 6.2 65 480-559 17-86 (88)
129 1xoy_A Hypothetical protein AT 44.8 1.4E+02 0.0047 28.1 10.0 99 252-359 50-161 (161)
130 1gqe_A Release factor 2, RF2; 44.7 1.7E+02 0.006 31.0 11.9 12 460-471 11-22 (365)
131 2oxj_A Hybrid alpha/beta pepti 43.2 32 0.0011 25.4 4.1 28 535-562 4-31 (34)
132 3a7p_A Autophagy protein 16; c 42.6 96 0.0033 29.4 8.5 82 470-551 40-129 (152)
133 1wt6_A Myotonin-protein kinase 42.5 1.2E+02 0.004 26.2 8.3 51 519-569 25-75 (81)
134 1x79_B RAB GTPase binding effe 42.4 1.9E+02 0.0064 26.2 10.0 37 519-555 39-75 (112)
135 1m1j_C Fibrinogen gamma chain; 42.3 86 0.0029 33.6 9.2 28 535-562 108-135 (409)
136 3c3g_A Alpha/beta peptide with 42.0 34 0.0012 25.1 4.1 28 535-562 3-30 (33)
137 3c3f_A Alpha/beta peptide with 41.9 34 0.0012 25.2 4.1 28 535-562 4-31 (34)
138 3bas_A Myosin heavy chain, str 41.2 1.6E+02 0.0056 24.8 10.9 72 490-561 14-85 (89)
139 2nrj_A HBL B protein; enteroto 40.5 3.2E+02 0.011 28.3 12.9 55 513-567 143-197 (346)
140 1nfn_A Apolipoprotein E3; lipi 39.4 1.2E+02 0.0041 28.9 8.9 19 470-488 26-44 (191)
141 2q12_A DIP13 alpha, DCC-intera 39.1 2.7E+02 0.0093 26.8 15.4 84 509-592 119-218 (265)
142 3qne_A Seryl-tRNA synthetase, 38.9 65 0.0022 35.3 7.8 31 499-529 35-65 (485)
143 3htk_A Structural maintenance 38.1 1.4E+02 0.0046 23.0 7.6 40 477-516 10-52 (60)
144 1wle_A Seryl-tRNA synthetase; 37.8 1.6E+02 0.0055 32.2 10.7 91 477-568 50-145 (501)
145 4h22_A Leucine-rich repeat fli 37.6 1.7E+02 0.0057 26.3 8.8 74 482-562 5-81 (103)
146 2dgc_A Protein (GCN4); basic d 37.6 40 0.0014 27.2 4.5 29 534-562 32-60 (63)
147 1ez3_A Syntaxin-1A; three heli 37.5 2E+02 0.0067 24.7 14.9 63 456-518 3-75 (127)
148 3rkg_A Magnesium transporter M 37.5 3E+02 0.01 27.7 11.9 62 498-559 175-247 (261)
149 1dh3_A Transcription factor CR 36.3 46 0.0016 26.2 4.5 28 535-562 25-52 (55)
150 2xdj_A Uncharacterized protein 35.2 1.2E+02 0.0041 25.8 7.3 33 536-568 24-56 (83)
151 3tnu_B Keratin, type II cytosk 35.1 2.4E+02 0.0082 25.0 9.9 55 461-515 39-100 (129)
152 2dq0_A Seryl-tRNA synthetase; 35.1 89 0.003 33.6 8.0 86 478-568 12-98 (455)
153 1ez3_A Syntaxin-1A; three heli 34.8 2.2E+02 0.0074 24.4 10.2 66 497-562 12-77 (127)
154 3trt_A Vimentin; cytoskeleton, 34.5 1.7E+02 0.0059 23.5 7.9 39 478-516 23-61 (77)
155 2odv_A Plectin 1, HD1; plakin 34.4 2.8E+02 0.0097 27.2 10.9 79 457-541 72-151 (235)
156 1ic2_A Tropomyosin alpha chain 34.2 1.9E+02 0.0064 23.9 8.2 32 493-524 9-40 (81)
157 1deq_A Fibrinogen (alpha chain 33.9 1.5E+02 0.0052 31.8 9.3 43 458-500 92-134 (390)
158 1gs9_A Apolipoprotein E, APOE4 33.4 1.8E+02 0.0062 27.2 9.0 12 519-530 100-111 (165)
159 2efr_A General control protein 33.3 3.1E+02 0.011 25.8 12.6 48 467-518 2-49 (155)
160 3hhm_B NISH2 P85alpha; PI3KCA, 32.8 1.7E+02 0.006 30.7 9.6 56 498-560 199-254 (373)
161 2bni_A General control protein 32.5 59 0.002 24.0 4.1 27 535-561 4-30 (34)
162 1vcs_A Vesicle transport throu 32.1 1.9E+02 0.0064 25.0 8.2 55 492-559 40-94 (102)
163 3caz_A BAR protein; thermo-aci 31.8 2.3E+02 0.0077 28.3 9.5 40 529-572 126-165 (294)
164 1deb_A APC protein, adenomatou 31.8 56 0.0019 26.1 4.3 30 538-567 9-38 (54)
165 1uo4_A General control protein 31.5 62 0.0021 23.8 4.1 28 535-562 4-31 (34)
166 1h7c_A Tubulin-specific chaper 31.3 2.7E+02 0.0094 24.5 9.3 39 466-512 5-43 (108)
167 2q13_A DCC-interacting protein 30.9 4.4E+02 0.015 26.8 14.3 86 506-591 115-217 (385)
168 2ke4_A CDC42-interacting prote 30.9 1.6E+02 0.0053 25.8 7.5 34 535-568 58-91 (98)
169 2eqb_B RAB guanine nucleotide 30.6 1.8E+02 0.0061 25.7 7.8 15 462-476 9-23 (97)
170 2p22_C Protein SRN2; endosome, 30.6 2.7E+02 0.0091 26.9 9.8 58 475-537 52-109 (192)
171 3gp4_A Transcriptional regulat 30.1 3E+02 0.01 24.7 10.0 61 463-527 51-111 (142)
172 2efr_A General control protein 29.8 3.6E+02 0.012 25.4 11.9 15 459-473 50-64 (155)
173 2pnv_A Small conductance calci 29.8 72 0.0025 24.4 4.5 29 513-548 11-39 (43)
174 2pnv_A Small conductance calci 29.7 54 0.0018 25.1 3.8 37 474-514 4-40 (43)
175 1u5p_A Spectrin alpha chain, b 29.4 3.2E+02 0.011 24.7 14.8 79 458-537 36-128 (216)
176 4dnd_A Syntaxin-10, SYN10; str 28.8 2.1E+02 0.0072 26.0 8.3 58 468-525 38-95 (130)
177 1ses_A Seryl-tRNA synthetase; 28.5 1.5E+02 0.0052 31.4 8.4 82 478-568 12-93 (421)
178 1sjj_A Actinin; 3-helix bundle 27.9 6.1E+02 0.021 28.3 13.5 82 460-541 406-508 (863)
179 3onj_A T-snare VTI1; helix, HA 27.9 2E+02 0.0068 24.6 7.6 47 489-538 33-82 (97)
180 2oqq_A Transcription factor HY 27.7 1.1E+02 0.0038 23.5 5.1 21 535-555 20-40 (42)
181 2r2v_A GCN4 leucine zipper; co 27.0 83 0.0028 23.2 4.1 27 535-561 4-30 (34)
182 1m1j_A Fibrinogen alpha subuni 26.8 5.6E+02 0.019 28.3 12.3 31 533-567 123-153 (491)
183 3s84_A Apolipoprotein A-IV; fo 26.2 5.1E+02 0.017 26.0 12.3 27 477-503 53-79 (273)
184 1gs9_A Apolipoprotein E, APOE4 25.8 4.1E+02 0.014 24.8 10.2 19 470-488 64-82 (165)
185 3r2p_A Apolipoprotein A-I; amp 25.7 3.5E+02 0.012 25.2 9.5 27 477-503 98-124 (185)
186 2no2_A HIP-I, huntingtin-inter 25.4 3.5E+02 0.012 23.8 12.1 26 466-491 16-41 (107)
187 2xdj_A Uncharacterized protein 25.4 3.1E+02 0.011 23.3 9.0 37 491-527 28-64 (83)
188 1gk4_A Vimentin; intermediate 25.3 1.5E+02 0.0052 24.7 6.2 16 583-598 60-75 (84)
189 3u59_A Tropomyosin beta chain; 25.1 3.2E+02 0.011 23.3 9.1 70 499-568 4-73 (101)
190 1nlw_A MAD protein, MAX dimeri 25.0 48 0.0017 27.8 3.1 56 487-557 22-79 (80)
191 2hy6_A General control protein 24.5 99 0.0034 22.8 4.1 27 536-562 5-31 (34)
192 1kd8_A GABH AIV, GCN4 acid bas 24.5 1.1E+02 0.0038 22.8 4.4 28 536-563 5-32 (36)
193 1kd8_B GABH BLL, GCN4 acid bas 24.3 98 0.0034 23.1 4.1 27 536-562 5-31 (36)
194 2wuj_A Septum site-determining 24.2 69 0.0023 25.2 3.6 28 533-560 28-55 (57)
195 1gd2_E Transcription factor PA 24.0 1.3E+02 0.0045 24.9 5.4 24 540-563 44-67 (70)
196 4hpq_C ATG17, KLTH0D15642P; au 24.0 6.9E+02 0.024 26.8 15.1 29 457-485 248-276 (413)
197 3u1c_A Tropomyosin alpha-1 cha 23.8 3.5E+02 0.012 23.3 9.1 7 465-471 9-15 (101)
198 3q8t_A Beclin-1; autophagy, AT 23.6 3.5E+02 0.012 23.2 13.3 76 493-568 7-82 (96)
199 1wwy_A Thioredoxin-like protei 23.2 4.8E+02 0.017 24.7 11.8 111 242-359 32-155 (171)
200 1jcd_A Major outer membrane li 22.9 99 0.0034 24.5 4.3 27 535-561 14-40 (52)
201 2q5z_A MAZG, hypothetical prot 22.9 99 0.0034 26.9 4.8 22 520-541 72-93 (114)
202 1u4q_A Spectrin alpha chain, b 22.8 5.1E+02 0.017 24.8 14.2 77 460-537 38-128 (322)
203 1l8d_A DNA double-strand break 22.7 3.5E+02 0.012 22.9 8.9 18 538-555 84-101 (112)
204 2wt7_B Transcription factor MA 22.4 1.6E+02 0.0055 25.6 5.9 31 535-565 58-88 (90)
205 3uux_B Mitochondrial division 21.5 4.5E+02 0.015 26.6 9.7 31 540-570 199-229 (242)
206 3hd7_A Vesicle-associated memb 21.5 3.7E+02 0.013 22.7 10.5 36 542-578 43-78 (91)
207 1nkp_B MAX protein, MYC proto- 21.3 98 0.0034 25.5 4.2 54 489-557 25-79 (83)
208 1hci_A Alpha-actinin 2; triple 21.0 3.5E+02 0.012 27.6 9.2 20 457-476 221-240 (476)
209 3qh9_A Liprin-beta-2; coiled-c 20.9 4E+02 0.014 22.9 8.5 33 496-528 15-50 (81)
210 3iv1_A Tumor susceptibility ge 20.7 3.9E+02 0.013 22.7 8.4 36 531-566 38-73 (78)
211 1ci6_A Transcription factor AT 20.7 1.5E+02 0.0053 23.6 5.1 31 527-557 32-62 (63)
212 3thf_A Protein shroom; coiled- 20.6 3.6E+02 0.012 26.4 8.6 63 500-567 15-77 (190)
213 2d4y_A HAP1, flagellar HOOK-as 20.3 5.6E+02 0.019 26.9 10.8 16 515-530 133-148 (463)
214 1s94_A S-syntaxin; three helix 20.3 4.8E+02 0.017 23.8 9.2 78 492-569 38-115 (180)
215 2dq3_A Seryl-tRNA synthetase; 20.2 1.1E+02 0.0037 32.5 5.4 34 497-530 30-63 (425)
216 1ux5_A BNI1 protein; structura 20.1 6.4E+02 0.022 26.1 11.1 56 455-513 256-314 (411)
217 3t97_B Nuclear pore complex pr 20.0 2E+02 0.0067 23.9 5.6 50 521-570 13-62 (65)
No 1
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=99.92 E-value=5.6e-25 Score=213.07 Aligned_cols=137 Identities=23% Similarity=0.348 Sum_probs=118.3
Q ss_pred CcccccccccCceEeecc--c------------------cccccCcccccCcccccccccCC---CCcEEEEEecceeee
Q 006838 219 TEYNYASAMKGAKLVAHN--K------------------EAKGASNILGKDHNKYLRNPCSV---AGKFVVIELGEETLV 275 (629)
Q Consensus 219 ~~~NYAS~d~GAkIl~sn--~------------------eakgasnIL~~nkD~YMLnPCsa---~~kfVVIELcEeI~V 275 (629)
.+.|||+.+.||+|+.+. + ...+|..+|.++. ..+-||+ ..++++|+|++.|.|
T Consensus 26 g~~DyAl~s~Ga~Ii~~~tS~ty~~~~~~~s~~g~~~~~~~~~P~~~L~p~~---~pG~CW~f~g~~g~l~I~Ls~~I~~ 102 (198)
T 4dxt_A 26 GLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDV---HPGNCWAFQGPQGFAVVRLSARIRP 102 (198)
T ss_dssp CCCCTTCGGGTCEEEEEEECCBCCTTHHHHTTTCCCSSCCCCCGGGGGSSCC---STTCSEEEETTCEEEEEEEEEEEEE
T ss_pred CCcCeEcccCCcEEcCcccCCCccCCCceeeecCccccccCCCchheEcCCC---CCcceeecCCCcceeeeecCCeEEE
Confidence 368999999999999732 1 1245666776665 5677887 678999999999999
Q ss_pred cEEEEeecc-------cccCCCCeEEEEeeccCCCCCceeeEEEEeecc-ccceeeeCCCC--ceEEEEEEEEeeccCC-
Q 006838 276 DTVKIANFE-------HYSSNFKEFELSGSLSYPTEVWSPLGKFVATNV-KQLQSFKLPEP--KWVRYLKLNLLSHYGS- 344 (629)
Q Consensus 276 ~~I~IANfE-------~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~N~-R~~Q~F~L~~~--~w~RYLKle~LSHyGs- 344 (629)
+.|+|.|.. ..+|+||+|+|+|...++.++|.+||+|++++. +..|+|.|+++ .++++|+|+|+||||+
T Consensus 103 ~~VtieHi~~~~sp~~~~~SAPKdf~V~g~~~~~~~~~~~Lg~f~Y~~~~~~~QtF~l~~~~~~~~~~V~l~i~SN~G~~ 182 (198)
T 4dxt_A 103 TAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMATYQVVELRILTNWGHP 182 (198)
T ss_dssp EEEEEECCCGGGSGGGCCTTSBCEEEEEEESSSSCCCCEEEEEEECCTTSCSEEEEECSSCCSCCEEEEEEEECCBSSCS
T ss_pred EEEEEEcCchhcccccCcCCCCcEEEEEEEcCCCCCCcEEEEEEEECCCCCcceEEEeCCCCCcceeEEEEEEECCCCCC
Confidence 999999974 679999999999999888889999999999986 46799999876 4899999999999999
Q ss_pred cceeeeeEEEEeccc
Q 006838 345 EFYCTLSVVEVYGVD 359 (629)
Q Consensus 345 E~YC~LS~vrVyG~t 359 (629)
+|+| ||+|||||..
T Consensus 183 ~~TC-lYr~RVhG~~ 196 (198)
T 4dxt_A 183 EYTC-IYRFRVHGEP 196 (198)
T ss_dssp SEEE-ECEEEEEEEC
T ss_pred CcEE-EEEEEEcCEe
Confidence 8999 8999999985
No 2
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A
Probab=99.41 E-value=2.1e-12 Score=117.42 Aligned_cols=132 Identities=19% Similarity=0.200 Sum_probs=104.0
Q ss_pred cccccccccCceEeecccc--ccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeecccccCCCCeEEEEe
Q 006838 220 EYNYASAMKGAKLVAHNKE--AKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSG 297 (629)
Q Consensus 220 ~~NYAS~d~GAkIl~sn~e--akgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~Vsg 297 (629)
+.|||+...||+|+.++.. .-++.+++.+|.+.|--..-.. ..||+|+|.+.+.|..|.|..+ .+|+|+|.+
T Consensus 5 ~~~~a~~~~g~~v~~~ss~~~~~~~~~~iDg~~~T~W~s~g~~-pq~i~I~~~~~~~is~~~i~~~-----~~k~~~ie~ 78 (139)
T 2yc2_A 5 MKDYAREENGGLVVMASCSDERFPPENMLDGKDNTFWVTTGMF-PQEFVLRLESCIRVSKITTLSL-----NVRKLAVEK 78 (139)
T ss_dssp CEETTSSTTSCEECCCSCCBTTSCGGGGGSSCTTCCEECCSSS-CEEEEEEEEEEEEEEEEEEEEE-----SEEEEEEEE
T ss_pred cceehhccCCcEEEEeccCCCCCChhheECCCCCCEEeCCCCC-CeEEEEECCCceEEEEEEEEec-----CCcEEEEEE
Confidence 5799999999999987653 4468899999988777664333 4699999999999999999854 599999999
Q ss_pred eccCCCCCceeeEEEEeeccc-cceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 298 SLSYPTEVWSPLGKFVATNVK-QLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 298 S~~YPt~~W~~LG~F~a~N~R-~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+..--...|+.+++.+..|.. ..|.|.++.+.-+|||||.+++.||. |.| ||+|+|||.+
T Consensus 79 s~~~~p~~w~~i~~~~f~~~~~~~q~~~f~~~~~a~~lrl~i~s~~d~-f~~-iy~~~v~G~~ 139 (139)
T 2yc2_A 79 CDQDKPDQFEKVFEVELANRGDRLQTEVHQVNIRAKYLKFILLQGHGE-FAT-VNRVSVVGGD 139 (139)
T ss_dssp ECSSSCCCCEEEEEEECCCC--CCEEEEEEEEEEEEEEEEEEEEESSS-CCE-EEEEEEEEC-
T ss_pred ecCCCCCceEEEEEEEeecCCCCceEEEccCCCcEEEEEEEEEeccCc-eEE-EEEEEEEecC
Confidence 875322589999776665543 45886554332299999999999999 667 8999999974
No 3
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A
Probab=99.06 E-value=3.2e-09 Score=99.02 Aligned_cols=135 Identities=11% Similarity=0.190 Sum_probs=106.7
Q ss_pred CCCcccccccccCceEeecccc--ccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeecccccCCCCeEE
Q 006838 217 DGTEYNYASAMKGAKLVAHNKE--AKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFE 294 (629)
Q Consensus 217 ~g~~~NYAS~d~GAkIl~sn~e--akgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~ 294 (629)
-.++.|-|....||+|++++.. .-++.+++.+|.+.|-... .....|++|+|.+.+.|..|.|.-+ .+|+|+
T Consensus 10 ~~~~~~~~~~~~g~~v~~ass~~~~~~~~~~iDgn~~T~W~t~-g~~Pq~i~Idf~k~~~is~~~i~~~-----~vk~~~ 83 (153)
T 1tvg_A 10 HMRKIDLCLSSEGSEVILATSSDEKHPPENIIDGNPETFWTTT-GMFPQEFIICFHKHVRIERLVIQSY-----FVQTLK 83 (153)
T ss_dssp ----CBTTCGGGTCEEECCSCCCTTSCGGGGGSSCTTCCEECC-SCSSEEEEEEEEEEEEEEEEEEEEE-----SEEEEE
T ss_pred hhhccccccccCCcEEEEecccCcccCHHHcCcCCCCceEECC-CCCCcEEEEECCCceEEEEEEEEec-----CCEEEE
Confidence 4567899999999999997753 3358899999999888663 2345799999999999999999843 599999
Q ss_pred EEeeccCCCCCceeeEEEEeeccc-cceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 295 LSGSLSYPTEVWSPLGKFVATNVK-QLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 295 VsgS~~YPt~~W~~LG~F~a~N~R-~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
|.++..--...|+.+++.+..+.. ..|.|.++.+.-+|||||.+++-++. |=.||.|+|+|..
T Consensus 84 ie~s~d~~p~~w~~i~e~ef~~~~n~~Q~~~~~~~~~a~~lRl~i~s~~d~--fv~Iy~l~v~G~~ 147 (153)
T 1tvg_A 84 IEKSTSKEPVDFEQWIEKDLVHTEGQLQNEEIVAHGSATYLRFIIVSAFDH--FASVHSVSAEGTV 147 (153)
T ss_dssp EEEECSSSSCCCEEEEEEECCCCTTCCEEEEECCCEEEEEEEEEEEEESSS--CCEEEEEEEEEEE
T ss_pred EEEECCCCCcceEEeEEEEecCCCCcEEEEEcCCCceeEEEEEEEEccccc--EEEEEEEEEEEEE
Confidence 999874211389999877766653 46999887677799999999988876 4668999999985
No 4
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A
Probab=98.82 E-value=1.1e-07 Score=86.11 Aligned_cols=116 Identities=14% Similarity=0.249 Sum_probs=94.1
Q ss_pred ccCcccccCcccccccccC----CCCcEEEEEecceeeecEEEEeecc-cccCCCCeEEEEeeccCCCCCceeeEEEEee
Q 006838 241 GASNILGKDHNKYLRNPCS----VAGKFVVIELGEETLVDTVKIANFE-HYSSNFKEFELSGSLSYPTEVWSPLGKFVAT 315 (629)
Q Consensus 241 gasnIL~~nkD~YMLnPCs----a~~kfVVIELcEeI~V~~I~IANfE-~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~ 315 (629)
.+.+++..|.+.|.-.... ....|++|.|-+...|..|.+.... .....++.|+|++|.. ...|..++.++..
T Consensus 29 ~~~~a~DG~~~T~W~s~~~~~~~~~p~~i~vDLg~~~~i~~v~~~~~~~~~~~~~~~~~I~~S~D--g~~W~~v~~~~~~ 106 (159)
T 3f2z_A 29 HAKHLIDGNIETFWHSRWQGGSDPLPYEIIIDMNHRVKIAQIELLPRGRGSNNPIKVVRFEASED--GTNWESIGQFGFT 106 (159)
T ss_dssp SGGGGSSSCTTCCEECCCTTCCCCSCEEEEEEEEEEEEEEEEEEEECCTTCCCCCCEEEEEEESS--SSSCEEEEEEECC
T ss_pred cHHhcCCCCCCCeEEcCCcCCCCCCCEEEEEECCCceEEEEEEEEecCCCCCCCeeEEEEEEEcC--CCCeEEeEEeecC
Confidence 4778888898888765442 2356999999999999999997643 2356899999999983 5799999999876
Q ss_pred ccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 316 NVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 316 N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+....|.|.+ .|.-+|||||.+++.+|...+..|.-|+|||..
T Consensus 107 ~~~~~~~~~~-~~~~aRYVRi~~~~~~~~~~~~si~Ei~vy~~~ 149 (159)
T 3f2z_A 107 NQDAALKYYV-KSSTARYIKLVIPDGVGNGTVAAIRELDVRGTV 149 (159)
T ss_dssp CCSSCEEECC-CCEEEEEEEEEECSSSSCCSCCEEEEEEEEEEE
T ss_pred CCCccEEEec-CCceEEEEEEEEEeccCCCceEEEEEEEEEcCC
Confidence 6666788876 477899999999999987556668999999985
No 5
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*
Probab=98.77 E-value=7.3e-08 Score=84.01 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=89.7
Q ss_pred cccCcccccCcccccccc-cC---CCCcEEEEEecceeeecEEEEeecc-cccCCCCeEEEEeeccCCCCCceeeEEEEe
Q 006838 240 KGASNILGKDHNKYLRNP-CS---VAGKFVVIELGEETLVDTVKIANFE-HYSSNFKEFELSGSLSYPTEVWSPLGKFVA 314 (629)
Q Consensus 240 kgasnIL~~nkD~YMLnP-Cs---a~~kfVVIELcEeI~V~~I~IANfE-~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a 314 (629)
-.+.+++..|.+.|.-.. |. ....|++|.|.+...|..|.|.... .....++.|+|++|.. ...|..++..+.
T Consensus 26 ~~~~~~~DG~~~t~w~s~~~~~~~~~~~~l~iDLg~~~~i~~v~~~~~~~~~~~~~~~~~i~~S~D--g~~w~~v~~~~~ 103 (150)
T 2j1a_A 26 APASFASDGDMNTFWHSKWSSPAHEGPHHLTLELDNVYEINKVKYAPRQDSKNGRITGYKVSVSLD--GENFTEVKTGTL 103 (150)
T ss_dssp BCGGGGSSSCTTCCEECCCSSSCCCSCCEEEEEEEEEEEEEEEEEECCSSCCTTEEEEEEEEEESS--SSSEEEEEEEEC
T ss_pred CcHHhcCcCCCCCcEEccccCCCCCCCeEEEEECCCCeEEeEEEEeecCCCCCCCEEEEEEEEEcC--CCceEEEEEeeE
Confidence 457788888888776543 42 2457999999999999999997642 2355789999999974 578999998876
Q ss_pred eccccceeeeCCCCceEEEEEEEEeecc-----CCcceeeeeEEEEec
Q 006838 315 TNVKQLQSFKLPEPKWVRYLKLNLLSHY-----GSEFYCTLSVVEVYG 357 (629)
Q Consensus 315 ~N~R~~Q~F~L~~~~w~RYLKle~LSHy-----GsE~YC~LS~vrVyG 357 (629)
.+....|.+.++ +.-+|||||.+++.+ |...|..|.-|+|||
T Consensus 104 ~~~~~~~~~~~~-~~~aryvRi~~~~~~~~~~~~~~~~~~i~Ei~v~G 150 (150)
T 2j1a_A 104 EDNAAIKFIEFD-SVDAKYVRLDVTDSVSDQANGRGKFATAAEVNVHG 150 (150)
T ss_dssp CSSSSCEEEEEE-EEEEEEEEEEEEEEECCC--CTTTCCEESEEEEEC
T ss_pred CCCCceEEEEEC-CeEEEEEEEEEEecccccccCCCceEEEEEEEEeC
Confidence 665566777775 678999999999876 334567799999998
No 6
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=5.8e-07 Score=82.63 Aligned_cols=115 Identities=17% Similarity=0.288 Sum_probs=92.8
Q ss_pred cCcccccCcccccccccC----CCCcEEEEEecceeeecEEEEeecc-cccCCCCeEEEEeeccCCCCCceeeEEEEeec
Q 006838 242 ASNILGKDHNKYLRNPCS----VAGKFVVIELGEETLVDTVKIANFE-HYSSNFKEFELSGSLSYPTEVWSPLGKFVATN 316 (629)
Q Consensus 242 asnIL~~nkD~YMLnPCs----a~~kfVVIELcEeI~V~~I~IANfE-~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~N 316 (629)
+.+++..|.+.|.-..-. ....|++|.|-+...|..|.+.... .-...++.|+|++|.. ...|..++.++..+
T Consensus 40 ~~~a~DG~~~T~W~s~~~~~~~~~p~wi~vDLg~~~~i~~v~~~~r~~~~~~~~~~y~I~~S~D--g~~W~~v~~~~~~~ 117 (169)
T 3ggl_A 40 AKCLIDGDTETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVELLPRGRGSNNPIKVVEFAASED--NVNWTPIGRFGFTN 117 (169)
T ss_dssp GGGGGSSCSSCCEECCCSSCCCCSCEEEEEEEEEEEEEEEEEEEECCTTCCCCCCEEEEEEESS--SSCCEEEEEEECCC
T ss_pred HHhcCCCCCCCceEccCcCCCCCCCEEEEEECCCcEEEeEEEEEecCCCCCCCeeEEEEEEeCC--CCCcEEeEEEEecc
Confidence 778888888887765432 2357999999999999999997643 2257899999999984 57999999998766
Q ss_pred cccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 317 VKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 317 ~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
....|.|.++ |.-+|||||.+++.+|...+..|.-|+|||..
