Query 006842
Match_columns 629
No_of_seqs 724 out of 4118
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 10:25:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-45 5.6E-50 394.8 42.7 445 161-620 2-457 (461)
2 1z7x_W Ribonuclease inhibitor; 100.0 2.3E-42 7.9E-47 370.4 43.7 435 151-594 17-459 (461)
3 3rgz_A Protein brassinosteroid 100.0 4.6E-39 1.6E-43 365.3 -19.0 410 160-625 221-716 (768)
4 3t6q_A CD180 antigen; protein- 100.0 7.5E-38 2.6E-42 347.1 -14.5 415 158-625 77-559 (606)
5 3rgz_A Protein brassinosteroid 100.0 7.8E-38 2.7E-42 355.2 -17.5 393 154-608 239-722 (768)
6 2ca6_A RAN GTPase-activating p 100.0 1.7E-31 5.9E-36 278.8 30.1 291 168-459 10-319 (386)
7 2ca6_A RAN GTPase-activating p 100.0 1.2E-31 4.2E-36 279.9 27.2 300 195-495 9-329 (386)
8 3t6q_A CD180 antigen; protein- 100.0 2.5E-36 8.7E-41 334.8 -8.9 394 157-605 100-562 (606)
9 3ogk_B Coronatine-insensitive 100.0 1.2E-31 4.1E-36 296.5 25.0 413 152-611 102-534 (592)
10 2p1m_B Transport inhibitor res 100.0 6.5E-30 2.2E-34 282.6 32.5 410 152-611 95-527 (594)
11 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-33 9.4E-38 306.7 5.2 183 385-607 332-514 (549)
12 3ogk_B Coronatine-insensitive 100.0 4.1E-30 1.4E-34 284.1 30.1 415 155-611 66-509 (592)
13 4eco_A Uncharacterized protein 100.0 7.1E-35 2.4E-39 323.4 -8.4 361 184-610 200-607 (636)
14 1o6v_A Internalin A; bacterial 100.0 5.7E-32 2E-36 289.5 13.7 348 160-606 44-391 (466)
15 3goz_A Leucine-rich repeat-con 100.0 1.6E-30 5.3E-35 268.8 23.7 296 167-466 3-307 (362)
16 4eco_A Uncharacterized protein 100.0 7E-35 2.4E-39 323.5 -10.7 340 212-606 200-582 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 4.3E-34 1.5E-38 322.6 -4.7 373 183-614 441-851 (876)
18 4ecn_A Leucine-rich repeat pro 100.0 3.4E-34 1.2E-38 323.4 -6.0 345 211-608 441-824 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 6.2E-33 2.1E-37 301.7 2.3 383 157-606 40-484 (520)
20 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-33 6.3E-38 308.1 -2.7 417 158-624 46-508 (549)
21 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-34 1E-38 318.3 -9.4 218 359-608 307-539 (606)
22 3goz_A Leucine-rich repeat-con 100.0 3.8E-30 1.3E-34 265.9 21.8 295 195-493 3-306 (362)
23 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-33 7.3E-38 305.3 -4.7 404 162-624 21-479 (520)
24 1ziw_A TOLL-like receptor 3; i 100.0 9.2E-34 3.2E-38 318.5 -10.3 403 160-607 47-521 (680)
25 2p1m_B Transport inhibitor res 100.0 9.5E-29 3.3E-33 273.3 29.6 398 151-601 119-542 (594)
26 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-33 4.3E-38 313.1 -10.9 386 159-604 77-559 (606)
27 1ziw_A TOLL-like receptor 3; i 100.0 5.9E-33 2E-37 312.0 -6.6 393 161-603 170-622 (680)
28 3v47_A TOLL-like receptor 5B a 100.0 2.5E-32 8.5E-37 291.8 -2.4 342 162-547 30-385 (455)
29 3j0a_A TOLL-like receptor 5; m 100.0 1E-33 3.5E-38 324.7 -14.9 400 158-611 44-547 (844)
30 3v47_A TOLL-like receptor 5B a 100.0 8.1E-33 2.8E-37 295.6 -7.0 386 165-607 13-412 (455)
31 1o6v_A Internalin A; bacterial 100.0 5E-30 1.7E-34 274.5 14.3 326 158-574 64-389 (466)
32 2z63_A TOLL-like receptor 4, v 100.0 2.9E-34 9.9E-39 315.9 -19.3 384 160-607 50-535 (570)
33 4fmz_A Internalin; leucine ric 100.0 7.4E-30 2.5E-34 262.5 14.7 285 160-514 42-326 (347)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-32 5.4E-37 301.2 -8.2 394 162-605 52-512 (562)
35 4fmz_A Internalin; leucine ric 100.0 2.1E-29 7.1E-34 259.1 14.9 282 189-547 43-325 (347)
36 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-32 1E-36 299.0 -7.1 369 157-578 71-515 (562)
37 2z63_A TOLL-like receptor 4, v 100.0 1.3E-32 4.3E-37 302.9 -13.9 367 159-577 73-535 (570)
38 3j0a_A TOLL-like receptor 5; m 100.0 9.8E-33 3.3E-37 316.5 -17.2 399 158-604 69-561 (844)
39 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-29 6.6E-34 268.0 7.0 346 160-609 40-393 (457)
40 3o6n_A APL1; leucine-rich repe 99.9 2.1E-29 7.1E-34 263.4 3.3 266 189-513 44-309 (390)
41 2id5_A Lingo-1, leucine rich r 99.9 6.5E-30 2.2E-34 274.7 -4.3 303 190-547 32-334 (477)
42 2id5_A Lingo-1, leucine rich r 99.9 9.4E-30 3.2E-34 273.5 -5.0 321 193-574 14-334 (477)
43 4g8a_A TOLL-like receptor 4; l 99.9 4.7E-30 1.6E-34 286.0 -9.6 149 439-613 441-591 (635)
44 3o6n_A APL1; leucine-rich repe 99.9 1E-28 3.5E-33 258.1 0.6 316 217-610 44-359 (390)
45 3oja_B Anopheles plasmodium-re 99.9 2E-28 6.8E-33 270.1 1.6 314 189-578 50-363 (597)
46 3bz5_A Internalin-J, INLJ; leu 99.9 4E-27 1.4E-31 250.1 8.5 308 188-605 40-354 (457)
47 3oja_B Anopheles plasmodium-re 99.9 7.4E-28 2.5E-32 265.5 -1.2 316 217-610 50-365 (597)
48 1jl5_A Outer protein YOPM; leu 99.9 2.4E-27 8E-32 251.7 -0.5 339 162-613 71-421 (454)
49 1jl5_A Outer protein YOPM; leu 99.9 2.2E-27 7.6E-32 251.9 -6.4 55 533-604 317-371 (454)
50 1xku_A Decorin; proteoglycan, 99.9 7.1E-27 2.4E-31 238.3 -5.8 153 219-400 32-184 (330)
51 1xku_A Decorin; proteoglycan, 99.9 1.4E-26 4.6E-31 236.3 -5.4 222 191-456 32-253 (330)
52 2z80_A TOLL-like receptor 2, v 99.9 2.7E-25 9.2E-30 228.9 3.8 262 189-514 30-292 (353)
53 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-26 5.4E-31 257.5 -7.2 204 358-586 370-594 (635)
54 2ft3_A Biglycan; proteoglycan, 99.9 4.9E-27 1.7E-31 239.7 -13.0 249 300-601 76-331 (332)
55 2z80_A TOLL-like receptor 2, v 99.9 1.1E-24 3.8E-29 224.2 3.8 261 160-456 29-290 (353)
56 2ft3_A Biglycan; proteoglycan, 99.9 2.7E-26 9.3E-31 234.2 -11.3 296 163-544 34-331 (332)
57 3un9_A NLR family member X1; l 99.9 4.2E-21 1.4E-25 197.5 24.0 209 275-486 73-285 (372)
58 3un9_A NLR family member X1; l 99.9 4.2E-21 1.4E-25 197.6 23.9 211 161-374 71-285 (372)
59 1ogq_A PGIP-2, polygalacturona 99.9 2E-25 6.8E-30 225.5 -10.0 134 359-514 149-283 (313)
60 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-25 4.7E-30 226.7 -11.7 250 275-571 51-302 (313)
61 2ast_B S-phase kinase-associat 99.9 4.2E-21 1.4E-25 196.1 19.8 161 328-509 91-257 (336)
62 2ast_B S-phase kinase-associat 99.9 1E-20 3.6E-25 193.1 21.3 235 246-517 70-311 (336)
