Query 006842
Match_columns 629
No_of_seqs 724 out of 4118
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 15:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.4E-35 5.1E-40 344.8 11.5 404 157-624 159-582 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.1E-35 2E-39 339.8 10.5 407 161-625 139-559 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.2E-36 1.1E-40 299.0 -1.3 361 191-613 79-439 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.4E-35 5.2E-40 294.3 -1.1 407 137-612 55-462 (873)
5 cd00116 LRR_RI Leucine-rich re 100.0 2.1E-27 4.5E-32 242.6 33.3 312 166-482 2-318 (319)
6 cd00116 LRR_RI Leucine-rich re 100.0 4.5E-27 9.7E-32 240.1 34.0 268 246-514 23-293 (319)
7 KOG1909 Ran GTPase-activating 99.9 7E-26 1.5E-30 214.8 21.9 279 148-427 16-310 (382)
8 KOG1909 Ran GTPase-activating 99.9 1.9E-25 4.2E-30 211.8 21.7 349 210-612 22-379 (382)
9 KOG0444 Cytoskeletal regulator 99.9 2.1E-28 4.5E-33 246.4 -5.2 368 161-601 6-373 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 1.4E-27 3.1E-32 240.4 -5.1 346 157-571 27-373 (1255)
11 KOG0472 Leucine-rich repeat pr 99.9 1.5E-27 3.2E-32 229.0 -6.2 391 153-603 59-541 (565)
12 KOG0618 Serine/threonine phosp 99.9 6.5E-26 1.4E-30 238.9 1.9 390 157-614 40-500 (1081)
13 KOG0472 Leucine-rich repeat pr 99.9 2E-25 4.4E-30 214.4 -8.2 365 156-574 108-542 (565)
14 KOG0618 Serine/threonine phosp 99.9 4.8E-23 1E-27 217.5 0.5 384 163-617 22-433 (1081)
15 KOG4308 LRR-containing protein 99.8 7E-21 1.5E-25 198.7 11.9 416 154-604 44-474 (478)
16 PRK15387 E3 ubiquitin-protein 99.8 6.7E-20 1.4E-24 200.0 6.1 267 218-582 201-467 (788)
17 KOG4308 LRR-containing protein 99.8 6.5E-19 1.4E-23 184.0 11.2 368 146-514 99-475 (478)
18 KOG4237 Extracellular matrix p 99.8 3.9E-20 8.5E-25 178.1 -0.3 413 148-617 52-491 (498)
19 PRK15387 E3 ubiquitin-protein 99.7 3.2E-18 6.9E-23 186.9 9.9 270 179-549 192-461 (788)
20 COG5238 RNA1 Ran GTPase-activa 99.7 7.1E-17 1.5E-21 148.3 15.6 260 150-428 18-285 (388)
21 COG5238 RNA1 Ran GTPase-activa 99.7 3.3E-16 7.1E-21 144.0 19.6 247 217-483 29-284 (388)
22 PRK15370 E3 ubiquitin-protein 99.7 1.1E-17 2.4E-22 183.9 7.3 252 246-574 178-429 (754)
23 PLN03210 Resistant to P. syrin 99.7 2.7E-17 5.8E-22 193.3 8.2 340 158-570 554-903 (1153)
24 KOG4237 Extracellular matrix p 99.7 1.4E-18 3E-23 167.5 -2.7 283 274-604 67-360 (498)
25 PRK15370 E3 ubiquitin-protein 99.7 6.8E-17 1.5E-21 177.8 10.0 250 219-546 179-428 (754)
26 PLN03210 Resistant to P. syrin 99.6 2E-16 4.3E-21 186.0 7.5 124 443-600 778-903 (1153)
27 KOG4341 F-box protein containi 99.6 5.9E-15 1.3E-19 143.9 9.0 319 156-507 131-460 (483)
28 KOG4341 F-box protein containi 99.5 4.2E-14 9.1E-19 138.0 10.9 276 152-453 154-436 (483)
29 KOG2120 SCF ubiquitin ligase, 99.4 4.3E-13 9.3E-18 125.3 9.6 241 192-464 138-383 (419)
30 KOG2120 SCF ubiquitin ligase, 99.4 9.3E-13 2E-17 123.1 8.6 196 360-583 186-385 (419)
31 KOG3207 Beta-tubulin folding c 99.4 2.7E-14 5.8E-19 140.1 -2.5 182 144-344 103-285 (505)
32 KOG3207 Beta-tubulin folding c 99.4 5.8E-14 1.3E-18 137.8 -1.3 242 167-431 98-342 (505)
33 KOG0617 Ras suppressor protein 99.3 3.3E-14 7.2E-19 122.0 -5.4 155 360-548 34-188 (264)
34 KOG0617 Ras suppressor protein 99.2 5.3E-14 1.1E-18 120.8 -7.6 194 384-615 30-224 (264)
35 KOG1259 Nischarin, modulator o 99.1 2.6E-11 5.7E-16 113.5 0.7 133 385-548 282-414 (490)
36 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 105.4 4.0 15 499-513 88-102 (175)
37 PF14580 LRR_9: Leucine-rich r 99.0 6.8E-11 1.5E-15 106.6 1.7 83 360-456 43-126 (175)
38 KOG1259 Nischarin, modulator o 99.0 9.5E-11 2.1E-15 109.8 -0.5 58 361-429 286-343 (490)
39 COG4886 Leucine-rich repeat (L 98.9 8.9E-10 1.9E-14 115.8 4.0 175 360-576 117-293 (394)
40 COG4886 Leucine-rich repeat (L 98.8 3.1E-09 6.6E-14 111.8 4.1 176 246-458 116-292 (394)
41 KOG0531 Protein phosphatase 1, 98.8 3.4E-10 7.4E-15 119.2 -3.7 220 246-514 49-270 (414)
42 KOG0531 Protein phosphatase 1, 98.8 4.1E-10 8.8E-15 118.6 -3.8 239 218-512 49-290 (414)
43 KOG1859 Leucine-rich repeat pr 98.8 2.1E-09 4.5E-14 112.2 1.1 127 388-545 165-291 (1096)
44 KOG0532 Leucine-rich repeat (L 98.7 7.2E-10 1.6E-14 112.8 -3.5 176 391-610 79-254 (722)
45 KOG1859 Leucine-rich repeat pr 98.7 5.6E-09 1.2E-13 109.1 2.6 185 383-608 105-297 (1096)
46 KOG0532 Leucine-rich repeat (L 98.7 7.5E-10 1.6E-14 112.7 -4.8 173 220-430 77-249 (722)
47 KOG2982 Uncharacterized conser 98.5 1.3E-07 2.8E-12 89.2 6.5 109 164-284 47-156 (418)
48 KOG2982 Uncharacterized conser 98.5 1.3E-07 2.8E-12 89.1 5.9 111 191-312 46-156 (418)
49 KOG1947 Leucine rich repeat pr 98.5 4.3E-07 9.3E-12 98.3 9.8 234 189-455 187-439 (482)
50 KOG1947 Leucine rich repeat pr 98.4 1.5E-06 3.2E-11 94.2 12.0 256 190-483 161-439 (482)
51 KOG3665 ZYG-1-like serine/thre 98.4 2.8E-06 6E-11 93.6 13.7 117 329-458 147-265 (699)
52 PLN03150 hypothetical protein; 98.4 1.5E-07 3.2E-12 103.9 3.3 107 473-601 420-526 (623)
53 KOG3665 ZYG-1-like serine/thre 98.3 2.9E-06 6.3E-11 93.5 9.8 34 162-200 60-93 (699)
54 PLN03150 hypothetical protein; 98.2 1.6E-06 3.4E-11 95.8 6.5 84 361-456 420-503 (623)
55 PF13855 LRR_8: Leucine rich r 98.2 1.5E-07 3.3E-12 69.5 -1.0 60 499-571 1-60 (61)
56 PF13855 LRR_8: Leucine rich r 98.2 7.9E-08 1.7E-12 71.1 -2.6 61 471-545 1-61 (61)
57 KOG4579 Leucine-rich repeat (L 98.1 3.5E-06 7.6E-11 70.6 4.7 85 471-574 53-137 (177)
58 KOG4658 Apoptotic ATPase [Sign 97.9 4E-06 8.6E-11 94.9 2.7 149 220-394 525-675 (889)
59 KOG4579 Leucine-rich repeat (L 97.9 6.5E-06 1.4E-10 69.0 2.7 139 415-579 27-165 (177)
60 KOG4658 Apoptotic ATPase [Sign 97.8 3.1E-05 6.8E-10 87.8 6.7 128 275-426 524-653 (889)
61 KOG2123 Uncharacterized conser 97.6 1.7E-05 3.7E-10 74.5 -0.1 104 218-336 19-123 (388)
62 PF12799 LRR_4: Leucine Rich r 97.5 8.6E-05 1.9E-09 50.2 3.1 37 360-401 2-38 (44)
63 PF12799 LRR_4: Leucine Rich r 97.4 0.00012 2.7E-09 49.4 2.9 36 388-428 2-37 (44)
64 KOG1644 U2-associated snRNP A' 97.4 4.6E-05 9.9E-10 68.4 0.8 84 303-400 43-126 (233)
65 KOG1644 U2-associated snRNP A' 97.4 7.3E-05 1.6E-09 67.2 1.7 108 360-482 43-151 (233)
66 KOG2123 Uncharacterized conser 97.2 0.00011 2.3E-09 69.2 1.3 105 189-308 18-123 (388)
67 KOG4242 Predicted myosin-I-bin 97.0 0.0003 6.4E-09 71.1 1.8 317 160-494 163-491 (553)
68 KOG4242 Predicted myosin-I-bin 96.9 0.00052 1.1E-08 69.4 2.9 43 470-512 439-481 (553)
69 PRK15386 type III secretion pr 96.6 0.0011 2.4E-08 67.7 2.2 138 158-341 48-188 (426)
70 KOG3735 Tropomodulin and leiom 96.5 0.0076 1.6E-07 58.7 7.2 118 387-504 198-318 (353)
71 KOG2739 Leucine-rich acidic nu 96.4 0.0011 2.3E-08 62.5 1.0 32 360-397 44-75 (260)
72 KOG3864 Uncharacterized conser 96.4 0.0034 7.4E-08 56.8 3.9 83 163-256 102-186 (221)
73 KOG3864 Uncharacterized conser 96.3 0.0056 1.2E-07 55.4 4.8 82 360-452 102-185 (221)
74 PRK15386 type III secretion pr 96.2 0.0043 9.2E-08 63.5 3.9 78 409-512 46-125 (426)
75 KOG2739 Leucine-rich acidic nu 96.2 0.0023 5E-08 60.3 1.5 86 415-513 43-130 (260)
76 smart00368 LRR_RI Leucine rich 95.6 0.02 4.2E-07 34.3 3.5 23 219-241 3-25 (28)
77 smart00368 LRR_RI Leucine rich 95.4 0.029 6.3E-07 33.6 3.6 24 443-466 2-25 (28)
78 PF13516 LRR_6: Leucine Rich r 95.1 0.012 2.5E-07 33.9 1.3 21 591-611 3-23 (24)
79 KOG3735 Tropomodulin and leiom 95.1 0.053 1.2E-06 53.0 6.5 94 160-253 196-290 (353)
80 PF13516 LRR_6: Leucine Rich r 94.9 0.018 3.9E-07 33.0 1.7 19 444-462 3-21 (24)
81 PF13306 LRR_5: Leucine rich r 93.0 0.04 8.6E-07 47.4 1.0 14 326-339 31-44 (129)
82 PF00560 LRR_1: Leucine Rich R 92.2 0.023 4.9E-07 31.9 -1.1 14 592-605 2-15 (22)
83 PF00560 LRR_1: Leucine Rich R 91.4 0.11 2.4E-06 29.0 1.2 13 500-512 1-13 (22)
84 smart00367 LRR_CC Leucine-rich 91.3 0.22 4.8E-06 29.1 2.5 19 191-209 3-22 (26)
85 smart00367 LRR_CC Leucine-rich 90.9 0.27 5.8E-06 28.8 2.5 24 161-184 1-25 (26)
86 PF13504 LRR_7: Leucine rich r 89.1 0.18 3.9E-06 26.1 0.7 12 592-603 3-14 (17)
87 PF13306 LRR_5: Leucine rich r 87.9 0.042 9.1E-07 47.2 -3.6 45 560-613 81-125 (129)
88 KOG0473 Leucine-rich repeat pr 85.4 0.086 1.9E-06 48.9 -3.0 83 499-603 42-124 (326)
89 smart00369 LRR_TYP Leucine-ric 84.8 0.49 1.1E-05 27.6 1.0 20 591-610 3-22 (26)
90 smart00370 LRR Leucine-rich re 84.8 0.49 1.1E-05 27.6 1.0 20 591-610 3-22 (26)
91 KOG3763 mRNA export factor TAP 83.1 0.59 1.3E-05 49.1 1.5 17 498-514 217-233 (585)
92 KOG3763 mRNA export factor TAP 82.6 2.6 5.7E-05 44.5 5.9 68 356-429 215-284 (585)
93 smart00365 LRR_SD22 Leucine-ri 70.2 3.1 6.7E-05 24.3 1.4 15 560-574 2-16 (26)
94 KOG0473 Leucine-rich repeat pr 61.0 0.25 5.5E-06 46.0 -6.6 84 246-344 42-125 (326)
95 smart00364 LRR_BAC Leucine-ric 48.0 11 0.00024 22.0 1.1 14 561-574 3-16 (26)
96 PF03382 DUF285: Mycoplasma pr 20.1 89 0.0019 26.2 2.5 16 492-508 54-69 (120)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-35 Score=344.76 Aligned_cols=404 Identities=19% Similarity=0.203 Sum_probs=223.6
Q ss_pred HHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHH
Q 006842 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (629)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 236 (629)
.+..+++|++|+|++|.+... ++..+..+++|++|+|++|.++.. ++..+..+++|++|+|++|.+...
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~--- 227 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGK----IPNSLTNLTSLEFLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGE--- 227 (968)
T ss_pred HHhcCCCCCEEECccCccccc----CChhhhhCcCCCeeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCc---
Confidence 345566666777766665433 334445556666666666665432 222334556666666666666543
Q ss_pred HHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCCh
Q 006842 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (629)
Q Consensus 237 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (629)
++..+..+++|++|++++|.++.. ++..+.++++|++|++++|.+.+ .++..+..+++|++|++++|.+..
T Consensus 228 -~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 228 -IPYEIGGLTSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred -CChhHhcCCCCCEEECcCceeccc----cChhHhCCCCCCEEECcCCeeec----cCchhHhhccCcCEEECcCCeecc
Confidence 233344556666777766666543 34445555666666666666642 234445556666666666666543
Q ss_pred hhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccC
Q 006842 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396 (629)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 396 (629)
.. +..+.++++|++|++++|.++......+ ..+++|+.|++++|.++.. ++..+..+++|+.|++++
T Consensus 299 ~~----p~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 299 EI----PELVIQLQNLEILHLFSNNFTGKIPVAL-----TSLPRLQVLQLWSNKFSGE----IPKNLGKHNNLTVLDLST 365 (968)
T ss_pred CC----ChhHcCCCCCcEEECCCCccCCcCChhH-----hcCCCCCEEECcCCCCcCc----CChHHhCCCCCcEEECCC
Confidence 22 2344556666666666666654322222 2344566666666666543 455555666666666666
Q ss_pred CCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEE
Q 006842 397 NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTL 476 (629)
Q Consensus 397 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L 476 (629)
|.+... ++..+..+++|+.|++++|.+... ++..+..+++|+.|++++|.++...+.. +..++.|+.|
T Consensus 366 n~l~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L 433 (968)
T PLN00113 366 NNLTGE----IPEGLCSSGNLFKLILFSNSLEGE----IPKSLGACRSLRRVRLQDNSFSGELPSE----FTKLPLVYFL 433 (968)
T ss_pred CeeEee----CChhHhCcCCCCEEECcCCEeccc----CCHHHhCCCCCCEEECcCCEeeeECChh----HhcCCCCCEE
Confidence 655543 333344444455555555544433 2333344455555555555554332222 2223445555
Q ss_pred eccCCCCCHHHHHHHHHH-------------------HhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhh
Q 006842 477 KLGWCQIGASGAEFVADM-------------------LRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLF 537 (629)
Q Consensus 477 ~L~~n~i~~~~~~~l~~~-------------------l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~ 537 (629)
++++|.++...+..+..+ ....++|+.|++++|++.+. .|..+.++++|+.
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~----------~~~~~~~l~~L~~ 503 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA----------VPRKLGSLSELMQ 503 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCc----------cChhhhhhhccCE
Confidence 555554443322222111 00113445555555555444 5667777888888
Q ss_pred hhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHHHHHHHH-
Q 006842 538 YSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDL- 616 (629)
Q Consensus 538 L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~l- 616 (629)
|++++|++++. ++..+... ++|++|+|++|.+++..|..+..+ ++|+.|+|++|++++..|..+..+..+
T Consensus 504 L~Ls~N~l~~~--~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 504 LKLSENKLSGE--IPDELSSC-KKLVSLDLSHNQLSGQIPASFSEM------PVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred EECcCCcceee--CChHHcCc-cCCCEEECCCCcccccCChhHhCc------ccCCEEECCCCcccccCChhHhcCcccC
Confidence 88888887765 33334333 678888888888887777777655 468888888888887777777665443
Q ss_pred hhhccceE
Q 006842 617 VYEMSEKE 624 (629)
Q Consensus 617 ~~~l~~~~ 624 (629)
..++++|.
T Consensus 575 ~l~ls~N~ 582 (968)
T PLN00113 575 QVNISHNH 582 (968)
T ss_pred EEeccCCc
Confidence 23444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.1e-35 Score=339.83 Aligned_cols=407 Identities=17% Similarity=0.208 Sum_probs=209.9
Q ss_pred cCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHH
Q 006842 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (629)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 240 (629)
+++|++|+|++|.++.. ++..+..+++|++|+|++|.++.. ++..+.++++|++|+|++|.+... ++.
T Consensus 139 l~~L~~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~ 206 (968)
T PLN00113 139 IPNLETLDLSNNMLSGE----IPNDIGSFSSLKVLDLGGNVLVGK----IPNSLTNLTSLEFLTLASNQLVGQ----IPR 206 (968)
T ss_pred cCCCCEEECcCCccccc----CChHHhcCCCCCEEECccCccccc----CChhhhhCcCCCeeeccCCCCcCc----CCh
Confidence 34444444444444322 233334445555555555544322 111222344455555555544322 223
Q ss_pred HHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHH
Q 006842 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (629)
Q Consensus 241 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (629)
.+..+++|++|+|++|.++.. ++..+.++++|++|++++|.++ ..++..+.++++|++|++++|.+....
T Consensus 207 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~-- 276 (968)
T PLN00113 207 ELGQMKSLKWIYLGYNNLSGE----IPYEIGGLTSLNHLDLVYNNLT----GPIPSSLGNLKNLQYLFLYQNKLSGPI-- 276 (968)
T ss_pred HHcCcCCccEEECcCCccCCc----CChhHhcCCCCCEEECcCceec----cccChhHhCCCCCCEEECcCCeeeccC--
Confidence 333345555555555554432 2333344455555555555443 223344444555555555555443221
Q ss_pred HHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCC
Q 006842 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (629)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (629)
+..+..+++|++|++++|.+.......+ ..+++|+.|++++|.++.. ++..+..+++|++|++++|.+.
T Consensus 277 --p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 277 --PPSIFSLQKLISLDLSDNSLSGEIPELV-----IQLQNLEILHLFSNNFTGK----IPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred --chhHhhccCcCEEECcCCeeccCCChhH-----cCCCCCcEEECCCCccCCc----CChhHhcCCCCCEEECcCCCCc
Confidence 1223344555555555555443211111 2334555555555555543 4444555555555555555554
Q ss_pred hHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccC
Q 006842 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (629)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 480 (629)
.. ++..+..+++|+.|++++|+++.. ++..+..+++|+.|++++|.+....+ ..+..+++|+.|++++
T Consensus 346 ~~----~p~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~~~L~~L~l~~n~l~~~~p----~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 346 GE----IPKNLGKHNNLTVLDLSTNNLTGE----IPEGLCSSGNLFKLILFSNSLEGEIP----KSLGACRSLRRVRLQD 413 (968)
T ss_pred Cc----CChHHhCCCCCcEEECCCCeeEee----CChhHhCcCCCCEEECcCCEecccCC----HHHhCCCCCCEEECcC
Confidence 43 444455555556666665555443 22333334556666666665544322 2334567888888888
Q ss_pred CCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCC-------------chhhhHHHHhhhhhhhhhhhhhcchh
Q 006842 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNG-------------LSFFHSAIYSLKHMLFYSLCINYLQG 547 (629)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~-------------l~~~~~~~~~l~~L~~L~Ls~N~l~~ 547 (629)
|.++...+..+.. +++|+.|++++|.+.+.++..+.. +....+.....++|+.|++++|++++
T Consensus 414 n~l~~~~p~~~~~----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~ 489 (968)
T PLN00113 414 NSFSGELPSEFTK----LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG 489 (968)
T ss_pred CEeeeECChhHhc----CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCC
Confidence 8877654444443 378888888888887764432111 11111112234566667777777665
Q ss_pred hHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHHHHHHHHh-hhccceEE
Q 006842 548 AKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLV-YEMSEKEV 625 (629)
Q Consensus 548 ~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~l~-~~l~~~~i 625 (629)
. .+..+... ++|++|+|++|++.+..|..+..+ .+|++|+|++|.+++..+..|..+.++. .++++|.+
T Consensus 490 ~--~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 490 A--VPRKLGSL-SELMQLKLSENKLSGEIPDELSSC------KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred c--cChhhhhh-hccCEEECcCCcceeeCChHHcCc------cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 4 23333322 677788888887777777766554 4688888888888888887777766553 34555444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-36 Score=298.99 Aligned_cols=361 Identities=20% Similarity=0.202 Sum_probs=221.3
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHH
Q 006842 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270 (629)
Q Consensus 191 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 270 (629)
..+.|++++|+++++.+..| .++++|+++++.+|.++.+ +.+.....+|+.|+|.+|.|+....+.+...
T Consensus 79 ~t~~LdlsnNkl~~id~~~f----~nl~nLq~v~l~~N~Lt~I-----P~f~~~sghl~~L~L~~N~I~sv~se~L~~l- 148 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFF----YNLPNLQEVNLNKNELTRI-----PRFGHESGHLEKLDLRHNLISSVTSEELSAL- 148 (873)
T ss_pred ceeeeeccccccccCcHHHH----hcCCcceeeeeccchhhhc-----ccccccccceeEEeeeccccccccHHHHHhH-
Confidence 34556666666666555444 2456677777766666532 3333334557777777777666555444443
Q ss_pred hcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHH
Q 006842 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350 (629)
Q Consensus 271 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 350 (629)
+.|+.|||+.|.|+..... .+..-.++++|+|++|.|+.++.. .|..+.+|..|.|+.|+++......+
T Consensus 149 ---~alrslDLSrN~is~i~~~----sfp~~~ni~~L~La~N~It~l~~~----~F~~lnsL~tlkLsrNrittLp~r~F 217 (873)
T KOG4194|consen 149 ---PALRSLDLSRNLISEIPKP----SFPAKVNIKKLNLASNRITTLETG----HFDSLNSLLTLKLSRNRITTLPQRSF 217 (873)
T ss_pred ---hhhhhhhhhhchhhcccCC----CCCCCCCceEEeeccccccccccc----cccccchheeeecccCcccccCHHHh
Confidence 5577777777766532211 222335677777777777766653 34455667777777777766433333
Q ss_pred HHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHH
Q 006842 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430 (629)
Q Consensus 351 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 430 (629)
..+++|+.|+|..|+|... -.-.|.++++|+.|.|..|+|... -..+|..+.++++|+|..|+++..
T Consensus 218 -----k~L~~L~~LdLnrN~iriv----e~ltFqgL~Sl~nlklqrN~I~kL----~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 218 -----KRLPKLESLDLNRNRIRIV----EGLTFQGLPSLQNLKLQRNDISKL----DDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred -----hhcchhhhhhccccceeee----hhhhhcCchhhhhhhhhhcCcccc----cCcceeeecccceeecccchhhhh
Confidence 5566677777777766653 123456677777777777755432 112455566777777777777665
Q ss_pred HHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCC
Q 006842 431 GASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 510 (629)
Q Consensus 431 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 510 (629)
.-+. +.++..|+.|++|+|.|....+..+ +++++|+.|+|++|+|+......|..+ ..|++|+|++|.
T Consensus 285 n~g~----lfgLt~L~~L~lS~NaI~rih~d~W----sftqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 285 NEGW----LFGLTSLEQLDLSYNAIQRIHIDSW----SFTQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHNS 352 (873)
T ss_pred hccc----ccccchhhhhccchhhhheeecchh----hhcccceeEeccccccccCChhHHHHH----HHhhhhcccccc
Confidence 3332 3334777777777777665544433 345677777777777777666666665 677777777777
Q ss_pred CCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCcc
Q 006842 511 LRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDV 590 (629)
Q Consensus 511 l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~ 590 (629)
|+.. -...|..+++|+.|||.+|.++....-....+...++|+.|+|.+|+|..+.-.++..+ .
