Query 006841
Match_columns 629
No_of_seqs 293 out of 958
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 10:23:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i3n_A Kelch-like protein 11; 99.9 5.9E-22 2E-26 201.1 8.4 227 20-327 25-264 (279)
2 2vkp_A BTB/POZ domain-containi 99.8 2.3E-21 7.9E-26 169.7 9.4 104 21-133 2-109 (109)
3 3hve_A Gigaxonin; ubiquitin, c 99.8 4.7E-21 1.6E-25 192.0 11.4 227 20-326 24-256 (256)
4 3htm_A Speckle-type POZ protei 99.8 4.1E-21 1.4E-25 180.1 9.5 123 20-159 27-149 (172)
5 2if5_A Zinc finger and BTB dom 99.8 4E-21 1.4E-25 171.5 8.6 102 21-130 19-120 (120)
6 1r29_A B-cell lymphoma 6 prote 99.8 7.4E-21 2.5E-25 171.5 9.3 103 20-131 22-125 (127)
7 3b84_A Zinc finger and BTB dom 99.8 2.7E-21 9.4E-26 173.2 6.2 100 21-132 18-117 (119)
8 4eoz_A Speckle-type POZ protei 99.8 1.3E-21 4.6E-26 178.6 4.1 123 20-159 18-140 (145)
9 2z8h_A Transcription regulator 99.8 5.3E-21 1.8E-25 175.6 8.1 107 20-136 29-136 (138)
10 2vpk_A Myoneurin; transcriptio 99.8 7.5E-21 2.5E-25 169.0 8.3 99 21-131 16-116 (116)
11 1buo_A POZ domain, protein (pr 99.8 9.6E-21 3.3E-25 169.9 8.3 101 20-133 21-121 (121)
12 2yy9_A Zinc finger and BTB dom 99.8 3.6E-21 1.2E-25 176.5 5.2 103 20-134 18-120 (135)
13 2ppi_A Gigaxonin; BTB domain, 99.8 1.4E-20 4.9E-25 174.7 7.3 103 20-130 40-144 (144)
14 2q81_A MIZ-1 protein; BTB/POZ 99.8 1.3E-20 4.4E-25 168.9 5.8 97 21-130 21-117 (119)
15 3ga1_A Nucleus accumbens-assoc 99.8 8.8E-21 3E-25 172.0 4.7 101 21-133 27-128 (129)
16 3ohu_A Transcription regulator 99.8 6E-21 2.1E-25 171.7 3.4 100 20-129 25-125 (125)
17 2ihc_A Transcription regulator 99.8 1E-20 3.4E-25 170.7 3.4 101 20-130 22-123 (124)
18 3m5b_A Zinc finger and BTB dom 99.8 3.2E-20 1.1E-24 167.6 6.6 94 21-131 24-117 (119)
19 3hqi_A Speckle-type POZ protei 99.8 4.7E-19 1.6E-23 182.1 9.0 132 21-169 168-302 (312)
20 3fkc_A Transcriptional regulat 99.7 2.1E-18 7.3E-23 154.3 7.2 88 20-114 24-112 (116)
21 2ast_A S-phase kinase-associat 99.4 7.9E-13 2.7E-17 125.1 8.8 97 30-135 3-128 (159)
22 4ajy_C Transcription elongatio 99.2 5.8E-11 2E-15 103.7 7.9 80 30-112 4-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.1 4.2E-10 1.4E-14 104.7 10.1 91 30-133 4-121 (141)
24 2p1m_A SKP1-like protein 1A; F 98.8 5.1E-10 1.7E-14 106.2 1.6 92 30-133 6-125 (160)
25 1hv2_A Elongin C, ELC1; protei 98.3 1.4E-06 4.7E-11 76.6 7.6 79 30-112 6-99 (99)
26 2fnj_C Transcription elongatio 98.2 1.6E-06 5.6E-11 75.6 6.4 80 30-112 3-96 (96)
27 3v7d_A Suppressor of kinetocho 98.2 4.4E-06 1.5E-10 80.0 9.1 96 29-133 8-133 (169)
28 1vcb_B Protein (elongin C); tu 97.6 5.8E-05 2E-09 67.8 5.8 81 29-112 18-112 (112)
29 3drz_A BTB/POZ domain-containi 97.5 0.00045 1.5E-08 61.1 9.3 93 29-130 7-105 (107)
30 3drx_A BTB/POZ domain-containi 95.6 0.036 1.2E-06 54.6 9.1 94 29-131 13-112 (202)
31 3kvt_A Potassium channel prote 94.2 0.023 7.7E-07 51.1 2.9 83 30-115 7-92 (115)
32 1s1g_A Potassium voltage-gated 91.9 0.19 6.4E-06 45.7 5.3 81 29-115 14-99 (124)
33 1t1d_A Protein (potassium chan 91.4 0.2 7E-06 43.8 4.8 82 30-115 3-89 (100)
34 1nn7_A Potassium channel KV4.2 90.1 0.13 4.3E-06 45.4 2.3 80 30-115 2-86 (105)
35 2nz0_B Potassium voltage-gated 89.9 0.18 6.2E-06 46.8 3.3 83 27-115 34-121 (140)
36 1pd7_B MAD1; PAH2, SIN3, eukar 62.9 1.9 6.3E-05 29.1 0.4 17 98-114 3-19 (26)
37 1vjh_A BET V I allergen family 48.3 10 0.00035 33.7 2.9 33 425-468 90-122 (122)
38 2r9r_B Paddle chimera voltage 48.0 20 0.00069 39.4 5.8 83 29-115 53-140 (514)
39 2eqx_A Kelch repeat and BTB do 26.7 48 0.0016 28.3 3.5 35 93-133 6-40 (105)
No 1
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.85 E-value=5.9e-22 Score=201.13 Aligned_cols=227 Identities=12% Similarity=0.116 Sum_probs=160.2
Q ss_pred eeeccCCceeEEEEEc---CEEEEecccccccCCHHHHHhhcCCCCCCCCceeecC------CCCCCHHHHHHHHHHhhc
Q 006841 20 RSISSEVSSDLIIQVK---GTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLP------DFPGGIDAFELCAKFCYG 90 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~---g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~------d~pGGaeaFell~~FcYg 90 (629)
.++.+|.+|||+|.|| |+.|++||.+|+++|+||++||++...+....+|.|+ +++ +++|+.+++|+||
T Consensus 25 ~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~--~~~f~~ll~~~Yt 102 (279)
T 3i3n_A 25 EQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPE--PDTVEAVIEYMYT 102 (279)
T ss_dssp HHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSC--HHHHHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCC--HHHHHHHHHhhCc
Confidence 3678899999999998 9999999999999999999999987554444789998 564 7999999999999
Q ss_pred CccccchhhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhccchhHHHHhhcCCchhHhhHHhCc---hhHHHHHH
Q 006841 91 ITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGI---TSRCIEAI 167 (629)
Q Consensus 91 ~~i~it~~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~sw~dsia~L~sC~~L~~~Ae~l~i---v~rcidsi 167 (629)
|++.++..||..++.||++|||++ |+..|+.||.+.+.+ .+|..++.+|+.+++ .+.|.+-|
T Consensus 103 g~~~i~~~~v~~ll~~A~~l~i~~------L~~~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i 167 (279)
T 3i3n_A 103 GRIRVSTGSVHEVLELADRFLLIR------LKEFCGEFLKKKLHL---------SNCVAIHSLAHMYTLSQLALKAADMI 167 (279)
T ss_dssp SEEEEETTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHcCCc---------chHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 999999999999999999999985 789999999998855 477778888888773 44555555
Q ss_pred HHHhccCCCCCcCccccCCCCCCCCCCCCCcccccCCCCCCchhhhhhccChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006841 168 ASKVLTHPSKVSLSHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIY 247 (629)
Q Consensus 168 A~ka~~d~~~~~~s~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~eDl~~L~idlf~rVi~amk~~g~~~~~~Ig~al~~Y 247 (629)
+..... + +-.+++..|+.+....++..-. -.+..+..|-.+
T Consensus 168 ~~~f~~----v------------------------------~~~~~f~~L~~~~l~~lL~~d~-L~v~sE~~vf~a---- 208 (279)
T 3i3n_A 168 RRNFHK----V------------------------------IQDEEFYTLPFHLIRDWLSDLE-ITVDSEEVLFET---- 208 (279)
T ss_dssp HHTHHH----H------------------------------TTSSGGGGSCHHHHHHHHTCSS-CCCSCHHHHHHH----
T ss_pred HHHHHH----H------------------------------hcCcChhcCCHHHHHHHhcCcC-CCCCCHHHHHHH----
Confidence 432210 0 0014666788888777765321 112223344444
Q ss_pred HHHhcCCcccCCCCCCCcCCCCCCCchhhhhHhHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 006841 248 ASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEK-GSVSCSFLLKLLKAANILNASSSSKMELAR 326 (629)
Q Consensus 248 A~r~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~LLP~ek-~svsc~FL~~LLr~A~~l~as~~cr~~Ler 326 (629)
+.+|+-+- ....+..+ ..||..=| ..+|..+|..+++..-.+..++.|+.-|..