T Consensus 118 ~~~~~~~~f~-~~~aRYVRi~~~~~~~~~~~~si~Ei~vy~~~ 159 (169)
T 3ggl_A 118 QDAALEYYVK-SIKARYIRLTIPDDGGNSTVAAIRELDVKGTI 159 (169)
T ss_dssp CSSCEEECCC-CEEEEEEEEEECSSSSCCSCCEEEEEEEEEEE
T ss_pred CCCcEEEEec-CceEEEEEEEEEeCCCCCceEEEEEEEEEcCC
Confidence 6667888664 77899999999999987556668999999985
No 7
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A
Probab=98.41 E-value=3.1e-06 Score=74.08 Aligned_cols=115 Identities=17% Similarity=0.300 Sum_probs=87.2
Q ss_pred ccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeecccccCCCCeEEEEeeccCCCCCceeeEEEEe--ec
Q 006838 239 AKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVA--TN 316 (629)
Q Consensus 239 akgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a--~N 316 (629)
.-.+.+++..|.+.|-...- . .|+.|.|.+...|..|.|.... -...++.|+|.+|.. ...|..++..+. .+
T Consensus 23 ~~~~~~a~Dg~~~t~W~~~~--~-~~l~vDLg~~~~v~~v~i~~~~-~~~~~~~~~i~~S~D--g~~w~~~~~~~~~~~~ 96 (145)
T 2jda_A 23 GHVPANIADGDVKTRWAASG--E-SWVQLELDKEQSIENILIVPFK-PTERKLKFSIFYSND--GKNWQPLAEGLETSSA 96 (145)
T ss_dssp TBCGGGGGSSCTTCCEEEES--S-EEEEEEEEEEEEEEEEEEEESS-TTTCCEEEEEEEESS--SSSCEEEEEEEECCCS
T ss_pred CCCchhcccCCCCCeECCCC--C-eeEEEECCCceEEEEEEEEecc-CCCceEEEEEEEeCC--CCceEEeeeCccccCC
Confidence 34567777777765543321 2 7999999999999999998753 245799999999874 568999988653 33
Q ss_pred cccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccchH
Q 006838 317 VKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAI 361 (629)
Q Consensus 317 ~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t~v 361 (629)
....+.+.+ ++.-+|||||.+....+.. +..|.-|+|||...+
T Consensus 97 ~~~~~~~~f-~~~~aryvRi~~~~~~~~~-~~~i~Ei~v~g~~~~ 139 (145)
T 2jda_A 97 DKNGEKLTF-TPVTAKYIKLDTFGTDVNN-WSAINEIAINSAAAL 139 (145)
T ss_dssp CSSCEEEEE-EEEEEEEEEEEEEEESSSS-EEEEEEEEESCCCSS
T ss_pred CCccEEEEe-CcccEEEEEEEEECCCCCc-EeEEEEEEEECCCCC
Confidence 345577777 6789999999999987753 566899999998643
No 8
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Probab=98.33 E-value=5e-06 Score=76.29 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=88.5
Q ss_pred cccCcccccCcccccccccC---CCCcEEEEEecceeeecEEEEeecc-cccCCCCeEEEEeeccCCCCCceeeEEEEee
Q 006838 240 KGASNILGKDHNKYLRNPCS---VAGKFVVIELGEETLVDTVKIANFE-HYSSNFKEFELSGSLSYPTEVWSPLGKFVAT 315 (629)
Q Consensus 240 kgasnIL~~nkD~YMLnPCs---a~~kfVVIELcEeI~V~~I~IANfE-~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~ 315 (629)
-.+.+++..|.+.|.-..-. ....|++|.|-+...|..|.+.... .....++.|+|++|. ....|..++..+..
T Consensus 45 ~~~~~a~DG~~~T~W~s~~~~~~~~p~~i~iDLg~~~~I~~v~~~~r~~~~~~~~~~y~I~~S~--DG~~W~~v~~g~~~ 122 (161)
T 4a41_A 45 GLAKFAIDGKENTIWHTKYNPVEELPQSITLELGGSYEINKFTYLPRSGAKNGNITKYELHVSE--DGNNFRKISEGNWD 122 (161)
T ss_dssp CCGGGGGSSCTTCCEECCTTTTCCSCEEEEEEEEEEEEEEEEEEECCSSCCTTCEEEEEEEEES--SSSCEEEEEEEECC
T ss_pred CcHHHcCcCCCCCeEEeCCCCCCCCCEEEEEEcCCCEEEeEEEEEecCCCCCCcEEEEEEEEEC--CCCceEEeeeeeec
Confidence 34778888888887765432 2357999999999999999987632 245679999999997 45789999988766
Q ss_pred ccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEe
Q 006838 316 NVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVY 356 (629)
Q Consensus 316 N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVy 356 (629)
+....|.+.++ |.-+|||||.+++..|. |..|.-|+||
T Consensus 123 ~~~~~~~~~f~-~v~aRYVRi~~~~~~~~--~~si~E~~Vy 160 (161)
T 4a41_A 123 DSGSLKTLKFN-STKATHVKLVALEGVGG--FASAAELNVF 160 (161)
T ss_dssp SSSSCEEEEEE-EEEEEEEEEEEEEEGGG--CCEESEEEEE
T ss_pred CCCcEEEEEeC-CceEEEEEEEEEEccCC--eEEeEeEEEE
Confidence 55567888886 78899999999998885 4457899998
No 9
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=9.5e-06 Score=76.70 Aligned_cols=114 Identities=14% Similarity=0.258 Sum_probs=87.0
Q ss_pred cCcccccCccccccc---ccCCCCcEEEEEecceeeecEEEEeecc-c----ccCCCCeEEEEeeccCCCCCceeeEEEE
Q 006838 242 ASNILGKDHNKYLRN---PCSVAGKFVVIELGEETLVDTVKIANFE-H----YSSNFKEFELSGSLSYPTEVWSPLGKFV 313 (629)
Q Consensus 242 asnIL~~nkD~YMLn---PCsa~~kfVVIELcEeI~V~~I~IANfE-~----fSS~pKdF~VsgS~~YPt~~W~~LG~F~ 313 (629)
+.+++.+|...|--. +......||+|.|-++..|..|.+..-- - -...||+++|+||.. ...|+.||+++
T Consensus 41 ~~~liDgn~~T~Wht~w~~~~~~P~~itIDLg~~~~v~~~~~~~r~~~~~~~~~g~ik~~~I~~S~D--g~~W~~v~~~~ 118 (172)
T 3hnm_A 41 VESLIDNNPGTQWLCRWDVKEPLPYYFVFDMGKEYTLFRFGFANPVAPAAHVWAGTSKAGYVEASID--NENWVKLKDWT 118 (172)
T ss_dssp GGGGSSSCTTSCEECCCSSCCCSCEEEEEEEEEEEEEEEEEEECCCSSCTTSTTCCEEEEEEEEESS--SSCEEEEECCB
T ss_pred HHHcCCCCCCCeEEecCCCCCCCCEEEEEECCCceEEeEEEEEecCCCCcccCCCCeEEEEEEEEeC--CCCeEEeEEEE
Confidence 678999998888765 1233457999999999999999996642 2 257899999999985 57999999998
Q ss_pred eeccccc-eeeeCCCCceEEEEEEEEeeccCC--cceeeeeEEEEecc
Q 006838 314 ATNVKQL-QSFKLPEPKWVRYLKLNLLSHYGS--EFYCTLSVVEVYGV 358 (629)
Q Consensus 314 a~N~R~~-Q~F~L~~~~w~RYLKle~LSHyGs--E~YC~LS~vrVyG~ 358 (629)
..+.+.. +.|.. .|.-+|||||.+.+-|++ +..|.|.-|-..|.
T Consensus 119 ~~~~~~~~~~~~~-~~~~aRYIR~~v~~g~~~~~~~rv~~~e~~~~~~ 165 (172)
T 3hnm_A 119 SPKIGEPNVNMDV-PATQARYIRFVITDTYPTYDGLRVSLGEVYAWGL 165 (172)
T ss_dssp CSSTTCSCEEEEE-EEEEEEEEEEEEEEECCCTTSSCCEECEEEEEEE
T ss_pred ecCCCCceEEeec-CCCceEEEEEEEccCcccccceEEEhhHhhhhhh
Confidence 8886433 33433 456789999999998884 78886665555554
No 10
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=98.01 E-value=6e-05 Score=80.59 Aligned_cols=116 Identities=19% Similarity=0.283 Sum_probs=89.8
Q ss_pred cccCcccccCcccccccccCC-----CCcEEEEEecceeeecEEEEeecc-cccCCCCeEEEEeeccCCCCCcee-eEEE
Q 006838 240 KGASNILGKDHNKYLRNPCSV-----AGKFVVIELGEETLVDTVKIANFE-HYSSNFKEFELSGSLSYPTEVWSP-LGKF 312 (629)
Q Consensus 240 kgasnIL~~nkD~YMLnPCsa-----~~kfVVIELcEeI~V~~I~IANfE-~fSS~pKdF~VsgS~~YPt~~W~~-LG~F 312 (629)
-.+.+++..|.+.|.-..+.. ...|++|.|-+...|..|.|.+.. .....++.|+|++|.. ...|.. +..-
T Consensus 478 ~~~~~a~DG~~~T~w~s~~~~~~~~~~~~~i~vDLg~~~~i~~v~~~~r~~~~~~~~~~y~i~~S~D--g~~w~~~v~~~ 555 (601)
T 1w8o_A 478 GRASNVIDGNPSTFWHTEWSRADAPGYPHRISLDLGGTHTISGLQYTRRQNSANEQVADYEIYTSLN--GTTWDGPVASG 555 (601)
T ss_dssp CCGGGGGSSCTTCCEECCCSSTTCCCSCEEEEEEEEEEEEEEEEEEEECSSCSTTCBCEEEEEEESS--SSSCEEEEEEE
T ss_pred CccceeeCCCCCCcEecCCCCCCCCCCCeEEEEECCCcEEEeEEEEecCCCCCCCceEEEEEEEECC--CCccceeeeeE
Confidence 357788889999888877654 257999999999999999997642 2345899999999983 578996 5543
Q ss_pred EeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEecc
Q 006838 313 VATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGV 358 (629)
Q Consensus 313 ~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~ 358 (629)
+..+....|.+.++ +.-+|||||.+++.+|...|-.|.-|+|||.
T Consensus 556 ~~~~~~~~~~~~f~-~~~aRyvRi~~~~~~~~~~~~~i~Ei~v~g~ 600 (601)
T 1w8o_A 556 RFTTSLAPQRAVFP-ARDARYIRLVALSEQTGHKYAAVAELEVEGQ 600 (601)
T ss_dssp ECCSCSSCEEEEEE-EEEEEEEEEEECCBTTSCSCCEEEEEEEEEC
T ss_pred EEcCCCceEEEEeC-CcceEEEEEEEEEcCCCCceEEEEEEEEEec
Confidence 33343455666665 6789999999999998755555899999995
No 11
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens}
Probab=98.01 E-value=5.3e-05 Score=69.03 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=88.8
Q ss_pred ccccccccCceEeeccccccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEE-eecccccCCCCeEEEEeec
Q 006838 221 YNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKI-ANFEHYSSNFKEFELSGSL 299 (629)
Q Consensus 221 ~NYAS~d~GAkIl~sn~eakgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~I-ANfE~fSS~pKdF~VsgS~ 299 (629)
.|-|.. ..|++-.++ ..-.+.+++.+|.+.|--..-.... |+.|.|-+...|..|.| .+ ...++.|+|.+|.
T Consensus 24 ~NlAl~-~~a~~s~~~-~~g~a~~aiDGn~~T~W~s~~~~~p-~~~VDLg~~~~V~~v~i~~~----r~~v~~y~I~~S~ 96 (149)
T 4a42_A 24 ENLAMK-DETKVEVTS-NNSEANNLRDGNENTLWVPGQEEEK-SVTFDLSKEKDISAIDIVSK----GNSPLKYSIEISN 96 (149)
T ss_dssp EEGGGS-TTCEEEESS-CGGGGGGGGSSCTTSCBCCCSCSSE-EEEEEEEEEEECCEEEEEEC----SSSCCCEEEEEES
T ss_pred cccccC-CCceEEEEc-CCCChHhcEeCCCCCEEEcCCCCCC-eEEEECCCcEEEEEEEEEcC----CCCcEEEEEEEEc
Confidence 476653 235553333 3346888999999988765544334 44999999999999999 33 2239999999998
Q ss_pred cCCCCCceee---EEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEec
Q 006838 300 SYPTEVWSPL---GKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYG 357 (629)
Q Consensus 300 ~YPt~~W~~L---G~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG 357 (629)
+ ...|..+ |+| .+....+.+.+..|.-+|||||.+++. +..|.-|+||+
T Consensus 97 D--G~~W~~~~~~g~~--~~~~~~~~~~f~~pv~aRYVRi~~~~~-----~~si~E~~Vy~ 148 (149)
T 4a42_A 97 D--GTEWTKIVDENNN--EENKAVYSNILKSGKIGRFVRFNFNSE-----NVKIGEIKIYK 148 (149)
T ss_dssp S--SSSCEEEEEETTC--CCCCSEEEEECCTTCEEEEEEEEECSS-----SCCEEEEEEEE
T ss_pred C--CCeEeEeEEccee--CCCCceEEEEcCCCceEEEEEEEEecC-----CcEEEEEEEEC
Confidence 4 5789874 334 234456888888888999999999876 66789999995
No 12
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Probab=97.91 E-value=7.7e-05 Score=69.51 Aligned_cols=127 Identities=11% Similarity=0.137 Sum_probs=93.4
Q ss_pred ccccCceEeecccc-ccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeecccccCCCCeEEEEeeccCCC
Q 006838 225 SAMKGAKLVAHNKE-AKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPT 303 (629)
Q Consensus 225 S~d~GAkIl~sn~e-akgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS~~YPt 303 (629)
....|+++-+++.+ ...|.+.+.+|.+.|-...-.....|+.|.|-+...|+.|.|.. |. ....+.|+|.+|. ..
T Consensus 28 NLA~~k~ataSs~~~~~~a~~AvDGn~~T~W~s~~~~~~~Wi~VDLg~~~~v~~v~i~~-~~-~~~~~~y~IevS~--Dg 103 (161)
T 4a3z_A 28 NIAENKNVSGSNSQSGNPLSNITDGDLSSLWISDNGAMPANATIDLEGNNFVDFLELHF-EK-EGFRFQFKVEVED--ES 103 (161)
T ss_dssp BTTTTCCEEESCBCTTCCGGGGSSSCTTCCEEBGGGCSSEEEEEEEEEEEEEEEEEEEC-SS-TTCCEEEEEEEEC--TT
T ss_pred cccCCCceEEeCCcCCCChhhcCcCCCCCeEEcCCCCCCeEEEEECCCcEEEeEEEEEE-CC-CCceEEEEEEEEc--CC
Confidence 34457777776654 34588899999998887664434579999999999999999953 32 2235789999996 35
Q ss_pred CCceeeEEEEeeccccceeeeCCCCceEEEEEEEEeeccCC-----cceeeeeEEEEe
Q 006838 304 EVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGS-----EFYCTLSVVEVY 356 (629)
Q Consensus 304 ~~W~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGs-----E~YC~LS~vrVy 356 (629)
..|..+-..+.......+.|.++.+.-+|||||.+...-+. ..+ .|+-|+||
T Consensus 104 ~~W~~v~~~t~~~~~~~~~~~~~~~~~aRYVRv~~~~~~~~g~~~~~~~-si~E~~V~ 160 (161)
T 4a3z_A 104 GNRETVLDMTSNTEDNKKSYNIPVKKEISKIHATITGKAPGGSFDQAWA-AIAEIKAM 160 (161)
T ss_dssp CCEEEEEECTTCCSCCCSEEEEEEEEEEEEEEEEEEEECSCSTTTTCCC-EESEEEEE
T ss_pred CCEEEEEEecCCCCCccEEEEcCCCcEEEEEEEEEEecCCCccccCCCC-EEEEEEEe
Confidence 79999877654333345677776577899999999987654 334 58888886
No 13
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens}
Probab=97.90 E-value=6.9e-05 Score=65.00 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=81.4
Q ss_pred cccCcccccCccccccc-ccC--CCCcEEEEEecceeeecEEEEeeccc-ccCCCCeEEEEeeccCCCCCceeeEEEEee
Q 006838 240 KGASNILGKDHNKYLRN-PCS--VAGKFVVIELGEETLVDTVKIANFEH-YSSNFKEFELSGSLSYPTEVWSPLGKFVAT 315 (629)
Q Consensus 240 kgasnIL~~nkD~YMLn-PCs--a~~kfVVIELcEeI~V~~I~IANfE~-fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~ 315 (629)
-.+.+.|..+.+.|... -|. ....|+.|.|-+...|..|.+..... ....++.|+|++|..- .. ..+...+..
T Consensus 27 ~~~~~~~Dg~~~t~w~~~w~~~~~~~~~l~vDLg~~~~i~~v~~~~~~~~~~~~~~~~~i~~S~Dg--~~-~~v~~g~~~ 103 (143)
T 2v72_A 27 DPASSAIDGNINTMWHTKWNGSDALPQSLSVNLGKARKVSSIAITPRTSGNNGFITKYEIHAINNG--VE-TLVAEGTWE 103 (143)
T ss_dssp BCGGGGSSSCTTCCEECCTTSCSCSCEEEEEEEEEEEEEEEEEEECCSSCCTTCEEEEEEEEEETT--EE-EEEEEEECC
T ss_pred ChHHhccCCCCCCceecCCCCCCCCCEEEEEECCCCeEEeEEEEEecccCCCCCEEEEEEEEEcCC--Cc-cEEeEEEEc
Confidence 34667787777766543 342 24579999999999999999987432 3567899999999842 22 555444333
Q ss_pred ccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEe
Q 006838 316 NVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVY 356 (629)
Q Consensus 316 N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVy 356 (629)
+....+.+.++.|.-+|||||.+++.+| .+ -.|.-|+||
T Consensus 104 ~~~~~~~~~f~~p~~aRyvRi~~~~~~~-~~-~~i~Ei~v~ 142 (143)
T 2v72_A 104 ENNLVKTVTFDSPIDAEEIKITAIQGVG-GF-ASIAELNVY 142 (143)
T ss_dssp SSSSCEEEEEEEEEEEEEEEEEEEEEGG-GC-CEESEEEEE
T ss_pred CCCceEEEEeCCCCcEEEEEEEEEEcCC-Ce-EEEEEEEEE
Confidence 3345677788777899999999999988 44 447889988
No 14
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=97.65 E-value=0.00021 Score=80.72 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=89.3
Q ss_pred cccCcccccCcccccccccCC----CCcEEEEEecceeeecEEEEeecc-cccCCCCeEEEEeeccCCCCCceeeEEEEe
Q 006838 240 KGASNILGKDHNKYLRNPCSV----AGKFVVIELGEETLVDTVKIANFE-HYSSNFKEFELSGSLSYPTEVWSPLGKFVA 314 (629)
Q Consensus 240 kgasnIL~~nkD~YMLnPCsa----~~kfVVIELcEeI~V~~I~IANfE-~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a 314 (629)
-.+.+++.+|.+.|--..+++ ...|+.|.|-+...|..|.+..-- .-...++.|+|++|.. ...|..++..+.
T Consensus 613 ~~a~~aiDGn~~T~W~S~w~~~~~~~p~wl~VDLg~~~~V~~V~i~~r~~~~~g~v~~y~I~~S~D--G~~W~~v~~gt~ 690 (737)
T 2v5d_A 613 APASFASDGDMNTFWHSKWSSPAHEGPHHLTLELDNVYEINKVKYAPRQDSKNGRITGYKVSVSLD--GENFTEVKTGTL 690 (737)
T ss_dssp BCGGGGGSSCSSCCEECCCSSSCCCCCCEEEEEEEEEEEEEEEEEECCSSCCTTEEEEEEEEEESS--SSCCCCSEEEEC
T ss_pred CCHHHccCCCCCCceeccccCCCCCCCeEEEEECCCcEEEEEEEEEeccCCCCCceEEEEEEEEcC--CCceEEEEeeee
Confidence 456788889988888766532 357999999999999999998532 1234689999999974 578999988776
Q ss_pred eccccceeeeCCCCceEEEEEEEEeecc-----CCcceeeeeEEEEec
Q 006838 315 TNVKQLQSFKLPEPKWVRYLKLNLLSHY-----GSEFYCTLSVVEVYG 357 (629)
Q Consensus 315 ~N~R~~Q~F~L~~~~w~RYLKle~LSHy-----GsE~YC~LS~vrVyG 357 (629)
.+....+.+.++ +.-+|||||.+++.+ |...+-.|+-|+|||
T Consensus 691 ~~~~~~~~v~f~-~v~ARYVRi~~~~~~~~~~~G~~~~~siaE~~VyG 737 (737)
T 2v5d_A 691 EDNAAIKFIEFD-SVDAKYVRLDVTDSVSDQANGRGKFATAAEVNVHG 737 (737)
T ss_dssp CSSSSCEEEEEE-EEEEEEEEEEEEEEECSSSSCTTTCCEESEEEEEC
T ss_pred cCCCceEEEEeC-CceEEEEEEEEEeeccccccCCCCcEEEEEEEEEC
Confidence 554456777775 678999999999986 344556689999998
No 15
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15
Probab=97.63 E-value=0.0004 Score=63.78 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=89.2
Q ss_pred CceEeecccccc------ccCcccccCcccccc-cccCC----CCcEEEEEecceeeecEEEEeec-ccccCCCCeEEEE
Q 006838 229 GAKLVAHNKEAK------GASNILGKDHNKYLR-NPCSV----AGKFVVIELGEETLVDTVKIANF-EHYSSNFKEFELS 296 (629)
Q Consensus 229 GAkIl~sn~eak------gasnIL~~nkD~YML-nPCsa----~~kfVVIELcEeI~V~~I~IANf-E~fSS~pKdF~Vs 296 (629)
|.++-+++.... .|++...+|.+.|.. ..|.. ...|+.|-|-+...|..|.|.|. ...+...+.|+|.
T Consensus 14 gk~a~aSS~~~~~~~~~~~a~~AvDGn~~t~w~s~sc~~T~~~~~~W~~VDLg~~~~V~~V~i~~r~d~~~~r~~~~~i~ 93 (158)
T 1k12_A 14 RGKATQSAQLRGEHAANSEASNAIDGNRDSNFYHGSCTHSSGQANPWWRVDLLQVYTITSVTITNRGDCCGERISGAEIN 93 (158)
T ss_dssp GSEEEESCBCCSTTGGGCCGGGGGSSCCCCCGGGSCSCCBCSCSSCEEEEEEEEEEEEEEEEEEECSSSCTTTTTTCEEE
T ss_pred CCeeEECcccCCCCcccCCccccCcCCCCCccccccEecCCCCCCCEEEEECCCceEEeEEEEEeCCCcCccccCCEEEE
Confidence 555555554432 488888899888765 46852 45688999999999999999996 4567889999999
Q ss_pred eeccCCCCCc--eeeEEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 297 GSLSYPTEVW--SPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 297 gS~~YPt~~W--~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+++.-....| ...|...........+|.+..+.-+|||||.+. |..++ .|.-|+|||..
T Consensus 94 v~~s~~~~~~~n~~~~~~~~~~~g~~~~i~~~~~~~gRYVrv~~~---g~~~l-sl~EveVyg~~ 154 (158)
T 1k12_A 94 IGQHLASNGVNNPECSVIGSMATGETKTFHCPAPMIGRYVVTYLP---TSESL-HLCEVEVNVDK 154 (158)
T ss_dssp EESSCTTTTTTSCEEEECCCCCTTCEEEEEEEEEEEEEEEEEECC---SSSCC-CEEEEEEEEEE
T ss_pred EEcCCccccccCceeeeecccCCCCEEEEECCCCCeeEEEEEEEC---CCCeE-EEEEEEEeccc
Confidence 8875333334 233443222223446677656788999999996 44344 48999999974
No 16
>2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A {Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A 2yb7_A* 2y8m_A 2yfz_A* 2yg0_A*
Probab=97.60 E-value=0.00041 Score=65.10 Aligned_cols=127 Identities=13% Similarity=0.193 Sum_probs=96.7
Q ss_pred CceEeeccccccc----cCcccccCcccccccccCCCCcEEEEEeccee--eecEEEEeecccccCCCCeEEEEeeccCC
Q 006838 229 GAKLVAHNKEAKG----ASNILGKDHNKYLRNPCSVAGKFVVIELGEET--LVDTVKIANFEHYSSNFKEFELSGSLSYP 302 (629)
Q Consensus 229 GAkIl~sn~eakg----asnIL~~nkD~YMLnPCsa~~kfVVIELcEeI--~V~~I~IANfE~fSS~pKdF~VsgS~~YP 302 (629)
..+|+.+.-...+ ..+++.+|.+.|.-.| .+...|++|.|-++. .+..|....---+.+.+..-++.||.+-.
T Consensus 8 ~~~~~gt~~~~~~~~~~~~~~~DGn~~T~f~~~-~~~~~~i~iDLG~~~~~~l~~f~Y~Pr~~~~~~miGg~fegSnd~D 86 (155)
T 2yfu_A 8 TGTVIGTQGSWNNIGNTIHKAFDGDLNTFFDGP-TANGCWLGLDFGEGVRNVITQIKFCPRSGYEQRMIGGIFQGANKED 86 (155)
T ss_dssp CCEEEECCSCGGGSSCCGGGGGSSCTTCCBCCS-SSSSCEEEEECCTTCCEEEEEEEEECCTTCGGGGTTCEEEEESSTT
T ss_pred ceeEeccCCcccccchhhhheecCCCCcEeEcC-CCCCceEEEECCCCcceEEeeEEEecCcccccCCcEEEEEEECCCC
Confidence 3456665433333 3478889999998765 223469999999988 78888886643467788899999998655
Q ss_pred CCCceeeEEEEeeccccc-eeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccch
Q 006838 303 TEVWSPLGKFVATNVKQL-QSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDA 360 (629)
Q Consensus 303 t~~W~~LG~F~a~N~R~~-Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t~ 360 (629)
-..|..|.++...+.... |...++.+.=+||||+.... ..||.|.-|.+|+.+.
T Consensus 87 f~~~~tL~~I~~~P~~~~~~~v~~~~~k~yRYiRy~~p~----~~~~niAEi~fy~~~~ 141 (155)
T 2yfu_A 87 FSDAVTLFTITSLPGSGTLTSVDVDNPTGFRYVRYLSPD----GSNGNIAELQFFGTPA 141 (155)
T ss_dssp CTTCEEEEECCSCCCTTSCEEEECCCCCEESEEEEECCT----TSTTCBSEEEEEEEEC
T ss_pred CCCeEEEEEecCCCcccccEEEECCCCCcEEEEEEEcCC----CCeEEEEEEEEEeccc
Confidence 689999998876555533 77778777778999998887 3799999999998853
No 17
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9
Probab=97.54 E-value=0.00055 Score=65.52 Aligned_cols=118 Identities=11% Similarity=0.161 Sum_probs=98.7
Q ss_pred ccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEee-c-ccccCCCCeEEEEeeccCCCCCceeeEEEEeec
Q 006838 239 AKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIAN-F-EHYSSNFKEFELSGSLSYPTEVWSPLGKFVATN 316 (629)
Q Consensus 239 akgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IAN-f-E~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~N 316 (629)
--|+..++.++.+.|--.- .....||.|++.+.+.|..|.|.- + .--|=+|+.+.|++.... ..|..++.++..+
T Consensus 38 g~gv~~L~D~~~~TyWqSd-g~qpH~I~i~f~k~v~i~~l~i~vd~~~DeSYtPs~I~v~aG~~~--~dL~ei~~v~l~~ 114 (171)
T 1jhj_A 38 GFGVDQLRDDNLETYWQSD-GSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNF--HNLQEIRQLELVE 114 (171)
T ss_dssp TBSTHHHHSSCTTCCEECC-SSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESST--TSCEEEEEEECSS
T ss_pred CCChHHcCCCCCCeeEccC-CCCCeEEEEEECCCceEEEEEEEECCCCCCCCCcEEEEEEEeCCc--ccceeEEEEEccC
Confidence 3467888888888887664 344689999999999999999865 4 556789999999998754 7899999999999
Q ss_pred cccceeeeCC----CCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 317 VKQLQSFKLP----EPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 317 ~R~~Q~F~L~----~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
..++..+.+. ++.-+.||+|.++++|.+.-=|.|-.|||||..
T Consensus 115 p~Gwv~i~l~~~~~~~~~~~~IQI~I~~nhqnG~DthIR~ikI~G~~ 161 (171)
T 1jhj_A 115 PSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPV 161 (171)
T ss_dssp CEEEEEEECBCTTSSBEEEEEEEEEEEEEGGGCSSCEECEEEEEEEC
T ss_pred CCEEEEEEeccCCCCceeEEEEEEEEeccCCCCCccEEEEEEEEecC
Confidence 9888999984 346777999999999987777889999999984
No 18
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*
Probab=97.52 E-value=0.0012 Score=60.01 Aligned_cols=125 Identities=16% Similarity=0.154 Sum_probs=86.0
Q ss_pred CceEeecccc-ccccCcccccCcccccc-cccCC----CCcEEEEEecceeeecEEEEeeccc--ccCCCCeEEEEeecc
Q 006838 229 GAKLVAHNKE-AKGASNILGKDHNKYLR-NPCSV----AGKFVVIELGEETLVDTVKIANFEH--YSSNFKEFELSGSLS 300 (629)
Q Consensus 229 GAkIl~sn~e-akgasnIL~~nkD~YML-nPCsa----~~kfVVIELcEeI~V~~I~IANfE~--fSS~pKdF~VsgS~~ 300 (629)
|.++-+++.. .-.|++.+.+|.+.|.- ..|.. ...|+.|.|-+...|+.|.|.|... ....++.|+|..++.