T Consensus 353 i~~l----------~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl------~ 416 (873)
T KOG4194|consen 353 IDHL----------AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL------E 416 (873)
T ss_pred hHHH----------HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccC------c
Confidence 7655 55667777777777777777765433333333334777777777777777555555444 3
Q ss_pred ceeeeeccCCccchhHHHHHHHH
Q 006842 591 AVTSLNLANNFLTKFGQSALTDA 613 (629)
Q Consensus 591 ~L~~L~L~~N~i~~~~~~~l~~~ 613 (629)
.|++|||.+|.|-.+.+.+|..+
T Consensus 417 ~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 417 ALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ccceecCCCCcceeecccccccc
Confidence 67777777777777777777666
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-35 Score=294.26 Aligned_cols=407 Identities=19% Similarity=0.158 Sum_probs=316.0
Q ss_pred ccccccccccchhhHHHHHHHHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhc
Q 006842 137 NLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQS 216 (629)
Q Consensus 137 n~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 216 (629)
.+++|-+..+...+...+..++ .+.-+.||+++|.+.+.+.. .|.+.++|+++++.+|.++.+ +.....
T Consensus 55 ~lldcs~~~lea~~~~~l~g~l--p~~t~~LdlsnNkl~~id~~----~f~nl~nLq~v~l~~N~Lt~I-----P~f~~~ 123 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFL--PSQTQTLDLSNNKLSHIDFE----FFYNLPNLQEVNLNKNELTRI-----PRFGHE 123 (873)
T ss_pred eeeecCccccccccccccCCcC--ccceeeeeccccccccCcHH----HHhcCCcceeeeeccchhhhc-----cccccc
Confidence 4455555555555554444442 35567899999999887744 445669999999999988643 333334
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHH
Q 006842 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE 296 (629)
Q Consensus 217 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 296 (629)
..+|+.|+|.+|.|+....+.+... +.|+.|||+.|.|+......++.. .++++|+|++|.|++.+..
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l----~alrslDLSrN~is~i~~~sfp~~----~ni~~L~La~N~It~l~~~---- 191 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSAL----PALRSLDLSRNLISEIPKPSFPAK----VNIKKLNLASNRITTLETG---- 191 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhH----hhhhhhhhhhchhhcccCCCCCCC----CCceEEeeccccccccccc----
Confidence 5569999999999988765555444 899999999999988655445443 7899999999999866543
Q ss_pred HHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhH
Q 006842 297 ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA 376 (629)
Q Consensus 297 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 376 (629)
.|..+.+|..|.|+.|+|+.++. ..|.++++|+.|+|..|.|.-.....+ ..+++|+.|.|..|.|...
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~----r~Fk~L~~L~~LdLnrN~irive~ltF-----qgL~Sl~nlklqrN~I~kL-- 260 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQ----RSFKRLPKLESLDLNRNRIRIVEGLTF-----QGLPSLQNLKLQRNDISKL-- 260 (873)
T ss_pred cccccchheeeecccCcccccCH----HHhhhcchhhhhhccccceeeehhhhh-----cCchhhhhhhhhhcCcccc--
Confidence 44467799999999999999987 556789999999999999876433334 5677899999999998874
Q ss_pred HHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCC
Q 006842 377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 377 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
-..+|..+.++++|+|+.|++... -..++.+++.|+.|++++|.|....+ +.+.-+++|++|+|++|+|+
T Consensus 261 --~DG~Fy~l~kme~l~L~~N~l~~v----n~g~lfgLt~L~~L~lS~NaI~rih~----d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 261 --DDGAFYGLEKMEHLNLETNRLQAV----NEGWLFGLTSLEQLDLSYNAIQRIHI----DSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred --cCcceeeecccceeecccchhhhh----hcccccccchhhhhccchhhhheeec----chhhhcccceeEeccccccc
Confidence 234567899999999999998875 34567778999999999999987643 34455799999999999999
Q ss_pred hhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhh
Q 006842 457 ADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHML 536 (629)
Q Consensus 457 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~ 536 (629)
......+..+ ..|++|+|++|.|+......|..+ ++|++|||++|.|...+.+ -...|.+++.|+
T Consensus 331 ~l~~~sf~~L----~~Le~LnLs~Nsi~~l~e~af~~l----ssL~~LdLr~N~ls~~IED-------aa~~f~gl~~Lr 395 (873)
T KOG4194|consen 331 RLDEGSFRVL----SQLEELNLSHNSIDHLAEGAFVGL----SSLHKLDLRSNELSWCIED-------AAVAFNGLPSLR 395 (873)
T ss_pred cCChhHHHHH----HHhhhhcccccchHHHHhhHHHHh----hhhhhhcCcCCeEEEEEec-------chhhhccchhhh
Confidence 8877777665 789999999999988887777777 9999999999999877333 456788899999
Q ss_pred hhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCC-ccchhHHHHHHH
Q 006842 537 FYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN-FLTKFGQSALTD 612 (629)
Q Consensus 537 ~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N-~i~~~~~~~l~~ 612 (629)
.|++.+|++..+. ..+|.++ +.|++|||.+|.|..+.+.+|..+ .|++|-+..- -+.+-...-|.+
T Consensus 396 kL~l~gNqlk~I~--krAfsgl-~~LE~LdL~~NaiaSIq~nAFe~m-------~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 396 KLRLTGNQLKSIP--KRAFSGL-EALEHLDLGDNAIASIQPNAFEPM-------ELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred heeecCceeeecc--hhhhccC-cccceecCCCCcceeecccccccc-------hhhhhhhcccceEEeccHHHHHH
Confidence 9999999998752 3344444 899999999999999999988776 5888877543 344444444433
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.96 E-value=2.1e-27 Score=242.61 Aligned_cols=312 Identities=33% Similarity=0.440 Sum_probs=198.0
Q ss_pred EEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCC--hhHHHHHHHHHh
Q 006842 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILV 243 (629)
Q Consensus 166 ~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~--~~~~~~l~~~l~ 243 (629)
.|+|.++.+++..+..+... ...|++|++++|.+++.+...+...+...+++++|+++++.+. ...+..++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~---l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPK---LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHH---HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 46777777765554433333 3558888888888877777777777777777888888887776 455566666666
Q ss_pred hCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhc-CCccEEeccCCCCChhhHHHH
Q 006842 244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANAL 322 (629)
Q Consensus 244 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l 322 (629)
.+++|++|++++|.+.......+...... ++|++|++++|.+++.+...+...+..+ ++|++|++++|.++..+...+
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 67778888888777776555555554444 5677777777777766666666666666 777777777777765555555
Q ss_pred HHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChH
Q 006842 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (629)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 402 (629)
...+..+++|++|++++|.+++.++..+...+.. .++|++|++++|.+++.+...+...+..+++|++|++++|.+++.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 6666666677777777777766555555544442 245666666666666665555555566666666666666666665
Q ss_pred HHHHHHHHHhc-CCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcC-CCccEEeccC
Q 006842 403 GAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLKLGW 480 (629)
Q Consensus 403 ~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~ 480 (629)
++..+...+.. .+.|++|++++|.+++.+...+...+..+++|+++++++|.+++.+...+...+... +.|+.|++.+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 55555444322 345666666666666555555555555555666666666666655555555554444 4555555555
Q ss_pred CC
Q 006842 481 CQ 482 (629)
Q Consensus 481 n~ 482 (629)
|.
T Consensus 317 ~~ 318 (319)
T cd00116 317 DS 318 (319)
T ss_pred CC
Confidence 43
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.96 E-value=4.5e-27 Score=240.12 Aligned_cols=268 Identities=32% Similarity=0.429 Sum_probs=168.1
Q ss_pred CCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCC--hhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHH
Q 006842 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID--YSGFTSLAEALLENSTIRSLHLNGNYGGALGANALA 323 (629)
Q Consensus 246 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~--~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 323 (629)
.+|++|+++++.+++.+...++..+...+.|++|+++++.+. ..++..++..+..+++|++|++++|.+.......+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 445555555555555555555555555555556665555554 344455555555566666666666665544443333
Q ss_pred HHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHH
Q 006842 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403 (629)
Q Consensus 324 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 403 (629)
..... ++|++|++++|.+++.+...+...+....++|+.|++++|.++..+...+...+..+++|++|++++|.+++.+
T Consensus 103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 33333 55666677666666655555555554332567777777777766555556666666677777777777777666
Q ss_pred HHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHh-cCCCccEEeccCCC
Q 006842 404 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK-FHGNINTLKLGWCQ 482 (629)
Q Consensus 404 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L~~L~L~~n~ 482 (629)
+..++..+..+++|++|++++|.+++.+...+...+..+++|++|++++|.+++.+...+...+. ..+.|++|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 66666666666677777777777777666666666666777777777777777666666555432 24567777777777
Q ss_pred CCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 483 IGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 483 i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
+++.+...+...+..+++|+++++++|.+++.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 77666666666666667777777777777766
No 7
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.94 E-value=7e-26 Score=214.76 Aligned_cols=279 Identities=27% Similarity=0.374 Sum_probs=178.5
Q ss_pred hhhHHHHHHHHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCC---H---HHHHHHHHHhhcCCCcC
Q 006842 148 RESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGIT---A---AGIKAFDGVLQSNIALK 221 (629)
Q Consensus 148 ~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~---~---~~~~~l~~~l~~~~~L~ 221 (629)
....+.+.+.+.....++.|+|++|.|+.+.++.+++.+...+.|++.++++-... + ..+..|..++..++.|+
T Consensus 16 ~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 16 EEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 34456677777788999999999999999999999999999999999999875422 1 33556777788888999
Q ss_pred EEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHh---------cCCCccEEEeccCCCChhhHH
Q 006842 222 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK---------NNSILRVLELNNNMIDYSGFT 292 (629)
Q Consensus 222 ~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~---------~~~~L~~L~L~~n~i~~~~~~ 292 (629)
+||||+|-++..++..+...+.++..|++|.|.+|.++..+...+...+. .-+.|+++...+|++.+.+..
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH
Confidence 99999999999999999999999999999999999999988888776532 223455555555555555555
Q ss_pred HHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCC
Q 006842 293 SLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372 (629)
Q Consensus 293 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 372 (629)
.++..+...+.|+.+.+..|.|...+...+..++..|++|+.|||.+|.++..+-..+...++ ..++|+.|++++|.+.
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~-s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS-SWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc-ccchheeecccccccc
Confidence 555555555555555555555554444444445555555555555555554444444444443 2224444444444444
Q ss_pred chhHHHHHHHHHc-CCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCC
Q 006842 373 AKGAFHVAEYIKN-CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (629)
Q Consensus 373 ~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 427 (629)
+.|...+...+.. .+.|+.|.+.+|.|+..+...+...+...+.|+.|+|++|.+
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4444444444432 244444444444444444444444444444444444444444
No 8
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.94 E-value=1.9e-25 Score=211.77 Aligned_cols=349 Identities=25% Similarity=0.327 Sum_probs=257.3
Q ss_pred HHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCC---h---HHHHHHHHHHhcCCCccEEEecc
Q 006842 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR---D---EGAKAIAELLKNNSILRVLELNN 283 (629)
Q Consensus 210 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~---~---~~~~~l~~~l~~~~~L~~L~L~~ 283 (629)
....+....++++|+||+|.++......++..+.+.++|+..++++-..+ + .....+...+..++.|++||||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 33333344455555555555555555555555555555555555442111 1 12334555666777888888888
Q ss_pred CCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceE
Q 006842 284 NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV 363 (629)
Q Consensus 284 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 363 (629)
|-++..++..+.+.+..+..|++|.|.+|.++..+...+..++..+. .+.. + ...++|++
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~kk-------~-----~~~~~Lrv 161 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNKK-------A-----ASKPKLRV 161 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHhc-------c-----CCCcceEE
Confidence 88888888888888878888888888888888777766665543321 1110 1 24457999
Q ss_pred EEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCC
Q 006842 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443 (629)
Q Consensus 364 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 443 (629)
+..++|++.+.|...++..+...+.|+.+.++.|.|...|+..+..++..|++|+.|||.+|.++..+..+++..+..++
T Consensus 162 ~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 162 FICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred EEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEECcCCCCChhHHHHHHHHHhc-CCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCC--ccccccCC
Q 006842 444 VITSLDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR--DEVCSGCN 520 (629)
Q Consensus 444 ~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~--~~~~~~~~ 520 (629)
+|+.|++++|.+.+.|...+...+.. .+.|+.|.|.+|.|+..+...+..++...+.|..|+|++|.+. +.
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de------ 315 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDE------ 315 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccch------
Confidence 99999999999999999999888754 6899999999999999999888888878899999999999994 33
Q ss_pred CchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCC
Q 006842 521 GLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 600 (629)
Q Consensus 521 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N 600 (629)
++..+...+...-..+...|.+.+.+.+.+......-..... .-+.++..+|
T Consensus 316 --------------------------~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~--t~~e~~ed~e 367 (382)
T KOG1909|consen 316 --------------------------GIDEIASKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKE--TFKELNEDGE 367 (382)
T ss_pred --------------------------hHHHHHHhcccccccchhhchhHHHHHhhhhhHHHHHHHhcC--cchhhccccc
Confidence 333333333111134566677777777776666665544333 4566777788
Q ss_pred ccchhHHHHHHH
Q 006842 601 FLTKFGQSALTD 612 (629)
Q Consensus 601 ~i~~~~~~~l~~ 612 (629)
.+.+.+++.+..
T Consensus 368 ~ie~e~~ee~~e 379 (382)
T KOG1909|consen 368 VIEEEGIEELKE 379 (382)
T ss_pred ccchhHHHHhhh
Confidence 888777766543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=2.1e-28 Score=246.39 Aligned_cols=368 Identities=18% Similarity=0.164 Sum_probs=238.6
Q ss_pred cCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHH
Q 006842 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (629)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 240 (629)
++-++-+|+++|.++... ++.....++.++.|.|...++. .++.-+..+.+|++|.+++|++... ..
T Consensus 6 LpFVrGvDfsgNDFsg~~---FP~~v~qMt~~~WLkLnrt~L~-----~vPeEL~~lqkLEHLs~~HN~L~~v-----hG 72 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDR---FPHDVEQMTQMTWLKLNRTKLE-----QVPEELSRLQKLEHLSMAHNQLISV-----HG 72 (1255)
T ss_pred cceeecccccCCcCCCCc---CchhHHHhhheeEEEechhhhh-----hChHHHHHHhhhhhhhhhhhhhHhh-----hh
Confidence 455677788888775332 4555566677777777665543 3444455666688888888776532 34
Q ss_pred HHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHH
Q 006842 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (629)
Q Consensus 241 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (629)
.+..++.|+.+.+.+|++...| ++.-+-++..|+.|||++|++ ...+..+...+++-.|+|++|+|..++..
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsG---iP~diF~l~dLt~lDLShNqL-----~EvP~~LE~AKn~iVLNLS~N~IetIPn~ 144 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSG---IPTDIFRLKDLTILDLSHNQL-----REVPTNLEYAKNSIVLNLSYNNIETIPNS 144 (1255)
T ss_pred hhccchhhHHHhhhccccccCC---CCchhcccccceeeecchhhh-----hhcchhhhhhcCcEEEEcccCccccCCch
Confidence 4455677777777777776543 344445557778888888877 45566666677777888888877776653
Q ss_pred HHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCC
Q 006842 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (629)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (629)
.+.++..|-.||||+|++.... ..+ ..+..|++|+|++|.+...... .+..+++|+.|.+++.+-+
T Consensus 145 ----lfinLtDLLfLDLS~NrLe~LP-----PQ~-RRL~~LqtL~Ls~NPL~hfQLr----QLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 145 ----LFINLTDLLFLDLSNNRLEMLP-----PQI-RRLSMLQTLKLSNNPLNHFQLR----QLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred ----HHHhhHhHhhhccccchhhhcC-----HHH-HHHhhhhhhhcCCChhhHHHHh----cCccchhhhhhhcccccch
Confidence 3335667777888888765421 111 1333677888888776654222 2234556667777765433
Q ss_pred hHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccC
Q 006842 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (629)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 480 (629)
- ..++..+..+.+|..+|++.|.+.. ++..+-+.++|+.|+||+|+|+..... .....+|++|+|+.
T Consensus 211 l---~N~Ptsld~l~NL~dvDlS~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL~~~-----~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 211 L---DNIPTSLDDLHNLRDVDLSENNLPI-----VPECLYKLRNLRRLNLSGNKITELNMT-----EGEWENLETLNLSR 277 (1255)
T ss_pred h---hcCCCchhhhhhhhhccccccCCCc-----chHHHhhhhhhheeccCcCceeeeecc-----HHHHhhhhhhcccc
Confidence 2 2356666667788888888887776 566666668888888888887654321 12235788888888
Q ss_pred CCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhc
Q 006842 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNE 560 (629)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~ 560 (629)
|+++.. +.++.+.+.|+.|.+.+|+++-. .+|..++.+.+|+.+..++|.+.- +|+++... .
T Consensus 278 NQLt~L-----P~avcKL~kL~kLy~n~NkL~Fe---------GiPSGIGKL~~Levf~aanN~LEl---VPEglcRC-~ 339 (1255)
T KOG0444|consen 278 NQLTVL-----PDAVCKLTKLTKLYANNNKLTFE---------GIPSGIGKLIQLEVFHAANNKLEL---VPEGLCRC-V 339 (1255)
T ss_pred chhccc-----hHHHhhhHHHHHHHhccCccccc---------CCccchhhhhhhHHHHhhcccccc---Cchhhhhh-H
Confidence 887553 23333447888888888877644 457777777888888888877654 35555433 6
Q ss_pred ccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCc
Q 006842 561 ALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNF 601 (629)
Q Consensus 561 ~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~ 601 (629)
.|+.|.|+.|++-. .|+++--+ +.|..||+..|+
T Consensus 340 kL~kL~L~~NrLiT-LPeaIHlL------~~l~vLDlreNp 373 (1255)
T KOG0444|consen 340 KLQKLKLDHNRLIT-LPEAIHLL------PDLKVLDLRENP 373 (1255)
T ss_pred HHHHhcccccceee-chhhhhhc------CCcceeeccCCc
Confidence 77888888887766 56666444 357778887775
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=1.4e-27 Score=240.40 Aligned_cols=346 Identities=18% Similarity=0.229 Sum_probs=259.1
Q ss_pred HHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHH
Q 006842 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (629)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 236 (629)
-++.++.++-|.|...++. .+++.+..+.+|+.|.+++|++.. +.+-++.++.|+.+++..|++...|
T Consensus 27 ~v~qMt~~~WLkLnrt~L~-----~vPeEL~~lqkLEHLs~~HN~L~~-----vhGELs~Lp~LRsv~~R~N~LKnsG-- 94 (1255)
T KOG0444|consen 27 DVEQMTQMTWLKLNRTKLE-----QVPEELSRLQKLEHLSMAHNQLIS-----VHGELSDLPRLRSVIVRDNNLKNSG-- 94 (1255)
T ss_pred hHHHhhheeEEEechhhhh-----hChHHHHHHhhhhhhhhhhhhhHh-----hhhhhccchhhHHHhhhccccccCC--
Confidence 3446777888888765543 367778888899999999998643 3344566778999999999887765
Q ss_pred HHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHH-HhhcCCccEEeccCCCCC
Q 006842 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA-LLENSTIRSLHLNGNYGG 315 (629)
Q Consensus 237 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~ 315 (629)
++.-+..+..|..|||++|++.+ .+..+.+-+++-.|+|++|+|. .++.. +.++..|-.|||++|++.
T Consensus 95 -iP~diF~l~dLt~lDLShNqL~E-----vP~~LE~AKn~iVLNLS~N~Ie-----tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 95 -IPTDIFRLKDLTILDLSHNQLRE-----VPTNLEYAKNSIVLNLSYNNIE-----TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred -CCchhcccccceeeecchhhhhh-----cchhhhhhcCcEEEEcccCccc-----cCCchHHHhhHhHhhhccccchhh
Confidence 45555667888999999998876 4555556688889999999884 33433 335778888899999876
Q ss_pred hhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEcc
Q 006842 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (629)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 395 (629)
..+ ..+..+..|++|+|++|.+....+..++ .+..|++|.+++.+-+-. .+|..+..+.+|..+|+|
T Consensus 164 ~LP-----PQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-----smtsL~vLhms~TqRTl~---N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 164 MLP-----PQIRRLSMLQTLKLSNNPLNHFQLRQLP-----SMTSLSVLHMSNTQRTLD---NIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hcC-----HHHHHHhhhhhhhcCCChhhHHHHhcCc-----cchhhhhhhcccccchhh---cCCCchhhhhhhhhcccc
Confidence 555 3456778899999999988765555552 445688888887653322 266677788899999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccE
Q 006842 396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475 (629)
Q Consensus 396 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 475 (629)
.|.+.- +++.+..+.+|+.|+|++|+|+... .......+|++|++|.|+++. ++..+..++.|+.
T Consensus 231 ~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL~-----~~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 231 ENNLPI-----VPECLYKLRNLRRLNLSGNKITELN-----MTEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTK 295 (1255)
T ss_pred ccCCCc-----chHHHhhhhhhheeccCcCceeeee-----ccHHHHhhhhhhccccchhcc-----chHHHhhhHHHHH
Confidence 998886 7888888999999999999998743 222333789999999999873 4444555688999
Q ss_pred EeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHH
Q 006842 476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSF 555 (629)
Q Consensus 476 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~ 555 (629)
|++.+|+++-.++ +..+++..+|+.+...+|.+.- .|..+..|..|+.|.|++|++.. +|+++
T Consensus 296 Ly~n~NkL~FeGi---PSGIGKL~~Levf~aanN~LEl-----------VPEglcRC~kL~kL~L~~NrLiT---LPeaI 358 (1255)
T KOG0444|consen 296 LYANNNKLTFEGI---PSGIGKLIQLEVFHAANNKLEL-----------VPEGLCRCVKLQKLKLDHNRLIT---LPEAI 358 (1255)
T ss_pred HHhccCcccccCC---ccchhhhhhhHHHHhhcccccc-----------CchhhhhhHHHHHhcccccceee---chhhh
Confidence 9999999865543 3334444889999999998864 48999999999999999998876 56666
Q ss_pred hhhhcccceeecCCCC
Q 006842 556 KVVNEALTSIDLAFNE 571 (629)
Q Consensus 556 ~~~~~~L~~LdLs~N~ 571 (629)
.-+ +.|+.||+..|.
T Consensus 359 HlL-~~l~vLDlreNp 373 (1255)
T KOG0444|consen 359 HLL-PDLKVLDLRENP 373 (1255)
T ss_pred hhc-CCcceeeccCCc
Confidence 533 889999999983
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1.5e-27 Score=229.05 Aligned_cols=391 Identities=20% Similarity=0.247 Sum_probs=234.5
Q ss_pred HHHHHHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCCh
Q 006842 153 TLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGD 232 (629)
Q Consensus 153 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 232 (629)
.+.+=++.+..+..|++++|++.. ++.++.....++.++.++|+++.. +..+....+|+.++.++|.+..
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~~-----lp~aig~l~~l~~l~vs~n~ls~l-----p~~i~s~~~l~~l~~s~n~~~e 128 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLSQ-----LPAAIGELEALKSLNVSHNKLSEL-----PEQIGSLISLVKLDCSSNELKE 128 (565)
T ss_pred hccHhhhcccceeEEEeccchhhh-----CCHHHHHHHHHHHhhcccchHhhc-----cHHHhhhhhhhhhhccccceee
Confidence 333445567778888888887655 344445556777778887776432 2333344457777777776543
Q ss_pred hHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcC-----------------------CCccEEEeccCCCChh
Q 006842 233 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNN-----------------------SILRVLELNNNMIDYS 289 (629)
Q Consensus 233 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-----------------------~~L~~L~L~~n~i~~~ 289 (629)
+.+.+.++..++.++..+|+++.. +..+..+ +.|++||...|.+
T Consensus 129 -----l~~~i~~~~~l~dl~~~~N~i~sl-----p~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--- 195 (565)
T KOG0472|consen 129 -----LPDSIGRLLDLEDLDATNNQISSL-----PEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--- 195 (565)
T ss_pred -----cCchHHHHhhhhhhhccccccccC-----chHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh---
Confidence 223333445556666666655542 2222222 4455555555555
Q ss_pred hHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCC
Q 006842 290 GFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN 369 (629)
Q Consensus 290 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 369 (629)
+.+++.++.+.+|+.|++..|+|...+ .|.+|..|++|+++.|+|.- ++......++.+..||+..|
T Consensus 196 --~tlP~~lg~l~~L~~LyL~~Nki~~lP------ef~gcs~L~Elh~g~N~i~~-----lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 196 --ETLPPELGGLESLELLYLRRNKIRFLP------EFPGCSLLKELHVGENQIEM-----LPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred --hcCChhhcchhhhHHHHhhhcccccCC------CCCccHHHHHHHhcccHHHh-----hHHHHhcccccceeeecccc
Confidence 455666666667777777777665543 36678888888888887765 44444467788999999999
Q ss_pred CCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHH-------HHHHHHhh--
Q 006842 370 SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA-------SAIARVLK-- 440 (629)
Q Consensus 370 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-------~~l~~~l~-- 440 (629)
++++ +|..+..+.+|++||+++|.|+. ++..++++ +|+.|-+.||.+....- ..+-..+.
