Query 006839
Match_columns 629
No_of_seqs 580 out of 3569
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 15:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02125 PA_VSR PA_VSR: Proteas 99.9 4.9E-27 1.1E-31 210.2 14.3 127 54-181 1-127 (127)
2 cd02123 PA_C_RZF_like PA_C-RZF 99.9 4E-22 8.6E-27 184.9 14.4 121 46-176 22-142 (153)
3 cd02126 PA_EDEM3_like PA_EDEM3 99.9 3.3E-22 7.1E-27 179.6 13.3 118 50-181 2-126 (126)
4 cd02127 PA_hPAP21_like PA_hPAP 99.9 6.8E-22 1.5E-26 174.7 13.6 114 54-182 1-117 (118)
5 cd02122 PA_GRAIL_like PA _GRAI 99.9 9.7E-22 2.1E-26 178.5 14.0 115 51-181 18-138 (138)
6 cd02132 PA_GO-like PA_GO-like: 99.9 3.4E-21 7.3E-26 176.1 13.8 121 45-181 16-139 (139)
7 KOG1214 Nidogen and related ba 99.8 7.4E-20 1.6E-24 196.9 11.8 189 352-562 666-866 (1289)
8 cd02129 PA_hSPPL_like PA_hSPPL 99.8 2.1E-19 4.5E-24 157.6 11.5 89 72-174 27-115 (120)
9 cd04813 PA_1 PA_1: Protease-as 99.8 2.1E-19 4.6E-24 158.4 11.6 105 51-173 6-111 (117)
10 cd04816 PA_SaNapH_like PA_SaNa 99.8 2.1E-18 4.6E-23 154.5 13.8 116 53-181 6-122 (122)
11 cd02130 PA_ScAPY_like PA_ScAPY 99.7 1.5E-17 3.3E-22 149.0 13.0 102 62-181 20-122 (122)
12 cd04818 PA_subtilisin_1 PA_sub 99.7 3.9E-17 8.4E-22 145.6 13.4 113 52-181 2-118 (118)
13 KOG3920 Uncharacterized conser 99.7 2.2E-17 4.8E-22 145.5 5.8 135 34-183 33-173 (193)
14 cd04817 PA_VapT_like PA_VapT_l 99.7 3.3E-16 7.1E-21 141.5 12.7 104 55-177 27-137 (139)
15 cd02124 PA_PoS1_like PA_PoS1_l 99.7 4.7E-16 1E-20 139.8 12.3 92 72-181 38-129 (129)
16 KOG4628 Predicted E3 ubiquitin 99.7 6.4E-16 1.4E-20 157.5 13.1 115 47-174 35-150 (348)
17 KOG2442 Uncharacterized conser 99.5 2.6E-14 5.7E-19 148.0 10.3 174 48-243 55-249 (541)
18 KOG1219 Uncharacterized conser 99.5 2.6E-14 5.5E-19 166.3 8.7 109 419-560 3865-3977(4289)
19 cd00538 PA PA: Protease-associ 99.5 1.3E-13 2.9E-18 124.2 10.6 98 72-181 27-126 (126)
20 PF02225 PA: PA domain; Inter 99.5 2.8E-14 6.1E-19 123.4 5.7 68 96-171 34-101 (101)
21 cd02133 PA_C5a_like PA_C5a_lik 99.4 3.3E-12 7.2E-17 117.8 12.7 100 53-173 15-114 (143)
22 cd04819 PA_2 PA_2: Protease-as 99.4 6.7E-12 1.5E-16 113.1 12.4 105 61-180 20-126 (127)
23 cd04815 PA_M28_2 PA_M28_2: Pro 99.3 1.1E-11 2.4E-16 112.7 8.4 109 55-181 8-134 (134)
24 cd02120 PA_subtilisin_like PA_ 99.1 3.6E-10 7.7E-15 102.0 10.0 85 74-176 36-121 (126)
25 cd02128 PA_TfR PA_TfR: Proteas 99.0 1.4E-09 2.9E-14 102.7 10.3 117 52-174 17-156 (183)
26 KOG1214 Nidogen and related ba 98.9 4.8E-09 1E-13 114.6 10.3 116 382-517 743-864 (1289)
27 PF07645 EGF_CA: Calcium-bindi 98.7 1.4E-08 2.9E-13 72.6 3.3 41 518-559 1-42 (42)
28 KOG1219 Uncharacterized conser 98.6 4.6E-08 1E-12 115.8 6.3 92 393-512 3883-3975(4289)
29 KOG4289 Cadherin EGF LAG seven 98.6 3.8E-08 8.1E-13 112.6 5.4 105 442-571 1218-1327(2531)
30 cd02121 PA_GCPII_like PA_GCPII 98.5 4.5E-07 9.7E-12 88.7 10.0 120 62-199 43-207 (220)
31 cd04822 PA_M28_1_3 PA_M28_1_3: 98.4 1.8E-06 3.8E-11 79.5 11.0 96 62-172 18-133 (151)
32 KOG4289 Cadherin EGF LAG seven 98.4 2.6E-07 5.7E-12 106.0 6.5 103 377-507 1203-1308(2531)
33 cd04814 PA_M28_1 PA_M28_1: Pro 98.3 1.7E-06 3.6E-11 78.7 8.0 71 51-130 10-100 (142)
34 PF07645 EGF_CA: Calcium-bindi 98.3 5.5E-07 1.2E-11 64.3 3.4 39 417-462 1-39 (42)
35 cd04820 PA_M28_1_1 PA_M28_1_1: 98.2 4.6E-06 1E-10 75.4 7.8 64 61-130 19-96 (137)
36 KOG1217 Fibrillins and related 98.1 1.9E-05 4E-10 87.3 10.6 149 392-555 148-306 (487)
37 cd02131 PA_hNAALADL2_like PA_h 98.0 1.1E-05 2.5E-10 73.1 6.9 103 60-172 11-138 (153)
38 KOG4260 Uncharacterized conser 98.0 7.2E-06 1.6E-10 79.8 5.0 57 494-552 211-269 (350)
39 KOG1217 Fibrillins and related 98.0 3.1E-05 6.6E-10 85.6 10.5 149 387-563 243-401 (487)
40 PF06247 Plasmod_Pvs28: Plasmo 98.0 4.2E-06 9.1E-11 77.6 2.9 138 394-560 18-169 (197)
41 KOG4260 Uncharacterized conser 97.9 7.9E-06 1.7E-10 79.5 4.4 88 443-551 214-304 (350)
42 PF14670 FXa_inhibition: Coagu 97.9 6.3E-06 1.4E-10 56.2 2.4 31 526-559 6-36 (36)
43 PF14670 FXa_inhibition: Coagu 97.8 1.3E-05 2.8E-10 54.7 2.5 36 421-466 1-36 (36)
44 PF12947 EGF_3: EGF domain; I 97.7 2.3E-05 5E-10 53.6 2.1 35 522-559 1-36 (36)
45 smart00179 EGF_CA Calcium-bind 97.6 6.1E-05 1.3E-09 52.4 3.9 38 518-559 1-38 (39)
46 PF12662 cEGF: Complement Clr- 97.5 7.2E-05 1.6E-09 45.9 2.2 23 499-521 1-24 (24)
47 PF12947 EGF_3: EGF domain; I 97.3 0.00016 3.4E-09 49.5 2.6 36 421-466 1-36 (36)
48 PF12662 cEGF: Complement Clr- 97.3 0.00016 3.4E-09 44.4 1.7 22 445-469 1-22 (24)
49 PF02128 Peptidase_M36: Fungal 97.3 5E-05 1.1E-09 79.3 -0.9 126 225-365 217-356 (378)
50 cd00054 EGF_CA Calcium-binding 96.9 0.0013 2.8E-08 45.0 3.7 33 518-551 1-33 (38)
51 cd01475 vWA_Matrilin VWA_Matri 96.7 0.0013 2.8E-08 65.5 3.6 40 515-557 183-223 (224)
52 smart00179 EGF_CA Calcium-bind 96.6 0.0021 4.6E-08 44.5 3.1 33 417-457 1-33 (39)
53 PF00008 EGF: EGF-like domain 96.6 0.0013 2.9E-08 43.7 1.8 29 522-552 1-30 (32)
54 smart00181 EGF Epidermal growt 95.9 0.011 2.4E-07 39.9 3.5 30 522-553 2-31 (35)
55 cd00053 EGF Epidermal growth f 95.7 0.014 3E-07 39.1 3.6 26 527-553 7-32 (36)
56 cd01475 vWA_Matrilin VWA_Matri 95.5 0.009 1.9E-07 59.4 2.8 43 409-462 180-222 (224)
57 PHA03099 epidermal growth fact 95.1 0.034 7.3E-07 48.6 4.5 39 518-562 41-83 (139)
58 KOG1225 Teneurin-1 and related 94.8 0.072 1.6E-06 58.7 7.2 98 397-552 266-363 (525)
59 PF06247 Plasmod_Pvs28: Plasmo 94.5 0.026 5.7E-07 52.8 2.7 97 437-551 11-119 (197)
60 cd00054 EGF_CA Calcium-binding 94.5 0.039 8.4E-07 37.5 3.0 33 417-457 1-33 (38)
61 PF00008 EGF: EGF-like domain 94.5 0.029 6.2E-07 37.3 2.1 20 435-456 8-28 (32)
62 KOG1225 Teneurin-1 and related 94.3 0.14 3.1E-06 56.4 8.2 79 437-553 260-338 (525)
63 cd04821 PA_M28_1_2 PA_M28_1_2: 94.3 0.064 1.4E-06 49.9 4.8 35 96-130 50-103 (157)
64 KOG0994 Extracellular matrix g 93.0 0.15 3.3E-06 59.4 5.8 59 499-561 840-908 (1758)
65 cd00053 EGF Epidermal growth f 92.7 0.16 3.6E-06 33.7 3.6 20 492-511 12-32 (36)
66 PF12946 EGF_MSP1_1: MSP1 EGF 92.0 0.086 1.9E-06 35.9 1.4 30 522-553 2-32 (37)
67 KOG2195 Transferrin receptor a 91.1 0.31 6.8E-06 55.9 5.5 35 95-129 184-218 (702)
68 smart00181 EGF Epidermal growt 88.4 0.4 8.7E-06 32.0 2.3 28 421-457 2-29 (35)
69 KOG1226 Integrin beta subunit 88.4 1.9 4.1E-05 49.1 8.7 24 500-524 566-590 (783)
70 PF12955 DUF3844: Domain of un 86.5 0.67 1.4E-05 39.6 3.0 45 519-564 5-64 (103)
71 PF12661 hEGF: Human growth fa 86.0 0.36 7.8E-06 25.1 0.7 12 501-512 1-12 (13)
72 KOG0994 Extracellular matrix g 84.9 1.8 3.9E-05 51.1 6.3 94 401-512 847-946 (1758)
73 PF07974 EGF_2: EGF-like domai 79.2 2.8 6E-05 27.8 3.1 22 527-551 7-28 (32)
74 PF12946 EGF_MSP1_1: MSP1 EGF 77.1 2 4.3E-05 29.4 2.0 25 435-461 9-34 (37)
75 PF09064 Tme5_EGF_like: Thromb 71.0 3.7 8E-05 27.4 2.0 24 527-554 7-30 (34)
76 PF07974 EGF_2: EGF-like domai 66.9 9.5 0.00021 25.3 3.4 20 492-512 12-31 (32)
77 PF09064 Tme5_EGF_like: Thromb 65.3 6.1 0.00013 26.4 2.2 20 494-513 12-31 (34)
78 PF01683 EB: EB module; Inter 63.0 12 0.00025 27.6 3.7 26 522-552 22-47 (52)
79 PHA02887 EGF-like protein; Pro 62.7 6.8 0.00015 34.0 2.6 25 492-519 97-124 (126)
80 PTZ00382 Variant-specific surf 62.4 5.7 0.00012 33.7 2.2 15 545-561 41-55 (96)
81 KOG1226 Integrin beta subunit 61.9 52 0.0011 38.0 10.1 13 161-173 153-165 (783)
82 PF07172 GRP: Glycine rich pro 61.0 5.4 0.00012 33.8 1.8 26 1-28 1-26 (95)
83 PF00954 S_locus_glycop: S-loc 61.0 7.5 0.00016 33.7 2.7 33 518-552 76-108 (110)
84 PF12191 stn_TNFRSF12A: Tumour 56.9 3.1 6.8E-05 36.6 -0.3 11 534-544 54-64 (129)
85 PHA03099 epidermal growth fact 54.9 9.1 0.0002 33.8 2.1 21 492-512 56-79 (139)
86 KOG1215 Low-density lipoprotei 50.7 19 0.0004 43.5 4.7 59 494-556 339-400 (877)
87 PF05984 Cytomega_UL20A: Cytom 48.8 19 0.00042 29.1 2.9 35 6-42 2-36 (100)
88 PF12273 RCR: Chitin synthesis 48.8 6.4 0.00014 35.4 0.3 27 571-597 2-28 (130)
89 KOG3516 Neurexin IV [Signal tr 48.4 15 0.00031 44.2 3.1 43 515-563 541-584 (1306)
90 PHA02887 EGF-like protein; Pro 45.4 19 0.00041 31.3 2.6 37 519-561 83-123 (126)
91 PTZ00214 high cysteine membran 45.3 8.8 0.00019 45.3 0.8 22 541-564 750-771 (800)
92 KOG1215 Low-density lipoprotei 44.3 50 0.0011 39.9 7.0 72 417-511 324-397 (877)
93 cd03023 DsbA_Com1_like DsbA fa 43.9 43 0.00093 30.1 5.1 77 304-391 68-144 (154)
94 KOG1025 Epidermal growth facto 42.6 3E+02 0.0066 32.8 12.1 20 493-512 557-579 (1177)
95 COG5540 RING-finger-containing 42.4 7.1 0.00015 39.6 -0.5 35 98-132 149-183 (374)
96 cd04727 pdxS PdxS is a subunit 39.9 43 0.00094 34.2 4.6 66 107-175 16-88 (283)
97 COG4736 CcoQ Cbb3-type cytochr 39.7 22 0.00049 27.3 2.0 44 573-620 11-54 (60)
98 PF00954 S_locus_glycop: S-loc 39.0 29 0.00064 30.0 3.0 32 472-511 78-109 (110)
99 KOG1836 Extracellular matrix g 38.6 36 0.00078 43.5 4.6 54 494-551 749-807 (1705)
100 TIGR01477 RIFIN variant surfac 38.0 24 0.00052 37.1 2.5 30 577-606 318-347 (353)
101 PTZ00046 rifin; Provisional 37.8 24 0.00052 37.2 2.5 28 578-605 324-351 (358)
102 KOG4291 Mucin/alpha-tectorin [ 37.6 62 0.0013 39.4 6.2 117 410-551 416-532 (1043)
103 cd03029 GRX_hybridPRX5 Glutare 37.5 79 0.0017 24.6 5.1 57 97-162 2-59 (72)
104 PF02009 Rifin_STEVOR: Rifin/s 37.4 29 0.00062 36.0 3.0 30 575-604 262-291 (299)
105 PRK01844 hypothetical protein; 34.5 50 0.0011 26.3 3.2 16 586-601 19-34 (72)
106 COG4882 Predicted aminopeptida 32.2 2.6E+02 0.0057 29.7 8.8 95 96-203 90-186 (486)
107 PF05545 FixQ: Cbb3-type cytoc 31.2 52 0.0011 24.0 2.7 21 581-601 19-39 (49)
108 TIGR00343 pyridoxal 5'-phospha 30.7 41 0.00089 34.4 2.8 54 107-163 18-77 (287)
109 PF04478 Mid2: Mid2 like cell 29.1 12 0.00025 34.5 -1.3 32 572-603 55-86 (154)
110 KOG3514 Neurexin III-alpha [Si 28.5 38 0.00083 40.3 2.4 36 521-562 625-661 (1591)
111 KOG3512 Netrin, axonal chemotr 28.2 3.8E+02 0.0082 29.5 9.4 25 379-403 277-302 (592)
112 smart00051 DSL delta serrate l 27.9 99 0.0021 24.0 3.9 44 499-551 16-59 (63)
113 cd03028 GRX_PICOT_like Glutare 26.6 1.4E+02 0.003 24.6 5.0 71 96-174 8-87 (90)
114 KOG4258 Insulin/growth factor 25.0 51 0.0011 38.6 2.5 53 500-555 262-319 (1025)
115 PF01680 SOR_SNZ: SOR/SNZ fami 24.9 23 0.0005 33.4 -0.1 63 107-172 22-93 (208)
116 KOG0196 Tyrosine kinase, EPH ( 24.6 68 0.0015 37.4 3.4 49 501-550 260-316 (996)
117 PF15176 LRR19-TM: Leucine-ric 23.4 77 0.0017 27.0 2.6 33 568-600 14-47 (102)
118 PRK00523 hypothetical protein; 23.1 1.3E+02 0.0027 24.1 3.6 16 586-601 20-35 (72)
119 PF01826 TIL: Trypsin Inhibito 21.7 66 0.0014 23.8 1.9 24 499-522 32-55 (55)
120 PF15240 Pro-rich: Proline-ric 20.9 48 0.0011 31.4 1.1 14 11-24 2-15 (179)
No 1
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.95 E-value=4.9e-27 Score=210.19 Aligned_cols=127 Identities=65% Similarity=1.100 Sum_probs=106.2
Q ss_pred CcCCCCCCCCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCCCCc
Q 006839 54 NFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEAL 133 (629)
Q Consensus 54 ~Fg~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~~~~ 133 (629)
+||.++||+++.|.|++|+++.+||+++.....+.+.++...++||||+||+|+|.+|++|||++||+||||||+.++++
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 80 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL 80 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 69999999999999999988999999997632122222345589999999999999999999999999999999998878
Q ss_pred eecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCeEEEEE
Q 006839 134 ITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (629)
Q Consensus 134 ~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~ 181 (629)
+.|..+.++. +.++..+|+||++||++++|+.|+++|++|..|+|+|
T Consensus 81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 8886554321 1134567899999999999999999999999998875
No 2
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.88 E-value=4e-22 Score=184.93 Aligned_cols=121 Identities=33% Similarity=0.469 Sum_probs=101.0
Q ss_pred ccccccccCcCCCCCCCCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEE
Q 006839 46 GSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLV 125 (629)
Q Consensus 46 ~~~~~~~a~Fg~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII 125 (629)
..+++.+|.||.+++++.+.|.|++ ++|.+||++++++. + ......++|+||+||+|+|.+|++|||++||+||||
T Consensus 22 ~~~~~~~A~FG~~~~~~~~~g~lv~-~~p~~gC~~~~~~~--~-~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII 97 (153)
T cd02123 22 DEFDDLPANFGPIPPGSGLKGVLVV-AEPLNACSPIENPP--L-NSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIV 97 (153)
T ss_pred ceEeeecccCCCCCCCCceEEEEEe-CCccccCCCCcccc--c-ccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEE
Confidence 3588899999999999999999887 67889999987632 0 012223899999999999999999999999999999
Q ss_pred EECCCCCceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCe
Q 006839 126 ADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEM 176 (629)
Q Consensus 126 ~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~ 176 (629)
||+.++.+..|...+.+ +.+++||+++|++++|+.|+++++.+..
T Consensus 98 ~n~~~~~~~~m~~~~~~------~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 98 YNDESNDLISMSGNDQE------IKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred EECCCCcceeccCCCCC------CcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 99988777777644321 2478999999999999999999998876
No 3
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.88 E-value=3.3e-22 Score=179.58 Aligned_cols=118 Identities=27% Similarity=0.441 Sum_probs=95.7
Q ss_pred ccccCcCCCCCCC-CceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEEC
Q 006839 50 SAIGNFGIPQYGG-SMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADD 128 (629)
Q Consensus 50 ~~~a~Fg~~~~~~-~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~ 128 (629)
..+|.||.+.+.. .+.|.|+. ++|.+||+++.++. +++ ++|+||+||+|+|.+|+++||+|||+|||||||
T Consensus 2 ~~pa~FG~~~~~~~~~~g~l~~-~~p~~gC~~~~~~~-~~~------gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~ 73 (126)
T cd02126 2 AGPAQFGMDLTGDKAGVGRVVK-AKPYRACSEITNAE-EVK------GKIAIMERGDCMFVEKARRVQKAGAIGGIVIDN 73 (126)
T ss_pred CCCcccCCcCCCCCCceEEEEe-CCchhcccCCCCcc-ccC------ceEEEEECCCCcHHHHHHHHHHCCCcEEEEEEC
Confidence 3578999888864 68999887 56789999987632 344 899999999999999999999999999999998
Q ss_pred CCCC------ceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCeEEEEE
Q 006839 129 IEEA------LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (629)
Q Consensus 129 ~~~~------~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~ 181 (629)
.+++ ++.|..... ..+.++||+++|++.||+.|+++|+++.+|++.|
T Consensus 74 ~~~~~~~~~~~~~m~~~~~------~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 74 NEGSSSDTAPMFAMSGDGD------STDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred CCCccccccceeEeecCCC------CCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 7653 445532211 1236899999999999999999999998888764
No 4
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.88 E-value=6.8e-22 Score=174.68 Aligned_cols=114 Identities=25% Similarity=0.340 Sum_probs=93.4
Q ss_pred CcCCCCCCCCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCCC--
Q 006839 54 NFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEE-- 131 (629)
Q Consensus 54 ~Fg~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~~-- 131 (629)
.||.+..+..+.|.|+. ++|.+||++..++ .+++ ++|+||+||+|+|.+|+++||++||+||||||+..+
T Consensus 1 ~~~~~~~~~~~~~~lv~-~~p~~gC~~~~~~-~~~~------g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 72 (118)
T cd02127 1 DFGTIFNTRYKHVPLVP-ADPLEACEELRNI-HDIN------GNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSD 72 (118)
T ss_pred CCCccccccccceEEEE-CCccccCCCCCCc-cccC------CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 48888888888888876 6788999987653 2443 899999999999999999999999999999998754
Q ss_pred -CceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCeEEEEEE
Q 006839 132 -ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLD 182 (629)
Q Consensus 132 -~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~~ 182 (629)
..+.|... +....++||+++|++++|+.|++.+++|..|++.+.