T Consensus 15 ~k~ataSS~~~~~~a~~AvDG~~~t~W~~~~ct~t~~~~~~W~~VDLg~~~~v~~V~i~~~~d~~~~~r~~~~~I~vs~~ 94 (153)
T 3lei_A 15 GKQASQSSTAYGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNVANRLSNFDVVLLNE 94 (153)
T ss_dssp TCEEEESCCCTTCCGGGGGSSCCCCCGGGTCSCCCCSBTTCEEEEEEEEEEEEEEEEEEECCSTTCGGGSCSEEEEEECT
T ss_pred CCCeeECCCcCCCCccccccCCCCCccccCccccCCCCCCCeEEEECCCceEEeEEEEEeCCCCcccccceeEEEEEECC
Confidence 5555554432 24578888999888876 46742 4579999999999999999977542 567889999987653
Q ss_pred CCCCCceeeEEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 301 YPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 301 YPt~~W~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+...|...-.+.. +.....++.+ .+.-+|||||.+....+ ++ .|.-|+|||..
T Consensus 95 -dg~~w~~~~~~~~-~~~~~~~~~~-~~~~~RYVri~~~~~~~--~~-sl~EveVyg~~ 147 (153)
T 3lei_A 95 -AKQEVARQHFDSL-NGKAELEVFF-TAKDARYVKVELKTKNT--PL-SLAEVEVFRSA 147 (153)
T ss_dssp -TCCEEEEEEESCC-TTCSEEEEEE-EEEEEEEEEEEECSTTB--CC-CEEEEEEEEBC
T ss_pred -CCCccccceeecC-CCCCeEEEEe-CCeEEEEEEEEeeCCCC--cE-EEEEEEEEcCc
Confidence 3467876422111 1223344555 45789999999976542 34 48999999974
No 19
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.50 E-value=0.00071 Score=73.12 Aligned_cols=116 Identities=9% Similarity=0.149 Sum_probs=89.6
Q ss_pred ccCcccccCcccccccc-cC----CCCcEEEEEecceeeecEEEEeeccc--ccCCCCeEEEEeeccCCCCCc-eeeEEE
Q 006838 241 GASNILGKDHNKYLRNP-CS----VAGKFVVIELGEETLVDTVKIANFEH--YSSNFKEFELSGSLSYPTEVW-SPLGKF 312 (629)
Q Consensus 241 gasnIL~~nkD~YMLnP-Cs----a~~kfVVIELcEeI~V~~I~IANfE~--fSS~pKdF~VsgS~~YPt~~W-~~LG~F 312 (629)
.+.+++..|.+.|--.. +. ....|++|.|-+...|..|.+....- -...+++|+|++|.. ...| +.+...
T Consensus 43 ~~~~~~Dg~~~T~W~s~~~~~~~~~~~~~l~vDLg~~~~i~~v~~~~~~~~~~~~~~~~y~i~~S~D--g~~w~~~v~~~ 120 (656)
T 1k3i_A 43 ECNKAIDGNKDTFWHTFYGANGDPKPPHTYTIDMKTTQNVNGLSMLPRQDGNQNGWIGRHEVYLSSD--GTNWGSPVASG 120 (656)
T ss_dssp CGGGGSSSCTTCCEECCCGGGCCCCSCEEEEEEEEEEEEEEEEEEECCCSSCCTTCBCEEEEEEESS--SSCCCSCSEEE
T ss_pred cHHhcCCCCCCCEEEeCCCCCCCCCCCceEEecCCCcEEEEEEEEEecccCCCCCCeeEEEEEEECC--CCCcceeeeee
Confidence 45678888877665433 31 13579999999999999999987532 234799999999984 5789 888776
Q ss_pred EeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 313 VATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 313 ~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+..+....+.+.++ +.-+|||||.+++..+...|..|.-++|||..
T Consensus 121 ~~~~~~~~~~~~~~-~~~aRyvRi~~~~~~~~~~~~si~E~~v~~~~ 166 (656)
T 1k3i_A 121 SWFADSTTKYSNFE-TRPARYVRLVAITEANGQPWTSIAEINVFQAS 166 (656)
T ss_dssp ECCSSSSCEEEEEE-EEEEEEEEEEECSBTTSCSCCEESEEEEEECS
T ss_pred eecCCCcceeeecC-CcceEEEEEEEecccccCCceeEEEEEEeecc
Confidence 66666666777764 67899999999999987666778999999996
No 20
>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A*
Probab=97.49 E-value=0.0018 Score=59.33 Aligned_cols=111 Identities=20% Similarity=0.203 Sum_probs=81.2
Q ss_pred ccCcccccCcccccc-cccCC----CCcEEEEEecceeeecEEEEeec-ccccCCCCeEEEEeeccCCCCCceeeEEEEe
Q 006838 241 GASNILGKDHNKYLR-NPCSV----AGKFVVIELGEETLVDTVKIANF-EHYSSNFKEFELSGSLSYPTEVWSPLGKFVA 314 (629)
Q Consensus 241 gasnIL~~nkD~YML-nPCsa----~~kfVVIELcEeI~V~~I~IANf-E~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a 314 (629)
.|++....|.+.|.- ++|.. ...|+-|-|-+...|+.|.|.|- .......+.|+|.+++. ..|...+....
T Consensus 34 ~a~~AvDGn~~t~w~~~sct~t~~~~~~W~~VDLg~~~~V~~V~i~~r~d~~~~r~~~~~I~v~~~---~~~~~~~~~~~ 110 (151)
T 2j1v_A 34 DPNRAVDGNRNGNFNSGSVTHTRADNPSWWEVDLKKMDKVGLVKIYNRTDAETQRLSNFDVILYDN---NRNEVAKKHVN 110 (151)
T ss_dssp CGGGGGSSCCCCCGGGTCCCCCCSCTTCEEEEEEEEEEEEEEEEEEECCSSCGGGSCSEEEEEECT---TCCEEEEEEEC
T ss_pred CcCccEeCCCcCcccccccccCCCCCCCEEEEECCCCeEcCEEEEEcCCCccccccCCEEEEEECC---CCCceEeeEEc
Confidence 577888889887765 57852 35688999999999999999986 45567889999998875 24766653222
Q ss_pred eccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEecc
Q 006838 315 TNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGV 358 (629)
Q Consensus 315 ~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~ 358 (629)
.......++.+ .+.-.|||||.+. |...+=.|.-|+|||.
T Consensus 111 ~~~g~~~~~~~-~~~~gRYVrv~~~---g~~~~lsL~EveVyg~ 150 (151)
T 2j1v_A 111 NLSGESVSLDF-KEKGARYIKVKLL---TSGVPLSLAEVEVFRE 150 (151)
T ss_dssp CCSSSEEEEEE-EEEEEEEEEEEES---STTCCCCEEEEEECCC
T ss_pred CCCCCEEEEec-CCeeEEEEEEEEE---CCCCceEEEEEEEEcC
Confidence 22223345555 4578999999996 5554455899999996
No 21
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A*
Probab=97.36 E-value=0.0026 Score=58.71 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=87.7
Q ss_pred cCceEeeccccc-cccCcccccCcccccc-cccCC----CCcEEEEEecceeeecEEEEeecc-cc-cCCCCeEEEEeec
Q 006838 228 KGAKLVAHNKEA-KGASNILGKDHNKYLR-NPCSV----AGKFVVIELGEETLVDTVKIANFE-HY-SSNFKEFELSGSL 299 (629)
Q Consensus 228 ~GAkIl~sn~ea-kgasnIL~~nkD~YML-nPCsa----~~kfVVIELcEeI~V~~I~IANfE-~f-SS~pKdF~VsgS~ 299 (629)
.|.++-+++... -.|++...+|.+.|.- .+|.. ...|+.|-|-+...|..|.|.|-. .- +...+.|+|..++
T Consensus 14 ~~k~ataSS~~~~~~a~~AvDG~~~t~w~~~sct~t~~~~~~W~~VDLg~~~~v~~V~i~nr~d~~~~~r~~~~~I~v~s 93 (153)
T 4gwi_A 14 RGKQASQSSTAHGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNVANRLSNFDVVLLN 93 (153)
T ss_dssp TTCEEEESCCCTTCCGGGGGSSCCCCCGGGTCCCCCCSBTTCEEEEEEEEEEEEEEEEEEECCSTTCGGGSCSEEEEEEC
T ss_pred CCCceEEcCCCCCCCcceeEcCCCCCcccccccccCCCCCCCEEEEECCCCEEEEEEEEEcccCCchhhcccceEEEEEC
Confidence 355555544332 4678888888887765 46742 356889999999999999998853 32 6789999996543
Q ss_pred cCCCCCceeeEEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 300 SYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 300 ~YPt~~W~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
. +...|... .+...+....++|.+ ++.-+|||||.+...- .+| .|.-|+|||..
T Consensus 94 ~-dg~~w~~~-~~~~~~~~~~~~i~~-~~~~gRYVrv~~~~~~--~~l-sL~EveVyg~~ 147 (153)
T 4gwi_A 94 E-AKQEVARQ-HFDSLNGKAELEVFF-TAKDARYVKVELKTKN--TPL-SLAEVEVFRSA 147 (153)
T ss_dssp T-TSCEEEEE-EESCCTTCSEEEEEE-EEEEEEEEEEEECSSS--BCC-CEEEEEEEEBC
T ss_pred C-CCCeeeee-EEecCCCCCEEEEEe-CCceEEEEEEEEEcCC--Cce-EEEEEEEECcc
Confidence 2 34678765 222222345677777 4678999999998653 244 48899999975
No 22
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=97.28 E-value=0.002 Score=63.97 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=88.1
Q ss_pred cCceEeecccccc--c-cCcccccCccccccc-ccC----CCCcEEEEEecceeeecEEEEeec-ccccCCCCeEEEEee
Q 006838 228 KGAKLVAHNKEAK--G-ASNILGKDHNKYLRN-PCS----VAGKFVVIELGEETLVDTVKIANF-EHYSSNFKEFELSGS 298 (629)
Q Consensus 228 ~GAkIl~sn~eak--g-asnIL~~nkD~YMLn-PCs----a~~kfVVIELcEeI~V~~I~IANf-E~fSS~pKdF~VsgS 298 (629)
.|.++-+++.... + |++.+.+|.+.|... .|. ....|+.|.|-+...|..|.|.|. .......+.|+|.++
T Consensus 8 ~~k~a~aSS~~~~~~~~a~~AvDG~~~t~W~s~~c~~t~~~~~~W~~VDLg~~~~v~~V~i~~r~d~~~~~~~~~~i~v~ 87 (293)
T 3cqo_A 8 LRGKATQSARYLHTHGAAYNAIDGNRNSDFEAGSCTHTVEQTNPWWRVDLLEPYIVTSITITNRGDCCPERLNGVEIHIG 87 (293)
T ss_dssp GGSEEEESSBCSSTTCCGGGGGSSCCCCCGGGSCSCCBCSBSSCEEEEEEEEEEEEEEEEEECCSSSCGGGGTTEEEEEE
T ss_pred CCCceeECcCCCCCCCCcCccccCCCCCccCCCceecCCCCCCCEEEEECCCceEEEEEEEEeCCCCccccccCeEEEEe
Confidence 4666666555433 4 888999999888765 574 345688999999999999999986 233456777877765
Q ss_pred ccCCCC---CceeeEEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 299 LSYPTE---VWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 299 ~~YPt~---~W~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
...... .|...+. ..-.....++|.++.+.-+|||||.+.... .++ .|.-|+|||..
T Consensus 88 ~s~d~~~~~n~~~~~~-~~~~~g~~~~~~~~~~~~gRYVrv~~~~~~--~~~-sl~EveVyg~~ 147 (293)
T 3cqo_A 88 NSLQENGVANPRVGVI-SHIPAGISHTISFTERVEGRYVTVLLPGTN--KVL-TLCEVEVHGYR 147 (293)
T ss_dssp SCCGGGGTTSCEEEEE-SCCCTTCEEEEECSSCCEEEEEEEECCSSS--BCC-CCSEEEEEEEE
T ss_pred cCCccCCccCceecce-eecCCCceEEEEeCCCceeeEEEEEecCCC--cce-EEEEEEEEecc
Confidence 543222 3443332 221233457888877889999999987543 344 48999999984
No 23
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=97.20 E-value=0.003 Score=68.55 Aligned_cols=121 Identities=12% Similarity=0.165 Sum_probs=96.6
Q ss_pred cC-ceEeeccccccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeecccccCCCCeEEEEeeccCCCCCc
Q 006838 228 KG-AKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVW 306 (629)
Q Consensus 228 ~G-AkIl~sn~eakgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS~~YPt~~W 306 (629)
.| |+|.+++.. -++.+++.+|.+.|-..+=.....|+.|.|.+...|..|.|.-.=-....++.|+|.++.. ..+|
T Consensus 356 ~~~~~vtaSs~~-~~~~~a~Dgn~~TyW~a~~~~~~~~l~idLg~~~~~n~v~IqE~i~~gqRV~~y~Ve~~~d--gg~W 432 (478)
T 3ues_A 356 SVRCEARTSSAS-AAAAHLVDGNRDTFWRPDADDAAPAITLTLPQPTTINAIVIEEAIEHGQRIEHLRVTGALP--DGTE 432 (478)
T ss_dssp TCCCEEEESSCG-GGGGGGSSSCTTCCBCCCTTCSSCEEEEEEEEEEEEEEEEEEECGGGCCCEEEEEEEEECT--TSCE
T ss_pred ccccceEeeccc-cChhhcccCCCCceEeCCCCCCCeeEEEECCCCcEEEEEEEeecccCCCceEEEEEEEEeC--CCCE
Confidence 45 788877765 7889999999999998876666679999999999999999972212467799999999873 3789
Q ss_pred eeeEEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEec
Q 006838 307 SPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYG 357 (629)
Q Consensus 307 ~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG 357 (629)
+.|..-+.-..+++-.|+ +.-+|||||.+++.-|.- | |+-|+||-
T Consensus 433 ~~va~gttiG~kri~~f~---~v~ar~VRl~I~~s~~~p--~-Ise~~vY~ 477 (478)
T 3ues_A 433 RVLGQAGTVGYRRILRFD---DVEVSSVTLHVDGSRLAP--M-ISRAAAVR 477 (478)
T ss_dssp EEEEEESCCTTCEEEEEE---EEEEEEEEEEEEEESSSC--C-EEEEEEEC
T ss_pred EEEEeccccCceEEEEeC---CeeeEEEEEEEeccCCCe--E-EEEEEEEe
Confidence 999876555555566675 789999999999887743 4 89999983
No 24
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.0019 Score=69.84 Aligned_cols=128 Identities=15% Similarity=0.222 Sum_probs=97.6
Q ss_pred ccccccccCceEeecccc--ccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeecccccCCCCeEEEEee
Q 006838 221 YNYASAMKGAKLVAHNKE--AKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGS 298 (629)
Q Consensus 221 ~NYAS~d~GAkIl~sn~e--akgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS 298 (629)
.|.| .||+|-+++.. .-.|++++.+|.+.|-...=.....|+.|.|-+...|+.|.|.-.--....++.|+|.+|
T Consensus 325 ~NLA---~~~~vtASS~~~~~~~~~~a~Dgd~~TyW~a~~~~~~~wl~vDLg~~~~vn~V~lqe~i~~gqrv~~y~Ve~s 401 (469)
T 3eyp_A 325 TNLL---RGAKVKATNVRGAKYSPEKMLDNEKNTYFAGKDGEVKADIIFTLPKTIEFDCLMIEEVIELGHRTTKWSVEYT 401 (469)
T ss_dssp CCTT---TTCEEEESSCCCGGGCGGGGGSCCSSCCEECCTTCCCEEEEEEEEEEEEEEEEEEEECGGGCSCEEEEEEEEE
T ss_pred cchh---cCCceEEeeccCCCCChhhcccCCCCceEeCCCCCCCcEEEEECCCCcEEeEEEEeecccCCCCeEEEEEEEE
Confidence 3665 47888877644 357899999999999877766556799999999999999999743335678999999999
Q ss_pred ccCCCCCceeeEEEE---eeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 299 LSYPTEVWSPLGKFV---ATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 299 ~~YPt~~W~~LG~F~---a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
. ...+|..|..-+ ....+..-.|+ +.-+|||||.+++.-|. .| |+-|+||+..
T Consensus 402 ~--DG~~W~~v~~gt~~~tiG~kr~~~f~---~v~aryVRl~i~~~~g~--p~-Ise~~Vy~a~ 457 (469)
T 3eyp_A 402 V--DGKNWITIPEATDKQAIGHKWIVRLA---PVKAKQVRLRIQDGKAC--PA-IHTFGVYKQS 457 (469)
T ss_dssp S--SSSCCEECGGGSSBCCCTTCEEEEEE---EEEEEEEEEEEEEESSS--CE-EEEEEEECCC
T ss_pred c--CCCceEEEEecccccCCCceeEEecC---CeeEEEEEEEEEcCCCC--eE-EEEEEEEcCC
Confidence 8 356899986543 11123334454 67899999999988773 45 8999999875
No 25
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A
Probab=97.09 E-value=0.0034 Score=72.88 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=92.8
Q ss_pred cCceEeeccc-cccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeecccccCCCCeEEEEeeccCCCCCc
Q 006838 228 KGAKLVAHNK-EAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVW 306 (629)
Q Consensus 228 ~GAkIl~sn~-eakgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS~~YPt~~W 306 (629)
.|.+|-+++. +.-.|++.+.+|...|--.. ....|+.|.|-+...|..|.|.+ -...++.|+|.+|. ....|
T Consensus 29 ~gk~vTASS~~~g~~p~nAvDGn~~T~WsS~--~~~qWLqVDLG~~~~V~~V~l~~---~~~~v~~Y~Ie~S~--DG~~W 101 (914)
T 4a4a_A 29 EGVTVTAKGNTEGNTADLAIDGDLSTYWESS--NDYKWIEVDLGGIYELSKIEIFN---KDEAVYKYNIYASE--DGENF 101 (914)
T ss_dssp SSCEEEESCCCTTCCGGGGSSSCTTCCEECC--SSCCEEEEEEEEEEEEEEEEEEC---SSSSCEEEEEEEES--SSSCC
T ss_pred CCCceEEeccCCCCcHHHeECCCCCCeEecC--CCCceEEEECCCeEEEEEEEEEe---cCCceEEEEEEEEc--CCCCe
Confidence 5677776664 23568888888888887776 34579999999999999999965 34568899999998 46899
Q ss_pred eeeEEEEeecc--ccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 307 SPLGKFVATNV--KQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 307 ~~LG~F~a~N~--R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
..+..-+.... ...+...+ .+.-+|||||.++..-+...+. |+-|+|||..
T Consensus 102 t~v~~~t~~~~~~~~~d~v~f-~pv~ARYVRL~~t~~~~~~~~S-I~EfeVyG~~ 154 (914)
T 4a4a_A 102 NKIAYKNNDNVSDSNGNMHTI-DNVRAGKIRIDVVQNSNSDRVN-IAEINVFGKN 154 (914)
T ss_dssp EEEEEECSCCCCCTTCEEEEE-EEEEEEEEEEEEEEETTCSSCE-ESEEEEEEEE
T ss_pred EEEEEcccCccCCCccceEEe-CCceEEEEEEEEEecCCCCceE-EEEEEEEcCC
Confidence 99987543221 11244455 5678999999999887766665 8999999974
No 26
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=96.93 E-value=0.0045 Score=61.42 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=87.6
Q ss_pred CceEeecccc-ccccCcccccCccccccc-ccCC----CCcEEEEEecceeeecEEEEeecccccCCCCeEEEEeeccCC
Q 006838 229 GAKLVAHNKE-AKGASNILGKDHNKYLRN-PCSV----AGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYP 302 (629)
Q Consensus 229 GAkIl~sn~e-akgasnIL~~nkD~YMLn-PCsa----~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS~~YP 302 (629)
|.++-+++.. .-.|++.+.+|.+.|.-. .|.. ...|+.|.|-+...|..|.|.|-.......+.|+|.+++.-.
T Consensus 157 ~k~~taSS~~~~~~a~~AvDG~~~t~W~~~~c~~t~~~~~~W~~VDLg~~~~v~~V~i~~~d~~~~~~~~~~i~vs~s~~ 236 (293)
T 3cqo_A 157 KGKATQSSLFESGIAYNAIDGNQANNWEMASCTHTKNTMDPWWRMDLSQTHRVFSVKVTNRDSFEKRINGAEIRIGDSLD 236 (293)
T ss_dssp GSEEEESCCCTTCCGGGGGSSCCCCSGGGTCCCCCCSEESCEEEEEEEEEEEEEEEEEECCSSSGGGGTTEEEEEESCCG
T ss_pred CcceecCCCCCCCCccccccCCCCCccccCccccCCCCCCCEEEEECCCeEEEeEEEEEccCccccccCCeEEEEeccCc
Confidence 4455444432 246778888998888764 5743 256899999999999999999875567789999999986433
Q ss_pred ---CCCceeeEEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 303 ---TEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 303 ---t~~W~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
...|...+.+.. ......+|.+ .+.-+|||||.+...- .+ -.|.-|+|||..
T Consensus 237 ~~~~~n~~~~~~~~~-~~~~~~~~~~-~~~~~RYVrv~~~~~~--~~-~sl~EveVyg~~ 291 (293)
T 3cqo_A 237 NNGNHNPRCAVITSI-PAGASTEFQC-NGMDGRYVNIVIPGRE--EY-LTLCEVEVYGSV 291 (293)
T ss_dssp GGGTTSCEEEEECCC-CTTCEEEEEE-EEEEEEEEEEECTTSE--EC-CCCSEEEEEEEC
T ss_pred cccccCceeeeeccc-CCCCEEEEEc-CCeeEEEEEEEecCCC--cc-EEEEEEEEeccC
Confidence 457776543332 2223344544 4678999999987542 33 448999999974
No 27
>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae}
Probab=96.82 E-value=0.018 Score=52.78 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=78.0
Q ss_pred ccCcccccCcccccc-cccCC----CCcEEEEEecceeeecEEEEeec-ccccCCCCeEEEEeeccCCCCCceeeEEEEe
Q 006838 241 GASNILGKDHNKYLR-NPCSV----AGKFVVIELGEETLVDTVKIANF-EHYSSNFKEFELSGSLSYPTEVWSPLGKFVA 314 (629)
Q Consensus 241 gasnIL~~nkD~YML-nPCsa----~~kfVVIELcEeI~V~~I~IANf-E~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a 314 (629)
.|++....|.+.+.. .+|.. ...|+-|-|-+.-.|+.|.|.|- .......+.|+|.+++.-....|.. .+..
T Consensus 31 ~a~~AvDG~~~t~w~~~sct~T~~~~~~Ww~VDLg~~~~V~~V~i~~r~d~~~~r~~~~~I~vg~s~d~~~~~~--~~~~ 108 (148)
T 2j22_A 31 FSRLAVDGNKNGDYGHHSVTHTKEDSPSWWEIDLAQTEELEKLIIYNRTDAEIQRLSNFDIIIYDSNDYEVFTQ--HIDS 108 (148)
T ss_dssp CGGGGGSSCCCCCGGGTCCCCCCSCTTCEEEEEEEEEEEEEEEEEEECCSSCGGGSEEEEEEEECTTSCEEEEE--EEEE
T ss_pred ccCccEeCCCCCcccccceeccCCCCCCEEEEECCCCEEeeEEEEEecCCCcccccCCEEEEEEeCCCCCcccc--eecC
Confidence 577778888876654 57843 35688999999999999999985 3445678889988754322223431 3333
Q ss_pred eccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEecc
Q 006838 315 TNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGV 358 (629)
Q Consensus 315 ~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~ 358 (629)
. .....+|.+ .+.-.|||+|.+. |..++=.|.-|+|||.
T Consensus 109 ~-~~~~~~~~~-~~~~gRYVrv~~~---g~~~~lsL~EveVyg~ 147 (148)
T 2j22_A 109 L-ESNNLSIDL-KGLKGKKVRISLR---SAGIPLSLAEVEVYTY 147 (148)
T ss_dssp C-SSSEEEEEE-EEEEEEEEEEEES---STTCCCCEEEEEEEEC
T ss_pred C-CCCEEEEEe-CCeeEEEEEEEEE---CCCCceEEEEEEEEec
Confidence 2 234566666 4578999999996 5555666899999995
No 28
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9
Probab=96.80 E-value=0.013 Score=58.20 Aligned_cols=129 Identities=9% Similarity=-0.022 Sum_probs=101.3
Q ss_pred eeccccccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEe-ecc-cccCCCCeEEEEeeccCCCCCceeeE
Q 006838 233 VAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIA-NFE-HYSSNFKEFELSGSLSYPTEVWSPLG 310 (629)
Q Consensus 233 l~sn~eakgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IA-NfE-~fSS~pKdF~VsgS~~YPt~~W~~LG 310 (629)
++++|.--|+..++.++.+.|--. |....+|+.|++.+.+.|..|.|- ++. =-|=+|+.+.|.+-... ..+..+.
T Consensus 63 vSS~K~g~gV~~L~D~s~~TyWQS-DG~qPH~ItI~f~k~v~I~~L~iyvD~~~DeSYtPs~I~V~aG~~~--~dL~e~~ 139 (221)
T 1gqp_A 63 PSSFKLGNPVDFALDDNYDTFWQS-DGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSP--SDARFYK 139 (221)
T ss_dssp ESCCCTTCCGGGGSSSCTTCCEEC-CSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESST--TTCEEEE
T ss_pred EecCCCcCCHHHhcCCCccceecc-CCCCCeEEEEEEcCCceEEEEEEEECCCCCCCCCCEEEEEEEeCCc--CcceEEE
Confidence 456666678999999999999888 544578999999999999999884 454 46779999999987753 4667788
Q ss_pred EEEeeccccceeeeCCC------CceEEEEEEEEeeccCCcceeeeeEEEEeccchHHHH
Q 006838 311 KFVATNVKQLQSFKLPE------PKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIERM 364 (629)
Q Consensus 311 ~F~a~N~R~~Q~F~L~~------~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t~vE~~ 364 (629)
..+-.+..++....+.. +.++.||+|.++++|-+.-=|-|-.|||||...-..+
T Consensus 140 ~v~l~~p~GWv~i~l~d~~~~~~~l~~~~IQI~I~~nhqnGrDThIRqIkI~Gp~~~~~~ 199 (221)
T 1gqp_A 140 MLEVRNVNGWVALRFLDNREDDQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVPSNEPHQ 199 (221)
T ss_dssp EEEEEECEEEEEECCC--------EEEEEEEEEEEEESTTCSSCEESCEEEEEEC-----
T ss_pred EEEecCCCEEEEEEccCCCCCCCeeEEEEEEEEEeeccCCCCccEEEEEEEEccCCccch
Confidence 88888888888777752 2688999999999998877799999999999754443
No 29
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A
Probab=96.18 E-value=0.014 Score=53.28 Aligned_cols=90 Identities=12% Similarity=0.204 Sum_probs=65.7
Q ss_pred CcEEEEEecceeeecEEEEeeccc--ccCCCCeEEEEeeccCCCCCceeeEE--------EEeec-cccceeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIANFEH--YSSNFKEFELSGSLSYPTEVWSPLGK--------FVATN-VKQLQSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE~--fSS~pKdF~VsgS~~YPt~~W~~LG~--------F~a~N-~R~~Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|.+.-... ...-++.|+|..|.. ...|..+-. |.... ....+.-.+..|..