T Consensus 263 klke-----~Pde~clLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~ 331 (565)
T KOG0472|consen 263 KLKE-----VPDEICLLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSK 331 (565)
T ss_pred cccc-----CchHHHHhhhhhhhcccCCcccc-----CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHh
Confidence 9998 78888889999999999999988 77788888 89999999998754311 11111111
Q ss_pred ----------------------------cCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHH---
Q 006842 441 ----------------------------DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE--- 489 (629)
Q Consensus 441 ----------------------------~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--- 489 (629)
...+.+.|++++-++++.+.+.|-..- -.-.+..+++.|++...+..
T Consensus 332 ~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~--~~~Vt~VnfskNqL~elPk~L~~ 409 (565)
T KOG0472|consen 332 IKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK--SEIVTSVNFSKNQLCELPKRLVE 409 (565)
T ss_pred hccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhh--hcceEEEecccchHhhhhhhhHH
Confidence 123345566666555555444443221 11244555555554322110
Q ss_pred ----------------HHHHHHhcCCCcCEEEcccCCCCcccccc-------------CCCchhhhHHHHhhhhhhhhhh
Q 006842 490 ----------------FVADMLRYNNTISILDLRANGLRDEVCSG-------------CNGLSFFHSAIYSLKHMLFYSL 540 (629)
Q Consensus 490 ----------------~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~-------------~~~l~~~~~~~~~l~~L~~L~L 540 (629)
+.+..++..++|..|+|++|-+.+. |.. .+.+...|..+..+..++.+-.
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtlla 488 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLA 488 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-chhhhhhhhhheecccccccccchHHHhhHHHHHHHHh
Confidence 0111233446666677766665544 000 0111122444444444444444
Q ss_pred hhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccc
Q 006842 541 CINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLT 603 (629)
Q Consensus 541 s~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~ 603 (629)
++|++..+. +.++..+ .+|+.|||.+|.|.. +|..++.+ .+|++|+++||+|.
T Consensus 489 s~nqi~~vd--~~~l~nm-~nL~tLDL~nNdlq~-IPp~Lgnm------tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 489 SNNQIGSVD--PSGLKNM-RNLTTLDLQNNDLQQ-IPPILGNM------TNLRHLELDGNPFR 541 (565)
T ss_pred ccccccccC--hHHhhhh-hhcceeccCCCchhh-CChhhccc------cceeEEEecCCccC
Confidence 444444332 2223333 789999999999887 67777776 67999999999998
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=6.5e-26 Score=238.89 Aligned_cols=390 Identities=19% Similarity=0.208 Sum_probs=227.8
Q ss_pred HHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHH
Q 006842 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (629)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 236 (629)
++++.-+|++|||++|++.+. +..+....+|+.|+++.|.|.... ....++.+|++++|.+|.+..
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~f-----p~~it~l~~L~~ln~s~n~i~~vp-----~s~~~~~~l~~lnL~~n~l~~---- 105 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSF-----PIQITLLSHLRQLNLSRNYIRSVP-----SSCSNMRNLQYLNLKNNRLQS---- 105 (1081)
T ss_pred HhhheeeeEEeeccccccccC-----CchhhhHHHHhhcccchhhHhhCc-----hhhhhhhcchhheeccchhhc----
Confidence 333455599999999988774 444555578888888888775443 333466778888888887653
Q ss_pred HHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCC-------------------ccEEEeccCCCChhhHHHHHHH
Q 006842 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSI-------------------LRVLELNNNMIDYSGFTSLAEA 297 (629)
Q Consensus 237 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-------------------L~~L~L~~n~i~~~~~~~l~~~ 297 (629)
++..+..+++|+.|++++|.++.. +..+..+.. ++.+++..|.+. ..+...
T Consensus 106 -lP~~~~~lknl~~LdlS~N~f~~~-----Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~----~~~~~~ 175 (1081)
T KOG0618|consen 106 -LPASISELKNLQYLDLSFNHFGPI-----PLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLG----GSFLID 175 (1081)
T ss_pred -CchhHHhhhcccccccchhccCCC-----chhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcc----cchhcc
Confidence 345556668888888888876642 111111122 344444444433 112222
Q ss_pred HhhcCCccEEeccCCCCChhhHHHHHH-------------HhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEE
Q 006842 298 LLENSTIRSLHLNGNYGGALGANALAK-------------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364 (629)
Q Consensus 298 l~~~~~L~~L~L~~n~i~~~~~~~l~~-------------~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L 364 (629)
+..+.. .|+|.+|.+.......+.. .-...++++.|+.++|.++.... . ....+|+++
T Consensus 176 i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~----~---p~p~nl~~~ 246 (1081)
T KOG0618|consen 176 IYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV----H---PVPLNLQYL 246 (1081)
T ss_pred hhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc----c---cccccceee
Confidence 222222 3666666654222111100 00123456666666666653111 0 012378999
Q ss_pred EccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHH------------------HHHHHHHhcCCCccEEEeeCCC
Q 006842 365 DIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA------------------EKIADALKQNRTITTIDLGGNN 426 (629)
Q Consensus 365 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~------------------~~l~~~l~~~~~L~~L~Ls~n~ 426 (629)
+++.|+++. +++++..|.+|+.|+..+|.++.... +.++..+...+.|++|+|..|+
T Consensus 247 dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 247 DISHNNLSN-----LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred ecchhhhhc-----chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 999999888 77899999999999999998754211 1122222234456666666666
Q ss_pred CCHHHHHHHHHHh---------------------hcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCH
Q 006842 427 IHSKGASAIARVL---------------------KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (629)
Q Consensus 427 i~~~~~~~l~~~l---------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (629)
|.......+.... ..++.|+.|.+.+|.+++.....+ ....+|+.|+|++|++..
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l----~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL----VNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh----ccccceeeeeeccccccc
Confidence 5442221111000 011334455555555555433332 333566677777766666
Q ss_pred HHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhccccee
Q 006842 486 SGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSI 565 (629)
Q Consensus 486 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L 565 (629)
.....+.++ ..|++|+||+|+++.. |..+.+++.|++|...+|++... | .+..+ +.|+.+
T Consensus 398 fpas~~~kl----e~LeeL~LSGNkL~~L-----------p~tva~~~~L~tL~ahsN~l~~f---P-e~~~l-~qL~~l 457 (1081)
T KOG0618|consen 398 FPASKLRKL----EELEELNLSGNKLTTL-----------PDTVANLGRLHTLRAHSNQLLSF---P-ELAQL-PQLKVL 457 (1081)
T ss_pred CCHHHHhch----HHhHHHhcccchhhhh-----------hHHHHhhhhhHHHhhcCCceeec---h-hhhhc-CcceEE
Confidence 555555554 6666677777666644 67777888888888888877664 3 22223 889999
Q ss_pred ecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHHHHHH
Q 006842 566 DLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAK 614 (629)
Q Consensus 566 dLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~ 614 (629)
|+|.|+++........ +.++|++|||+||.-...+...|..+.
T Consensus 458 DlS~N~L~~~~l~~~~------p~p~LkyLdlSGN~~l~~d~~~l~~l~ 500 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEAL------PSPNLKYLDLSGNTRLVFDHKTLKVLK 500 (1081)
T ss_pred ecccchhhhhhhhhhC------CCcccceeeccCCcccccchhhhHHhh
Confidence 9999999875443332 225899999999975555555554433
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=2e-25 Score=214.40 Aligned_cols=365 Identities=20% Similarity=0.200 Sum_probs=246.3
Q ss_pred HHHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHH
Q 006842 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV 235 (629)
Q Consensus 156 ~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 235 (629)
+-+..+..+..++.++|.+.. +.+.+..+..++.++..+|+|+... ..+..+.+|..+++.+|.+.....
T Consensus 108 ~~i~s~~~l~~l~~s~n~~~e-----l~~~i~~~~~l~dl~~~~N~i~slp-----~~~~~~~~l~~l~~~~n~l~~l~~ 177 (565)
T KOG0472|consen 108 EQIGSLISLVKLDCSSNELKE-----LPDSIGRLLDLEDLDATNNQISSLP-----EDMVNLSKLSKLDLEGNKLKALPE 177 (565)
T ss_pred HHHhhhhhhhhhhccccceee-----cCchHHHHhhhhhhhccccccccCc-----hHHHHHHHHHHhhccccchhhCCH
Confidence 334455666677777766544 3445555667777777777775432 222234448888888888876544
Q ss_pred HHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCC
Q 006842 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (629)
Q Consensus 236 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 315 (629)
..+. ++.|++||..+|.++. ++.-++.+..|+-|+|..|+| ..++ .|..|..|++|+++.|.|.
T Consensus 178 ~~i~-----m~~L~~ld~~~N~L~t-----lP~~lg~l~~L~~LyL~~Nki-----~~lP-ef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 178 NHIA-----MKRLKHLDCNSNLLET-----LPPELGGLESLELLYLRRNKI-----RFLP-EFPGCSLLKELHVGENQIE 241 (565)
T ss_pred HHHH-----HHHHHhcccchhhhhc-----CChhhcchhhhHHHHhhhccc-----ccCC-CCCccHHHHHHHhcccHHH
Confidence 3333 4789999999887765 666677778899999999999 4445 6778999999999999988
Q ss_pred hhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEcc
Q 006842 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (629)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 395 (629)
..++ +...+++++..||+..|+++....... -+.+|+.||+++|.|+. ++..++++ +|+.|.+.
T Consensus 242 ~lpa----e~~~~L~~l~vLDLRdNklke~Pde~c------lLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 242 MLPA----EHLKHLNSLLVLDLRDNKLKEVPDEIC------LLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLALE 305 (565)
T ss_pred hhHH----HHhcccccceeeeccccccccCchHHH------HhhhhhhhcccCCcccc-----CCcccccc-eeeehhhc
Confidence 7776 345589999999999999987432222 34469999999999999 77888888 99999999
Q ss_pred CCCCChH-------HHHHHHHHH------------------------------hcCCCccEEEeeCCCCCHHHHHHHHHH
Q 006842 396 MNDIGDE-------GAEKIADAL------------------------------KQNRTITTIDLGGNNIHSKGASAIARV 438 (629)
Q Consensus 396 ~n~l~~~-------~~~~l~~~l------------------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 438 (629)
+|.+... |.+.+...+ ....+.+.|++++-+++....+.|-.+
T Consensus 306 GNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~ 385 (565)
T KOG0472|consen 306 GNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA 385 (565)
T ss_pred CCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh
Confidence 9987432 111111111 112356677777777776544444322
Q ss_pred hhcCCcccEEECcCCCCChhHH-------------------HHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCC
Q 006842 439 LKDNSVITSLDLAYNPIGADGA-------------------KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNN 499 (629)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~-------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 499 (629)
.-.-.+..+++.|++...+. .+.+..++..++|..|+|++|.+.+.+.+. ... .
T Consensus 386 --~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~-~~l----v 458 (565)
T KOG0472|consen 386 --KSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM-GSL----V 458 (565)
T ss_pred --hhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhh-hhh----h
Confidence 11235666777766543221 112223355678888888888876654333 333 5
Q ss_pred CcCEEEcccCCCCccccccC-------------CCchhh-hHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhccccee
Q 006842 500 TISILDLRANGLRDEVCSGC-------------NGLSFF-HSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSI 565 (629)
Q Consensus 500 ~L~~L~Ls~N~l~~~~~~~~-------------~~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L 565 (629)
.|++||++.|++... |.-+ +.+... ++.+.++.+|..|||.+|.+..+ |..+..+ .+|++|
T Consensus 459 ~Lq~LnlS~NrFr~l-P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I---Pp~Lgnm-tnL~hL 533 (565)
T KOG0472|consen 459 RLQTLNLSFNRFRML-PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI---PPILGNM-TNLRHL 533 (565)
T ss_pred hhheecccccccccc-hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC---Chhhccc-cceeEE
Confidence 588888888877543 2211 333333 44599999999999999988875 4444444 899999
Q ss_pred ecCCCCCCc
Q 006842 566 DLAFNEIRD 574 (629)
Q Consensus 566 dLs~N~i~~ 574 (629)
+|.+|.|..
T Consensus 534 eL~gNpfr~ 542 (565)
T KOG0472|consen 534 ELDGNPFRQ 542 (565)
T ss_pred EecCCccCC
Confidence 999999984
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=4.8e-23 Score=217.46 Aligned_cols=384 Identities=17% Similarity=0.140 Sum_probs=213.1
Q ss_pred CccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHH
Q 006842 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (629)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 242 (629)
.++.|+++.|.+-+..++.+.. +-+|+.||+++|.+++- +..+....+|+.|+++.|.|.... ...
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~----~v~L~~l~lsnn~~~~f-----p~~it~l~~L~~ln~s~n~i~~vp-----~s~ 87 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEK----RVKLKSLDLSNNQISSF-----PIQITLLSHLRQLNLSRNYIRSVP-----SSC 87 (1081)
T ss_pred HHHhhhccccccccCchHHhhh----eeeeEEeeccccccccC-----CchhhhHHHHhhcccchhhHhhCc-----hhh
Confidence 3778888888765544443333 45699999999987653 333334455899999998876543 334
Q ss_pred hhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCC-CCChhhHHH
Q 006842 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN-YGGALGANA 321 (629)
Q Consensus 243 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~ 321 (629)
..+.+|++|+|.+|.+.. ++..+..+++|+.|++++|.+. .++..+..+..++.+..++| .+...+...
T Consensus 88 ~~~~~l~~lnL~~n~l~~-----lP~~~~~lknl~~LdlS~N~f~-----~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ 157 (1081)
T KOG0618|consen 88 SNMRNLQYLNLKNNRLQS-----LPASISELKNLQYLDLSFNHFG-----PIPLVIEVLTAEEELAASNNEKIQRLGQTS 157 (1081)
T ss_pred hhhhcchhheeccchhhc-----CchhHHhhhcccccccchhccC-----CCchhHHhhhHHHHHhhhcchhhhhhcccc
Confidence 456889999999887764 5666777788999999999884 33445555555666666665 111111100
Q ss_pred HH-----------HHhcCCCCcc-EEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCc
Q 006842 322 LA-----------KGLEGNKSLR-ELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389 (629)
Q Consensus 322 l~-----------~~l~~~~~L~-~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L 389 (629)
+. ........++ .|+|.+|.+..... ..+.+|+.|....|++... --..++|
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl--------s~~~~l~~l~c~rn~ls~l--------~~~g~~l 221 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL--------SNLANLEVLHCERNQLSEL--------EISGPSL 221 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhheeeecccchhhhhhh--------hhccchhhhhhhhcccceE--------EecCcch
Confidence 00 0000111222 35666665542211 1222344444444444331 0123566
Q ss_pred cEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhc
Q 006842 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 469 (629)
Q Consensus 390 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 469 (629)
+.|+.++|.++.. . .-....+|+++++++|+++. +++++..|.+|+.++..+|.+.......+.
T Consensus 222 ~~L~a~~n~l~~~----~--~~p~p~nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l~~lp~ri~~----- 285 (1081)
T KOG0618|consen 222 TALYADHNPLTTL----D--VHPVPLNLQYLDISHNNLSN-----LPEWIGACANLEALNANHNRLVALPLRISR----- 285 (1081)
T ss_pred heeeeccCcceee----c--cccccccceeeecchhhhhc-----chHHHHhcccceEecccchhHHhhHHHHhh-----
Confidence 6677777766532 1 11123567777777777766 455666667777777777776433222221
Q ss_pred CCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccC--------------CCchhhh-HHHHhhhh
Q 006842 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGC--------------NGLSFFH-SAIYSLKH 534 (629)
Q Consensus 470 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~--------------~~l~~~~-~~~~~l~~ 534 (629)
..+|+.|...+|.+... ...++..+.|++|||..|+|...-+..+ ..+...| ..=...+.
T Consensus 286 ~~~L~~l~~~~nel~yi-----p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~ 360 (1081)
T KOG0618|consen 286 ITSLVSLSAAYNELEYI-----PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAA 360 (1081)
T ss_pred hhhHHHHHhhhhhhhhC-----CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHH
Confidence 23455555555544222 1111222455555555555543311000 1111111 12234567
Q ss_pred hhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHHHHHH
Q 006842 535 MLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAK 614 (629)
Q Consensus 535 L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~ 614 (629)
|+.|++.+|+++..... .+. ...+|+.|+|++|+++......+.++ ..|++|+||||+++.++ ..++.+.
T Consensus 361 Lq~LylanN~Ltd~c~p--~l~-~~~hLKVLhLsyNrL~~fpas~~~kl------e~LeeL~LSGNkL~~Lp-~tva~~~ 430 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFP--VLV-NFKHLKVLHLSYNRLNSFPASKLRKL------EELEELNLSGNKLTTLP-DTVANLG 430 (1081)
T ss_pred HHHHHHhcCcccccchh--hhc-cccceeeeeecccccccCCHHHHhch------HHhHHHhcccchhhhhh-HHHHhhh
Confidence 88888888888764211 121 22778888888888887555555555 36888888888888766 5666655
Q ss_pred HHh
Q 006842 615 DLV 617 (629)
Q Consensus 615 ~l~ 617 (629)
.+.
T Consensus 431 ~L~ 433 (1081)
T KOG0618|consen 431 RLH 433 (1081)
T ss_pred hhH
Confidence 543
No 15
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.84 E-value=7e-21 Score=198.66 Aligned_cols=416 Identities=29% Similarity=0.390 Sum_probs=337.4
Q ss_pred HHHHHHhcCCccEEEccCCCCCHHH---HHHHHHHhccCCC----ccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEcc
Q 006842 154 LNEFAKELRAFSSVDMSGRNFGDEG---LFFLAESLGYNQT----AEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLS 226 (629)
Q Consensus 154 l~~~~~~~~~L~~L~Ls~~~l~~~~---~~~l~~~l~~~~~----L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 226 (629)
+......-+.+..+.+..+...+.+ .-.....+..... +..|.|.+|.+.+.+...+...+..+.+|..|+++
T Consensus 44 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~ 123 (478)
T KOG4308|consen 44 LRSLLRRNTTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLS 123 (478)
T ss_pred HHHhhhhccchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcc
Confidence 3344445566777777777665555 2222223333222 88899999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHhhC-CCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhh----c
Q 006842 227 GNPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE----N 301 (629)
Q Consensus 227 ~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~----~ 301 (629)
+|.+++.+...++..+... +.++.|++..|.++..+...+.+.+..+..++.++++.|.+...+...++..+.. .
T Consensus 124 ~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~ 203 (478)
T KOG4308|consen 124 GNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPL 203 (478)
T ss_pred cCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhccc
Confidence 9999999999999998886 7888999999999999999999999888999999999999988888888888875 7
Q ss_pred CCccEEeccCCCCChhhHHHHHHHhcCCCC-ccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHH
Q 006842 302 STIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 380 (629)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 380 (629)
.++++|++++|.++......+...+...+. +.+|++..|.+.+.++..+...+....+.+++++++.|.|++.+...+.
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 899999999999999888888888888887 8889999999999999999888876556889999999999999999999
Q ss_pred HHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCC-CCHHHHHHHHHHhhcCCcccEEECcCCCCChhH
Q 006842 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (629)
Q Consensus 381 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (629)
+.+..++.++++.++.|.+.+.+...+.+.+.....+.++-+.++. .+..+...+.........+.....+++...+.+
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEG 363 (478)
T ss_pred HHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHH
Confidence 9999999999999999999999999999988888888888888664 444444445555555455666778888888887
Q ss_pred HHHHHHHHhcCC-CccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhh
Q 006842 460 AKALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFY 538 (629)
Q Consensus 460 ~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L 538 (629)
...+........ .+..+++..+.+...+...+...+..+..+..++++.|...+.
T Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~------------------------ 419 (478)
T KOG4308|consen 364 LALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDE------------------------ 419 (478)
T ss_pred HHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchh------------------------
Confidence 777766655443 3778888888888888888888888888999999999988776
Q ss_pred hhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccch
Q 006842 539 SLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 604 (629)
Q Consensus 539 ~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 604 (629)
+...+........ .++.++++.|.++..+.....+....++ ....+.+.+|.++-
T Consensus 420 --------~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 474 (478)
T KOG4308|consen 420 --------GAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQRALALNP--GILAIRLRGNVIGR 474 (478)
T ss_pred --------hHHHHHHhhhhcc-cchhhhhccChhhhcchHHHHHHHhcCC--CcceeecccCcccc
Confidence 4444444444343 7889999999999988888888887666 57888888887654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=6.7e-20 Score=199.97 Aligned_cols=267 Identities=18% Similarity=0.161 Sum_probs=152.2
Q ss_pred CCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHH
Q 006842 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (629)
Q Consensus 218 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 297 (629)
..-..|+++++.++.. +..+. .+|+.|++.+|+++.. +. ..++|++|++++|+|+. ++.
T Consensus 201 ~~~~~LdLs~~~LtsL-----P~~l~--~~L~~L~L~~N~Lt~L-----P~---lp~~Lk~LdLs~N~Lts-----LP~- 259 (788)
T PRK15387 201 NGNAVLNVGESGLTTL-----PDCLP--AHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGNQLTS-----LPV- 259 (788)
T ss_pred CCCcEEEcCCCCCCcC-----Ccchh--cCCCEEEccCCcCCCC-----CC---CCCCCcEEEecCCccCc-----ccC-
Confidence 3456777777777642 22221 4677777777777652 22 13567777777777753 221
Q ss_pred HhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHH
Q 006842 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377 (629)
Q Consensus 298 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 377 (629)
..++|+.|++++|.++.++. ..+.|+.|++++|+++. ++. ..++|+.|++++|+++..
T Consensus 260 --lp~sL~~L~Ls~N~L~~Lp~--------lp~~L~~L~Ls~N~Lt~-----LP~----~p~~L~~LdLS~N~L~~L--- 317 (788)
T PRK15387 260 --LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTS-----LPV----LPPGLQELSVSDNQLASL--- 317 (788)
T ss_pred --cccccceeeccCCchhhhhh--------chhhcCEEECcCCcccc-----ccc----cccccceeECCCCccccC---
Confidence 13567777777777654432 12456677777777664 221 123577777777777652
Q ss_pred HHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCCh
Q 006842 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (629)
Q Consensus 378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (629)
+. ...+|+.|++++|.++. ++.. ..+|++|+|++|+|+. ++.. .++|+.|++++|.|..
T Consensus 318 --p~---lp~~L~~L~Ls~N~L~~-----LP~l---p~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 318 --PA---LPSELCKLWAYNNQLTS-----LPTL---PSGLQELSVSDNQLAS-----LPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred --CC---CcccccccccccCcccc-----cccc---ccccceEecCCCccCC-----CCCC---Ccccceehhhcccccc
Confidence 21 12356677777777664 2221 1367777777777765 2221 2456677777777663
Q ss_pred hHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhh
Q 006842 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLF 537 (629)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~ 537 (629)
.. .. ..+|+.|++++|.|+.... . .++|+.|++++|++... |.. ..+|+.
T Consensus 377 LP-----~l---~~~L~~LdLs~N~Lt~LP~-----l---~s~L~~LdLS~N~LssI-----------P~l---~~~L~~ 426 (788)
T PRK15387 377 LP-----AL---PSGLKELIVSGNRLTSLPV-----L---PSELKELMVSGNRLTSL-----------PML---PSGLLS 426 (788)
T ss_pred Cc-----cc---ccccceEEecCCcccCCCC-----c---ccCCCEEEccCCcCCCC-----------Ccc---hhhhhh
Confidence 21 11 1457777777777654321 1 15677777777776643 211 234566
Q ss_pred hhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHH
Q 006842 538 YSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQ 582 (629)
Q Consensus 538 L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~ 582 (629)
|++++|+|+. +|..+..+ ++|+.|+|++|.+++..+..+..
T Consensus 427 L~Ls~NqLt~---LP~sl~~L-~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 427 LSVYRNQLTR---LPESLIHL-SSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred hhhccCcccc---cChHHhhc-cCCCeEECCCCCCCchHHHHHHH
Confidence 7777776664 34444333 56777777777777666555533
No 17
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.78 E-value=6.5e-19 Score=184.00 Aligned_cols=368 Identities=27% Similarity=0.362 Sum_probs=314.4
Q ss_pred cchhhHHHHHHHHHhcCCccEEEccCCCCCHHHHHHHHHHhccC-CCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEE
Q 006842 146 LFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLN 224 (629)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~ 224 (629)
+.+...+.+...++...+|+.|++++|.+++.+...+++.+.+. ..++.|++..|.++..+...+...+..+..++.++
T Consensus 99 l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~ 178 (478)
T KOG4308|consen 99 LGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELD 178 (478)
T ss_pred cccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHH
Confidence 34447788889999999999999999999999999999999987 78899999999999999999999998899999999
Q ss_pred ccCCCCChhHHHHHHHHHhh----CCCCCEEEeeccCCChHHHHHHHHHHhcCCC-ccEEEeccCCCChhhHHHHHHHHh
Q 006842 225 LSGNPIGDEGVKCLCDILVD----NAGVERLQLSSVDLRDEGAKAIAELLKNNSI-LRVLELNNNMIDYSGFTSLAEALL 299 (629)
Q Consensus 225 Ls~n~i~~~~~~~l~~~l~~----~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~ 299 (629)
++.|.+...+...++..+.. ..++++|++++|.++..++..+...+...+. +..|++..|.+.+.++..+...+.