T Consensus 73 ~~~~~m~~~-------~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 73 EYYVEMIQD-------DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred ccceEecCC-------CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEeee
Confidence 23556432 113468999999999999999999999998877654
No 5
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.87 E-value=9.7e-22 Score=178.46 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=95.5
Q ss_pred cccCcCCCCCCCCceeeEec--cCCCcCCCCCCCC--CCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEE
Q 006839 51 AIGNFGIPQYGGSMAGAVTY--PKENRKGCREFGD--FGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVA 126 (629)
Q Consensus 51 ~~a~Fg~~~~~~~~~g~l~~--~~~~~~gC~~~~~--~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~ 126 (629)
.+|.||...+...+.|.|++ ++.+.+||+++++ ...++ .++||||+||+|+|.+|++|||++||++||||
T Consensus 18 ~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~~~~~~~------~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIy 91 (138)
T cd02122 18 ESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRFPIPPNG------EPWIALIQRGNCTFEEKIKLAAERNASAVVIY 91 (138)
T ss_pred cccccCCCCCCCccEEEEecCCCCCCcCCCCCCccccCCccC------CCeEEEEECCCCCHHHHHHHHHHCCCcEEEEE
Confidence 47899999999999999764 4567899999876 22223 38999999999999999999999999999999
Q ss_pred ECCC--CCceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCeEEEEE
Q 006839 127 DDIE--EALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (629)
Q Consensus 127 n~~~--~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~ 181 (629)
|+.+ +.++.|.... ...||+++|++.+|+.|++++++|.+|++++
T Consensus 92 n~~~~~~~~~~m~~~~----------~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 92 NNPGTGNETVKMSHPG----------TGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred ECCCCCCceeeccCCC----------CCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 9986 2356664321 2479999999999999999999999888764
No 6
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.86 E-value=3.4e-21 Score=176.06 Aligned_cols=121 Identities=29% Similarity=0.406 Sum_probs=97.9
Q ss_pred cccccccccCcCCCCCC---CCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCc
Q 006839 45 KGSHDSAIGNFGIPQYG---GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGAS 121 (629)
Q Consensus 45 ~~~~~~~~a~Fg~~~~~---~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~ 121 (629)
...|...+|.||..++. ..+.+.++. +++.+||+++++ +++ ++|+||+||+|+|.+|++|||++||+
T Consensus 16 ~~~~~~~~a~FG~~~p~~~~~~~~~~lv~-~~~~~gC~~~~~---~~~------g~IvLV~RG~C~F~~K~~nA~~aGA~ 85 (139)
T cd02132 16 GDELVGVTARFGASLPSKEDNANKTRAVL-ANPLDCCSPSTS---KLS------GSIALVERGECAFTEKAKIAEAGGAS 85 (139)
T ss_pred ccEEEeeccccCCCCCCcccCccEEEEEE-CCcccccCCCCc---ccC------CeEEEEECCCCCHHHHHHHHHHcCCc
Confidence 34688999999987654 347788776 577899999864 444 89999999999999999999999999
Q ss_pred EEEEEECCCCCceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCeEEEEE
Q 006839 122 AVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (629)
Q Consensus 122 avII~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~ 181 (629)
+|||||+.++ ++.|....+ .....++||+++|++.+|+.|+++|++|..|++++
T Consensus 86 avIv~n~~~~-~~~~~~~~~-----~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 86 ALLIINDQEE-LYKMVCEDN-----DTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred EEEEEECCCc-ccccccCCC-----CCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 9999998754 455543222 11236799999999999999999999999888763
No 7
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.81 E-value=7.4e-20 Score=196.94 Aligned_cols=189 Identities=24% Similarity=0.528 Sum_probs=148.9
Q ss_pred CCCChhhHHHHHhhcCCCCCCcc--eecCeeE---ecCeeeecccc-CCceeeeccCCCccCCCCccccCCCcccccCCC
Q 006839 352 DADNPVLKEEQDAQVGKGSRGDV--TILPTLV---VNNRQYRGKLE-KGAVLKAICSGFEETTEPAVCLSGETNECLDNN 425 (629)
Q Consensus 352 d~~n~iL~~~~~~q~~~~~~~~v--~~~P~v~---in~~~~~c~~~-~~~~~c~cc~Gf~~~~~~~~C~~~d~deC~~~~ 425 (629)
+.+..+|..+..++++.+.+..- ...|... ..+...+|... ...|.|+|-.||. ++++.|. |++||+..+
T Consensus 666 n~ee~~lr~a~Sn~igpV~E~S~~~~~npCy~gsh~cdt~a~C~pg~~~~~tcecs~g~~--gdgr~c~--d~~eca~~~ 741 (1289)
T KOG1214|consen 666 NDEERVLRFAVSNQIGPVKEDSDPTPVNPCYDGSHMCDTTARCHPGTGVDYTCECSSGYQ--GDGRNCV--DENECATGF 741 (1289)
T ss_pred CccccchhhhhhhcccceecCCCCcccccceecCcccCCCccccCCCCcceEEEEeeccC--CCCCCCC--ChhhhccCC
Confidence 56788999999999987543221 1111111 01112223222 3468999999997 6999999 999999999
Q ss_pred CCCCCCcCCCccccccCCCceeeeeCCCCCeeEeCCCccccccCC----CCcccCCCCCCCCCCCCCCccceeeeCC--C
Q 006839 426 GGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSG----PGKCKINNGGCWHESKDGHTYSACLDSE--N 499 (629)
Q Consensus 426 ~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~~~~dg~~~C~~~~----~~~C~~~~~~C~~~~~~~~~~~~C~~~~--~ 499 (629)
+.|. +++.|+|.+|+|+|+|.. ||.|.+|+ .+|..+. ++.|....+.|.-. .+++|+.+. .
T Consensus 742 ~~CG-----p~s~Cin~pg~~rceC~~--gy~F~dd~-~tCV~i~~pap~n~Ce~g~h~C~i~-----g~a~c~~hGgs~ 808 (1289)
T KOG1214|consen 742 HRCG-----PNSVCINLPGSYRCECRS--GYEFADDR-HTCVLITPPAPANPCEDGSHTCAIA-----GQARCVHHGGST 808 (1289)
T ss_pred CCCC-----CCceeecCCCceeEEEee--cceeccCC-cceEEecCCCCCCccccCccccCcC-----CceEEEecCCce
Confidence 8998 669999999999999999 99999999 8898652 36677666667543 346777777 8
Q ss_pred ceeeCCCCcccCCccCCCCCCCCCCCCCCCCCCCceeeCCCceeEecCCCCcccCCCCccccc
Q 006839 500 GKCQCPPGFKGDGVKSCVDIDECKERKACQCSECSCKDTWGSYECTCSGDLLYIRDHDTCISK 562 (629)
Q Consensus 500 ~~C~C~~Gf~g~~~~~C~dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~~g~~C~~~ 562 (629)
|.|.|.+||.|++.. |.|+|||.++ .|+ +.++|.|++|+|.|+|.+||. +||..|.+.
T Consensus 809 y~C~CLPGfsGDG~~-c~dvDeC~ps-rCh-p~A~CyntpgsfsC~C~pGy~--GDGf~CVP~ 866 (1289)
T KOG1214|consen 809 YSCACLPGFSGDGHQ-CTDVDECSPS-RCH-PAATCYNTPGSFSCRCQPGYY--GDGFQCVPD 866 (1289)
T ss_pred EEEeecCCccCCccc-cccccccCcc-ccC-CCceEecCCCcceeecccCcc--CCCceecCC
Confidence 999999999999966 9999999988 999 899999999999999999997 789999886
No 8
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.81 E-value=2.1e-19 Score=157.64 Aligned_cols=89 Identities=22% Similarity=0.209 Sum_probs=71.6
Q ss_pred CCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCCCCceecCCCCCccccccccCc
Q 006839 72 KENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIEN 151 (629)
Q Consensus 72 ~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~~ 151 (629)
.+|..||++.+....+++ ++|+||+||+|+|.+|++|||++||+|||||||.+.. .+... .+...+
T Consensus 27 ~~~~~gC~~~~~~~~~l~------gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~--~~~~~------~~~~~~ 92 (120)
T cd02129 27 LTSSVLCSASDVPPGGLK------GKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLV--PPSGN------RSEYEK 92 (120)
T ss_pred CCCcCCCCccccCccccC------CeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCC--CCCCC------CCCCcC
Confidence 578899999876433444 9999999999999999999999999999999997532 11111 111257
Q ss_pred ccccEEEEeHHHHHHHHHHHcCC
Q 006839 152 ITIPSALIDKSFGETLKKALSGG 174 (629)
Q Consensus 152 i~IP~~~I~~~~G~~l~~~l~~~ 174 (629)
++||++||+++||++|++++.++
T Consensus 93 v~IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 93 IDIPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred CcccEEEEeHHHHHHHHHHhccC
Confidence 89999999999999999999865
No 9
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.80 E-value=2.1e-19 Score=158.40 Aligned_cols=105 Identities=29% Similarity=0.367 Sum_probs=83.4
Q ss_pred cccCcCCCCCCCCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCC
Q 006839 51 AIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIE 130 (629)
Q Consensus 51 ~~a~Fg~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~ 130 (629)
..|+||+ ++...+.+... .+|.+||++++. .+++ ++||||+||+|+|.+|++|||++||+||||||+.+
T Consensus 6 ~~~~~~~-~~~~~~~~~~~--~~p~~gC~~~~~--~~l~------gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~ 74 (117)
T cd04813 6 RYASFSP-ILNPHLRGSYK--VSPTDACSLQEH--AEID------GKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEP 74 (117)
T ss_pred cccccCC-ccCcccccccc--CCCCCCCCCCCc--CCcC------CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 4578994 45555777643 688899998843 2444 89999999999999999999999999999999886
Q ss_pred C-CceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcC
Q 006839 131 E-ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173 (629)
Q Consensus 131 ~-~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~ 173 (629)
+ .++.|..+++ ...++||+++|++++|+.|++.+.+
T Consensus 75 ~~~~~~m~~~~~-------~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 75 GRGLITMFSNGD-------TDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred cccceecccCCC-------CCCcEEEEEEEcHHHHHHHHHhccc
Confidence 5 3556653321 3478999999999999999988765
No 10
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.78 E-value=2.1e-18 Score=154.55 Aligned_cols=116 Identities=25% Similarity=0.361 Sum_probs=90.5
Q ss_pred cCcCCCCCCCCceeeEeccCC-CcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCCC
Q 006839 53 GNFGIPQYGGSMAGAVTYPKE-NRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEE 131 (629)
Q Consensus 53 a~Fg~~~~~~~~~g~l~~~~~-~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~~ 131 (629)
..|++..+.+.++|.+++... ..+||++.+....+++ +||+||+||+|+|.+|++|||++||++|||||+.++
T Consensus 6 ~~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~~~~~------GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~ 79 (122)
T cd04816 6 LSYSPSTPPGGVTAPLVPLDPERPAGCDASDYDGLDVK------GAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDG 79 (122)
T ss_pred EeccCCCCCCCcEEEEEEcCCCCccCCCccccCCCCcC------CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 457766677889999988533 2599998766443454 999999999999999999999999999999998764
Q ss_pred CceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCeEEEEE
Q 006839 132 ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (629)
Q Consensus 132 ~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~ 181 (629)
....+....+ ...++||+++|++++|+.|++++++|.+|++++
T Consensus 80 ~~~~~~~~~~-------~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 80 GGTAGTLGAP-------NIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred ccccccccCC-------CCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 3322111110 135689999999999999999999998877753
No 11
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.74 E-value=1.5e-17 Score=149.04 Aligned_cols=102 Identities=27% Similarity=0.373 Sum_probs=81.1
Q ss_pred CCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCC-CCceecCCCC
Q 006839 62 GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIE-EALITMDTPE 140 (629)
Q Consensus 62 ~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~-~~~~~m~~~~ 140 (629)
+.++|.+++. +.+||++.+++. +++ ++||||+||+|+|.+|++|||++||++|||||+.. +.+..+.
T Consensus 20 ~~~~g~lv~~--~~~gC~~~~~~~-~~~------gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~--- 87 (122)
T cd02130 20 GEVTGPLVVV--PNLGCDAADYPA-SVA------GNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTL--- 87 (122)
T ss_pred CCcEEEEEEe--CCCCCCcccCCc-CCC------CEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccccc---
Confidence 4568999883 568999876532 344 99999999999999999999999999999999873 3221111
Q ss_pred CccccccccCcccccEEEEeHHHHHHHHHHHcCCCeEEEEE
Q 006839 141 EDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (629)
Q Consensus 141 ~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~ 181 (629)
+....+.||+++|++++|+.|++.+++|.+|+++|
T Consensus 88 ------~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 88 ------GEPSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred ------CCCCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 11225689999999999999999999999888864
No 12
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.73 E-value=3.9e-17 Score=145.62 Aligned_cols=113 Identities=38% Similarity=0.612 Sum_probs=92.0
Q ss_pred ccCcCCCCCC---CCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEEC
Q 006839 52 IGNFGIPQYG---GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADD 128 (629)
Q Consensus 52 ~a~Fg~~~~~---~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~ 128 (629)
+|.||..... ..+.|.++. +.+.++|++.... .+++ ++|+|++||+|+|.+|+++|+++||+|+||||+
T Consensus 2 ~a~fg~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~-~~v~------GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~ 73 (118)
T cd04818 2 SAGFGPALTNVTADVVLAGAAP-ASNTDGCTAFTNA-AAFA------GKIALIDRGTCNFTVKVLNAQNAGAIAVIVANN 73 (118)
T ss_pred CcccCCcCccccccceeEEEec-CCcccccCCCCcC-CCCC------CEEEEEECCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 6889977664 447888876 6788999998752 2343 999999999999999999999999999999998
Q ss_pred CCC-CceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCeEEEEE
Q 006839 129 IEE-ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (629)
Q Consensus 129 ~~~-~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~ 181 (629)
.++ ..+.|..+. ....||+++|++++|+.|++++++|.+|+++|
T Consensus 74 ~~~~~~~~~~~~~---------~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 74 VAGGAPITMGGDD---------PDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred CCCCcceeccCCC---------CCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 864 345553221 24679999999999999999999998888764
No 13
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.69 E-value=2.2e-17 Score=145.48 Aligned_cols=135 Identities=20% Similarity=0.291 Sum_probs=104.8
Q ss_pred ccEEEEccCCccccccccccC-cCCCCCCCCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHH
Q 006839 34 NSLMVTSPEKIKGSHDSAIGN-FGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKV 112 (629)
Q Consensus 34 ~~~~v~~p~~~~~~~~~~~a~-Fg~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~ 112 (629)
-.|+|++|..++..|+..+|- ||..- ..+..+.-+++++|..||+.+.+. .... +.|+||+||+|+|..|.
T Consensus 33 ~~F~vlsP~~l~Yty~~~pAkdfG~~F-~~r~e~~~lV~adPp~aC~elrN~-~f~~------d~vaL~eRGeCSFl~Kt 104 (193)
T KOG3920|consen 33 MLFTVLSPYTLAYTYQMKPAKDFGVHF-PDRFENLELVLADPPHACEELRNE-IFAP------DSVALMERGECSFLVKT 104 (193)
T ss_pred EEEEecCcccEEEEEEecchhhhcccc-chhhcCcceeecCChhHHHHHhhc-ccCC------CcEEEEecCCceeeehh
Confidence 368999999999999988875 88543 446666555568999999999874 2332 68999999999999999
Q ss_pred HHHHHcCCcEEEEEECCCCC-----ceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCeEEEEEEe
Q 006839 113 WNAQKAGASAVLVADDIEEA-----LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDW 183 (629)
Q Consensus 113 ~nAq~aGA~avII~n~~~~~-----~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~~~ 183 (629)
+|+|+|||.|+||.|+.... .+.|.. +.+.+..+||++++-..+|-.++..|++-..+-+.++.
T Consensus 105 l~~e~aGa~aiiitd~~~~~~sf~~YveMI~-------D~sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~I 173 (193)
T KOG3920|consen 105 LNGEKAGATAIIITDSQNYEYSFHQYVEMIP-------DESQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDI 173 (193)
T ss_pred hhhhhcCceEEEEecCCCCchhHHHHHHhcC-------cccccccCCceEEEeccceEEEehhHHHhCCccEEEec
Confidence 99999999999999876422 456642 23345679999999999999999988875544444443
No 14
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.68 E-value=3.3e-16 Score=141.46 Aligned_cols=104 Identities=25% Similarity=0.259 Sum_probs=75.1
Q ss_pred cCCCCCCCCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcC-----HHHHHHHHHHcCCcEEEEEECC
Q 006839 55 FGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCF-----FALKVWNAQKAGASAVLVADDI 129 (629)
Q Consensus 55 Fg~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~-----F~~K~~nAq~aGA~avII~n~~ 129 (629)
|-.....+.++|.|++.. .-+|+-. ..+++ +||+||+||+|+ |.+|++|||+|||+|||||||.
T Consensus 27 ~~s~~~~g~~tg~lv~~g--~~g~d~~---~~d~~------GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~ 95 (139)
T cd04817 27 YASMPVTGSATGSLYYCG--TSGGSYI---CGGMA------GKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNA 95 (139)
T ss_pred ccccccCCcceEEEEEcc--CCCcccc---CCCcC------ccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCC
Confidence 433344556889887632 3456321 12344 999999999999 9999999999999999999998
Q ss_pred C--CCceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCeE
Q 006839 130 E--EALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMV 177 (629)
Q Consensus 130 ~--~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v 177 (629)
+ +.+..+.... ...++||+++|++++|++|+++|.++.+|
T Consensus 96 ~~~g~~~~~lg~~--------~~~~~IP~v~is~~dG~~L~~~l~~~~tv 137 (139)
T cd04817 96 ALAGLQNPFLVDT--------NNDTTIPSVSVDRADGQALLAALGQSTTV 137 (139)
T ss_pred CCCCcccccccCC--------CCCceEeEEEeeHHHHHHHHHHhcCCCee
Confidence 3 3232222111 12579999999999999999999766443
No 15
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.67 E-value=4.7e-16 Score=139.77 Aligned_cols=92 Identities=28% Similarity=0.339 Sum_probs=71.7
Q ss_pred CCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCCCCceecCCCCCccccccccCc
Q 006839 72 KENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIEN 151 (629)
Q Consensus 72 ~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~~ 151 (629)
+.+.+||+++.....++ +++|+||+||+|+|.+|++|||++||++|||||+.++.. .+... ..