63 3o53_A Protein LRIM1, AGAP0063 99.9 5.2E-24 1.8E-28 215.6 -3.3 219 272-573 32-250 (317)
64 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-23 1.3E-27 225.9 2.8 286 218-601 40-326 (622)
65 3o53_A Protein LRIM1, AGAP0063 99.9 5.9E-23 2E-27 207.9 3.1 238 245-543 33-272 (317)
66 3g06_A SSPH2 (leucine-rich rep 99.9 4.3E-22 1.5E-26 217.7 9.5 261 190-549 40-300 (622)
67 1wwl_A Monocyte differentiatio 99.9 4.6E-24 1.6E-28 215.5 -5.6 211 359-605 95-311 (312)
68 2z66_A Variable lymphocyte rec 99.8 6.8E-25 2.3E-29 221.2 -13.5 136 274-428 28-163 (306)
69 1ozn_A Reticulon 4 receptor; N 99.8 9.7E-24 3.3E-28 210.4 -8.4 158 274-456 32-190 (285)
70 2z66_A Variable lymphocyte rec 99.8 7.8E-24 2.7E-28 213.4 -9.4 283 276-610 9-294 (306)
71 1wwl_A Monocyte differentiatio 99.8 4.4E-23 1.5E-27 208.3 -5.8 161 387-575 149-311 (312)
72 1ozn_A Reticulon 4 receptor; N 99.8 1E-22 3.4E-27 203.0 -3.3 223 221-483 14-237 (285)
73 3zyi_A Leucine-rich repeat-con 99.8 1.4E-22 4.7E-27 215.8 -2.8 246 276-572 56-302 (452)
74 3zyj_A Leucine-rich repeat-con 99.8 1.3E-22 4.4E-27 215.3 -3.3 247 275-572 44-291 (440)
75 3zyj_A Leucine-rich repeat-con 99.8 1.2E-22 4.2E-27 215.4 -3.9 248 247-546 44-292 (440)
76 4fcg_A Uncharacterized protein 99.8 1.1E-22 3.8E-27 206.6 -4.3 236 245-547 80-315 (328)
77 4fcg_A Uncharacterized protein 99.8 1.2E-22 4.3E-27 206.2 -4.2 228 301-605 80-316 (328)
78 4glp_A Monocyte differentiatio 99.8 4.4E-22 1.5E-26 200.8 -0.7 240 331-605 65-309 (310)
79 3zyi_A Leucine-rich repeat-con 99.8 5.2E-22 1.8E-26 211.3 -1.4 247 248-546 56-303 (452)
80 3oja_A Leucine-rich immune mol 99.8 4.4E-22 1.5E-26 213.2 -2.6 148 275-457 35-183 (487)
81 3oja_A Leucine-rich immune mol 99.8 2.3E-21 7.9E-26 207.6 0.9 235 247-541 35-270 (487)
82 4glp_A Monocyte differentiatio 99.8 1.7E-21 5.8E-26 196.5 -0.8 66 163-231 65-130 (310)
83 1h6u_A Internalin H; cell adhe 99.8 7.4E-19 2.5E-23 176.7 9.7 146 274-456 41-186 (308)
84 1h6u_A Internalin H; cell adhe 99.8 4.3E-19 1.5E-23 178.5 6.7 193 328-574 39-231 (308)
85 2z62_A TOLL-like receptor 4, v 99.8 1.1E-20 3.8E-25 187.2 -4.9 208 330-605 28-239 (276)
86 2z62_A TOLL-like receptor 4, v 99.7 4.5E-20 1.5E-24 182.8 -2.5 135 275-429 29-163 (276)
87 1io0_A Tropomodulin; LRR prote 99.7 2.9E-17 1E-21 151.6 16.4 148 151-300 25-175 (185)
88 1p9a_G Platelet glycoprotein I 99.7 5.9E-20 2E-24 182.9 -2.4 190 360-586 32-222 (290)
89 3rfs_A Internalin B, repeat mo 99.7 2.3E-19 7.9E-24 177.2 0.8 108 412-548 130-237 (272)
90 3rfs_A Internalin B, repeat mo 99.7 4.3E-19 1.5E-23 175.3 2.4 203 274-520 41-243 (272)
91 1io0_A Tropomodulin; LRR prote 99.7 5.9E-17 2E-21 149.5 14.7 140 179-318 25-167 (185)
92 2o6q_A Variable lymphocyte rec 99.7 1.8E-19 6.3E-24 177.7 -3.6 130 303-456 17-146 (270)
93 1p9a_G Platelet glycoprotein I 99.7 5.8E-19 2E-23 175.7 -0.2 176 219-427 32-207 (290)
94 2o6q_A Variable lymphocyte rec 99.7 4.1E-19 1.4E-23 175.2 -2.6 184 302-514 37-220 (270)
95 3cvr_A Invasion plasmid antige 99.6 1.6E-17 5.4E-22 179.4 -0.3 196 330-584 59-254 (571)
96 3m19_A Variable lymphocyte rec 99.6 5E-18 1.7E-22 165.5 -4.1 157 330-514 14-170 (251)
97 2xwt_C Thyrotropin receptor; s 99.6 2.9E-18 9.8E-23 165.9 -6.4 86 331-429 32-119 (239)
98 1pgv_A TMD-1, tropomodulin TMD 99.6 4.2E-15 1.4E-19 135.5 14.7 148 151-300 30-181 (197)
99 3m19_A Variable lymphocyte rec 99.6 9E-18 3.1E-22 163.7 -3.7 181 302-514 14-194 (251)
100 2xwt_C Thyrotropin receptor; s 99.6 3.4E-18 1.1E-22 165.4 -6.8 132 302-456 31-169 (239)
101 1h6t_A Internalin B; cell adhe 99.6 7.2E-16 2.5E-20 153.5 9.6 171 301-514 45-215 (291)
102 1pgv_A TMD-1, tropomodulin TMD 99.6 7.5E-15 2.6E-19 133.9 15.3 134 379-512 33-170 (197)
103 1h6t_A Internalin B; cell adhe 99.6 2.5E-16 8.5E-21 156.8 5.8 187 306-547 28-214 (291)
104 3cvr_A Invasion plasmid antige 99.6 1.6E-16 5.4E-21 171.6 1.7 187 301-548 58-245 (571)
105 4ezg_A Putative uncharacterize 99.6 4.6E-16 1.6E-20 145.5 4.6 80 360-455 113-193 (197)
106 4ezg_A Putative uncharacterize 99.6 1.4E-15 4.9E-20 142.1 6.9 151 246-429 44-195 (197)
107 1m9s_A Internalin B; cell inva 99.6 5.5E-16 1.9E-20 169.3 1.7 190 276-514 23-212 (605)
108 1m9s_A Internalin B; cell inva 99.5 5.6E-15 1.9E-19 161.2 8.1 172 272-486 41-212 (605)
109 1xeu_A Internalin C; cellular 99.5 4.4E-16 1.5E-20 152.5 -3.1 168 330-547 19-186 (263)
110 2o6s_A Variable lymphocyte rec 99.5 1.5E-15 5E-20 143.4 -1.2 152 360-548 29-180 (208)
111 2xot_A Amphoterin-induced prot 99.5 1.5E-15 5.2E-20 156.2 -1.2 179 305-512 21-202 (361)
112 1xeu_A Internalin C; cellular 99.5 6.1E-15 2.1E-19 144.4 2.8 41 383-429 124-164 (263)
113 2xot_A Amphoterin-induced prot 99.5 6.7E-16 2.3E-20 158.8 -4.3 131 361-514 20-151 (361)
114 2o6s_A Variable lymphocyte rec 99.5 2.8E-15 9.7E-20 141.4 -0.3 160 330-521 28-187 (208)
115 1dce_A Protein (RAB geranylger 99.5 3.3E-16 1.1E-20 170.0 -9.0 190 273-514 348-548 (567)
116 4ay9_X Follicle-stimulating ho 99.5 5.8E-17 2E-21 166.1 -14.7 105 249-373 12-118 (350)
117 1dce_A Protein (RAB geranylger 99.5 5.7E-16 1.9E-20 168.1 -8.1 209 245-506 348-567 (567)
118 4b8c_D Glucose-repressible alc 99.4 1.6E-14 5.4E-19 161.8 -1.4 153 379-570 216-369 (727)
119 2v9t_B SLIT homolog 2 protein 99.4 4.3E-15 1.5E-19 141.3 -5.2 152 333-512 14-165 (220)
120 4b8c_D Glucose-repressible alc 99.4 1.3E-14 4.6E-19 162.3 -2.4 225 246-514 173-406 (727)
121 3e6j_A Variable lymphocyte rec 99.4 4.2E-14 1.4E-18 135.4 1.2 61 359-428 88-148 (229)
122 2ra8_A Uncharacterized protein 99.4 6.5E-13 2.2E-17 135.2 9.8 144 359-510 193-341 (362)
123 2v9t_B SLIT homolog 2 protein 99.4 2.3E-14 7.8E-19 136.3 -0.9 63 359-429 80-142 (220)
124 2ra8_A Uncharacterized protein 99.4 9.9E-13 3.4E-17 133.9 11.1 209 218-437 107-329 (362)
125 2v70_A SLIT-2, SLIT homolog 2 99.4 9.1E-15 3.1E-19 139.0 -4.6 105 333-457 14-119 (220)
126 3e6j_A Variable lymphocyte rec 99.4 5.6E-14 1.9E-18 134.5 0.4 153 248-429 21-173 (229)
127 2v70_A SLIT-2, SLIT homolog 2 99.4 2E-14 6.7E-19 136.7 -2.9 152 305-483 14-165 (220)