T Consensus 209 v~~W~~~~----------------------~~~r~~~~---~~ll~~VRf~l~~~~~L~~~v~~~~l~~~~~~c~~~l~e 263 (279)
T 3i3n_A 209 VLKWVQRN----------------------AEERERYF---EELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVAD 263 (279)
T ss_dssp HHHHHHTT----------------------HHHHTTTH---HHHHTTSCGGGSCHHHHHHTTTTSHHHHTCHHHHHHHHH
T ss_pred HHHHHHcC----------------------HHHHHHHH---HHHHHhcCCCCCCHHHHHHHhhccchhcCCHHHHHHHHH
Confidence 45665320 01111222 33444333 348999999999888888899999887654
Q ss_pred H
Q 006841 327 R 327 (629)
Q Consensus 327 R 327 (629)
-
T Consensus 264 a 264 (279)
T 3i3n_A 264 A 264 (279)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.84 E-value=2.3e-21 Score=169.69 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=92.2
Q ss_pred eeccCCceeEEEEEcC----EEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccc
Q 006841 21 SISSEVSSDLIIQVKG----TRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLS 96 (629)
Q Consensus 21 ~~~~~~lcDV~I~V~g----~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it 96 (629)
++.++.+|||+|.|+| +.|++||.+|+++|+||++||.+...+.. .+|.|++++ +++|+.+++|+||+++.++
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~--~~~f~~~l~~iYt~~~~~~ 78 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVE--PAAFLILLKYMYSDEIDLE 78 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSC--HHHHHHHHHHHHHCCCCCC
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCC--HHHHHHHHHHHcCCCccCC
Confidence 5678999999999999 99999999999999999999998765555 789999996 7999999999999999999
Q ss_pred hhhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhh
Q 006841 97 AYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 97 ~~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
.+||..++.+|++++|++ |...|+.||.+.+
T Consensus 79 ~~~~~~ll~~A~~~~~~~------L~~~c~~~l~~~l 109 (109)
T 2vkp_A 79 ADTVLATLYAAKKYIVPA------LAKACVNFLETSL 109 (109)
T ss_dssp TTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHH------HHHHHHHHHHhhC
Confidence 999999999999999996 8999999998764
No 3
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.84 E-value=4.7e-21 Score=191.96 Aligned_cols=227 Identities=12% Similarity=0.105 Sum_probs=148.3
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCC--CCCCceeecCCCCCCHHHHHHHHHHhhcCccccch
Q 006841 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPE--SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA 97 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~--~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~ 97 (629)
.++.++.+|||+|.|||+.|++||.+|+++|+||++||+.... +....+|.|++++ +++|+.+++|+|||++.++.
T Consensus 24 ~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~ 101 (256)
T 3hve_A 24 SFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNE 101 (256)
T ss_dssp TCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHSCCCCC-
T ss_pred HHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCCCCcccH
Confidence 4788999999999999999999999999999999999987643 2333789999996 79999999999999999999
Q ss_pred hhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhccchhHHHHhhcCCchhHhhHHhCc---hhHHHHHHHHHhccC
Q 006841 98 YNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGI---TSRCIEAIASKVLTH 174 (629)
Q Consensus 98 ~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~sw~dsia~L~sC~~L~~~Ae~l~i---v~rcidsiA~ka~~d 174 (629)
+||..++.||.+|||++ |+..|+.||.+.+.+ .+|..++.+|+.+++ .+.|.+-|+.....
T Consensus 102 ~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~- 165 (256)
T 3hve_A 102 DTIQDVVQAADLLLLTD------LKTLCCEFLEGCIAA---------ENCIGIRDFALHYCLHHVHYLATEYLETHFRD- 165 (256)
T ss_dssp CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTCCS---------STTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHChHH------HHHHHHHHHHhhCCH---------hhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-
Confidence 99999999999999996 789999999999855 477778888888773 34455545432210
Q ss_pred CCCCcCccccCCCCCCCCCCCCCcccccCCCCCCchhhhhhccChhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcCC
Q 006841 175 PSKVSLSHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPN 254 (629)
Q Consensus 175 ~~~~~~s~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~eDl~~L~idlf~rVi~amk~~g~~~~~~Ig~al~~YA~r~L~~ 254 (629)
+ +-.++...|+.+....++..-.- .+..+..|- .-+.+|+-+
T Consensus 166 ---v------------------------------~~~~~f~~L~~~~l~~lL~~d~L-~v~~E~~v~----~av~~W~~~ 207 (256)
T 3hve_A 166 ---V------------------------------SSTEEFLELSPQKLKEVISLEKL-NVGNERYVF----EAVIRWIAH 207 (256)
T ss_dssp ---H------------------------------TTCHHHHSSCHHHHHHHHHCC--------CTTH----HHHTTTCCC
T ss_pred ---H------------------------------hCCcchhcCCHHHHHHHHccCCC-CCCCHHHHH----HHHHHHHHc
Confidence 0 00157778999998888764211 112223333 334678754
Q ss_pred cccCCCCCCCcCCCCCCCchhhhhHhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhhcCC-HHHHHHHHH
Q 006841 255 ISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNAS-SSSKMELAR 326 (629)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~LLP~ek~svsc~FL~~LLr~A~~l~as-~~cr~~Ler 326 (629)
-... ....-..|++.|= + ..+|..||...++.--.+..+ +.|+.-|++
T Consensus 208 ~~~~------------------R~~~~~~ll~~VR-f-----~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~ 256 (256)
T 3hve_A 208 DTEI------------------RKVHMKDVMSALW-V-----SGLDSSYLREQMLNEPLVREIVKECSNIPLS 256 (256)
T ss_dssp --CC------------------STTTHHHHHHHHH-H-----HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred CHHH------------------HHHHHHHHHHhCC-C-----CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence 1100 0011235666652 2 124555777777766666666 578877764
No 4
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.84 E-value=4.1e-21 Score=180.12 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=109.6
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhh
Q 006841 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYN 99 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~N 99 (629)
+++.++.+|||+|.|+|+.|++||.+|+++|+||++||.....+....+|.|++++ +++|+.+++|+||+++.++..|
T Consensus 27 ~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~l~~~Yt~~~~~~~~~ 104 (172)
T 3htm_A 27 GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKM 104 (172)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGT
T ss_pred HHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCC--HHHHHHHHHHHhCCCCCCcHHH
Confidence 46788999999999999999999999999999999999987554444799999996 7999999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhccchhHHHHhhcCCchhHhhHHhCc
Q 006841 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGI 159 (629)
Q Consensus 100 V~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~sw~dsia~L~sC~~L~~~Ae~l~i 159 (629)
+..++.+|++|+|++ |...|+.||.+.+.. .+|..++.+|+.+++
T Consensus 105 ~~~ll~~A~~~~~~~------l~~~c~~~l~~~l~~---------~n~~~~~~~A~~~~~ 149 (172)
T 3htm_A 105 ADDLLAAADKYALER------LKVMCEDALCSNLSV---------ENAAEILILADLHSA 149 (172)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHHHHHTCCT---------TTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcHH------HHHHHHHHHHHhCCH---------HHHHHHHHHHHHhCc
Confidence 999999999999995 789999999998844 467777778887763
No 5
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.83 E-value=4e-21 Score=171.46 Aligned_cols=102 Identities=18% Similarity=0.264 Sum_probs=91.3
Q ss_pred eeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhhH
Q 006841 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNI 100 (629)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~NV 100 (629)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+...+.....|.|++++ +++|+.+++|+||+++.++.+||
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~ll~~~Yt~~~~~~~~~~ 96 (120)
T 2if5_A 19 QRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVS--AEALTALMDFAYTATLTVSTANV 96 (120)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSC--HHHHHHHHHHHHHSCCCCCGGGH
T ss_pred HHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCC--HHHHHHHHHHHcCCCCccCHHHH
Confidence 6778999999999999999999999999999999999987544444789999986 79999999999999999999999
Q ss_pred HHHHHhHhhcCcchhhccccHHHHHHHHHH
Q 006841 101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFN 130 (629)
Q Consensus 101 ~~L~cAA~~LqMte~~~~gNLi~~ce~FL~ 130 (629)
..++.||++|+|++ |++.|+.||+
T Consensus 97 ~~ll~~A~~~~i~~------L~~~C~~~L~ 120 (120)
T 2if5_A 97 GDILSAARLLEIPA------VSHVCADLLD 120 (120)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHHHC
T ss_pred HHHHHHHHHhCCHH------HHHHHHHHhC
Confidence 99999999999996 7899999984
No 6
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.83 E-value=7.4e-21 Score=171.54 Aligned_cols=103 Identities=22% Similarity=0.384 Sum_probs=95.0
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeec-CCCCCCHHHHHHHHHHhhcCccccchh
Q 006841 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQL-PDFPGGIDAFELCAKFCYGITITLSAY 98 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L-~d~pGGaeaFell~~FcYg~~i~it~~ 98 (629)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.....+.. ..|.| ++++ +++|+.+++|+||+++.++..