T Consensus 38 ~~~~~gC~~~~~~~~~~------~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~-~~~~~----------~~ 100 (129)
T cd02124 38 SVADDACQPLPDDTPDL------SGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPT-DQVGS----------DA 100 (129)
T ss_pred CCCcccCcCCCcccccc------cCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcc-cccCC----------CC
Confidence 46779999985432233 389999999999999999999999999999999986543 23211 12
Q ss_pred ccccEEEEeHHHHHHHHHHHcCCCeEEEEE
Q 006839 152 ITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (629)
Q Consensus 152 i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~ 181 (629)
..||.+++ +++|++|+++|++|..|+++|
T Consensus 101 ~~~~~~~~-~~~G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 101 DSIIAAVT-PEDGEAWIDALAAGSNVTVDF 129 (129)
T ss_pred cceeeEEe-HHHHHHHHHHHhcCCeEEEeC
Confidence 34566666 999999999999998888764
No 16
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6.4e-16 Score=157.46 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=95.3
Q ss_pred cccccccCcCCCCCCCCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEE
Q 006839 47 SHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVA 126 (629)
Q Consensus 47 ~~~~~~a~Fg~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~ 126 (629)
++...+|.||+....+.+.|.++. +.|.+||+++.+.. .. ......+++||+||+|+|.+|+++||++|++|||||
T Consensus 35 sf~d~~a~f~~s~~~e~~~G~l~~-~ep~~aC~~i~~~p-~~--~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVy 110 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSEGNLGVLVV-AEPLNACNPITNFP-EH--STRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVY 110 (348)
T ss_pred cccCCccccCCccccccceeeeec-CCCccccCccccCc-cC--CCCCcceEEEEEccCCchHHHHhhcccccCceEEEe
Confidence 688999999999999999999865 78889999997732 22 234447999999999999999999999999999999
Q ss_pred ECCCCC-ceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCC
Q 006839 127 DDIEEA-LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGG 174 (629)
Q Consensus 127 n~~~~~-~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~ 174 (629)
||.+.+ ++.|... ..+|.||++||+...|+.|+++....
T Consensus 111 nn~~~~~lv~~~~~---------~~~v~i~~~~vs~~~ge~l~~~~~~~ 150 (348)
T KOG4628|consen 111 NNVGSEDLVAMASN---------PSKVDIHIVFVSVFSGELLSSYAGRT 150 (348)
T ss_pred cCCCCchheeeccC---------CccceeEEEEEeeehHHHHHHhhccc
Confidence 988654 5666332 23789999999999999999976544
No 17
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.53 E-value=2.6e-14 Score=147.95 Aligned_cols=174 Identities=21% Similarity=0.322 Sum_probs=116.4
Q ss_pred ccccccCcCCCCCCCCceeeEec--cCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEE
Q 006839 48 HDSAIGNFGIPQYGGSMAGAVTY--PKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLV 125 (629)
Q Consensus 48 ~~~~~a~Fg~~~~~~~~~g~l~~--~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII 125 (629)
+....+.||..+....-...+.+ -..|.|-|++... .++ +++++|.||+|+|.+|+++||+|||.|++|
T Consensus 55 ~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~---kl~------~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLli 125 (541)
T KOG2442|consen 55 FAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQS---KLS------GKVALVFRGNCSFTEKAKLAQAAGASALLI 125 (541)
T ss_pred hhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCc---ccc------ceeEEEecccceeehhhhhhhhcCceEEEE
Confidence 34566778865554332222211 1468899998764 333 899999999999999999999999999999
Q ss_pred EECCCCCceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCeEEEEEEecccccCCCCceeEE--------
Q 006839 126 ADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYE-------- 197 (629)
Q Consensus 126 ~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~~~~~~~~~~~~~v~~~-------- 197 (629)
+||.. ++.-|...+.+ ...+++||++||++++|+.|.+....+.+|++.|+.+. ...++|.
T Consensus 126 in~~~-d~~~~~~~~~~-----~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaPk-----~P~vD~~~v~iwlmA 194 (541)
T KOG2442|consen 126 INNKK-DLLFMPCGNKE-----TSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAPK-----RPAVDYAMVFIWLMA 194 (541)
T ss_pred EcCch-hhccCCCCCCC-----ccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECCC-----CCCccHHHHHHHHHH
Confidence 99975 44445433322 24589999999999999999999999999999999832 4456555
Q ss_pred --------EEeccCCccchhhhhHHHHHHHhhHHH---HHHhcCCceeEEEEEEEec
Q 006839 198 --------LWTNSNDECGVKCDMLMAFVKEFRGPA---QILEKGGYTQFTPHYITWY 243 (629)
Q Consensus 198 --------~~~~s~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~f~p~~~~~~ 243 (629)
||+...+.-.. .++.+.+++-.... +.-++++..+|+|.+....
T Consensus 195 VgTVa~ggyWs~~t~~~~~--~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~f 249 (541)
T KOG2442|consen 195 VGTVACGGYWSGLTEREKA--IEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFF 249 (541)
T ss_pred HhHhhccchhhhccChhhh--hhhhhhcccccccccccccCCccccEEeeeeEEEEe
Confidence 67776664211 12222222111100 0111247889999887543
No 18
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=99.51 E-value=2.6e-14 Score=166.28 Aligned_cols=109 Identities=33% Similarity=0.815 Sum_probs=91.1
Q ss_pred ccccCCCCCCCCCcCCCccccccCC-CceeeeeCCCCCeeEeCCCccccccCCCCcccCCCCCCCCCCCCCCccceeeeC
Q 006839 419 NECLDNNGGCWQDKTANVTACKDTF-RGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDS 497 (629)
Q Consensus 419 deC~~~~~~C~~~~~~~~~~C~n~~-g~~~C~C~~~~G~~~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~~~ 497 (629)
+.|..+| |+ +++.|..++ |+|.|.|++ +|.| ++|+ ++...|..+ +|..+ ++|...
T Consensus 3865 d~C~~np--Cq-----hgG~C~~~~~ggy~CkCps----qysG---~~CE-i~~epC~sn--PC~~G-------gtCip~ 3920 (4289)
T KOG1219|consen 3865 DPCNDNP--CQ-----HGGTCISQPKGGYKCKCPS----QYSG---NHCE-IDLEPCASN--PCLTG-------GTCIPF 3920 (4289)
T ss_pred cccccCc--cc-----CCCEecCCCCCceEEeCcc----cccC---cccc-cccccccCC--CCCCC-------CEEEec
Confidence 5665555 66 779999884 789999999 6665 5698 456889866 67666 889988
Q ss_pred C-CceeeCCCCcccCCccCCC-C-CCCCCCCCCCCCCCCceeeCCCceeEecCCCCcccCCCCccc
Q 006839 498 E-NGKCQCPPGFKGDGVKSCV-D-IDECKERKACQCSECSCKDTWGSYECTCSGDLLYIRDHDTCI 560 (629)
Q Consensus 498 ~-~~~C~C~~Gf~g~~~~~C~-d-ideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~~g~~C~ 560 (629)
. +|.|.|+.||+|.. |+ + |+||+.+ +|. .++.|+|++|+|.|.|.+||. |.+|-
T Consensus 3921 ~n~f~CnC~~gyTG~~---Ce~~Gi~eCs~n-~C~-~gg~C~n~~gsf~CncT~g~~----gr~c~ 3977 (4289)
T KOG1219|consen 3921 YNGFLCNCPNGYTGKR---CEARGISECSKN-VCG-TGGQCINIPGSFHCNCTPGIL----GRTCC 3977 (4289)
T ss_pred CCCeeEeCCCCccCce---eecccccccccc-ccc-CCceeeccCCceEeccChhHh----cccCc
Confidence 8 99999999999987 86 3 8999988 999 999999999999999999997 55653
No 19
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.49 E-value=1.3e-13 Score=124.18 Aligned_cols=98 Identities=36% Similarity=0.431 Sum_probs=75.1
Q ss_pred CCCcCCCCCCC--CCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCCCCceecCCCCCcccccccc
Q 006839 72 KENRKGCREFG--DFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYI 149 (629)
Q Consensus 72 ~~~~~gC~~~~--~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~ 149 (629)
..+..+|.+.. ....+++ ++|||++||+|+|.+|+++||++||+|+||+|+.+.....|....+ ..
T Consensus 27 ~~~~~~C~~~~~~~~~~~~~------GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~------~~ 94 (126)
T cd00538 27 AGPLVGCGYGTTDDSGADVK------GKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGL------ES 94 (126)
T ss_pred ccceEEEecCcccccCCCcc------ceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccC------CC
Confidence 35667898875 2222343 9999999999999999999999999999999998643333321111 02
Q ss_pred CcccccEEEEeHHHHHHHHHHHcCCCeEEEEE
Q 006839 150 ENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (629)
Q Consensus 150 ~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~ 181 (629)
....||+++|++++|+.|+++++++.+|++++
T Consensus 95 ~~~~iP~~~is~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 95 TDPSIPTVGISYADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred CCCcEeEEEeCHHHHHHHHHHHhcCCceEEeC
Confidence 35679999999999999999999988777653
No 20
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.49 E-value=2.8e-14 Score=123.44 Aligned_cols=68 Identities=37% Similarity=0.455 Sum_probs=52.5
Q ss_pred CcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCCCCceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHH
Q 006839 96 PNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKAL 171 (629)
Q Consensus 96 ~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l 171 (629)
++||||+||.|+|.+|+++||++||+||||+|.. .....+. .......+.||+++|++++|+.|++++
T Consensus 34 gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~-~~~~~~~-------~~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 34 GKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPP-PNNGSMI-------DSEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp TSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TS-CSCTTTT-------CEBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred ceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCC-ccccCcc-------cccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 9999999999999999999999999999999922 1111111 112234679999999999999999875
No 21
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.39 E-value=3.3e-12 Score=117.78 Aligned_cols=100 Identities=27% Similarity=0.274 Sum_probs=74.6
Q ss_pred cCcCCCCCCCCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCCCC
Q 006839 53 GNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA 132 (629)
Q Consensus 53 a~Fg~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~~~ 132 (629)
..++.+...+...+.+++.. . |.+-+....+++ ++||||+||+|+|.+|+++|+++||++|||+|+....
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g---~-g~~~d~~~~dv~------GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~ 84 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAG---L-GTPEDFEGKDVK------GKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL 84 (143)
T ss_pred ccCCCcCCCCCcEEEEEEcc---C-CchhccCCCCcc------ceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc
Confidence 44666666677899998842 2 233222222343 9999999999999999999999999999999987543
Q ss_pred ceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcC
Q 006839 133 LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173 (629)
Q Consensus 133 ~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~ 173 (629)
..|... ....||+++|++++|+.|++++++
T Consensus 85 -~~~~~~----------~~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 85 -IPGTLG----------EAVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred -ccccCC----------CCCeEeEEEecHHHHHHHHHHHhC
Confidence 222110 134699999999999999999987
No 22
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.36 E-value=6.7e-12 Score=113.13 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCc--CHHHHHHHHHHcCCcEEEEEECCCCCceecCC
Q 006839 61 GGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDC--FFALKVWNAQKAGASAVLVADDIEEALITMDT 138 (629)
Q Consensus 61 ~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C--~F~~K~~nAq~aGA~avII~n~~~~~~~~m~~ 138 (629)
.+.++|.+++.. .| .+-++.+.+++ ||||||+||.| +|.+|+++|+++||+||||+|+.++.+..+..
T Consensus 20 ~~~~~~~lV~~g---~G-~~~d~~~~~v~------GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~ 89 (127)
T cd04819 20 SGEAKGEPVDAG---YG-LPKDFDGLDLE------GKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGD 89 (127)
T ss_pred CCCeeEEEEEeC---CC-CHHHcCCCCCC------CeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccc
Confidence 345789998842 23 22222222344 99999999999 99999999999999999999987665432211
Q ss_pred CCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCeEEEE
Q 006839 139 PEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVN 180 (629)
Q Consensus 139 ~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~ 180 (629)
.. ...+....||++.|+.+||+.|++.+++|..|.++
T Consensus 90 ~~-----~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 90 EG-----TEDGPPSPIPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred cc-----ccCCCCCCCCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 11 11123468999999999999999999998877664
No 23
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.27 E-value=1.1e-11 Score=112.66 Aligned_cols=109 Identities=19% Similarity=0.117 Sum_probs=78.4
Q ss_pred cCCCCCCCCceeeEeccCCCcCCCCCCCCCCCccccCCCCCCcEEEEeCCCc------CHHHH-------HHHHHHcCCc
Q 006839 55 FGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDC------FFALK-------VWNAQKAGAS 121 (629)
Q Consensus 55 Fg~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C------~F~~K-------~~nAq~aGA~ 121 (629)
|++...++.++|++++..+ .+ +..+++..+++ ||||||+||.| +|..| +.+|+++||.
T Consensus 8 ~s~~t~~~gvta~vv~v~~--~~-~~~~~~~~~v~------GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~ 78 (134)
T cd04815 8 GSVATPPEGITAEVVVVKS--FD-ELKAAPAGAVK------GKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAV 78 (134)
T ss_pred CCCCCCCCCcEEEEEEECC--HH-HHHhcchhhcC------CeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCE
Confidence 4444555669999987432 12 21122112343 99999999999 99999 7999999999
Q ss_pred EEEEEECCCCC---c--eecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcCCCeEEEEE
Q 006839 122 AVLVADDIEEA---L--ITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (629)
Q Consensus 122 avII~n~~~~~---~--~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~v~~~~ 181 (629)
|+||+|+.+.. . .+|..+ ...+.||++.|+.+||+.|.+.+++|.+|.++|
T Consensus 79 avIv~s~~~~~~~~~~~G~~~~~---------~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 79 AVLIRSIGTDSHRSPHTGMMSYD---------DGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred EEEEEecCcccCCCCcCCccccC---------CCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 99999975432 1 112111 124579999999999999999999998888764
No 24
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.11 E-value=3.6e-10 Score=101.95 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=67.4
Q ss_pred CcCCCCCCCCCCCccccCCCCCCcEEEEeCCCc-CHHHHHHHHHHcCCcEEEEEECCCCCceecCCCCCccccccccCcc
Q 006839 74 NRKGCREFGDFGISFKAKPGALPNFVLVDRGDC-FFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENI 152 (629)
Q Consensus 74 ~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C-~F~~K~~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~~i 152 (629)
...+|++.......++ |||||++||.| +|.+|+.+|+++||.|+|++|+..+.. .+. ....
T Consensus 36 ~~~~C~~~~~~~~~v~------GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~-~~~-----------~~~~ 97 (126)
T cd02120 36 DASLCLPGSLDPSKVK------GKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL-DVV-----------ADAH 97 (126)
T ss_pred ccccCCCCCCChhhcc------ccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc-eec-----------cccc
Confidence 4478987654333444 99999999999 999999999999999999999875432 111 1135
Q ss_pred cccEEEEeHHHHHHHHHHHcCCCe
Q 006839 153 TIPSALIDKSFGETLKKALSGGEM 176 (629)
Q Consensus 153 ~IP~~~I~~~~G~~l~~~l~~~~~ 176 (629)
.||+++|++++|+.|+++++++..
T Consensus 98 ~iP~v~I~~~~g~~l~~y~~~~~~ 121 (126)
T cd02120 98 VLPAVHVDYEDGTAILSYINSTSN 121 (126)
T ss_pred ccceEEECHHHHHHHHHHHHcCCC
Confidence 799999999999999999987653
No 25
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=99.03 E-value=1.4e-09 Score=102.66 Aligned_cols=117 Identities=25% Similarity=0.269 Sum_probs=73.8
Q ss_pred ccCcCCCCCCCCceeeEeccCCCcCCCCCCCCCCCccc-cCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCC
Q 006839 52 IGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFK-AKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIE 130 (629)
Q Consensus 52 ~a~Fg~~~~~~~~~g~l~~~~~~~~gC~~~~~~~~~~~-~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~ 130 (629)
...|-.....+.++|.++|. ..| ..-++. .+. ......++||||+||.|+|.+|+++||++||+|||||+|..
T Consensus 17 ~~~f~~~s~~G~v~g~lVyv---n~G-~~~Df~--~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~ 90 (183)
T cd02128 17 PGGYVAYSAAGTVTGKLVYA---NYG-RKKDFE--DLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPA 90 (183)
T ss_pred cccccCCCCCCceEEEEEEc---CCC-CHHHHH--HHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHH
Confidence 33455444556789999984 234 322221 000 01122399999999999999999999999999999999842
Q ss_pred CC-------------------ceecCCCCCccc---cccccCcccccEEEEeHHHHHHHHHHHcCC
Q 006839 131 EA-------------------LITMDTPEEDIS---SAKYIENITIPSALIDKSFGETLKKALSGG 174 (629)
Q Consensus 131 ~~-------------------~~~m~~~~~~~~---~~~~~~~i~IP~~~I~~~~G~~l~~~l~~~ 174 (629)
+. ..+++.+..... ......-.+||++=||+.+++.|++.|.-.
T Consensus 91 d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 91 DFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred HcCcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 11 111111111100 000012357999999999999999999643
No 26
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.91 E-value=4.8e-09 Score=114.65 Aligned_cols=116 Identities=25% Similarity=0.527 Sum_probs=95.5
Q ss_pred ecCeeeeccccCCceeeeccCCCccCCCCccccCC----CcccccCCCCCCCCCcCCCccccccC-CCceeeeeCCCCCe
Q 006839 382 VNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSG----ETNECLDNNGGCWQDKTANVTACKDT-FRGRVCECPLVDGV 456 (629)
Q Consensus 382 in~~~~~c~~~~~~~~c~cc~Gf~~~~~~~~C~~~----d~deC~~~~~~C~~~~~~~~~~C~n~-~g~~~C~C~~~~G~ 456 (629)
..++.-.|.+.++.+.|.|..||.-..++.+|..- .++.|..+.+.|.-+ .++.|+.. .++|.|.|-|
T Consensus 743 ~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~---g~a~c~~hGgs~y~C~CLP---- 815 (1289)
T KOG1214|consen 743 RCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIA---GQARCVHHGGSTYSCACLP---- 815 (1289)
T ss_pred CCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcC---CceEEEecCCceEEEeecC----
Confidence 35666778999999999999999888888889731 467898887888743 34667666 4679999999
Q ss_pred eEeCCCccccccCCCCcccCCCCCCCCCCCCCCccceeeeCC-CceeeCCCCcccCCccCCC
Q 006839 457 QFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDSE-NGKCQCPPGFKGDGVKSCV 517 (629)
Q Consensus 457 ~~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~~~~-~~~C~C~~Gf~g~~~~~C~ 517 (629)
+|+||| ..|.+. |+|. +..|+.. +.|.|++ ++.|+|.+||.|++.+ |.
T Consensus 816 GfsGDG-~~c~dv--DeC~--psrChp~-------A~CyntpgsfsC~C~pGy~GDGf~-CV 864 (1289)
T KOG1214|consen 816 GFSGDG-HQCTDV--DECS--PSRCHPA-------ATCYNTPGSFSCRCQPGYYGDGFQ-CV 864 (1289)
T ss_pred CccCCc-cccccc--cccC--ccccCCC-------ceEecCCCcceeecccCccCCCce-ec
Confidence 788999 889887 9998 4478877 9999999 9999999999999966 75
No 27
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.69 E-value=1.4e-08 Score=72.62 Aligned_cols=41 Identities=41% Similarity=0.851 Sum_probs=36.2
Q ss_pred CCCCCCCC-CCCCCCCCceeeCCCceeEecCCCCcccCCCCcc
Q 006839 518 DIDECKER-KACQCSECSCKDTWGSYECTCSGDLLYIRDHDTC 559 (629)
Q Consensus 518 dideC~~~-~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~~g~~C 559 (629)
|||||... +.|. .++.|+|+.|+|+|.|++||....++..|
T Consensus 1 DidEC~~~~~~C~-~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCP-ENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSS-TTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCC-CCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 79999987 7898 88999999999999999999866666655
No 28
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.60 E-value=4.6e-08 Score=115.84 Aligned_cols=92 Identities=28% Similarity=0.677 Sum_probs=79.5
Q ss_pred CCceeeeccCCCccCCCCccccCCCcccccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCeeEeCCCccccccCCCC
Q 006839 393 KGAVLKAICSGFEETTEPAVCLSGETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPG 472 (629)
Q Consensus 393 ~~~~~c~cc~Gf~~~~~~~~C~~~d~deC~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~~~~dg~~~C~~~~~~ 472 (629)
.++|.|.|.+-| .|..|+. ++++|..+| |. ++++|+...++|.|.|+. | |+| .+|+..+++
T Consensus 3883 ~ggy~CkCpsqy----sG~~CEi-~~epC~snP--C~-----~GgtCip~~n~f~CnC~~--g--yTG---~~Ce~~Gi~ 3943 (4289)
T KOG1219|consen 3883 KGGYKCKCPSQY----SGNHCEI-DLEPCASNP--CL-----TGGTCIPFYNGFLCNCPN--G--YTG---KRCEARGIS 3943 (4289)
T ss_pred CCceEEeCcccc----cCccccc-ccccccCCC--CC-----CCCEEEecCCCeeEeCCC--C--ccC---ceeeccccc
Confidence 378999999999 6889997 889998776 87 779999999999999999 4 454 559986679
Q ss_pred cccCCCCCCCCCCCCCCccceeeeCC-CceeeCCCCcccCC
Q 006839 473 KCKINNGGCWHESKDGHTYSACLDSE-NGKCQCPPGFKGDG 512 (629)
Q Consensus 473 ~C~~~~~~C~~~~~~~~~~~~C~~~~-~~~C~C~~Gf~g~~ 512 (629)
+|+-+ .|.+. ++|.|.+ +|.|.|-+||.|..