T Consensus 179 l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~ 258 (478)
T KOG4308|consen 179 LSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLS 258 (478)
T ss_pred HHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhc
Confidence 99999988888888888875 7889999999999999999988888887777 788999999999999999999888
Q ss_pred hc-CCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCC-CCchhHH
Q 006842 300 EN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAF 377 (629)
Q Consensus 300 ~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~ 377 (629)
.. ..++.+++..|.|++.+...+++.+..++.+++|.++.|.+.+.+...+.+.+.... .+.++-+.++. .+..+..
T Consensus 259 ~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~ 337 (478)
T KOG4308|consen 259 VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKT-PLLHLVLGGTGKGTRGGTS 337 (478)
T ss_pred ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcc-cchhhhccccCccchhHHH
Confidence 87 789999999999999999999999999999999999999999999988888887555 46666666544 4444444
Q ss_pred HHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCC-CccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCC
Q 006842 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNR-TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
.+.........+.....+++...+++...+.......+ .+..+++..+.+...+...++..+..++.+..++++.|...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~ 417 (478)
T KOG4308|consen 338 VLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLH 417 (478)
T ss_pred HHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccc
Confidence 45555455555666677777888887777766666544 37788999999998888889999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 457 ADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 457 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
+.+...+....+....++.+.++.|.++..+...........+......+..|.++-.
T Consensus 418 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (478)
T KOG4308|consen 418 DEGAEVLTEQLSRNGSLKALRLSRNPITALGTEELQRALALNPGILAIRLRGNVIGRA 475 (478)
T ss_pred hhhHHHHHHhhhhcccchhhhhccChhhhcchHHHHHHHhcCCCcceeecccCccccc
Confidence 9988888887776669999999999999999999999888889999999988877644
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=3.9e-20 Score=178.06 Aligned_cols=413 Identities=18% Similarity=0.186 Sum_probs=262.9
Q ss_pred hhhHHHHHHHHHhc-CCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEcc
Q 006842 148 RESKQTLNEFAKEL-RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLS 226 (629)
Q Consensus 148 ~~~~~~l~~~~~~~-~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 226 (629)
+.+.+.+.++..++ +.-.+++|..|+|+... ..+|+..++|+.|||++|.|+.++.++|.++-. |.+|-+.
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP----~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~----l~~Lvly 123 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIP----PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLAS----LLSLVLY 123 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCCcccCC----hhhccchhhhceecccccchhhcChHhhhhhHh----hhHHHhh
Confidence 33344444554455 44779999999998876 456677799999999999999999888876544 6655555
Q ss_pred C-CCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHH-HHhhcCCc
Q 006842 227 G-NPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTI 304 (629)
Q Consensus 227 ~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L 304 (629)
+ |+|++..-..+.. +..++.|.+.-|++.-.-.. .+..+++|..|.+.+|.+ +.+++ .+..+..+
T Consensus 124 g~NkI~~l~k~~F~g----L~slqrLllNan~i~Cir~~----al~dL~~l~lLslyDn~~-----q~i~~~tf~~l~~i 190 (498)
T KOG4237|consen 124 GNNKITDLPKGAFGG----LSSLQRLLLNANHINCIRQD----ALRDLPSLSLLSLYDNKI-----QSICKGTFQGLAAI 190 (498)
T ss_pred cCCchhhhhhhHhhh----HHHHHHHhcChhhhcchhHH----HHHHhhhcchhcccchhh-----hhhccccccchhcc
Confidence 5 9999886554443 48889999999988876444 444558899999999988 55565 56667888
Q ss_pred cEEeccCCC-CChhhHHHHHH-------HhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhH
Q 006842 305 RSLHLNGNY-GGALGANALAK-------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA 376 (629)
Q Consensus 305 ~~L~L~~n~-i~~~~~~~l~~-------~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 376 (629)
+.+.+..|. +.+-....+++ .++...-..-..+.+.++..+....+...+. .+..=-.+.+.+...+
T Consensus 191 ~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e----sl~s~~~~~d~~d~~c- 265 (498)
T KOG4237|consen 191 KTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE----SLPSRLSSEDFPDSIC- 265 (498)
T ss_pred chHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH----hHHHhhccccCcCCcC-
Confidence 999888876 32222222222 2223333344445555555544444432211 1111112233333322
Q ss_pred HHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCC
Q 006842 377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 377 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
-...|+.+++|+.|+|++|+|+.. -..+|.....++.|.|..|+|....- .++.++..|+.|+|++|+|+
T Consensus 266 --P~~cf~~L~~L~~lnlsnN~i~~i----~~~aFe~~a~l~eL~L~~N~l~~v~~----~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 266 --PAKCFKKLPNLRKLNLSNNKITRI----EDGAFEGAAELQELYLTRNKLEFVSS----GMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred --hHHHHhhcccceEeccCCCccchh----hhhhhcchhhhhhhhcCcchHHHHHH----HhhhccccceeeeecCCeeE
Confidence 345688999999999999999886 44566677899999999999887643 34555689999999999998
Q ss_pred hhHHHHHHHHHhcCCCccEEeccCCCCC-HHHHHHHHHHHhcCC-----------CcCEEEcccCCCCccccc---cCCC
Q 006842 457 ADGAKALSEVLKFHGNINTLKLGWCQIG-ASGAEFVADMLRYNN-----------TISILDLRANGLRDEVCS---GCNG 521 (629)
Q Consensus 457 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~l~~~~-----------~L~~L~Ls~N~l~~~~~~---~~~~ 521 (629)
......|-.. ..|.+|+|-.|.+. +-...++.++++... .++.++++.+.+.+.-.. ..+-
T Consensus 336 ~~~~~aF~~~----~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~ 411 (498)
T KOG4237|consen 336 TVAPGAFQTL----FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGC 411 (498)
T ss_pred EEeccccccc----ceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCC
Confidence 7766665444 67889998887754 334566777765332 466777777766554221 1111
Q ss_pred chhhhHHHHhhhhhhhh-hhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCC
Q 006842 522 LSFFHSAIYSLKHMLFY-SLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 600 (629)
Q Consensus 522 l~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N 600 (629)
.. .+..=..++-+.+. ..++..++ .+|..+. ..-++|++.+|.++. +|..... +| .+|+++|
T Consensus 412 ~~-s~~cP~~c~c~~tVvRcSnk~lk---~lp~~iP---~d~telyl~gn~~~~-vp~~~~~--------~l-~~dls~n 474 (498)
T KOG4237|consen 412 LT-SSPCPPPCTCLDTVVRCSNKLLK---LLPRGIP---VDVTELYLDGNAITS-VPDELLR--------SL-LLDLSNN 474 (498)
T ss_pred CC-CCCCCCCcchhhhhHhhcccchh---hcCCCCC---chhHHHhcccchhcc-cCHHHHh--------hh-hcccccC
Confidence 10 11111122333322 23333222 2444432 456788888998887 4444222 46 7899999
Q ss_pred ccchhHHHHHHHHHHHh
Q 006842 601 FLTKFGQSALTDAKDLV 617 (629)
Q Consensus 601 ~i~~~~~~~l~~~~~l~ 617 (629)
+|+...-..|.++.++.
T Consensus 475 ~i~~Lsn~tf~n~tql~ 491 (498)
T KOG4237|consen 475 RISSLSNYTFSNMTQLS 491 (498)
T ss_pred ceehhhcccccchhhhh
Confidence 98888887887777653
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=3.2e-18 Score=186.92 Aligned_cols=270 Identities=16% Similarity=0.142 Sum_probs=190.8
Q ss_pred HHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCC
Q 006842 179 LFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDL 258 (629)
Q Consensus 179 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l 258 (629)
+..+..++. ..-..|+++++.++... ..+. ++|+.|++++|+|+... .. .++|++|++++|+|
T Consensus 192 ~~r~~~Cl~--~~~~~LdLs~~~LtsLP-----~~l~--~~L~~L~L~~N~Lt~LP-----~l---p~~Lk~LdLs~N~L 254 (788)
T PRK15387 192 VQKMRACLN--NGNAVLNVGESGLTTLP-----DCLP--AHITTLVIPDNNLTSLP-----AL---PPELRTLEVSGNQL 254 (788)
T ss_pred HHHHHHHhc--CCCcEEEcCCCCCCcCC-----cchh--cCCCEEEccCCcCCCCC-----CC---CCCCcEEEecCCcc
Confidence 334444433 45678899999887432 2111 35899999999887532 21 47899999999998
Q ss_pred ChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEcc
Q 006842 259 RDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338 (629)
Q Consensus 259 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 338 (629)
+.. +.. .++|+.|++++|.++ .++.. ..+|+.|++++|.++.++. ..++|++|+++
T Consensus 255 tsL-----P~l---p~sL~~L~Ls~N~L~-----~Lp~l---p~~L~~L~Ls~N~Lt~LP~--------~p~~L~~LdLS 310 (788)
T PRK15387 255 TSL-----PVL---PPGLLELSIFSNPLT-----HLPAL---PSGLCKLWIFGNQLTSLPV--------LPPGLQELSVS 310 (788)
T ss_pred Ccc-----cCc---ccccceeeccCCchh-----hhhhc---hhhcCEEECcCCccccccc--------cccccceeECC
Confidence 863 221 257899999999884 33432 2578889999998876642 24679999999
Q ss_pred CCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCcc
Q 006842 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTIT 418 (629)
Q Consensus 339 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~ 418 (629)
+|+++. +.. ...+|+.|++++|.++. ++. ...+|++|+|++|+|+. ++.. ..+|+
T Consensus 311 ~N~L~~-----Lp~----lp~~L~~L~Ls~N~L~~-----LP~---lp~~Lq~LdLS~N~Ls~-----LP~l---p~~L~ 365 (788)
T PRK15387 311 DNQLAS-----LPA----LPSELCKLWAYNNQLTS-----LPT---LPSGLQELSVSDNQLAS-----LPTL---PSELY 365 (788)
T ss_pred CCcccc-----CCC----CcccccccccccCcccc-----ccc---cccccceEecCCCccCC-----CCCC---Ccccc
Confidence 998876 221 11258889999998886 332 12478999999998886 3332 35788
Q ss_pred EEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcC
Q 006842 419 TIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYN 498 (629)
Q Consensus 419 ~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 498 (629)
.|++++|+|+. ++.. ..+|+.|++++|+|+.... ..++|+.|++++|.++.... . .
T Consensus 366 ~L~Ls~N~L~~-----LP~l---~~~L~~LdLs~N~Lt~LP~--------l~s~L~~LdLS~N~LssIP~-----l---~ 421 (788)
T PRK15387 366 KLWAYNNRLTS-----LPAL---PSGLKELIVSGNRLTSLPV--------LPSELKELMVSGNRLTSLPM-----L---P 421 (788)
T ss_pred eehhhcccccc-----Cccc---ccccceEEecCCcccCCCC--------cccCCCEEEccCCcCCCCCc-----c---h
Confidence 89999998885 3332 2578999999998874321 12578999999999875432 1 1
Q ss_pred CCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhH
Q 006842 499 NTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAK 549 (629)
Q Consensus 499 ~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 549 (629)
.+|+.|++++|+|+.. |..+..+++|+.|+|++|.|++..
T Consensus 422 ~~L~~L~Ls~NqLt~L-----------P~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 422 SGLLSLSVYRNQLTRL-----------PESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred hhhhhhhhccCccccc-----------ChHHhhccCCCeEECCCCCCCchH
Confidence 4678899999998844 778888999999999999998753
No 20
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.73 E-value=7.1e-17 Score=148.26 Aligned_cols=260 Identities=19% Similarity=0.197 Sum_probs=182.7
Q ss_pred hHHHHHHHHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCC---H---HHHHHHHHHhhcCCCcCEE
Q 006842 150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGIT---A---AGIKAFDGVLQSNIALKTL 223 (629)
Q Consensus 150 ~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~---~---~~~~~l~~~l~~~~~L~~L 223 (629)
+.+..-+-+..+..+++++||||.|+.+.++.+++.+..-.+|+..+++.-..+ + ..+..+..++-.|+.|+..
T Consensus 18 Dvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v 97 (388)
T COG5238 18 DVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKV 97 (388)
T ss_pred hhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceee
Confidence 344444555568899999999999999999999999999999999999875432 1 2234455666778888888
Q ss_pred EccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCC
Q 006842 224 NLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST 303 (629)
Q Consensus 224 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 303 (629)
+||.|.++......+.+++.....|++|.+++|.++..+...+...+.. |..|+ -...-+.
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~--------la~nK-----------Kaa~kp~ 158 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFH--------LAYNK-----------KAADKPK 158 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHH--------HHHHh-----------hhccCCC
Confidence 8888888877777788888888888888888888887766666655332 11111 0112356
Q ss_pred ccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHH
Q 006842 304 IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383 (629)
Q Consensus 304 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 383 (629)
|+......|++..-+....+..+..-..|+++.+..|.|..+++..+...=...+.+|+.|||..|.++..|...++.++
T Consensus 159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 66677777766665555555666555677888888888877776655432222445778888888888877777777777
Q ss_pred HcCCCccEEEccCCCCChHHHHHHHHHHhc--CCCccEEEeeCCCCC
Q 006842 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGNNIH 428 (629)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~ 428 (629)
...+.|++|.+..|-++..|...+...+.. .++|..|...+|.+.
T Consensus 239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 777777888888887777777777666654 456666666666543
No 21
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.73 E-value=3.3e-16 Score=143.96 Aligned_cols=247 Identities=21% Similarity=0.270 Sum_probs=144.0
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCC---h---HHHHHHHHHHhcCCCccEEEeccCCCChhh
Q 006842 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR---D---EGAKAIAELLKNNSILRVLELNNNMIDYSG 290 (629)
Q Consensus 217 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~---~---~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 290 (629)
...+++++||+|.|+.....+++..+.+-.+|+..+++.-..+ + .....+...+.+||.|+..+||+|.++...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4456666666666666666666666655555665555543221 1 112234444556677777777777766665
Q ss_pred HHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCC
Q 006842 291 FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370 (629)
Q Consensus 291 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 370 (629)
...+.+.+.+...|++|.+++|.++.+....+.+++..+-..+. . ...|.|++.+...|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKK---------------a-----a~kp~Le~vicgrNR 168 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKK---------------A-----ADKPKLEVVICGRNR 168 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhh---------------h-----ccCCCceEEEeccch
Confidence 56666666666666666666666665555555444332211100 1 234567777777777
Q ss_pred CCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHH-HHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEE
Q 006842 371 ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA-DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLD 449 (629)
Q Consensus 371 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~ 449 (629)
+..-.....+..+..-.+|+++.+..|.|..+|+..+. ..+..+++|+.||+..|.++..+..+++.++...+.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 76655555555555556777777777777777665443 23445667777777777777666666666666666666666
Q ss_pred CcCCCCChhHHHHHHHHHh--cCCCccEEeccCCCC
Q 006842 450 LAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQI 483 (629)
Q Consensus 450 Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i 483 (629)
+..|-++..|...+...+. ..++|..|...+|.+
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 6666666666555544432 244555555555543
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=1.1e-17 Score=183.88 Aligned_cols=252 Identities=23% Similarity=0.278 Sum_probs=153.1
Q ss_pred CCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHH
Q 006842 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (629)
Q Consensus 246 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (629)
.+...|++++++++.. +..+. +.|+.|+|++|+|+. ++..+ ..+|+.|++++|.++.++..
T Consensus 178 ~~~~~L~L~~~~LtsL-----P~~Ip--~~L~~L~Ls~N~Lts-----LP~~l--~~nL~~L~Ls~N~LtsLP~~----- 238 (754)
T PRK15370 178 NNKTELRLKILGLTTI-----PACIP--EQITTLILDNNELKS-----LPENL--QGNIKTLYANSNQLTSIPAT----- 238 (754)
T ss_pred cCceEEEeCCCCcCcC-----Ccccc--cCCcEEEecCCCCCc-----CChhh--ccCCCEEECCCCccccCChh-----
Confidence 4567888888877753 32222 468888888888753 33333 25788888888887765431
Q ss_pred hcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHH
Q 006842 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405 (629)
Q Consensus 326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 405 (629)
+ .++|+.|+|++|.+.. ++..+. .+|+.|++++|+++. ++..+ .++|+.|++++|+++.
T Consensus 239 l--~~~L~~L~Ls~N~L~~-----LP~~l~---s~L~~L~Ls~N~L~~-----LP~~l--~~sL~~L~Ls~N~Lt~---- 297 (754)
T PRK15370 239 L--PDTIQEMELSINRITE-----LPERLP---SALQSLDLFHNKISC-----LPENL--PEELRYLSVYDNSIRT---- 297 (754)
T ss_pred h--hccccEEECcCCccCc-----CChhHh---CCCCEEECcCCccCc-----ccccc--CCCCcEEECCCCcccc----
Confidence 1 1367888888887765 222222 257888888888775 44333 2478888888887765
Q ss_pred HHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCH
Q 006842 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (629)
Q Consensus 406 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (629)
++..+. ++|+.|++++|.++.. +..+ .++|++|++++|.++.... .+ .++|+.|++++|+|+.
T Consensus 298 -LP~~lp--~sL~~L~Ls~N~Lt~L-----P~~l--~~sL~~L~Ls~N~Lt~LP~-----~l--~~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 298 -LPAHLP--SGITHLNVQSNSLTAL-----PETL--PPGLKTLEAGENALTSLPA-----SL--PPELQVLDVSKNQITV 360 (754)
T ss_pred -Ccccch--hhHHHHHhcCCccccC-----Cccc--cccceeccccCCccccCCh-----hh--cCcccEEECCCCCCCc
Confidence 332221 3677788888877652 2211 2567888888887764321 11 2577888888887764
Q ss_pred HHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhccccee
Q 006842 486 SGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSI 565 (629)
Q Consensus 486 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L 565 (629)
... .+ .++|++|+|++|++... |..+. ..|+.|++++|++++++.....+....+.+..|
T Consensus 361 LP~-~l------p~~L~~LdLs~N~Lt~L-----------P~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 361 LPE-TL------PPTITTLDVSRNALTNL-----------PENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred CCh-hh------cCCcCEEECCCCcCCCC-----------CHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEE
Confidence 321 11 15778888888877744 33332 357777777777765432111222222566777
Q ss_pred ecCCCCCCc
Q 006842 566 DLAFNEIRD 574 (629)
Q Consensus 566 dLs~N~i~~ 574 (629)
++.+|.|+.
T Consensus 421 ~L~~Npls~ 429 (754)
T PRK15370 421 IVEYNPFSE 429 (754)
T ss_pred EeeCCCccH
Confidence 777777764
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=2.7e-17 Score=193.30 Aligned_cols=340 Identities=16% Similarity=0.195 Sum_probs=178.4
Q ss_pred HHhcCCccEEEccCCCCCH--HHHHHHHHHhccC-CCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhH
Q 006842 158 AKELRAFSSVDMSGRNFGD--EGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG 234 (629)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~--~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 234 (629)
+..+++|+.|.+..+.+.. .....+++.+..+ .+|+.|.+.++.++... ..+ ...+|++|++++|.+..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP-----~~f-~~~~L~~L~L~~s~l~~-- 625 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP-----SNF-RPENLVKLQMQGSKLEK-- 625 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC-----CcC-CccCCcEEECcCccccc--
Confidence 4456666666665443211 0000122222222 34666666666543321 111 23567777777776653
Q ss_pred HHHHHHHHhhCCCCCEEEeeccC-CChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCC
Q 006842 235 VKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY 313 (629)
Q Consensus 235 ~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 313 (629)
+...+..+++|+.|+|+++. +.. ++. +..+++|++|+|++|... ..++..+..+++|+.|++++|.
T Consensus 626 ---L~~~~~~l~~Lk~L~Ls~~~~l~~-----ip~-ls~l~~Le~L~L~~c~~L----~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 626 ---LWDGVHSLTGLRNIDLRGSKNLKE-----IPD-LSMATNLETLKLSDCSSL----VELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred ---cccccccCCCCCEEECCCCCCcCc-----CCc-cccCCcccEEEecCCCCc----cccchhhhccCCCCEEeCCCCC
Confidence 23334456777777777653 322 221 344567777777776432 3455666667777777777763
Q ss_pred -CChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEE
Q 006842 314 -GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392 (629)
Q Consensus 314 -i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L 392 (629)
++.++. .+ ++++|++|++++|..... ++ ....+|+.|++++|.+.. ++..+ .+++|++|
T Consensus 693 ~L~~Lp~-----~i-~l~sL~~L~Lsgc~~L~~----~p----~~~~nL~~L~L~~n~i~~-----lP~~~-~l~~L~~L 752 (1153)
T PLN03210 693 NLEILPT-----GI-NLKSLYRLNLSGCSRLKS----FP----DISTNISWLDLDETAIEE-----FPSNL-RLENLDEL 752 (1153)
T ss_pred CcCccCC-----cC-CCCCCCEEeCCCCCCccc----cc----cccCCcCeeecCCCcccc-----ccccc-cccccccc
Confidence 433322 11 466777777777643211 21 122357777777777655 33322 45666666
Q ss_pred EccCCCCChH--HHHHH-HHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCC-CChhHHHHHHHHHh
Q 006842 393 NLYMNDIGDE--GAEKI-ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP-IGADGAKALSEVLK 468 (629)
Q Consensus 393 ~Ls~n~l~~~--~~~~l-~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~ 468 (629)
++.++..... ....+ +......++|+.|++++|..... ++..+.++++|+.|++++|. +... +...
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~----lP~si~~L~~L~~L~Ls~C~~L~~L-----P~~~- 822 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE----LPSSIQNLHKLEHLEIENCINLETL-----PTGI- 822 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccc----cChhhhCCCCCCEEECCCCCCcCee-----CCCC-
Confidence 6665321110 00000 01112235677777777754332 45556666777777777763 3221 1111
Q ss_pred cCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhh-hcchh
Q 006842 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCI-NYLQG 547 (629)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~-N~l~~ 547 (629)
.+++|+.|+|++|..-.. +... .++|++|+|++|.|... |..+..+++|+.|++++ |+++.
T Consensus 823 ~L~sL~~L~Ls~c~~L~~----~p~~---~~nL~~L~Ls~n~i~~i-----------P~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRT----FPDI---STNISDLNLSRTGIEEV-----------PWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred CccccCEEECCCCCcccc----cccc---ccccCEeECCCCCCccC-----------hHHHhcCCCCCEEECCCCCCcCc
Confidence 346777777777653211 1111 15677777777777644 66677777777777776 44444
Q ss_pred hHHHHHHHhhhhcccceeecCCC
Q 006842 548 AKCLAQSFKVVNEALTSIDLAFN 570 (629)
Q Consensus 548 ~~~l~~~~~~~~~~L~~LdLs~N 570 (629)
+ +.....+ +.|+.+++++|
T Consensus 885 l---~~~~~~L-~~L~~L~l~~C 903 (1153)
T PLN03210 885 V---SLNISKL-KHLETVDFSDC 903 (1153)
T ss_pred c---Ccccccc-cCCCeeecCCC
Confidence 2 2222222 66777777776
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=1.4e-18 Score=167.47 Aligned_cols=283 Identities=20% Similarity=0.183 Sum_probs=184.8
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccC-CCCChhHHHHHHH
Q 006842 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG-NSIGDEGIRALMS 352 (629)
Q Consensus 274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~ 352 (629)
+.-..++|..|+|+ ..-+.+|+.+++|++|||+.|.|+.+.. .+|.+++.+.+|-+.+ |+|++ +..
T Consensus 67 ~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is~I~p----~AF~GL~~l~~Lvlyg~NkI~~-----l~k 133 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNISFIAP----DAFKGLASLLSLVLYGNNKITD-----LPK 133 (498)
T ss_pred CcceEEEeccCCcc----cCChhhccchhhhceecccccchhhcCh----HhhhhhHhhhHHHhhcCCchhh-----hhh
Confidence 34566777777775 2224556667777777777777777665 4455666666665555 77776 344
Q ss_pred hhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHH-HHhcCCCccEEEeeCCC-CCHH
Q 006842 353 GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGGNN-IHSK 430 (629)
Q Consensus 353 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~-i~~~ 430 (629)
..+..+..|+.|.+.-|++.-. ..+.|..+++|..|.+.+|.+.. ++. .+..+..++.+.+..|. +.+-
T Consensus 134 ~~F~gL~slqrLllNan~i~Ci----r~~al~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCI----RQDALRDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcch----hHHHHHHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCcccccc
Confidence 4445555677777877777776 66777888888888888887655 333 45556778888877775 2222
Q ss_pred HHHHHHHH-------hhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHH-HHHHHHHHhcCCCcC
Q 006842 431 GASAIARV-------LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG-AEFVADMLRYNNTIS 502 (629)
Q Consensus 431 ~~~~l~~~-------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~ 502 (629)
....++.. ++......-..+.++++..+....+...++ .+..--.+.|.+.... ... ++..++|+
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e---sl~s~~~~~d~~d~~cP~~c----f~~L~~L~ 277 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE---SLPSRLSSEDFPDSICPAKC----FKKLPNLR 277 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH---hHHHhhccccCcCCcChHHH----Hhhcccce
Confidence 22222222 222233333445556665555555544321 2221122334333333 333 44459999
Q ss_pred EEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHH
Q 006842 503 ILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQ 582 (629)
Q Consensus 503 ~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~ 582 (629)
.|+|++|+|+++ ...+|.++..++.|.|..|+|..+ ....+.....|+.|+|.+|+|+...|.+|..