128 4ay9_X Follicle-stimulating ho 99.4 2.4E-15 8.2E-20 154.0 -10.7 202 221-458 12-217 (350)
129 2ell_A Acidic leucine-rich nuc 99.3 1.7E-13 6E-18 124.3 2.2 65 440-514 46-110 (168)
130 2je0_A Acidic leucine-rich nuc 99.3 3.4E-13 1.2E-17 119.6 3.6 15 499-513 88-102 (149)
131 3sb4_A Hypothetical leucine ri 99.3 7.1E-14 2.4E-18 141.8 -3.6 222 301-566 100-327 (329)
132 2ell_A Acidic leucine-rich nuc 99.3 5.1E-13 1.8E-17 121.1 2.1 137 360-514 25-162 (168)
133 2je0_A Acidic leucine-rich nuc 99.3 4.1E-12 1.4E-16 112.6 7.8 130 302-451 17-148 (149)
134 1a9n_A U2A', U2A'; complex (nu 99.3 6.7E-13 2.3E-17 121.4 1.0 60 385-456 17-77 (176)
135 1ds9_A Outer arm dynein; leuci 99.3 6.1E-14 2.1E-18 131.0 -6.2 45 529-575 111-155 (198)
136 3sb4_A Hypothetical leucine ri 99.3 2.1E-13 7.2E-18 138.3 -2.9 247 246-542 25-283 (329)
137 1a9n_A U2A', U2A'; complex (nu 99.2 3.6E-12 1.2E-16 116.5 3.7 133 301-456 18-153 (176)
138 1ds9_A Outer arm dynein; leuci 99.2 8.6E-13 2.9E-17 123.2 -2.5 114 466-607 43-157 (198)
139 1w8a_A SLIT protein; signaling 99.2 1.3E-13 4.3E-18 128.1 -8.5 132 360-514 9-141 (192)
140 1w8a_A SLIT protein; signaling 99.1 1.1E-11 3.6E-16 115.0 0.9 84 360-455 55-138 (192)
141 2wfh_A SLIT homolog 2 protein 99.1 3.1E-12 1.1E-16 118.7 -3.8 105 361-485 12-116 (193)
142 2wfh_A SLIT homolog 2 protein 99.1 1.2E-11 4.1E-16 114.7 0.0 107 360-483 32-138 (193)
143 2o6r_A Variable lymphocyte rec 99.1 4.2E-12 1.4E-16 116.1 -3.8 131 417-575 9-139 (177)
144 2o6r_A Variable lymphocyte rec 99.0 7.5E-11 2.5E-15 107.7 3.2 17 384-400 73-89 (177)
145 3g39_A Variable lymphocyte rec 98.9 5.2E-10 1.8E-14 101.3 2.2 85 360-456 31-115 (170)
146 3e4g_A ATP synthase subunit S, 98.8 3.2E-09 1.1E-13 94.8 6.6 93 162-262 61-156 (176)
147 3g39_A Variable lymphocyte rec 98.8 9.4E-10 3.2E-14 99.6 1.4 41 384-428 75-115 (170)
148 3e4g_A ATP synthase subunit S, 98.8 7.3E-09 2.5E-13 92.5 7.1 93 190-290 61-156 (176)
149 2r9u_A Variable lymphocyte rec 98.8 2.4E-10 8.4E-15 103.8 -2.8 105 446-574 15-119 (174)
150 2r9u_A Variable lymphocyte rec 98.8 1.5E-09 5.1E-14 98.6 1.5 85 360-456 34-118 (174)
151 4fdw_A Leucine rich hypothetic 98.7 1.4E-10 4.9E-15 120.1 -8.2 124 217-368 112-235 (401)
152 4fdw_A Leucine rich hypothetic 98.7 9.3E-11 3.2E-15 121.5 -10.7 267 273-603 112-383 (401)
153 4fs7_A Uncharacterized protein 98.4 5.8E-10 2E-14 115.8 -12.4 310 158-543 67-376 (394)
154 4fs7_A Uncharacterized protein 98.4 1.4E-09 4.7E-14 113.0 -11.8 130 185-340 66-195 (394)
155 2ifg_A High affinity nerve gro 98.3 3.3E-07 1.1E-11 93.2 4.1 43 298-344 27-70 (347)
156 2ifg_A High affinity nerve gro 98.3 1.9E-07 6.7E-12 94.9 2.0 105 249-373 11-117 (347)
157 3rw6_A Nuclear RNA export fact 98.2 2.6E-06 8.9E-11 82.0 8.3 84 358-449 169-257 (267)
158 3rw6_A Nuclear RNA export fact 97.9 1E-05 3.5E-10 77.8 5.2 14 561-574 221-234 (267)
159 4gt6_A Cell surface protein; l 97.9 2.5E-07 8.4E-12 95.9 -6.6 130 185-339 58-191 (394)
160 4gt6_A Cell surface protein; l 97.7 2.3E-06 7.9E-11 88.5 -1.8 129 356-511 262-390 (394)
161 3rfe_A Platelet glycoprotein I 93.4 0.0061 2.1E-07 51.5 -2.3 68 502-585 11-81 (130)
162 4h09_A Hypothetical leucine ri 92.7 0.031 1.1E-06 56.8 1.3 135 299-459 214-348 (379)
163 4h09_A Hypothetical leucine ri 92.0 0.029 9.7E-07 57.1 -0.0 280 158-491 65-352 (379)
164 3rfe_A Platelet glycoprotein I 91.8 0.068 2.3E-06 44.9 2.2 36 360-399 32-67 (130)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.6e-45 Score=394.85 Aligned_cols=445 Identities=23% Similarity=0.322 Sum_probs=387.6
Q ss_pred cCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHH
Q 006842 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (629)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 240 (629)
.+++++|+|+++.+++..... .+..+++|++|+|++|.+++.+...++..+..+++|++|+|++|.+++.++..+..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~---~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAE---LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHH---HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CccceehhhhhcccCchhHHH---HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 357899999999999887544 34456899999999999999999999999999999999999999999888777776
Q ss_pred HHhhCC-CCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhh-cCCccEEeccCCCCChhh
Q 006842 241 ILVDNA-GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALG 318 (629)
Q Consensus 241 ~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~ 318 (629)
.+.... +|++|+|++|.+++.++..++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.++..+
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 654332 799999999999999999999999999999999999999998888888877654 568999999999999999
Q ss_pred HHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCC
Q 006842 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398 (629)
Q Consensus 319 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 398 (629)
...++..+..+++|++|++++|.+++.++..+...+....++|++|++++|.+++.+...++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 88999999999999999999999999999889888876777899999999999999988899999999999999999999
Q ss_pred CChHHHHHHHHHHh-cCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcC-CCccEE
Q 006842 399 IGDEGAEKIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTL 476 (629)
Q Consensus 399 l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L 476 (629)
+++.++..++..+. .+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+... ++|++|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 99998888877765 4789999999999999999999999999999999999999999999998888877654 599999
Q ss_pred eccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHh-----hhhhhhhhhhhhcchh--hH
Q 006842 477 KLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYS-----LKHMLFYSLCINYLQG--AK 549 (629)
Q Consensus 477 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~-----l~~L~~L~Ls~N~l~~--~~ 549 (629)
++++|.++..+...+...+..+++|++|++++|.+++. .+..+.. .++|+.|++++|.+++ ..