T Consensus 3944 eCs~n--~C~~g-------g~C~n~~gsf~CncT~g~~gr~ 3975 (4289)
T KOG1219|consen 3944 ECSKN--VCGTG-------GQCINIPGSFHCNCTPGILGRT 3975 (4289)
T ss_pred ccccc--cccCC-------ceeeccCCceEeccChhHhccc
Confidence 99865 78887 9999999 99999999999876
No 29
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.60 E-value=3.8e-08 Score=112.62 Aligned_cols=105 Identities=27% Similarity=0.662 Sum_probs=81.6
Q ss_pred CCCceeeeeCCCCCeeEeCCCccccccCCCCcccCCCCCCCCCCCCCCccceeeeCC-CceeeCCCCcccCCccCCC---
Q 006839 442 TFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDSE-NGKCQCPPGFKGDGVKSCV--- 517 (629)
Q Consensus 442 ~~g~~~C~C~~~~G~~~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~~~~-~~~C~C~~Gf~g~~~~~C~--- 517 (629)
..++++|.|++ +|++|- |+.. +|.|-.. +|.++ +.|.... +|.|.|.+||+|.. |+
T Consensus 1218 pvnglrCrCPp----GFTgd~---CeTe-iDlCYs~--pC~nn-------g~C~srEggYtCeCrpg~tGeh---CEvs~ 1277 (2531)
T KOG4289|consen 1218 PVNGLRCRCPP----GFTGDY---CETE-IDLCYSG--PCGNN-------GRCRSREGGYTCECRPGFTGEH---CEVSA 1277 (2531)
T ss_pred ccCceeEeCCC----CCCccc---ccch-hHhhhcC--CCCCC-------CceEEecCceeEEecCCccccc---eeeec
Confidence 45779999999 556654 8743 6889644 78776 8999888 99999999999987 75
Q ss_pred CCCCCCCCCCCCCCCCceeeCC-CceeEecCCCCcccCCCCccccccccccchhH
Q 006839 518 DIDECKERKACQCSECSCKDTW-GSYECTCSGDLLYIRDHDTCISKTATEVRSAW 571 (629)
Q Consensus 518 dideC~~~~~C~~~~~~C~nt~-Gsy~C~C~~G~~~~~~g~~C~~~~~~~~~~~~ 571 (629)
.--.|.++ .|. ++++|+|.. |+|.|.|+.| ..++..|.....+.+.-++
T Consensus 1278 ~agrCvpG-vC~-nggtC~~~~nggf~c~Cp~g---e~e~prC~v~trSFp~~sf 1327 (2531)
T KOG4289|consen 1278 RAGRCVPG-VCK-NGGTCVNLLNGGFCCHCPYG---EFEDPRCEVTTRSFPPESF 1327 (2531)
T ss_pred ccCccccc-eec-CCCEEeecCCCceeccCCCc---ccCCCceEEEeeccCchhe
Confidence 23458877 999 999999976 8999999999 3567789887665444443
No 30
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.53 E-value=4.5e-07 Score=88.66 Aligned_cols=120 Identities=29% Similarity=0.327 Sum_probs=77.7
Q ss_pred CCceeeEeccCCCcCCCCCCCCC-----CCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCCCCc---
Q 006839 62 GSMAGAVTYPKENRKGCREFGDF-----GISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEAL--- 133 (629)
Q Consensus 62 ~~~~g~l~~~~~~~~gC~~~~~~-----~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~~~~--- 133 (629)
+.++|.+||.. .|..-++. +.+++ |+||||++|.+.+.+|+++|+++||+|||||++..+.-
T Consensus 43 g~v~g~lVyvn----yG~~~D~~~L~~~gvdv~------GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~ 112 (220)
T cd02121 43 GNVTAELVYAN----YGSPEDFEYLEDLGIDVK------GKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYIT 112 (220)
T ss_pred CCceEEEEEcC----CCcHHHHHHHhhcCCCCC------CeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhccccc
Confidence 45899999842 34332221 12333 99999999999999999999999999999998753210
Q ss_pred -----------------eec-------CCCCCc-c----c-------cc-cccCcccccEEEEeHHHHHHHHHHHcCCCe
Q 006839 134 -----------------ITM-------DTPEED-I----S-------SA-KYIENITIPSALIDKSFGETLKKALSGGEM 176 (629)
Q Consensus 134 -----------------~~m-------~~~~~~-~----~-------~~-~~~~~i~IP~~~I~~~~G~~l~~~l~~~~~ 176 (629)
+.. ..++|. + + .. ....-.+||++=||..|++.|++.|....
T Consensus 113 ~~~~~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~- 191 (220)
T cd02121 113 GENGKTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG- 191 (220)
T ss_pred ccccccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC-
Confidence 000 001110 0 0 00 11123579999999999999999997543
Q ss_pred EEEEEEecccccCCCCceeEEEE
Q 006839 177 VNVNLDWREAVPHPDDRVEYELW 199 (629)
Q Consensus 177 v~~~~~~~~~~~~~~~~v~~~~~ 199 (629)
+--+|...+ .+.|.+|
T Consensus 192 --~p~~W~g~l-----~~~y~~g 207 (220)
T cd02121 192 --APSDWQGGL-----PVTYRLG 207 (220)
T ss_pred --CCccccCCC-----CCceeeC
Confidence 445674433 3677776
No 31
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.44 E-value=1.8e-06 Score=79.46 Aligned_cols=96 Identities=20% Similarity=0.158 Sum_probs=66.7
Q ss_pred CCceeeEeccCC--CcCCCCCCCCCCCccccCCCCCCcEEEEeCCC------------------cCHHHHHHHHHHcCCc
Q 006839 62 GSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFVLVDRGD------------------CFFALKVWNAQKAGAS 121 (629)
Q Consensus 62 ~~~~g~l~~~~~--~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~------------------C~F~~K~~nAq~aGA~ 121 (629)
+.++|.+|+... ...+|...++.+.+++ ||||||.||. |+|..|+.+|+++||+
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~Dy~giDVk------GKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDDYAGLDVK------GKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAA 91 (151)
T ss_pred CCceEeEEEecCCcCccccchhhccCCCCC------CeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCe
Confidence 568999988632 3467776665555666 9999999985 9999999999999999
Q ss_pred EEEEEECCCCCceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHc
Q 006839 122 AVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALS 172 (629)
Q Consensus 122 avII~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~ 172 (629)
|||||++..+....-..+. .. .. -.++.|+....+.+..++.
T Consensus 92 aVIv~~d~~~~~~~~~~~~----~~----~~-~~~~~~~~~~~~~~~~~~~ 133 (151)
T cd04822 92 AVIVVNGPNSHSGDADRLP----RF----GG-TAPQRVDIAAADPWFTAAE 133 (151)
T ss_pred EEEEEeCCcccCccccccc----cc----Cc-cceEEechHHHHHHhhhhh
Confidence 9999998754321000000 00 00 1178888888888877643
No 32
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.43 E-value=2.6e-07 Score=105.96 Aligned_cols=103 Identities=30% Similarity=0.618 Sum_probs=80.9
Q ss_pred cCeeEecCeeeeccccCCceeeeccCCCccCCCCccccCCCcccccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCe
Q 006839 377 LPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSGETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGV 456 (629)
Q Consensus 377 ~P~v~in~~~~~c~~~~~~~~c~cc~Gf~~~~~~~~C~~~d~deC~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~ 456 (629)
.|.+.....-+|-.+..++..|.|.+|| .+..|++ ++|+|-..+ |. |+++|....|+|+|.|.+ ||
T Consensus 1203 apf~~s~s~lfRpi~pvnglrCrCPpGF----Tgd~CeT-eiDlCYs~p--C~-----nng~C~srEggYtCeCrp--g~ 1268 (2531)
T KOG4289|consen 1203 APFLASDSVLFRPIHPVNGLRCRCPPGF----TGDYCET-EIDLCYSGP--CG-----NNGRCRSREGGYTCECRP--GF 1268 (2531)
T ss_pred CccccccceeeeeccccCceeEeCCCCC----Ccccccc-hhHhhhcCC--CC-----CCCceEEecCceeEEecC--Cc
Confidence 4555556677888888899999999999 5668998 999998766 98 779999999999999999 55
Q ss_pred eEeCCCccccccC-CCCcccCCCCCCCCCCCCCCccceeeeCC--CceeeCCCC
Q 006839 457 QFKGDGYSHCEVS-GPGKCKINNGGCWHESKDGHTYSACLDSE--NGKCQCPPG 507 (629)
Q Consensus 457 ~~~~dg~~~C~~~-~~~~C~~~~~~C~~~~~~~~~~~~C~~~~--~~~C~C~~G 507 (629)
. | ++|+-. ....|. ++.|.+. ++|.+.. ++.|.|+.|
T Consensus 1269 --t--G-ehCEvs~~agrCv--pGvC~ng-------gtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1269 --T--G-EHCEVSARAGRCV--PGVCKNG-------GTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred --c--c-cceeeecccCccc--cceecCC-------CEEeecCCCceeccCCCc
Confidence 4 5 678732 123454 4566665 7899988 899999965
No 33
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.33 E-value=1.7e-06 Score=78.70 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=54.2
Q ss_pred cccCcCCCCCCCCceeeEeccCC--CcCCCCCCCCCCCccccCCCCCCcEEEEeCCCc------------------CHHH
Q 006839 51 AIGNFGIPQYGGSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFVLVDRGDC------------------FFAL 110 (629)
Q Consensus 51 ~~a~Fg~~~~~~~~~g~l~~~~~--~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C------------------~F~~ 110 (629)
.+.+|+. ...+.+.+|+... ...+|.--++.+.+++ ||||||.||.| +|..
T Consensus 10 ~~~~~~~---~~~~~aelVfvGyGi~a~~~~~dDYag~DVk------GKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~ 80 (142)
T cd04814 10 AMLNVDA---VAIKDAPLVFVGYGIKAPELSWDDYAGLDVK------GKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTY 80 (142)
T ss_pred cccCCCC---ccccceeeEEecCCcCCCCCChhhcCCCCCC------CcEEEEEcCCCCcccccccccccccccccCHHH
Confidence 3445552 2457788887532 2356776666555666 99999999999 7999
Q ss_pred HHHHHHHcCCcEEEEEECCC
Q 006839 111 KVWNAQKAGASAVLVADDIE 130 (629)
Q Consensus 111 K~~nAq~aGA~avII~n~~~ 130 (629)
|+.+|+++||+||||+++.+
T Consensus 81 K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 81 KYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred HHHHHHHCCCcEEEEEeCCC
Confidence 99999999999999999875
No 34
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.30 E-value=5.5e-07 Score=64.26 Aligned_cols=39 Identities=28% Similarity=0.694 Sum_probs=34.2
Q ss_pred CcccccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCeeEeCCC
Q 006839 417 ETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDG 462 (629)
Q Consensus 417 d~deC~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~~~~dg 462 (629)
|||||...++.|. .++.|+|+.|+|.|.|++ ||.+..++
T Consensus 1 DidEC~~~~~~C~-----~~~~C~N~~Gsy~C~C~~--Gy~~~~~~ 39 (42)
T PF07645_consen 1 DIDECAEGPHNCP-----ENGTCVNTEGSYSCSCPP--GYELNDDG 39 (42)
T ss_dssp ESSTTTTTSSSSS-----TTSEEEEETTEEEEEEST--TEEECTTS
T ss_pred CccccCCCCCcCC-----CCCEEEcCCCCEEeeCCC--CcEECCCC
Confidence 6899999888897 569999999999999999 98866655
No 35
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.20 E-value=4.6e-06 Score=75.37 Aligned_cols=64 Identities=19% Similarity=0.112 Sum_probs=50.8
Q ss_pred CCCceeeEeccCC--CcCCCCCCCCCCCccccCCCCCCcEEEEeCCCcC------------HHHHHHHHHHcCCcEEEEE
Q 006839 61 GGSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFVLVDRGDCF------------FALKVWNAQKAGASAVLVA 126 (629)
Q Consensus 61 ~~~~~g~l~~~~~--~~~gC~~~~~~~~~~~~~~~~~~~i~Lv~RG~C~------------F~~K~~nAq~aGA~avII~ 126 (629)
.+.++|.+|+... ...+|..-++.+.+++ ||||||+||.|+ |..|+++|+++||+|||||
T Consensus 19 ~g~v~gelVfvGyG~~~~~~~~~Dy~~iDVk------GKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~ 92 (137)
T cd04820 19 AASVEAPLVFVGYGLVAPELGHDDYAGLDVK------GKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITL 92 (137)
T ss_pred CCCceEeEEEecCCcCccCcCHhhccCCCCC------CeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEE
Confidence 3568899988532 3456766555445665 999999999995 8899999999999999999
Q ss_pred ECCC
Q 006839 127 DDIE 130 (629)
Q Consensus 127 n~~~ 130 (629)
++..
T Consensus 93 ~d~~ 96 (137)
T cd04820 93 TTPR 96 (137)
T ss_pred eCCc
Confidence 9864
No 36
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=98.05 E-value=1.9e-05 Score=87.29 Aligned_cols=149 Identities=26% Similarity=0.549 Sum_probs=99.2
Q ss_pred cCCceeeeccCCCccCCCCccccCCCcccccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCeeEeCCCc----cccc
Q 006839 392 EKGAVLKAICSGFEETTEPAVCLSGETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGY----SHCE 467 (629)
Q Consensus 392 ~~~~~~c~cc~Gf~~~~~~~~C~~~d~deC~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~~~~dg~----~~C~ 467 (629)
....+.+.|..||. +..|.. ..++|......|. +...|.+..++|.|.|++ ||....... ..|.
T Consensus 148 ~~~~~~c~C~~g~~----~~~~~~-~~~~C~~~~~~c~-----~~~~C~~~~~~~~C~c~~--~~~~~~~~~~~~~~~c~ 215 (487)
T KOG1217|consen 148 SVGPFRCSCTEGYE----GEPCET-DLDECIQYSSPCQ-----NGGTCVNTGGSYLCSCPP--GYTGSTCETTGNGGTCV 215 (487)
T ss_pred CCCceeeeeCCCcc----cccccc-cccccccCCCCcC-----CCcccccCCCCeeEeCCC--CccCCcCcCCCCCceEe
Confidence 34567889999994 455552 3378986666687 668999999999999999 665332220 0122
Q ss_pred cCCCCcccCC----CCCCCCCCCCCCcc-ceeeeCC-CceeeCCCCcccCCccCCCCCCCCCCCCCCCCCCCceeeCCCc
Q 006839 468 VSGPGKCKIN----NGGCWHESKDGHTY-SACLDSE-NGKCQCPPGFKGDGVKSCVDIDECKERKACQCSECSCKDTWGS 541 (629)
Q Consensus 468 ~~~~~~C~~~----~~~C~~~~~~~~~~-~~C~~~~-~~~C~C~~Gf~g~~~~~C~dideC~~~~~C~~~~~~C~nt~Gs 541 (629)
+. ..|... ...|......+... +.|.+.. ++.|.|++||.+.....|.++++|.....|. ++++|.+..++
T Consensus 216 ~~--~~~~~~~g~~~~~c~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~-~~~~C~~~~~~ 292 (487)
T KOG1217|consen 216 DS--VACSCPPGARGPECEVSIVECASGDGTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCP-NGGTCVNVPGS 292 (487)
T ss_pred cc--eeccCCCCCCCCCcccccccccCCCCcccccCCceeeeCCCCccccccceeeeccccCCCCccC-CCCeeecCCCc
Confidence 10 001110 01111111111111 5688888 9999999999988622378999999872288 78999999999
Q ss_pred eeEecCCCCcccCC
Q 006839 542 YECTCSGDLLYIRD 555 (629)
Q Consensus 542 y~C~C~~G~~~~~~ 555 (629)
|.|.|++||.....
T Consensus 293 ~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 293 YRCTCPPGFTGRLC 306 (487)
T ss_pred ceeeCCCCCCCCCC
Confidence 99999999986553
No 37
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.04 E-value=1.1e-05 Score=73.08 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=66.3
Q ss_pred CCCCceeeEeccCCCcCCCC----CCCCCCCccccCCCCCCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCCCCc--
Q 006839 60 YGGSMAGAVTYPKENRKGCR----EFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEAL-- 133 (629)
Q Consensus 60 ~~~~~~g~l~~~~~~~~gC~----~~~~~~~~~~~~~~~~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~~~~-- 133 (629)
..+.++|.+||.. .|=. .+.. ..+++ |+|+|++.|.-.+..||+|||++||+|||||.|..+.-
T Consensus 11 ~sG~Vtg~~VYvN---yG~~eDf~~L~~-~V~v~------GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~ 80 (153)
T cd02131 11 AKGTLQAEVVDVQ---YGSVEDLRRIRD-NMNVT------NQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKT 80 (153)
T ss_pred CCCceEEEEEEec---CCCHHHHHHHHh-CCCcc------ceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCc
Confidence 3556899999852 1110 0111 12343 99999999999999999999999999999998753221
Q ss_pred -------ee-cCC-CCCc-ccc---------ccccCcccccEEEEeHHHHHHHHHHHc
Q 006839 134 -------IT-MDT-PEED-ISS---------AKYIENITIPSALIDKSFGETLKKALS 172 (629)
Q Consensus 134 -------~~-m~~-~~~~-~~~---------~~~~~~i~IP~~~I~~~~G~~l~~~l~ 172 (629)
.. +.. .+|. +.+ .....-.+||+.=||..|+..|+++-.
T Consensus 81 ~~~~~~v~~v~~~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 81 RHTWHQAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred CCCccceEEEecCCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCc
Confidence 00 111 1110 000 000123579999999999999987764
No 38
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=7.2e-06 Score=79.80 Aligned_cols=57 Identities=30% Similarity=0.743 Sum_probs=46.8
Q ss_pred eeeCCCcee-eCCCCcccCCccCCCCCCCCCCC-CCCCCCCCceeeCCCceeEecCCCCcc
Q 006839 494 CLDSENGKC-QCPPGFKGDGVKSCVDIDECKER-KACQCSECSCKDTWGSYECTCSGDLLY 552 (629)
Q Consensus 494 C~~~~~~~C-~C~~Gf~g~~~~~C~dideC~~~-~~C~~~~~~C~nt~Gsy~C~C~~G~~~ 552 (629)
|....+..| .|..||..+. ..|.|||||... .+|. .++.|+|+.|||.|.+++||..
T Consensus 211 Csg~~~k~C~kCkkGW~lde-~gCvDvnEC~~ep~~c~-~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 211 CSGESSKGCSKCKKGWKLDE-EGCVDVNECQNEPAPCK-AHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred cCCCCCCChhhhcccceecc-cccccHHHHhcCCCCCC-hhheeecCCCceEecccccccC
Confidence 443334455 5999999885 449999999877 7888 8899999999999999999964
No 39
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.97 E-value=3.1e-05 Score=85.55 Aligned_cols=149 Identities=27% Similarity=0.563 Sum_probs=107.3
Q ss_pred eeccccCCceeeeccCCCccCCCC-ccccCCCcccccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCeeEeCCCccc
Q 006839 387 YRGKLEKGAVLKAICSGFEETTEP-AVCLSGETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSH 465 (629)
Q Consensus 387 ~~c~~~~~~~~c~cc~Gf~~~~~~-~~C~~~d~deC~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~~~~dg~~~ 465 (629)
.+|....+.+.|.+..||.. .. ..|. ++++|..... |. +++.|.+..+.|.|.|++ ||. +.....