T Consensus 278 ~lnlsnN~i~~i----------~~~aFe~~a~l~eL~L~~N~l~~v---~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 278 KLNLSNNKITRI----------EDGAFEGAAELQELYLTRNKLEFV---SSGMFQGLSGLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred EeccCCCccchh----------hhhhhcchhhhhhhhcCcchHHHH---HHHhhhccccceeeeecCCeeEEEecccccc
Confidence 999999999988 788999999999999999998764 3333333488999999999999988888866
Q ss_pred HHhcCCccceeeeeccCCccch
Q 006842 583 ALKANEDVAVTSLNLANNFLTK 604 (629)
Q Consensus 583 ~l~~~~~~~L~~L~L~~N~i~~ 604 (629)
+ .+|..|+|-.|++.-
T Consensus 345 ~------~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 345 L------FSLSTLNLLSNPFNC 360 (498)
T ss_pred c------ceeeeeehccCcccC
Confidence 6 469999999998753
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=6.8e-17 Score=177.76 Aligned_cols=250 Identities=20% Similarity=0.206 Sum_probs=129.0
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHH
Q 006842 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (629)
Q Consensus 219 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 298 (629)
+.+.|+++++.++... ..+ .+.|+.|+|++|+|+.. +..+. ++|++|++++|.++. ++..+
T Consensus 179 ~~~~L~L~~~~LtsLP-----~~I--p~~L~~L~Ls~N~LtsL-----P~~l~--~nL~~L~Ls~N~Lts-----LP~~l 239 (754)
T PRK15370 179 NKTELRLKILGLTTIP-----ACI--PEQITTLILDNNELKSL-----PENLQ--GNIKTLYANSNQLTS-----IPATL 239 (754)
T ss_pred CceEEEeCCCCcCcCC-----ccc--ccCCcEEEecCCCCCcC-----Chhhc--cCCCEEECCCCcccc-----CChhh
Confidence 4566666666665432 111 14566667766666642 22221 356667776666642 22222
Q ss_pred hhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHH
Q 006842 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (629)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (629)
..+|+.|++++|.+..++.. + ..+|+.|++++|+++. ++..+. .+|+.|++++|+++.
T Consensus 240 --~~~L~~L~Ls~N~L~~LP~~-----l--~s~L~~L~Ls~N~L~~-----LP~~l~---~sL~~L~Ls~N~Lt~----- 297 (754)
T PRK15370 240 --PDTIQEMELSINRITELPER-----L--PSALQSLDLFHNKISC-----LPENLP---EELRYLSVYDNSIRT----- 297 (754)
T ss_pred --hccccEEECcCCccCcCChh-----H--hCCCCEEECcCCccCc-----cccccC---CCCcEEECCCCcccc-----
Confidence 13566667776666554421 1 1356666776666653 222221 256667776666664
Q ss_pred HHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChh
Q 006842 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (629)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (629)
++..+. ++|++|++++|.++. ++..+ .++|+.|++++|.++. ++..+ .++|+.|++++|+|+..
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~L~~L 361 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTS-----LPASL--PPELQVLDVSKNQITVL 361 (754)
T ss_pred Ccccch--hhHHHHHhcCCcccc-----CCccc--cccceeccccCCcccc-----CChhh--cCcccEEECCCCCCCcC
Confidence 222221 356666666666654 22222 2466666666666654 22222 25666677776666532
Q ss_pred HHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhh
Q 006842 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFY 538 (629)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L 538 (629)
.. .+ .++|++|+|++|.++..... +. ..|+.|++++|++... |. .++..+..++.+..|
T Consensus 362 P~-~l------p~~L~~LdLs~N~Lt~LP~~-l~------~sL~~LdLs~N~L~~L-P~------sl~~~~~~~~~l~~L 420 (754)
T PRK15370 362 PE-TL------PPTITTLDVSRNALTNLPEN-LP------AALQIMQASRNNLVRL-PE------SLPHFRGEGPQPTRI 420 (754)
T ss_pred Ch-hh------cCCcCEEECCCCcCCCCCHh-HH------HHHHHHhhccCCcccC-ch------hHHHHhhcCCCccEE
Confidence 11 11 14566677776666543222 11 2466666666666533 11 122223334556666
Q ss_pred hhhhhcch
Q 006842 539 SLCINYLQ 546 (629)
Q Consensus 539 ~Ls~N~l~ 546 (629)
++.+|.++
T Consensus 421 ~L~~Npls 428 (754)
T PRK15370 421 IVEYNPFS 428 (754)
T ss_pred EeeCCCcc
Confidence 66666665
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.64 E-value=2e-16 Score=186.05 Aligned_cols=124 Identities=12% Similarity=0.138 Sum_probs=63.7
Q ss_pred CcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCC-CCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCC
Q 006842 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNG 521 (629)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~ 521 (629)
++|+.|+|++|..... ++..+..+++|+.|+|++|. ++..+ ..+ .+++|+.|++++|..-..
T Consensus 778 ~sL~~L~Ls~n~~l~~----lP~si~~L~~L~~L~Ls~C~~L~~LP-~~~-----~L~sL~~L~Ls~c~~L~~------- 840 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVE----LPSSIQNLHKLEHLEIENCINLETLP-TGI-----NLESLESLDLSGCSRLRT------- 840 (1153)
T ss_pred ccchheeCCCCCCccc----cChhhhCCCCCCEEECCCCCCcCeeC-CCC-----CccccCEEECCCCCcccc-------
Confidence 4566666666543222 12223445666666666654 32211 111 235666666666533222
Q ss_pred chhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCC-CCCchhHHHHHHHHhcCCccceeeeeccCC
Q 006842 522 LSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFN-EIRDDGAFAIAQALKANEDVAVTSLNLANN 600 (629)
Q Consensus 522 l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N 600 (629)
+|. ..++|+.|+|++|.++.+ |..+... ++|+.|+|++| ++.. .+..+..+ .+|+.+++++|
T Consensus 841 ---~p~---~~~nL~~L~Ls~n~i~~i---P~si~~l-~~L~~L~L~~C~~L~~-l~~~~~~L------~~L~~L~l~~C 903 (1153)
T PLN03210 841 ---FPD---ISTNISDLNLSRTGIEEV---PWWIEKF-SNLSFLDMNGCNNLQR-VSLNISKL------KHLETVDFSDC 903 (1153)
T ss_pred ---ccc---cccccCEeECCCCCCccC---hHHHhcC-CCCCEEECCCCCCcCc-cCcccccc------cCCCeeecCCC
Confidence 111 124677777777777653 3333333 67777777774 5555 33333332 35777777776
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.57 E-value=5.9e-15 Score=143.91 Aligned_cols=319 Identities=20% Similarity=0.210 Sum_probs=215.7
Q ss_pred HHHHhc-CCccEEEccCC-CCCHHHHHHHHHHhccCCCccEEEeccCC-CCHHHHHHHHHHhhcCCCcCEEEccCC-CCC
Q 006842 156 EFAKEL-RAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGN-PIG 231 (629)
Q Consensus 156 ~~~~~~-~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~ 231 (629)
.+++.+ ..|++|.++|+ .+.+..+.. ....|++++.|++.+|. |++.....+.. .|+.|++|+|..| .|+
T Consensus 131 ~~~~Rcgg~lk~LSlrG~r~v~~sslrt---~~~~CpnIehL~l~gc~~iTd~s~~sla~---~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 131 NMISRCGGFLKELSLRGCRAVGDSSLRT---FASNCPNIEHLALYGCKKITDSSLLSLAR---YCRKLRHLNLHSCSSIT 204 (483)
T ss_pred hHhhhhccccccccccccccCCcchhhH---HhhhCCchhhhhhhcceeccHHHHHHHHH---hcchhhhhhhcccchhH
Confidence 344444 45888888888 455555443 34568888888888887 77776666654 6777888988884 677
Q ss_pred hhHHHHHHHHHhhCCCCCEEEeeccC-CChHHHHHHHHHHhcCCCccEEEeccC-CCChhhHHHHHHHHhhcCCccEEec
Q 006842 232 DEGVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNN-MIDYSGFTSLAEALLENSTIRSLHL 309 (629)
Q Consensus 232 ~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~L 309 (629)
+..++.+++. |++|++|+++.|. |++.+.+.+. ..+..++.+.+.++ .+.. +.+...-..+.-+.++++
T Consensus 205 ~~~Lk~la~g---C~kL~~lNlSwc~qi~~~gv~~~~---rG~~~l~~~~~kGC~e~~l---e~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 205 DVSLKYLAEG---CRKLKYLNLSWCPQISGNGVQALQ---RGCKELEKLSLKGCLELEL---EALLKAAAYCLEILKLNL 275 (483)
T ss_pred HHHHHHHHHh---hhhHHHhhhccCchhhcCcchHHh---ccchhhhhhhhcccccccH---HHHHHHhccChHhhccch
Confidence 7766655555 6888889888874 5554444443 34455777766665 3333 333333345666777777
Q ss_pred cCCC-CChhhHHHHHHHhcCCCCccEEEccCC-CCChhHHHHHHHhhccCCCCceEEEccCCC-CCchhHHHHHHHHHcC
Q 006842 310 NGNY-GGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNC 386 (629)
Q Consensus 310 ~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~ 386 (629)
..|. +++.+...+. ..+..|+.|+.+++ .+++..+.++. ..+.+|+.|-++.|+ +++.|+..+. .++
T Consensus 276 ~~c~~lTD~~~~~i~---~~c~~lq~l~~s~~t~~~d~~l~aLg----~~~~~L~~l~l~~c~~fsd~~ft~l~---rn~ 345 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIA---CGCHALQVLCYSSCTDITDEVLWALG----QHCHNLQVLELSGCQQFSDRGFTMLG---RNC 345 (483)
T ss_pred hhhccccchHHHHHh---hhhhHhhhhcccCCCCCchHHHHHHh----cCCCceEEEeccccchhhhhhhhhhh---cCC
Confidence 6664 6666654433 35678888888876 66666555554 566789999998875 7777776665 677
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCC-CCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHH
Q 006842 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (629)
Q Consensus 387 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (629)
+.|+.+++..+.....+ .+...-.+++.|+.+.+++| .|++.+...+...-.....|..+.|++++...+. .-+
T Consensus 346 ~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~---~Le 420 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA---TLE 420 (483)
T ss_pred hhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH---HHH
Confidence 88999999888554433 24444446888999999988 5777777777776666788889999988765432 233
Q ss_pred HHhcCCCccEEeccCCC-CCHHHHHHHHHHHhcCCCcCEEEcc
Q 006842 466 VLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLR 507 (629)
Q Consensus 466 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls 507 (629)
.+..|++|+.+++-+|+ ++..+...+..- +|++++.-+-
T Consensus 421 ~l~~c~~Leri~l~~~q~vtk~~i~~~~~~---lp~i~v~a~~ 460 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQDVTKEAISRFATH---LPNIKVHAYF 460 (483)
T ss_pred HHhhCcccceeeeechhhhhhhhhHHHHhh---Cccceehhhc
Confidence 44667899999998888 666666666544 4777766443
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.53 E-value=4.2e-14 Score=138.02 Aligned_cols=276 Identities=20% Similarity=0.213 Sum_probs=110.8
Q ss_pred HHHHHHHHhcCCccEEEccCC-CCCHHHHHHHHHHhccCCCccEEEeccCC-CCHHHHHHHHHHhhcCCCcCEEEccCC-
Q 006842 152 QTLNEFAKELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGN- 228 (629)
Q Consensus 152 ~~l~~~~~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n- 228 (629)
..+..+...++++++|++.+| .+++.....+++ +|++|+.|+|..|. ||+..++.+.+ .|++|++|+++++
T Consensus 154 sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~---~C~~l~~l~L~~c~~iT~~~Lk~la~---gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLALYGCKKITDSSLLSLAR---YCRKLRHLNLHSCSSITDVSLKYLAE---GCRKLKYLNLSWCP 227 (483)
T ss_pred chhhHHhhhCCchhhhhhhcceeccHHHHHHHHH---hcchhhhhhhcccchhHHHHHHHHHH---hhhhHHHhhhccCc
Confidence 344444444555555555554 344444333332 24455555555433 44443333322 3344555555544
Q ss_pred CCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccC-CCChhhHHHHHHHHhhcCCccEE
Q 006842 229 PIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN-MIDYSGFTSLAEALLENSTIRSL 307 (629)
Q Consensus 229 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L 307 (629)
.|++.+++.+... +..++.+.+.+| .+.+...+...-..+..+.++++..+ .++|+++..+. ..+..|+.|
T Consensus 228 qi~~~gv~~~~rG---~~~l~~~~~kGC--~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~---~~c~~lq~l 299 (483)
T KOG4341|consen 228 QISGNGVQALQRG---CKELEKLSLKGC--LELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA---CGCHALQVL 299 (483)
T ss_pred hhhcCcchHHhcc---chhhhhhhhccc--ccccHHHHHHHhccChHhhccchhhhccccchHHHHHh---hhhhHhhhh
Confidence 2333333333222 233444444433 12222223332223333444443333 34443322222 123444455
Q ss_pred eccCCC-CChhhHHHHHHHhcCCCCccEEEccCC-CCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHc
Q 006842 308 HLNGNY-GGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385 (629)
Q Consensus 308 ~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 385 (629)
+.+++. +++.....+ -.++.+|+.|.++.+ ++++.++..+. .+++.|+.+++..+.....+ .+...-.+
T Consensus 300 ~~s~~t~~~d~~l~aL---g~~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e~~~~~~d~--tL~sls~~ 370 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWAL---GQHCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLEECGLITDG--TLASLSRN 370 (483)
T ss_pred cccCCCCCchHHHHHH---hcCCCceEEEeccccchhhhhhhhhhh----cCChhhhhhcccccceehhh--hHhhhccC
Confidence 444442 222222221 223445555555544 34444433333 23334555555544433322 12222234
Q ss_pred CCCccEEEccCC-CCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCC
Q 006842 386 CKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453 (629)
Q Consensus 386 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 453 (629)
|+.|+.|.++++ .++|+|+..+...-.....|+.+.++++....+. .-+.+..|++|+.+++..+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~---~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA---TLEHLSICRNLERIELIDC 436 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH---HHHHHhhCcccceeeeech
Confidence 445555555544 3444444444443333444455555555333221 1222333445555444443
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.3e-13 Score=125.29 Aligned_cols=241 Identities=14% Similarity=0.159 Sum_probs=153.3
Q ss_pred ccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHh
Q 006842 192 AEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK 271 (629)
Q Consensus 192 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 271 (629)
=+.+|+.+-.|.......+. + .....+.+....+.+..+......+ -..|++|||++..|+. ..+...++
T Consensus 138 W~~lDl~~r~i~p~~l~~l~---~--rgV~v~Rlar~~~~~prlae~~~~f--rsRlq~lDLS~s~it~---stl~~iLs 207 (419)
T KOG2120|consen 138 WQTLDLTGRNIHPDVLGRLL---S--RGVIVFRLARSFMDQPRLAEHFSPF--RSRLQHLDLSNSVITV---STLHGILS 207 (419)
T ss_pred eeeeccCCCccChhHHHHHH---h--CCeEEEEcchhhhcCchhhhhhhhh--hhhhHHhhcchhheeH---HHHHHHHH
Confidence 35667776666655444442 2 3355555554444433221111111 2457888888877765 34556677
Q ss_pred cCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCC-CChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHH
Q 006842 272 NNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350 (629)
Q Consensus 272 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 350 (629)
.|.+|+.|.|.++++.| .++..+.+..+|+.|+++.|. ++..+.. -.+.+|+.|.+|+|++|.+..+.+..+
T Consensus 208 ~C~kLk~lSlEg~~LdD----~I~~~iAkN~~L~~lnlsm~sG~t~n~~~---ll~~scs~L~~LNlsWc~l~~~~Vtv~ 280 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDD----PIVNTIAKNSNLVRLNLSMCSGFTENALQ---LLLSSCSRLDELNLSWCFLFTEKVTVA 280 (419)
T ss_pred HHHhhhhccccccccCc----HHHHHHhccccceeeccccccccchhHHH---HHHHhhhhHhhcCchHhhccchhhhHH
Confidence 77888888888888874 445556677888888888874 6655544 345678889999999998877666666
Q ss_pred HHhhccCCCCceEEEccCCC--CCchhHHHHHHHHHcCCCccEEEccCC-CCChHHHHHHHHHHhcCCCccEEEeeCCCC
Q 006842 351 MSGLSSRKGKLAVLDIGNNS--ISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (629)
Q Consensus 351 ~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 427 (629)
...+. ++|+.|+|+++. +... ++......|++|.+|||++| .+++. ....|.+.+.|++|.++.|..
T Consensus 281 V~his---e~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~l~~~----~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 281 VAHIS---ETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLSDSVMLKND----CFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred Hhhhc---hhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeeccccccccCch----HHHHHHhcchheeeehhhhcC
Confidence 55444 478889998863 2222 35555678999999999887 66665 445566678899999998853
Q ss_pred -CHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHH
Q 006842 428 -HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (629)
Q Consensus 428 -~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (629)
...... .+...|.|.+||+.++ +.+..++.+-
T Consensus 351 i~p~~~~----~l~s~psl~yLdv~g~-vsdt~mel~~ 383 (419)
T KOG2120|consen 351 IIPETLL----ELNSKPSLVYLDVFGC-VSDTTMELLK 383 (419)
T ss_pred CChHHee----eeccCcceEEEEeccc-cCchHHHHHH
Confidence 322211 2344588888888775 3444444443
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=9.3e-13 Score=123.06 Aligned_cols=196 Identities=15% Similarity=0.224 Sum_probs=112.0
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCC-CCCHHHHHHHHHH
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARV 438 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~ 438 (629)
.|++|||++..|+... +-..++.|.+|+.|.+.++++.|. +...+.++.+|+.|+++.| .++..++.. .
T Consensus 186 Rlq~lDLS~s~it~st---l~~iLs~C~kLk~lSlEg~~LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~~l---l 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVST---LHGILSQCSKLKNLSLEGLRLDDP----IVNTIAKNSNLVRLNLSMCSGFTENALQL---L 255 (419)
T ss_pred hhHHhhcchhheeHHH---HHHHHHHHHhhhhccccccccCcH----HHHHHhccccceeeccccccccchhHHHH---H
Confidence 4666666666665542 333456667777777777777766 5555666677777777766 455554333 3
Q ss_pred hhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccC-CCCccccc
Q 006842 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEVCS 517 (629)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~l~~~~~~ 517 (629)
+.+|+.|.+|+|+++.+..+.+..+...+. ++|+.|+|+++.= ..+...+..+.+.|++|.+|||++| .+++.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rr-nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~--- 329 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRR-NLQKSHLSTLVRRCPNLVHLDLSDSVMLKND--- 329 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHh-hhhhhHHHHHHHhCCceeeeccccccccCch---
Confidence 445677777777777665544444333322 5677777777651 1122345555566777777777776 33333
Q ss_pred cCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHH--hhhhcccceeecCCCCCCchhHHHHHHH
Q 006842 518 GCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSF--KVVNEALTSIDLAFNEIRDDGAFAIAQA 583 (629)
Q Consensus 518 ~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~--~~~~~~L~~LdLs~N~i~~~~~~~l~~~ 583 (629)
....|..++.|++|.++.+. ++. |..+ .+..++|.+||+-++- .|...+.+.+.
T Consensus 330 -------~~~~~~kf~~L~~lSlsRCY--~i~--p~~~~~l~s~psl~yLdv~g~v-sdt~mel~~e~ 385 (419)
T KOG2120|consen 330 -------CFQEFFKFNYLQHLSLSRCY--DII--PETLLELNSKPSLVYLDVFGCV-SDTTMELLKEM 385 (419)
T ss_pred -------HHHHHHhcchheeeehhhhc--CCC--hHHeeeeccCcceEEEEecccc-CchHHHHHHHh
Confidence 44556666666666666665 332 2222 2223677777776653 23234444333
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.7e-14 Score=140.10 Aligned_cols=182 Identities=17% Similarity=0.113 Sum_probs=102.3
Q ss_pred cccchhhHHHHHHHHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEE
Q 006842 144 GKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223 (629)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L 223 (629)
..+.-..++.+..--+++.+|+++.|.++.+...+.+ .....|++++.|||++|-++. +..+.....++++|+.|
T Consensus 103 K~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~L 177 (505)
T KOG3207|consen 103 KQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENL 177 (505)
T ss_pred ceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhc
Confidence 3455555666666666677777777777776665433 344556777777777776643 44555666667777777
Q ss_pred EccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCC-CChhhHHHHHHHHhhcC
Q 006842 224 NLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENS 302 (629)
Q Consensus 224 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~ 302 (629)
+|+.|.+....-..... ..++|+.|.|+.|+++... +...+..+|+|+.|+|..|. +.. . ......++
T Consensus 178 Nls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~---V~~~~~~fPsl~~L~L~~N~~~~~---~--~~~~~i~~ 246 (505)
T KOG3207|consen 178 NLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKD---VQWILLTFPSLEVLYLEANEIILI---K--ATSTKILQ 246 (505)
T ss_pred ccccccccCCccccchh---hhhhhheEEeccCCCCHHH---HHHHHHhCCcHHHhhhhcccccce---e--cchhhhhh
Confidence 77777653211111111 1366777777777776433 33334455677777777763 211 1 11112245
Q ss_pred CccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCCh
Q 006842 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGD 344 (629)
Q Consensus 303 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 344 (629)
.|++|+|++|.+-+.+.. .....++.|+.|+++.+.+.+
T Consensus 247 ~L~~LdLs~N~li~~~~~---~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQG---YKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred HHhhccccCCcccccccc---cccccccchhhhhccccCcch
Confidence 666666666665443321 223455666666666665544
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5.8e-14 Score=137.79 Aligned_cols=242 Identities=19% Similarity=0.152 Sum_probs=170.7
Q ss_pred EEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCC
Q 006842 167 VDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNA 246 (629)
Q Consensus 167 L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 246 (629)
+.+++-++...|+..++.-=++..+|+++.|.++.+...+.. +..+.|++++.||||+|-+... ..++....+++
T Consensus 98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw--~~v~~i~eqLp 172 (505)
T KOG3207|consen 98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNW--FPVLKIAEQLP 172 (505)
T ss_pred hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhH--HHHHHHHHhcc
Confidence 345555666667777776666678999999999998877665 4556789999999999987643 45677777889
Q ss_pred CCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCC-CChhhHHHHHHH
Q 006842 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGANALAKG 325 (629)
Q Consensus 247 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~ 325 (629)
+|+.|+|+.|.+.......... .+++|+.|.|+.|.++..++..+. ..+++|+.|++.+|. +... . ..
T Consensus 173 ~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~~---~~fPsl~~L~L~~N~~~~~~---~--~~ 241 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDVQWIL---LTFPSLEVLYLEANEIILIK---A--TS 241 (505)
T ss_pred cchhcccccccccCCccccchh---hhhhhheEEeccCCCCHHHHHHHH---HhCCcHHHhhhhccccccee---c--ch
Confidence 9999999999876422111212 346799999999999975555444 467999999999994 2211 1 11
Q ss_pred hcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHH--HHHHHcCCCccEEEccCCCCChHH
Q 006842 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV--AEYIKNCKSLLWINLYMNDIGDEG 403 (629)
Q Consensus 326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l--~~~l~~~~~L~~L~Ls~n~l~~~~ 403 (629)
..-+..|++|||++|.+-+....... ..++.|+.|+++.|.+.+...... .......++|++|+++.|+|.+-.
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~----~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKV----GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred hhhhhHHhhccccCCccccccccccc----ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 22356799999999988664322221 356689999999998887522111 111356789999999999996631
Q ss_pred HHHHHHHHhcCCCccEEEeeCCCCCHHH
Q 006842 404 AEKIADALKQNRTITTIDLGGNNIHSKG 431 (629)
Q Consensus 404 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 431 (629)
....+..+++|++|.+..|.++.+.
T Consensus 318 ---sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 318 ---SLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred ---ccchhhccchhhhhhcccccccccc
Confidence 2234555788999999999887643
No 33
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=3.3e-14 Score=122.01 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=95.2
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHh
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (629)
+++.|.|++|+++. ++..+..+.+|+.|++.+|+|.+ ++..++.+++|++|+++-|++.. ++..+
T Consensus 34 ~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~~-----lprgf 98 (264)
T KOG0617|consen 34 NITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLNI-----LPRGF 98 (264)
T ss_pred hhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhhh-----cChhhhhchhhhheecchhhhhc-----Ccccc
Confidence 45555566666655 44555556666666666666655 55556666666666666665543 45556
Q ss_pred hcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccC
Q 006842 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGC 519 (629)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~ 519 (629)
+.+|.|+.|||.+|.+.+... ...+-....|+.|+|++|.+.-. +..+..+ ++|+.|.+..|.+-..