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~----------~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 388 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA----------GVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 388 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH----------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc----------cHHHHHHHHcCCCCceEEEECCCCCCChhhHH
Confidence 99999999999999999999999999999999999876 3344433 5699999999999984 33
Q ss_pred HHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHHHHHHHHhhhc
Q 006842 550 CLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEM 620 (629)
Q Consensus 550 ~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~l~~~l 620 (629)
.++..+.. +++|++||+++|+|++.+...+.+.+++.. .+|+.|++.++.+.....+.+..+.....++
T Consensus 389 ~l~~~l~~-~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~-~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l 457 (461)
T 1z7x_W 389 SLAATLLA-NHSLRELDLSNNCLGDAGILQLVESVRQPG-CLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 457 (461)
T ss_dssp HHHHHHHH-CCCCCEEECCSSSCCHHHHHHHHHHHTSTT-CCCCEEECTTCCCCHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHh-CCCccEEECCCCCCCHHHHHHHHHHhccCC-cchhheeecccccCHHHHHHHHHHhccCCCc
Confidence 45666654 489999999999999999999998887433 4799999999999988877777766655444
No 2
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.3e-42 Score=370.37 Aligned_cols=435 Identities=18% Similarity=0.213 Sum_probs=374.3
Q ss_pred HHHHHHHHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCC-CcCEEEccCCC
Q 006842 151 KQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLNLSGNP 229 (629)
Q Consensus 151 ~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~ 229 (629)
......++..+++|++|+|++|.+++.+...++..+..+++|++|+|++|.+++.+...+...+.... +|++|+|++|.
T Consensus 17 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 17 DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 96 (461)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC
T ss_pred chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC
Confidence 34466677889999999999999999999999999999999999999999999988888877665433 79999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhc-CCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEe
Q 006842 230 IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN-NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLH 308 (629)
Q Consensus 230 i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 308 (629)
|++.+...++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.+++.+...++..+..+++|++|+
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 9999888899999999999999999999999888888877553 568999999999999999999999999999999999
Q ss_pred ccCCCCChhhHHHHHHHhc-CCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHH-cC
Q 006842 309 LNGNYGGALGANALAKGLE-GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK-NC 386 (629)
Q Consensus 309 L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~ 386 (629)
+++|.+++.+...+...+. ..++|++|++++|.+++.+...++..+. .+++|++|++++|.+++.+...+...+. .+
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~ 255 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPS 255 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCC
Confidence 9999999888887777665 4669999999999999988887877765 5568999999999999988877776654 58
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcC-CcccEEECcCCCCChhHHHHHHH
Q 006842 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSE 465 (629)
Q Consensus 387 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~ 465 (629)
++|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+...+... ++|++|++++|.+++.+...++.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888877655 69999999999999999999999
Q ss_pred HHhcCCCccEEeccCCCCCHHHHHHHHHHHhc-CCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhc
Q 006842 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRY-NNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINY 544 (629)
Q Consensus 466 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~ 544 (629)
.+..+++|++|++++|.+++.++..+...+.. +++|++|++++|.+++. +...++..+..+++|++|++++|+
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~------~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS------SCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH------HHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChh------hHHHHHHHHHhCCCccEEECCCCC
Confidence 99999999999999999999999998887765 67999999999999973 222368888999999999999999
Q ss_pred chhh--HHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceee
Q 006842 545 LQGA--KCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTS 594 (629)
Q Consensus 545 l~~~--~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~ 594 (629)
+++. ..+...+.....+|+.|++.++.+.......+.......+ .|+.
T Consensus 410 i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p--~l~i 459 (461)
T 1z7x_W 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKP--SLRV 459 (461)
T ss_dssp CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCT--TSEE
T ss_pred CCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCC--CcEe
Confidence 9753 3444444433457999999999998877776665544444 3544
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.6e-39 Score=365.26 Aligned_cols=410 Identities=20% Similarity=0.234 Sum_probs=233.5
Q ss_pred hcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHH
Q 006842 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (629)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (629)
.+++|++|+|++|.++.. ++..+..+++|++|++++|.++..... ..+++|++|++++|.+++. ++
T Consensus 221 ~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~------~~l~~L~~L~L~~n~l~~~----ip 286 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGD----FSRAISTCTELKLLNISSNQFVGPIPP------LPLKSLQYLSLAENKFTGE----IP 286 (768)
T ss_dssp TCCSCCEEECCSSCCCSC----HHHHTTTCSSCCEEECCSSCCEESCCC------CCCTTCCEEECCSSEEEES----CC
T ss_pred cCCCCCEEECcCCcCCCc----ccHHHhcCCCCCEEECCCCcccCccCc------cccCCCCEEECcCCccCCc----cC
Confidence 445555555555555432 234444455555555555544311000 0233344444444433211 11
Q ss_pred HHHhh-CCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHH-HHHhhcCCccEEeccCCCCChh
Q 006842 240 DILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLA-EALLENSTIRSLHLNGNYGGAL 317 (629)
Q Consensus 240 ~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~ 317 (629)
..+.. +++|++|+|++|.++.. ++..+..+++|++|++++|.+++. ++ ..+..+++|++|++++|.++..
T Consensus 287 ~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 287 DFLSGACDTLTGLDLSGNHFYGA----VPPFFGSCSLLESLALSSNNFSGE----LPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp CCSCTTCTTCSEEECCSSEEEEC----CCGGGGGCTTCCEEECCSSEEEEE----CCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred HHHHhhcCcCCEEECcCCcCCCc----cchHHhcCCCccEEECCCCcccCc----CCHHHHhcCCCCCEEeCcCCccCcc
Confidence 12222 36666777766666543 333445556666666666655421 11 2244556666666666654321
Q ss_pred hHHHHHH---------------------HhcC--CCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCch
Q 006842 318 GANALAK---------------------GLEG--NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK 374 (629)
Q Consensus 318 ~~~~l~~---------------------~l~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 374 (629)
....+.. .+.. +++|++|++++|.+++. ++..+ ..+++|++|++++|.++..
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l-~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK----IPPTL-SNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE----CCGGG-GGCTTCCEEECCSSEEESC
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc----cCHHH-hcCCCCCEEECcCCcccCc
Confidence 1111111 1111 44566666666655432 11122 2445677777777776654
Q ss_pred hHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCC
Q 006842 375 GAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454 (629)
Q Consensus 375 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 454 (629)
++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|+++.. ++..+..+++|++|++++|+
T Consensus 434 ----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 434 ----IPSSLGSLSKLRDLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNR 501 (768)
T ss_dssp ----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSC
T ss_pred ----ccHHHhcCCCCCEEECCCCcccCc----CCHHHcCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCc
Confidence 555667777777777777777654 555666777788888888877754 45556677888888888887
Q ss_pred CChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCch-----------
Q 006842 455 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLS----------- 523 (629)
Q Consensus 455 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~----------- 523 (629)
+++..+.. +..+++|++|+|++|.++...+.. +..+++|++|++++|.+.+.+|..+....
T Consensus 502 l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 502 LTGEIPKW----IGRLENLAILKLSNNSFSGNIPAE----LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp CCSCCCGG----GGGCTTCCEEECCSSCCEEECCGG----GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred cCCcCChH----HhcCCCCCEEECCCCcccCcCCHH----HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 76543332 345577888888888876544433 33458888888888887776665431100
Q ss_pred -------------------------------------------------hhhHHHHhhhhhhhhhhhhhcchhhHHHHHH
Q 006842 524 -------------------------------------------------FFHSAIYSLKHMLFYSLCINYLQGAKCLAQS 554 (629)
Q Consensus 524 -------------------------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~ 554 (629)
..|..+..+++|+.|++++|+++|. +|..
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~--ip~~ 651 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY--IPKE 651 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC--CCGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc--CCHH
Confidence 0122344556777777888877765 3444
Q ss_pred HhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHHHHHHHH-hhhccceEE
Q 006842 555 FKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDL-VYEMSEKEV 625 (629)
Q Consensus 555 ~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~l-~~~l~~~~i 625 (629)
+..+ +.|+.|||++|++++.+|..+..+ .+|++|||++|++++..|..+..+..+ ..++++|.+
T Consensus 652 l~~l-~~L~~L~Ls~N~l~g~ip~~l~~L------~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 652 IGSM-PYLFILNLGHNDISGSIPDEVGDL------RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp GGGC-TTCCEEECCSSCCCSCCCGGGGGC------TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred Hhcc-ccCCEEeCcCCccCCCCChHHhCC------CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 4433 677788888888877777777665 467788888888877777777666554 345555554
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.5e-38 Score=347.12 Aligned_cols=415 Identities=17% Similarity=0.193 Sum_probs=215.8
Q ss_pred HHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHH
Q 006842 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (629)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (629)
+..+++|++|+|++|.+... .+..+..+++|++|++++|.++..+... +..+++|++|++++|.++.....