T Consensus 243 ~~c~~~~~~~~C~~~~g~~~--~~~~~~~--~~~~C~~~~~-c~-----~~~~C~~~~~~~~C~C~~--g~~--g~~~~~ 308 (487)
T KOG1217|consen 243 GTCVNTVGSYTCRCPEGYTG--DACVTCV--DVDSCALIAS-CP-----NGGTCVNVPGSYRCTCPP--GFT--GRLCTE 308 (487)
T ss_pred CcccccCCceeeeCCCCccc--cccceee--eccccCCCCc-cC-----CCCeeecCCCcceeeCCC--CCC--CCCCcc
Confidence 56778888899999999963 23 3577 8999988765 87 569999999999999999 554 333012
Q ss_pred cccCCCCcccC--CCCCCCCCCCCCCcccee--eeCC-CceeeCCCCcccCCccCCCCC-CCCCCCCCCCCCCCceee-C
Q 006839 466 CEVSGPGKCKI--NNGGCWHESKDGHTYSAC--LDSE-NGKCQCPPGFKGDGVKSCVDI-DECKERKACQCSECSCKD-T 538 (629)
Q Consensus 466 C~~~~~~~C~~--~~~~C~~~~~~~~~~~~C--~~~~-~~~C~C~~Gf~g~~~~~C~di-deC~~~~~C~~~~~~C~n-t 538 (629)
|.+. .+|.. ....|... +.| .+.. .+.|.|..||.|.. |++. ++|... +|. .++.|++ +
T Consensus 309 ~~~~--~~C~~~~~~~~c~~g-------~~C~~~~~~~~~~C~c~~~~~g~~---C~~~~~~C~~~-~~~-~~~~c~~~~ 374 (487)
T KOG1217|consen 309 CVDV--DECSPRNAGGPCANG-------GTCNTLGSFGGFRCACGPGFTGRR---CEDSNDECASS-PCC-PGGTCVNET 374 (487)
T ss_pred cccc--ccccccccCCcCCCC-------cccccCCCCCCCCcCCCCCCCCCc---cccCCccccCC-ccc-cCCEeccCC
Confidence 3333 56753 22345554 567 2333 78899999977766 9888 499987 666 7799999 7
Q ss_pred CCceeEecCCCCccc--CCCCcccccc
Q 006839 539 WGSYECTCSGDLLYI--RDHDTCISKT 563 (629)
Q Consensus 539 ~Gsy~C~C~~G~~~~--~~g~~C~~~~ 563 (629)
.++|.|.|+.+|.+. .++..|....
T Consensus 375 ~~~~~c~~~~~~~~~~~~~~~~~~~~~ 401 (487)
T KOG1217|consen 375 PGSYRCACPAGFAGKANGDGVGCEDID 401 (487)
T ss_pred CCCeEecCCCccccCCccccccccccc
Confidence 999999999999753 4555555443
No 40
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=97.97 E-value=4.2e-06 Score=77.59 Aligned_cols=138 Identities=25% Similarity=0.489 Sum_probs=84.9
Q ss_pred CceeeeccCCCccCCCCccccCCCcccccCC---CCCCCCCcCCCccccccCC-----CceeeeeCCCCCeeEeCCCccc
Q 006839 394 GAVLKAICSGFEETTEPAVCLSGETNECLDN---NGGCWQDKTANVTACKDTF-----RGRVCECPLVDGVQFKGDGYSH 465 (629)
Q Consensus 394 ~~~~c~cc~Gf~~~~~~~~C~~~d~deC~~~---~~~C~~~~~~~~~~C~n~~-----g~~~C~C~~~~G~~~~~dg~~~ 465 (629)
.-+.|.|-+||.+. ...+|+ ...+|... ...|. +++.|++.. ..|.|.|.+ ||.+..+-
T Consensus 18 NHfEC~Cnegfvl~-~EntCE--~kv~C~~~e~~~K~Cg-----dya~C~~~~~~~~~~~~~C~C~~--gY~~~~~v--- 84 (197)
T PF06247_consen 18 NHFECKCNEGFVLK-NENTCE--EKVECDKLENVNKPCG-----DYAKCINQANKGEERAYKCDCIN--GYILKQGV--- 84 (197)
T ss_dssp SEEEEEESTTEEEE-ETTEEE--E----SG-GGTTSEEE-----TTEEEEE-SSTTSSTSEEEEE-T--TEEESSSS---
T ss_pred CceEEEcCCCcEEc-cccccc--cceecCcccccCcccc-----chhhhhcCCCcccceeEEEeccc--CceeeCCe---
Confidence 44678888999864 666899 78888652 33576 779998875 679999999 99887654
Q ss_pred cccCCCCcccCCCCCCCCCCCCCCccceeeeCC----CceeeCCCCcccCCccCCC--CCCCCCCCCCCCCCCCceeeCC
Q 006839 466 CEVSGPGKCKINNGGCWHESKDGHTYSACLDSE----NGKCQCPPGFKGDGVKSCV--DIDECKERKACQCSECSCKDTW 539 (629)
Q Consensus 466 C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~~~~----~~~C~C~~Gf~g~~~~~C~--dideC~~~~~C~~~~~~C~nt~ 539 (629)
|.. ++|.. ..|.. +.|+-.+ ...|+|.-|+..+....|. .-.+|+. .|. .+..|..+.
T Consensus 85 Cvp---~~C~~--~~Cg~--------GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~L--KCk-~nE~CK~~~ 148 (197)
T PF06247_consen 85 CVP---NKCNN--KDCGS--------GKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCSL--KCK-ENEECKLVD 148 (197)
T ss_dssp EEE---GGGSS-----TT--------EEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE----------T-TTEEEEEET
T ss_pred Ech---hhcCc--eecCC--------CeEEecCCCCCCceeEeeeceEeccCCcccCCCccceee--ecC-CCcceeeeC
Confidence 764 46753 35653 6786433 5599999999944433475 3345665 476 778999999
Q ss_pred CceeEecCCCCcccCCCCccc
Q 006839 540 GSYECTCSGDLLYIRDHDTCI 560 (629)
Q Consensus 540 Gsy~C~C~~G~~~~~~g~~C~ 560 (629)
+=|+|.|.+|+.+...+..+.
T Consensus 149 ~~Y~C~~~~~~~~~~~~~~~~ 169 (197)
T PF06247_consen 149 GYYKCVCKEGFPGDGEGEGCG 169 (197)
T ss_dssp TEEEEEE-TT-EEETTT----
T ss_pred cEEEeecCCCCCCCCCccccc
Confidence 999999999998887776554
No 41
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=7.9e-06 Score=79.53 Aligned_cols=88 Identities=26% Similarity=0.668 Sum_probs=68.9
Q ss_pred CCceee-eeCCCCCeeEeCCCccccccCCCCcccCCCCCCCCCCCCCCccceeeeCC-CceeeCCCCcccCCccCCCCCC
Q 006839 443 FRGRVC-ECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDSE-NGKCQCPPGFKGDGVKSCVDID 520 (629)
Q Consensus 443 ~g~~~C-~C~~~~G~~~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~~~~-~~~C~C~~Gf~g~~~~~C~did 520 (629)
.++..| .|.. |+.+...+ |.|+ |||...+.+|... -.|+|+. +|.|.+++||.+. +|
T Consensus 214 ~~~k~C~kCkk--GW~lde~g---CvDv--nEC~~ep~~c~~~-------qfCvNteGSf~C~dk~Gy~~g-------~d 272 (350)
T KOG4260|consen 214 ESSKGCSKCKK--GWKLDEEG---CVDV--NECQNEPAPCKAH-------QFCVNTEGSFKCEDKEGYKKG-------VD 272 (350)
T ss_pred CCCCChhhhcc--cceecccc---cccH--HHHhcCCCCCChh-------heeecCCCceEecccccccCC-------hH
Confidence 344556 6888 77777555 9988 9999887788654 6799999 9999999999762 56
Q ss_pred CCCCC-CCCCCCCCceeeCCCceeEecCCCCc
Q 006839 521 ECKER-KACQCSECSCKDTWGSYECTCSGDLL 551 (629)
Q Consensus 521 eC~~~-~~C~~~~~~C~nt~Gsy~C~C~~G~~ 551 (629)
+|..- ..|...+..|.|+.|+|+|.|..|+.
T Consensus 273 ~C~~~~d~~~~kn~~c~ni~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 273 ECQFCADVCASKNRPCMNIDGQYRCVCFSGLI 304 (350)
T ss_pred HhhhhhhhcccCCCCcccCCccEEEEecccce
Confidence 66542 25654567899999999999999975
No 42
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.93 E-value=6.3e-06 Score=56.22 Aligned_cols=31 Identities=35% Similarity=0.778 Sum_probs=27.1
Q ss_pred CCCCCCCCceeeCCCceeEecCCCCcccCCCCcc
Q 006839 526 KACQCSECSCKDTWGSYECTCSGDLLYIRDHDTC 559 (629)
Q Consensus 526 ~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~~g~~C 559 (629)
+.|+ +.|+|++|+|+|.|++||.+..|+++|
T Consensus 6 GgC~---h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 6 GGCS---HICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp GGSS---SEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCcC---CCCccCCCceEeECCCCCEECcCCCCC
Confidence 5788 999999999999999999999999887
No 43
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.82 E-value=1.3e-05 Score=54.68 Aligned_cols=36 Identities=42% Similarity=0.919 Sum_probs=30.2
Q ss_pred ccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCeeEeCCCcccc
Q 006839 421 CLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHC 466 (629)
Q Consensus 421 C~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~~~~dg~~~C 466 (629)
|..++++|+ +.|++++++|+|.|++ ||.+..|+ ++|
T Consensus 1 C~~~NGgC~-------h~C~~~~g~~~C~C~~--Gy~L~~D~-~tC 36 (36)
T PF14670_consen 1 CSVNNGGCS-------HICVNTPGSYRCSCPP--GYKLAEDG-RTC 36 (36)
T ss_dssp CTTGGGGSS-------SEEEEETTSEEEE-ST--TEEE-TTS-SSE
T ss_pred CCCCCCCcC-------CCCccCCCceEeECCC--CCEECcCC-CCC
Confidence 455678898 8999999999999999 99999999 776
No 44
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.68 E-value=2.3e-05 Score=53.56 Aligned_cols=35 Identities=37% Similarity=0.818 Sum_probs=26.0
Q ss_pred CCCC-CCCCCCCCceeeCCCceeEecCCCCcccCCCCcc
Q 006839 522 CKER-KACQCSECSCKDTWGSYECTCSGDLLYIRDHDTC 559 (629)
Q Consensus 522 C~~~-~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~~g~~C 559 (629)
|..+ +.|+ .+++|+|+.++|.|.|++||. +||..|
T Consensus 1 C~~~~~~C~-~nA~C~~~~~~~~C~C~~Gy~--GdG~~C 36 (36)
T PF12947_consen 1 CLENNGGCH-PNATCTNTGGSYTCTCKPGYE--GDGFFC 36 (36)
T ss_dssp TTTGGGGS--TTCEEEE-TTSEEEEE-CEEE--CCSTCE
T ss_pred CCCCCCCCC-CCcEeecCCCCEEeECCCCCc--cCCcCC
Confidence 3444 6899 899999999999999999997 566655
No 45
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.64 E-value=6.1e-05 Score=52.43 Aligned_cols=38 Identities=42% Similarity=0.934 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCCCCCCceeeCCCceeEecCCCCcccCCCCcc
Q 006839 518 DIDECKERKACQCSECSCKDTWGSYECTCSGDLLYIRDHDTC 559 (629)
Q Consensus 518 dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~~g~~C 559 (629)
|+|||....+|. +++.|+|+.|+|.|.|++||. ++..|
T Consensus 1 d~~~C~~~~~C~-~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 1 DIDECASGNPCQ-NGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred CcccCcCCCCcC-CCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 578998733898 778999999999999999996 45555
No 46
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.50 E-value=7.2e-05 Score=45.86 Aligned_cols=23 Identities=48% Similarity=1.032 Sum_probs=18.9
Q ss_pred CceeeCCCCcccCC-ccCCCCCCC
Q 006839 499 NGKCQCPPGFKGDG-VKSCVDIDE 521 (629)
Q Consensus 499 ~~~C~C~~Gf~g~~-~~~C~dide 521 (629)
+|.|+|++||...+ .+.|+||||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 68999999999543 356999997
No 47
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.35 E-value=0.00016 Score=49.51 Aligned_cols=36 Identities=42% Similarity=1.002 Sum_probs=27.1
Q ss_pred ccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCeeEeCCCcccc
Q 006839 421 CLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHC 466 (629)
Q Consensus 421 C~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~~~~dg~~~C 466 (629)
|..++++|. .++.|+++.++|.|.|++ +|.||| ..|
T Consensus 1 C~~~~~~C~-----~nA~C~~~~~~~~C~C~~----Gy~GdG-~~C 36 (36)
T PF12947_consen 1 CLENNGGCH-----PNATCTNTGGSYTCTCKP----GYEGDG-FFC 36 (36)
T ss_dssp TTTGGGGS------TTCEEEE-TTSEEEEE-C----EEECCS-TCE
T ss_pred CCCCCCCCC-----CCcEeecCCCCEEeECCC----CCccCC-cCC
Confidence 556677898 559999999999999999 778888 544
No 48
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.27 E-value=0.00016 Score=44.40 Aligned_cols=22 Identities=41% Similarity=0.865 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCeeEeCCCccccccC
Q 006839 445 GRVCECPLVDGVQFKGDGYSHCEVS 469 (629)
Q Consensus 445 ~~~C~C~~~~G~~~~~dg~~~C~~~ 469 (629)
||+|+|++ ||.+..++ ++|+||
T Consensus 1 sy~C~C~~--Gy~l~~d~-~~C~DI 22 (24)
T PF12662_consen 1 SYTCSCPP--GYQLSPDG-RSCEDI 22 (24)
T ss_pred CEEeeCCC--CCcCCCCC-CccccC
Confidence 69999999 99999999 999988
No 49
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=97.26 E-value=5e-05 Score=79.26 Aligned_cols=126 Identities=18% Similarity=0.236 Sum_probs=86.1
Q ss_pred HHHhcCCceeEEEEEEEeccCcccccc---hhhhhhcccCCccCCCCC-CCCCCCC-CCcchhHHHHHHhhhhhhhcccC
Q 006839 225 QILEKGGYTQFTPHYITWYCPMTFTLS---RQCKSQCINHGRYCAPDP-EQDFSSG-YEGKDVVLENLRQLCVFKVAKES 299 (629)
Q Consensus 225 ~~~~~~~~~~f~p~~~~~~c~~~~~~~---~~~~~~ci~~Gryc~~dp-~~~~~~~-~~g~dvv~e~lrq~c~~~~~~~~ 299 (629)
..| +|||+||..++++.+-.+..... ......=...|+.+++.| +++++.+ ++.+++....+ ...+
T Consensus 217 ~~m-GEGWsD~~Al~~~~~~~d~~~~~~~~G~y~~~~~~~g~GIR~~pYSt~~~~Np~tY~~i~~~~~--------~~~H 287 (378)
T PF02128_consen 217 GGM-GEGWSDFFALMMTMKPGDTRDTDYGIGTYVTGNPTDGAGIRRYPYSTDMTVNPLTYGDIGRDGV--------SEVH 287 (378)
T ss_pred CCC-cccHHHHHHHHheecccccCCCCceeeeeecCCcccccccccccccCCcCCCCCcHhhhccCcc--------cccc
Confidence 345 48999999999988754321110 011111123567888888 5676644 55555511111 1124
Q ss_pred CCCcch--------hhhHHHHhhhCCCCcccchHHHHHHHHHHcCCChhhhccccCCC-CCCCCChhhHHHHHhh
Q 006839 300 KKPWVW--------WDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIEKCMGDP-DADADNPVLKEEQDAQ 365 (629)
Q Consensus 300 ~~~~~w--------w~Y~~~f~~~C~~~~~~~~~~C~~~v~~~~~ld~~~i~~C~~d~-~~d~~n~iL~~~~~~q 365 (629)
.++.+| |.+|+++++.- ..|+.+.++.++++|.+|+.+++.| +| +.+.++.||.++....
T Consensus 288 ~~GeVWA~~Lwe~~~~Lv~~~G~~~----~~~~~~~Gn~~~~~lv~dgmklqPc--nPtf~daRDAIl~Ad~~~~ 356 (378)
T PF02128_consen 288 AIGEVWATMLWEVYWALVDKHGFSP----DLYNGTGGNNRAMQLVVDGMKLQPC--NPTFVDARDAILQADQALY 356 (378)
T ss_pred cCcchHHHHHHHHHHHHHHHhCCCC----cccccccHHHHHHHHHHHHHhcCCC--CCChHHHHHHHHHHHHHHh
Confidence 677788 88999999864 4666677999999999999999999 55 8999999999988754
No 50
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=96.87 E-value=0.0013 Score=45.05 Aligned_cols=33 Identities=42% Similarity=0.941 Sum_probs=27.9
Q ss_pred CCCCCCCCCCCCCCCCceeeCCCceeEecCCCCc
Q 006839 518 DIDECKERKACQCSECSCKDTWGSYECTCSGDLL 551 (629)
Q Consensus 518 dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~ 551 (629)
++|+|....+|. +++.|.++.++|.|.|++||.
T Consensus 1 ~~~~C~~~~~C~-~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 1 DIDECASGNPCQ-NGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred CcccCCCCCCcC-CCCEeECCCCCeEeECCCCCc
Confidence 467887623787 778999999999999999997
No 51
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.70 E-value=0.0013 Score=65.46 Aligned_cols=40 Identities=35% Similarity=0.698 Sum_probs=34.6
Q ss_pred CCCCCCCCCCC-CCCCCCCCceeeCCCceeEecCCCCcccCCCC
Q 006839 515 SCVDIDECKER-KACQCSECSCKDTWGSYECTCSGDLLYIRDHD 557 (629)
Q Consensus 515 ~C~dideC~~~-~~C~~~~~~C~nt~Gsy~C~C~~G~~~~~~g~ 557 (629)
.|.+++||... +.|. +.|.|+.|+|.|.|++||++..++.
T Consensus 183 ~C~~~~~C~~~~~~c~---~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 183 ICVVPDLCATLSHVCQ---QVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred cCcCchhhcCCCCCcc---ceEEcCCCCEEeECCCCccCCCCCC
Confidence 38889999876 6787 7999999999999999999877764
No 52
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=96.58 E-value=0.0021 Score=44.45 Aligned_cols=33 Identities=33% Similarity=0.751 Sum_probs=26.3
Q ss_pred CcccccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCee
Q 006839 417 ETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQ 457 (629)
Q Consensus 417 d~deC~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~ 457 (629)
++|+|... .+|. +++.|+++.|+|.|.|++ ||.
T Consensus 1 d~~~C~~~-~~C~-----~~~~C~~~~g~~~C~C~~--g~~ 33 (39)
T smart00179 1 DIDECASG-NPCQ-----NGGTCVNTVGSYRCECPP--GYT 33 (39)
T ss_pred CcccCcCC-CCcC-----CCCEeECCCCCeEeECCC--CCc
Confidence 46888763 4587 457999999999999999 664
No 53
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=96.57 E-value=0.0013 Score=43.72 Aligned_cols=29 Identities=31% Similarity=0.749 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCceeeCC-CceeEecCCCCcc
Q 006839 522 CKERKACQCSECSCKDTW-GSYECTCSGDLLY 552 (629)
Q Consensus 522 C~~~~~C~~~~~~C~nt~-Gsy~C~C~~G~~~ 552 (629)
|.++ +|. ++++|++.. ++|.|.|++||.+
T Consensus 1 C~~~-~C~-n~g~C~~~~~~~y~C~C~~G~~G 30 (32)
T PF00008_consen 1 CSSN-PCQ-NGGTCIDLPGGGYTCECPPGYTG 30 (32)
T ss_dssp TTTT-SST-TTEEEEEESTSEEEEEEBTTEES
T ss_pred CCCC-cCC-CCeEEEeCCCCCEEeECCCCCcc
Confidence 4444 898 889999999 9999999999974
No 54
>smart00181 EGF Epidermal growth factor-like domain.
Probab=95.86 E-value=0.011 Score=39.87 Aligned_cols=30 Identities=30% Similarity=0.697 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCceeeCCCceeEecCCCCccc
Q 006839 522 CKERKACQCSECSCKDTWGSYECTCSGDLLYI 553 (629)
Q Consensus 522 C~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~~ 553 (629)
|..+.+|. ++ .|+++.++|.|.|++||.++
T Consensus 2 C~~~~~C~-~~-~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 2 CASGGPCS-NG-TCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCcCCCC-CC-EEECCCCCeEeECCCCCccC
Confidence 44413788 55 99999999999999999753
No 55
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=95.73 E-value=0.014 Score=39.13 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=22.8
Q ss_pred CCCCCCCceeeCCCceeEecCCCCccc
Q 006839 527 ACQCSECSCKDTWGSYECTCSGDLLYI 553 (629)
Q Consensus 527 ~C~~~~~~C~nt~Gsy~C~C~~G~~~~ 553 (629)
+|. +++.|+++.++|.|.|+.||.+.