T Consensus 99 gs~p~levldltynnl~e~~l---pgnff~m~tlralyl~dndfe~l-p~dvg~l----t~lqil~lrdndll~l----- 165 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSL---PGNFFYMTTLRALYLGDNDFEIL-PPDVGKL----TNLQILSLRDNDLLSL----- 165 (264)
T ss_pred CCCchhhhhhccccccccccC---CcchhHHHHHHHHHhcCCCcccC-Chhhhhh----cceeEEeeccCchhhC-----
Confidence 666666777776666654321 11111224566777777776332 2223333 8888888888877644
Q ss_pred CCchhhhHHHHhhhhhhhhhhhhhcchhh
Q 006842 520 NGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (629)
Q Consensus 520 ~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 548 (629)
|..++.++.|+.|.+.+|+++-.
T Consensus 166 ------pkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 166 ------PKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred ------cHHHHHHHHHHHHhcccceeeec
Confidence 78888888888888888887764
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=5.3e-14 Score=120.81 Aligned_cols=194 Identities=13% Similarity=0.135 Sum_probs=137.1
Q ss_pred HcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHH
Q 006842 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (629)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (629)
..+.+++.|.+++|+++. ++..+..+.+|+.|++++|+|++ ++..+..+++|+.|+++-|++. .+
T Consensus 30 f~~s~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~-----~l 94 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLN-----IL 94 (264)
T ss_pred cchhhhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhhh-----cChhhhhchhhhheecchhhhh-----cC
Confidence 345678888999999887 55566777899999999999887 6667777899999999988764 24
Q ss_pred HHHHhcCCCccEEeccCCCCCHHH-HHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhh
Q 006842 464 SEVLKFHGNINTLKLGWCQIGASG-AEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCI 542 (629)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~ 542 (629)
...++.++.|+.|+|.+|++.... +..|..+ +.|+.|+|++|.+.- +|..++++++|+.|.+..
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m----~tlralyl~dndfe~-----------lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYM----TTLRALYLGDNDFEI-----------LPPDVGKLTNLQILSLRD 159 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHH----HHHHHHHhcCCCccc-----------CChhhhhhcceeEEeecc
Confidence 455566688888888888876532 3344444 778888888887763 478888888888888888
Q ss_pred hcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHHHHHHH
Q 006842 543 NYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKD 615 (629)
Q Consensus 543 N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~ 615 (629)
|.+-. +|..+..+ ..|++|.+.+|+++- .|..++..-.. .+-+.+.+.+|++-....+.|.-...
T Consensus 160 ndll~---lpkeig~l-t~lrelhiqgnrl~v-lppel~~l~l~---~~k~v~r~E~NPwv~pIaeQf~lG~s 224 (264)
T KOG0617|consen 160 NDLLS---LPKEIGDL-TRLRELHIQGNRLTV-LPPELANLDLV---GNKQVMRMEENPWVNPIAEQFLLGIS 224 (264)
T ss_pred Cchhh---CcHHHHHH-HHHHHHhcccceeee-cChhhhhhhhh---hhHHHHhhhhCCCCChHHHHHHhhHH
Confidence 86554 55555544 778888888888887 44444443110 12355667777766666666544433
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=2.6e-11 Score=113.51 Aligned_cols=133 Identities=26% Similarity=0.191 Sum_probs=88.7
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHH
Q 006842 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (629)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (629)
..+.|++|||++|.|+. +.+.++-.+.++.|++++|.|...+- +..+++|+.||||+|.++...
T Consensus 282 TWq~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v~n------La~L~~L~~LDLS~N~Ls~~~----- 345 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTVQN------LAELPQLQLLDLSGNLLAECV----- 345 (490)
T ss_pred hHhhhhhccccccchhh-----hhhhhhhccceeEEeccccceeeehh------hhhcccceEeecccchhHhhh-----
Confidence 34568888888888776 55666667888888888888876432 444588888888888775431
Q ss_pred HHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhc
Q 006842 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINY 544 (629)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~ 544 (629)
..-..+.++++|.|++|.|.+. . .+...-+|..||+++|+|... .-...+++++-|+.+.|-+|.
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~L--S----GL~KLYSLvnLDl~~N~Ie~l---------deV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIETL--S----GLRKLYSLVNLDLSSNQIEEL---------DEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhhh--h----hhHhhhhheeccccccchhhH---------HHhcccccccHHHHHhhcCCC
Confidence 1112346788888888887543 1 223336788888888887654 223456666777777777776
Q ss_pred chhh
Q 006842 545 LQGA 548 (629)
Q Consensus 545 l~~~ 548 (629)
+.+.
T Consensus 411 l~~~ 414 (490)
T KOG1259|consen 411 LAGS 414 (490)
T ss_pred cccc
Confidence 6553
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1e-10 Score=105.44 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=4.8
Q ss_pred CCcCEEEcccCCCCc
Q 006842 499 NTISILDLRANGLRD 513 (629)
Q Consensus 499 ~~L~~L~Ls~N~l~~ 513 (629)
++|++|++++|+|.+
T Consensus 88 p~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 88 PNLQELYLSNNKISD 102 (175)
T ss_dssp TT--EEE-TTS---S
T ss_pred CcCCEEECcCCcCCC
Confidence 555555555555544
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=6.8e-11 Score=106.57 Aligned_cols=83 Identities=28% Similarity=0.347 Sum_probs=21.4
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHH-hcCCCccEEEeeCCCCCHHHHHHHHHH
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL-KQNRTITTIDLGGNNIHSKGASAIARV 438 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 438 (629)
+|+.|++++|.|+.. +.+..++.|++|++++|.|++. ...+ ..+++|++|++++|+|.+... + ..
T Consensus 43 ~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i-----~~~l~~~lp~L~~L~L~~N~I~~l~~--l-~~ 108 (175)
T PF14580_consen 43 KLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSI-----SEGLDKNLPNLQELYLSNNKISDLNE--L-EP 108 (175)
T ss_dssp T--EEE-TTS--S--------TT----TT--EEE--SS---S------CHHHHHH-TT--EEE-TTS---SCCC--C-GG
T ss_pred CCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCcc-----ccchHHhCCcCCEEECcCCcCCChHH--h-HH
Confidence 455555555555442 2234445555555555555442 1111 123455555555554433110 1 12
Q ss_pred hhcCCcccEEECcCCCCC
Q 006842 439 LKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~ 456 (629)
++.+++|++|+|.+|++.
T Consensus 109 L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp GGG-TT--EEE-TT-GGG
T ss_pred HHcCCCcceeeccCCccc
Confidence 333455555555555543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=9.5e-11 Score=109.82 Aligned_cols=58 Identities=28% Similarity=0.350 Sum_probs=25.4
Q ss_pred ceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCH
Q 006842 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (629)
Q Consensus 361 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 429 (629)
|+.+||++|.|+. +.+.++-.|.++.|++++|.|... +.+..+++|++|||++|.++.
T Consensus 286 LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~N~Ls~ 343 (490)
T KOG1259|consen 286 LTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTV------QNLAELPQLQLLDLSGNLLAE 343 (490)
T ss_pred hhhccccccchhh-----hhhhhhhccceeEEeccccceeee------hhhhhcccceEeecccchhHh
Confidence 4444444444444 333344444444444444444432 123334444444444444443
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=8.9e-10 Score=115.84 Aligned_cols=175 Identities=23% Similarity=0.278 Sum_probs=86.0
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCC-CccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHH
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 438 (629)
.++.|++.+|.+++ ++....... +|++|++++|.+.. ++..+..+++|+.|++++|++++. +..
T Consensus 117 ~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~i~~-----l~~~~~~l~~L~~L~l~~N~l~~l-----~~~ 181 (394)
T COG4886 117 NLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNKIES-----LPSPLRNLPNLKNLDLSFNDLSDL-----PKL 181 (394)
T ss_pred ceeEEecCCccccc-----Cccccccchhhcccccccccchhh-----hhhhhhccccccccccCCchhhhh-----hhh
Confidence 46666666666665 333333342 66666666666655 333455566666666666666652 222
Q ss_pred hhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCC-CCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccc
Q 006842 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRANGLRDEVCS 517 (629)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~ 517 (629)
....+.|+.|++++|++.+..... .....|++|.+++|. +... ..+....++..+.+.+|++...
T Consensus 182 ~~~~~~L~~L~ls~N~i~~l~~~~-----~~~~~L~~l~~~~N~~~~~~------~~~~~~~~l~~l~l~~n~~~~~--- 247 (394)
T COG4886 182 LSNLSNLNNLDLSGNKISDLPPEI-----ELLSALEELDLSNNSIIELL------SSLSNLKNLSGLELSNNKLEDL--- 247 (394)
T ss_pred hhhhhhhhheeccCCccccCchhh-----hhhhhhhhhhhcCCcceecc------hhhhhcccccccccCCceeeec---
Confidence 223355666666666665443321 111235555555553 2111 1112225555555566555432
Q ss_pred cCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchh
Q 006842 518 GCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDG 576 (629)
Q Consensus 518 ~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~ 576 (629)
+..+..++.+++|++++|.++.+.. +.. ..+++.||+++|.+....
T Consensus 248 --------~~~~~~l~~l~~L~~s~n~i~~i~~----~~~-~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 248 --------PESIGNLSNLETLDLSNNQISSISS----LGS-LTNLRELDLSGNSLSNAL 293 (394)
T ss_pred --------cchhccccccceecccccccccccc----ccc-cCccCEEeccCccccccc
Confidence 3344455555555555555554332 111 144555555555555433
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=3.1e-09 Score=111.79 Aligned_cols=176 Identities=28% Similarity=0.349 Sum_probs=97.7
Q ss_pred CCCCEEEeeccCCChHHHHHHHHHHhcCC-CccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHH
Q 006842 246 AGVERLQLSSVDLRDEGAKAIAELLKNNS-ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (629)
Q Consensus 246 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 324 (629)
+.++.|++.+|.+++ ++....... +|+.|++++|.+ ..++..+..+++|+.|++++|++++.+..
T Consensus 116 ~~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~i-----~~l~~~~~~l~~L~~L~l~~N~l~~l~~~---- 181 (394)
T COG4886 116 TNLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNKI-----ESLPSPLRNLPNLKNLDLSFNDLSDLPKL---- 181 (394)
T ss_pred cceeEEecCCccccc-----Cccccccchhhcccccccccch-----hhhhhhhhccccccccccCCchhhhhhhh----
Confidence 445555555555554 222222222 566666666666 33334455566666666666666554431
Q ss_pred HhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHH
Q 006842 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (629)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (629)
....+.|+.|++++|++.+..... .....|++|.+++|.+.. ....+..+.++..+.+.+|++.+
T Consensus 182 -~~~~~~L~~L~ls~N~i~~l~~~~------~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~--- 246 (394)
T COG4886 182 -LSNLSNLNNLDLSGNKISDLPPEI------ELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLED--- 246 (394)
T ss_pred -hhhhhhhhheeccCCccccCchhh------hhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeee---
Confidence 114456666666666665522110 011236677777774332 23445666677777777776655
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChh
Q 006842 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (629)
Q Consensus 405 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (629)
+...+..++.++.|++++|.+++... +....++++|++++|.+...
T Consensus 247 --~~~~~~~l~~l~~L~~s~n~i~~i~~------~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 247 --LPESIGNLSNLETLDLSNNQISSISS------LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred --ccchhccccccceecccccccccccc------ccccCccCEEeccCcccccc
Confidence 23455556667777777777776422 44457777777777766543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=3.4e-10 Score=119.20 Aligned_cols=220 Identities=23% Similarity=0.222 Sum_probs=111.7
Q ss_pred CCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHH
Q 006842 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (629)
Q Consensus 246 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (629)
..++.++..++.+...... . ..+..++.+++..|.|.. +...+..+++|+.|++.+|.|..+.. .
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~----~~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i~~-----~ 113 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-V----ESLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKIEN-----L 113 (414)
T ss_pred chhhhhcchhccccchhhh-H----HHhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhccc-----c
Confidence 4555666665554433222 1 223456666677776642 22334456777777777777655432 1
Q ss_pred hcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHH
Q 006842 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405 (629)
Q Consensus 326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 405 (629)
+..+++|++|++++|.|++. ..+ ..++.|+.|++++|.|+.. ..+..++.|+.+++++|.+......
T Consensus 114 l~~~~~L~~L~ls~N~I~~i--~~l-----~~l~~L~~L~l~~N~i~~~------~~~~~l~~L~~l~l~~n~i~~ie~~ 180 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL--EGL-----STLTLLKELNLSGNLISDI------SGLESLKSLKLLDLSYNRIVDIEND 180 (414)
T ss_pred hhhhhcchheeccccccccc--cch-----hhccchhhheeccCcchhc------cCCccchhhhcccCCcchhhhhhhh
Confidence 44566777777777776652 111 1223466777777766663 2234456666667776666653110
Q ss_pred HHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCC--CccEEeccCCCC
Q 006842 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG--NINTLKLGWCQI 483 (629)
Q Consensus 406 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~--~L~~L~L~~n~i 483 (629)
. +..+.+++.+++.+|.+...... ..+..+..+++..|.+...... .... .|+.+++.+|.+
T Consensus 181 ---~-~~~~~~l~~l~l~~n~i~~i~~~------~~~~~l~~~~l~~n~i~~~~~l------~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 181 ---E-LSELISLEELDLGGNSIREIEGL------DLLKKLVLLSLLDNKISKLEGL------NELVMLHLRELYLSGNRI 244 (414)
T ss_pred ---h-hhhccchHHHhccCCchhcccch------HHHHHHHHhhcccccceeccCc------ccchhHHHHHHhcccCcc
Confidence 0 34456666666666665543211 1112333345555555422110 0011 255666666665
Q ss_pred CHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 484 GASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
.... ..+..+.++..|++.+|++...
T Consensus 245 ~~~~-----~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 245 SRSP-----EGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred cccc-----ccccccccccccchhhcccccc
Confidence 4432 1222235566666666665544
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=4.1e-10 Score=118.63 Aligned_cols=239 Identities=25% Similarity=0.233 Sum_probs=151.9
Q ss_pred CCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHH
Q 006842 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (629)
Q Consensus 218 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 297 (629)
+.++.++...+.+...... . ..+..++.+++..|.|.. +...+..+++|+.|++.+|.|. .+...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~----~~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~-----~i~~~ 113 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-V----ESLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIE-----KIENL 113 (414)
T ss_pred chhhhhcchhccccchhhh-H----HHhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchh-----hcccc
Confidence 4567777777655443222 1 334667777788777765 2233455678888888888884 33333
Q ss_pred HhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHH
Q 006842 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377 (629)
Q Consensus 298 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 377 (629)
+..+.+|+.|++++|.|+.+. .+..++.|+.|++++|.|.+.. .+ ..+..|+.+++++|.+...
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~------~l~~l~~L~~L~l~~N~i~~~~--~~-----~~l~~L~~l~l~~n~i~~i--- 177 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE------GLSTLTLLKELNLSGNLISDIS--GL-----ESLKSLKLLDLSYNRIVDI--- 177 (414)
T ss_pred hhhhhcchheecccccccccc------chhhccchhhheeccCcchhcc--CC-----ccchhhhcccCCcchhhhh---
Confidence 556788888999998887764 3456677888888888887621 11 1245788888888888874
Q ss_pred HHHHH-HHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCC--cccEEECcCCC
Q 006842 378 HVAEY-IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS--VITSLDLAYNP 454 (629)
Q Consensus 378 ~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~--~L~~L~Ls~n~ 454 (629)
... ...+.+++.+++.+|.+... ..+.....+..+++..|.++.... +.... +|+.+++++|+
T Consensus 178 --e~~~~~~~~~l~~l~l~~n~i~~i------~~~~~~~~l~~~~l~~n~i~~~~~------l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 178 --ENDELSELISLEELDLGGNSIREI------EGLDLLKKLVLLSLLDNKISKLEG------LNELVMLHLRELYLSGNR 243 (414)
T ss_pred --hhhhhhhccchHHHhccCCchhcc------cchHHHHHHHHhhcccccceeccC------cccchhHHHHHHhcccCc
Confidence 221 46778888888888877654 223333455555788887765311 11112 37888888888
Q ss_pred CChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCC
Q 006842 455 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (629)
Q Consensus 455 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 512 (629)
+.... ..+..+..+..|++..|++..... +...+.+..+....|.+.
T Consensus 244 i~~~~-----~~~~~~~~l~~l~~~~n~~~~~~~------~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 244 ISRSP-----EGLENLKNLPVLDLSSNRISNLEG------LERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccccc-----ccccccccccccchhhcccccccc------ccccchHHHhccCcchhc
Confidence 87542 334455778888888888755322 112245566666666665
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.75 E-value=2.1e-09 Score=112.25 Aligned_cols=127 Identities=18% Similarity=0.193 Sum_probs=73.4
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHH
Q 006842 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (629)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (629)
.|...+.++|.+.. +..++.-++.|++|||++|++++.. .+..|++|++|||++|.+.....-....
T Consensus 165 ~L~~a~fsyN~L~~-----mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~~vp~l~~~g-- 231 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-----MDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLRHVPQLSMVG-- 231 (1096)
T ss_pred hHhhhhcchhhHHh-----HHHHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhccccccchhh--
Confidence 46666777776654 4455555677888888888887642 4555688888888888775432221111
Q ss_pred hcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcc
Q 006842 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYL 545 (629)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l 545 (629)
..|+.|+|.+|.++.. ..+.++ ++|+.||+++|-|.+. .--..+..+..|+.|+|.+|.+
T Consensus 232 ---c~L~~L~lrnN~l~tL--~gie~L----ksL~~LDlsyNll~~h---------seL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 232 ---CKLQLLNLRNNALTTL--RGIENL----KSLYGLDLSYNLLSEH---------SELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ---hhheeeeecccHHHhh--hhHHhh----hhhhccchhHhhhhcc---------hhhhHHHHHHHHHHHhhcCCcc
Confidence 2366666666665432 222222 6666666666665544 1122344455555555555554
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=7.2e-10 Score=112.77 Aligned_cols=176 Identities=18% Similarity=0.172 Sum_probs=121.0
Q ss_pred EEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcC
Q 006842 391 WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH 470 (629)
Q Consensus 391 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 470 (629)
..|++.|++.. ++..+..+..|+.+.+..|.|.. ++..+..+..|++|||+.|+++.... .++.+
T Consensus 79 ~aDlsrNR~~e-----lp~~~~~f~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS~lp~-~lC~l---- 143 (722)
T KOG0532|consen 79 FADLSRNRFSE-----LPEEACAFVSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLSHLPD-GLCDL---- 143 (722)
T ss_pred hhhcccccccc-----CchHHHHHHHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhhcCCh-hhhcC----
Confidence 44555555554 33333334456666666665554 34444555667777777777653322 12222
Q ss_pred CCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHH
Q 006842 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKC 550 (629)
Q Consensus 471 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 550 (629)
-|+.|.+++|+++.... .+.. ...|..||.+.|.+... |..+.++.+|+.|++..|++..
T Consensus 144 -pLkvli~sNNkl~~lp~-~ig~----~~tl~~ld~s~nei~sl-----------psql~~l~slr~l~vrRn~l~~--- 203 (722)
T KOG0532|consen 144 -PLKVLIVSNNKLTSLPE-EIGL----LPTLAHLDVSKNEIQSL-----------PSQLGYLTSLRDLNVRRNHLED--- 203 (722)
T ss_pred -cceeEEEecCccccCCc-cccc----chhHHHhhhhhhhhhhc-----------hHHhhhHHHHHHHHHhhhhhhh---
Confidence 47788888888765422 2222 27889999999988765 8889999999999999998876
Q ss_pred HHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHH
Q 006842 551 LAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 610 (629)
Q Consensus 551 l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l 610 (629)
++..+.. -.|..||+|+|+|.. +|..|.++ ..|++|-|.+|+++..+....
T Consensus 204 lp~El~~--LpLi~lDfScNkis~-iPv~fr~m------~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 204 LPEELCS--LPLIRLDFSCNKISY-LPVDFRKM------RHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred CCHHHhC--CceeeeecccCceee-cchhhhhh------hhheeeeeccCCCCCChHHHH
Confidence 4555543 459999999999998 88888887 579999999999997665544
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.71 E-value=5.6e-09 Score=109.13 Aligned_cols=185 Identities=19% Similarity=0.227 Sum_probs=115.8
Q ss_pred HHcCCCccEEEccCCCCChH-HHHHHHHHHhcCCCccEEEeeCCCCCHHHHHH-HHHHhhcC------CcccEEECcCCC
Q 006842 383 IKNCKSLLWINLYMNDIGDE-GAEKIADALKQNRTITTIDLGGNNIHSKGASA-IARVLKDN------SVITSLDLAYNP 454 (629)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~------~~L~~L~Ls~n~ 454 (629)
+....+|+.|.+.++.++.. |+..+- ..|++|...+ .++. ... |+...+.. ..|...+.++|.
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr------~qLe~LIC~~-Sl~A--l~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELR------HQLEKLICHN-SLDA--LRHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHH------Hhhhhhhhhc-cHHH--HHHHHHHhccccccchhhhhHhhhhcchhh
Confidence 35567899999999987652 222222 2445443222 1111 111 11111111 347778888887
Q ss_pred CChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhh
Q 006842 455 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKH 534 (629)
Q Consensus 455 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~ 534 (629)
+.. +-..++..+.|+.|+|++|+++... .++.|+.|++|||++|.+... ..-...++.
T Consensus 176 L~~-----mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~~v----------p~l~~~gc~- 233 (1096)
T KOG1859|consen 176 LVL-----MDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLRHV----------PQLSMVGCK- 233 (1096)
T ss_pred HHh-----HHHHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhccc----------cccchhhhh-
Confidence 752 3334445577899999999986642 345569999999999988766 222334444
Q ss_pred hhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHH
Q 006842 535 MLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQS 608 (629)
Q Consensus 535 L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~ 608 (629)
|+.|++.+|.++....+.. + .+|+.||+++|-|.+...-.....+. .|+.|+|.||++--....
T Consensus 234 L~~L~lrnN~l~tL~gie~----L-ksL~~LDlsyNll~~hseL~pLwsLs-----~L~~L~LeGNPl~c~p~h 297 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRGIEN----L-KSLYGLDLSYNLLSEHSELEPLWSLS-----SLIVLWLEGNPLCCAPWH 297 (1096)
T ss_pred heeeeecccHHHhhhhHHh----h-hhhhccchhHhhhhcchhhhHHHHHH-----HHHHHhhcCCccccCHHH
Confidence 8899999998886543332 2 78999999999887754444434443 688999999988754443
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.67 E-value=7.5e-10 Score=112.66 Aligned_cols=173 Identities=22% Similarity=0.277 Sum_probs=93.8
Q ss_pred cCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHh
Q 006842 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALL 299 (629)
Q Consensus 220 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 299 (629)
-...||+.|++...... .+. +..|+.+.|++|.+.. ++..+.++..|+.|||+.|++ ..++..++
T Consensus 77 t~~aDlsrNR~~elp~~-~~~----f~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~Nql-----S~lp~~lC 141 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEE-ACA----FVSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQL-----SHLPDGLC 141 (722)
T ss_pred hhhhhccccccccCchH-HHH----HHHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchh-----hcCChhhh
Confidence 34567777776654322 122 2456666677766653 455555666677777777776 44455444
Q ss_pred hcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHH
Q 006842 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (629)
Q Consensus 300 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (629)
.+ -|+.|-+++|+++..+. .++...+|..||.+.|.+.. +...+. .+.+|+.|++..|++.+ +
T Consensus 142 ~l-pLkvli~sNNkl~~lp~-----~ig~~~tl~~ld~s~nei~s-----lpsql~-~l~slr~l~vrRn~l~~-----l 204 (722)
T KOG0532|consen 142 DL-PLKVLIVSNNKLTSLPE-----EIGLLPTLAHLDVSKNEIQS-----LPSQLG-YLTSLRDLNVRRNHLED-----L 204 (722)
T ss_pred cC-cceeEEEecCccccCCc-----ccccchhHHHhhhhhhhhhh-----chHHhh-hHHHHHHHHHhhhhhhh-----C
Confidence 43 36666666666655442 23345566666666665543 111111 22345555555555555 3
Q ss_pred HHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHH
Q 006842 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430 (629)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 430 (629)
++.+. .-.|..||++.|++.. ++-.|.+++.|++|-|.+|.+...