T Consensus 57 ~qwlqVDLg~~~~vt~v~tqg~~~~~~~~~v~~y~i~~S~D--g~~W~~~~~~~~~~~~~F~GN~d~~~~~~~~l~~pi~ 134 (158)
T 3bn6_A 57 SEWLQIDLGSQKRVTGIITQGARDFGHIQYVAAYRVAYGDD--GVTWTEYKDPGASESKIFPGNMDNNSHKKNIFETPFQ 134 (158)
T ss_dssp TCCEEEEEEEEEEEEEEEEECEEETTEEEEEEEEEEEEESS--SSSCEECCCTTCSSCCCEECCSSSSCCEEEEEEEEEE
T ss_pred CCEEEEeCCCceEEEEEEeeCCCCCCCCceEEEEEEEEECC--CCceEEEEcCCCCceeeeeccCCCCeEEEEeCCCCEE
Confidence 469999999999999999864322 124689999999884 567887643 43321 12334455556789
Q ss_pred EEEEEEEEeeccCCcceeeeeEEEEec
Q 006838 331 VRYLKLNLLSHYGSEFYCTLSVVEVYG 357 (629)
Q Consensus 331 ~RYLKle~LSHyGsE~YC~LS~vrVyG 357 (629)
+|||||..++.|| +-| -+|+|||
T Consensus 135 ARyVRi~p~~~~~--~~~--lR~ElyG 157 (158)
T 3bn6_A 135 ARFVRIQPVAWHN--RIT--LRVELLG 157 (158)
T ss_dssp EEEEEEEEEEEES--SCE--EEEEEEE
T ss_pred EEEEEEEEEEcCC--eeE--EEEEEEc
Confidence 9999999999987 456 5999999
No 30
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A
Probab=95.57 E-value=0.034 Score=51.02 Aligned_cols=92 Identities=13% Similarity=0.175 Sum_probs=67.6
Q ss_pred CcEEEEEecceeeecEEEEeeccc--ccCCCCeEEEEeeccCCCCCceeeE--------EEEeeccc-cceeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIANFEH--YSSNFKEFELSGSLSYPTEVWSPLG--------KFVATNVK-QLQSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE~--fSS~pKdF~VsgS~~YPt~~W~~LG--------~F~a~N~R-~~Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|.+.-... ...-++.|+|..|. +...|..+- .|.....+ ....-.++.|.-
T Consensus 56 ~qwLqVDLg~~~~Vt~v~tqG~~~~~~~~~v~~y~l~yS~--Dg~~W~~~~~~~~~~~~vF~GN~d~~t~v~~~l~~pi~ 133 (160)
T 1czt_A 56 KQWLEIDLLKIKKITAIITQGCKSLSSEMYVKSYTIHYSE--QGVEWKPYRLKSSMVDKIFEGNTNTKGHVKNFFNPPII 133 (160)
T ss_dssp TCCEEEEEEEEEEEEEEEEECEEETTEEEEEEEEEEEEES--SSSSCEECCCTTCSSCCCEECCSSSSCCEEEEEEEEEE
T ss_pred CcEEEEeCCCcEEEEEEEEeCcCCCCcccEEEEEEEEEEC--CCCcEEEEEcCCCcccccccCcCCCCceEEEecCCCEE
Confidence 469999999999999999864321 24467899999987 457788763 35542222 234455666789
Q ss_pred EEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 331 VRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 331 ~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+|||||..++.|| +-| -+|+|||-.
T Consensus 134 ARyvRi~p~~w~~--~~~--~R~ElyGc~ 158 (160)
T 1czt_A 134 SRFIRVIPKTWNQ--SIT--LRLELFGCD 158 (160)
T ss_dssp EEEEEEEEEEEES--SCE--EEEEEEEEE
T ss_pred EEEEEEEEEEeCC--ceE--EEEEEEeEe
Confidence 9999999999987 456 699999964
No 31
>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood coagulation, calcium, DIS mutation, disulfide bond, glycoprotein, hemophilia; 1.07A {Homo sapiens} SCOP: b.18.1.2 PDB: 3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A
Probab=95.17 E-value=0.062 Score=49.43 Aligned_cols=92 Identities=21% Similarity=0.251 Sum_probs=68.0
Q ss_pred CcEEEEEecceeeecEEEEeecc--cccCCCCeEEEEeeccCCCCCceeeE------EEEeeccc-cceeeeCCCCceEE
Q 006838 262 GKFVVIELGEETLVDTVKIANFE--HYSSNFKEFELSGSLSYPTEVWSPLG------KFVATNVK-QLQSFKLPEPKWVR 332 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE--~fSS~pKdF~VsgS~~YPt~~W~~LG------~F~a~N~R-~~Q~F~L~~~~w~R 332 (629)
..|+-|.|-+...|..|.+.-.. ....-++.|.|..|.. ...|...- .|.....+ ......++.|..+|
T Consensus 58 ~qwLqVDLg~~~~VtgV~tqG~~~~~~~~~v~~y~l~yS~D--g~~W~~~~~~~~~~vF~GN~d~~t~v~~~l~~pi~AR 135 (159)
T 3hny_M 58 KEWLQVDFQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQD--GHQWTLFFQNGKVKVFQGNQDSFTPVVNSLDPPLLTR 135 (159)
T ss_dssp TCCEEEEEEEEEEEEEEEEECEEETTEEEEEEEEEEEEESS--SSSCEECEETTEECCEECCSSSSSCEEEEEEEEEEEE
T ss_pred CCeEEcccCCcEEEEEEEeecCCCCCccceEEEEEEEEEEC--CCcEEEEecCCceEeeeccCCCCcEEEEECCCCcEEE
Confidence 46999999999999999987421 2345588999998874 57898763 35543222 23455566788999
Q ss_pred EEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 333 YLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 333 YLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
||||.-++.|| +-| -+|+|||-+
T Consensus 136 yvRi~P~~w~~--~i~--lR~El~GC~ 158 (159)
T 3hny_M 136 YLRIHPQSWVH--QIA--LRMEVLGCE 158 (159)
T ss_dssp EEEEEEEEEES--SCC--BEEEEEEEE
T ss_pred EEEEEEEEeCC--ccE--EEEEEEccC
Confidence 99999999987 455 689999953
No 32
>1o59_A Allantoicase; YIR029W, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics, hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: b.18.1.22 b.18.1.22 PDB: 1sg3_A
Probab=95.09 E-value=0.11 Score=54.72 Aligned_cols=131 Identities=18% Similarity=0.300 Sum_probs=90.5
Q ss_pred cccccccccCceEeeccccccc-cCcccccCccccc---------ccccCCCCcEEEEEecc-eeeecEEEEeecccccC
Q 006838 220 EYNYASAMKGAKLVAHNKEAKG-ASNILGKDHNKYL---------RNPCSVAGKFVVIELGE-ETLVDTVKIANFEHYSS 288 (629)
Q Consensus 220 ~~NYAS~d~GAkIl~sn~eakg-asnIL~~nkD~YM---------LnPCsa~~kfVVIELcE-eI~V~~I~IANfE~fSS 288 (629)
.+|-||...|++|++.|.+--+ +.|+|.+..-++| +.|-.. -|+||.|.- .-.|+.|+|---=|=-.
T Consensus 207 ~~DLaa~~~GG~vv~~SD~~fg~~~NLl~Pg~g~~MgDGWETrRrR~pG~~--DW~IvrLG~~~G~I~~ieVDTa~FkGN 284 (355)
T 1o59_A 207 IIDLAYVCNGAVALKYSDQHFGSVDNLLLPGRGHDMSDGWETKRSRQPGHT--DWAVIQLGRESSFIEKIIVDTAHFRGN 284 (355)
T ss_dssp CEETTCGGGTCEEEEESCCSEECGGGGGCSSSCSSGGGSEECCCCCSTTCC--EEEEEECSSCCSEEEEEEEECTTCSSS
T ss_pred ccceeccccCCEEEEEecccccCHHHccCCCccccccccceecccCCCCCc--cEEEEEccCCCcEEEEEEEECCcccCC
Confidence 4799999999999999977655 8999999888888 444221 599999997 88888888844334445
Q ss_pred CCCeEEEEeecc--CCC-----CCceeeEEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEecc
Q 006838 289 NFKEFELSGSLS--YPT-----EVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGV 358 (629)
Q Consensus 289 ~pKdF~VsgS~~--YPt-----~~W~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~ 358 (629)
.|..++|.+... .|. ..|..|=.-+.-.....+.|.+..+.-+-.|||.+.=-=| |+++||||.
T Consensus 285 ~P~~vsi~a~~~~~~~~~~~~~~~W~~llp~t~l~pd~~H~f~~~~~~~~THvRL~I~PDGG------VaRlRv~G~ 355 (355)
T 1o59_A 285 FPQFITVEGCLKESESSENTGEGTWVELVGKSKTGPDKEHVYEIRKSIRVSHVKLTIIPDGG------VKRIRVWGY 355 (355)
T ss_dssp CCSEEEEEEECC-----------CEEEEEEEEECCTTCEEEEEEEEECCCSEEEEEEESCCE------ECEEEEEEC
T ss_pred CCCeEEEEEEecCCCcccccccCCCeEeccCcccCCCceeeeecCCCCceEEEEEEEECCCc------eEEEEEeeC
Confidence 567788887532 111 2597643333333334466877444455678888754433 799999995
No 33
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=95.04 E-value=0.0039 Score=74.58 Aligned_cols=116 Identities=10% Similarity=0.103 Sum_probs=0.0
Q ss_pred cCcccccCcccccccc-cCC----CCcEEEEEecceeeecEEEEeecc---cccCCCCeEEEEeeccCCCCCceeeEEEE
Q 006838 242 ASNILGKDHNKYLRNP-CSV----AGKFVVIELGEETLVDTVKIANFE---HYSSNFKEFELSGSLSYPTEVWSPLGKFV 313 (629)
Q Consensus 242 asnIL~~nkD~YMLnP-Csa----~~kfVVIELcEeI~V~~I~IANfE---~fSS~pKdF~VsgS~~YPt~~W~~LG~F~ 313 (629)
+.+.+.+|...|--.. |.. +..|++|.|-+...|..|.+..-. -....++.++|++|.. ....|..+...+
T Consensus 1246 A~nAIDGD~~T~WHSaWs~ss~~~PgqWLqVDLGe~~tIsgf~YqpRqdg~~~NG~VksYkIeVS~d-DG~nWttVa~GT 1324 (1376)
T 2zxq_A 1246 ADLAQDGNDSTHWHTSWSENAVGNGTAWYQFNLNEPTTINGLRYLPRSGGMNANGKIKGYKITLTLA-DGTTKDVVTDAE 1324 (1376)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCcCCCCCeEEecccccCCCCCceEEEEEcCCcEEEEEEEEecCccCCCCCCceEEEEEEEECC-CCCeEEEEEeeE
Confidence 7788888887775543 221 227999999999999999986532 2345799999999972 247899886544
Q ss_pred eeccccceeeeCCCCceEEEEEEEEeeccCCcc-----eeeeeEEEEecc
Q 006838 314 ATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEF-----YCTLSVVEVYGV 358 (629)
Q Consensus 314 a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~-----YC~LS~vrVyG~ 358 (629)
..+....|.+.++.|.-+|||||..++-+|..- |..++-|+|||.
T Consensus 1325 Fsgn~t~kti~Fd~PVkARYVRf~ats~~gg~g~~~Nk~aSIAEf~Vyg~ 1374 (1376)
T 2zxq_A 1325 FSTTTMWQKASFDAVENVTAVRLTVLSSAGQSDSQANKFASAAELRLTTD 1374 (1376)
T ss_dssp --------------------------------------------------
T ss_pred EcCCCceEEEEeCCCceEEEEEEEEEEccCCCCccccceEEEEEEEEecc
Confidence 445556788888878889999999999888633 666899999985
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.14 E-value=0.69 Score=49.38 Aligned_cols=106 Identities=20% Similarity=0.123 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh----------hhhh----HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQ----------DVFP----ELDREITRISLLLEKSKLELEELVKWRET 522 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~----------~~f~----~l~~el~~~~~~Lek~~aeI~~L~e~K~~ 522 (629)
++....|-+++...|.....+...+++.-++|. +.+. +++.+.......++..+.++.+.++..+.
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETED 541 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhh
Confidence 355666667777777777777777777766666 2222 22222222223333334444444444444
Q ss_pred HhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 523 MERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 523 ~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
++++..+++.=-.....++..+.+|+..++.++.++.++.
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455544433334445667777778888877777766543
No 35
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A
Probab=94.08 E-value=0.16 Score=49.72 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=67.1
Q ss_pred CcEEEEEecceeeecEEEEeecc----cccCCCCeEEEEeeccCCCCCceeeE------EEEeeccc-cceeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIANFE----HYSSNFKEFELSGSLSYPTEVWSPLG------KFVATNVK-QLQSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE----~fSS~pKdF~VsgS~~YPt~~W~~LG------~F~a~N~R-~~Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|.+.-.- ....-++.|.|..|. +...|..+- .|.....+ ....-.++.|..
T Consensus 54 ~qWLQVDLg~~~~VtgV~tQG~~~~~~~~~~~VtsY~l~yS~--DG~~W~~y~~~~~~kvF~GN~D~~t~v~~~l~~Pi~ 131 (218)
T 4deq_A 54 REWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSS--NGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLI 131 (218)
T ss_dssp TCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEES--SSSSCEECEETTEECCEECCSSSSSCEEEEEEEEEE
T ss_pred CCeEEEeCCCcEEEEEEEEEeccCCCCCccceEEEEEEEEEe--CCCceEEeecceeeecccCcCCCCceEEEeCCCCEE
Confidence 46999999999999999876421 123458899999887 357898764 35442222 224445566889
Q ss_pred EEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 331 VRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 331 ~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+|||||.-++.|| +-| -+|+|||-.
T Consensus 132 ARyVRi~P~~w~~--~i~--lRvElyGC~ 156 (218)
T 4deq_A 132 TRFVRIKPATWET--GIS--MRFEVYGCK 156 (218)
T ss_dssp EEEEEEEEEEEES--SCC--BEEEEEEEC
T ss_pred EEEEEEEeeeecC--CcE--EEEEEEeec
Confidence 9999999999987 555 699999985
No 36
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A*
Probab=93.93 E-value=0.15 Score=50.71 Aligned_cols=92 Identities=11% Similarity=0.152 Sum_probs=69.5
Q ss_pred CcEEEEEecceeeecEEEEeecccccCCCCeEEEEeeccCCCCCceeeE---EEEeecccc-ceeeeCCCCceEEEEEEE
Q 006838 262 GKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLG---KFVATNVKQ-LQSFKLPEPKWVRYLKLN 337 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS~~YPt~~W~~LG---~F~a~N~R~-~Q~F~L~~~~w~RYLKle 337 (629)
..|+-|.|-+...|..|.+.-..-...-++.|+|..|.. ...|...- .|.....+. ...-.++.|.-+|||||.
T Consensus 60 ~qwLqVDLg~~~~Vt~V~tQG~~~~~~~vt~Y~l~yS~D--g~~W~~y~~~~vF~GN~d~~t~v~~~l~~pi~ARyVRi~ 137 (257)
T 2vm9_A 60 NQFIVAGSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLD--NVNWVEYNNGEIINANKDRNSIVTINFNPPIKARSIAIH 137 (257)
T ss_dssp TCCEEEEEEEEEEEEEEEEECCSSSSCEEEEEEEEEESS--SSCEEEGGGGCCEECCSSSSCCEEEEEEEEEEEEEEEEE
T ss_pred CcEEeecCCCcEEEEEEEEeCCccCCceEEEEEEEEEcC--CCcEEEEcCCceecccCCCCceEEEeCCCCceEEEEEee
Confidence 469999999999999999865433456688999999874 46888763 466543333 344456678899999999
Q ss_pred EeeccCCcceeeeeEEEEeccc
Q 006838 338 LLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 338 ~LSHyGsE~YC~LS~vrVyG~t 359 (629)
.++.|| +-| -+++|||-+
T Consensus 138 p~~w~~--~i~--lR~El~Gc~ 155 (257)
T 2vm9_A 138 PQTYNN--HIS--LRWELYALP 155 (257)
T ss_dssp EEEEES--SCE--EEEEEEECC
T ss_pred eeeecC--ceE--EEEEeccCC
Confidence 999997 356 589999986
No 37
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A
Probab=93.84 E-value=0.16 Score=51.21 Aligned_cols=92 Identities=17% Similarity=0.298 Sum_probs=66.0
Q ss_pred CcEEEEEecceeeecEEEEeecc----cccCCCCeEEEEeeccCCCCCceeeEE------EEeecc-ccceeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIANFE----HYSSNFKEFELSGSLSYPTEVWSPLGK------FVATNV-KQLQSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE----~fSS~pKdF~VsgS~~YPt~~W~~LG~------F~a~N~-R~~Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|.+.-.- ....-++.|+|..|. +...|..+-. |..... .....-.+..|.-
T Consensus 55 ~qwlqVDLg~~~~v~~v~tqg~~~~~~~~~~~v~~y~i~~S~--Dg~~W~~~~~~~~~~~f~GN~d~~~~v~~~l~~pi~ 132 (318)
T 2qqi_A 55 REWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSS--NGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLI 132 (318)
T ss_dssp TCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEES--SSSSCEECEETTEECCEECCSSSSSCEEEEEEEEEE
T ss_pred CceEEEccCCcEEEEeeeeeccccCCCCccEeEEEEEEEEec--CCCeEEEEeCCCeeEEEECCcCCCceeEeccCCCee
Confidence 46999999999999999985321 123568899999988 4578987643 443211 1223334445778
Q ss_pred EEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 331 VRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 331 ~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+|||||..++.++ +.| + +|+|||-.
T Consensus 133 aRyVRi~p~~~~~--~~~-l-r~ElyGc~ 157 (318)
T 2qqi_A 133 TRFVRIKPATWET--GIS-M-RFEVYGCK 157 (318)
T ss_dssp EEEEEEEEEEEES--SCC-B-EEEEEEEC
T ss_pred EEEEEEEEeeccc--eeE-E-EEEecccc
Confidence 9999999999886 567 4 99999975
No 38
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A
Probab=93.82 E-value=0.3 Score=45.96 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=67.2
Q ss_pred CcEEEEEecceeeecEEEEeecc---cccCCCCeEEEEeeccCCCCCceeeE------EEEeeccc-cceeeeCCCCceE
Q 006838 262 GKFVVIELGEETLVDTVKIANFE---HYSSNFKEFELSGSLSYPTEVWSPLG------KFVATNVK-QLQSFKLPEPKWV 331 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE---~fSS~pKdF~VsgS~~YPt~~W~~LG------~F~a~N~R-~~Q~F~L~~~~w~ 331 (629)
..|+-|.|-+...|..|.+.-.- ....-++.|+|.-|.. ...|...- .|.....+ ......+..|..+
T Consensus 72 ~qWLQVDLg~~~~VtgV~tQG~~~~~~~~~~vt~Y~l~yS~D--g~~W~~y~~~~~~kvF~GN~D~~t~v~~~l~~pi~A 149 (178)
T 2wuh_A 72 KEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRD--GTRWISWRNRHGKQVLDGNSNPYDIFLKDLEPPIVA 149 (178)
T ss_dssp CCCEEEEEEEEEEEEEEEEECCCGGGTCCCCCSEEEEEEESS--SSSCEECCCTTSCCCEECCSSSSSCEEEEEEEEEEE
T ss_pred CCEEEEecCCceEEeEEEEecccCCCCccceeEEEEEEEEcC--CCcEEEEecCCccccccccCCCCceEEEeCCCCeEE
Confidence 46999999999999999986421 2345689999999884 47887753 35542222 2334455567899
Q ss_pred EEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 332 RYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 332 RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
|||||..++.|+. .-| -+|+|||-.
T Consensus 150 RyVRi~p~~w~~~-~i~--lRvElyGC~ 174 (178)
T 2wuh_A 150 RFVRFIPVTDHSM-NVC--MRVELYGCV 174 (178)
T ss_dssp EEEEEEEECSSCB-CCC--BEEEEEEEE
T ss_pred EEEEEEEEeecCC-CeE--EEEEEeccc
Confidence 9999999998862 345 489999974
No 39
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Probab=92.98 E-value=0.82 Score=43.48 Aligned_cols=90 Identities=20% Similarity=0.417 Sum_probs=64.2
Q ss_pred CcEEEEEecceeeecEEEEeeccc---ccCCCCeEEEEeeccCCCCCceeeEEEEe-eccc--cceeeeCCCCceEEEEE
Q 006838 262 GKFVVIELGEETLVDTVKIANFEH---YSSNFKEFELSGSLSYPTEVWSPLGKFVA-TNVK--QLQSFKLPEPKWVRYLK 335 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE~---fSS~pKdF~VsgS~~YPt~~W~~LG~F~a-~N~R--~~Q~F~L~~~~w~RYLK 335 (629)
..|+.|.|-+...|..|.+..-.. ...-++.|+|..|. +...|..+..... .|.. ......+..|.-+||||
T Consensus 65 ~qwLQVDLg~~~~VtgV~~tQG~~~~~~~~~vt~Y~l~yS~--DG~~W~~~~~~~~~GN~d~~t~v~~~f~~pi~ARYVR 142 (192)
T 2w1s_A 65 GEFIGLDLGKEIKLDGIRFVIGKNGGGSSDKWNKFKLEYSL--DNESWTTIKEYDKTGAPAGKDVIEESFETPISAKYIR 142 (192)
T ss_dssp TCEEEEEEEEEEEEEEEEEEECCSSTTTTCCCSEEEEEEES--SSSSCEEEEEEECTTCCSSCEEEEEEEEEEEEEEEEE
T ss_pred CceEEEECCCeEEEEEEEEEcCCCCCCCCCeEEEEEEEEEc--CCCCeEEEecCCccCCcCCCcEEEEecCCCceEEEEE
Confidence 569999999999999994443221 14678999999998 4589999988764 3321 23455566678999999
Q ss_pred EEEeeccCCcceeeeeEEEE
Q 006838 336 LNLLSHYGSEFYCTLSVVEV 355 (629)
Q Consensus 336 le~LSHyGsE~YC~LS~vrV 355 (629)
|..++. +..++ .+.-|||
T Consensus 143 i~p~~~-~~~w~-~~~elRV 160 (192)
T 2w1s_A 143 LTNMEN-INKWL-TFSEFAI 160 (192)
T ss_dssp EEECSC-BSCCE-EEEEEEE
T ss_pred EEEeeC-CCccc-eEEEEEE
Confidence 999983 33333 2456777
No 40
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}
Probab=92.40 E-value=0.35 Score=48.82 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=66.7
Q ss_pred CcEEEEEecceeeecEEEEeec---c-cccCCCCeEEEEeeccCCCCCceeeEE------EEeeccc-cceeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIANF---E-HYSSNFKEFELSGSLSYPTEVWSPLGK------FVATNVK-QLQSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANf---E-~fSS~pKdF~VsgS~~YPt~~W~~LG~------F~a~N~R-~~Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|.+.-. + ....-++.|+|..|. +...|..+-. |.....+ ....-.|..|.-
T Consensus 56 ~qwlqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~--dg~~W~~~~~~~~~~~f~Gn~d~~~~v~~~l~~pi~ 133 (325)
T 2qqj_A 56 KEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVST--NGEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLL 133 (325)
T ss_dssp TCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEES--SSSSCEECEETTEECCEECCSSSSCCEEEEEEEEEE
T ss_pred CccEEEeccceEEEEEEEeeCCcCCCCCcceeEEEEEEEEEc--CCcEeEEeeCCCccEEEeccCCCCeeEEEecCCceE
Confidence 4699999999999999998642 1 134568899999988 4578987643 4432112 223334556788
Q ss_pred EEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 331 VRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 331 ~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+|||||..++.++ +.| -+|+|||-.
T Consensus 134 aRyvRi~p~~~~~--~~~--~R~ElyGc~ 158 (325)
T 2qqj_A 134 TRFVRIRPQTWHS--GIA--LRLELFGCR 158 (325)
T ss_dssp EEEEEEEEEEEES--SCC--BEEEEEEEC
T ss_pred EEEEeecCccccc--cce--eeeeeeeee
Confidence 9999999999887 556 589999985
No 41
>1o59_A Allantoicase; YIR029W, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics, hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: b.18.1.22 b.18.1.22 PDB: 1sg3_A
Probab=92.37 E-value=2.6 Score=44.59 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=88.7
Q ss_pred ccccccccCceEeecccccc-ccCcccccCcccccccc----------------cCCCCcEEEEEecc-eeeecEEEEee
Q 006838 221 YNYASAMKGAKLVAHNKEAK-GASNILGKDHNKYLRNP----------------CSVAGKFVVIELGE-ETLVDTVKIAN 282 (629)
Q Consensus 221 ~NYAS~d~GAkIl~sn~eak-gasnIL~~nkD~YMLnP----------------Csa~~kfVVIELcE-eI~V~~I~IAN 282 (629)
.|-||...||+|++++.+-- .++|+|.+.+..+...- =....-|+||.|-- .=.|..|+|--
T Consensus 35 ~dLas~~lGg~vl~~sDe~Fa~a~NLL~p~~p~~~~~~f~~~GkwmDGWETRR~R~~ghDW~IirLG~~pG~I~gveVDT 114 (355)
T 1o59_A 35 VDVIGSKLGGQVVSFSDEWFASAENLIQPTAPIRDPTRFVHSGAWYDGWETRRHNEMEYDWVIIKMGVAAAHIIGGEIDT 114 (355)
T ss_dssp EETTCGGGTCEEEEESCCSSBCGGGGGCSSCCCCC---------CCSSEECCSSCSSSCEEEEEECSSSCEEEEEEEEEC
T ss_pred hhhhhhhcCCEEEEEcccccccHHhcCCCCCccccCCccccCCCcccccccccCCCCCCCEEEEEcCCCCcEEEEEEEec
Confidence 69999999999999996543 56788887765555221 01123599999998 77888887743
Q ss_pred cccccCC-CCeEEEEeec--cCCC------CCceeeEEEEeeccccceeeeCCC---CceEEEEEEEEeeccCCcceeee
Q 006838 283 FEHYSSN-FKEFELSGSL--SYPT------EVWSPLGKFVATNVKQLQSFKLPE---PKWVRYLKLNLLSHYGSEFYCTL 350 (629)
Q Consensus 283 fE~fSS~-pKdF~VsgS~--~YPt------~~W~~LG~F~a~N~R~~Q~F~L~~---~~w~RYLKle~LSHyGsE~YC~L 350 (629)
-||.-+ |-.++|-+.. .+|. ..|..|=.=+.-.....+.|.+.. +.-+-.|||.+.=-=| +
T Consensus 115 -a~F~GN~pp~vsvea~~~~~~~~~~~~~~~~W~~ilp~~~l~p~~~h~f~v~~~~~~~~~THvRLniyPDGG------i 187 (355)
T 1o59_A 115 -AFFNGNHAPFVSIEALYDEGEEGNIVEDDSRWVEIVEKFECGPSQRHLFVRGNGLTKERFTHIKLKMYPDGG------I 187 (355)
T ss_dssp -TTCSSSBCSEEEEEEECCCSCCSCCCTTCTTCEEEEEEEECCTTCEEEEECTTCSCSSCBSEEEEEEESCCE------E
T ss_pred -CcccCCCCCeEEEEEEecCCCcccccccCCCceEeecccccCCCcEeeEECcccCCCcceeEEEEEEecCCC------e
Confidence 344444 7777887742 2343 469866554443333456799976 4445678888863333 8
Q ss_pred eEEEEeccc
Q 006838 351 SVVEVYGVD 359 (629)
Q Consensus 351 S~vrVyG~t 359 (629)
.++||||.-
T Consensus 188 aRlRvyG~~ 196 (355)
T 1o59_A 188 ARFRLYGRV 196 (355)
T ss_dssp SEEEEEEEE
T ss_pred eEEEEeccc
Confidence 999999964
No 42
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A
Probab=91.62 E-value=0.49 Score=47.67 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=62.4
Q ss_pred CcEEEEEecceeeecEEEEeecc--cccCCCCeEEEEeeccCCCCCceeeE--------EEEeecccc-ceeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIANFE--HYSSNFKEFELSGSLSYPTEVWSPLG--------KFVATNVKQ-LQSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE--~fSS~pKdF~VsgS~~YPt~~W~~LG--------~F~a~N~R~-~Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|.+.-.- ....-++.|+|..|. +...|..+- .|.....+. ...-.+ .|.-
T Consensus 214 ~qwLqVDLg~~~~Vt~V~tqg~~~~~~~~~v~~Y~l~~S~--dg~~W~~~~~~~~~~~~~F~GN~d~~t~~~~~~-~pi~ 290 (318)
T 2qqi_A 214 NEWLQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSN--NGSDWKMIMDDSKRKAKSFEGNNNYDTPELRTF-PALS 290 (318)
T ss_dssp CCCEEEEEEEEEEEEEEEEEECCCTTCCCCCCCEEEEEES--SSSSCEECBCTTSSSBCCBCCCSSSSCCEEEEE-EEEE
T ss_pred CcEEEEeCCCceEEEEEEEcCccCCCCCeEEEEEEEEEEC--CCCCEEEEEcCCCccccccccccCCCceEEeeC-CCEE
Confidence 56999999999999999986421 123468999999997 457888753 233211111 122223 3688
Q ss_pred EEEEEEEEee-ccCCcceeeeeEEEEeccc
Q 006838 331 VRYLKLNLLS-HYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 331 ~RYLKle~LS-HyGsE~YC~LS~vrVyG~t 359 (629)
+|||||..++ +|| +-| -+|+|||-.