T Consensus 22 ~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~-~~i~l~~~~~--~~~f~~ll~~~Ytg~~~~~~~ 98 (127)
T 1r29_A 22 RLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNL-SVINLDPEIN--PEGFNILLDFMYTSRLNLREG 98 (127)
T ss_dssp HHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTC-SEEECCTTSC--HHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCCC-CEEEeCCCCC--HHHHHHHHHHHcCCCcCcCHH
Confidence 3678899999999999999999999999999999999998755433 78999 8986 799999999999999999999
Q ss_pred hHHHHHHhHhhcCcchhhccccHHHHHHHHHHH
Q 006841 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNS 131 (629)
Q Consensus 99 NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~ 131 (629)
||..|+.||++|+|++ |++.|+.||.+
T Consensus 99 ~~~~ll~~A~~~~i~~------L~~~c~~~l~~ 125 (127)
T 1r29_A 99 NIMAVMATAMYLQMEH------VVDTCRKFIKA 125 (127)
T ss_dssp THHHHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHH------HHHHHHHHHHh
Confidence 9999999999999996 88999999975
No 7
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.83 E-value=2.7e-21 Score=173.23 Aligned_cols=100 Identities=21% Similarity=0.147 Sum_probs=91.1
Q ss_pred eeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhhH
Q 006841 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNI 100 (629)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~NV 100 (629)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||.... . .+|.|++++ +++|+.+++|+|||++.++.+||
T Consensus 18 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~---~-~~i~l~~~~--~~~f~~ll~~iYtg~~~~~~~~v 91 (119)
T 3b84_A 18 QREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS---G-GSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNR 91 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT---C-CCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC---C-CeEEeCCCC--HHHHHHHHHHHcCCCCccCHHHH
Confidence 67889999999999999999999999999999999998755 2 689999986 79999999999999999999999
Q ss_pred HHHHHhHhhcCcchhhccccHHHHHHHHHHHh
Q 006841 101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFNSC 132 (629)
Q Consensus 101 ~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~ 132 (629)
..++.||++|||++ |++.|+.||.+.
T Consensus 92 ~~ll~~A~~~~i~~------L~~~C~~~l~~~ 117 (119)
T 3b84_A 92 DQVLLAARELRVPE------AVELCQSFKPKT 117 (119)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHCC---
T ss_pred HHHHHHHHHhCcHH------HHHHHHHHHHHc
Confidence 99999999999996 889999999764
No 8
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.83 E-value=1.3e-21 Score=178.57 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=92.6
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhh
Q 006841 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYN 99 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~N 99 (629)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.....+....+|.|++++ +++|+.+++|+||+++.++..|
T Consensus 18 ~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~~~~~l~~~Y~~~~~~~~~~ 95 (145)
T 4eoz_A 18 GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKM 95 (145)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGT
T ss_pred HHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCC--HHHHHHHHHhhccCccCCcHHH
Confidence 46788999999999999999999999999999999999986544333689999996 7999999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhccchhHHHHhhcCCchhHhhHHhCc
Q 006841 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGI 159 (629)
Q Consensus 100 V~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~sw~dsia~L~sC~~L~~~Ae~l~i 159 (629)
+..++.+|++|+|++ |+..|+.||.+.+.. .+|..++.+|+.+++
T Consensus 96 ~~~ll~~A~~~~~~~------l~~~c~~~l~~~l~~---------~n~~~~l~~A~~~~~ 140 (145)
T 4eoz_A 96 ADDLLAAADKYALER------LKVMCEDALCSNLSV---------ENAAEILILADLHSA 140 (145)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHCC-------------------------------
T ss_pred HHHHHHHHHHhCHHH------HHHHHHHHHHHhCCH---------HHHHHHHHHHHHhCH
Confidence 999999999999986 789999999998844 588889999988775
No 9
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.83 E-value=5.3e-21 Score=175.57 Aligned_cols=107 Identities=20% Similarity=0.291 Sum_probs=96.9
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecC-CCCCCHHHHHHHHHHhhcCccccchh
Q 006841 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLP-DFPGGIDAFELCAKFCYGITITLSAY 98 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~-d~pGGaeaFell~~FcYg~~i~it~~ 98 (629)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.....+. ..|.|+ +++ +++|+.+++|+||+++.++.+
T Consensus 29 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~--~~~~~~lL~~~Ytg~~~i~~~ 104 (138)
T 2z8h_A 29 DQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVT--VKGFEPLIQFAYTAKLILSKD 104 (138)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSC--HHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCC--HHHHHHHHHHhcCCCcccCHH
Confidence 467889999999999999999999999999999999999875442 578995 886 799999999999999999999
Q ss_pred hHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhcc
Q 006841 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHG 136 (629)
Q Consensus 99 NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~s 136 (629)
||..|+.||++|||++ |++.|+.||.+.+..+
T Consensus 105 ~v~~ll~~A~~~~i~~------L~~~C~~~l~~~l~~s 136 (138)
T 2z8h_A 105 NVDEVCRCVEFLSVHN------IEESCFQFLKFKFLDS 136 (138)
T ss_dssp THHHHHHHHHHHTCGG------GHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHHHHhCCHH------HHHHHHHHHHHhcccc
Confidence 9999999999999996 7899999999887543
No 10
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.83 E-value=7.5e-21 Score=168.98 Aligned_cols=99 Identities=20% Similarity=0.285 Sum_probs=90.3
Q ss_pred eeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecC--CCCCCHHHHHHHHHHhhcCccccchh
Q 006841 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLP--DFPGGIDAFELCAKFCYGITITLSAY 98 (629)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~--d~pGGaeaFell~~FcYg~~i~it~~ 98 (629)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||.... . ..|.|+ +++ +++|+.+++|+||+++.++.+
T Consensus 16 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~---~-~~i~l~~~~~~--~~~f~~ll~~~Yt~~~~~~~~ 89 (116)
T 2vpk_A 16 QREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTS---E-NNVFLDQSQVK--ADGFQKLLEFIYTGTLNLDSW 89 (116)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCC---C-SCEECCTTTCC--HHHHHHHHHHHHHSCCCCCTT
T ss_pred HHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCCC---C-CeEEeecCCCC--HHHHHHHHHHHcCCCcccCHH
Confidence 67789999999999999999999999999999999998762 2 567777 886 799999999999999999999
Q ss_pred hHHHHHHhHhhcCcchhhccccHHHHHHHHHHH
Q 006841 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNS 131 (629)
Q Consensus 99 NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~ 131 (629)
||..++.||++|||++ |++.|+.||.+
T Consensus 90 ~v~~ll~~A~~~~i~~------L~~~C~~~l~~ 116 (116)
T 2vpk_A 90 NVKEIHQAADYLKVEE------VVTKCKIKMED 116 (116)
T ss_dssp THHHHHHHHHHTTCHH------HHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCHH------HHHHHHHHHhC
Confidence 9999999999999985 89999999863
No 11