T Consensus 205 p~El~-~LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 205 PEELC-SLPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred CHHHh-CCceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCCC
Confidence 44444 2335566666666555 455555556666666666655543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1.3e-07 Score=89.16 Aligned_cols=109 Identities=21% Similarity=0.302 Sum_probs=56.0
Q ss_pred ccEEEccCCCCCHHH-HHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHH
Q 006842 164 FSSVDMSGRNFGDEG-LFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (629)
Q Consensus 164 L~~L~Ls~~~l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 242 (629)
++-|-+.++.|..++ ...++. .++.++++||.+|.|++ +..+...+.++|.|+.|+|+.|++... +..++
T Consensus 47 ~ellvln~~~id~~gd~~~~~~---~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~-I~~lp--- 117 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGS---SVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSD-IKSLP--- 117 (418)
T ss_pred hhhheecCCCCCcchhHHHHHH---Hhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCc-cccCc---
Confidence 334455555554333 222221 24566666666666654 445555666666666666666665432 11111
Q ss_pred hhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccC
Q 006842 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN 284 (629)
Q Consensus 243 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 284 (629)
....+|+.|-|.+..+... .....+..+|.++.|+++.|
T Consensus 118 ~p~~nl~~lVLNgT~L~w~---~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWT---QSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccccceEEEEEcCCCCChh---hhhhhhhcchhhhhhhhccc
Confidence 1235666666666555433 23333444555666666655
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.3e-07 Score=89.12 Aligned_cols=111 Identities=25% Similarity=0.275 Sum_probs=67.7
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHH
Q 006842 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270 (629)
Q Consensus 191 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 270 (629)
.++-|.+.++.|..++..... -..++.++++||.+|.|++. ..++..+++++.|+.|+|++|++... ++.++
T Consensus 46 a~ellvln~~~id~~gd~~~~--~~~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~-I~~lp--- 117 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLF--GSSVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSD-IKSLP--- 117 (418)
T ss_pred chhhheecCCCCCcchhHHHH--HHHhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCc-cccCc---
Confidence 445566666666655433222 23456688888888888764 35666777778888888888877653 22222
Q ss_pred hcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCC
Q 006842 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN 312 (629)
Q Consensus 271 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 312 (629)
....+|++|-|.+..+..... ...+..++.+++|+++.|
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~~---~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQS---TSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccccceEEEEEcCCCCChhhh---hhhhhcchhhhhhhhccc
Confidence 122567777777777664332 333445666777777666
No 49
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.49 E-value=4.3e-07 Score=98.33 Aligned_cols=234 Identities=26% Similarity=0.304 Sum_probs=103.2
Q ss_pred CCCccEEEeccCC-CCHHHHHHHHHHhhcCCCcCEEEccCC--CCChhHHHHHHHHHhhCCCCCEEEeeccC-CChHHHH
Q 006842 189 NQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGN--PIGDEGVKCLCDILVDNAGVERLQLSSVD-LRDEGAK 264 (629)
Q Consensus 189 ~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~ 264 (629)
++.|+.|.+..+. +++.+ +......++.|++|+++++ .+...+.. .......+.+|+.|+++++. +++.+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLL-LLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhH-hhhhhhhcCCcCccchhhhhccCchhHH
Confidence 4555555555553 44333 2222234455555555541 11111111 11122334555555555555 5555444
Q ss_pred HHHHHHhcCCCccEEEeccCC-CChhhHHHHHHHHhhcCCccEEeccCCC-CChhhHHHHHHHhcCCCCccEEEccCCC-
Q 006842 265 AIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGNS- 341 (629)
Q Consensus 265 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 341 (629)
.++.. |++|++|.+.++. +++.++..+.. .++.|++|++++|. +++.+...+ ..++++++.|.+....
T Consensus 263 ~l~~~---c~~L~~L~l~~c~~lt~~gl~~i~~---~~~~L~~L~l~~c~~~~d~~l~~~---~~~c~~l~~l~~~~~~~ 333 (482)
T KOG1947|consen 263 ALASR---CPNLETLSLSNCSNLTDEGLVSIAE---RCPSLRELDLSGCHGLTDSGLEAL---LKNCPNLRELKLLSLNG 333 (482)
T ss_pred HHHhh---CCCcceEccCCCCccchhHHHHHHH---hcCcccEEeeecCccchHHHHHHH---HHhCcchhhhhhhhcCC
Confidence 44332 4555555555554 55544444433 34555555555554 222222222 2234444444332221
Q ss_pred ---CChhHHH--------HHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHH
Q 006842 342 ---IGDEGIR--------ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410 (629)
Q Consensus 342 ---l~~~~~~--------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 410 (629)
+++..+. .+.......+++++.+.+..+.+++.+. ...+.+|+.|+ .+ +...
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~l~gc~~l~-----------~~---l~~~ 396 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL---ELSLRGCPNLT-----------ES---LELR 396 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch---HHHhcCCcccc-----------hH---HHHH
Confidence 2222211 1122222344556666666655444332 12233444441 11 1111
Q ss_pred HhcCCCccEEEeeCCC-CCHHHHHHHHHHhhcCCcccEEECcCCCC
Q 006842 411 LKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYNPI 455 (629)
Q Consensus 411 l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 455 (629)
......++.|+++.+. .+.......... +..++.+++.+...
T Consensus 397 ~~~~~~l~~L~l~~~~~~t~~~l~~~~~~---~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 397 LCRSDSLRVLNLSDCRLVTDKGLRCLADS---CSNLKDLDLSGCRV 439 (482)
T ss_pred hccCCccceEecccCccccccchHHHhhh---hhccccCCccCccc
Confidence 1122337888888885 444443333332 57788888887754
No 50
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.43 E-value=1.5e-06 Score=94.19 Aligned_cols=256 Identities=23% Similarity=0.300 Sum_probs=156.6
Q ss_pred CCccEEEeccC--CCCHHHHHHHHHHhhcCCCcCEEEccCC-CCChhHHHHHHHHHhhCCCCCEEEeecc-C-CChHHHH
Q 006842 190 QTAEEVSFAAN--GITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGVKCLCDILVDNAGVERLQLSSV-D-LRDEGAK 264 (629)
Q Consensus 190 ~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~-l~~~~~~ 264 (629)
..++.+.+..+ .+.......+ ...++.|+.|.+.++ .+++.+ +......+++|+.|+++++ . ++..+ .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~-~ 233 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRL---LSSCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSP-L 233 (482)
T ss_pred HHHheeeeecccccccHHHHHHH---HhhCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccch-h
Confidence 34455555443 3444433333 334788999999987 666655 4455556899999999973 2 22222 2
Q ss_pred HHHHHHhcCCCccEEEeccCC-CChhhHHHHHHHHhhcCCccEEeccCCC-CChhhHHHHHHHhcCCCCccEEEccCC-C
Q 006842 265 AIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGN-S 341 (629)
Q Consensus 265 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~ 341 (629)
........+++|+.|+++.+. +++.++..+... +++|+.|.+.+|. +++.+...+. ..++.|++|+++++ .
T Consensus 234 ~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~---c~~L~~L~l~~c~~lt~~gl~~i~---~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 234 LLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR---CPNLETLSLSNCSNLTDEGLVSIA---ERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhhhhhhcCCcCccchhhhhccCchhHHHHHhh---CCCcceEccCCCCccchhHHHHHH---HhcCcccEEeeecCcc
Confidence 222355567899999999997 998888777754 8999999998887 7887776554 47889999999998 4
Q ss_pred CChhHHHHHHHhhccCCCCceEEEccCCC----CCchhHHH---------HHHHHHcCCCccEEEccCCCCChHHHHHHH
Q 006842 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNS----ISAKGAFH---------VAEYIKNCKSLLWINLYMNDIGDEGAEKIA 408 (629)
Q Consensus 342 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~----l~~~~~~~---------l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 408 (629)
+++.++..+. ..+++++.|.+.... ++..++.. ....+..+++++.+.+..+.+.+.+.
T Consensus 308 ~~d~~l~~~~----~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 379 (482)
T KOG1947|consen 308 LTDSGLEALL----KNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL---- 379 (482)
T ss_pred chHHHHHHHH----HhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch----
Confidence 5566666554 245566666554432 33322211 11123445555555555554433321
Q ss_pred HHHhcCCCccEEEeeCCC-CCHHHHHHHHHHhhcCCcccEEECcCCC-CChhHHHHHHHHHhcCCCccEEeccCCCC
Q 006842 409 DALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYNP-IGADGAKALSEVLKFHGNINTLKLGWCQI 483 (629)
Q Consensus 409 ~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 483 (629)
.+.+.+|. ++ .. +......+..++.|+++.+. .++......... +.+++.+++.++..
T Consensus 380 ----------~~~l~gc~~l~-~~---l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~---~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 380 ----------ELSLRGCPNLT-ES---LELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS---CSNLKDLDLSGCRV 439 (482)
T ss_pred ----------HHHhcCCcccc-hH---HHHHhccCCccceEecccCccccccchHHHhhh---hhccccCCccCccc
Confidence 23333332 22 22 22222223448999999886 444444444332 56788999999884
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.41 E-value=2.8e-06 Score=93.64 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=50.8
Q ss_pred CCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHH
Q 006842 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA 408 (629)
Q Consensus 329 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 408 (629)
+|+|+.|.+++-.+....+..++ .+.++|..||+++.++++. ..++++++|+.|.+.+=.+... ..+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc----~sFpNL~sLDIS~TnI~nl------~GIS~LknLq~L~mrnLe~e~~--~~l- 213 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLC----ASFPNLRSLDISGTNISNL------SGISRLKNLQVLSMRNLEFESY--QDL- 213 (699)
T ss_pred CcccceEEecCceecchhHHHHh----hccCccceeecCCCCccCc------HHHhccccHHHHhccCCCCCch--hhH-
Confidence 45555555555444443333333 2333455555555555542 3345555555555544433321 001
Q ss_pred HHHhcCCCccEEEeeCCCCCHHH--HHHHHHHhhcCCcccEEECcCCCCChh
Q 006842 409 DALKQNRTITTIDLGGNNIHSKG--ASAIARVLKDNSVITSLDLAYNPIGAD 458 (629)
Q Consensus 409 ~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (629)
..+..+++|+.||+|........ +....+.-..+|.|+.||.|++.+...
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 12233455555555544322221 222222223345555555555555444
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=1.5e-07 Score=103.92 Aligned_cols=107 Identities=18% Similarity=0.254 Sum_probs=55.1
Q ss_pred ccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHH
Q 006842 473 INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLA 552 (629)
Q Consensus 473 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~ 552 (629)
++.|+|++|.+....+..+.. +++|+.|+|++|.+.+. +|..+..+++|+.|+|++|+++|. ++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~----L~~L~~L~Ls~N~l~g~----------iP~~~~~l~~L~~LdLs~N~lsg~--iP 483 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK----LRHLQSINLSGNSIRGN----------IPPSLGSITSLEVLDLSYNSFNGS--IP 483 (623)
T ss_pred EEEEECCCCCccccCCHHHhC----CCCCCEEECCCCcccCc----------CChHHhCCCCCCEEECCCCCCCCC--Cc
Confidence 455555555554433333332 25566666666655555 445555556666666666655553 23
Q ss_pred HHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCc
Q 006842 553 QSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNF 601 (629)
Q Consensus 553 ~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~ 601 (629)
..+..+ ++|++|||++|++++..|..+.... .++..+++.+|.
T Consensus 484 ~~l~~L-~~L~~L~Ls~N~l~g~iP~~l~~~~-----~~~~~l~~~~N~ 526 (623)
T PLN03150 484 ESLGQL-TSLRILNLNGNSLSGRVPAALGGRL-----LHRASFNFTDNA 526 (623)
T ss_pred hHHhcC-CCCCEEECcCCcccccCChHHhhcc-----ccCceEEecCCc
Confidence 333322 5566666666666655555554321 134455555553
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.27 E-value=2.9e-06 Score=93.48 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=18.9
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccC
Q 006842 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAAN 200 (629)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 200 (629)
-+++.+++.+.......++.+.+ .. |++|.|.+.
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~----~~-L~sl~LGnl 93 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRK----QD-LESLKLGNL 93 (699)
T ss_pred heeEEeeccceecchhHHHHHhh----cc-ccccCCcch
Confidence 34667777766666554433322 23 677766554
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=1.6e-06 Score=95.82 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=37.9
Q ss_pred ceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhh
Q 006842 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK 440 (629)
Q Consensus 361 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 440 (629)
++.|+|++|.+... ++..+..+++|+.|+|++|.+... ++..+..+++|+.|+|++|+++.. ++..+.
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~----iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGS----IPESLG 487 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCC----CchHHh
Confidence 44445555444433 344444444555555555544433 333444444444444444444433 233333
Q ss_pred cCCcccEEECcCCCCC
Q 006842 441 DNSVITSLDLAYNPIG 456 (629)
Q Consensus 441 ~~~~L~~L~Ls~n~i~ 456 (629)
.+++|++|+|++|.++
T Consensus 488 ~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 488 QLTSLRILNLNGNSLS 503 (623)
T ss_pred cCCCCCEEECcCCccc
Confidence 3444444444444443
No 55
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.5e-07 Score=69.53 Aligned_cols=60 Identities=23% Similarity=0.280 Sum_probs=27.5
Q ss_pred CCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCC
Q 006842 499 NTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNE 571 (629)
Q Consensus 499 ~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~ 571 (629)
++|++|++++|++... .+..|.++++|++|++++|.++.+. +..|..+ ++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i----------~~~~f~~l~~L~~L~l~~N~l~~i~--~~~f~~l-~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI----------PPDSFSNLPNLETLDLSNNNLTSIP--PDAFSNL-PNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEE----------CTTTTTTGTTESEEEETSSSESEEE--TTTTTTS-TTESEEEETSSS
T ss_pred CcCcEEECCCCCCCcc----------CHHHHcCCCCCCEeEccCCccCccC--HHHHcCC-CCCCEEeCcCCc
Confidence 3556666666666554 3334444444444444444444321 1122222 445555555554
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=7.9e-08 Score=71.09 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=44.0
Q ss_pred CCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcc
Q 006842 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYL 545 (629)
Q Consensus 471 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l 545 (629)
++|++|++++|+|+......|..+ ++|++|++++|.+... .+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l----~~L~~L~l~~N~l~~i----------~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNL----PNLETLDLSNNNLTSI----------PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTG----TTESEEEETSSSESEE----------ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCC----CCCCEeEccCCccCcc----------CHHHHcCCCCCCEEeCcCCcC
Confidence 357777777777766655555544 7888888888887766 566777888888888887764
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=3.5e-06 Score=70.56 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=38.7
Q ss_pred CCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHH
Q 006842 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKC 550 (629)
Q Consensus 471 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 550 (629)
..|+..+|++|.+.+.....-... +.++.|+|++|+|.+. |..+..++.|+.|+++.|.+...
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf----~t~t~lNl~~neisdv-----------PeE~Aam~aLr~lNl~~N~l~~~-- 115 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKF----PTATTLNLANNEISDV-----------PEELAAMPALRSLNLRFNPLNAE-- 115 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhcc----chhhhhhcchhhhhhc-----------hHHHhhhHHhhhcccccCccccc--
Confidence 344555555555544333222222 4455555555555544 44455555555555555544432
Q ss_pred HHHHHhhhhcccceeecCCCCCCc
Q 006842 551 LAQSFKVVNEALTSIDLAFNEIRD 574 (629)
Q Consensus 551 l~~~~~~~~~~L~~LdLs~N~i~~ 574 (629)
+..+..+ .+|-+||..+|.+-.
T Consensus 116 -p~vi~~L-~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 116 -PRVIAPL-IKLDMLDSPENARAE 137 (177)
T ss_pred -hHHHHHH-HhHHHhcCCCCcccc
Confidence 2222221 444455555554444
No 58
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.94 E-value=4e-06 Score=94.91 Aligned_cols=149 Identities=22% Similarity=0.253 Sum_probs=82.1
Q ss_pred cCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccC--CChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHH
Q 006842 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVD--LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (629)
Q Consensus 220 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 297 (629)
.+...+-+|.+... +.. ..++.|++|-+..|. +... -...+..++.|+.|||++|.=. ..+|..
T Consensus 525 ~rr~s~~~~~~~~~-----~~~-~~~~~L~tLll~~n~~~l~~i----s~~ff~~m~~LrVLDLs~~~~l----~~LP~~ 590 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHI-----AGS-SENPKLRTLLLQRNSDWLLEI----SGEFFRSLPLLRVLDLSGNSSL----SKLPSS 590 (889)
T ss_pred eeEEEEeccchhhc-----cCC-CCCCccceEEEeecchhhhhc----CHHHHhhCcceEEEECCCCCcc----CcCChH
Confidence 55555555554321 111 124567777777764 2222 1223455677888888876321 556777
Q ss_pred HhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHH
Q 006842 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377 (629)
Q Consensus 298 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 377 (629)
++.+-+|++|+++++.+... |..+.+++.|.+|++..+.--... .++...+++|++|.+..........
T Consensus 591 I~~Li~LryL~L~~t~I~~L-----P~~l~~Lk~L~~Lnl~~~~~l~~~-----~~i~~~L~~Lr~L~l~~s~~~~~~~- 659 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGISHL-----PSGLGNLKKLIYLNLEVTGRLESI-----PGILLELQSLRVLRLPRSALSNDKL- 659 (889)
T ss_pred HhhhhhhhcccccCCCcccc-----chHHHHHHhhheeccccccccccc-----cchhhhcccccEEEeeccccccchh-
Confidence 77777888888888776544 356667777888888776432211 1122234567877776654222111
Q ss_pred HHHHHHHcCCCccEEEc
Q 006842 378 HVAEYIKNCKSLLWINL 394 (629)
Q Consensus 378 ~l~~~l~~~~~L~~L~L 394 (629)
....+..+.+|+.+..
T Consensus 660 -~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 660 -LLKELENLEHLENLSI 675 (889)
T ss_pred -hHHhhhcccchhhhee
Confidence 2233344555555544
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=6.5e-06 Score=68.98 Aligned_cols=139 Identities=19% Similarity=0.148 Sum_probs=89.0
Q ss_pred CCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHH
Q 006842 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 494 (629)
Q Consensus 415 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 494 (629)
..+-.++|+.|++... ......+.....|+..+|++|.+.+.... |. ...+.+++|+|++|.|.+...+ ++.+
T Consensus 27 kE~h~ldLssc~lm~i--~davy~l~~~~el~~i~ls~N~fk~fp~k-ft---~kf~t~t~lNl~~neisdvPeE-~Aam 99 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYI--ADAVYMLSKGYELTKISLSDNGFKKFPKK-FT---IKFPTATTLNLANNEISDVPEE-LAAM 99 (177)
T ss_pred HHhhhcccccchhhHH--HHHHHHHhCCceEEEEecccchhhhCCHH-Hh---hccchhhhhhcchhhhhhchHH-Hhhh
Confidence 3455677777766532 11333444556777788888877654332 22 2235788888888888777655 6666
Q ss_pred HhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCc
Q 006842 495 LRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRD 574 (629)
Q Consensus 495 l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~ 574 (629)
+.|+.|+++.|.+.-. |..+..+.++-.|+..+|.+..+..- .+.. ...-..++.++.+.+
T Consensus 100 ----~aLr~lNl~~N~l~~~-----------p~vi~~L~~l~~Lds~~na~~eid~d--l~~s--~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 100 ----PALRSLNLRFNPLNAE-----------PRVIAPLIKLDMLDSPENARAEIDVD--LFYS--SLPALIKLGNEPLGD 160 (177)
T ss_pred ----HHhhhcccccCccccc-----------hHHHHHHHhHHHhcCCCCccccCcHH--Hhcc--ccHHHHHhcCCcccc
Confidence 8899999999988765 77777788999999888877654321 2211 333344556667766
Q ss_pred hhHHH
Q 006842 575 DGAFA 579 (629)
Q Consensus 575 ~~~~~ 579 (629)
.-+..
T Consensus 161 ~~~~k 165 (177)
T KOG4579|consen 161 ETKKK 165 (177)
T ss_pred cCccc
Confidence 44433
No 60
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.80 E-value=3.1e-05 Score=87.77 Aligned_cols=128 Identities=27% Similarity=0.312 Sum_probs=71.7
Q ss_pred CccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCC--CChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHH
Q 006842 275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY--GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS 352 (629)
Q Consensus 275 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 352 (629)
..+...+-+|.+ ..++... .++.|++|-+.+|. +..... ..|..++.|+.|||++|.=... ++.
T Consensus 524 ~~rr~s~~~~~~-----~~~~~~~-~~~~L~tLll~~n~~~l~~is~----~ff~~m~~LrVLDLs~~~~l~~----LP~ 589 (889)
T KOG4658|consen 524 SVRRMSLMNNKI-----EHIAGSS-ENPKLRTLLLQRNSDWLLEISG----EFFRSLPLLRVLDLSGNSSLSK----LPS 589 (889)
T ss_pred heeEEEEeccch-----hhccCCC-CCCccceEEEeecchhhhhcCH----HHHhhCcceEEEECCCCCccCc----CCh
Confidence 355566655555 2222221 34567777777764 333332 2355677777777777632222 222
Q ss_pred hhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCC
Q 006842 353 GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426 (629)
Q Consensus 353 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 426 (629)
.+. .+-+|++|++++..+.. +|..+.+++.|.+|++..+.--.. ++.....+++|++|.+....
T Consensus 590 ~I~-~Li~LryL~L~~t~I~~-----LP~~l~~Lk~L~~Lnl~~~~~l~~----~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 590 SIG-ELVHLRYLDLSDTGISH-----LPSGLGNLKKLIYLNLEVTGRLES----IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHh-hhhhhhcccccCCCccc-----cchHHHHHHhhheecccccccccc----ccchhhhcccccEEEeeccc
Confidence 221 33357777777777775 677777777777777776643221 23344446777777776554
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=1.7e-05 Score=74.46 Aligned_cols=104 Identities=27% Similarity=0.235 Sum_probs=61.3
Q ss_pred CCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHH
Q 006842 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (629)
Q Consensus 218 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 297 (629)
.+.+.|+.-++.++|+. + ...++.|+.|.|+-|.|+.. ..+..|++|++|+|..|.|.+.+ -...
T Consensus 19 ~~vkKLNcwg~~L~DIs---i---c~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sld---EL~Y 83 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS---I---CEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESLD---ELEY 83 (388)
T ss_pred HHhhhhcccCCCccHHH---H---HHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccHH---HHHH
Confidence 34667777777776653 2 23357777777777777653 22445567777777777775421 1334
Q ss_pred HhhcCCccEEeccCCCC-ChhhHHHHHHHhcCCCCccEEE
Q 006842 298 LLENSTIRSLHLNGNYG-GALGANALAKGLEGNKSLRELH 336 (629)
Q Consensus 298 l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~ 336 (629)
+.++++|+.|.|..|.. ...+...=...+..+|+|+.||
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 55667777777776653 2223333344555666777665
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.53 E-value=8.6e-05 Score=50.20 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=18.3
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCCh
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (629)
+|++|++++|+|++ ++..+.++++|++|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 35555555555554 33335555555555555555544
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.43 E-value=0.00012 Score=49.43 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=15.9
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCC
Q 006842 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (629)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 428 (629)
+|++|++++|+|++ ++..+.++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence 34455555555444 3333444444555555544444
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=4.6e-05 Score=68.43 Aligned_cols=84 Identities=25% Similarity=0.307 Sum_probs=37.9
Q ss_pred CccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHH
Q 006842 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382 (629)
Q Consensus 303 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 382 (629)
+...+||++|.+...+ .|..++.|.+|.+++|.|+. +...+....++|..|.|.+|+|...|- ..-
T Consensus 43 ~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nNrIt~-----I~p~L~~~~p~l~~L~LtnNsi~~l~d---l~p 108 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNNRITR-----IDPDLDTFLPNLKTLILTNNSIQELGD---LDP 108 (233)
T ss_pred ccceecccccchhhcc------cCCCccccceEEecCCccee-----eccchhhhccccceEEecCcchhhhhh---cch
Confidence 3444555555443322 23445555555555555554 222222333445555555555444221 112
Q ss_pred HHcCCCccEEEccCCCCC
Q 006842 383 IKNCKSLLWINLYMNDIG 400 (629)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~ 400 (629)
+..|++|++|.+-+|.+.
T Consensus 109 La~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVE 126 (233)
T ss_pred hccCCccceeeecCCchh
Confidence 334445555555444443
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=7.3e-05 Score=67.16 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=54.7
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHh-cCCCccEEEeeCCCCCHHHHHHHHHH
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK-QNRTITTIDLGGNNIHSKGASAIARV 438 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~ 438 (629)
+...+||++|.+... ..|..++.|.+|.+++|.|+.. ...+. .+++|+.|.|.+|.|...+- + .-
T Consensus 43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I-----~p~L~~~~p~l~~L~LtnNsi~~l~d--l-~p 108 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRI-----DPDLDTFLPNLKTLILTNNSIQELGD--L-DP 108 (233)
T ss_pred ccceecccccchhhc------ccCCCccccceEEecCCcceee-----ccchhhhccccceEEecCcchhhhhh--c-ch
Confidence 455666666665553 3345566666666666666553 11111 13556666666666654221 1 12
Q ss_pred hhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCC
Q 006842 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (629)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (629)
+..||+|++|.+-+|++....-... -.+...++|++||+..-.
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~-yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRL-YVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hccCCccceeeecCCchhcccCcee-EEEEecCcceEeehhhhh
Confidence 4455666676666666643321110 011233566666655433
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.00011 Score=69.25 Aligned_cols=105 Identities=20% Similarity=0.161 Sum_probs=73.0
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHH
Q 006842 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (629)
Q Consensus 189 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 268 (629)
+.+.++|++-+|.|+|+. +...++.|+.|.||-|+|+.. .-+..|++|++|+|..|.|.+.+- + .