T Consensus 291 ARyVRi~p~~~~~~--~i~--lR~ElyGc~ 316 (318)
T 2qqi_A 291 TRFIRIYPERATHG--GLG--LRMELLGCE 316 (318)
T ss_dssp EEEEEEEECCCSSS--CBC--EEEEEEEEE
T ss_pred EEEEEEEEEeecCC--CeE--EEEEEEeec
Confidence 9999999997 454 345 699999963
No 43
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=89.87 E-value=7.7 Score=35.38 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=9.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKEL 484 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEel 484 (629)
|-+||..|+....-+..-++++
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l 25 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEA 25 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444444444444444443
No 44
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}
Probab=89.64 E-value=1.5 Score=44.15 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=63.9
Q ss_pred CCcEEEEEecceeeecEEEEeecc--------cccCCCCeEEEEeeccCCCCCceeeE--------EEEeecccc---ce
Q 006838 261 AGKFVVIELGEETLVDTVKIANFE--------HYSSNFKEFELSGSLSYPTEVWSPLG--------KFVATNVKQ---LQ 321 (629)
Q Consensus 261 ~~kfVVIELcEeI~V~~I~IANfE--------~fSS~pKdF~VsgS~~YPt~~W~~LG--------~F~a~N~R~---~Q 321 (629)
...|+-|.|-+...|..|.+.-.- ....-++.|+|..|.. ...|..+- .|.....+. .+
T Consensus 214 ~~qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~vt~Y~l~yS~d--g~~W~~~~~~~~~~~~vF~GN~d~~t~v~~ 291 (325)
T 2qqj_A 214 GEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLN--GKDWEYIQDPRTQQPKLFEGNMHYDTPDIR 291 (325)
T ss_dssp TTCCEEEEEEEEEEEEEEEEECBCCC----CCCCCBCEEEEEEEEESS--SSSCEECEETTTTEECCEECCSSSSSCEEE
T ss_pred ccceeEeccCCceeEEEEEecCCCCCCCccccCcceeEEEEEEEEEeC--CCCeEEEecCCCCccceeecccCCCCeEEe
Confidence 356999999999999999886422 2345678899999874 57898763 244321111 23
Q ss_pred eeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 322 SFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 322 ~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
.| + |..+|||||..++.++. +-| -+|+|||-.
T Consensus 292 ~l--~-pi~ARyVRi~p~~w~~~-~i~--mR~El~Gc~ 323 (325)
T 2qqj_A 292 RF--D-PIPAQYVRVYPERWSPA-GIG--MRLEVLGCD 323 (325)
T ss_dssp EE--E-EEEEEEEEEEEEEECTT-CCC--BEEEEEEEE
T ss_pred ec--C-CEEEEEEEEEeeeeecC-CeE--EEEEEeeec
Confidence 44 2 68999999999998752 355 599999953
No 45
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=89.38 E-value=1.4 Score=46.18 Aligned_cols=91 Identities=19% Similarity=0.273 Sum_probs=63.0
Q ss_pred CcEEEEEecceeeecEEEEeeccc--ccCCCCeEEEEeeccCCCCCceeeE--------EEEeeccccc-eeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIANFEH--YSSNFKEFELSGSLSYPTEVWSPLG--------KFVATNVKQL-QSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE~--fSS~pKdF~VsgS~~YPt~~W~~LG--------~F~a~N~R~~-Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|.+.---. ...-++.|+|..|. +...|..+- .|.....+.. ..-.+ .|.-
T Consensus 346 ~qwLqVDLg~~~~vt~v~tqg~~~~~~~~~v~~Y~i~~S~--dg~~W~~~~~~~~~~~~~F~GN~d~~~~~~~~~-~pi~ 422 (450)
T 2qqm_A 346 NEWLQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSN--NGSDWKMIMDDSKRKAKSFEGNNNYDTPELRTF-PALS 422 (450)
T ss_dssp SCCEEEEEEEEEEEEEEEEECCSCTTTCCCEEEEEEEEES--SSSSCEECBCTTSSSBCCEECCSSSSSCEEEEE-EEEE
T ss_pred CceEEEeCCCcEEEEEEEecCccCCCCcEEEEEEEEEEEC--CCCcEEEEEcCCCCcccEecCcCCCCceEEccC-CCeE
Confidence 569999999999999999864211 23468999999998 457887653 3553222121 11123 3688
Q ss_pred EEEEEEEEee-ccCCcceeeeeEEEEeccc
Q 006838 331 VRYLKLNLLS-HYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 331 ~RYLKle~LS-HyGsE~YC~LS~vrVyG~t 359 (629)
+|||||.-++ +|| +-| -+|+|||-+
T Consensus 423 aRyVRi~p~~~~~~--~i~--lR~ElyGc~ 448 (450)
T 2qqm_A 423 TRFIRIYPERATHG--GLG--LRMELLGCE 448 (450)
T ss_dssp EEEEEEEEEEEBTT--BEE--EEEEEEEEC
T ss_pred EEEEEEEEeeccCC--CeE--EEEEEEccc
Confidence 9999999997 555 445 699999963
No 46
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.14 E-value=1.7 Score=46.37 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRV 541 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqL 541 (629)
-|.++|..+..+.+..-.|+..+.......++...+.=..+..+.+.++..|..| |..|..|+
T Consensus 71 ~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~l-----------------k~~V~~q~ 133 (390)
T 1deq_A 71 KLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEIL-----------------RRKVIEQV 133 (390)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-----------------HHHHHHHh
Confidence 4566666666777777777777776666666555444444444444444444433 23333333
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 542 NELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 542 d~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
. ....||..|+.++.+++-||.+.
T Consensus 134 ~----~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 134 Q----RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44556666666666666666544
No 47
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=89.05 E-value=8.7 Score=37.44 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhh
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDV-------FPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLES 532 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~-------f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~s 532 (629)
+..+-+|.+.|..-..-|..=++++..+|... ...|+++++.+....+.++..|++|....|.+++...-..+
T Consensus 51 L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~ 130 (189)
T 2v71_A 51 LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIM 130 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 44455566666665555555555555555444 67788899988888899999999998888888887777776
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Q 006838 533 WKTVVSFRVNELIKENSMLRIDVEK 557 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR~~Ve~ 557 (629)
=-..+.++|+++.-.|+.|=++++.
T Consensus 131 SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 131 SLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788999999999998888864
No 48
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=88.84 E-value=0.25 Score=56.17 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=46.1
Q ss_pred eccccccccCcccccCcccccccccC---CCCcEEEEEecceeeecEEEEeecccccCCCCeEEEEeeccCCCCCceeeE
Q 006838 234 AHNKEAKGASNILGKDHNKYLRNPCS---VAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLG 310 (629)
Q Consensus 234 ~sn~eakgasnIL~~nkD~YMLnPCs---a~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS~~YPt~~W~~LG 310 (629)
....+.+++.+++.+|...|...+=. ....||.|+|.+.+.|..|.|.---.=... .++|.+|. +.++|+.|+
T Consensus 597 t~~~~~g~~~~a~Dgd~~T~w~s~~~~~~~~g~wi~VdL~~~~~V~~I~i~~~~~~~~~--~~~ve~S~--DGk~W~~v~ 672 (716)
T 2cho_A 597 SNVEQIKNLPLQVKANRVLISPANEVVKWAAGNSVEIELDAIYPGENIQINFGKDAPCT--WGRLEIST--DAKEWKTVD 672 (716)
T ss_dssp -------CCCEEEETTEEEECC------------CEEEEEEEEEEEEEEECC----------------------------
T ss_pred cccccccCchheeCCCcceEEECCCCccCCCCCEEEEEcCCcEEEEEEEEecCCCCCCc--eEEEEEEC--CCCCccCCC
Confidence 33344567888999998889887743 346799999999999999998532110111 26777777 568999995
Q ss_pred EEEeeccccceeeeCC-CCceEEEEEEEEeeccCCcceeeeeEEEEecc
Q 006838 311 KFVATNVKQLQSFKLP-EPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGV 358 (629)
Q Consensus 311 ~F~a~N~R~~Q~F~L~-~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~ 358 (629)
+... .+.+.+. .|.=+|||||.-++.-+..-| +.-|+||..
T Consensus 673 -~~~~----~~~~~~~~~pv~ARyVRl~~~~~~~~~~w--i~Ef~V~~~ 714 (716)
T 2cho_A 673 -LKQK----ESRLSAGLQKAPVKFVRFTNVSDEEQQVY--LRQFVLTIE 714 (716)
T ss_dssp -----------CCEEECTTCEEEEEEC---------------CEEEEES
T ss_pred -cCCc----ceEEEeccCCceeEEEEEEecccCCCCee--EEEEEEecc
Confidence 5432 2345554 366699999999987444445 789999864
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.76 E-value=2.8 Score=43.99 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHH--------HHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDR--------EITRISLLLEKSKLELEELVKWRETMERGLSDLESW 533 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~--------el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~sw 533 (629)
.+.++-+.||.-++...++..++-+++......++. .+..+.....+.....++++.-|+.+.++.
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 437 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDW------ 437 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhh------
Confidence 678888888888888888888888888777776662 222223333333233333333343444222
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 534 KTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 534 ks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
...+.+.+++.+++..++-+++++....+.+..+
T Consensus 438 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 438 -DMYQHKETQLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 4457788899999999999988888777655544
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.46 E-value=2.7 Score=44.14 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
...+...+.+.++...++.++++++++.+.+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARL 454 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhh
Confidence 3344555666666666777776666654433
No 51
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=88.09 E-value=1 Score=47.31 Aligned_cols=92 Identities=17% Similarity=0.288 Sum_probs=65.1
Q ss_pred CcEEEEEecceeeecEEEEeec----ccccCCCCeEEEEeeccCCCCCceeeE------EEEeec-cccceeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIANF----EHYSSNFKEFELSGSLSYPTEVWSPLG------KFVATN-VKQLQSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANf----E~fSS~pKdF~VsgS~~YPt~~W~~LG------~F~a~N-~R~~Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|.+.-. +....-++.|.|..|.. ...|..+- .|.... ......-.+..|..
T Consensus 187 ~qwlqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~d--g~~W~~~~~~~~~~~F~GN~d~~~~v~~~l~~pi~ 264 (450)
T 2qqm_A 187 REWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSN--GEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLI 264 (450)
T ss_dssp TCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS--SSSEEECBSSSSBCCEECCSSSSCCEEEEEEEEEE
T ss_pred CceEEEcccceEEEEEEeccCCCCCCCCcceeEEEEEEEEeCC--CCceeEEeCCCeeeEeecccCCCcEEEEecCCceE
Confidence 4699999999999999988542 12234689999999874 57888762 243321 12222334456789
Q ss_pred EEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 331 VRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 331 ~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+|||||..++.++ +.| -+++|||-.
T Consensus 265 aRyvRi~p~~w~~--~~~--lr~E~~Gc~ 289 (450)
T 2qqm_A 265 TRFVRIKPATWET--GIS--MRFEVYGCK 289 (450)
T ss_dssp EEEEEEEEEEEES--SCC--BEEEEEEEC
T ss_pred EEEEEEEEeeccC--cee--EEEEEeccc
Confidence 9999999999775 456 589999975
No 52
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.96 E-value=3.4 Score=40.77 Aligned_cols=27 Identities=11% Similarity=0.200 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006838 493 PELDREITRISLLLEKSKLELEELVKW 519 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~ 519 (629)
.++++++.+...-++..++.|....++
T Consensus 56 ~d~~~~~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 56 LALKLQVSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 53
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.27 E-value=5.5 Score=47.24 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
..++.++.+|..+|..||..++.+...+...
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888999999998888887554443
No 54
>2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A*
Probab=86.91 E-value=1.7 Score=43.22 Aligned_cols=90 Identities=12% Similarity=0.171 Sum_probs=65.1
Q ss_pred CcEEEEEecc--eeeecEEEEeecccccCCCCeEEEEeeccCCCCCceeeE---EEEeeccc-cceeeeCCCCceEEEEE
Q 006838 262 GKFVVIELGE--ETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLG---KFVATNVK-QLQSFKLPEPKWVRYLK 335 (629)
Q Consensus 262 ~kfVVIELcE--eI~V~~I~IANfE~fSS~pKdF~VsgS~~YPt~~W~~LG---~F~a~N~R-~~Q~F~L~~~~w~RYLK 335 (629)
..|+ .|-+ ...|..|.+.=.-....-++.|+|.-|.. ...|...- .|.....+ ....-.|+.|..+||||
T Consensus 59 ~qwL--DLg~~~~~~VtgV~tQG~~~~~~~VtsY~l~yS~d--g~~W~~y~~~~vF~GN~d~~t~v~~~l~~pi~ARyvR 134 (254)
T 2wn3_A 59 NQYI--VAGCEVPRTFMCVALQGRGDADQWVTSYKIRYSLD--NVSWFEYRNGAAVTGVTDRNTVVNHFFDTPIRARSIA 134 (254)
T ss_dssp TCCE--EEEEEEEEEEEEEEEECCSSSSCEEEEEEEEEESS--SSSCEEGGGGCCEECCSSSSCCEEEEEEEEEEEEEEE
T ss_pred hheE--EcCCCeEEEEEEEEEeCCCCCCCceEEEEEEEECC--CCcEEEecCCcEEeccCCCCeeEEEecCCCcEEEEEE
Confidence 3476 8888 88899888864323456678899988873 57888763 46653322 23445566788999999
Q ss_pred EEEeeccCCcceeeeeEEEEeccc
Q 006838 336 LNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 336 le~LSHyGsE~YC~LS~vrVyG~t 359 (629)
|.-++.|| +-| =+++|||-.
T Consensus 135 i~P~~w~~--~i~--lR~El~Gc~ 154 (254)
T 2wn3_A 135 IHPLTWNG--HIS--LRCEFYTQP 154 (254)
T ss_dssp EEEEEEES--SCE--EEEEEEECC
T ss_pred EEEEEecC--ccE--EEEEeccCC
Confidence 99999997 356 699999985
No 55
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.64 E-value=18 Score=32.65 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHH
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFR 540 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsq 540 (629)
+-|..|+..|+...--+..=++...+-.......|+++++.+...-+.++..|++|...-|..++...-..+=-..++++
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 34555555555544333322233333333456789999999999999999999999887777777665555555667899
Q ss_pred HHHHHHHhhHHHHHHH
Q 006838 541 VNELIKENSMLRIDVE 556 (629)
Q Consensus 541 Ld~l~reN~~LR~~Ve 556 (629)
++.+.-.|+.|=.++.
T Consensus 86 ~n~aiErnalLE~El~ 101 (111)
T 2v66_B 86 LNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999886
No 56
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=85.52 E-value=1.7 Score=45.70 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=64.9
Q ss_pred CcEEEEEecceeeecEEEEeec---c-cccCCCCeEEEEeeccCCCCCceeeE------EEEeecc-ccceeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIANF---E-HYSSNFKEFELSGSLSYPTEVWSPLG------KFVATNV-KQLQSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANf---E-~fSS~pKdF~VsgS~~YPt~~W~~LG------~F~a~N~-R~~Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|.+.-. + ....-++.|+|..|.. ...|..+- .|..... .....-.+..|..
T Consensus 185 ~~wlqVDLg~~~~vt~v~tqG~~~~~~~~~~~v~~y~l~~S~d--g~~W~~~~~~~~~~~F~Gn~d~~~~v~~~l~~pi~ 262 (460)
T 2qqo_A 185 KEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTN--GEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLL 262 (460)
T ss_dssp TCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS--SSSCEECEETTEECCEECCSSSSSCEEEEEEEEEE
T ss_pred ceeEeccCCceEEEEEEEeecCCCCCCCccceEEEEEEEEEcC--CCCeeEecCCCccEEEecccCCCceEEEeCCCCee
Confidence 4589999999999999988642 1 1234578999999874 57888652 3443221 1222334556778
Q ss_pred EEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 331 VRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 331 ~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+|||||..++.++ ..| -+++|||-.
T Consensus 263 aRyvRi~p~~~~~--~~~--lr~E~~Gc~ 287 (460)
T 2qqo_A 263 TRFVRIRPQTWHS--GIA--LRLELFGCR 287 (460)
T ss_dssp EEEEEEEEEEEES--SCC--BEEEEEEEC
T ss_pred eeEEEEEeeeccC--cce--EEEeeeecc
Confidence 9999999999876 566 399999975
No 57
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=84.94 E-value=10 Score=41.44 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry 488 (629)
+.-|.++|.+|+...+--.+|++.+...|
T Consensus 102 LqeLe~~l~~lsn~Ts~~~~~i~~Iq~sl 130 (464)
T 1m1j_B 102 LRDLKDRVAKFSDTSTTMYQYVNMIDNKL 130 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 55677777777776666677887777766
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.91 E-value=12 Score=39.81 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELD 496 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~ 496 (629)
..-+.+.++.|+-.+...++.+..+.+...+...+++
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 4456677777777777777777766666555554444
No 59
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=84.56 E-value=16 Score=37.50 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-cccccCccchhhhhhhhHHHHhhh
Q 006838 578 FFACFAIFKLVSARLSTLLRASQCS-KVRRTNRGWVLILLSSSMTIFVTL 626 (629)
Q Consensus 578 ~f~~la~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~ll~ss~~~~fi~~ 626 (629)
+|..+|++-+...++..+|++-... -+-...-||.++++.+.++..++.
T Consensus 305 ~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~ 354 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMV 354 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777777764321 111123465555554444444443
No 60
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=84.16 E-value=23 Score=35.84 Aligned_cols=47 Identities=9% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-cccccCccchhhhhhhhHHHHh
Q 006838 578 FFACFAIFKLVSARLSTLLRASQCS-KVRRTNRGWVLILLSSSMTIFV 624 (629)
Q Consensus 578 ~f~~la~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~ll~ss~~~~fi 624 (629)
+|..+|++-+...++..+|++-... -+-...-||.++++.+.+++.+
T Consensus 281 ~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~ 328 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMI 328 (339)
T ss_dssp HHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHH
Confidence 3455666666778888899864321 1222334555554444444333
No 61
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=83.64 E-value=2.3 Score=46.78 Aligned_cols=92 Identities=16% Similarity=0.336 Sum_probs=65.6
Q ss_pred CcEEEEEecceeeecEEEEeeccc--ccCCCCeEEEEeeccCCCCCceeeE--------EEEeec-cccceeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIANFEH--YSSNFKEFELSGSLSYPTEVWSPLG--------KFVATN-VKQLQSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE~--fSS~pKdF~VsgS~~YPt~~W~~LG--------~F~a~N-~R~~Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|.+.=.-. ...-++.|+|..|. +...|..+- .|.... ......-.+..|.-
T Consensus 383 ~qwlqVDLg~~~~vt~v~tqg~~~~~~~~~v~~y~i~yS~--Dg~~W~~~~~~~~~~~~~f~gn~d~~~~v~~~l~~pi~ 460 (647)
T 1sdd_B 383 EPWIQVDMQKEVLLTGIQTQGAKHYLKPYYTTEFCVAYSL--DRKNWRIFKGNSTRNVMYFGGNSDASTIKENQIDPPVV 460 (647)
T ss_dssp CSCEEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEES--SSSSCEECCSSCSSSSCCEECCSSSSSCEEEEEEEEEE
T ss_pred cceEEeccCCeEEEEEEEEcCCCCCCCccEEEEEEEEEEc--CCCceEEecccCCCcceEecCCCCCCceeEEcCCCCEE
Confidence 369999999999999998853211 35678899999988 457798763 343321 11223344556778
Q ss_pred EEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 331 VRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 331 ~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+|||||..++.||. -| -+|+|||..
T Consensus 461 aRyVRi~p~~~~~~--~~--lr~ElyGc~ 485 (647)
T 1sdd_B 461 ARYIRISPTGSYNK--PA--LRLELQGCE 485 (647)
T ss_dssp EEEEEEEEEEEESS--CE--EEEEEEEEC
T ss_pred EEEEEEEEEeecCc--ce--eeecccccc
Confidence 99999999998873 34 679999985
No 62
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=83.33 E-value=13 Score=36.31 Aligned_cols=38 Identities=24% Similarity=0.207 Sum_probs=23.3
Q ss_pred hhhHHHHHHH-------HHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 530 LESWKTVVSF-------RVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 530 l~swks~VSs-------qLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
+.+||..+.. +...|+++...||...+.++..+-.+|.
T Consensus 72 ~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 72 VEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666665533 3666777777777776666666555543
No 63
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.56 E-value=18 Score=34.82 Aligned_cols=54 Identities=13% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHHHHHHHH----------hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh
Q 006838 478 EDYIKELNQRQ----------QDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLE 531 (629)
Q Consensus 478 e~YiEeln~ry----------~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~ 531 (629)
++-++|+|..| .+...++.+.++.....+..++..+..|...|+..++++..++
T Consensus 12 ekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ 75 (168)
T 3o0z_A 12 QKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQ 75 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566555544 4455566666666677777777778888889999999886654
No 64
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=80.64 E-value=2.1 Score=47.15 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=65.1
Q ss_pred CcEEEEEecceeeecEEEEeeccc--ccCCCCeEEEEeeccCCCCCceeeE--------EEEee-ccccceeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIANFEH--YSSNFKEFELSGSLSYPTEVWSPLG--------KFVAT-NVKQLQSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE~--fSS~pKdF~VsgS~~YPt~~W~~LG--------~F~a~-N~R~~Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|.+.---. ...-++.|+|..|.. ...|..+- .|... |......-.+..|..
T Consensus 543 ~qwLqVDLg~~~~vt~v~tqg~~~~~~~~~v~~y~l~~S~d--g~~W~~~~~~~~~~~~~F~GN~d~~~~~~~~l~~pi~ 620 (647)
T 1sdd_B 543 NQWLQIDLLKIKKITAIVTQGCKSLSSEMYVKSYTIHYSDQ--GTDWKPYREKSSMVDKIFEGNNNVRGHVKNFFNPPII 620 (647)
T ss_dssp CCCEEEEEEEEEEEEEEEEECEEETTEEEEEEEECEEEESS--SSCCEECCCSSCSSCCCEECCSSSSCCEEEEEEEEEE
T ss_pred CcEEEEeCCCceEEEEEEeecCCCCCCCcceEEEEEEEECC--CCcEEEEEcCCCcceeeeeccCCCCceEEEeCCCcEE
Confidence 569999999999999998753211 234568888888873 57888763 35432 122334445556789
Q ss_pred EEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 331 VRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 331 ~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+|||||.-++.+| +-| -+++|||-+
T Consensus 621 ARyvRi~p~~w~~--~i~--~R~El~Gc~ 645 (647)
T 1sdd_B 621 SRFIRIIPKTWNQ--SIA--LRLELFGCD 645 (647)
T ss_dssp EEEEEECCCEEES--SCE--EEEEEEEEC
T ss_pred EEEEEEEEEEcCC--CcE--EEEEEEeEe
Confidence 9999999999886 445 699999964
No 65
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=80.37 E-value=7.2 Score=41.04 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=64.1
Q ss_pred CCcEEEEEecceeeecEEEEeecc--------cccCCCCeEEEEeeccCCCCCceeeEE--------EEeeccc-cceee
Q 006838 261 AGKFVVIELGEETLVDTVKIANFE--------HYSSNFKEFELSGSLSYPTEVWSPLGK--------FVATNVK-QLQSF 323 (629)
Q Consensus 261 ~~kfVVIELcEeI~V~~I~IANfE--------~fSS~pKdF~VsgS~~YPt~~W~~LG~--------F~a~N~R-~~Q~F 323 (629)
...|+-|.|-+...|..|.+.-.- ....-++.|+|..|.+ ...|..+-+ |.....+ ....-
T Consensus 343 ~~qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~yS~d--g~~W~~~~~~~~~~~~vF~GN~d~~~~v~~ 420 (460)
T 2qqo_A 343 GEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLN--GKDWEYIQDPRTQQPKLFEGNMHYDTPDIR 420 (460)
T ss_dssp TTCCEEEEEEEEEEEEEEEEECCCCC--CCCGGGCCCEEEEEEEEESS--SSSCEECEETTTTEECCEECCSSSSSCEEE
T ss_pred ccceEEEcCCCceEEEEEEecCCCCCCCccccccceeEEEEEEEEEeC--CCceEEEECCCCCccceeccccCCCceeee
Confidence 356999999999999999886321 3456788999999874 578987632 4332111 11222
Q ss_pred eCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 324 KLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 324 ~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
.++ |.-+|||||.-++.++. +-| =||+|||-.
T Consensus 421 ~l~-pi~aRyvRi~p~~w~~~-~i~--mR~El~gc~ 452 (460)
T 2qqo_A 421 RFD-PIPAQYVRVYPERWSPA-GIG--MRLEVLGCD 452 (460)
T ss_dssp EEE-EEEEEEEEEEEEEECTT-CCC--BEEEEEEEE
T ss_pred eeC-ceEEEEEEEEeCeeecC-Cee--EEEEEeecC
Confidence 232 68899999999997643 256 589999964
No 66
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=80.20 E-value=18 Score=39.66 Aligned_cols=54 Identities=7% Similarity=-0.000 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
|-++|..+..+.+..-.|+..+.......++...+.=+....+.+.++..|..|
T Consensus 70 Lkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yI 123 (491)
T 1m1j_A 70 IRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTL 123 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 456666777777778888888887777777666555555555555555445444
No 67
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=80.01 E-value=6.6 Score=46.57 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=6.2
Q ss_pred CCceEEEEEE
Q 006838 327 EPKWVRYLKL 336 (629)
Q Consensus 327 ~~~w~RYLKl 336 (629)
+|+|+|.||=
T Consensus 677 ~phfvRCIkP 686 (1184)
T 1i84_S 677 NPNFVRCIIP 686 (1184)
T ss_dssp EEEECCEECC
T ss_pred CCCceeeeCC
Confidence 4567777664
No 68
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=79.83 E-value=13 Score=31.20 Aligned_cols=63 Identities=24% Similarity=0.264 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMER 525 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek 525 (629)
+-+|++.+|..-+.|++-|..+.++..+.-.+=+..-..+..+++-+--.|-+|.|.|+.++|
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 568999999999999998888888776665444444455555555555557777777777775
No 69
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=79.38 E-value=3.8 Score=44.36 Aligned_cols=92 Identities=18% Similarity=0.271 Sum_probs=65.0
Q ss_pred CcEEEEEecceeeecEEEEeec---c-cccCCCCeEEEEeeccCCCCCceeeE------EEEeeccc-cceeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIANF---E-HYSSNFKEFELSGSLSYPTEVWSPLG------KFVATNVK-QLQSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANf---E-~fSS~pKdF~VsgS~~YPt~~W~~LG------~F~a~N~R-~~Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|.+.-. + ....-++.|+|..|.. ...|..+- .|.....+ ....-.+..|..
T Consensus 304 ~qwlqVDLg~~~~vt~v~tqG~~~~~~~~~~~v~~y~l~~S~d--g~~W~~~~~~~~~~~f~GN~d~~~~v~~~l~~pi~ 381 (579)
T 2qqk_A 304 KEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTN--GEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLL 381 (579)
T ss_dssp TCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS--SSSCEECEETTEECCEECCSSSSCCEEEEEEEEEE
T ss_pred CceEEeecceeEEEEEEEccCCccCCCCcccceEEEEEEEECC--CCceeeeecCCcceEEcCCCCCCcEEEEeCCCCee
Confidence 5699999999999999988642 1 1344678999999874 67888653 23332111 222333556778
Q ss_pred EEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 331 VRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 331 ~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+|||||.-++.++ +.| -+++|||-.
T Consensus 382 aRyvRi~p~~~~~--~~~--lr~E~~Gc~ 406 (579)
T 2qqk_A 382 TRFVRIRPQTWHS--GIA--LRLELFGCR 406 (579)
T ss_dssp EEEEEEEEEEEES--SCC--BEEEEEEEC
T ss_pred eEEEEEEEEEcCC--ccE--Eeeeeeccc
Confidence 9999999999886 556 399999985
No 70
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=79.36 E-value=4.3 Score=48.11 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry 488 (629)
+-+-++++.|+.++..++.-++++..++
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l 887 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKH 887 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444444433
No 71
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=78.92 E-value=8.6 Score=41.99 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTV 536 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~ 536 (629)
+.-+..|-+.|.+|+-..+...+||..+...| +.-|+.....+.++.+.+.+|++.+. ++||.- ...