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.82 E-value=9.6e-21 Score=169.92 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=93.2
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhh
Q 006841 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYN 99 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~N 99 (629)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. . .+|.|++++ +++|+.+++|+||+++.++.+|
T Consensus 21 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~----~-~~i~l~~~~--~~~f~~ll~~~Ytg~~~~~~~~ 93 (121)
T 1buo_A 21 QMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN----S-QHYTLDFLS--PKTFQQILEYAYTATLQAKAED 93 (121)
T ss_dssp HHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC----C-SEEEECSSC--HHHHHHHHHHHHHSCCCCCGGG
T ss_pred HHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC----C-cEEEeCCCC--HHHHHHHHHhhcCCCcCCCHHH
Confidence 36788999999999999999999999999999999999863 2 589999997 7999999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHHHHhh
Q 006841 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 100 V~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
|..++.||++|||++ |++.|+.||.+.+
T Consensus 94 ~~~ll~~A~~~~i~~------L~~~c~~~l~~~I 121 (121)
T 1buo_A 94 LDDLLYAAEILEIEY------LEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHHTCHH------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCHH------HHHHHHHHHHHhC
Confidence 999999999999995 8899999998753
No 12
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.82 E-value=3.6e-21 Score=176.49 Aligned_cols=103 Identities=20% Similarity=0.168 Sum_probs=90.4
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhh
Q 006841 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYN 99 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~N 99 (629)
.++.++.+|||+|.|+|+.|++||.||+++|+||++||.... . .+|.|++++ +++|+.+++|+||+++.++.+|
T Consensus 18 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~---~-~~i~l~~~~--~~~f~~lL~fiYtg~~~i~~~~ 91 (135)
T 2yy9_A 18 KQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT---G-GSVVLPAGF--AEIFGLLLDFFYTGHLALTSGN 91 (135)
T ss_dssp HHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGG--HHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC---C-CeEEeCCCC--HHHHHHHHHHHhCCCCCCCHHH
Confidence 367889999999999999999999999999999999998755 2 579999986 7999999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhh
Q 006841 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCIL 134 (629)
Q Consensus 100 V~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~ 134 (629)
|..|+.||++|||.+ |++.|+.||.+.+.
T Consensus 92 v~~ll~~A~~l~i~~------L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 92 RDQVLLAAKELRVPE------AVELCQSFQPQTSV 120 (135)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHCCC----
T ss_pred HHHHHHHHHHhCcHH------HHHHHHHHHHHhcc
Confidence 999999999999995 88999999988774
No 13
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=174.67 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=89.9
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCC--CCCceeecCCCCCCHHHHHHHHHHhhcCccccch
Q 006841 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPES--SQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA 97 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~--~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~ 97 (629)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.....+ ....+|.|++++ +++|+.+++|+||+++.++.
T Consensus 40 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~--~~~f~~lL~fiYtg~~~i~~ 117 (144)
T 2ppi_A 40 SFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNE 117 (144)
T ss_dssp HTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSC--HHHHHHHHHHHTTSCCCCCT
T ss_pred HHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCC--HHHHHHHHHHHhCCCCCCCH
Confidence 36788999999999999999999999999999999999875432 223689999997 79999999999999999999
Q ss_pred hhHHHHHHhHhhcCcchhhccccHHHHHHHHHH
Q 006841 98 YNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFN 130 (629)
Q Consensus 98 ~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~ 130 (629)
+||..|+.||++|||++ |++.|+.||.
T Consensus 118 ~~v~~ll~~A~~l~i~~------L~~~C~~~L~ 144 (144)
T 2ppi_A 118 DTIQDVVQAADLLLLTD------LKTLCCEFLE 144 (144)
T ss_dssp TTHHHHHHHHHHTTCHH------HHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCcHH------HHHHHHHHhC
Confidence 99999999999999996 7899999974
No 14
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.81 E-value=1.3e-20 Score=168.86 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=89.6
Q ss_pred eeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhhH
Q 006841 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNI 100 (629)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~NV 100 (629)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||++. . ..|.|++++ +++|+.+++|+||+++.++.+||
T Consensus 21 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~-~~i~l~~~~--~~~f~~ll~~~Ytg~~~i~~~~~ 93 (119)
T 2q81_A 21 QRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ----K-DVVHLDISN--AAGLGQVLEFMYTAKLSLSPENV 93 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC----C-SGGGGGGCC--HHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC----C-CEEEeCCCC--HHHHHHHHHHHcCCCCccCHHHH
Confidence 6678999999999999999999999999999999999863 2 468888885 79999999999999999999999
Q ss_pred HHHHHhHhhcCcchhhccccHHHHHHHHHH
Q 006841 101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFN 130 (629)
Q Consensus 101 ~~L~cAA~~LqMte~~~~gNLi~~ce~FL~ 130 (629)
..++.||++|||++ |++.|+.||.
T Consensus 94 ~~ll~~A~~l~i~~------L~~~C~~~l~ 117 (119)
T 2q81_A 94 DDVLAVATFLQMQD------IITACHALKS 117 (119)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHHHT
T ss_pred HHHHHHHHHhCCHH------HHHHHHHHHh
Confidence 99999999999996 7899999985
No 15
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.81 E-value=8.8e-21 Score=171.97 Aligned_cols=101 Identities=22% Similarity=0.332 Sum_probs=85.3
Q ss_pred eeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecC-CCCCCHHHHHHHHHHhhcCccccchhh
Q 006841 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLP-DFPGGIDAFELCAKFCYGITITLSAYN 99 (629)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~-d~pGGaeaFell~~FcYg~~i~it~~N 99 (629)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||... .. .+|.|+ +++ +++|+.+++|+||+++.++.+|
T Consensus 27 l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~---~~-~~i~l~~~~~--~~~f~~ll~~iYtg~~~i~~~~ 100 (129)
T 3ga1_A 27 QRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---RS-AVVELPAAVQ--PQSFQQILSFCYTGRLSMNVGD 100 (129)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC---CC-SEEECCTTCC--HHHHHHHHHHHHHSEEECCTTT
T ss_pred HHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC---CC-CEEEECCCCC--HHHHHHHHHHHhCCccccCHHH
Confidence 5678999999999999999999999999999999999876 22 689997 886 7999999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHHHHhh
Q 006841 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 100 V~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
|..++.||++|||++ |++.|+.||.+..