T Consensus 18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sldE--L-~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESLDE--L-E 82 (388)
T ss_pred HHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccHHH--H-H
Confidence 457788888888888763 334667789999998888753 334567888999999888876421 2 3
Q ss_pred HHhcCCCccEEEeccCCCChhh-HHHHHHHHhhcCCccEEe
Q 006842 269 LLKNNSILRVLELNNNMIDYSG-FTSLAEALLENSTIRSLH 308 (629)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~ 308 (629)
.++++++|+.|.|..|.-...+ -..=...+.-+++|++||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 4667788898988888654332 222234455678888876
No 67
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.00 E-value=0.0003 Score=71.11 Aligned_cols=317 Identities=16% Similarity=0.137 Sum_probs=168.7
Q ss_pred hcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHH
Q 006842 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (629)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (629)
..+.++++|++.|.+.+...-.|++. .--+.++.|++++..+..+.. -+.-..+++++|+.|...+.-.. ..
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p------~~pl~lr~c~lsskfis~l~~-qsg~~~lteldls~n~~Kddip~-~~ 234 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQP------GNPLSLRVCELSSKFISKLLI-QSGRLWLTELDLSTNGGKDDIPR-TL 234 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCC------CCccchhhhhhhhhHHHHhhh-hhccccccccccccCCCCccchh-HH
Confidence 34556777888777776643333322 122667777777665555541 11123577888888866544222 22
Q ss_pred HHHhhCCCCCEEEeeccCCChHH-HHHHHHHHhcCCCccEEEeccCCCChhhHHHHH----HHHhhcCCccEEeccCCCC
Q 006842 240 DILVDNAGVERLQLSSVDLRDEG-AKAIAELLKNNSILRVLELNNNMIDYSGFTSLA----EALLENSTIRSLHLNGNYG 314 (629)
Q Consensus 240 ~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~----~~l~~~~~L~~L~L~~n~i 314 (629)
.......-++.++.+...+.-+. ...+. .+.-+++...+++.|.....-..... +.+..-.++ +|++..+..
T Consensus 235 n~~a~~~vl~~ld~s~tgirlD~l~~~l~--~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~ 311 (553)
T KOG4242|consen 235 NKKAGTLVLFKLDRSTTGIRLDLLTSPLA--AGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYT 311 (553)
T ss_pred HHhhhhhhhhcccccccccchhhcccccc--cccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccC
Confidence 22222345677777776655321 11111 12334677777777655432222222 222223455 666666655
Q ss_pred ChhhHHHHHHHhcCCCCc--cEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEE
Q 006842 315 GALGANALAKGLEGNKSL--RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392 (629)
Q Consensus 315 ~~~~~~~l~~~l~~~~~L--~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L 392 (629)
.......+.-.+...... -.+|+..|...+..+ +-..+ .-..+++|.+..|++...|.... .+...+.++.+
T Consensus 312 psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~v--leaci--~g~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l 385 (553)
T KOG4242|consen 312 PSEKLKSMLLGLAENEATLGARLDLRRCPLERAEV--LEACI--FGQRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRIL 385 (553)
T ss_pred chhhhhhhhcccccccccccccCChhhccccccch--hhccc--cceeeeEeecccccccccccccc--ceeeccccccc
Confidence 443332222111111111 234555554443222 11111 11257888888887776644323 34556677777
Q ss_pred EccCCC---CChHHHHHHHHHHh--cCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHH
Q 006842 393 NLYMND---IGDEGAEKIADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (629)
Q Consensus 393 ~Ls~n~---l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (629)
++..-. +.+.+.....-... .-.-+..+.++.|.+.. +...+...+...+.+..|++++|..++.+...+...+
T Consensus 386 ~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkal 464 (553)
T KOG4242|consen 386 KAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKAL 464 (553)
T ss_pred cccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHHHHHHhhccCcccccccccCCCcccCCCCcCcccc
Confidence 765432 11111111111111 12356677788887765 3444555666668888888888888888777777777
Q ss_pred hcCCCccEEeccCCCCCHHHHHHHHHH
Q 006842 468 KFHGNINTLKLGWCQIGASGAEFVADM 494 (629)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~ 494 (629)
+.+..+..+..+.|..+..+...+...
T Consensus 465 q~n~rlr~ipds~n~p~~~gl~p~~~~ 491 (553)
T KOG4242|consen 465 QSNCRLRPIPDSLNLPEDPGLGPRNEE 491 (553)
T ss_pred CCCCccCCCCCCCCCccccccchhhhh
Confidence 777788888888888776655544443
No 68
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=96.94 E-value=0.00052 Score=69.39 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=19.6
Q ss_pred CCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCC
Q 006842 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (629)
Q Consensus 470 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 512 (629)
.+.+..|++++|..++.+...+...++.+..++.+..+.|..+
T Consensus 439 tqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred CcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 3444455555555444444444444444444444444444433
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.58 E-value=0.0011 Score=67.65 Aligned_cols=138 Identities=18% Similarity=0.236 Sum_probs=85.3
Q ss_pred HHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCC-CCHHHHHHHHHHhhcCCCcCEEEccCC-CCChhHH
Q 006842 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGV 235 (629)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~ 235 (629)
++.+.++++|++++|.++.. +. -..+|++|++++|. ++. +++.+. ++|++|++++| .+..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-----P~---LP~sLtsL~Lsnc~nLts-----LP~~LP--~nLe~L~Ls~Cs~L~s--- 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-----PV---LPNELTEITIENCNNLTT-----LPGSIP--EGLEKLTVCHCPEISG--- 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-----CC---CCCCCcEEEccCCCCccc-----CCchhh--hhhhheEccCcccccc---
Confidence 55679999999999987663 31 12579999999875 322 222221 46999999998 5532
Q ss_pred HHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCC-CChhhHHHHHHHHhhcCCccEEeccCCCC
Q 006842 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYG 314 (629)
Q Consensus 236 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 314 (629)
++ .+|+.|++.++..... ..++ ++|+.|.+.+++ ... ..++.. -.++|++|++++|..
T Consensus 110 --LP------~sLe~L~L~~n~~~~L--~~LP------ssLk~L~I~~~n~~~~---~~lp~~--LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 110 --LP------ESVRSLEIKGSATDSI--KNVP------NGLTSLSINSYNPENQ---ARIDNL--ISPSLKTLSLTGCSN 168 (426)
T ss_pred --cc------cccceEEeCCCCCccc--ccCc------chHhheeccccccccc---cccccc--cCCcccEEEecCCCc
Confidence 22 6789999987765432 2233 347788875432 110 001110 126899999998875
Q ss_pred ChhhHHHHHHHhcCCCCccEEEccCCC
Q 006842 315 GALGANALAKGLEGNKSLRELHLHGNS 341 (629)
Q Consensus 315 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 341 (629)
...+ ..+ ..+|+.|+++.+.
T Consensus 169 i~LP-----~~L--P~SLk~L~ls~n~ 188 (426)
T PRK15386 169 IILP-----EKL--PESLQSITLHIEQ 188 (426)
T ss_pred ccCc-----ccc--cccCcEEEecccc
Confidence 4322 111 2589999988763
No 70
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=96.51 E-value=0.0076 Score=58.70 Aligned_cols=118 Identities=27% Similarity=0.253 Sum_probs=85.2
Q ss_pred CCccEEEccCC-CCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHH
Q 006842 387 KSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (629)
Q Consensus 387 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (629)
+.+++.+++++ .|....+..+..++...+..+.+.+.+....+....+++.++..|+.|++|++.+|.|+..+...+..
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~ 277 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLR 277 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHH
Confidence 56777777766 56666677777777777778888888887777777777888888888888888888888888887777
Q ss_pred HHhcCCCccEEeccCCC--CCHHHHHHHHHHHhcCCCcCEE
Q 006842 466 VLKFHGNINTLKLGWCQ--IGASGAEFVADMLRYNNTISIL 504 (629)
Q Consensus 466 ~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L 504 (629)
.+....+|..+...+-. ++......++.++..+.+|-.+
T Consensus 278 al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~ 318 (353)
T KOG3735|consen 278 ALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKF 318 (353)
T ss_pred HHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhccccccc
Confidence 77777777777664332 4445555566666666665544
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.44 E-value=0.0011 Score=62.47 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=14.6
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCC
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (629)
.|+.|.+.+..++.. ..+..+++|++|.++.|
T Consensus 44 ~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL------TNFPKLPKLKKLELSDN 75 (260)
T ss_pred chhhhhhhccceeec------ccCCCcchhhhhcccCC
Confidence 344444444444442 12334445555555555
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.0034 Score=56.77 Aligned_cols=83 Identities=28% Similarity=0.390 Sum_probs=60.2
Q ss_pred CccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCC-CCHHHHHHHHHHhhcCCCcCEEEccCC-CCChhHHHHHHH
Q 006842 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGVKCLCD 240 (629)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 240 (629)
.++.+|-+++.|..++++.+ ..++.++.|.+.+|. +.+.+++.+.. -.++|+.|+|++| .|++.++.++..
T Consensus 102 ~IeaVDAsds~I~~eGle~L----~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL----RDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHH----hccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHH
Confidence 36778888888877775544 445888888888887 77777777765 2366888888877 688888777665
Q ss_pred HHhhCCCCCEEEeecc
Q 006842 241 ILVDNAGVERLQLSSV 256 (629)
Q Consensus 241 ~l~~~~~L~~L~L~~n 256 (629)
. ++|+.|.|.+-
T Consensus 175 l----knLr~L~l~~l 186 (221)
T KOG3864|consen 175 L----KNLRRLHLYDL 186 (221)
T ss_pred h----hhhHHHHhcCc
Confidence 5 77777777653
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.0056 Score=55.43 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=54.0
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCC-CCChHHHHHHHHHHhcCCCccEEEeeCC-CCCHHHHHHHHH
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIAR 437 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 437 (629)
.++.+|-+++.|..+|+..+ ..++.++.|.+.++ .+.|.+++.+.. -.++|+.|++++| .||+.+...+..
T Consensus 102 ~IeaVDAsds~I~~eGle~L----~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL----RDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHH----hccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHH
Confidence 46777777777777765433 56677777777777 566666665554 2467777777777 677766655544
Q ss_pred HhhcCCcccEEECcC
Q 006842 438 VLKDNSVITSLDLAY 452 (629)
Q Consensus 438 ~l~~~~~L~~L~Ls~ 452 (629)
. ++|+.|.|.+
T Consensus 175 l----knLr~L~l~~ 185 (221)
T KOG3864|consen 175 L----KNLRRLHLYD 185 (221)
T ss_pred h----hhhHHHHhcC
Confidence 4 6777776655
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.21 E-value=0.0043 Score=63.52 Aligned_cols=78 Identities=10% Similarity=0.281 Sum_probs=52.9
Q ss_pred HHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCC-CCChhHHHHHHHHHhcCCCccEEeccCC-CCCHH
Q 006842 409 DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWC-QIGAS 486 (629)
Q Consensus 409 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~ 486 (629)
.-+..+.++++|++++|.|+. ++.. -++|++|+++++ .+... +..+ ..+|++|++++| .+..
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~s-----LP~L---P~sLtsL~Lsnc~nLtsL-P~~L------P~nLe~L~Ls~Cs~L~s- 109 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIES-----LPVL---PNELTEITIENCNNLTTL-PGSI------PEGLEKLTVCHCPEISG- 109 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcc-----cCCC---CCCCcEEEccCCCCcccC-Cchh------hhhhhheEccCcccccc-
Confidence 345567899999999998877 3322 246999999875 33221 1112 257999999998 4532
Q ss_pred HHHHHHHHHhcCCCcCEEEcccCCCC
Q 006842 487 GAEFVADMLRYNNTISILDLRANGLR 512 (629)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~Ls~N~l~ 512 (629)
+ -++|+.|+++++...
T Consensus 110 ----L------P~sLe~L~L~~n~~~ 125 (426)
T PRK15386 110 ----L------PESVRSLEIKGSATD 125 (426)
T ss_pred ----c------ccccceEEeCCCCCc
Confidence 1 167999999877654
No 75
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.16 E-value=0.0023 Score=60.28 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=47.7
Q ss_pred CCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChh-HHHHHHHHHhcCCCccEEeccCCCCCH-HHHHHHH
Q 006842 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD-GAKALSEVLKFHGNINTLKLGWCQIGA-SGAEFVA 492 (629)
Q Consensus 415 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~ 492 (629)
..|+.|++.+..++.. . .+..+++|++|+++.|..... ++..+ ...+++|++|++++|+|.. .....+.
T Consensus 43 ~~le~ls~~n~gltt~-----~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl---~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-----T-NFPKLPKLKKLELSDNYRRVSGGLEVL---AEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cchhhhhhhccceeec-----c-cCCCcchhhhhcccCCcccccccceeh---hhhCCceeEEeecCCccccccccchhh
Confidence 4555566666655542 1 234457888888888843221 22222 2334777777777777754 1122222
Q ss_pred HHHhcCCCcCEEEcccCCCCc
Q 006842 493 DMLRYNNTISILDLRANGLRD 513 (629)
Q Consensus 493 ~~l~~~~~L~~L~Ls~N~l~~ 513 (629)
. .++|..||+.+|..+.
T Consensus 114 ~----l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 114 E----LENLKSLDLFNCSVTN 130 (260)
T ss_pred h----hcchhhhhcccCCccc
Confidence 2 2667777777765543
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.62 E-value=0.02 Score=34.35 Aligned_cols=23 Identities=43% Similarity=0.836 Sum_probs=12.0
Q ss_pred CcCEEEccCCCCChhHHHHHHHH
Q 006842 219 ALKTLNLSGNPIGDEGVKCLCDI 241 (629)
Q Consensus 219 ~L~~L~Ls~n~i~~~~~~~l~~~ 241 (629)
+|++|||++|.|++.+...+++.
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHHH
Confidence 35555555555555555555444
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.36 E-value=0.029 Score=33.60 Aligned_cols=24 Identities=42% Similarity=0.729 Sum_probs=13.0
Q ss_pred CcccEEECcCCCCChhHHHHHHHH
Q 006842 443 SVITSLDLAYNPIGADGAKALSEV 466 (629)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~ 466 (629)
++|++|||++|.|++.|...+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 345555555555555555555544
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.13 E-value=0.012 Score=33.86 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=11.1
Q ss_pred ceeeeeccCCccchhHHHHHH
Q 006842 591 AVTSLNLANNFLTKFGQSALT 611 (629)
Q Consensus 591 ~L~~L~L~~N~i~~~~~~~l~ 611 (629)
+|++|+|++|+|++.+...++
T Consensus 3 ~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 3 NLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp T-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCEEEccCCcCCHHHHHHhC
Confidence 456666666666666555554
No 79
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=95.10 E-value=0.053 Score=53.00 Aligned_cols=94 Identities=22% Similarity=0.244 Sum_probs=58.8
Q ss_pred hcCCccEEEccCC-CCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHH
Q 006842 160 ELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (629)
Q Consensus 160 ~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 238 (629)
.-+.++.+++.++ .|....+..+.+++...+..+...+.+.+..+-...+++..+..+..|++|++.+|.|+..++..+
T Consensus 196 nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~ 275 (353)
T KOG3735|consen 196 NDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMAL 275 (353)
T ss_pred CCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHH
Confidence 4466666666666 455566666666666666666666666666665556666666666666666666666666666666
Q ss_pred HHHHhhCCCCCEEEe
Q 006842 239 CDILVDNAGVERLQL 253 (629)
Q Consensus 239 ~~~l~~~~~L~~L~L 253 (629)
..++....+|..+..
T Consensus 276 ~~al~~n~tl~el~~ 290 (353)
T KOG3735|consen 276 LRALQSNKSLTELKN 290 (353)
T ss_pred HHHHhccchhhHhhh
Confidence 666555555555543
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.90 E-value=0.018 Score=33.04 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=7.0
Q ss_pred cccEEECcCCCCChhHHHH
Q 006842 444 VITSLDLAYNPIGADGAKA 462 (629)
Q Consensus 444 ~L~~L~Ls~n~i~~~~~~~ 462 (629)
+|++|+|++|+|++.++..
T Consensus 3 ~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 3 NLETLDLSNNQITDEGASA 21 (24)
T ss_dssp T-SEEE-TSSBEHHHHHHH
T ss_pred CCCEEEccCCcCCHHHHHH
Confidence 3444444444444444333
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.02 E-value=0.04 Score=47.36 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=5.5
Q ss_pred hcCCCCccEEEccC
Q 006842 326 LEGNKSLRELHLHG 339 (629)
Q Consensus 326 l~~~~~L~~L~Ls~ 339 (629)
|.++++|+.+++..
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 33444455555444
No 82
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.15 E-value=0.023 Score=31.85 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=7.6
Q ss_pred eeeeeccCCccchh
Q 006842 592 VTSLNLANNFLTKF 605 (629)
Q Consensus 592 L~~L~L~~N~i~~~ 605 (629)
|++|||++|+|+.+
T Consensus 2 L~~Ldls~n~l~~i 15 (22)
T PF00560_consen 2 LEYLDLSGNNLTSI 15 (22)
T ss_dssp ESEEEETSSEESEE
T ss_pred ccEEECCCCcCEeC
Confidence 55555555555533
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.43 E-value=0.11 Score=28.98 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=10.1
Q ss_pred CcCEEEcccCCCC
Q 006842 500 TISILDLRANGLR 512 (629)
Q Consensus 500 ~L~~L~Ls~N~l~ 512 (629)
+|++|||++|+|+
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4778888888777
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.32 E-value=0.22 Score=29.11 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=7.8
Q ss_pred CccEEEeccCC-CCHHHHHH
Q 006842 191 TAEEVSFAANG-ITAAGIKA 209 (629)
Q Consensus 191 ~L~~L~Ls~n~-i~~~~~~~ 209 (629)
+|++|+|++|. |+|.++..
T Consensus 3 ~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 3 NLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCEeCCCCCCCcCHHHHHH
Confidence 34444444443 44444333
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.88 E-value=0.27 Score=28.76 Aligned_cols=24 Identities=42% Similarity=0.563 Sum_probs=20.5
Q ss_pred cCCccEEEccCC-CCCHHHHHHHHH
Q 006842 161 LRAFSSVDMSGR-NFGDEGLFFLAE 184 (629)
Q Consensus 161 ~~~L~~L~Ls~~-~l~~~~~~~l~~ 184 (629)
+++|++|+|++| .++|.++..++.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 578999999999 699999887763
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.11 E-value=0.18 Score=26.12 Aligned_cols=12 Identities=50% Similarity=0.703 Sum_probs=4.4
Q ss_pred eeeeeccCCccc
Q 006842 592 VTSLNLANNFLT 603 (629)
Q Consensus 592 L~~L~L~~N~i~ 603 (629)
|+.|+|++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.89 E-value=0.042 Score=47.21 Aligned_cols=45 Identities=22% Similarity=0.425 Sum_probs=17.7
Q ss_pred cccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHHHHH
Q 006842 560 EALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 613 (629)
Q Consensus 560 ~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~ 613 (629)
++|+.+++..+ +.......+... .|+.+.+.+ .++.++...|.+.
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-------~l~~i~~~~-~~~~i~~~~F~~~ 125 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-------NLKEINIPS-NITKIEENAFKNC 125 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--------T--EEE-TT-B-SS----GGG--
T ss_pred ccccccccCcc-ccEEchhhhcCC-------CceEEEECC-CccEECCcccccc
Confidence 66777777654 444333333322 466777665 4555555555444
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.45 E-value=0.086 Score=48.94 Aligned_cols=83 Identities=13% Similarity=0.070 Sum_probs=52.4
Q ss_pred CCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHH
Q 006842 499 NTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 578 (629)
Q Consensus 499 ~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~ 578 (629)
...+.||++.|++... ...|..++.|..|+++.|.+.- ++..+... ..++.+++..|..+. .|.
T Consensus 42 kr~tvld~~s~r~vn~-----------~~n~s~~t~~~rl~~sknq~~~---~~~d~~q~-~e~~~~~~~~n~~~~-~p~ 105 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNL-----------GKNFSILTRLVRLDLSKNQIKF---LPKDAKQQ-RETVNAASHKNNHSQ-QPK 105 (326)
T ss_pred ceeeeehhhhhHHHhh-----------ccchHHHHHHHHHhccHhhHhh---ChhhHHHH-HHHHHHHhhccchhh-CCc
Confidence 6667777777766543 4556777777777777776544 34444433 556677777777665 455
Q ss_pred HHHHHHhcCCccceeeeeccCCccc
Q 006842 579 AIAQALKANEDVAVTSLNLANNFLT 603 (629)
Q Consensus 579 ~l~~~l~~~~~~~L~~L~L~~N~i~ 603 (629)
.+.+. +.++++++-+|.++
T Consensus 106 s~~k~------~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 106 SQKKE------PHPKKNEQKKTEFF 124 (326)
T ss_pred ccccc------CCcchhhhccCcch
Confidence 55444 45777777777655
No 89
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.79 E-value=0.49 Score=27.55 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=11.6
Q ss_pred ceeeeeccCCccchhHHHHH
Q 006842 591 AVTSLNLANNFLTKFGQSAL 610 (629)
Q Consensus 591 ~L~~L~L~~N~i~~~~~~~l 610 (629)
+|++|+|++|.|+.++...|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 45666666666666555544
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.79 E-value=0.49 Score=27.55 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=11.6
Q ss_pred ceeeeeccCCccchhHHHHH
Q 006842 591 AVTSLNLANNFLTKFGQSAL 610 (629)
Q Consensus 591 ~L~~L~L~~N~i~~~~~~~l 610 (629)
+|++|+|++|.|+.++...|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 45666666666666555544
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.10 E-value=0.59 Score=49.15 Aligned_cols=17 Identities=29% Similarity=0.132 Sum_probs=13.1
Q ss_pred CCCcCEEEcccCCCCcc
Q 006842 498 NNTISILDLRANGLRDE 514 (629)
Q Consensus 498 ~~~L~~L~Ls~N~l~~~ 514 (629)
.+.+..++|++|++...
T Consensus 217 ~p~i~sl~lsnNrL~~L 233 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHL 233 (585)
T ss_pred Ccceeeeecccchhhch
Confidence 37788888888888755
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.63 E-value=2.6 Score=44.51 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=36.8
Q ss_pred cCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCC--CCChHHHHHHHHHHhcCCCccEEEeeCCCCCH
Q 006842 356 SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN--DIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (629)
Q Consensus 356 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 429 (629)
.+.+.+..++|++|++..... +...-...|+|+.|+|++| .+... ..+.. + +...|++|-+.||.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~--~sslsq~apklk~L~LS~N~~~~~~~--~el~K-~-k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDA--LSSLSQIAPKLKTLDLSHNHSKISSE--SELDK-L-KGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhh--hhHHHHhcchhheeecccchhhhcch--hhhhh-h-cCCCHHHeeecCCcccc
Confidence 344567777777776655322 2223345577777777777 33332 11111 1 12456777777777643
No 93
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.24 E-value=3.1 Score=24.33 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=8.7
Q ss_pred cccceeecCCCCCCc
Q 006842 560 EALTSIDLAFNEIRD 574 (629)
Q Consensus 560 ~~L~~LdLs~N~i~~ 574 (629)
.+|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 346666666666644
No 94
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=61.02 E-value=0.25 Score=45.95 Aligned_cols=84 Identities=18% Similarity=0.083 Sum_probs=46.0
Q ss_pred CCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHH
Q 006842 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (629)
Q Consensus 246 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (629)
...+.||++.|++...+ .-+..++.|..||++.|.| ..+++.+.+...+..+++..|..+..+ ..
T Consensus 42 kr~tvld~~s~r~vn~~-----~n~s~~t~~~rl~~sknq~-----~~~~~d~~q~~e~~~~~~~~n~~~~~p-----~s 106 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLG-----KNFSILTRLVRLDLSKNQI-----KFLPKDAKQQRETVNAASHKNNHSQQP-----KS 106 (326)
T ss_pred ceeeeehhhhhHHHhhc-----cchHHHHHHHHHhccHhhH-----hhChhhHHHHHHHHHHHhhccchhhCC-----cc
Confidence 55556666665544321 1122223456666666665 455555555566666666666544333 34
Q ss_pred hcCCCCccEEEccCCCCCh
Q 006842 326 LEGNKSLRELHLHGNSIGD 344 (629)
Q Consensus 326 l~~~~~L~~L~Ls~n~l~~ 344 (629)
+...+.++++++-+|.+..
T Consensus 107 ~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred ccccCCcchhhhccCcchH
Confidence 5566777777777766543
No 95
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=48.04 E-value=11 Score=22.04 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=8.1
Q ss_pred ccceeecCCCCCCc
Q 006842 561 ALTSIDLAFNEIRD 574 (629)
Q Consensus 561 ~L~~LdLs~N~i~~ 574 (629)
+|+.|++++|+++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 45556666665554
No 96
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=20.14 E-value=89 Score=26.23 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=6.7
Q ss_pred HHHHhcCCCcCEEEccc
Q 006842 492 ADMLRYNNTISILDLRA 508 (629)
Q Consensus 492 ~~~l~~~~~L~~L~Ls~ 508 (629)
..++..++.|.. +|++
T Consensus 54 ~~mF~~~~~l~~-dls~ 69 (120)
T PF03382_consen 54 SGMFAGCSSLNQ-DLSN 69 (120)
T ss_pred HHHHhhhhhcCC-Cccc
Confidence 333334444444 4433
Done!