T Consensus 94 ~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~----~~~q~~~~~n~~~~~~s~~mle~~~~----~~~~~~-----~~~ 160 (461)
T 3ghg_B 94 RNSVDELNNNVEAVSQTSSSSFQYMYLLKDLW----QKRQKQVKDNENVVNEYSSELEKHQL----YIDETV-----NSN 160 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH----HHHHHHHHHHHHTTSCHHHHHHHHHT----HHHHHH-----HTH
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----ccccCCCCcchhHHHHHHHHHHHHHH----HHHhhh-----hcc
Confidence 55677788888888888888888888888777 44455444446666667666666543 333331 145
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 537 VSFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
..+.+..|+.-...+|..|+++...+..++.++
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c 193 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLESDVSAQMEYC 193 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 567777788888888888888887777777665
No 72
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.66 E-value=17 Score=31.24 Aligned_cols=66 Identities=18% Similarity=0.285 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 006838 491 VFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQA 563 (629)
Q Consensus 491 ~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~ 563 (629)
+|..|+..+...-.-+.-++-+|.+|.+.......+..+ +.+..+.+.++|..|+.+-...+++..
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e-------~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN-------AQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455443333333333455788887776666655533 334445566666666666555554443
No 73
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=78.09 E-value=9.1 Score=40.17 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=64.2
Q ss_pred CcEEEEEecceeeecEEEEeeccc---ccCCCCeEEEEeeccCCCCCceeeE------EEEeeccc-cceeeeCCCCceE
Q 006838 262 GKFVVIELGEETLVDTVKIANFEH---YSSNFKEFELSGSLSYPTEVWSPLG------KFVATNVK-QLQSFKLPEPKWV 331 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE~---fSS~pKdF~VsgS~~YPt~~W~~LG------~F~a~N~R-~~Q~F~L~~~~w~ 331 (629)
..|+-|.|-+...|..|.+.=..- ...-++.|+|.-|.. ...|...- .|.....+ ....-.++.|..+
T Consensus 59 ~qWLQVDLg~~~~VtgV~TQGr~~~g~~~~wVtsY~l~yS~D--G~~W~~y~d~~~~kvF~GN~D~~t~v~n~l~~PI~A 136 (351)
T 4ag4_A 59 EEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRD--GRRWMGWKDRWGQEVISGNEDPEGVVLKDLGPPMVA 136 (351)
T ss_dssp CCCEEEEEEEEEEEEEEEEECBCGGGTCCBCCSEEEEEEESS--SSCEEECCCTTSCCCEECCSSSSCCEEEEEEEEEEE
T ss_pred CCEEEecCCCeEEEEEEEEecccCCCCccceEEEEEEEEEeC--CCcEEEEECCCccccccccCCCCceEEEeCCCCcEE
Confidence 469999999999999999865321 245689999998874 46787642 24432112 2234445577899
Q ss_pred EEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 332 RYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 332 RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
|||||.-++.|. .+-| =+++|||-.
T Consensus 137 RyVRi~P~~w~~-~~i~--LRvELyGC~ 161 (351)
T 4ag4_A 137 RLVRFYPRADRV-MSVC--LRVELYGCL 161 (351)
T ss_dssp EEEEEEEECSSS-CCCC--BEEEEEEEE
T ss_pred EEEEEEEEEccC-CceE--EEEEEeccc
Confidence 999999999531 2445 588899874
No 74
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=78.07 E-value=2.4 Score=48.37 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=67.3
Q ss_pred CcEEEEEecceeeecEEEEeecc--cccCCCCeEEEEeeccCCCCCceeeE------EEEeecc-ccceeeeCCCCceEE
Q 006838 262 GKFVVIELGEETLVDTVKIANFE--HYSSNFKEFELSGSLSYPTEVWSPLG------KFVATNV-KQLQSFKLPEPKWVR 332 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE--~fSS~pKdF~VsgS~~YPt~~W~~LG------~F~a~N~-R~~Q~F~L~~~~w~R 332 (629)
..|+-|.|-+...|..|.+.=-- ....-++.|+|..|. +...|..+- .|..... .....-.+..|..+|
T Consensus 665 ~qwLQVDLg~~~~VtgV~tQG~~~~~~~~~VtsY~l~yS~--DG~~W~~y~~~g~~kvF~GN~D~~t~v~~~l~~pi~AR 742 (770)
T 2r7e_B 665 KEWLQVDFQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQ--DGHQWTLFFQNGKVKVFQGNQDSFTPVVNSLDPPLLTR 742 (770)
T ss_dssp SCCEEECCSSCCCBCCEEECCCCCTTCCCCCCEEEECCBS--STTCBCCCBCSSSBCCEECCSCSSSCEEECCSSCCCCS
T ss_pred CceEEEccccceEEEEEEEeCCcCcCcccceEEEEEEEEc--CCCcEEEEecCCceeecccCCCCCceEEEEcCCCEEEE
Confidence 46999999999999999875321 134578999999987 457888763 2543222 223455677788999
Q ss_pred EEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 333 YLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 333 YLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
||||.-++.+| +-| -+++|||-.
T Consensus 743 yVRi~p~~w~~--~i~--mR~ElyGC~ 765 (770)
T 2r7e_B 743 YLRIHPQSWVH--QIA--LRMEVLGCE 765 (770)
T ss_dssp BEEEEECSCSS--SCC--BCEECCBCC
T ss_pred EEEEEEEecCC--CeE--EEEEEEccC
Confidence 99999999876 455 699999963
No 75
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=77.70 E-value=8.8 Score=41.54 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=64.8
Q ss_pred CCcEEEEEecceeeecEEEEeecc--------cccCCCCeEEEEeeccCCCCCceeeEE--------EEeeccc-cceee
Q 006838 261 AGKFVVIELGEETLVDTVKIANFE--------HYSSNFKEFELSGSLSYPTEVWSPLGK--------FVATNVK-QLQSF 323 (629)
Q Consensus 261 ~~kfVVIELcEeI~V~~I~IANfE--------~fSS~pKdF~VsgS~~YPt~~W~~LG~--------F~a~N~R-~~Q~F 323 (629)
...|+-|.|-+...|..|.+.--- ....-++.|+|..|. +...|..+-. |.....+ ....-
T Consensus 462 ~~qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~~S~--dg~~W~~~~~~~~~~~~vf~GN~d~~t~~~~ 539 (579)
T 2qqk_A 462 GEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSL--NGKDWEYIQDPRTQQPKLFEGNMHYDTPDIR 539 (579)
T ss_dssp TTCCEEEEEEEEEEEEEEEEECBC---------CCBCEEEEEEEEES--SSSCCEECBCTTTSSBCCEECCSSSSSCEEE
T ss_pred ccceEEEecCCceEEEEEEeCCCCCCCCccccccceeeEEEEEEEEc--CCCceeEEEcCCCCceeeeeCccCCCCcccc
Confidence 356999999999999999886321 234567889999987 4578887632 4432111 11222
Q ss_pred eCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccchH
Q 006838 324 KLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAI 361 (629)
Q Consensus 324 ~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t~v 361 (629)
.++ |.-+|||||.-++.|+. +-| =||+|||-..-
T Consensus 540 ~l~-pi~aRyVRi~p~~w~~~-~i~--mR~El~gc~~~ 573 (579)
T 2qqk_A 540 RFD-PIPAQYVRVYPERWSPA-GIG--MRLEVLGCDWT 573 (579)
T ss_dssp EEE-EEEEEEEEEEEEEEBTT-BCC--BEEEEEEECC-
T ss_pred ccC-ceEEEEEEEEcceeccC-CcE--EEEEeecCCCc
Confidence 233 68899999999998754 356 59999997643
No 76
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.26 E-value=11 Score=41.82 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHhhhhhhc
Q 006838 549 SMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 549 ~~LR~~Ve~v~~~q~~mE 566 (629)
.+||..|+.++.+++-||
T Consensus 134 rvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555554444
No 77
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=77.16 E-value=27 Score=30.03 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=40.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhchhh--h-hHHHHHHHHHHHHHHHhhH-HHHHHHHHHhh
Q 006838 502 ISLLLEKSKLELEELVKWRETMERGLSDL--E-SWKTVVSFRVNELIKENSM-LRIDVEKVSSD 561 (629)
Q Consensus 502 ~~~~Lek~~aeI~~L~e~K~~~ek~~~~l--~-swks~VSsqLd~l~reN~~-LR~~Ve~v~~~ 561 (629)
....|..+...+.+..+.=++|+-|+..+ . +-|..+.++|.+-.+|... |+.++.++...
T Consensus 32 Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d~ 95 (97)
T 3onj_A 32 RNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVDS 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34455555555666666556666666555 2 3577888888888888888 88888877653
No 78
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=75.88 E-value=6.2 Score=43.09 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=63.2
Q ss_pred CcEEEEEecceeeecEEEEee---cc-cccCCCCeEEEEeeccCCCCCceeeE------EEEeec-cccceeeeCCCCce
Q 006838 262 GKFVVIELGEETLVDTVKIAN---FE-HYSSNFKEFELSGSLSYPTEVWSPLG------KFVATN-VKQLQSFKLPEPKW 330 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IAN---fE-~fSS~pKdF~VsgS~~YPt~~W~~LG------~F~a~N-~R~~Q~F~L~~~~w 330 (629)
..|+-|.|-+...|..|...= .+ ....-++.|+|.-|. +...|...- .|.... ....-.-.++.|..
T Consensus 305 ~qwlqVDl~~~~~it~v~tQG~~~~~~~~~~~v~~y~v~~s~--dg~~w~~y~~~~~~~vf~GN~d~~~~v~~~l~~pi~ 382 (577)
T 4gz9_A 305 KEWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYRVDISS--NGEDWISLKEGNKAIIFQGNTNPTDVVLGVFSKPLI 382 (577)
T ss_dssp TCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEES--SSSSCEECBSSSSBCCEECCSSSSSCEEEEEEEEEE
T ss_pred CeEEEEcCCCEEEEEEEEccCCCCCCCCcceeEEEEEEEEEc--CCCcEEEEecCCCceEEeCCCCCCcEeEeecCCCcE
Confidence 469999999999999998842 12 223357889998887 346787542 233211 11222334556789
Q ss_pred EEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 331 VRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 331 ~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+|||||.-++.|+ +.| -+|+|||-.
T Consensus 383 aryvRi~p~~~~~--~~~--mR~El~Gc~ 407 (577)
T 4gz9_A 383 TRFVRIKPVSWET--GIS--MRFEVYGCK 407 (577)
T ss_dssp EEEEEEEEEEEES--SCC--BEEEEEEEC
T ss_pred EEEEEEEeEeccc--cEE--EEEEecccc
Confidence 9999999999987 466 489999964
No 79
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.77 E-value=19 Score=30.76 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 006838 461 RILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMER 525 (629)
Q Consensus 461 KiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek 525 (629)
..+-+||+.+|..-+.|++-|+.+.++..+.-.+=+..-..+..+++-+--.|-+|.|-|+.++|
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34568999999999999998888888776655444443344555555554556777777777765
No 80
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.61 E-value=53 Score=32.27 Aligned_cols=35 Identities=11% Similarity=-0.107 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
.+++.++..+...+.+.++++.++.......+.++
T Consensus 35 ~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i 69 (256)
T 3na7_A 35 DKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTL 69 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433333333
No 81
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=73.44 E-value=15 Score=43.73 Aligned_cols=11 Identities=45% Similarity=0.827 Sum_probs=7.3
Q ss_pred CCceEEEEEEE
Q 006838 327 EPKWVRYLKLN 337 (629)
Q Consensus 327 ~~~w~RYLKle 337 (629)
+|+|+|.||=.
T Consensus 655 ~phfVRCIkPN 665 (1080)
T 2dfs_A 655 TPHYVRCIKPN 665 (1080)
T ss_dssp EEEEEEEECCC
T ss_pred CCeeEEEecCC
Confidence 45788877743
No 82
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=73.29 E-value=4 Score=32.44 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccch
Q 006838 533 WKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKEL 570 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~l 570 (629)
|-..++.+.+.|..+|..|+.+|+.++++...|.+..+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667888899999999999999999999988876544
No 83
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=73.14 E-value=3.8 Score=46.81 Aligned_cols=92 Identities=18% Similarity=0.262 Sum_probs=65.4
Q ss_pred CCcEEEEEecceeeecEEEEeec--ccccCCCCeEEEEeeccCCCCCceeeE--------EEEeecc--ccceeeeCCCC
Q 006838 261 AGKFVVIELGEETLVDTVKIANF--EHYSSNFKEFELSGSLSYPTEVWSPLG--------KFVATNV--KQLQSFKLPEP 328 (629)
Q Consensus 261 ~~kfVVIELcEeI~V~~I~IANf--E~fSS~pKdF~VsgS~~YPt~~W~~LG--------~F~a~N~--R~~Q~F~L~~~ 328 (629)
...|+-|.|-+...|..|.+.=. +....-++.|+|..|.. ...|..+- .|.. |. .....-.+..|
T Consensus 505 ~~qwLQVDLg~~~~Vt~V~tQG~~~~~~~~~v~sY~I~yS~D--G~~W~~y~~~~~g~~~vF~G-N~D~~tvv~~~l~~p 581 (770)
T 2r7e_B 505 PFSWIKVDLLAPMIIHGIKTQGARQKFSSLYISQFIIMYSLD--GKKWQTYRGNSTGTLMVFFG-NVDSSGIKHNIFNPP 581 (770)
T ss_dssp SCCCEEEEEEEEEEECBCCCCCEECSSSEECCSEEEEEEESS--SSSCBCCCCSSSSSSCCCCC-CSSTTCCCCCCCSSC
T ss_pred CCceEEecCCceEEEEEEEEcccCcCCcccceEEEEEEEecC--CCccEEeecccccceeeecC-CCCCCceeEEeccCc
Confidence 35699999999999999988421 23345689999999984 47787652 1221 21 11234456677
Q ss_pred ceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 329 KWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 329 ~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
.-+|||||..++.+|. -| -+|+|||..
T Consensus 582 i~ARyVRi~p~~~~~~--~~--mRvElyGc~ 608 (770)
T 2r7e_B 582 IIARYIRLHPTHYSIR--ST--LRMELMGCD 608 (770)
T ss_dssp EEEEEEEEEEEECSSS--CE--ECCCCBCCT
T ss_pred eeEeEEEEeccccccc--ce--eeeeccccc
Confidence 8999999999999874 34 679999985
No 84
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.09 E-value=17 Score=32.52 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=52.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 486 QRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 486 ~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
.+.++.+..-..+++.+.-.++.+..+|..+..++...+.-+.|.+ ...+.++.++......|-.++.+++.+.+..
T Consensus 25 ~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e---~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 25 GRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE---QRGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444555555566777777777777777777777777777776665 3444455555444444554554444333211
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006838 566 ESKELAVLSVSLFFACFAIFKLVSARLSTLLRA 598 (629)
Q Consensus 566 EnK~laVl~isl~f~~la~~~l~~~~~~~~~~~ 598 (629)
.+++ =-|-=+|+.+|+=...||-
T Consensus 102 -l~EY---------q~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 102 -LREY---------QELMNTKLALDVEIATYRK 124 (129)
T ss_dssp -HHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred -HHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 1111 1133456777776666663
No 85
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.90 E-value=21 Score=39.70 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPEL 495 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l 495 (629)
+.-|-++|..|..|.+-.+.|++.+...+...+..-
T Consensus 66 INELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~ 101 (562)
T 3ghg_A 66 INKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSA 101 (562)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhh
Confidence 334556666777777777777776666555555433
No 86
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A
Probab=71.33 E-value=0.83 Score=53.52 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=0.0
Q ss_pred ccccccccCceEeeccccc----cccCcccccCc----ccccccccCC-CCcEEEEEecceeeecEEEEeec----ccc-
Q 006838 221 YNYASAMKGAKLVAHNKEA----KGASNILGKDH----NKYLRNPCSV-AGKFVVIELGEETLVDTVKIANF----EHY- 286 (629)
Q Consensus 221 ~NYAS~d~GAkIl~sn~ea----kgasnIL~~nk----D~YMLnPCsa-~~kfVVIELcEeI~V~~I~IANf----E~f- 286 (629)
.|+| .|++|.+++... -+|...+..+. +++ |+. ...|+.|.|-+...|...+|.|- |--
T Consensus 800 ~NLA---l~k~ataSs~~~~~~~e~p~kaVDG~~~~~stKW----cs~~~~~wl~vDLg~~~tI~~~vv~hagaggE~~~ 872 (937)
T 3gdb_A 800 ENIV---PGATVIDSTFPKTEGGEGIEGMLNGTITSLSDKW----SSAQLSGSVDIRLTKSRTVVRWVMDHAGAGGESVN 872 (937)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc---CCCceEEecccccccccCHHHhcCCcccCCCCcc----ccCCCCceEEEECCCcEEEeEEEEEecccCccccc
Confidence 4555 567777766532 36777777665 356 444 45799999999999999999987 433
Q ss_pred --cCCCCeEEEEeeccCCCCCceeeEEEEeeccccceeeeCCCCceEEEEEEEEee
Q 006838 287 --SSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLS 340 (629)
Q Consensus 287 --SS~pKdF~VsgS~~YPt~~W~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LS 340 (629)
+=+-|||.+.+|+. ..+|..+-..+ .|...+-.-.|..|.=+|||||.+..
T Consensus 873 ~~~~NT~dF~Lq~s~d--~~~W~~vd~Vt-gN~~~vTd~~l~~pv~ARYvRL~Vt~ 925 (937)
T 3gdb_A 873 DGLMNTKDFDLYYKDA--DGEWKLAKEVR-GNKAHVTDITLDKPITAQDWRLNVVT 925 (937)
T ss_dssp --------------------------------------------------------
T ss_pred cccccccceEEEEecC--CCCeEEeeEee-CCcceeEEeecCCceeEEEEEEEEec
Confidence 45889999999984 68999875443 45544444567778889999999876
No 87
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.74 E-value=40 Score=31.05 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 511 LELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 511 aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
.++..|.+.-+..++++.+++.=-.....+++.+.+++..|+.++..++++...+|
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334433333444444444333334455666777777777777777766666555
No 88
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=70.27 E-value=17 Score=39.25 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=70.4
Q ss_pred CcEEEEEecceeeecEEEEeecccccCCCCeEEEEeeccCCCCCceeeEEEEeeccccceeeeCCCCceEEEEEEEEeec
Q 006838 262 GKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSH 341 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSH 341 (629)
..++.|+|.++..++.|.|.=.=-....++.|+|.+-+ ..+|+.|.+-++--.|++-.|+ +..++.|||.+++.
T Consensus 355 ~~~~~i~l~~~~~fn~v~l~E~I~~GQRV~~f~ve~~~---~g~W~~v~~GtTIG~kRi~rf~---~V~a~~lRl~I~~s 428 (443)
T 3gza_A 355 KKSLTLKLGKEQSVNYCIIQENIKNGERIRQYQIEAKV---NGKWQTVCKGESVGHKRIEKFE---PVEATALRLTVSES 428 (443)
T ss_dssp SSEEEEEEEEEEEEEEEEEEECGGGCCCEEEEEEEEEE---TTEEEEEEEESCCTTCEEEEEE---EEEEEEEEEEEEEE
T ss_pred CceEEEEcCCCceEeEEEEEecCCCCCcccEEEEEEEe---CCeEEEEEeeeeecceEEEecC---CeeeeEEEEEEEec
Confidence 36899999999999999997554567899999998865 4689999988766677788885 67899999999998
Q ss_pred cCCcceeeeeEEEEec
Q 006838 342 YGSEFYCTLSVVEVYG 357 (629)
Q Consensus 342 yGsE~YC~LS~vrVyG 357 (629)
=|.-. |+-|.||-
T Consensus 429 r~~p~---I~~~gvy~ 441 (443)
T 3gza_A 429 IALPD---IINFSAYS 441 (443)
T ss_dssp SSCCC---EEEEEEEC
T ss_pred CCCcE---EEEEEEEE
Confidence 88322 67788874
No 89
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.11 E-value=40 Score=29.05 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
-.|+|.+..|++.|-.++..++.+...+..|
T Consensus 62 r~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 62 RRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666666666666666666665555544
No 90
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=69.74 E-value=18 Score=31.52 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=37.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 006838 465 QKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEE 515 (629)
Q Consensus 465 qKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~ 515 (629)
+++.+|+.--.-|++-+.++..+|...+..++..+..+...|..+|+++..
T Consensus 12 ~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 12 NLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQ 62 (95)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777778888888999999988888888888888888888777543
No 91
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.59 E-value=19 Score=32.35 Aligned_cols=98 Identities=9% Similarity=0.168 Sum_probs=46.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 487 RQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 487 ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
+.++.+.....+++.+...++.+..+|..+..++...+.-+.|.+ .....++.+++.....|-.++.+++.+.+..
T Consensus 28 ~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e---~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q- 103 (131)
T 3tnu_A 28 TNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK---GRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ- 103 (131)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 334444445556666666666777777777777777776666654 3444444444444444444444444332211
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006838 567 SKELAVLSVSLFFACFAIFKLVSARLSTLLR 597 (629)
Q Consensus 567 nK~laVl~isl~f~~la~~~l~~~~~~~~~~ 597 (629)
.+++ =-|-=+|+.+|+=...||
T Consensus 104 l~EY---------q~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 104 NQEY---------KILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHH---------HHHHHHHHHHHHHHHHHH
Confidence 1111 113345677777666666
No 92
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=66.21 E-value=35 Score=28.90 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 006838 469 SLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELE 514 (629)
Q Consensus 469 sLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~ 514 (629)
+|..-.+-|+.-|.++..+|...+.+++..++.+...|..+|+++.
T Consensus 7 ~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 7 QLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQ 52 (86)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444567788888888988888888888888888888877753
No 93
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=65.12 E-value=71 Score=27.92 Aligned_cols=84 Identities=15% Similarity=0.253 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 006838 481 IKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSS 560 (629)
Q Consensus 481 iEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~ 560 (629)
+.+..+|+.+ +.++++.+..+..... ++..|++.++.+- ......|..=-+++.+-+..| .+-.+
T Consensus 13 l~~i~eR~~e-I~~Ie~~I~eL~~iF~----dla~lV~eQge~I------d~Ie~nv~~a~~~v~~g~~eL----~kA~~ 77 (109)
T 3hd7_B 13 LSEIETRHSE-IIKLENSIRELHDMFM----DMAMLVESQGEMI------DRIEYNVEHAVDYVERAVSDT----KKAVK 77 (109)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 3344444433 3455555554444443 4445555554443 122233333334444444444 34444
Q ss_pred hhhhhcccchhHHHHHHHH
Q 006838 561 DQANLESKELAVLSVSLFF 579 (629)
Q Consensus 561 ~q~~mEnK~laVl~isl~f 579 (629)
-|..-..|....+++++++
T Consensus 78 yqk~~rkk~~i~l~~~~i~ 96 (109)
T 3hd7_B 78 YQSKARRKKIMIIICCVIL 96 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCcceehHHHHHHH
Confidence 4444444444444444444
No 94
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=64.94 E-value=43 Score=28.12 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=35.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 006838 469 SLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELE 514 (629)
Q Consensus 469 sLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~ 514 (629)
+|..--.-|+.-|.+...+|...+.+++..++.+...|.++|.++.
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334567788899999999999999999998888888887754
No 95
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.59 E-value=11 Score=34.08 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=8.5
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q 006838 540 RVNELIKENSMLRIDVEKV 558 (629)
Q Consensus 540 qLd~l~reN~~LR~~Ve~v 558 (629)
++.++..+...+|.++++.
T Consensus 85 ~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 96
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=63.40 E-value=9.8 Score=30.65 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 533 WKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
|-..+..+.++|..+|..|+.+|+.++.+...+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777888889999999999999888877663
No 97
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=63.29 E-value=24 Score=38.49 Aligned_cols=89 Identities=18% Similarity=0.325 Sum_probs=60.1
Q ss_pred CcEEEEEecceeeecEEEEeecc--cccCCCCeEEEEeeccCCCCCceeeE--------EEEeeccccc---eeeeCCCC
Q 006838 262 GKFVVIELGEETLVDTVKIANFE--HYSSNFKEFELSGSLSYPTEVWSPLG--------KFVATNVKQL---QSFKLPEP 328 (629)
Q Consensus 262 ~kfVVIELcEeI~V~~I~IANfE--~fSS~pKdF~VsgS~~YPt~~W~~LG--------~F~a~N~R~~---Q~F~L~~~ 328 (629)
..|+-|.|-+...|..|.+.=-- ....-++.|+|.-|.. ...|...- .|....-+.. ..| +|
T Consensus 464 ~qwLqVDLg~~~~VtgV~tQG~~~~~~~~~vtsY~l~yS~D--g~~W~~~~~~~~~~~kvF~GN~d~~t~v~~~~---~P 538 (577)
T 4gz9_A 464 NEWLQVDLGDEKIVRGVIIQGGKHRENKVFMRKFKIAYSNN--GSDWKTIMDDSKRKAKSFEGNNNYDTPELRTF---SP 538 (577)
T ss_dssp SCCEEEEEEEEEEEEEEEEECEESSSCEECEEEEEEEEESS--SSSCEECBCTTSSSBCCEECCSSSSCCEEEEE---EE
T ss_pred CceEEEECCCcEEEEEEEEeCCCCCCcceeEEEEEEEEECC--CCCeEEEEcCCCCceEEeeCccCCCeeEEeec---CC
Confidence 36999999999999999884211 1123478899998873 56787651 2554322222 334 37
Q ss_pred ceEEEEEEEEe-eccCCcceeeeeEEEEeccc
Q 006838 329 KWVRYLKLNLL-SHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 329 ~w~RYLKle~L-SHyGsE~YC~LS~vrVyG~t 359 (629)
..+|||||.-. +.|+ +.| -||+|||=+
T Consensus 539 i~ARyvRi~P~~~~~~--~i~--lR~El~GC~ 566 (577)
T 4gz9_A 539 LSTRFIRIYPERATHS--GLG--LRMELLGCE 566 (577)
T ss_dssp EEEEEEEEEEEEEBTT--BEE--EEEEEEEEC
T ss_pred EEEEEEEEEEEEecCC--CEE--EEEEEcccC
Confidence 89999999865 4554 456 499999975
No 98
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.90 E-value=80 Score=29.88 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 006838 464 MQKVKSLEQNLSVLEDYIKELNQR------QQDVFPELDREITRISLLLEKSKLELEELVKWRETME 524 (629)
Q Consensus 464 mqKvksLE~N~Slle~YiEeln~r------y~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~e 524 (629)
++|.-.||-+++.+-+=++.+..+ +.+.+..++.+...++.-+..+..++.+....|...+
T Consensus 12 in~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE 78 (154)
T 2ocy_A 12 VDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAE 78 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555533222 1222333444444444555555555555544444444
No 99
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=61.83 E-value=78 Score=27.26 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQR 487 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~r 487 (629)
|-.-+.||+.||.-=.+|+.=|+.+..+
T Consensus 18 lAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 18 FANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455678999998888888777666543
No 100
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=61.58 E-value=40 Score=36.31 Aligned_cols=99 Identities=18% Similarity=0.144 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTV 536 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~ 536 (629)
+.-+..|-+.|.+|+-..+...+||..+...|...=+-... .++.+-++.+.+|.+.. .++.-+ ..
T Consensus 37 ~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~---n~~~~~q~Skkml~~~~----~~~~~~-------~~ 102 (411)
T 3ghg_C 37 DKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPN---MIDAATLKSRKMLEEIM----KYEASI-------LT 102 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTT---CHHHHHHHHHHHHHHHH----HHHHHH-------HH
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCc---chhhHHHHHHHHHHHHH----HHHHHH-------Hh
Confidence 55677788888888888889999999988888655332222 12333333333333221 112111 23
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 537 VSFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
.++++..|+......+..|.++.+.+..++.++
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 103 HDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555566666666666666654
No 101
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=61.32 E-value=16 Score=30.79 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 006838 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELV 517 (629)
Q Consensus 462 iLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~ 517 (629)
-|-+||-.||.-+.-.++-|++||.-- ..-++++.++...|..+...++++.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v----~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEAL----ADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367899999999999999999998755 6666667666666666655565554
No 102
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=61.30 E-value=13 Score=29.64 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 533 WKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
|-..+..+.+.|..+|..|+.+|..++++...|.+..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778889999999999999999999998887654
No 103
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=61.10 E-value=67 Score=27.40 Aligned_cols=27 Identities=7% Similarity=0.015 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQAN 564 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~ 564 (629)
..++..+..+...|+.+++.+..++..
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~ 96 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 104
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=60.65 E-value=90 Score=27.58 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 006838 513 LEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQA 563 (629)
Q Consensus 513 I~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~ 563 (629)
|++|+..=+.+-|.+.+=+-=|-.+.++|-...+|.+.|-..+.....+-.