T Consensus 101 ~~~ll~~A~~~~i~~------l~~~C~~~L~~~~ 128 (129)
T 3ga1_A 101 QDLLMYTAGFLQIQE------IMEKGTEFFLKVS 128 (129)
T ss_dssp HHHHHHHHHHTTBTT------SSCC---------
T ss_pred HHHHHHHHHHhCCHH------HHHHHHHHHHHhc
Confidence 999999999999996 6789999998753
No 16
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.81 E-value=6e-21 Score=171.68 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=90.4
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCC-CCCCHHHHHHHHHHhhcCccccchh
Q 006841 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPD-FPGGIDAFELCAKFCYGITITLSAY 98 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d-~pGGaeaFell~~FcYg~~i~it~~ 98 (629)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.....+ . .+|.|++ ++ +++|+.+++|+||+++.++.+
T Consensus 25 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-~-~~i~l~~~~~--~~~f~~~l~~iYtg~~~~~~~ 100 (125)
T 3ohu_A 25 DQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN-D-LVVSLPEEVT--ARGFGPLLQFAYTAKLLLSRE 100 (125)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS-S-CEEECCTTCC--HHHHHHHHHHHTTSEEEECTT
T ss_pred HHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC-C-cEEEeCCCCC--HHHHHHHHHhHcCCceEECHH
Confidence 36788999999999999999999999999999999999987554 3 6899998 86 799999999999999999999
Q ss_pred hHHHHHHhHhhcCcchhhccccHHHHHHHHH
Q 006841 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFF 129 (629)
Q Consensus 99 NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL 129 (629)
||..++.||++|||.+ |++.|+.||
T Consensus 101 ~v~~ll~~A~~l~i~~------L~~~C~~~L 125 (125)
T 3ohu_A 101 NIREVIRCAEFLRMHN------LEDSCFSFL 125 (125)
T ss_dssp THHHHHHHHHHHTBSS------CTTSSCCCC
T ss_pred HHHHHHHHHHHhCCHH------HHHHHHHhC
Confidence 9999999999999996 567777764
No 17
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.80 E-value=1e-20 Score=170.71 Aligned_cols=101 Identities=20% Similarity=0.295 Sum_probs=89.3
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecC-CCCCCHHHHHHHHHHhhcCccccchh
Q 006841 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLP-DFPGGIDAFELCAKFCYGITITLSAY 98 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~-d~pGGaeaFell~~FcYg~~i~it~~ 98 (629)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+...+. ..|.|+ +++ +++|+.+++|+||+++.++.+
T Consensus 22 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~--~~~f~~lL~~iYtg~~~i~~~ 97 (124)
T 2ihc_A 22 DQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVT--VKGFEPLIQFAYTAKLILSKE 97 (124)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSC--HHHHHHHHHHHHHSEEEEETT
T ss_pred HHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcC--HHHHHHHHHHhcCCCcccCHH
Confidence 367889999999999999999999999999999999999875433 578994 886 799999999999999999999
Q ss_pred hHHHHHHhHhhcCcchhhccccHHHHHHHHHH
Q 006841 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFFN 130 (629)
Q Consensus 99 NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~ 130 (629)
||..++.||++|||++ |++.|+.||.
T Consensus 98 ~v~~ll~~A~~~~~~~------L~~~C~~~l~ 123 (124)
T 2ihc_A 98 NVDEVCKCVEFLSVHN------IEESCFQFLK 123 (124)
T ss_dssp THHHHHHHHHHHTBSS------CCGGGGGTC-
T ss_pred HHHHHHHHHHHHCCHH------HHHHHHHHHh
Confidence 9999999999999996 6778998875
No 18
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.80 E-value=3.2e-20 Score=167.56 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=85.2
Q ss_pred eeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhhH
Q 006841 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNI 100 (629)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~NV 100 (629)
.+.++.+|||+|.|+|+.|++||.+||++|+||++ .. .+|+|++++ +++|+.+++|+|||++.|+.+||
T Consensus 24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~--------~~-~~i~l~~v~--~~~f~~ll~fiYtg~~~i~~~~v 92 (119)
T 3m5b_A 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR--------RG-QWALGEGIS--PSTFAQLLNFVYGESVELQPGEL 92 (119)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC--------CE-EEECCSSCC--HHHHHHHHHHHTTCCEEECGGGH
T ss_pred HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc--------CC-CEEEeCCCC--HHHHHHHHHHHcCCCcCcCHHHH
Confidence 35679999999999999999999999999999985 12 689999996 79999999999999999999999
Q ss_pred HHHHHhHhhcCcchhhccccHHHHHHHHHHH
Q 006841 101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFNS 131 (629)
Q Consensus 101 ~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~ 131 (629)
..++.||++|||.+ |++.|+.++.+
T Consensus 93 ~~ll~aA~~l~i~~------l~~~C~~~~~~ 117 (119)
T 3m5b_A 93 RPLQEAARALGVQS------LEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHHC--
T ss_pred HHHHHHHHHhCCHH------HHHHHHHHHhh
Confidence 99999999999995 78999999875
No 19
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.76 E-value=4.7e-19 Score=182.06 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=111.5
Q ss_pred eeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhhH
Q 006841 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNI 100 (629)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~NV 100 (629)
++.++.+|||+|.|+|++|++||.+||++|+||++||.....+....+|.|++++ +++|+.+++|+||+.+.++..||
T Consensus 168 l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~L~~iYt~~~~~~~~~~ 245 (312)
T 3hqi_A 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMA 245 (312)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSC--HHHHHHHHHHHHHSCCTTHHHHH
T ss_pred HHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCC--HHHHHHHHHhhcCCCCCChHHHH
Confidence 4567899999999999999999999999999999999987544444799999996 79999999999999999999999
Q ss_pred HHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhccchhHHHHhhcCCchhHhhHHhC---chhHHHHHHHH
Q 006841 101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLG---ITSRCIEAIAS 169 (629)
Q Consensus 101 ~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~sw~dsia~L~sC~~L~~~Ae~l~---iv~rcidsiA~ 169 (629)
..|+.||++++|.. |+..|+.||.+.+.. .+|..++.+|+.++ +..+|++-|+.
T Consensus 246 ~~ll~~A~~~~~~~------l~~~c~~~l~~~~~~---------~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 302 (312)
T 3hqi_A 246 DDLLAAADKYALER------LKVMCEDALCSNLSV---------ENAAEILILADLHSADQLKTQAVDFINY 302 (312)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHHHHTTCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHH------HHHHHHHHHHccCCH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999985 889999999988744 46777777888774 45566666654
No 20
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.74 E-value=2.1e-18 Score=154.34 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=82.0
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCcc-ccchh
Q 006841 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITI-TLSAY 98 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i-~it~~ 98 (629)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||... . .+|.|++++ +++|+.+++|+|||++ .++.+
T Consensus 24 ~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~----~-~~i~l~~~~--~~~f~~~l~~~Ytg~~~~~~~~ 96 (116)
T 3fkc_A 24 EQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA----G-QVVELSFIR--AEIFAEILNYIYSSKIVRVRSD 96 (116)
T ss_dssp HHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC----C-SEEEECSSC--HHHHHHHHHHHTTSCCCSCCHH
T ss_pred HHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC----C-CEEEeCCCC--HHHHHHHHHhhcCCCcCCCCHH
Confidence 36778999999999999999999999999999999999875 2 589999996 7999999999999999 79999
Q ss_pred hHHHHHHhHhhcCcch
Q 006841 99 NIVAARCAAEYLQMTE 114 (629)
Q Consensus 99 NV~~L~cAA~~LqMte 114 (629)
||..++.||++|||+.
T Consensus 97 ~~~~ll~~A~~l~i~~ 112 (116)
T 3fkc_A 97 LLDELIKSGQLLGVKF 112 (116)
T ss_dssp HHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCccc
Confidence 9999999999999986
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.37 E-value=7.9e-13 Score=125.15 Aligned_cols=97 Identities=12% Similarity=0.200 Sum_probs=82.9
Q ss_pred EEEEE-cCEEEEecccccccCCHHHHHhhcC-CCC-CCCCceeecCCCCCCHHHHHHHHHHhhcCc--------------
Q 006841 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSE-SPE-SSQHQIVQLPDFPGGIDAFELCAKFCYGIT-------------- 92 (629)
Q Consensus 30 V~I~V-~g~~F~lHK~vLas~S~YFr~Lft~-~~~-~~~~~~V~L~d~pGGaeaFell~~FcYg~~-------------- 92 (629)
|+|.. +|+.|.+||.+ |++|+||+.||.. +.. +.....|.|++|+ +.+++.+++|||+.+
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~--~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSC--HHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCcc--HHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 67764 89999999999 9999999999987 433 2333689999997 599999999999988
Q ss_pred ------------cccchhhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhc
Q 006841 93 ------------ITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILH 135 (629)
Q Consensus 93 ------------i~it~~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~ 135 (629)
+.++..|+..|+.||.||+|.. |++.|+.|+...+..