T Consensus 77 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~~- 147 (606)
T 3t6q_A 77 FQSQHRLDTLVLTANPLIFM----AETALSGPKALKHLFFIQTGISSIDFIP----LHNQKTLESLYLGSNHISSIKLP- 147 (606)
T ss_dssp TTTCTTCCEEECTTCCCSEE----CTTTTSSCTTCCEEECTTSCCSCGGGSC----CTTCTTCCEEECCSSCCCCCCCC-
T ss_pred ccCccccCeeeCCCCccccc----ChhhhcccccccEeeccccCcccCCcch----hccCCcccEEECCCCcccccCcc-
Confidence 34566666666666666543 1334555666666666666665432222 34556677777777666543211
Q ss_pred HHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCcc--EEEeccCCCChhhHHHH----------------HHHHh
Q 006842 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILR--VLELNNNMIDYSGFTSL----------------AEALL 299 (629)
Q Consensus 238 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~--~L~L~~n~i~~~~~~~l----------------~~~l~ 299 (629)
.+..+++|++|++++|.++.... ..+..+++|+ +|++++|.++......+ ...+.
T Consensus 148 ---~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 220 (606)
T 3t6q_A 148 ---KGFPTEKLKVLDFQNNAIHYLSK----EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220 (606)
T ss_dssp ---TTCCCTTCCEEECCSSCCCEECH----HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHH
T ss_pred ---cccCCcccCEEEcccCcccccCh----hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhh
Confidence 11124667777777777665422 3334446666 66777776653221110 00000
Q ss_pred hc-------------------------------CCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHH
Q 006842 300 EN-------------------------------STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (629)
Q Consensus 300 ~~-------------------------------~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 348 (629)
.+ .+|+.|++++|.++..+. ..+..+++|++|++++|.++.
T Consensus 221 ~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~---- 292 (606)
T 3t6q_A 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS----NTFHCFSGLQELDLTATHLSE---- 292 (606)
T ss_dssp HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT----TTTTTCTTCSEEECTTSCCSC----
T ss_pred hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH----HHhccccCCCEEeccCCccCC----
Confidence 00 045555555555554433 235566777777777776664
Q ss_pred HHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHH-HHHhcCCCccEEEeeCCCC
Q 006842 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA-DALKQNRTITTIDLGGNNI 427 (629)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i 427 (629)
++..+ ..+++|++|++++|.++.. .+..+..+++|++|++++|.+... ++ ..+..+++|++|++++|.+
T Consensus 293 -lp~~l-~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 293 -LPSGL-VGLSTLKKLVLSANKFENL----CQISASNFPSLTHLSIKGNTKRLE----LGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp -CCSSC-CSCTTCCEEECTTCCCSBG----GGGCGGGCTTCSEEECCSCSSCCB----CCSSTTTTCTTCCEEECCSSCC
T ss_pred -CChhh-cccccCCEEECccCCcCcC----chhhhhccCcCCEEECCCCCcccc----cchhhhhccCcCCEEECCCCcc
Confidence 33333 2445677777777777664 344556666666666666655421 11 1244556666666666666
Q ss_pred CHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcc
Q 006842 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (629)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 507 (629)
+.... .+..+..+++|++|++++|.+....... +..+++|++|++++|.++...+.. .+..+++|++|+++
T Consensus 363 ~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 363 ETSDC--CNLQLRNLSHLQSLNLSYNEPLSLKTEA----FKECPQLELLDLAFTRLKVKDAQS---PFQNLHLLKVLNLS 433 (606)
T ss_dssp CEEEE--STTTTTTCTTCCEEECCSCSCEEECTTT----TTTCTTCSEEECTTCCEECCTTCC---TTTTCTTCCEEECT
T ss_pred ccccC--cchhcccCCCCCEEECCCCcCCcCCHHH----hcCCccCCeEECCCCcCCCcccch---hhhCcccCCEEECC
Confidence 54210 0223445566666666666554332222 233455555555555543321111 11223555555555
Q ss_pred cCCCCccccccCCCc-------------h----hhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCC
Q 006842 508 ANGLRDEVCSGCNGL-------------S----FFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFN 570 (629)
Q Consensus 508 ~N~l~~~~~~~~~~l-------------~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N 570 (629)
+|.+.+..|..+..+ . ..+..+..+++|+.|++++|++++.. +..+.. .++|++|||++|
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~Ls~N 510 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID--QHAFTS-LKMMNHVDLSHN 510 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC--TTTTTT-CTTCCEEECCSS
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC--hhhhcc-ccCCCEEECCCC
Confidence 555544422111000 0 01234566666777777777666542 222322 266777777777
Q ss_pred CCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHHHHHHHH-hhhccceEE
Q 006842 571 EIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDL-VYEMSEKEV 625 (629)
Q Consensus 571 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~l-~~~l~~~~i 625 (629)
++++..+..+... .+| +|++++|.|++..+..+..+..+ ..++.+|.+
T Consensus 511 ~l~~~~~~~l~~l------~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 511 RLTSSSIEALSHL------KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCCGGGGGGGTTC------CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred ccCcCChhHhCcc------ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 7776666555443 356 77777777777666666665544 234444443
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.8e-38 Score=355.21 Aligned_cols=393 Identities=21% Similarity=0.193 Sum_probs=277.3
Q ss_pred HHHHHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhc-CCCcCEEEccCCCCCh
Q 006842 154 LNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQS-NIALKTLNLSGNPIGD 232 (629)
Q Consensus 154 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~ 232 (629)
+...+..+++|++|+|++|.+.... +. ..+++|++|++++|.++... +..+.. +++|++|+|++|.++.
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~----~~--~~l~~L~~L~L~~n~l~~~i----p~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPI----PP--LPLKSLQYLSLAENKFTGEI----PDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESC----CC--CCCTTCCEEECCSSEEEESC----CCCSCTTCTTCSEEECCSSEEEE
T ss_pred ccHHHhcCCCCCEEECCCCcccCcc----Cc--cccCCCCEEECcCCccCCcc----CHHHHhhcCcCCEEECcCCcCCC
Confidence 4456678899999999999875421 11 14567777777777654221 111112 3556666666665543
Q ss_pred hHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHH-HHHhcCCCccEEEeccCCCChhhHHHH-----------------
Q 006842 233 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIA-ELLKNNSILRVLELNNNMIDYSGFTSL----------------- 294 (629)
Q Consensus 233 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l----------------- 294 (629)
. ++..+..+++|++|++++|.++.. ++ ..+..+++|++|++++|.+++.....+
T Consensus 309 ~----~p~~~~~l~~L~~L~L~~n~l~~~----ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l 380 (768)
T 3rgz_A 309 A----VPPFFGSCSLLESLALSSNNFSGE----LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380 (768)
T ss_dssp C----CCGGGGGCTTCCEEECCSSEEEEE----CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred c----cchHHhcCCCccEEECCCCcccCc----CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCc
Confidence 2 233344556666666666655421 11 124445566666666665532111111
Q ss_pred ----HHHHhh--cCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccC
Q 006842 295 ----AEALLE--NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368 (629)
Q Consensus 295 ----~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 368 (629)
+..+.. +++|++|++++|.++.. ++..+..+++|++|++++|.+++.....+ ..+++|+.|++++
T Consensus 381 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 381 SGPILPNLCQNPKNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIPSSL-----GSLSKLRDLKLWL 451 (768)
T ss_dssp EEECCTTTTCSTTCCCCEEECCSSEEEEE----CCGGGGGCTTCCEEECCSSEEESCCCGGG-----GGCTTCCEEECCS
T ss_pred CCCcChhhhhcccCCccEEECCCCccccc----cCHHHhcCCCCCEEECcCCcccCcccHHH-----hcCCCCCEEECCC
Confidence 111111 44566677776665533 23567789999999999998875422222 3567899999999
Q ss_pred CCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEE
Q 006842 369 NSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448 (629)
Q Consensus 369 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L 448 (629)
|.++.. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++. ++..+..+++|++|
T Consensus 452 n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 452 NMLEGE----IPQELMYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAIL 519 (768)
T ss_dssp SCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEE
T ss_pred CcccCc----CCHHHcCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEE
Confidence 999976 677788999999999999999875 677788899999999999999865 56677888999999
Q ss_pred ECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHH-----------------------------------
Q 006842 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD----------------------------------- 493 (629)
Q Consensus 449 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~----------------------------------- 493 (629)
++++|++....+ ..+..+++|+.|++++|.++...+..+..