T Consensus 48 i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE~~Dek~ 98 (101)
T 1d7m_A 48 LRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAIDEKS 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Confidence 444444444444444444444556677777788888888777766665543
No 105
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=58.38 E-value=13 Score=31.48 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 533 WKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
|...+..+.+.|.++|..|+.+|+.+..++..|.+-
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677899999999999999999999887654
No 106
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=57.44 E-value=25 Score=33.66 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 006838 481 IKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSS 560 (629)
Q Consensus 481 iEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~ 560 (629)
.+|+.+.+.+++.++..+...+...+...+.+|+.|..- ++.+ ..+++++.++...||.++...|-
T Consensus 69 T~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a-~~~D-------------eakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 69 TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA-SSPD-------------TAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSCC-------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888777766666666666665321 1222 23456677777777776665553
No 107
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=57.10 E-value=80 Score=28.42 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHH
Q 006838 464 MQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLE 512 (629)
Q Consensus 464 mqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~ae 512 (629)
|-++|+|.....++.|-++|.. .|++++..-..-+++|+++
T Consensus 4 ~~~lrqLkIktg~vkRL~KE~~--------~Y~kE~~~q~~kiekmk~e 44 (116)
T 3mxz_A 4 MATIRNLKIKTSTCKRIVKELH--------SYEKEVEREAAKTADMKDK 44 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHT
T ss_pred CccccchhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999975 3566666666667777764
No 108
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=57.00 E-value=1.1e+02 Score=27.30 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 006838 534 KTVVSFRVNELIKENSMLRI 553 (629)
Q Consensus 534 ks~VSsqLd~l~reN~~LR~ 553 (629)
|..+.+|++.|.-|...||.
T Consensus 85 r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555566655555553
No 109
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.83 E-value=15 Score=29.41 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 533 WKTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
|-..++.+.+.|..+|..|+.+|+.++++...|..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888899999999999999999988877654
No 110
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.20 E-value=60 Score=28.80 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
+.-.++..++...|+.++++++..+..||.
T Consensus 67 ~~a~~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 67 SVARQRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334456778888888888888888888886
No 111
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=55.71 E-value=1.2e+02 Score=32.62 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 537 VSFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
...++..|+.....++..|+++...+..++++.
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 344555555555555666666666666666554
No 112
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=55.55 E-value=1.2e+02 Score=33.21 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVF 492 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f 492 (629)
-+...|.+-=+.++..+.-|++=++++++.-+.++
T Consensus 86 ~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~ 120 (464)
T 1m1j_B 86 ELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMY 120 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHH
Confidence 34455544444455555556666666666555543
No 113
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=55.28 E-value=49 Score=27.20 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=25.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHH
Q 006838 504 LLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLR 552 (629)
Q Consensus 504 ~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR 552 (629)
.+|-...+.|..|+.-..++-.|+ ..+++++..|+.||..||
T Consensus 20 ~ALaaSeAkiQQLmkVN~~ls~El-------r~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 20 KALATSEAKVQQLMKVNSSLSDEL-------RKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHhHhhhHHH-------HHHHHHHHHHHhhhhhhc
Confidence 344455566666666666665555 445566677777777776
No 114
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=55.20 E-value=30 Score=32.32 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHH-HHHH---------HHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYI-KELN---------QRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERG 526 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~Yi-Eeln---------~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~ 526 (629)
|.-+|-|++==++-+.+.+-+..-= +++- .....+++.|++.+..+.+++-++=..|-.+.=..+.+.++
T Consensus 15 d~~lK~L~~~Ek~~~~~~~kl~~~n~~el~~iekGFL~k~l~~ea~kkldKrik~~~E~~MK~LE~LDsl~i~~~~t~~~ 94 (137)
T 1t7s_A 15 DAGFKMLMQYEKHNLSNLQKAYDLNLRDVADLERGFLEKPKQVEMGKKLEKKVKYFNEEAERHLETLDGMNIITETTPEN 94 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEECCCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhccHhHHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhh
Confidence 5667777665555555555443222 2222 34466778888888888887777644444443233334444
Q ss_pred -chhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 527 -LSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 527 -~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+.+.+.-+..+=-.++.+...|..|+.+|.+..++.
T Consensus 95 q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~i~~~~~~~ 131 (137)
T 1t7s_A 95 QAKRNREKRKTLVNGIQTLLNQNDALLRRLQEYQSVL 131 (137)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 666677777777788889999999999998776543
No 115
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=53.42 E-value=2.1e+02 Score=29.65 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=6.9
Q ss_pred ccCChhhhhhhh
Q 006838 184 TYLNFDEFRNIT 195 (629)
Q Consensus 184 ~~~~~de~k~~~ 195 (629)
.|-++|||...+
T Consensus 139 ~P~Twdel~~~a 150 (471)
T 3mq9_A 139 PPKTWEEIPALD 150 (471)
T ss_dssp CCSBGGGHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 345667766644
No 116
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=52.87 E-value=1.3e+02 Score=26.95 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQDVF---PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTV 536 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~~f---~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~ 536 (629)
++-+-..++.|+-.+.-.+.-..+|...+.... .+|...|..-...+...-.....|...|..++..+.++.+=...
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666555554455444442222 22333333333333333333455555666666666555433333
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 537 VSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 537 VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
...+.++|....-.|-.++..+.+...++|
T Consensus 95 eee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555554444443
No 117
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=52.17 E-value=18 Score=26.57 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 536 VVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 536 ~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
.++.+.++|..+|..|+.+|+++++-.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 456788999999999999999998643
No 118
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.10 E-value=1.6e+02 Score=27.87 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchh
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSD 529 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~ 529 (629)
.+++.++.++...|..-++.=......+..+++|+.|
T Consensus 54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEe 90 (154)
T 2ocy_A 54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 90 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433322222223334444444443
No 119
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.82 E-value=1.1e+02 Score=40.70 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccch
Q 006838 498 EITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKEL 570 (629)
Q Consensus 498 el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~l 570 (629)
++..+...|++++++..+....|+.++.++ ..++.+|+...+-...|..|=.+=.+..+.++...-
T Consensus 2036 ~L~~le~~l~~L~~~~~~~~~ek~~L~~e~-------~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYATLIRETEQIKTES-------SKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 333333334444444444333444444333 445666666666666666666555555555554433
No 120
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=50.72 E-value=19 Score=31.04 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 536 VVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 536 ~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
....+.+.|.+||..||.+|+.+..++..|.+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999988877654
No 121
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.06 E-value=15 Score=29.06 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 539 FRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 539 sqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
+..|.|.+||..||.+++.+.++.+.+.+|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999888887776654
No 122
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.67 E-value=1.6e+02 Score=26.96 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHhhhchhhhhHHHHH---HHHHHHHHHHhhHHHHHH
Q 006838 490 DVFPELDREITRISLLLEKSKLELEELVKWR-ETMERGLSDLESWKTVV---SFRVNELIKENSMLRIDV 555 (629)
Q Consensus 490 ~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K-~~~ek~~~~l~swks~V---SsqLd~l~reN~~LR~~V 555 (629)
+.|.+-+.+-.--..-+.++++.|.....+. ..+.+--++++.|+..+ +.+++.|.++|..|..++
T Consensus 39 e~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 39 KGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 3333333333333333344444444443331 12322233444444443 566666677776666665
No 123
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.59 E-value=1.5e+02 Score=27.13 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
..|+.++.....-+..+|.++..++..-+...+ +++++.+++..|..++-++..++
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~--------------e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAK--------------EIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666555444444 44666677777777776665443
No 124
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=47.32 E-value=1.4e+02 Score=25.80 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=25.3
Q ss_pred CchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006838 455 PGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVK 518 (629)
Q Consensus 455 ~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e 518 (629)
||+.+ .-|-..++.|+..-. +.-.-+.+++++=..++..|...+++...|-+
T Consensus 2 ~~~~~-~~l~~eL~~l~~eE~-----------~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 2 PGSDS-EQLQRELKELALEEE-----------RLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp -CHHH-HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhH-HHHHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 45554 455555555444333 23333455555555555555555555554433
No 125
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=47.27 E-value=1.4e+02 Score=25.82 Aligned_cols=82 Identities=13% Similarity=0.081 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHH--H---HHHHHHHHHhHHHHHHHHHHHHHHhhhchhhh-hHHHHHHHHHHHHHHH
Q 006838 474 LSVLEDYIKELNQRQQDVFPELDRE--I---TRISLLLEKSKLELEELVKWRETMERGLSDLE-SWKTVVSFRVNELIKE 547 (629)
Q Consensus 474 ~Slle~YiEeln~ry~~~f~~l~~e--l---~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~-swks~VSsqLd~l~re 547 (629)
.++++.|=+++.....++-..+..- + .+....|..+...|.+..+-=++|+-|+.++- +-|..+.++|.+-.+|
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~d 93 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKD 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3566666666655555444444431 1 23334566666666666666667776665543 3456666677766666
Q ss_pred hhHHHHHH
Q 006838 548 NSMLRIDV 555 (629)
Q Consensus 548 N~~LR~~V 555 (629)
...|+.++
T Consensus 94 L~~lk~el 101 (102)
T 2qyw_A 94 LAKLHREV 101 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 66665544
No 126
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=47.07 E-value=1.3e+02 Score=28.31 Aligned_cols=37 Identities=5% Similarity=0.111 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 006838 478 EDYIKELNQRQQDVFPELDREITRISLLLEKSKLELE 514 (629)
Q Consensus 478 e~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~ 514 (629)
++|=+++-+.|.+.+..+|.++.++.-...++-++++
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666677777766666666544443
No 127
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.20 E-value=1.1e+02 Score=26.26 Aligned_cols=63 Identities=11% Similarity=0.194 Sum_probs=36.5
Q ss_pred HHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 506 LEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 506 Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
|+++-+.|...++-=.-+.-++.+++.=...++.+.+.+...-..|+.+.++++.++..-+.+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344433344443322222233556666666667777777777777777777777777665544
No 128
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.16 E-value=46 Score=28.30 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=42.0
Q ss_pred HHHHHHHH---HhhhhhHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHH
Q 006838 480 YIKELNQR---QQDVFPELD--REITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRID 554 (629)
Q Consensus 480 YiEeln~r---y~~~f~~l~--~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~ 554 (629)
+-+.+|.. +++.+|.+. ..+++..++-..+ .-|+.|++....+. .+++.|.++|..|+.+
T Consensus 17 RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~-~YI~~L~~~~~~l~--------------~~~~~L~~~n~~L~~r 81 (88)
T 1nkp_A 17 RRNELKRSFFALRDQIPELENNEKAPKVVILKKAT-AYILSVQAEEQKLI--------------SEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHH-HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 44444443 455677774 3566665544444 66888876664444 3457888999999999
Q ss_pred HHHHH
Q 006838 555 VEKVS 559 (629)
Q Consensus 555 Ve~v~ 559 (629)
++.++
T Consensus 82 l~~L~ 86 (88)
T 1nkp_A 82 LEQLG 86 (88)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98765
No 129
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26
Probab=44.83 E-value=1.4e+02 Score=28.15 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=64.6
Q ss_pred cccccccCCCCcEEEEEecceeeecEEEEeecccccCCCCeEEEEeecc----------CCCCCceeeEEEEeeccc-cc
Q 006838 252 KYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLS----------YPTEVWSPLGKFVATNVK-QL 320 (629)
Q Consensus 252 ~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS~~----------YPt~~W~~LG~F~a~N~R-~~ 320 (629)
.|+-.=|.. +--+-|-+-..+.+..|.|.--+- ++||.++++.-.. -|+.+|++ .... ..
T Consensus 50 ~~leSD~De-QLli~IPFt~~VKl~Si~i~~~~~--~~Pk~iKlf~N~~~ldFd~a~~~~p~Q~~el------~~~~~~g 120 (161)
T 1xoy_A 50 LNLESDADE-QLLIYIPFNQVIKLHSFAIKGPEE--EGPKTVKFFSNKEHMCFSNVNDFPPSDTAEL------TEENLKG 120 (161)
T ss_dssp CCEECSSCS-SEEEEEEEEEEECEEEEEEECCTT--TSEEEEEEEESCSCCCHHHHTTSCCSEEECC------CTTGGGT
T ss_pred ccCcCCCCc-eEEEEeecCCcEEEEEEEEECCCC--CCCcEEEEeeCCCCCChhhhccCCCceEEEC------CCCcCCC
Confidence 455555543 345667889999999999887665 7999999997521 13333322 1111 11
Q ss_pred eeeeCCCCce--EEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 321 QSFKLPEPKW--VRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 321 Q~F~L~~~~w--~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+.++|+-.+| +.-|-|=|-++||.+..+-|+.|+++|.+
T Consensus 121 ~~~~lr~vkFqnV~sLtlf~~~n~~g~e~T~I~~I~l~G~~ 161 (161)
T 1xoy_A 121 KPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST 161 (161)
T ss_dssp CCEECCTTTCSCEEEEEEEEEEETTCCSCCEESEEEEEECC
T ss_pred cEEeccceeEcccCEEEEEEecCCCCCccEEEEEEEEEecC
Confidence 4455544433 56677888899976666779999999964
No 130
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=44.69 E-value=1.7e+02 Score=30.99 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHh
Q 006838 460 LRILMQKVKSLE 471 (629)
Q Consensus 460 lKiLmqKvksLE 471 (629)
++.|.+|+..|.
T Consensus 11 ~~~~~~~~~~~~ 22 (365)
T 1gqe_A 11 IQDLTERSDVLR 22 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555554443
No 131
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=43.17 E-value=32 Score=25.37 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+.+..+.+.|..+|..|..+|+++++-.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4567788999999999999999998643
No 132
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=42.61 E-value=96 Score=29.42 Aligned_cols=82 Identities=18% Similarity=0.101 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHHH--------HhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHH
Q 006838 470 LEQNLSVLEDYIKELNQR--------QQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRV 541 (629)
Q Consensus 470 LE~N~Slle~YiEeln~r--------y~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqL 541 (629)
||.+++-|..|.--+... ..+.+..|++++..+..-+.....+|++-..-=+.+--|+.-++.=-..+..++
T Consensus 40 ~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl 119 (152)
T 3a7p_A 40 KEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKL 119 (152)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHH
Q 006838 542 NELIKENSML 551 (629)
Q Consensus 542 d~l~reN~~L 551 (629)
..++.||..|
T Consensus 120 ~kLq~EN~~L 129 (152)
T 3a7p_A 120 SDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 133
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.49 E-value=1.2e+02 Score=26.19 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 519 WRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 519 ~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
-|..+-.+++-.++=.....++|.+....|..|-.+|++++++...|+.-+
T Consensus 25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~ 75 (81)
T 1wt6_A 25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAEG 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 333444444444444455566777777777777777777777766654433
No 134
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=42.42 E-value=1.9e+02 Score=26.17 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=18.3
Q ss_pred HHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 006838 519 WRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDV 555 (629)
Q Consensus 519 ~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~V 555 (629)
.++...+.+..|..+-...+..|.+|++.-...+.+|
T Consensus 39 k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~v 75 (112)
T 1x79_B 39 SSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555544444444
No 135
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.31 E-value=86 Score=33.63 Aligned_cols=28 Identities=7% Similarity=-0.047 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
..++.+++.+......|+..|.++....
T Consensus 108 ~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 108 QQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3445556666666667777777776544
No 136
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=42.03 E-value=34 Score=25.06 Aligned_cols=28 Identities=4% Similarity=0.139 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
..++.++++|..+|..|..+|+++++-.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3567788999999999999999998643
No 137
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=41.85 E-value=34 Score=25.18 Aligned_cols=28 Identities=0% Similarity=0.067 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
+.+..++++|..+|..|..+|+++++-.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4567788999999999999999998643
No 138
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=41.18 E-value=1.6e+02 Score=24.85 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=40.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 490 DVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 490 ~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
.-|..++.++.++-..|++.....++|.+....+..+-.+|..+-..+....+.|.....-|-..|..+..+
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666665555555554444445555555555555555554443
No 139
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=40.48 E-value=3.2e+02 Score=28.25 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 513 LEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 513 I~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
+.+|.+.|..++++-..+.+=...+...|..-.-+...|+.+++.++.++.+...
T Consensus 143 ~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~~~ 197 (346)
T 2nrj_A 143 IEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYYKQ 197 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGGGC
T ss_pred HHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666554443333333344444444556899999999999884444
No 140
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=39.45 E-value=1.2e+02 Score=28.93 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=9.4
Q ss_pred HhhhhhHHHHHHHHHHHHH
Q 006838 470 LEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 470 LE~N~Slle~YiEeln~ry 488 (629)
||.-.+.+-.|+..++..-
T Consensus 26 ~e~v~~~~~~y~~~l~~~a 44 (191)
T 1nfn_A 26 WELALGRFWDYLRWVQTLS 44 (191)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554433
No 141
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=39.14 E-value=2.7e+02 Score=26.80 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHhhhchhhhhHHHHHH---------HHHHHHHHHhhHHHHHHHHHHhh-------hhhhcccchhH
Q 006838 509 SKLELEELVKWRETMERGLSDLESWKTVVS---------FRVNELIKENSMLRIDVEKVSSD-------QANLESKELAV 572 (629)
Q Consensus 509 ~~aeI~~L~e~K~~~ek~~~~l~swks~VS---------sqLd~l~reN~~LR~~Ve~v~~~-------q~~mEnK~laV 572 (629)
++.+|+...+.|...+|.-.++.++...+. ..+.+...+....|...+..+-+ +......+++-
T Consensus 119 ~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k~~e~~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le 198 (265)
T 2q12_A 119 KERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLE 198 (265)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357799999999999999999988888753 22233334444444433322211 11122224555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006838 573 LSVSLFFACFAIFKLVSARL 592 (629)
Q Consensus 573 l~isl~f~~la~~~l~~~~~ 592 (629)
.++.++-+.+.+++-..+++
T Consensus 199 ~l~~~~~a~~~ff~~g~e~~ 218 (265)
T 2q12_A 199 PLLGYMQAQISFFKMGSENL 218 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777666654
No 142
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.91 E-value=65 Score=35.29 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhchh
Q 006838 499 ITRISLLLEKSKLELEELVKWRETMERGLSD 529 (629)
Q Consensus 499 l~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~ 529 (629)
+-.++.....++.++.+|+..|..+.|+++.
T Consensus 35 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 35 IIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555543
No 143
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.09 E-value=1.4e+02 Score=23.02 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHhHHHHHHH
Q 006838 477 LEDYIKELNQRQQDVFPELDR---EITRISLLLEKSKLELEEL 516 (629)
Q Consensus 477 le~YiEeln~ry~~~f~~l~~---el~~~~~~Lek~~aeI~~L 516 (629)
+++++++++.++...-..++. .+.+...-|++++.+|..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665555443333333 3333333444444444444
No 144
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=37.84 E-value=1.6e+02 Score=32.18 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHH----HHHHHHHHHHhhHH
Q 006838 477 LEDYIKELNQRQQDV-FPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVV----SFRVNELIKENSML 551 (629)
Q Consensus 477 le~YiEeln~ry~~~-f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~V----SsqLd~l~reN~~L 551 (629)
.+.+.+.+..|-.+. ..+++ ++-.++.....+..++.+|+..|..+.|+++.+..=+... ....++|..+...|
T Consensus 50 ~~~v~~~l~~R~~~~~~~~~~-~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l 128 (501)
T 1wle_A 50 PEDAARALDLRKGELRSKDLP-GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREI 128 (501)
T ss_dssp HHHHHHHHHHHTCSCCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHH
Confidence 445555555554321 12232 4555566666666677777777777776665432100000 01334555555555
Q ss_pred HHHHHHHHhhhhhhccc
Q 006838 552 RIDVEKVSSDQANLESK 568 (629)
Q Consensus 552 R~~Ve~v~~~q~~mEnK 568 (629)
+.++..+..+...++.+
T Consensus 129 ~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 129 RKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555554444433
No 145
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=37.59 E-value=1.7e+02 Score=26.26 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=46.6
Q ss_pred HHHHHHHhhhh---hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006838 482 KELNQRQQDVF---PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKV 558 (629)
Q Consensus 482 Eeln~ry~~~f---~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v 558 (629)
.|+..+|+.++ .-||++=+...=.++.+|..|.++.|.=-++-++..+- ...++.+.|....|..++..+
T Consensus 5 ~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK-------~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 5 AEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEK-------NKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 45556677666 56777777777777778888888777555555555333 445666666666666666666
Q ss_pred Hhhh
Q 006838 559 SSDQ 562 (629)
Q Consensus 559 ~~~q 562 (629)
+...
T Consensus 78 k~~L 81 (103)
T 4h22_A 78 KEAL 81 (103)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6444
No 146
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=37.58 E-value=40 Score=27.20 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 534 KTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 534 ks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
-..+..++++|..+|..|+.+|+.+++.+
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888999999999999999998654
No 147
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=37.53 E-value=2e+02 Score=24.68 Aligned_cols=63 Identities=13% Similarity=0.344 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh----------HHHHHHHHHHHHHHHhHHHHHHHHH
Q 006838 456 GDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFP----------ELDREITRISLLLEKSKLELEELVK 518 (629)
Q Consensus 456 gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~----------~l~~el~~~~~~Lek~~aeI~~L~e 518 (629)
++..+--.+++|..+..++..+...++++...+...+. +|+.....+...-..++..|+.|..
T Consensus 3 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~ 75 (127)
T 1ez3_A 3 RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQ 75 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999999999999999988874 4555555555666666777777643
No 148
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=37.47 E-value=3e+02 Score=27.69 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHh-----------hhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006838 498 EITRISLLLEKSKLELEELVKWRETME-----------RGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 498 el~~~~~~Lek~~aeI~~L~e~K~~~e-----------k~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
.++.....+..++..|.++.+--+.|+ .+..|++-.--.+-.|.|++.+....|+..|..-.
T Consensus 175 ~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TE 247 (261)
T 3rkg_A 175 DLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKSPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTE 247 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445557778888888666663 34445554445566677777777777766664443
No 149
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=36.29 E-value=46 Score=26.17 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
..++.++.+|..+|..|+.+++.++...
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778899999999999999998654
No 150
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=35.15 E-value=1.2e+02 Score=25.83 Aligned_cols=33 Identities=6% Similarity=0.090 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 536 VVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 536 ~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
.+..|+++|.+|...||-.||+...++..|..+
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 356788888888888888888888777777653
No 151
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.13 E-value=2.4e+02 Score=25.03 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhh-------hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 006838 461 RILMQKVKSLEQN-------LSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEE 515 (629)
Q Consensus 461 KiLmqKvksLE~N-------~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~ 515 (629)
.-|...|++|+.. -.-|+.-|.+...+|...+.+++..+..+...|..+|.++..
T Consensus 39 ~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344444555443 345788899999999999999999999999888888877543
No 152
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=35.06 E-value=89 Score=33.60 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 006838 478 EDYIKELNQRQQ-DVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVE 556 (629)
Q Consensus 478 e~YiEeln~ry~-~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve 556 (629)
+.+.+.|..|.. +. .++=.++-.++..-.++..++.+|+..|..+.|+++.+..= ....++|..+...|+.++.
T Consensus 12 ~~~~~~~~~R~~~~~-~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~----~~~~~~l~~~~~~~~~~~~ 86 (455)
T 2dq0_A 12 ELVKNDLIKRGELEK-VKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKK----GEPVDELLAKSREIVKRIG 86 (455)
T ss_dssp HHHHHHHHHHTCGGG-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cccHHHHHHHHHHHHHHHH
Confidence 445555555542 11 11123455555566666667777777777777666543110 1123445555555555555
Q ss_pred HHHhhhhhhccc
Q 006838 557 KVSSDQANLESK 568 (629)
Q Consensus 557 ~v~~~q~~mEnK 568 (629)
.+.+++..++.+
T Consensus 87 ~~~~~~~~~~~~ 98 (455)
T 2dq0_A 87 ELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
No 153
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=34.83 E-value=2.2e+02 Score=24.40 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 497 REITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 497 ~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
.+...+...|.+++..|.+|....+.+-.......+-+..+..-.++..+--..+|.+++.+...-
T Consensus 12 ~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~ 77 (127)
T 1ez3_A 12 EQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSI 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433332222222333333344444444444455555555555443
No 154
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.53 E-value=1.7e+02 Score=23.54 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 006838 478 EDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEEL 516 (629)
Q Consensus 478 e~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L 516 (629)
.+.-+|+..-|...+.++.....+-...|...|.+|.+|
T Consensus 23 ~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~el 61 (77)
T 3trt_A 23 AKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEY 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666666555555
No 155
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=34.37 E-value=2.8e+02 Score=27.20 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDY-IKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKT 535 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~Y-iEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks 535 (629)
++.|..|--|++. -+...-+.| +.++++.. ..|++....-..+|..--.+++.|..-...+.+++...++|-.
T Consensus 72 e~ll~~lqtklr~--~~~~ppeg~~~~di~~~W----~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~L~ 145 (235)
T 2odv_A 72 KGIYQSLEGAVQA--GQLKVPPGYHPLDVEKEW----GKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLN 145 (235)
T ss_dssp HHHHHHHHHHHHT--TSSCCCTTCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555553 211111111 44555554 4444444444444444334444455555667777777888877
Q ss_pred HHHHHH
Q 006838 536 VVSFRV 541 (629)
Q Consensus 536 ~VSsqL 541 (629)
..+..|
T Consensus 146 ~~~~~L 151 (235)
T 2odv_A 146 QADALL 151 (235)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
No 156
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=34.21 E-value=1.9e+02 Score=23.93 Aligned_cols=32 Identities=9% Similarity=0.029 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETME 524 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~e 524 (629)
.-|..+......-++.....+++..+...+.+
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E 40 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLE 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444444444444444444554444443333
No 157
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.95 E-value=1.5e+02 Score=31.80 Aligned_cols=43 Identities=7% Similarity=0.172 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREIT 500 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~ 500 (629)
.+.-+|-+++++..-|--+..+|.++|.+||-.+=..++..+.
T Consensus 92 ~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 92 NIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445566778889999999999999999999766666666555
No 158
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=33.37 E-value=1.8e+02 Score=27.21 Aligned_cols=12 Identities=8% Similarity=0.243 Sum_probs=5.2
Q ss_pred HHHHHhhhchhh
Q 006838 519 WRETMERGLSDL 530 (629)
Q Consensus 519 ~K~~~ek~~~~l 530 (629)
.|+.+.+++.++
T Consensus 100 Lr~~L~~d~Eel 111 (165)
T 1gs9_A 100 AQARLGADMEDV 111 (165)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 159
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.33 E-value=3.1e+02 Score=25.80 Aligned_cols=48 Identities=23% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006838 467 VKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVK 518 (629)
Q Consensus 467 vksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e 518 (629)
|.+||..+.-. .++-.++|-.+-. ++.+|.+...-++...+.+.+|.+
T Consensus 2 ~~~lE~qlkea---ae~ad~KyeEvaR-~E~dLEraEERae~aE~k~~eLEe 49 (155)
T 2efr_A 2 MKQLEDKVEEL---LSKNYHLENEVAR-LKKLLERAEERAELSEGKSAELEE 49 (155)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444444 5777777776666 777777766666666555555544
No 160
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=32.76 E-value=1.7e+02 Score=30.73 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 006838 498 EITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSS 560 (629)
Q Consensus 498 el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~ 560 (629)
++.++..=-+.+++.|.+|.+.+.+++.++..... ..-.+.|+++.|+-++-++++
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAA-------EYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhccChHHHHHHH
Confidence 56667777777899999999999999977633321 222466666777766666665
No 161
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=32.50 E-value=59 Score=23.98 Aligned_cols=27 Identities=4% Similarity=0.206 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
+.+..++++|..+|..|..+|+++++-
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 356778899999999999999998864
No 162
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=32.13 E-value=1.9e+02 Score=24.97 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006838 492 FPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVS 559 (629)
Q Consensus 492 f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~ 559 (629)
+.+++..+.+...+|+.|..|++++- -+-|..+.++|.+-.+|...|+.++.+++
T Consensus 40 i~~ie~~l~EA~ell~qMelE~r~~p-------------~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 40 VANVEKQLEEARELLEQMDLEVREIP-------------PQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSC-------------TTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666544444441 12467777788888888888887777655
No 163
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=31.80 E-value=2.3e+02 Score=28.26 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhH
Q 006838 529 DLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAV 572 (629)
Q Consensus 529 ~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laV 572 (629)
+.+.--.++-.+||+|++++ .+..++++ +|.-+++-+.+-
T Consensus 126 e~RLiYDHYKlKvdELEK~~-KdSeKI~R---NQsKLssAEtaY 165 (294)
T 3caz_A 126 KYRERYDHYKVKLDNLEKKN-KDQERIER---NQQKFKDAEAAY 165 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CCHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhcc-chHHHHHH---hHHHhhhHHHHH
Confidence 34444466788999999987 55555544 444455444433
No 164
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=31.78 E-value=56 Score=26.09 Aligned_cols=30 Identities=37% Similarity=0.378 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 538 SFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
-.|++.|.+||.-||.+++.-......+|+
T Consensus 9 ~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ 38 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELEDNSNHLTKLET 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHHHHHh
Confidence 346777777777777777665555554444
No 165
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=31.52 E-value=62 Score=23.85 Aligned_cols=28 Identities=4% Similarity=0.089 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
..++.+.++|..+|..|..+|.++++-.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3466788899999999999999988643
No 166
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=31.26 E-value=2.7e+02 Score=24.51 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=29.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHH
Q 006838 466 KVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLE 512 (629)
Q Consensus 466 KvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~ae 512 (629)
++++|.....++.|-++|.. -|+++...-..-|++++++
T Consensus 5 ~l~qLkIkt~~vkRL~KE~~--------~Y~kE~~~q~~riek~k~e 43 (108)
T 1h7c_A 5 RVRQIKIKTGVVRRLVKERV--------MYEKEAKQQEEKIEKMRAE 43 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhc
Confidence 68999999999999998874 3566666666667777665
No 167
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=30.94 E-value=4.4e+02 Score=26.75 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=53.3
Q ss_pred HHH-hHHHHHHHHHHHHHHhhhchhhhhHHHHH---------HHHHHHHHHHhhHHHHHHHHHH-------hhhhhhccc
Q 006838 506 LEK-SKLELEELVKWRETMERGLSDLESWKTVV---------SFRVNELIKENSMLRIDVEKVS-------SDQANLESK 568 (629)
Q Consensus 506 Lek-~~aeI~~L~e~K~~~ek~~~~l~swks~V---------SsqLd~l~reN~~LR~~Ve~v~-------~~q~~mEnK 568 (629)
|++ ++.+|+...+.|...+|.-.++.++...+ +..+++...+....|...+..+ ++.......