T Consensus 7 ~C~-~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 7 PCS-NGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCC-CCCEEecCCCCeEeECCCCCccc
Confidence 777 77999999999999999999743
No 56
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=95.50 E-value=0.009 Score=59.38 Aligned_cols=43 Identities=21% Similarity=0.496 Sum_probs=37.4
Q ss_pred CCccccCCCcccccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCeeEeCCC
Q 006839 409 EPAVCLSGETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDG 462 (629)
Q Consensus 409 ~~~~C~~~d~deC~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~~~~dg 462 (629)
.+..|. +.++|...++.|. ..|.++.|+|.|.|++ ||.+..++
T Consensus 180 ~~~~C~--~~~~C~~~~~~c~-------~~C~~~~g~~~c~c~~--g~~~~~~~ 222 (224)
T cd01475 180 QGKICV--VPDLCATLSHVCQ-------QVCISTPGSYLCACTE--GYALLEDN 222 (224)
T ss_pred ccccCc--CchhhcCCCCCcc-------ceEEcCCCCEEeECCC--CccCCCCC
Confidence 566788 8999998888898 7899999999999999 88877666
No 57
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=95.07 E-value=0.034 Score=48.55 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=28.3
Q ss_pred CCCCCCCC--CCCCCCCCceeeCC--CceeEecCCCCcccCCCCccccc
Q 006839 518 DIDECKER--KACQCSECSCKDTW--GSYECTCSGDLLYIRDHDTCISK 562 (629)
Q Consensus 518 dideC~~~--~~C~~~~~~C~nt~--Gsy~C~C~~G~~~~~~g~~C~~~ 562 (629)
++.+|.+. +-|- + +.|.-.. ..+.|.|..||. |..|+..
T Consensus 41 ~i~~Cp~ey~~YCl-H-G~C~yI~dl~~~~CrC~~GYt----GeRCEh~ 83 (139)
T PHA03099 41 AIRLCGPEGDGYCL-H-GDCIHARDIDGMYCRCSHGYT----GIRCQHV 83 (139)
T ss_pred ccccCChhhCCEeE-C-CEEEeeccCCCceeECCCCcc----cccccce
Confidence 56667655 5676 4 5897554 889999999998 6677643
No 58
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=94.77 E-value=0.072 Score=58.70 Aligned_cols=98 Identities=28% Similarity=0.716 Sum_probs=60.5
Q ss_pred eeeccCCCccCCCCccccCCCcccccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCeeEeCCCccccccCCCCcccC
Q 006839 397 LKAICSGFEETTEPAVCLSGETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKI 476 (629)
Q Consensus 397 ~c~cc~Gf~~~~~~~~C~~~d~deC~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~~~~dg~~~C~~~~~~~C~~ 476 (629)
+|.|.+|| .+..|. + --|. ..|. .++.|++. .|.|++ ||. | +.|... +|.
T Consensus 266 ~CIC~~Gf----~G~dC~--e-~~Cp---~~cs-----~~g~~~~g----~CiC~~--g~~----G-~dCs~~---~cp- 315 (525)
T KOG1225|consen 266 RCICPPGF----TGDDCD--E-LVCP---VDCS-----GGGVCVDG----ECICNP--GYS----G-KDCSIR---RCP- 315 (525)
T ss_pred eEeCCCCC----cCCCCC--c-ccCC---cccC-----CCceecCC----EeecCC--Ccc----c-cccccc---cCC-
Confidence 57788999 566565 2 2242 1254 33555443 899999 554 4 557643 343
Q ss_pred CCCCCCCCCCCCCccceeeeCCCceeeCCCCcccCCccCCCCCCCCCCCCCCCCCCCceeeCCCceeEecCCCCcc
Q 006839 477 NNGGCWHESKDGHTYSACLDSENGKCQCPPGFKGDGVKSCVDIDECKERKACQCSECSCKDTWGSYECTCSGDLLY 552 (629)
Q Consensus 477 ~~~~C~~~~~~~~~~~~C~~~~~~~C~C~~Gf~g~~~~~C~dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~ 552 (629)
..|... +.|+ .-.|.|.+||+|.. |.-.+ |+ ..+.|+| | |.|..||.+
T Consensus 316 --adC~g~-------G~Ci---~G~C~C~~Gy~G~~---C~~~~-------C~-~~g~cv~--g---C~C~~Gw~G 363 (525)
T KOG1225|consen 316 --ADCSGH-------GKCI---DGECLCDEGYTGEL---CIQRA-------CS-GGGQCVN--G---CKCKKGWRG 363 (525)
T ss_pred --ccCCCC-------Cccc---CCceEeCCCCcCCc---ccccc-------cC-CCceecc--C---ceeccCccC
Confidence 244443 6676 34799999999987 65442 44 4466665 2 889999874
No 59
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=94.53 E-value=0.026 Score=52.85 Aligned_cols=97 Identities=22% Similarity=0.482 Sum_probs=61.5
Q ss_pred cccccCCCceeeeeCCCCCeeEeCCCccccccCCCCcccC---CCCCCCCCCCCCCccceeeeCC------CceeeCCCC
Q 006839 437 TACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKI---NNGGCWHESKDGHTYSACLDSE------NGKCQCPPG 507 (629)
Q Consensus 437 ~~C~n~~g~~~C~C~~~~G~~~~~dg~~~C~~~~~~~C~~---~~~~C~~~~~~~~~~~~C~~~~------~~~C~C~~G 507 (629)
+..+...+.|+|.|.+ ||.+... .+|+.. .+|.. .+.+|... +.|.+.+ .|.|.|.+|
T Consensus 11 G~LiQMSNHfEC~Cne--gfvl~~E--ntCE~k--v~C~~~e~~~K~Cgdy-------a~C~~~~~~~~~~~~~C~C~~g 77 (197)
T PF06247_consen 11 GYLIQMSNHFECKCNE--GFVLKNE--NTCEEK--VECDKLENVNKPCGDY-------AKCINQANKGEERAYKCDCING 77 (197)
T ss_dssp EEEEEESSEEEEEEST--TEEEEET--TEEEE------SG-GGTTSEEETT-------EEEEE-SSTTSSTSEEEEE-TT
T ss_pred CEEEEccCceEEEcCC--CcEEccc--cccccc--eecCcccccCccccch-------hhhhcCCCcccceeEEEecccC
Confidence 4455557889999999 9998854 579987 67865 23457665 8897643 689999999
Q ss_pred cccCCccCCCCCCCCCCCCCCCCCCCceeeCC---CceeEecCCCCc
Q 006839 508 FKGDGVKSCVDIDECKERKACQCSECSCKDTW---GSYECTCSGDLL 551 (629)
Q Consensus 508 f~g~~~~~C~dideC~~~~~C~~~~~~C~nt~---Gsy~C~C~~G~~ 551 (629)
|...... |. .++|... .|. .+.|+-.+ ....|+|.-|+.
T Consensus 78 Y~~~~~v-Cv-p~~C~~~-~Cg--~GKCI~d~~~~~~~~CSC~IGkV 119 (197)
T PF06247_consen 78 YILKQGV-CV-PNKCNNK-DCG--SGKCILDPDNPNNPTCSCNIGKV 119 (197)
T ss_dssp EEESSSS-EE-EGGGSS----T--TEEEEEEEGGGSEEEEEE-TEEE
T ss_pred ceeeCCe-Ec-hhhcCce-ecC--CCeEEecCCCCCCceeEeeeceE
Confidence 9976532 43 2345554 565 57887433 345999999997
No 60
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=94.51 E-value=0.039 Score=37.49 Aligned_cols=33 Identities=30% Similarity=0.716 Sum_probs=25.1
Q ss_pred CcccccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCee
Q 006839 417 ETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQ 457 (629)
Q Consensus 417 d~deC~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~ 457 (629)
++|+|... .+|. +++.|.++.++|.|.|++ ||.
T Consensus 1 ~~~~C~~~-~~C~-----~~~~C~~~~~~~~C~C~~--g~~ 33 (38)
T cd00054 1 DIDECASG-NPCQ-----NGGTCVNTVGSYRCSCPP--GYT 33 (38)
T ss_pred CcccCCCC-CCcC-----CCCEeECCCCCeEeECCC--CCc
Confidence 35778652 3486 558999999999999999 553
No 61
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=94.46 E-value=0.029 Score=37.29 Aligned_cols=20 Identities=45% Similarity=0.836 Sum_probs=18.0
Q ss_pred CccccccCC-CceeeeeCCCCCe
Q 006839 435 NVTACKDTF-RGRVCECPLVDGV 456 (629)
Q Consensus 435 ~~~~C~n~~-g~~~C~C~~~~G~ 456 (629)
+++.|++.. ++|.|.|++ ||
T Consensus 8 n~g~C~~~~~~~y~C~C~~--G~ 28 (32)
T PF00008_consen 8 NGGTCIDLPGGGYTCECPP--GY 28 (32)
T ss_dssp TTEEEEEESTSEEEEEEBT--TE
T ss_pred CCeEEEeCCCCCEEeECCC--CC
Confidence 779999998 999999999 54
No 62
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=94.30 E-value=0.14 Score=56.40 Aligned_cols=79 Identities=29% Similarity=0.820 Sum_probs=50.1
Q ss_pred cccccCCCceeeeeCCCCCeeEeCCCccccccCCCCcccCCCCCCCCCCCCCCccceeeeCCCceeeCCCCcccCCccCC
Q 006839 437 TACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDSENGKCQCPPGFKGDGVKSC 516 (629)
Q Consensus 437 ~~C~n~~g~~~C~C~~~~G~~~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~~~~~~~C~C~~Gf~g~~~~~C 516 (629)
+.|++. +|.|++ || .| ..|... .|.. .|+.. ..|++ + .|.|++||.|.. |
T Consensus 260 g~c~~G----~CIC~~--Gf--~G---~dC~e~---~Cp~---~cs~~-------g~~~~--g-~CiC~~g~~G~d---C 309 (525)
T KOG1225|consen 260 GQCVEG----RCICPP--GF--TG---DDCDEL---VCPV---DCSGG-------GVCVD--G-ECICNPGYSGKD---C 309 (525)
T ss_pred ceEeCC----eEeCCC--CC--cC---CCCCcc---cCCc---ccCCC-------ceecC--C-EeecCCCccccc---c
Confidence 556543 699999 54 44 347542 3432 14332 33433 2 899999999987 6
Q ss_pred CCCCCCCCCCCCCCCCCceeeCCCceeEecCCCCccc
Q 006839 517 VDIDECKERKACQCSECSCKDTWGSYECTCSGDLLYI 553 (629)
Q Consensus 517 ~dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~~ 553 (629)
+. -+|.. .|+ .++.|+ .-+|.|.+||++.
T Consensus 310 s~-~~cpa--dC~-g~G~Ci----~G~C~C~~Gy~G~ 338 (525)
T KOG1225|consen 310 SI-RRCPA--DCS-GHGKCI----DGECLCDEGYTGE 338 (525)
T ss_pred cc-ccCCc--cCC-CCCccc----CCceEeCCCCcCC
Confidence 42 23543 588 788998 2379999999744
No 63
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.29 E-value=0.064 Score=49.91 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=29.3
Q ss_pred CcEEEEeCCCcCHH-------------------HHHHHHHHcCCcEEEEEECCC
Q 006839 96 PNFVLVDRGDCFFA-------------------LKVWNAQKAGASAVLVADDIE 130 (629)
Q Consensus 96 ~~i~Lv~RG~C~F~-------------------~K~~nAq~aGA~avII~n~~~ 130 (629)
||||||.+|+=.|. .|...|+++||+|||++++..
T Consensus 50 GKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 50 GKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred CcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 89999998865443 499999999999999998753
No 64
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.01 E-value=0.15 Score=59.36 Aligned_cols=59 Identities=27% Similarity=0.607 Sum_probs=38.1
Q ss_pred Ccee-eCCCCcccCCc-cCCC---CCCCCCCC-CCCCCCCCceeeCCCceeE-ecCCCCccc---CCCCcccc
Q 006839 499 NGKC-QCPPGFKGDGV-KSCV---DIDECKER-KACQCSECSCKDTWGSYEC-TCSGDLLYI---RDHDTCIS 561 (629)
Q Consensus 499 ~~~C-~C~~Gf~g~~~-~~C~---dideC~~~-~~C~~~~~~C~nt~Gsy~C-~C~~G~~~~---~~g~~C~~ 561 (629)
+..| +|.+||.|-+. +.|+ --|+|.+. +.|- .|...-+++.| +|..||.++ +.|..|++
T Consensus 840 grqCnqCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi----~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrP 908 (1758)
T KOG0994|consen 840 GRQCNQCQPGYWGFPECRPCQCNGHADTCDPITGACI----DCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRP 908 (1758)
T ss_pred hhhccccCCCccCCCcCccccccCcccccCccccccc----cccccccccchhhhhccccCCcccCCCCCCCC
Confidence 5566 58888887762 3343 23455544 4443 46666778888 599999876 45667776
No 65
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=92.74 E-value=0.16 Score=33.69 Aligned_cols=20 Identities=40% Similarity=1.280 Sum_probs=18.4
Q ss_pred ceeeeCC-CceeeCCCCcccC
Q 006839 492 SACLDSE-NGKCQCPPGFKGD 511 (629)
Q Consensus 492 ~~C~~~~-~~~C~C~~Gf~g~ 511 (629)
+.|++.. +|.|.|+.||.++
T Consensus 12 ~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 12 GTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CEEecCCCCeEeECCCCCccc
Confidence 7799988 9999999999987
No 66
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=92.03 E-value=0.086 Score=35.91 Aligned_cols=30 Identities=27% Similarity=0.573 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCCceeeCC-CceeEecCCCCccc
Q 006839 522 CKERKACQCSECSCKDTW-GSYECTCSGDLLYI 553 (629)
Q Consensus 522 C~~~~~C~~~~~~C~nt~-Gsy~C~C~~G~~~~ 553 (629)
|... .|. .++.|.+.. |++.|+|..||...
T Consensus 2 C~~~-~cP-~NA~C~~~~dG~eecrCllgyk~~ 32 (37)
T PF12946_consen 2 CIDT-KCP-ANAGCFRYDDGSEECRCLLGYKKV 32 (37)
T ss_dssp -SSS-----TTEEEEEETTSEEEEEE-TTEEEE
T ss_pred ccCc-cCC-CCcccEEcCCCCEEEEeeCCcccc
Confidence 4443 677 789999887 99999999999854
No 67
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=91.13 E-value=0.31 Score=55.93 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=32.6
Q ss_pred CCcEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECC
Q 006839 95 LPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDI 129 (629)
Q Consensus 95 ~~~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~ 129 (629)
.++|+|++=|.=.+..|+.||+++||.+||||.+.
T Consensus 184 ~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 184 SGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred cCceEEEEccccchhhhHhhHHHhhcCcEEEeecc
Confidence 38999999999999999999999999999999764
No 68
>smart00181 EGF Epidermal growth factor-like domain.
Probab=88.43 E-value=0.4 Score=32.04 Aligned_cols=28 Identities=36% Similarity=0.802 Sum_probs=21.1
Q ss_pred ccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCee
Q 006839 421 CLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQ 457 (629)
Q Consensus 421 C~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~ 457 (629)
|... .+|. ++ .|.++.++|.|.|++ ||.
T Consensus 2 C~~~-~~C~-----~~-~C~~~~~~~~C~C~~--g~~ 29 (35)
T smart00181 2 CASG-GPCS-----NG-TCINTPGSYTCSCPP--GYT 29 (35)
T ss_pred CCCc-CCCC-----CC-EEECCCCCeEeECCC--CCc
Confidence 4443 4476 44 899999999999999 654
No 69
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=88.39 E-value=1.9 Score=49.07 Aligned_cols=24 Identities=38% Similarity=1.205 Sum_probs=16.6
Q ss_pred ceeeCCCCcccCCccCC-CCCCCCCC
Q 006839 500 GKCQCPPGFKGDGVKSC-VDIDECKE 524 (629)
Q Consensus 500 ~~C~C~~Gf~g~~~~~C-~dideC~~ 524 (629)
-+|.|.+||+|..-. | .+.|-|.+
T Consensus 566 G~CvC~~GwtG~~C~-C~~std~C~~ 590 (783)
T KOG1226|consen 566 GRCVCNPGWTGSACN-CPLSTDTCES 590 (783)
T ss_pred CcEEcCCCCccCCCC-CCCCCccccC
Confidence 379999999998732 2 25566654
No 70
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=86.54 E-value=0.67 Score=39.59 Aligned_cols=45 Identities=20% Similarity=0.596 Sum_probs=30.6
Q ss_pred CCCCCCC-CCCCCCCCceeeCC-----CceeEecCCCCccc---------CCCCccccccc
Q 006839 519 IDECKER-KACQCSECSCKDTW-----GSYECTCSGDLLYI---------RDHDTCISKTA 564 (629)
Q Consensus 519 ideC~~~-~~C~~~~~~C~nt~-----Gsy~C~C~~G~~~~---------~~g~~C~~~~~ 564 (629)
.++|... +.|. .++.|++.. .=|.|.|.+..... .-|..|.-++.
T Consensus 5 ~~aC~~~Tn~Cs-gHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkDv 64 (103)
T PF12955_consen 5 NDACENATNNCS-GHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKDV 64 (103)
T ss_pred HHHHHHhccCCC-CCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccccc
Confidence 3556655 6788 789998873 44899999865332 34667877664
No 71
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=85.96 E-value=0.36 Score=25.12 Aligned_cols=12 Identities=58% Similarity=1.597 Sum_probs=9.3
Q ss_pred eeeCCCCcccCC
Q 006839 501 KCQCPPGFKGDG 512 (629)
Q Consensus 501 ~C~C~~Gf~g~~ 512 (629)
.|.|++||.|..
T Consensus 1 ~C~C~~G~~G~~ 12 (13)
T PF12661_consen 1 TCQCPPGWTGPN 12 (13)
T ss_dssp EEEE-TTEETTT
T ss_pred CccCcCCCcCCC
Confidence 489999999875
No 72
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.89 E-value=1.8 Score=51.05 Aligned_cols=94 Identities=24% Similarity=0.563 Sum_probs=47.5
Q ss_pred cCCCccCCCCccccCC-CcccccCCCCCCCCCcCCCccccccCCCceee-eeCCCCCeeEeCCCccccccCCCCcccCCC
Q 006839 401 CSGFEETTEPAVCLSG-ETNECLDNNGGCWQDKTANVTACKDTFRGRVC-ECPLVDGVQFKGDGYSHCEVSGPGKCKINN 478 (629)
Q Consensus 401 c~Gf~~~~~~~~C~~~-d~deC~~~~~~C~~~~~~~~~~C~n~~g~~~C-~C~~~~G~~~~~dg~~~C~~~~~~~C~~~~ 478 (629)
-+||.--+.=+.|.=+ -.|+|.+..+.|- .|.+...++.| .|.. | |-||. +.=.. ..|. +
T Consensus 847 qpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi--------~CqD~T~G~~CdrCl~--G--yyGdP-~lg~g---~~Cr--P 908 (1758)
T KOG0994|consen 847 QPGYWGFPECRPCQCNGHADTCDPITGACI--------DCQDSTTGHSCDRCLD--G--YYGDP-RLGSG---IGCR--P 908 (1758)
T ss_pred CCCccCCCcCccccccCcccccCccccccc--------cccccccccchhhhhc--c--ccCCc-ccCCC---CCCC--C
Confidence 3676532222233211 4567766666663 67888889999 7988 4 44543 21111 1232 1
Q ss_pred CCCCCCCCCCCcc-ceee-eCC--CceeeCCCCcccCC
Q 006839 479 GGCWHESKDGHTY-SACL-DSE--NGKCQCPPGFKGDG 512 (629)
Q Consensus 479 ~~C~~~~~~~~~~-~~C~-~~~--~~~C~C~~Gf~g~~ 512 (629)
-+|...+..+..+ ..|. ++. ...|.|.+||.|..
T Consensus 909 CpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~R 946 (1758)
T KOG0994|consen 909 CPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSR 946 (1758)
T ss_pred CCCCCCCccchhccccccccccccceeeecccCccccc
Confidence 1232222112111 2343 222 67799999998654
No 73
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=79.17 E-value=2.8 Score=27.83 Aligned_cols=22 Identities=18% Similarity=0.619 Sum_probs=18.2
Q ss_pred CCCCCCCceeeCCCceeEecCCCCc
Q 006839 527 ACQCSECSCKDTWGSYECTCSGDLL 551 (629)
Q Consensus 527 ~C~~~~~~C~nt~Gsy~C~C~~G~~ 551 (629)
.|. .+++|++. ..+|.|.+||.
T Consensus 7 ~C~-~~G~C~~~--~g~C~C~~g~~ 28 (32)
T PF07974_consen 7 ICS-GHGTCVSP--CGRCVCDSGYT 28 (32)
T ss_pred ccC-CCCEEeCC--CCEEECCCCCc
Confidence 577 77899876 56999999997
No 74
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=77.07 E-value=2 Score=29.40 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=19.9
Q ss_pred CccccccCC-CceeeeeCCCCCeeEeCC
Q 006839 435 NVTACKDTF-RGRVCECPLVDGVQFKGD 461 (629)
Q Consensus 435 ~~~~C~n~~-g~~~C~C~~~~G~~~~~d 461 (629)
.++.|.+.. |+++|.|.. ||...++
T Consensus 9 ~NA~C~~~~dG~eecrCll--gyk~~~~ 34 (37)
T PF12946_consen 9 ANAGCFRYDDGSEECRCLL--GYKKVGG 34 (37)
T ss_dssp TTEEEEEETTSEEEEEE-T--TEEEETT
T ss_pred CCcccEEcCCCCEEEEeeC--CccccCC
Confidence 459999986 999999999 8887654
No 75
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=70.98 E-value=3.7 Score=27.43 Aligned_cols=24 Identities=17% Similarity=0.539 Sum_probs=16.3
Q ss_pred CCCCCCCceeeCCCceeEecCCCCcccC
Q 006839 527 ACQCSECSCKDTWGSYECTCSGDLLYIR 554 (629)
Q Consensus 527 ~C~~~~~~C~nt~Gsy~C~C~~G~~~~~ 554 (629)
.|. +.|.... .+.|.|++||++..