T Consensus 80 ~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~------Lld~~c~~va~~i~g 128 (159)
T 2ast_A 80 RTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG------LLDVTCKTVANMIKG 128 (159)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHSS
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHcC
Confidence 8999999999999999999985 899999999998843
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.15 E-value=5.8e-11 Score=103.66 Aligned_cols=80 Identities=10% Similarity=0.168 Sum_probs=65.5
Q ss_pred EEEEE-cCEEEEecccccccCCHHHHHhhcCC--CCCCCCceeecCCCCCCHHHHHHHHHHhh-----c---Cccc---c
Q 006841 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSES--PESSQHQIVQLPDFPGGIDAFELCAKFCY-----G---ITIT---L 95 (629)
Q Consensus 30 V~I~V-~g~~F~lHK~vLas~S~YFr~Lft~~--~~~~~~~~V~L~d~pGGaeaFell~~FcY-----g---~~i~---i 95 (629)
|+|+- +|+.|.+||.+ |++|+||++||... ..+.....|.|++|+ +.+++.+++||| + +.|. |
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~--~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSC--HHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCC--HHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 44543 78999999999 99999999999873 223333689999997 699999999999 5 6787 9
Q ss_pred chhhHHHHHHhHhhcCc
Q 006841 96 SAYNIVAARCAAEYLQM 112 (629)
Q Consensus 96 t~~NV~~L~cAA~~LqM 112 (629)
+.+|+..|+.||+||+.
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 99999999999999983
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.07 E-value=4.2e-10 Score=104.73 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=81.1
Q ss_pred EEEEE-cCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCc----------------
Q 006841 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGIT---------------- 92 (629)
Q Consensus 30 V~I~V-~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~---------------- 92 (629)
|+|+. +|+.|.+|+.+ |..|+||+.|+.... . ..|.|++|+ +.+++.+++|||..+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~-~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG---M-DPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC---C-SSEECTTCC--HHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC---C-CceecCCcC--HHHHHHHHHHHHHhccCCCccccccccccch
Confidence 66766 78999999998 899999999998642 2 579999997 599999999999765
Q ss_pred ----------cccchhhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhh
Q 006841 93 ----------ITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 93 ----------i~it~~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
+.++..++..|+.||+||+|.. |++.||.|+...+
T Consensus 77 ~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~------Lldl~c~~vA~~i 121 (141)
T 1fs1_B 77 DDIPVWDQEFLKVDQGTLFELILAANYLDIKG------LLDVTCKTVANMI 121 (141)
T ss_dssp ----HHHHHHTCSCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHH
Confidence 7899999999999999999995 8999999999988
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.85 E-value=5.1e-10 Score=106.22 Aligned_cols=92 Identities=12% Similarity=0.232 Sum_probs=50.9
Q ss_pred EEEEE-cCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCc----------------
Q 006841 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGIT---------------- 92 (629)
Q Consensus 30 V~I~V-~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~---------------- 92 (629)
|+|+. +|+.|.+|+.+ |..|+||+.||..... . ..|.|++|+ +.+++.+++|||..+
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~--~-~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 79 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDCV--D-NGVPLPNVT--SKILAKVIEYCKRHVEAAASKAEAVEGAATS 79 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCTTSC--HHHHHHHHHC---------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccCC--C-CceeCCcCc--HHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 66664 79999999998 8999999999986532 2 479999997 599999999999875
Q ss_pred -----------cccchhhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhh
Q 006841 93 -----------ITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 93 -----------i~it~~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
+.++..++..|+.||.||+|.. |++.||.|+...+
T Consensus 80 ~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~------Lldl~c~~vA~~i 125 (160)
T 2p1m_A 80 DDDLKAWDADFMKIDQATLFELILAANYLNIKN------LLDLTCQTVADMI 125 (160)
T ss_dssp ---------------------CHHHHHHTTCHH------HHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHH
Confidence 5789999999999999999995 8999999999988
No 25
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.29 E-value=1.4e-06 Score=76.56 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=66.3
Q ss_pred EEEEE-cCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCc--------------cc
Q 006841 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGIT--------------IT 94 (629)
Q Consensus 30 V~I~V-~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~--------------i~ 94 (629)
|+|.- +|+.|.+|+.+ |..|++|+.|+..+.+... ..|.|++|+ +.+++.+++|||.-+ ..
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~-~~Iplp~V~--~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~ 81 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESK-GRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFE 81 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCT-TEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCC-CceecCCcC--HHHHHHHHHHHHHhcccCCCccccccCCCcc
Confidence 66766 89999999996 8999999999987443222 589999997 599999999999633 36
Q ss_pred cchhhHHHHHHhHhhcCc
Q 006841 95 LSAYNIVAARCAAEYLQM 112 (629)
Q Consensus 95 it~~NV~~L~cAA~~LqM 112 (629)
+....+..|+.||+||++
T Consensus 82 vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 82 IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 888999999999999985
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.21 E-value=1.6e-06 Score=75.58 Aligned_cols=80 Identities=9% Similarity=0.153 Sum_probs=64.1
Q ss_pred EEEEE-cCEEEEecccccccCCHHHHHhhcCC-C-CCCCCceeecCCCCCCHHHHHHHHHHhhcCc-----------ccc
Q 006841 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSES-P-ESSQHQIVQLPDFPGGIDAFELCAKFCYGIT-----------ITL 95 (629)
Q Consensus 30 V~I~V-~g~~F~lHK~vLas~S~YFr~Lft~~-~-~~~~~~~V~L~d~pGGaeaFell~~FcYg~~-----------i~i 95 (629)
|+|.- +|+.|.+|+.+ |..|++|+.|+... . .+.....|.|++|+ +.+++.+++|||.-+ ..+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~i~~w~v 79 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCC--HHHHHHHHHHHHHccccCCCcccCCCccc
Confidence 55655 88999999996 89999999999863 2 22222589999997 599999999999633 368
Q ss_pred chhhHHHHHHhHhhcCc
Q 006841 96 SAYNIVAARCAAEYLQM 112 (629)
Q Consensus 96 t~~NV~~L~cAA~~LqM 112 (629)
....+..|+.||+||++
T Consensus 80 d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CTTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 89999999999999985
No 27
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.18 E-value=4.4e-06 Score=79.98 Aligned_cols=96 Identities=13% Similarity=0.222 Sum_probs=76.8
Q ss_pred eEEEEE-cCEEEEecccccccCCHHHHHhhcCCCC----CCCCceeecCCCCCCHHHHHHHHHHhhcCc-----------
Q 006841 29 DLIIQV-KGTRYLLHKFPLLSKCLRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGIT----------- 92 (629)
Q Consensus 29 DV~I~V-~g~~F~lHK~vLas~S~YFr~Lft~~~~----~~~~~~V~L~d~pGGaeaFell~~FcYg~~----------- 92 (629)
-|+|+- +|+.|.+++.+ |..|++++.|+..... +.....|.|++|+ +.+++.|++|||--+
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVR--SSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCC--HHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCC--HHHHHHHHHHHHHcccCCCccccccc
Confidence 455654 68899999997 8889999999986432 1212579999997 599999999999532
Q ss_pred --------------cccchhhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhh
Q 006841 93 --------------ITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 93 --------------i~it~~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
+.+....+..|+.||.||+|.. |++.||.++...+
T Consensus 85 ~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~------Lldl~c~~vA~~i 133 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKP------LLDAGCKVVAEMI 133 (169)
T ss_dssp ---CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHHH
Confidence 4678899999999999999995 8999999998877
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.63 E-value=5.8e-05 Score=67.79 Aligned_cols=81 Identities=9% Similarity=0.130 Sum_probs=63.7
Q ss_pred eEEEE-EcCEEEEecccccccCCHHHHHhhcCCC--CCCCCceeecCCCCCCHHHHHHHHHHhhcCc-----------cc
Q 006841 29 DLIIQ-VKGTRYLLHKFPLLSKCLRLQRLCSESP--ESSQHQIVQLPDFPGGIDAFELCAKFCYGIT-----------IT 94 (629)
Q Consensus 29 DV~I~-V~g~~F~lHK~vLas~S~YFr~Lft~~~--~~~~~~~V~L~d~pGGaeaFell~~FcYg~~-----------i~ 94 (629)
-|+|+ -+|+.|.+++. .|..|+.++.|+.... .+.....|.|++|+ +.+++.+++|||--+ ..