T Consensus 520 ~L~~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 520 KLSNNSFSGNIP----AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp ECCSSCCEEECC----GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred ECCCCcccCcCC----HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 999999975433 33466799999999999876332222211
Q ss_pred -------------------------------HHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhh
Q 006842 494 -------------------------------MLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCI 542 (629)
Q Consensus 494 -------------------------------~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~ 542 (629)
.+..+++|++|||++|++++. +|..+..+++|+.|+|++
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~----------ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY----------IPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC----------CCGGGGGCTTCCEEECCS
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc----------CCHHHhccccCCEEeCcC
Confidence 122346799999999999998 778899999999999999
Q ss_pred hcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHH
Q 006842 543 NYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQS 608 (629)
Q Consensus 543 N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~ 608 (629)
|+++|. +|..+..+ ++|++|||++|++++.+|..+..+ .+|++||+++|++++..|.
T Consensus 666 N~l~g~--ip~~l~~L-~~L~~LdLs~N~l~g~ip~~l~~l------~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 666 NDISGS--IPDEVGDL-RGLNILDLSSNKLDGRIPQAMSAL------TMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp SCCCSC--CCGGGGGC-TTCCEEECCSSCCEECCCGGGGGC------CCCSEEECCSSEEEEECCS
T ss_pred CccCCC--CChHHhCC-CCCCEEECCCCcccCcCChHHhCC------CCCCEEECcCCcccccCCC
Confidence 999986 45666555 899999999999999999888766 6799999999999987664
No 6
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=1.7e-31 Score=278.75 Aligned_cols=291 Identities=21% Similarity=0.246 Sum_probs=169.6
Q ss_pred EccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCC------hhHHHHHHHH
Q 006842 168 DMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG------DEGVKCLCDI 241 (629)
Q Consensus 168 ~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~------~~~~~~l~~~ 241 (629)
++..+.+++.++..++..+..+++|++|+|++|.|++.+...++..+..+++|++|+|++|.+. ..++..++..
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3444556666667677777777777777777777777777677666666777777777776443 2345555666
Q ss_pred HhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhc---------CCccEEeccCC
Q 006842 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN---------STIRSLHLNGN 312 (629)
Q Consensus 242 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~---------~~L~~L~L~~n 312 (629)
+..+++|++|+|++|.+++.+...++..+..+++|++|+|++|.|++.+...++..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 666666777777777766666666666666666677777777766655555555555555 56666666666
Q ss_pred CCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHH-hhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccE
Q 006842 313 YGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS-GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLW 391 (629)
Q Consensus 313 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~ 391 (629)
.++..+...++..+..+++|++|++++|.+++.++..+.. .+ ..+++|++|+|++|.+++.|...++..+..+++|++
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh-hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 6655555555555555556666666666665555544444 22 233455555555555555444445555555555555
Q ss_pred EEccCCCCChHHHHHHHHHHhc--CCCccEEEeeCCCCCHHHHHHHHHHh-hcCCcccEEECcCCCCChhH
Q 006842 392 INLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGNNIHSKGASAIARVL-KDNSVITSLDLAYNPIGADG 459 (629)
Q Consensus 392 L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~ 459 (629)
|+|++|.+++.+...++..+.. +++|++|+|++|.|+..++..++..+ .++++|++|++++|++++.+
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5555555555555555555433 45555555555555554444444444 33455555555555554443
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=1.2e-31 Score=279.90 Aligned_cols=300 Identities=21% Similarity=0.294 Sum_probs=216.0
Q ss_pred EEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCC------hHHHHHHHH
Q 006842 195 VSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR------DEGAKAIAE 268 (629)
Q Consensus 195 L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~------~~~~~~l~~ 268 (629)
..+..+.|++.++..+...+..+++|++|+|++|.|++.+...++..+..+++|++|+|++|.+. ..+...+..
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 34556677888888888888888888888888888888888888887888888888888887554 235666777
Q ss_pred HHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCC---------CCccEEEccC
Q 006842 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN---------KSLRELHLHG 339 (629)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~---------~~L~~L~Ls~ 339 (629)
.+..+++|++|+|++|.+++.+...++..+..+++|++|++++|.++..+...++..+..+ ++|++|++++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 7778888888888888888877777888888888888888888888777777777666665 6777777777
Q ss_pred CCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHH-HHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCcc
Q 006842 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTIT 418 (629)
Q Consensus 340 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~ 418 (629)
|.+++.++..+...+. .+++|++|++++|.+++.|+..+.. .+..+++|++|+|++|.+++.++..++..+..+++|+
T Consensus 169 n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SCCTGGGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCcHHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 7777666665555443 3346777777777777666655555 6667777777777777777666666776677777777
Q ss_pred EEEeeCCCCCHHHHHHHHHHhhc--CCcccEEECcCCCCChhHHHHHHHHH-hcCCCccEEeccCCCCCHHH--HHHHHH
Q 006842 419 TIDLGGNNIHSKGASAIARVLKD--NSVITSLDLAYNPIGADGAKALSEVL-KFHGNINTLKLGWCQIGASG--AEFVAD 493 (629)
Q Consensus 419 ~L~Ls~n~i~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~--~~~l~~ 493 (629)
+|+|++|.|++.+...++..+.. +++|++|+|++|.|++.+...+...+ .++++|++|++++|.++..+ ...+..
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 327 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence 77777777777666666666644 67777777777777766666666555 44567777777777766655 344544
Q ss_pred HH
Q 006842 494 ML 495 (629)
Q Consensus 494 ~l 495 (629)
.+
T Consensus 328 ~l 329 (386)
T 2ca6_A 328 VF 329 (386)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-36 Score=334.82 Aligned_cols=394 Identities=17% Similarity=0.150 Sum_probs=240.8
Q ss_pred HHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHH
Q 006842 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (629)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 236 (629)
.+..+++|++|++++|.++... +..+..+++|++|++++|.++......+ ..+++|++|++++|.++....
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~- 170 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSID----FIPLHNQKTLESLYLGSNHISSIKLPKG----FPTEKLKVLDFQNNAIHYLSK- 170 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGG----GSCCTTCTTCCEEECCSSCCCCCCCCTT----CCCTTCCEEECCSSCCCEECH-
T ss_pred hhcccccccEeeccccCcccCC----cchhccCCcccEEECCCCcccccCcccc----cCCcccCEEEcccCcccccCh-
Confidence 3557899999999999998743 3446778999999999999876433322 237889999999999987643
Q ss_pred HHHHHHhhCCCCC--EEEeeccCCChHHHHHHH----------------HHHhcC-------------------------
Q 006842 237 CLCDILVDNAGVE--RLQLSSVDLRDEGAKAIA----------------ELLKNN------------------------- 273 (629)
Q Consensus 237 ~l~~~l~~~~~L~--~L~L~~n~l~~~~~~~l~----------------~~l~~~------------------------- 273 (629)
..+..+++|+ +|++++|.++......+. ..+..+
T Consensus 171 ---~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 171 ---EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp ---HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred ---hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhH
Confidence 4455568999 899999998764322111 000000
Q ss_pred ------CCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHH
Q 006842 274 ------SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGI 347 (629)
Q Consensus 274 ------~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 347 (629)
.+|++|++++|.+++.. +..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++....
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~lp-----~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNIS----SNTFHCFSGLQELDLTATHLSELP-----SGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCC----TTTTTTCTTCSEEECTTSCCSCCC-----SSCCSCTTCCEEECTTCCCSBGGG
T ss_pred hchhhcCceeEEEeecCccCccC----HHHhccccCCCEEeccCCccCCCC-----hhhcccccCCEEECccCCcCcCch
Confidence 03444555555443221 122334455555555555544332 223444555555555554443211
Q ss_pred HHH--------------------HHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHH
Q 006842 348 RAL--------------------MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (629)
Q Consensus 348 ~~l--------------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 407 (629)
..+ .......+++|++|++++|.++.... .+..+..+++|++|++++|.+.+. .
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~----~ 392 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNEPLSL----K 392 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCSCEEE----C
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCcCCcC----C
Confidence 111 11111234456666666665554310 023345566666666666665543 3
Q ss_pred HHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHH
Q 006842 408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487 (629)
Q Consensus 408 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 487 (629)
+..+..+++|++|++++|.++... ....+..+++|++|++++|.+....... +..+++|++|++++|.+++..