T Consensus 7 ~Cp---A~CDpn~-~~~C~CPeGyIlde 30 (34)
T PF09064_consen 7 ECP---ADCDPNS-PGQCFCPEGYILDE 30 (34)
T ss_pred cCC---CccCCCC-CCceeCCCceEecC
Confidence 566 6675422 23899999998754
No 76
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=66.86 E-value=9.5 Score=25.28 Aligned_cols=20 Identities=30% Similarity=1.027 Sum_probs=15.5
Q ss_pred ceeeeCCCceeeCCCCcccCC
Q 006839 492 SACLDSENGKCQCPPGFKGDG 512 (629)
Q Consensus 492 ~~C~~~~~~~C~C~~Gf~g~~ 512 (629)
++|... ...|.|.+||.|..
T Consensus 12 G~C~~~-~g~C~C~~g~~G~~ 31 (32)
T PF07974_consen 12 GTCVSP-CGRCVCDSGYTGPD 31 (32)
T ss_pred CEEeCC-CCEEECCCCCcCCC
Confidence 667544 46899999999864
No 77
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=65.27 E-value=6.1 Score=26.40 Aligned_cols=20 Identities=35% Similarity=0.806 Sum_probs=14.4
Q ss_pred eeeCCCceeeCCCCcccCCc
Q 006839 494 CLDSENGKCQCPPGFKGDGV 513 (629)
Q Consensus 494 C~~~~~~~C~C~~Gf~g~~~ 513 (629)
|.......|.||.||..+..
T Consensus 12 CDpn~~~~C~CPeGyIlde~ 31 (34)
T PF09064_consen 12 CDPNSPGQCFCPEGYILDEG 31 (34)
T ss_pred cCCCCCCceeCCCceEecCC
Confidence 54333568999999997753
No 78
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=62.96 E-value=12 Score=27.63 Aligned_cols=26 Identities=19% Similarity=0.658 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCceeeCCCceeEecCCCCcc
Q 006839 522 CKERKACQCSECSCKDTWGSYECTCSGDLLY 552 (629)
Q Consensus 522 C~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~ 552 (629)
|.....|. .++.|++ -+|.|++||..
T Consensus 22 C~~~~qC~-~~s~C~~----g~C~C~~g~~~ 47 (52)
T PF01683_consen 22 CESDEQCI-GGSVCVN----GRCQCPPGYVE 47 (52)
T ss_pred CCCcCCCC-CcCEEcC----CEeECCCCCEe
Confidence 43333455 5577755 38999999864
No 79
>PHA02887 EGF-like protein; Provisional
Probab=62.66 E-value=6.8 Score=34.03 Aligned_cols=25 Identities=24% Similarity=0.753 Sum_probs=19.5
Q ss_pred ceeeeCC---CceeeCCCCcccCCccCCCCC
Q 006839 492 SACLDSE---NGKCQCPPGFKGDGVKSCVDI 519 (629)
Q Consensus 492 ~~C~~~~---~~~C~C~~Gf~g~~~~~C~di 519 (629)
++|.... .+.|.|++||.|.. |+.+
T Consensus 97 G~C~yI~dL~epsCrC~~GYtG~R---CE~v 124 (126)
T PHA02887 97 GECMNIIDLDEKFCICNKGYTGIR---CDEV 124 (126)
T ss_pred CEEEccccCCCceeECCCCcccCC---CCcc
Confidence 5686554 78999999999987 7644
No 80
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=62.43 E-value=5.7 Score=33.72 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=9.6
Q ss_pred ecCCCCcccCCCCcccc
Q 006839 545 TCSGDLLYIRDHDTCIS 561 (629)
Q Consensus 545 ~C~~G~~~~~~g~~C~~ 561 (629)
.|..||.+. +..|..
T Consensus 41 ~C~~GY~~~--~~~Cv~ 55 (96)
T PTZ00382 41 ECNSGFSLD--NGKCVS 55 (96)
T ss_pred cCcCCcccC--CCcccc
Confidence 488888764 445644
No 81
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=61.90 E-value=52 Score=37.95 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHcC
Q 006839 161 KSFGETLKKALSG 173 (629)
Q Consensus 161 ~~~G~~l~~~l~~ 173 (629)
++-|..|...|++
T Consensus 153 ~~LG~~L~~~m~~ 165 (783)
T KOG1226|consen 153 KSLGTDLAREMRK 165 (783)
T ss_pred HHHHHHHHHHHHH
Confidence 4667777777763
No 82
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=61.01 E-value=5.4 Score=33.80 Aligned_cols=26 Identities=31% Similarity=0.161 Sum_probs=12.8
Q ss_pred CCCCcchhHHHHHHHHHHHhhhcccceE
Q 006839 1 MESHGSITLKLFLGFLILSLNVHTSVSR 28 (629)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~~~~~~~a~ 28 (629)
|++.. .|+|+|+|+++|+.++.++|+
T Consensus 1 MaSK~--~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 1 MASKA--FLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred CchhH--HHHHHHHHHHHHHHHhhhhhH
Confidence 66332 345555555555555555543
No 83
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=60.96 E-value=7.5 Score=33.73 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCCCCCCceeeCCCceeEecCCCCcc
Q 006839 518 DIDECKERKACQCSECSCKDTWGSYECTCSGDLLY 552 (629)
Q Consensus 518 dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~~ 552 (629)
..|+|...+.|. +.+.|. ...+..|.|.+||..
T Consensus 76 p~d~Cd~y~~CG-~~g~C~-~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 76 PKDQCDVYGFCG-PNGICN-SNNSPKCSCLPGFEP 108 (110)
T ss_pred cccCCCCccccC-CccEeC-CCCCCceECCCCcCC
Confidence 456787766898 889994 445667999999973
No 84
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=56.93 E-value=3.1 Score=36.59 Aligned_cols=11 Identities=36% Similarity=0.350 Sum_probs=5.0
Q ss_pred ceeeCCCceeE
Q 006839 534 SCKDTWGSYEC 544 (629)
Q Consensus 534 ~C~nt~Gsy~C 544 (629)
.|...+.+..|
T Consensus 54 sC~~~P~S~~C 64 (129)
T PF12191_consen 54 SCPAYPKSPFC 64 (129)
T ss_dssp CHCC-TT-CCC
T ss_pred cCCCCCCCccc
Confidence 55555555555
No 85
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=54.89 E-value=9.1 Score=33.82 Aligned_cols=21 Identities=24% Similarity=0.770 Sum_probs=17.2
Q ss_pred ceeeeCC---CceeeCCCCcccCC
Q 006839 492 SACLDSE---NGKCQCPPGFKGDG 512 (629)
Q Consensus 492 ~~C~~~~---~~~C~C~~Gf~g~~ 512 (629)
++|...+ .+.|.|..||.|..
T Consensus 56 G~C~yI~dl~~~~CrC~~GYtGeR 79 (139)
T PHA03099 56 GDCIHARDIDGMYCRCSHGYTGIR 79 (139)
T ss_pred CEEEeeccCCCceeECCCCccccc
Confidence 4686554 88999999999986
No 86
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=50.74 E-value=19 Score=43.49 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=42.6
Q ss_pred eeeCC-CceeeCCCCcccCCccCCCC-CCCCCCCCCCCCCCCcee-eCCCceeEecCCCCcccCCC
Q 006839 494 CLDSE-NGKCQCPPGFKGDGVKSCVD-IDECKERKACQCSECSCK-DTWGSYECTCSGDLLYIRDH 556 (629)
Q Consensus 494 C~~~~-~~~C~C~~Gf~g~~~~~C~d-ideC~~~~~C~~~~~~C~-nt~Gsy~C~C~~G~~~~~~g 556 (629)
|.++. ...|.|..++...... -.+ .+++..++.|. +.|. +.++.|.|.|..||.+..++
T Consensus 339 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~Cs---q~C~~~~p~~~~c~c~~g~~~~~~~ 400 (877)
T KOG1215|consen 339 CPDVSVGPRCDCMGAKVLPLGA-RTDSNPCESDNGGCS---QLCVPNSPGTFKCACSPGYELRLDK 400 (877)
T ss_pred CCccccCCcccCCccceecccc-cccCCcccccCCccc---eeccCCCCCceeEecCCCcEeccCC
Confidence 66677 8889999998754311 112 33333347888 8999 66899999999999877666
No 87
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=48.84 E-value=19 Score=29.15 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHhhhcccceEEEEeeccEEEEccC
Q 006839 6 SITLKLFLGFLILSLNVHTSVSRFVVEKNSLMVTSPE 42 (629)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~a~~~v~~~~~~v~~p~ 42 (629)
+||||++.+|++.+..+.++-.+- .+.++++..|.
T Consensus 2 aRRlwiLslLAVtLtVALAAPsQK--sKRSVtveqPs 36 (100)
T PF05984_consen 2 ARRLWILSLLAVTLTVALAAPSQK--SKRSVTVEQPS 36 (100)
T ss_pred chhhHHHHHHHHHHHHHhhccccc--cccceeecCCc
Confidence 356766666666554444333221 23455665553
No 88
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=48.84 E-value=6.4 Score=35.39 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhheeeeehhHH
Q 006839 571 WAAVWVILIGLAMAGGGAYLVYKYRLR 597 (629)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~r~r 597 (629)
|+++++++++++|++++.+.+.++|+|
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444444444433
No 89
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=48.40 E-value=15 Score=44.21 Aligned_cols=43 Identities=26% Similarity=0.739 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCCCCCCCCceeeCCCceeEecC-CCCcccCCCCcccccc
Q 006839 515 SCVDIDECKERKACQCSECSCKDTWGSYECTCS-GDLLYIRDHDTCISKT 563 (629)
Q Consensus 515 ~C~dideC~~~~~C~~~~~~C~nt~Gsy~C~C~-~G~~~~~~g~~C~~~~ 563 (629)
.|.-+|.|.++ +|+ .++.|...+..|.|.|. .||. |.+|...+
T Consensus 541 ~C~i~drClPN-~Ce-hgG~C~Qs~~~f~C~C~~TGY~----GatCHtsi 584 (1306)
T KOG3516|consen 541 MCGISDRCLPN-PCE-HGGKCSQSWDDFECNCELTGYK----GATCHTSI 584 (1306)
T ss_pred ccccccccCCc-ccc-CCCcccccccceeEeccccccc----cccccCCC
Confidence 47778889888 999 89999999999999999 7987 56666443
No 90
>PHA02887 EGF-like protein; Provisional
Probab=45.40 E-value=19 Score=31.33 Aligned_cols=37 Identities=19% Similarity=0.495 Sum_probs=25.1
Q ss_pred CCCCCCC--CCCCCCCCceeeCC--CceeEecCCCCcccCCCCcccc
Q 006839 519 IDECKER--KACQCSECSCKDTW--GSYECTCSGDLLYIRDHDTCIS 561 (629)
Q Consensus 519 ideC~~~--~~C~~~~~~C~nt~--Gsy~C~C~~G~~~~~~g~~C~~ 561 (629)
.++|.+. +-|- +++|.-.. ....|.|..||. |..|..
T Consensus 83 f~pC~~eyk~YCi--HG~C~yI~dL~epsCrC~~GYt----G~RCE~ 123 (126)
T PHA02887 83 FEKCKNDFNDFCI--NGECMNIIDLDEKFCICNKGYT----GIRCDE 123 (126)
T ss_pred ccccChHhhCEee--CCEEEccccCCCceeECCCCcc----cCCCCc
Confidence 4456554 4565 46886544 678999999997 566654
No 91
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=45.29 E-value=8.8 Score=45.29 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=16.2
Q ss_pred ceeEecCCCCcccCCCCccccccc
Q 006839 541 SYECTCSGDLLYIRDHDTCISKTA 564 (629)
Q Consensus 541 sy~C~C~~G~~~~~~g~~C~~~~~ 564 (629)
...|.|..||.+ .+..|.+...
T Consensus 750 ~~vC~C~~g~~l--~~~~c~~~~~ 771 (800)
T PTZ00214 750 QGVCMCELDAVL--TKGVCVPAKE 771 (800)
T ss_pred CCeEEeCCccee--cCCeeEeccc
Confidence 458999999976 4568877543
No 92
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=44.30 E-value=50 Score=39.86 Aligned_cols=72 Identities=31% Similarity=0.632 Sum_probs=51.4
Q ss_pred CcccccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCeeEeCCCccccccCCCCcccCCCCCCCCCCCCCCccceee-
Q 006839 417 ETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACL- 495 (629)
Q Consensus 417 d~deC~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~~~~~C~- 495 (629)
..++|......|. +.|.+......|.|.. ++.+...+ ... . +.|...++.|.+. |.
T Consensus 324 ~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~--~~~~~~~~-~~~--~--~~~~~~~g~Csq~---------C~~ 380 (877)
T KOG1215|consen 324 GLNECAERVLKCS-------HKCPDVSVGPRCDCMG--AKVLPLGA-RTD--S--NPCESDNGGCSQL---------CVP 380 (877)
T ss_pred ccccchhhccccc-------CCCCccccCCcccCCc--cceecccc-ccc--C--CcccccCCcccee---------ccC
Confidence 3555655555565 6788888888999998 77665555 331 1 5677778889877 87
Q ss_pred eCC-CceeeCCCCcccC
Q 006839 496 DSE-NGKCQCPPGFKGD 511 (629)
Q Consensus 496 ~~~-~~~C~C~~Gf~g~ 511 (629)
+.+ .+.|.|..||...
T Consensus 381 ~~p~~~~c~c~~g~~~~ 397 (877)
T KOG1215|consen 381 NSPGTFKCACSPGYELR 397 (877)
T ss_pred CCCCceeEecCCCcEec
Confidence 446 9999999999854
No 93
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=43.86 E-value=43 Score=30.06 Aligned_cols=77 Identities=18% Similarity=0.365 Sum_probs=46.8
Q ss_pred chhhhHHHHhhhCCCCcccchHHHHHHHHHHcCCChhhhccccCCCCCCCCChhhHHHHHhhcCCCCCCcceecCeeEec
Q 006839 304 VWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIEKCMGDPDADADNPVLKEEQDAQVGKGSRGDVTILPTLVVN 383 (629)
Q Consensus 304 ~ww~Y~~~f~~~C~~~~~~~~~~C~~~v~~~~~ld~~~i~~C~~d~~~d~~n~iL~~~~~~q~~~~~~~~v~~~P~v~in 383 (629)
.+|+|....-.. . ...+..=-..+++.+++|.+++++|+.+.. ....++++...-. ..++...|++.+|
T Consensus 68 ~~~~~~~~lf~~---~-~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~gi~gtPt~~v~ 136 (154)
T cd03023 68 KYLEFHNALMAT---R-GRLNEESLLRIAKKAGLDEAKLKKDMDDPE---IEATIDKNRQLAR----ALGITGTPAFIIG 136 (154)
T ss_pred HHHHHHHHHHhc---C-CCCCHHHHHHHHHHcCCCHHHHHHHhhChH---HHHHHHHHHHHHH----HcCCCcCCeEEEC
Confidence 688887665331 1 122233345678899999999999985432 2233444333222 2347789999999
Q ss_pred Ceeeeccc
Q 006839 384 NRQYRGKL 391 (629)
Q Consensus 384 ~~~~~c~~ 391 (629)
+..+.+..
T Consensus 137 g~~~~G~~ 144 (154)
T cd03023 137 DTVIPGAV 144 (154)
T ss_pred CEEecCCC
Confidence 87665543
No 94
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=42.63 E-value=3e+02 Score=32.76 Aligned_cols=20 Identities=30% Similarity=0.831 Sum_probs=13.6
Q ss_pred eeeeCC-Ccee--eCCCCcccCC
Q 006839 493 ACLDSE-NGKC--QCPPGFKGDG 512 (629)
Q Consensus 493 ~C~~~~-~~~C--~C~~Gf~g~~ 512 (629)
+|.... +..| .||.|-.|..
T Consensus 557 ~CaHf~dgp~CV~~CP~G~~G~~ 579 (1177)
T KOG1025|consen 557 QCAHFRDGPHCVSDCPDGVTGPK 579 (1177)
T ss_pred hhhhcCCCcchhccCCCcccCCC
Confidence 354445 6677 5999988765
No 95
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.44 E-value=7.1 Score=39.61 Aligned_cols=35 Identities=9% Similarity=-0.038 Sum_probs=31.3
Q ss_pred EEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCCCC
Q 006839 98 FVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA 132 (629)
Q Consensus 98 i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~~~ 132 (629)
+.+++||+|+..+|.+-+++.|-+|+|..++....
T Consensus 149 ~~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~~ 183 (374)
T COG5540 149 DRCNRRGNETEEDPTRERRRTRFKGVIRGSERNGE 183 (374)
T ss_pred HHHHHccCccccCccccchhccccceeeccccCCc
Confidence 56789999999999999999999999999887543
No 96
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=39.91 E-value=43 Score=34.16 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHcCCcEEEEEECCCCCc------eecCCCCCccccccccCcccccEEEEeHHHH-HHHHHHHcCCC
Q 006839 107 FFALKVWNAQKAGASAVLVADDIEEAL------ITMDTPEEDISSAKYIENITIPSALIDKSFG-ETLKKALSGGE 175 (629)
Q Consensus 107 ~F~~K~~nAq~aGA~avII~n~~~~~~------~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G-~~l~~~l~~~~ 175 (629)
+-+++++-|+.|||.+|++.+..+.++ -.|.++.+- ..--..++||++.|-|.+- .......+.|.
T Consensus 16 ~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I---~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGv 88 (283)
T cd04727 16 TNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMI---KEIMDAVSIPVMAKVRIGHFVEAQILEALGV 88 (283)
T ss_pred CCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHH---HHHHHhCCCCeEEeeehhHHHHHHHHHHcCC
Confidence 457899999999999999988765443 333322220 1112357999999988763 23333334553
No 97
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.73 E-value=22 Score=27.26 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhheeeeehhHHHhhhhhHHHHHHhhcCCCCCCCC
Q 006839 573 AVWVILIGLAMAGGGAYLVYKYRLRSYMDSEIRAIMAQYMPLDSQSEV 620 (629)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~~l~q~~~~~~~~~~ 620 (629)
-+++++..+++...+.+.+|+++.|+-++.+.+.+ +||+++..+
T Consensus 11 ~a~~t~~~~l~fiavi~~ayr~~~K~~~d~aa~~~----l~l~Dd~q~ 54 (60)
T COG4736 11 DAWGTIAFTLFFIAVIYFAYRPGKKGEFDEAARGI----LPLNDDAQD 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHhccC----CCCCcchhh
Confidence 34444444444445667777777666655554433 666655543
No 98
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=39.05 E-value=29 Score=29.96 Aligned_cols=32 Identities=31% Similarity=0.824 Sum_probs=21.3
Q ss_pred CcccCCCCCCCCCCCCCCccceeeeCCCceeeCCCCcccC
Q 006839 472 GKCKINNGGCWHESKDGHTYSACLDSENGKCQCPPGFKGD 511 (629)
Q Consensus 472 ~~C~~~~~~C~~~~~~~~~~~~C~~~~~~~C~C~~Gf~g~ 511 (629)
+.|.. .+.|... +.|.......|.|++||+..