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCCCCC--HHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 35665 58899999998 5788999999998632 22222579999997 599999999998532 36
Q ss_pred cchhhHHHHHHhHhhcCc
Q 006841 95 LSAYNIVAARCAAEYLQM 112 (629)
Q Consensus 95 it~~NV~~L~cAA~~LqM 112 (629)
+...++..|+.||+||++
T Consensus 95 vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 IAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 889999999999999986
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.47 E-value=0.00045 Score=61.10 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=71.6
Q ss_pred eEEEEEcCEEEEecccccccCC-HHHHHhhcCCCC----CCCCceeecCCCCCCHHHHHHHHHHhhcCccccch-hhHHH
Q 006841 29 DLIIQVKGTRYLLHKFPLLSKC-LRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-YNIVA 102 (629)
Q Consensus 29 DV~I~V~g~~F~lHK~vLas~S-~YFr~Lft~~~~----~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~-~NV~~ 102 (629)
=|+|.|||+.|...+..|.... .+|.+||..... .+...++-| |- .|..|+.|++|..+|++.+.. -.+..
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DR--dp~~F~~IL~~lr~g~l~~p~~~~~~~ 83 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DR--DPTYFGPVLNYLRHGKLVINKDLAEEG 83 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CS--CHHHHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cC--ChHHHHHHHHHhCCCeeCCCCCCCHHH
Confidence 4788999999999999999875 578999875421 112245555 33 479999999999999998754 35678
Q ss_pred HHHhHhhcCcchhhccccHHHHHHHHHH
Q 006841 103 ARCAAEYLQMTEDVEKGNLIYKIEVFFN 130 (629)
Q Consensus 103 L~cAA~~LqMte~~~~gNLi~~ce~FL~ 130 (629)
++..|+|.++++ |++.|+.-+.
T Consensus 84 l~~Ea~fy~l~~------L~~~l~~~i~ 105 (107)
T 3drz_A 84 VLEEAEFYNITS------LIKLVKDKIR 105 (107)
T ss_dssp HHHHHHHHTCHH------HHHHHHHHHH
T ss_pred HHHHHHHCCCHH------HHHHHHHHHh
Confidence 999999999996 7777776554
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=95.65 E-value=0.036 Score=54.62 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=71.4
Q ss_pred eEEEEEcCEEEEecccccccCC-HHHHHhhcCCCC----CCCCceeecCCCCCCHHHHHHHHHHhhcCccccch-hhHHH
Q 006841 29 DLIIQVKGTRYLLHKFPLLSKC-LRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-YNIVA 102 (629)
Q Consensus 29 DV~I~V~g~~F~lHK~vLas~S-~YFr~Lft~~~~----~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~-~NV~~ 102 (629)
=|+|.|||+.|...+..|.... .+|.+||..... .+...++-|. - .|..|+.|++|.-+|++.+.. -.+..
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFID-R--DP~~F~~ILnyLRtG~L~lP~~~~~~~ 89 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID-R--DPTYFGPVLNYLRHGKLVINKDLAEEG 89 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEEC-S--CSTTHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEec-C--ChHHHHHHHHHhcCCccCCCCCCCHHH
Confidence 4678999999999999998764 488999875311 1112456654 2 357999999999999998744 35578
Q ss_pred HHHhHhhcCcchhhccccHHHHHHHHHHH
Q 006841 103 ARCAAEYLQMTEDVEKGNLIYKIEVFFNS 131 (629)
Q Consensus 103 L~cAA~~LqMte~~~~gNLi~~ce~FL~~ 131 (629)
++.-|+|+++.+ |+..|..-+.+
T Consensus 90 l~eEA~FygL~~------Lv~~l~~~i~e 112 (202)
T 3drx_A 90 VLEEAEFYNITS------LIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHHHH
T ss_pred HHHHHHHCCcHH------HHHHHHHHHHH
Confidence 999999999986 77788777754
No 31
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=94.21 E-value=0.023 Score=51.12 Aligned_cols=83 Identities=16% Similarity=0.054 Sum_probs=62.4
Q ss_pred EEEEEcCEEEEecccccccCC-HHHHHhhcCCC-CCCCCceeecCCCCCCHHHHHHHHHHhhcCccccch-hhHHHHHHh
Q 006841 30 LIIQVKGTRYLLHKFPLLSKC-LRLQRLCSESP-ESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-YNIVAARCA 106 (629)
Q Consensus 30 V~I~V~g~~F~lHK~vLas~S-~YFr~Lft~~~-~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~-~NV~~L~cA 106 (629)
|+|.|||+.|...+..|...- ..|.+|+.... -.....++-|.- .|..|+.|++|.-+|++.+.. -.+..++.-
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiDR---dp~~F~~ILnylR~G~l~~p~~~~~~~~~~E 83 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDR---HPGVFAQIINYYRSGKLHYPTDVCGPLFEEE 83 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECS---CTTTHHHHHHHHHHSCBCCCSSSCHHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEec---ChHHHHHHHHHhcCCCCCCCCcccHHHHHHH
Confidence 789999999999999988763 34666765421 011124666642 357999999999999998765 467899999
Q ss_pred HhhcCcchh
Q 006841 107 AEYLQMTED 115 (629)
Q Consensus 107 A~~LqMte~ 115 (629)
|+|.++.+.
T Consensus 84 a~fy~i~~~ 92 (115)
T 3kvt_A 84 LEFWGLDSN 92 (115)
T ss_dssp HHHHTCCGG
T ss_pred HHHhCCChH
Confidence 999999985
No 32
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=91.88 E-value=0.19 Score=45.71 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=57.5
Q ss_pred eEEEEEcCEEEEecccccccCCHHHHHhhcCCCC----CCCCceeecCCCCCCHHHHHHHHHHhhcCccccch-hhHHHH
Q 006841 29 DLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-YNIVAA 103 (629)
Q Consensus 29 DV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~----~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~-~NV~~L 103 (629)
=|+|.|||+.|..-+..|...-+- |+..... .....++-|. -.+..|+.|++|.-+|++.+.. ..+..+
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~S---~L~~~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnflR~G~l~~p~~~~~~~l 87 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPDT---LLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLHYPRYECISAY 87 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTS---STTSSGGGGTBCSSSCSEEEC---SCHHHHHHHHHHHHHSCBCCCTTSCHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCCc---eecccCCcccccCCCCcEEEc---CChHHHHHHHHHHhcCCCCCCCCcCHHHH
Confidence 478899999999988877654221 2222100 0111455553 2479999999999999998754 358999
Q ss_pred HHhHhhcCcchh
Q 006841 104 RCAAEYLQMTED 115 (629)
Q Consensus 104 ~cAA~~LqMte~ 115 (629)
+.-|+|+++.+.