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKD---AQSPFQNLHLLKVLNLSHSLLDISSEQL----FDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCT---TCCTTTTCTTCCEEECTTCCCBTTCTTT----TTTCTTCCEEECTTCBCGGGE
T ss_pred HHHhcCCccCCeEECCCCcCCCcc---cchhhhCcccCCEEECCCCccCCcCHHH----HhCCCCCCEEECCCCCCCccc
Confidence 344555666666666666655321 0112445566777777777665443222 234567777777777765421
Q ss_pred HHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeec
Q 006842 488 AEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDL 567 (629)
Q Consensus 488 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdL 567 (629)
... ...+..+++|++|++++|++++. .+..|..+++|+.|++++|++++.. +..+... +.| +||+
T Consensus 466 ~~~-~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l-~~L-~L~L 530 (606)
T 3t6q_A 466 IQK-TNSLQTLGRLEILVLSFCDLSSI----------DQHAFTSLKMMNHVDLSHNRLTSSS--IEALSHL-KGI-YLNL 530 (606)
T ss_dssp ECS-SCGGGGCTTCCEEECTTSCCCEE----------CTTTTTTCTTCCEEECCSSCCCGGG--GGGGTTC-CSC-EEEC
T ss_pred ccc-chhhccCCCccEEECCCCccCcc----------ChhhhccccCCCEEECCCCccCcCC--hhHhCcc-ccc-EEEC
Confidence 100 01233457777777777777766 5678889999999999999999863 4445443 788 9999
Q ss_pred CCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchh
Q 006842 568 AFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 605 (629)
Q Consensus 568 s~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~ 605 (629)
++|++++..+..+... ++|+.|++++|+++..
T Consensus 531 ~~N~l~~~~~~~~~~l------~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 531 ASNHISIILPSLLPIL------SQQRTINLRQNPLDCT 562 (606)
T ss_dssp CSSCCCCCCGGGHHHH------HTSSEEECTTCCEECS
T ss_pred cCCcccccCHhhcccC------CCCCEEeCCCCCcccc
Confidence 9999999888777766 4799999999999863
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.2e-31 Score=296.45 Aligned_cols=413 Identities=15% Similarity=0.134 Sum_probs=296.1
Q ss_pred HHHHHHHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCC-CCHHHHHHHHHHhhcCCCcCEEEccCCCC
Q 006842 152 QTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGNPI 230 (629)
Q Consensus 152 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 230 (629)
..+..+...+++|++|+|++|.+++..+..++..+. .+|++|+|++|. +++.++. .....+++|++|+|++|.+
T Consensus 102 ~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~L~~~~~ 176 (592)
T 3ogk_B 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETLKLDKCSGFTTDGLL---SIVTHCRKIKTLLMEESSF 176 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEEEEESCEEEEHHHHH---HHHHHCTTCSEEECTTCEE
T ss_pred HHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEEECcCCCCcCHHHHH---HHHhhCCCCCEEECccccc
Confidence 456667778999999999999998888777766532 249999999887 5555444 3445678899999999988
Q ss_pred ChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEecc
Q 006842 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310 (629)
Q Consensus 231 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 310 (629)
++.+...+...+..+++|++|++++|.++......+...+..+++|++|++++|.+.. ++..+..+++|++|+++
T Consensus 177 ~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEEC
T ss_pred cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhccc
Confidence 7766666667777789999999999998855556677778888999999999988743 45667788999999998
Q ss_pred CCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCcc
Q 006842 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390 (629)
Q Consensus 311 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~ 390 (629)
.+..... .......+..+++|+.|+++++.... +.. +...+++|++|++++|.+++.+ +...+..+++|+
T Consensus 252 ~~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~-----l~~-~~~~~~~L~~L~Ls~~~l~~~~---~~~~~~~~~~L~ 321 (592)
T 3ogk_B 252 SLNEDIG-MPEKYMNLVFPRKLCRLGLSYMGPNE-----MPI-LFPFAAQIRKLDLLYALLETED---HCTLIQKCPNLE 321 (592)
T ss_dssp BCCCCTT-CTTSSSCCCCCTTCCEEEETTCCTTT-----GGG-GGGGGGGCCEEEETTCCCCHHH---HHHHHTTCTTCC
T ss_pred ccccccc-hHHHHHHhhccccccccCccccchhH-----HHH-HHhhcCCCcEEecCCCcCCHHH---HHHHHHhCcCCC
Confidence 5432110 01112345667888888888754332 121 2234568999999999987764 334568899999
Q ss_pred EEEccCCCCChHHHHHHHHHHhcCCCccEEEee-----------CCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhH
Q 006842 391 WINLYMNDIGDEGAEKIADALKQNRTITTIDLG-----------GNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (629)
Q Consensus 391 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls-----------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (629)
+|+++ +.+++.++..+ ...+++|++|+++ .+.+++.+...+. ..+++|++|+++.|.+++.+
T Consensus 322 ~L~L~-~~~~~~~l~~~---~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 322 VLETR-NVIGDRGLEVL---AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA---QGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp EEEEE-GGGHHHHHHHH---HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH---HHCTTCSEEEEEESCCCHHH
T ss_pred EEecc-CccCHHHHHHH---HHhCCCCCEEEeecCccccccccccCccCHHHHHHHH---hhCccCeEEEeecCCccHHH
Confidence 99998 66666654444 3457889999999 4688887655543 34789999999999999887
Q ss_pred HHHHHHHHhcCCCccEEecc----CCCCCHHHH-HHHHHHHhcCCCcCEEEcccC--CCCccccccCCCchhhhHHHH-h
Q 006842 460 AKALSEVLKFHGNINTLKLG----WCQIGASGA-EFVADMLRYNNTISILDLRAN--GLRDEVCSGCNGLSFFHSAIY-S 531 (629)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~L~----~n~i~~~~~-~~l~~~l~~~~~L~~L~Ls~N--~l~~~~~~~~~~l~~~~~~~~-~ 531 (629)
...+.. .+++|++|+++ .|.+++... ..+...+..+++|++|++++| .+++. ....+. .
T Consensus 395 ~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~----------~~~~~~~~ 461 (592)
T 3ogk_B 395 LESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL----------GLSYIGQY 461 (592)
T ss_dssp HHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH----------HHHHHHHS
T ss_pred HHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH----------HHHHHHHh
Confidence 776654 35789999996 566775311 123333455799999999754 36665 334444 4
Q ss_pred hhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHHH
Q 006842 532 LKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALT 611 (629)
Q Consensus 532 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~ 611 (629)
+++|++|++++|++++.. ++..+. .+++|++|+|++|.|++.+...+...+ ++|++|+|++|++++.+...+.
T Consensus 462 ~~~L~~L~L~~n~l~~~~-~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEG-LMEFSR-GCPNLQKLEMRGCCFSERAIAAAVTKL-----PSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp CTTCCEEEECSCCSSHHH-HHHHHT-CCTTCCEEEEESCCCBHHHHHHHHHHC-----SSCCEEEEESCBCCTTCTTGGG
T ss_pred CccceEeeccCCCCCHHH-HHHHHh-cCcccCeeeccCCCCcHHHHHHHHHhc-----CccCeeECcCCcCCHHHHHHHH
Confidence 888999999999987632 233233 238899999999999887666665543 3799999999999988765554
No 10
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=6.5e-30 Score=282.65 Aligned_cols=410 Identities=16% Similarity=0.165 Sum_probs=299.3
Q ss_pred HHHHHHHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccC-CCCHHHHHHHHHHhhcCCCcCEEEccCCCC
Q 006842 152 QTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAAN-GITAAGIKAFDGVLQSNIALKTLNLSGNPI 230 (629)
Q Consensus 152 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 230 (629)
..+..+...+++|++|+|++|.+++..+..+... +++|++|+|++| .+++.++..+ ...+++|++|+|++|.+
T Consensus 95 ~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i 168 (594)
T 2p1m_B 95 PWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS---FKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDV 168 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH---CTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEE
T ss_pred HHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHh---CCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCcc
Confidence 3456667789999999999999999887666533 689999999999 5776655544 34678899999999988
Q ss_pred ChhHHHHHHHHHhhCCCCCEEEeeccC--CChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEe
Q 006842 231 GDEGVKCLCDILVDNAGVERLQLSSVD--LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLH 308 (629)
Q Consensus 231 ~~~~~~~l~~~l~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 308 (629)
++.+...+......+++|++|++++|. ++. ..+......+++|++|++++|.- ...++..+..+++|++|+
T Consensus 169 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~l~~l~~~~~~L~~L~L~~~~~----~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 169 DDVSGHWLSHFPDTYTSLVSLNISCLASEVSF---SALERLVTRCPNLKSLKLNRAVP----LEKLATLLQRAPQLEELG 241 (594)
T ss_dssp ECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH---HHHHHHHHHCTTCCEEECCTTSC----HHHHHHHHHHCTTCSEEE
T ss_pred CCcchHHHHHHhhcCCcCcEEEecccCCcCCH---HHHHHHHHhCCCCcEEecCCCCc----HHHHHHHHhcCCcceEcc
Confidence 776655555555567899999999996 544 34555556689999999999832 134677788899999999
Q ss_pred ccCCC--CChhhHHHHHHHhcCCCCccEE-EccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHc
Q 006842 309 LNGNY--GGALGANALAKGLEGNKSLREL-HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385 (629)
Q Consensus 309 L~~n~--i~~~~~~~l~~~l~~~~~L~~L-~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 385 (629)
++.+. +.......+...+.++++|+.| .+.+. ....+..+.. .+++|++|++++|.+++.+ +...+..