T Consensus 78 d~Cd~-y~~CG~~-------g~C~~~~~~~C~Cl~GF~P~ 109 (110)
T PF00954_consen 78 DQCDV-YGFCGPN-------GICNSNNSPKCSCLPGFEPK 109 (110)
T ss_pred cCCCC-ccccCCc-------cEeCCCCCCceECCCCcCCC
Confidence 45643 2466655 88954336679999999753
No 99
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=38.62 E-value=36 Score=43.49 Aligned_cols=54 Identities=28% Similarity=0.583 Sum_probs=31.7
Q ss_pred eeeCC-Ccee-eCCCCcccCCccCCCCCCCCCCCCCCCCCCCceeeCC--CceeEe-cCCCCc
Q 006839 494 CLDSE-NGKC-QCPPGFKGDGVKSCVDIDECKERKACQCSECSCKDTW--GSYECT-CSGDLL 551 (629)
Q Consensus 494 C~~~~-~~~C-~C~~Gf~g~~~~~C~dideC~~~~~C~~~~~~C~nt~--Gsy~C~-C~~G~~ 551 (629)
|.... +-.| +|.+||.|++... ..-| |..= +|. ++..|..+. ....|+ |++||+
T Consensus 749 C~~~t~G~~C~~C~~GfYg~~~~~-~~~d-C~~C-~Cp-~~~~~~~~~~~~~~iCk~Cp~gyt 807 (1705)
T KOG1836|consen 749 CKHNTFGGQCAQCVDGFYGLPDLG-TSGD-CQPC-PCP-NGGACGQTPEILEVVCKNCPPGYT 807 (1705)
T ss_pred cccCCCCCchhhhcCCCCCccccC-CCCC-CccC-CCC-CChhhcCcCcccceecCCCCCCCc
Confidence 44333 6666 6999999876210 0111 5432 444 445665554 667888 988886
No 100
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=37.98 E-value=24 Score=37.10 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhheeeeehhHHHhhhhhHHH
Q 006839 577 ILIGLAMAGGGAYLVYKYRLRSYMDSEIRA 606 (629)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~ 606 (629)
.+++++|+.++.|++.+||+++-|++..+.
T Consensus 318 AIvvIVLIMvIIYLILRYRRKKKMkKKLQY 347 (353)
T TIGR01477 318 AILIIVLIMVIIYLILRYRRKKKMKKKLQY 347 (353)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence 344444555889999999987888766443
No 101
>PTZ00046 rifin; Provisional
Probab=37.84 E-value=24 Score=37.24 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=20.0
Q ss_pred HHHHHHHHhhheeeeehhHHHhhhhhHH
Q 006839 578 LIGLAMAGGGAYLVYKYRLRSYMDSEIR 605 (629)
Q Consensus 578 ~~~~~~~~~~~~~~~~~r~r~~~~~~~~ 605 (629)
+++++|+.++.|++.+||+++-|++..+
T Consensus 324 IvVIVLIMvIIYLILRYRRKKKMkKKLQ 351 (358)
T PTZ00046 324 IVVIVLIMVIIYLILRYRRKKKMKKKLQ 351 (358)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHH
Confidence 3444455588999999998788876644
No 102
>KOG4291 consensus Mucin/alpha-tectorin [Extracellular structures]
Probab=37.63 E-value=62 Score=39.40 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=72.0
Q ss_pred CccccCCCcccccCCCCCCCCCcCCCccccccCCCceeeeeCCCCCeeEeCCCccccccCCCCcccCCCCCCCCCCCCCC
Q 006839 410 PAVCLSGETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGH 489 (629)
Q Consensus 410 ~~~C~~~d~deC~~~~~~C~~~~~~~~~~C~n~~g~~~C~C~~~~G~~~~~dg~~~C~~~~~~~C~~~~~~C~~~~~~~~ 489 (629)
...|. ++++|..-...|.- +.-+..++...+..+|.|.. ||.+.+. ..|.+. ++|..+.-.|..+
T Consensus 416 ~~~ct--~~~~~~~~~~~~~~--~~~g~~~~~~~~~~q~~~~~--G~~~~~~--~~~~~~--~~~~~ns~~~~~n----- 480 (1043)
T KOG4291|consen 416 VATCT--DVVRCRARCEQPAL--TDWGTKARQSDGGNQCFCFR--GYIYDVP--PECEPV--SECKTNSDACKKN----- 480 (1043)
T ss_pred CceeE--ecccceeeeccccc--cccccceeecCCcccceecc--CcccccC--cccccc--cccccchhhccCC-----
Confidence 33477 67777543222321 11124555566788999999 7766544 346654 5665443222211
Q ss_pred ccceeeeCCCceeeCCCCcccCCccCCCCCCCCCCCCCCCCCCCceeeCCCceeEecCCCCc
Q 006839 490 TYSACLDSENGKCQCPPGFKGDGVKSCVDIDECKERKACQCSECSCKDTWGSYECTCSGDLL 551 (629)
Q Consensus 490 ~~~~C~~~~~~~C~C~~Gf~g~~~~~C~dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~ 551 (629)
..+.|.|..|+.......+...+++... .++ +...+.++.+.|.+.+.+||.
T Consensus 481 --------~~~~~~~~~~~~~~~~~~~~~r~~~~v~-~~~-~~~~~~~~~~~~~~~~~~~f~ 532 (1043)
T KOG4291|consen 481 --------GRWYCRNFEGFSITWQGDNQVRMFDDVT-YGT-QARIMISLYGYYEDKVRKKFR 532 (1043)
T ss_pred --------ceeccccccccccccccccccccccccc-ccc-cceeEeeeccceeeccccCCc
Confidence 1466788888875432223566777665 566 668999999999999999985
No 103
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=37.51 E-value=79 Score=24.57 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=33.9
Q ss_pred cEEEEeCCCcCHHHHHHHHHHcCCcEEEEEECCCCCc-eecCCCCCccccccccCcccccEEEEeHH
Q 006839 97 NFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEAL-ITMDTPEEDISSAKYIENITIPSALIDKS 162 (629)
Q Consensus 97 ~i~Lv~RG~C~F~~K~~nAq~aGA~avII~n~~~~~~-~~m~~~~~~~~~~~~~~~i~IP~~~I~~~ 162 (629)
+|.|..+-+|+|-.|++.+-+.-......+|-..+.. ..+ .......++|.++|...
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~---------~~~~g~~~vP~ifi~g~ 59 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSL---------RAVTGAMTVPQVFIDGE 59 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHH---------HHHhCCCCcCeEEECCE
Confidence 5889999999999999988755333344444322211 001 00012357999988743
No 104
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=37.36 E-value=29 Score=35.96 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhheeeeehhHHHhhhhhH
Q 006839 575 WVILIGLAMAGGGAYLVYKYRLRSYMDSEI 604 (629)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~ 604 (629)
++++++++++.++.|++++||+++-|+...
T Consensus 262 iiaIliIVLIMvIIYLILRYRRKKKmkKKl 291 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYRRKKKMKKKL 291 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 334444555557889999999667776543
No 105
>PRK01844 hypothetical protein; Provisional
Probab=34.55 E-value=50 Score=26.29 Aligned_cols=16 Identities=6% Similarity=0.353 Sum_probs=8.6
Q ss_pred hhheeeeehhHHHhhh
Q 006839 586 GGAYLVYKYRLRSYMD 601 (629)
Q Consensus 586 ~~~~~~~~~r~r~~~~ 601 (629)
++.|.+-++-.++|++
T Consensus 19 ~~Gff~ark~~~k~lk 34 (72)
T PRK01844 19 ALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444567775
No 106
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=32.24 E-value=2.6e+02 Score=29.68 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=57.3
Q ss_pred CcEEEEeCCCcCHHHHH--HHHHHcCCcEEEEEECCCCCceecCCCCCccccccccCcccccEEEEeHHHHHHHHHHHcC
Q 006839 96 PNFVLVDRGDCFFALKV--WNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173 (629)
Q Consensus 96 ~~i~Lv~RG~C~F~~K~--~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~G~~l~~~l~~ 173 (629)
|.+++.+|-.=-..-|. ..|..+||.|+|+-.+.+..+++-+.-+-. .......||++.+...++..++.
T Consensus 90 Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~Gd~gy~----~~s~PtPIPva~v~en~~~y~~~---- 161 (486)
T COG4882 90 GRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVTGGDWGYS----VSSSPTPIPVAVVPENYSRYAEE---- 161 (486)
T ss_pred CeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEeccccccc----CCCCCCCcceEEeccCcchhhcc----
Confidence 77888777654444443 468899999999987765554444322111 11124579999999998887653
Q ss_pred CCeEEEEEEecccccCCCCceeEEEEeccC
Q 006839 174 GEMVNVNLDWREAVPHPDDRVEYELWTNSN 203 (629)
Q Consensus 174 ~~~v~~~~~~~~~~~~~~~~v~~~~~~~s~ 203 (629)
...|.+.++. -+ .-+-.|+.++.+.
T Consensus 162 ~~rvrl~vD~---~~--~~ty~y~~Ia~~~ 186 (486)
T COG4882 162 AGRVRLWVDA---CV--ERTYDYNVIAVDG 186 (486)
T ss_pred ceeEEEEEec---cc--ceeEEEEEEEecC
Confidence 2346666555 12 3344556655443
No 107
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=31.21 E-value=52 Score=23.96 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=9.6
Q ss_pred HHHHHhhheeeeehhHHHhhh
Q 006839 581 LAMAGGGAYLVYKYRLRSYMD 601 (629)
Q Consensus 581 ~~~~~~~~~~~~~~r~r~~~~ 601 (629)
+++...+.+++++++.++.++
T Consensus 19 ~~~F~gi~~w~~~~~~k~~~e 39 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPRNKKRFE 39 (49)
T ss_pred HHHHHHHHHHHHcccchhhHH
Confidence 333334445555555344433
No 108
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=30.67 E-value=41 Score=34.37 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEECCCCC------ceecCCCCCccccccccCcccccEEEEeHHH
Q 006839 107 FFALKVWNAQKAGASAVLVADDIEEA------LITMDTPEEDISSAKYIENITIPSALIDKSF 163 (629)
Q Consensus 107 ~F~~K~~nAq~aGA~avII~n~~~~~------~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~~ 163 (629)
+-.++++-|++|||.||+.....+.+ ...|.++.+- ..--..++||++.+-+..
T Consensus 18 ~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I---~~I~~~V~iPVig~~kig 77 (287)
T TIGR00343 18 VNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMI---KEIMDAVSIPVMAKVRIG 77 (287)
T ss_pred CCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHH---HHHHHhCCCCEEEEeecc
Confidence 45789999999999999997766543 3344433321 111235799999987765
No 109
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=29.06 E-value=12 Score=34.45 Aligned_cols=32 Identities=13% Similarity=-0.001 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhheeeeehhHHHhhhhh
Q 006839 572 AAVWVILIGLAMAGGGAYLVYKYRLRSYMDSE 603 (629)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~ 603 (629)
.+++++.+.+++++++.+..++.|+..|++++
T Consensus 55 VVGVGg~ill~il~lvf~~c~r~kktdfidSd 86 (154)
T PF04478_consen 55 VVGVGGPILLGILALVFIFCIRRKKTDFIDSD 86 (154)
T ss_pred EecccHHHHHHHHHhheeEEEecccCccccCC
Confidence 33333333333333333333344434666543
No 110
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=28.55 E-value=38 Score=40.32 Aligned_cols=36 Identities=31% Similarity=0.878 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCCceeeCCCceeEecCC-CCcccCCCCccccc
Q 006839 521 ECKERKACQCSECSCKDTWGSYECTCSG-DLLYIRDHDTCISK 562 (629)
Q Consensus 521 eC~~~~~C~~~~~~C~nt~Gsy~C~C~~-G~~~~~~g~~C~~~ 562 (629)
.|..+ ||. ++++|...+.+|.|.|.. ||. |.+|...
T Consensus 625 ~C~~n-PC~-N~g~C~egwNrfiCDCs~T~~~----G~~CerE 661 (1591)
T KOG3514|consen 625 ICESN-PCQ-NGGKCSEGWNRFICDCSGTGFE----GRTCERE 661 (1591)
T ss_pred ccCCC-ccc-CCCCccccccccccccccCccc----Cccccce
Confidence 48887 999 999999999999999986 554 7888764
No 111
>KOG3512 consensus Netrin, axonal chemotropic factor [Signal transduction mechanisms]
Probab=28.24 E-value=3.8e+02 Score=29.46 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=14.9
Q ss_pred eeEecCeeeeccccCCc-eeeeccCC
Q 006839 379 TLVVNNRQYRGKLEKGA-VLKAICSG 403 (629)
Q Consensus 379 ~v~in~~~~~c~~~~~~-~~c~cc~G 403 (629)
-.-+|+-.-+|..+..+ ..|.|.-+
T Consensus 277 RCKCNgHAs~Cv~d~~~~ltCdC~HN 302 (592)
T KOG3512|consen 277 RCKCNGHASRCVMDESSHLTCDCEHN 302 (592)
T ss_pred eeeecCccceeeeccCCceEEecccC
Confidence 34456666667666655 66666544
No 112
>smart00051 DSL delta serrate ligand.
Probab=27.93 E-value=99 Score=23.98 Aligned_cols=44 Identities=20% Similarity=0.583 Sum_probs=24.6
Q ss_pred CceeeCCCCcccCCccCCCCCCCCCCCCCCCCCCCceeeCCCceeEecCCCCc
Q 006839 499 NGKCQCPPGFKGDGVKSCVDIDECKERKACQCSECSCKDTWGSYECTCSGDLL 551 (629)
Q Consensus 499 ~~~C~C~~Gf~g~~~~~C~dideC~~~~~C~~~~~~C~nt~Gsy~C~C~~G~~ 551 (629)
.+.-.|.++|.|.. |. ..|.....+. .+..|.. .| .|.|.+||.
T Consensus 16 ~~rv~C~~~~yG~~---C~--~~C~~~~d~~-~~~~Cd~-~G--~~~C~~Gw~ 59 (63)
T smart00051 16 QIRVTCDENYYGEG---CN--KFCRPRDDFF-GHYTCDE-NG--NKGCLEGWM 59 (63)
T ss_pred EEEeeCCCCCcCCc---cC--CEeCcCcccc-CCccCCc-CC--CEecCCCCc
Confidence 45567899998876 53 1232211122 3345532 23 467899997
No 113
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=26.59 E-value=1.4e+02 Score=24.60 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=38.9
Q ss_pred CcEEEEeCC-----CcCHHHHHHHHH-HcCCcEEEEEECCCCCceecCCCCCccccccccCcccccEEEEeHH---HHHH
Q 006839 96 PNFVLVDRG-----DCFFALKVWNAQ-KAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKS---FGET 166 (629)
Q Consensus 96 ~~i~Lv~RG-----~C~F~~K~~nAq-~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~~i~IP~~~I~~~---~G~~ 166 (629)
.+|+|...| .|.|-.|++..- +.|+. ...+|-..++-+ +.. -......-++|.++|... ..+.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~-y~~idv~~~~~~-~~~------l~~~~g~~tvP~vfi~g~~iGG~~~ 79 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD-FGTFDILEDEEV-RQG------LKEYSNWPTFPQLYVNGELVGGCDI 79 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC-eEEEEcCCCHHH-HHH------HHHHhCCCCCCEEEECCEEEeCHHH
Confidence 467777776 899999998665 45544 334442211100 000 000012347999999865 4455
Q ss_pred HHHHHcCC
Q 006839 167 LKKALSGG 174 (629)
Q Consensus 167 l~~~l~~~ 174 (629)
|++..++|
T Consensus 80 l~~l~~~g 87 (90)
T cd03028 80 VKEMHESG 87 (90)
T ss_pred HHHHHHcC
Confidence 66655555
No 114
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=25.03 E-value=51 Score=38.57 Aligned_cols=53 Identities=23% Similarity=0.451 Sum_probs=29.5
Q ss_pred cee--eCCCCcccCCccCCCCCCCCCCCCCCCCCCCce-eeCCCceeE--ecCCCCcccCC
Q 006839 500 GKC--QCPPGFKGDGVKSCVDIDECKERKACQCSECSC-KDTWGSYEC--TCSGDLLYIRD 555 (629)
Q Consensus 500 ~~C--~C~~Gf~g~~~~~C~dideC~~~~~C~~~~~~C-~nt~Gsy~C--~C~~G~~~~~~ 555 (629)
-.| .|+++|.......|....+|..-+.+. +...- +-+.| .| .|+.||..+..
T Consensus 262 G~CV~~Cp~~~Y~~e~~RCvt~~~C~~l~~~~-~~~i~G~~~~~--~Cv~~CPsGy~~N~~ 319 (1025)
T KOG4258|consen 262 GVCVEACPPDYYLFENWRCVTREECALLHSLS-NSVISGVIHAG--QCVAKCPSGYKRNSS 319 (1025)
T ss_pred CceeccCCcchhhhccceeccHHHHHHhcCcc-cccccceeccc--cchhhCCCcceecCc
Confidence 346 599988744332398888898653333 11100 00111 34 58888876655
No 115
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=24.91 E-value=23 Score=33.38 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEECCCC------CceecCCCCCccccccccCcccccEEE---EeHHHHHHHHHHHc
Q 006839 107 FFALKVWNAQKAGASAVLVADDIEE------ALITMDTPEEDISSAKYIENITIPSAL---IDKSFGETLKKALS 172 (629)
Q Consensus 107 ~F~~K~~nAq~aGA~avII~n~~~~------~~~~m~~~~~~~~~~~~~~~i~IP~~~---I~~~~G~~l~~~l~ 172 (629)
+-.++++-|++|||.||+.....+. ....|..|.- -.+--+.++||++- |.+-.=.+|+++|.
T Consensus 22 ~n~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~---I~eI~~aVsIPVMAK~RIGHfvEAqiLealg 93 (208)
T PF01680_consen 22 TNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKM---IKEIMDAVSIPVMAKVRIGHFVEAQILEALG 93 (208)
T ss_dssp SSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHH---HHHHHHH-SSEEEEEEETT-HHHHHHHHHTT
T ss_pred cCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHH---HHHHHHheEeceeeccccceeehhhhHHHhC
Confidence 4478999999999999999876542 2344432211 01112356899854 66666667777774
No 116
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=24.58 E-value=68 Score=37.45 Aligned_cols=49 Identities=24% Similarity=0.663 Sum_probs=0.0
Q ss_pred eeeCCCCccc--CCccCCC----CCCCCCCC-CCCC-CCCCceeeCCCceeEecCCCC
Q 006839 501 KCQCPPGFKG--DGVKSCV----DIDECKER-KACQ-CSECSCKDTWGSYECTCSGDL 550 (629)
Q Consensus 501 ~C~C~~Gf~g--~~~~~C~----dideC~~~-~~C~-~~~~~C~nt~Gsy~C~C~~G~ 550 (629)
.|.|.+||.. .+.. |+ ..-.-..+ ..|. |+...=...+|+-.|.|..||
T Consensus 260 ~C~C~aGye~~~~~~~-C~aCp~G~yK~~~~~~~C~~CP~~S~s~~ega~~C~C~~gy 316 (996)
T KOG0196|consen 260 GCVCKAGYEEAENGKA-CQACPPGTYKASQGDSLCLPCPPNSHSSSEGATSCTCENGY 316 (996)
T ss_pred ceeecCCCCcccCCCc-ceeCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccccCCc
No 117
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=23.35 E-value=77 Score=26.96 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHHHHhhheeeeehh-HHHhh
Q 006839 568 RSAWAAVWVILIGLAMAGGGAYLVYKYR-LRSYM 600 (629)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~r~~~ 600 (629)
..+|.+.++++++++++.++.+++.|.. .++|+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~ 47 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYL 47 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567777777666665554444444443 35554
No 118
>PRK00523 hypothetical protein; Provisional
Probab=23.06 E-value=1.3e+02 Score=24.09 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=7.9
Q ss_pred hhheeeeehhHHHhhh
Q 006839 586 GGAYLVYKYRLRSYMD 601 (629)
Q Consensus 586 ~~~~~~~~~r~r~~~~ 601 (629)
++.|.+-++-.++|++
T Consensus 20 ~~Gffiark~~~k~l~ 35 (72)
T PRK00523 20 IIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444466664
No 119
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=21.69 E-value=66 Score=23.79 Aligned_cols=24 Identities=38% Similarity=0.923 Sum_probs=15.8
Q ss_pred CceeeCCCCcccCCccCCCCCCCC
Q 006839 499 NGKCQCPPGFKGDGVKSCVDIDEC 522 (629)
Q Consensus 499 ~~~C~C~~Gf~g~~~~~C~dideC 522 (629)
...|.|++||..+....|...++|
T Consensus 32 ~~gC~C~~G~v~~~~~~CV~~~~C 55 (55)
T PF01826_consen 32 VEGCFCPPGYVRNDNGRCVPPSEC 55 (55)
T ss_dssp ESEEEETTTEEEETTSEEEEGGGC
T ss_pred CccCCCCCCeeEcCCCCEEcHHHC
Confidence 345999999986654336655544
No 120
>PF15240 Pro-rich: Proline-rich
Probab=20.94 E-value=48 Score=31.37 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhhcc
Q 006839 11 LFLGFLILSLNVHT 24 (629)
Q Consensus 11 ~~~~l~~~~~~~~~ 24 (629)
|+|||.++|||+++
T Consensus 2 LlVLLSvALLALSS 15 (179)
T PF15240_consen 2 LLVLLSVALLALSS 15 (179)
T ss_pred hhHHHHHHHHHhhh
Confidence 44444444444443
Done!