T Consensus 115 L~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~~~~k~k~~e~~~~ea~~~l~~~rk~f~~~~ldy~~~l~~l~~rk~~ 194 (385)
T 2q13_A 115 ITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKI 194 (385)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 46678888899999999888888887774 2233444444444444333222 222233344
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 006838 569 ELAVLSVSLFFACFAIFKLVSAR 591 (629)
Q Consensus 569 ~laVl~isl~f~~la~~~l~~~~ 591 (629)
+++-.++.++-+.+..+....++
T Consensus 195 e~le~l~~~~~a~~~ff~~g~~~ 217 (385)
T 2q13_A 195 ALLEPLLGYMQAQISFFKMGSEN 217 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777877888888776665
No 168
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.91 E-value=1.6e+02 Score=25.79 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
..+..+|+++......|+.++-+++.-.+.+|++
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3447788888888888888888887666666544
No 169
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.63 E-value=1.8e+02 Score=25.74 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhhhhH
Q 006838 462 ILMQKVKSLEQNLSV 476 (629)
Q Consensus 462 iLmqKvksLE~N~Sl 476 (629)
.+-++++.||...+.
T Consensus 9 ~lre~l~~le~~~~~ 23 (97)
T 2eqb_B 9 QLKEDYNTLKRELSD 23 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344445555544433
No 170
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=30.63 E-value=2.7e+02 Score=26.92 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 006838 475 SVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVV 537 (629)
Q Consensus 475 Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~V 537 (629)
.+++.|+..+.. +.+++.++..+...++.+..-...|.+.|..+...+..+++-...+
T Consensus 52 dlL~~~v~~l~~-----~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 52 HQLELYVTKFNP-----LTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKY 109 (192)
T ss_dssp HHHHHHGGGGSC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchh-----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665542 2333333333333444433333444444444444444444333333
No 171
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=30.12 E-value=3e+02 Score=24.66 Aligned_cols=61 Identities=8% Similarity=0.171 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 463 LMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 463 LmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
++..++.+-.++.-..+|++.... ++ ...+....-+...++.+.++|++|++.++.++..+
T Consensus 51 ~I~~lr~~G~sL~eIk~~l~~~~~--~~--~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 51 FTRQMRRAGLSIEALIDYLALFRE--GE--HTLEARAELLKKQRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH--CG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhc--cC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777666777764322 11 12222233334444445555555555555555444
No 172
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=29.83 E-value=3.6e+02 Score=25.40 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhh
Q 006838 459 VLRILMQKVKSLEQN 473 (629)
Q Consensus 459 VlKiLmqKvksLE~N 473 (629)
=++.+.+.+|+||..
T Consensus 50 eL~~v~~nlKsLE~s 64 (155)
T 2efr_A 50 ELKTVTNNLKSLEAQ 64 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhh
Confidence 345555666666553
No 173
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.77 E-value=72 Score=24.42 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHh
Q 006838 513 LEELVKWRETMERGLSDLESWKTVVSFRVNELIKEN 548 (629)
Q Consensus 513 I~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN 548 (629)
+.++.++.+.+||.+ ..++.+||.|.+..
T Consensus 11 vsel~~r~e~LE~Ri-------~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 11 ISDLNERSEDFEKRI-------VTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHH-------HHHHHHHHHHHHHH
Confidence 344444444444444 33344455444433
No 174
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.72 E-value=54 Score=25.10 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 006838 474 LSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELE 514 (629)
Q Consensus 474 ~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~ 514 (629)
+++.-+-+-|+|.|+ .+||+++..+...|+.+.+.+.
T Consensus 4 Qn~mydlvsel~~r~----e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 4 MNIMYDMISDLNERS----EDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp -CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777888888 7888888888888887766554
No 175
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=29.36 E-value=3.2e+02 Score=24.72 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--------------hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006838 458 TVLRILMQKVKSLEQNLSVLEDYIKELNQRQQ--------------DVFPELDREITRISLLLEKSKLELEELVKWRETM 523 (629)
Q Consensus 458 SVlKiLmqKvksLE~N~Slle~YiEeln~ry~--------------~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ 523 (629)
.-.+.+++|-+.||........-++.++..=. .....|......+......-+..|.+-... .++
T Consensus 36 ~~v~~ll~kh~~le~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~l-~qf 114 (216)
T 1u5p_A 36 ASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRL-HQF 114 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 34567888888888888777777777765322 223334444444444444444445433332 356
Q ss_pred hhhchhhhhHHHHH
Q 006838 524 ERGLSDLESWKTVV 537 (629)
Q Consensus 524 ek~~~~l~swks~V 537 (629)
..++.++..|-...
T Consensus 115 ~~~~~~~~~Wl~e~ 128 (216)
T 1u5p_A 115 FRDMDDEESWIKEK 128 (216)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 67777888887665
No 176
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=28.79 E-value=2.1e+02 Score=25.95 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=27.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 006838 468 KSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMER 525 (629)
Q Consensus 468 ksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek 525 (629)
++|+.-.++..+|.+.++.-=...-+++..--.++...|+.++.+|.+|.+-=..+++
T Consensus 38 ~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~ 95 (130)
T 4dnd_A 38 KAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEA 95 (130)
T ss_dssp HHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666544332211112344444455555666677777777654444443
No 177
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.53 E-value=1.5e+02 Score=31.41 Aligned_cols=82 Identities=12% Similarity=0.223 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006838 478 EDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEK 557 (629)
Q Consensus 478 e~YiEeln~ry~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~ 557 (629)
+.+-+.|..|..+. ++ .++-.++..-..+..++.+|+..|..+.|+++. +.. ...++|..+...|+.++..
T Consensus 12 ~~~~~~~~~r~~~~--~~-~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~----~~~--~~~~~l~~~~~~~~~~~~~ 82 (421)
T 1ses_A 12 EVFHRAIREKGVAL--DL-EALLALDREVQELKKRLQEVQTERNQVAKRVPK----APP--EEKEALIARGKALGEEAKR 82 (421)
T ss_dssp HHHHHHHHHHTCCC--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SCH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcc--ccHHHHHHHHHHHHHHHHH
Confidence 44555555565332 22 345556666666777788888888888888764 111 2234555556666666666
Q ss_pred HHhhhhhhccc
Q 006838 558 VSSDQANLESK 568 (629)
Q Consensus 558 v~~~q~~mEnK 568 (629)
+.+++..++.+
T Consensus 83 ~~~~~~~~~~~ 93 (421)
T 1ses_A 83 LEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65555554443
No 178
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=27.92 E-value=6.1e+02 Score=28.32 Aligned_cols=82 Identities=13% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHH--------------hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH------
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQ--------------QDVFPELDREITRISLLLEKSKLELEELVKW------ 519 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry--------------~~~f~~l~~el~~~~~~Lek~~aeI~~L~e~------ 519 (629)
.+.+++|.+.+|..+..-+.-++.+...= .....+|...-..+...++.-+..|.+-++.
T Consensus 406 v~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~ 485 (863)
T 1sjj_A 406 IKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQ 485 (863)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777776665555555444321 1112222222222223333223333333222
Q ss_pred -HHHHhhhchhhhhHHHHHHHHH
Q 006838 520 -RETMERGLSDLESWKTVVSFRV 541 (629)
Q Consensus 520 -K~~~ek~~~~l~swks~VSsqL 541 (629)
..+..+++.++.+|-......|
T Consensus 486 l~~~f~~~a~~~~~Wl~~~e~~l 508 (863)
T 1sjj_A 486 LYLEYAKRAAPFNNWMEGAMEDL 508 (863)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 2367788888999977665444
No 179
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=27.90 E-value=2e+02 Score=24.59 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=33.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHH--H-HHHHHHhhhchhhhhHHHHHH
Q 006838 489 QDVFPELDREITRISLLLEKSKLELEEL--V-KWRETMERGLSDLESWKTVVS 538 (629)
Q Consensus 489 ~~~f~~l~~el~~~~~~Lek~~aeI~~L--~-e~K~~~ek~~~~l~swks~VS 538 (629)
...+.+++..+.....+|+.|..|++++ - ..|..+-.- ++.+|+.+.
T Consensus 33 k~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~k---lr~Yk~dl~ 82 (97)
T 3onj_A 33 NTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAK---LREWKKTIQ 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHHHHHH
Confidence 3567899999999999999999999999 2 234455433 355555443
No 180
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=27.68 E-value=1.1e+02 Score=23.47 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 006838 535 TVVSFRVNELIKENSMLRIDV 555 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~V 555 (629)
+.+..++.-|++||.+||.-+
T Consensus 20 aeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 20 SELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHh
Confidence 444556667899999999754
No 181
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.98 E-value=83 Score=23.19 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
..+..++++|..++..|-.+|+++++-
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456778899999999999999998864
No 182
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=26.84 E-value=5.6e+02 Score=28.28 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 533 WKTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
.|..|..|+ +-..+||..|+.++.+++-||.
T Consensus 123 IK~kVd~qi----~~IrvLq~~l~~q~skIQRLE~ 153 (491)
T 1m1j_A 123 LKQRVATQV----NRIKALQNSIQEQVVEMKRLEV 153 (491)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 355666555 3345677777777766666664
No 183
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=26.25 E-value=5.1e+02 Score=25.98 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006838 477 LEDYIKELNQRQQDVFPELDREITRIS 503 (629)
Q Consensus 477 le~YiEeln~ry~~~f~~l~~el~~~~ 503 (629)
|.-|.+++....+.-+.+|...++...
T Consensus 53 L~Py~~el~~~~~~~~eelr~kL~p~~ 79 (273)
T 3s84_A 53 LEPYADQLRTQVNTQAEQLRRQLTPYA 79 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444555555554444444444444433
No 184
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=25.76 E-value=4.1e+02 Score=24.79 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=9.0
Q ss_pred HhhhhhHHHHHHHHHHHHH
Q 006838 470 LEQNLSVLEDYIKELNQRQ 488 (629)
Q Consensus 470 LE~N~Slle~YiEeln~ry 488 (629)
|.-++.-+..|++++....
T Consensus 64 l~~~ld~l~~~~~~l~~~L 82 (165)
T 1gs9_A 64 MDETMKELKAYKSELEEQL 82 (165)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4444445555555544433
No 185
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=25.71 E-value=3.5e+02 Score=25.18 Aligned_cols=27 Identities=7% Similarity=0.368 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006838 477 LEDYIKELNQRQQDVFPELDREITRIS 503 (629)
Q Consensus 477 le~YiEeln~ry~~~f~~l~~el~~~~ 503 (629)
+.-|++++.++.+.-+.+|...+....
T Consensus 98 l~P~~~e~~~~~~~~~e~lr~~l~Py~ 124 (185)
T 3r2p_A 98 VQPYLDDFQKKWQEEMELYRQKVEPLR 124 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445555555555555555555554443
No 186
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=25.45 E-value=3.5e+02 Score=23.84 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=15.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhh
Q 006838 466 KVKSLEQNLSVLEDYIKELNQRQQDV 491 (629)
Q Consensus 466 KvksLE~N~Slle~YiEeln~ry~~~ 491 (629)
.|-......+-+++..++|...+-.+
T Consensus 16 qL~~~~q~~~e~e~~k~eL~~~~~~~ 41 (107)
T 2no2_A 16 QVSMARQAQVDLEREKKELEDSLERI 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666777777777766443
No 187
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.44 E-value=3.1e+02 Score=23.27 Aligned_cols=37 Identities=8% Similarity=0.250 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 006838 491 VFPELDREITRISLLLEKSKLELEELVKWRETMERGL 527 (629)
Q Consensus 491 ~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~ 527 (629)
.+..|+.|+.++-..+|...-+|..++++...+-.++
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777888888888888777888877665555555
No 188
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.32 E-value=1.5e+02 Score=24.73 Aligned_cols=16 Identities=13% Similarity=-0.072 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 006838 583 AIFKLVSARLSTLLRA 598 (629)
Q Consensus 583 a~~~l~~~~~~~~~~~ 598 (629)
-=+|+.+|+=...||-
T Consensus 60 lnvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 60 LNVKMALDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 3456677776666663
No 189
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=25.09 E-value=3.2e+02 Score=23.33 Aligned_cols=70 Identities=20% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 499 ITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 499 l~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
+..+-..+..++.+..+..++-+..+.++.+.+.=...+...+..|.|-+..|-.+++++.........+
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k 73 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 190
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.98 E-value=48 Score=27.75 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=32.6
Q ss_pred HHhhhhhHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006838 487 RQQDVFPELDR--EITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEK 557 (629)
Q Consensus 487 ry~~~f~~l~~--el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~ 557 (629)
...+.+|.+.. ..++ ...|.+...-|+.|++....+. .+.+.|.+++..|+.++++
T Consensus 22 ~Lr~~vP~~~~~~k~sk-~~iL~kA~~yI~~L~~~~~~l~--------------~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 22 KLKGLVPLGPDSSRHTT-LSLLTKAKLHIKKLEDSDRKAV--------------HQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHSSCCCSSSCCCTT-HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhh
Confidence 44455555421 2233 3556665566887766654444 3347777888888877754
No 191
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=24.51 E-value=99 Score=22.80 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 536 VVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 536 ~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
.+..++++|..+|..|-.+|+++++-.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 456778899999999999999988643
No 192
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=24.49 E-value=1.1e+02 Score=22.81 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 006838 536 VVSFRVNELIKENSMLRIDVEKVSSDQA 563 (629)
Q Consensus 536 ~VSsqLd~l~reN~~LR~~Ve~v~~~q~ 563 (629)
.+..++++|..+|..|-.+|+++++...
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4567788999999999999999987654
No 193
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=24.28 E-value=98 Score=23.06 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 006838 536 VVSFRVNELIKENSMLRIDVEKVSSDQ 562 (629)
Q Consensus 536 ~VSsqLd~l~reN~~LR~~Ve~v~~~q 562 (629)
.+..++++|..+|..|-.+|+++++..
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 456778889999999999999988754
No 194
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.16 E-value=69 Score=25.25 Aligned_cols=28 Identities=11% Similarity=0.219 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 006838 533 WKTVVSFRVNELIKENSMLRIDVEKVSS 560 (629)
Q Consensus 533 wks~VSsqLd~l~reN~~LR~~Ve~v~~ 560 (629)
+-..|...++.+.++|..|+.+++++.+
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355556666677777777777765543
No 195
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.00 E-value=1.3e+02 Score=24.90 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=17.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhh
Q 006838 540 RVNELIKENSMLRIDVEKVSSDQA 563 (629)
Q Consensus 540 qLd~l~reN~~LR~~Ve~v~~~q~ 563 (629)
..+.+..||..||..|..++.+..
T Consensus 44 ~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 44 LHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888888888876653
No 196
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=23.98 E-value=6.9e+02 Score=26.78 Aligned_cols=29 Identities=7% Similarity=0.122 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006838 457 DTVLRILMQKVKSLEQNLSVLEDYIKELN 485 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Slle~YiEeln 485 (629)
++|++-|...++..+.+..-...|+....
T Consensus 248 ~~V~~eL~~~~~~i~~~~~~~~~~l~~~~ 276 (413)
T 4hpq_C 248 AAINSLLQDAAIDVASFVRKVNMLLDERD 276 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677776666666666444444444443
No 197
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.80 E-value=3.5e+02 Score=23.29 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 006838 465 QKVKSLE 471 (629)
Q Consensus 465 qKvksLE 471 (629)
+||++|-
T Consensus 9 kKm~~lk 15 (101)
T 3u1c_A 9 KKMQMLK 15 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3343333
No 198
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.55 E-value=3.5e+02 Score=23.24 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 006838 493 PELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESK 568 (629)
Q Consensus 493 ~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK 568 (629)
..++.+|..+..-=.....+|..|..-+..++.++..++.=...+..+=+..-|+-+.++..+-.+.++..+++++
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q 82 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554445556666666667777776655554444444444445556666666666666666665554
No 199
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}
Probab=23.21 E-value=4.8e+02 Score=24.69 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=72.1
Q ss_pred cCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeecccccCCCCeEEEEeec-c----------CCCCCceeeE
Q 006838 242 ASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSL-S----------YPTEVWSPLG 310 (629)
Q Consensus 242 asnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS~-~----------YPt~~W~~LG 310 (629)
..++|.. ...|+-.=|.. +--+-|-+-..+.+..|.|.--+ =.++||.++++.-. . -|+.+|++-.
T Consensus 32 ~~~~l~~-~~~~leSD~De-QLli~IPFt~~VKl~Si~i~~~~-~~~~Pk~iKlf~N~~~~ldFd~a~~~~p~Q~~eL~~ 108 (171)
T 1wwy_A 32 FDNCLRK-DTTFLESDCDE-QLLITVAFNQPVKLYSMKFQGPD-NGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTE 108 (171)
T ss_dssp SSTTSSS-SSCCBCCSSCS-CCEEEEEEEEEEEEEEEEECCCS-SSCCBCEEEEEESCSSCCCTTHHHHSCCSSCEECCT
T ss_pred HHHhhcc-CCCcCcCCCCc-eEEEEeecCCcEEEEEEEEECCC-CCCCCcEEEEeecCCCCcChhhhccCCCceEEEcCC
Confidence 4445542 23466666654 34667788999999999887643 23689999999763 1 2455554321
Q ss_pred EEEeeccccceeeeCCCCce--EEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838 311 KFVATNVKQLQSFKLPEPKW--VRYLKLNLLSHYGSEFYCTLSVVEVYGVD 359 (629)
Q Consensus 311 ~F~a~N~R~~Q~F~L~~~~w--~RYLKle~LSHyGsE~YC~LS~vrVyG~t 359 (629)
+..+..+.++|+-.+| +.-|-|=|-+++|.+..+-|+.|.++|..
T Consensus 109 ----~~~~~g~~~~Lr~vkFqnV~sLtlf~~~n~~g~e~T~I~~I~l~Ge~ 155 (171)
T 1wwy_A 109 ----DDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTP 155 (171)
T ss_dssp ----TTSSTTCCEECCTTTCTTEEEEEEEECCBTTCCSSCCBCCEEEEEEE
T ss_pred ----cccCCCcEEEccceEEcccCEEEEEEecCCCCCccEEEEEEEEEeEe
Confidence 1112234566655443 66788888899976666779999999985
No 200
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.95 E-value=99 Score=24.48 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSD 561 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~ 561 (629)
+.++.|+++|..|..+||.+|....++
T Consensus 14 ~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 14 QTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777655443
No 201
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=22.91 E-value=99 Score=26.94 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=13.3
Q ss_pred HHHHhhhchhhhhHHHHHHHHH
Q 006838 520 RETMERGLSDLESWKTVVSFRV 541 (629)
Q Consensus 520 K~~~ek~~~~l~swks~VSsqL 541 (629)
++.++.|++|+.-+-..+..++
T Consensus 72 ~~~l~eELgDvL~~l~~LA~~l 93 (114)
T 2q5z_A 72 KGSVAEELYDVLYYVCALANIH 93 (114)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888765544444433
No 202
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=22.79 E-value=5.1e+02 Score=24.77 Aligned_cols=77 Identities=25% Similarity=0.375 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh--------------hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 006838 460 LRILMQKVKSLEQNLSVLEDYIKELNQRQQD--------------VFPELDREITRISLLLEKSKLELEELVKWRETMER 525 (629)
Q Consensus 460 lKiLmqKvksLE~N~Slle~YiEeln~ry~~--------------~f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek 525 (629)
.+.+++|-+.||..+.....-|+.++..-.. ....|......+...+..-+..|.+-.+.. ++..
T Consensus 38 v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~l~-~f~~ 116 (322)
T 1u4q_A 38 VNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLH-QFFR 116 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4677888888888877777777777664322 223344444444444444444454444433 4566
Q ss_pred hchhhhhHHHHH
Q 006838 526 GLSDLESWKTVV 537 (629)
Q Consensus 526 ~~~~l~swks~V 537 (629)
++.++..|-...
T Consensus 117 ~~~~~~~Wl~e~ 128 (322)
T 1u4q_A 117 DMDDEESWIKEK 128 (322)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677778886654
No 203
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.73 E-value=3.5e+02 Score=22.85 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 006838 538 SFRVNELIKENSMLRIDV 555 (629)
Q Consensus 538 SsqLd~l~reN~~LR~~V 555 (629)
..+++.+.++...|+.++
T Consensus 84 ~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 84 IDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 204
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=22.44 E-value=1.6e+02 Score=25.64 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 006838 535 TVVSFRVNELIKENSMLRIDVEKVSSDQANL 565 (629)
Q Consensus 535 s~VSsqLd~l~reN~~LR~~Ve~v~~~q~~m 565 (629)
..+..+++.|.+|+..+..++..+..+.+.|
T Consensus 58 ~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 58 TQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666666666666666666666555444
No 205
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=21.46 E-value=4.5e+02 Score=26.62 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=15.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhcccch
Q 006838 540 RVNELIKENSMLRIDVEKVSSDQANLESKEL 570 (629)
Q Consensus 540 qLd~l~reN~~LR~~Ve~v~~~q~~mEnK~l 570 (629)
+|-.+.++=..|-.++..|.++...+|-..+
T Consensus 199 RLA~lEqdEl~LE~eL~~V~~Rief~qEy~l 229 (242)
T 3uux_B 199 KIANIEQNQLLLEDNLKQIDDRLDFLEEYGL 229 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Confidence 3444445555555556556655555554443
No 206
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=21.45 E-value=3.7e+02 Score=22.71 Aligned_cols=36 Identities=8% Similarity=0.096 Sum_probs=17.1
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHH
Q 006838 542 NELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLF 578 (629)
Q Consensus 542 d~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~ 578 (629)
++|...-...+..-.++++. -+.+|..+.+++.+++
T Consensus 43 ~~L~~~s~~F~~~A~~l~rk-mwwkn~K~~iii~~iv 78 (91)
T 3hd7_A 43 DALQAGASQFETSAAKLKRK-YWWKNLKMMIILGVIC 78 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44444444455555555543 3555555544443333
No 207
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.35 E-value=98 Score=25.48 Aligned_cols=54 Identities=20% Similarity=0.388 Sum_probs=29.6
Q ss_pred hhhhhHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006838 489 QDVFPELDR-EITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEK 557 (629)
Q Consensus 489 ~~~f~~l~~-el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~ 557 (629)
+..+|.+.. .+++.++ |.....-|+.|++....++ .++++|.++|..|+.++..
T Consensus 25 r~lvP~~~~~k~sK~~i-L~~Ai~YI~~L~~~~~~l~--------------~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 25 RDSVPSLQGEKASRAQI-LDKATEYIQYMRRKNHTHQ--------------QDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HTTSGGGTTSCCCHHHH-HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 444555421 3444443 4444356777766554443 3556777777777777643
No 208
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=20.97 E-value=3.5e+02 Score=27.65 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHhhhhhH
Q 006838 457 DTVLRILMQKVKSLEQNLSV 476 (629)
Q Consensus 457 dSVlKiLmqKvksLE~N~Sl 476 (629)
+.+...+..|-+.|+..+..
T Consensus 221 ~~L~~~~~~R~~~L~~~~~~ 240 (476)
T 1hci_A 221 DRLGTLTQKRREALERMEKL 240 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777666544
No 209
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.91 E-value=4e+02 Score=22.92 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHH---hHHHHHHHHHHHHHHhhhch
Q 006838 496 DREITRISLLLEK---SKLELEELVKWRETMERGLS 528 (629)
Q Consensus 496 ~~el~~~~~~Lek---~~aeI~~L~e~K~~~ek~~~ 528 (629)
+..+..+..+++. +|-.+.+|..-|-++++.+.
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLK 50 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLK 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333433344443 45556777677777776663
No 210
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.68 E-value=3.9e+02 Score=22.71 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q 006838 531 ESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLE 566 (629)
Q Consensus 531 ~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mE 566 (629)
.+=++.+..-++.|.+|-+.|...++.++.+-+.|+
T Consensus 38 ~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 38 KKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666677778888888888888877766654
No 211
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.67 E-value=1.5e+02 Score=23.60 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=19.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006838 527 LSDLESWKTVVSFRVNELIKENSMLRIDVEK 557 (629)
Q Consensus 527 ~~~l~swks~VSsqLd~l~reN~~LR~~Ve~ 557 (629)
+.+++.=...+..+++.|.+|+..|+.-+..
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455667778888888888776643
No 212
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=20.55 E-value=3.6e+02 Score=26.37 Aligned_cols=63 Identities=10% Similarity=0.167 Sum_probs=40.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcc
Q 006838 500 TRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLES 567 (629)
Q Consensus 500 ~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEn 567 (629)
.+..++++-++..|..|.+.|+.+..|+.....+...|...+.++-+-| +.++.+.=+.+++.
T Consensus 15 ~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~-----E~eKy~~FigDLek 77 (190)
T 3thf_A 15 QKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPS-----EASKFRTHVDAVGN 77 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHH-----HHHHHHHHHHHHHH
Confidence 3556677777777888888888888777777666666666665555443 45555544444443
No 213
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=20.34 E-value=5.6e+02 Score=26.95 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhhchhh
Q 006838 515 ELVKWRETMERGLSDL 530 (629)
Q Consensus 515 ~L~e~K~~~ek~~~~l 530 (629)
+|+++|+++-++|+++
T Consensus 133 dLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 133 DLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhh
Confidence 5666666666666544
No 214
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=20.25 E-value=4.8e+02 Score=23.83 Aligned_cols=78 Identities=9% Similarity=0.138 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 006838 492 FPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKE 569 (629)
Q Consensus 492 f~~l~~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~ 569 (629)
++++=.+...+...|++++..|..|......+-....+..+-+..+..-.++..+--..++..++.+.......+.+.
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~ 115 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSN 115 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
No 215
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.20 E-value=1.1e+02 Score=32.47 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhchhh
Q 006838 497 REITRISLLLEKSKLELEELVKWRETMERGLSDL 530 (629)
Q Consensus 497 ~el~~~~~~Lek~~aeI~~L~e~K~~~ek~~~~l 530 (629)
.++-.++..-.++..++.+|+..|..+.|+++.+
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 63 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKL 63 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666667777777777777777777653
No 216
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=20.13 E-value=6.4e+02 Score=26.14 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=28.3
Q ss_pred CchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhHHHH
Q 006838 455 PGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDV---FPELDREITRISLLLEKSKLEL 513 (629)
Q Consensus 455 ~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~---f~~l~~el~~~~~~Lek~~aeI 513 (629)
++.|++-.|.+-+ +.+..-+....+||..--.++ +..+..++.++..-|++++.++
T Consensus 256 ~k~TLLh~l~~~v---~~~~p~l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l 314 (411)
T 1ux5_A 256 NSMTFLNYVEKIV---RLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSV 314 (411)
T ss_dssp SCSBHHHHHHHHH---HHHCGGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHH---HHhCcccccccchhhhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777776543 333333334455554433322 4555555555555555554443
No 217
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=20.04 E-value=2e+02 Score=23.86 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=34.0
Q ss_pred HHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccch
Q 006838 521 ETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKEL 570 (629)
Q Consensus 521 ~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~l 570 (629)
+.+++|+.|+++=.....+++.+..|--..|.-+|-+|--.|+-...-++
T Consensus 13 d~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLkvlv~QE~~rK~G~ 62 (65)
T 3t97_B 13 DIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGY 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 44555555555555666778888888888888899888877765554444
Done!