T Consensus 88 ~~Ea~fy~i~~l 99 (124)
T 1s1g_A 88 DDELAFYGILPE 99 (124)
T ss_dssp HHHHHHTTCCGG
T ss_pred HHHHHHcCCChH
Confidence 999999999975
No 33
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=91.37 E-value=0.2 Score=43.80 Aligned_cols=82 Identities=11% Similarity=0.072 Sum_probs=58.4
Q ss_pred EEEEEcCEEEEecccccccCC-HHHHHhhcCC--CCCCCCceeecCCCCCCHHHHHHHHHHhhc-Cccccch-hhHHHHH
Q 006841 30 LIIQVKGTRYLLHKFPLLSKC-LRLQRLCSES--PESSQHQIVQLPDFPGGIDAFELCAKFCYG-ITITLSA-YNIVAAR 104 (629)
Q Consensus 30 V~I~V~g~~F~lHK~vLas~S-~YFr~Lft~~--~~~~~~~~V~L~d~pGGaeaFell~~FcYg-~~i~it~-~NV~~L~ 104 (629)
|+|.|||+.|...+..|...- ..|-+|+... ..... .++-|.- .|..|+.|++|.-+ |++.+.. ..+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~-~eyFiDR---dp~~F~~ILnflR~~G~l~~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLR-NEYFFDR---NRPSFDAILYFYQSGGRLRRPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTT-TEEEECS---CSTTHHHHHHHHHTTSCCCCCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCc-eeEEEcC---ChHHHHHHHHHHhcCCcccCCCCCCHHHHH
Confidence 789999999999998886541 2344444321 11112 4666642 34799999999998 8987643 4678999
Q ss_pred HhHhhcCcchh
Q 006841 105 CAAEYLQMTED 115 (629)
Q Consensus 105 cAA~~LqMte~ 115 (629)
.-|+|.++.+.
T Consensus 79 ~Ea~fy~i~~~ 89 (100)
T 1t1d_A 79 EEIKFYELGEN 89 (100)
T ss_dssp HHHHHTTCCHH
T ss_pred HHHHHcCCCHH
Confidence 99999999974
No 34
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=90.15 E-value=0.13 Score=45.38 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=56.9
Q ss_pred EEEEEcCEEEEecccccccCCHHHHHhhcCCCC----CCCCceeecCCCCCCHHHHHHHHHHhhcCccccch-hhHHHHH
Q 006841 30 LIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-YNIVAAR 104 (629)
Q Consensus 30 V~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~----~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~-~NV~~L~ 104 (629)
|+|.|||+.|...+..|...-+ .|+..... .....++-|.- .|..|+.|++|.-+|++.+.. ..+..++
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~FiDR---dp~~F~~ILnflR~g~l~~p~~~~~~~l~ 75 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFFDR---DPDIFRHILNFYRTGKLHYPRHECISAYD 75 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEECS---CTTTHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEEeC---CcHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 7899999999999888765422 12222100 01124566542 358999999999999987754 3589999
Q ss_pred HhHhhcCcchh
Q 006841 105 CAAEYLQMTED 115 (629)
Q Consensus 105 cAA~~LqMte~ 115 (629)
.-|+|.++.+.
T Consensus 76 ~Ea~fy~i~~l 86 (105)
T 1nn7_A 76 EELAFFGLIPE 86 (105)
T ss_dssp HHHHHHTCCSC
T ss_pred HHHHHcCCCHH
Confidence 99999999974
No 35
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=89.92 E-value=0.18 Score=46.79 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=58.8
Q ss_pred ceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCC----CCCCceeecCCCCCCHHHHHHHHHHhhcCccccch-hhHH
Q 006841 27 SSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-YNIV 101 (629)
Q Consensus 27 lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~----~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~-~NV~ 101 (629)
..=|+|.|||+.|...+..|...-+ .|+..... .....++-|. -.+..|+.|++|.-+|++.+.. ..+.
T Consensus 34 ~~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFiD---Rdp~~F~~ILnflR~G~l~~p~~~~~~ 107 (140)
T 2nz0_B 34 DELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLHYPRYECIS 107 (140)
T ss_dssp CCEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEEC---SCHHHHHHHHHHHHHSSBCCCTTSCHH
T ss_pred CCEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEEe---CCcHHHHHHHHHHhcCCcCCCCCcCHH
Confidence 3457889999999999888765422 12222100 0112456654 2479999999999999988754 3589
Q ss_pred HHHHhHhhcCcchh
Q 006841 102 AARCAAEYLQMTED 115 (629)
Q Consensus 102 ~L~cAA~~LqMte~ 115 (629)
.++.-|+|+++.+.
T Consensus 108 ~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 108 AYDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHHTCCGG
T ss_pred HHHHHHHHcCCChH
Confidence 99999999999975
No 36
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=62.90 E-value=1.9 Score=29.07 Aligned_cols=17 Identities=41% Similarity=0.427 Sum_probs=14.5
Q ss_pred hhHHHHHHhHhhcCcch
Q 006841 98 YNIVAARCAAEYLQMTE 114 (629)
Q Consensus 98 ~NV~~L~cAA~~LqMte 114 (629)
.||+.|+.||+||+=.|
T Consensus 3 ~nvq~LLeAAeyLErrE 19 (26)
T 1pd7_B 3 MNIQMLLEAADYLERRE 19 (26)
T ss_dssp CSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 59999999999998543
No 37
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=48.28 E-value=10 Score=33.66 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=25.9
Q ss_pred hhccCCCCChhhHHHHHHhcCCCCcccccchhHHHHHHHHhCCC
Q 006841 425 EIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPD 468 (629)
Q Consensus 425 EIA~D~nL~~sKF~~LAe~lPd~aR~~hDgLYRAIDiYLK~Hp~ 468 (629)
|...|.+.+|.++.+.+ .++++|||-||-+||.
T Consensus 90 e~~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 90 EKVHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp EESSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred EECCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 45677888888887765 6789999999999984
No 38
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=48.03 E-value=20 Score=39.42 Aligned_cols=83 Identities=8% Similarity=0.039 Sum_probs=56.5
Q ss_pred eEEEEEcCEEEEecccccccCCH-HHHHhhcCC--CCCCCCceeecCCCCCCHHHHHHHHHHhhc-Cccccch-hhHHHH
Q 006841 29 DLIIQVKGTRYLLHKFPLLSKCL-RLQRLCSES--PESSQHQIVQLPDFPGGIDAFELCAKFCYG-ITITLSA-YNIVAA 103 (629)
Q Consensus 29 DV~I~V~g~~F~lHK~vLas~S~-YFr~Lft~~--~~~~~~~~V~L~d~pGGaeaFell~~FcYg-~~i~it~-~NV~~L 103 (629)
=|+|.|||+.|...+.-|...-+ .+-+++... -.... .++-+. -.|+.|+.+++|..+ |++.+.. -.+..+
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~-~~~f~D---R~~~~F~~IL~~~r~~g~l~~p~~~~~~~~ 128 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLR-NEYFFD---RNRPSFDAILYYYQSGGRLRRPVNVPLDIF 128 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTT-TEEEEC---SCHHHHHHHHHHHHHTSCCCCCTTSCHHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCC-CCEEEc---CChHHHHHHHHHHhcCCccccCCcccHHHH
Confidence 46789999999998887754311 111222211 11112 456653 247999999999999 9987644 357788
Q ss_pred HHhHhhcCcchh
Q 006841 104 RCAAEYLQMTED 115 (629)
Q Consensus 104 ~cAA~~LqMte~ 115 (629)
..-|+|.++.+.
T Consensus 129 ~~E~~f~~i~~~ 140 (514)
T 2r9r_B 129 SEEIRFYELGEE 140 (514)
T ss_dssp HHHHHHTTCCHH
T ss_pred HHHHHhcCCCHH
Confidence 999999999985
No 39
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.72 E-value=48 Score=28.25 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=29.5
Q ss_pred cccchhhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhh
Q 006841 93 ITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 93 i~it~~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
=.|+++|...++..|+.++.++ |.++|..|+.++.
T Consensus 6 ~~L~~~NCl~i~~~A~~~~~~~------L~~~a~~fi~~nF 40 (105)
T 2eqx_A 6 SGVQVGNCLQVMWLADRHSDPE------LYTAAKHCAKTHL 40 (105)
T ss_dssp CCCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHH
Confidence 3588999999999999998885 7888999987655
Done!