T Consensus 242 l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~--~~~~l~~~~~----~~~~L~~L~L~~~~l~~~~---l~~~~~~ 312 (594)
T 2p1m_B 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA--VPAYLPAVYS----VCSRLTTLNLSYATVQSYD---LVKLLCQ 312 (594)
T ss_dssp CSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC--CGGGGGGGHH----HHTTCCEEECTTCCCCHHH---HHHHHTT
T ss_pred cccccCccchhhHHHHHHHHhcCCCcccccCCccc--chhhHHHHHH----hhCCCCEEEccCCCCCHHH---HHHHHhc
Confidence 88775 5555566667788899999998 44432 2332322322 3457999999999988764 3445678
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEe---------eCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCC
Q 006842 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDL---------GGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L---------s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
+++|++|++++| +++.++..+. ..+++|++|++ ..+.+++.+...+.. .+++|++|+++.|.++
T Consensus 313 ~~~L~~L~l~~~-~~~~~l~~l~---~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~---~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 313 CPKLQRLWVLDY-IEDAGLEVLA---STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM---GCPKLESVLYFCRQMT 385 (594)
T ss_dssp CTTCCEEEEEGG-GHHHHHHHHH---HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH---HCTTCCEEEEEESCCC
T ss_pred CCCcCEEeCcCc-cCHHHHHHHH---HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH---hchhHHHHHHhcCCcC
Confidence 899999999988 6665544443 34789999999 345788877666544 3689999999999999
Q ss_pred hhHHHHHHHHHhcCCCccEEecc--C----CCCCHHH-HHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHH
Q 006842 457 ADGAKALSEVLKFHGNINTLKLG--W----CQIGASG-AEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAI 529 (629)
Q Consensus 457 ~~~~~~l~~~l~~~~~L~~L~L~--~----n~i~~~~-~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~ 529 (629)
+.+...+.. .+++|++|+++ + +.++... ...+...+..+++|++|+|++ .+++. ....+
T Consensus 386 ~~~~~~l~~---~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~----------~~~~l 451 (594)
T 2p1m_B 386 NAALITIAR---NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK----------VFEYI 451 (594)
T ss_dssp HHHHHHHHH---HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH----------HHHHH
T ss_pred HHHHHHHHh---hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH----------HHHHH
Confidence 887766653 35899999998 4 5576211 122333455679999999977 77766 44455
Q ss_pred Hh-hhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHH
Q 006842 530 YS-LKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQS 608 (629)
Q Consensus 530 ~~-l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~ 608 (629)
.. +++|+.|++++|.+++.. ...+...+++|++|+|++|.+++.++..+...+ ++|++|++++|+++..+..
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~--~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~ 524 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLG--MHHVLSGCDSLRKLEIRDCPFGDKALLANASKL-----ETMRSLWMSSCSVSFGACK 524 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHH--HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG-----GGSSEEEEESSCCBHHHHH
T ss_pred HHhchhccEeeccCCCCcHHH--HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC-----CCCCEEeeeCCCCCHHHHH
Confidence 54 889999999999987542 222212248899999999999877666555433 3799999999999888777
Q ss_pred HHH
Q 006842 609 ALT 611 (629)
Q Consensus 609 ~l~ 611 (629)
.+.
T Consensus 525 ~l~ 527 (594)
T 2p1m_B 525 LLG 527 (594)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.7e-33 Score=306.68 Aligned_cols=183 Identities=17% Similarity=0.148 Sum_probs=104.1
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHH
Q 006842 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (629)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (629)
.+++|++|++++|.+++..... ...+..+++|++|++++|+++.... ....+..+++|++|++++|+++.. .
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~l~~L~~L~Ls~N~l~~l-----p 403 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQK--TGEILLTLKNLTSLDISRNTFHPM-----P 403 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHH--HHHHGGGCTTCCEEECTTCCCCCC-----C
T ss_pred cCccccEEEccCCccccccccc-hhhhhccccCcEEEccCCccccccc--chhhhhcCCCCCEEECCCCCCccC-----C
Confidence 4555555555555555431100 1113344555555555555554211 112344455555555555555421 1
Q ss_pred HHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhc
Q 006842 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINY 544 (629)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~ 544 (629)
..+..+++|++|++++|.++...... .++|++|++++|++++. ...+++|++|++++|+
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~~l~~~~-------~~~L~~L~Ls~N~l~~~--------------~~~l~~L~~L~Ls~N~ 462 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIRVVKTCI-------PQTLEVLDVSNNNLDSF--------------SLFLPRLQELYISRNK 462 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCSCCCTTS-------CTTCSEEECCSSCCSCC--------------CCCCTTCCEEECCSSC
T ss_pred hhhcccccccEEECCCCCcccccchh-------cCCceEEECCCCChhhh--------------cccCChhcEEECCCCc
Confidence 12233445555555555554321100 13555666666655544 1467899999999999
Q ss_pred chhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHH
Q 006842 545 LQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 607 (629)
Q Consensus 545 l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~ 607 (629)
++.+.. . . ..++|++|||++|++++..+..+... .+|++|++++|++++.-+
T Consensus 463 l~~ip~---~-~-~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 463 LKTLPD---A-S-LFPVLLVMKISRNQLKSVPDGIFDRL------TSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCC---G-G-GCTTCCEEECCSSCCCCCCTTGGGGC------TTCCEEECCSSCBCCCHH
T ss_pred cCcCCC---c-c-cCccCCEEecCCCccCCcCHHHHhcC------cccCEEEecCCCccCCCc
Confidence 986432 1 1 23889999999999999777666554 579999999999987654
No 12
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=4.1e-30 Score=284.12 Aligned_cols=415 Identities=12% Similarity=0.119 Sum_probs=307.9
Q ss_pred HHHHHhcCCccEEEccCCCC-----------CHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEE
Q 006842 155 NEFAKELRAFSSVDMSGRNF-----------GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223 (629)
Q Consensus 155 ~~~~~~~~~L~~L~Ls~~~l-----------~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L 223 (629)
..+++.+++|++|+|++|.. .......+......+++|++|+|++|.+++.....+...+. .+|++|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L 143 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETL 143 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEE
Confidence 45777899999999987532 11111234444556899999999999999988888776533 249999
Q ss_pred EccCCC-CChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcC
Q 006842 224 NLSGNP-IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS 302 (629)
Q Consensus 224 ~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 302 (629)
+|++|. +++.+ +......+++|++|+|++|.+++.+...+......+++|++|++++|.++......+...+..++
T Consensus 144 ~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 144 KLDKCSGFTTDG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220 (592)
T ss_dssp EEESCEEEEHHH---HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred ECcCCCCcCHHH---HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence 999986 55544 44445568999999999999987776667777888999999999999997555567777788899
Q ss_pred CccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHH
Q 006842 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382 (629)
Q Consensus 303 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 382 (629)
+|++|++++|.+.... ..+..+++|++|+++....... .......+ ..+++|+.|+++++.... ++..
T Consensus 221 ~L~~L~L~~~~~~~l~-----~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l-~~~~~L~~L~l~~~~~~~-----l~~~ 288 (592)
T 3ogk_B 221 SLVSVKVGDFEILELV-----GFFKAAANLEEFCGGSLNEDIG-MPEKYMNL-VFPRKLCRLGLSYMGPNE-----MPIL 288 (592)
T ss_dssp TCCEEECSSCBGGGGH-----HHHHHCTTCCEEEECBCCCCTT-CTTSSSCC-CCCTTCCEEEETTCCTTT-----GGGG
T ss_pred CCcEEeccCccHHHHH-----HHHhhhhHHHhhcccccccccc-hHHHHHHh-hccccccccCccccchhH-----HHHH
Confidence 9999999999876643 4566789999999986432210 00011112 345689999999865444 5666
Q ss_pred HHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECc-----------
Q 006842 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA----------- 451 (629)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls----------- 451 (629)
+..+++|++|++++|.+++.+. ...+..+++|++|+++ +.+++.+...+ ...+++|++|+++
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~---~~~~~~~~~L~~L~L~-~~~~~~~l~~~---~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDH---CTLIQKCPNLEVLETR-NVIGDRGLEVL---AQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHH---HHHHTTCTTCCEEEEE-GGGHHHHHHHH---HHHCTTCCEEEEECCCCSSTTSST
T ss_pred HhhcCCCcEEecCCCcCCHHHH---HHHHHhCcCCCEEecc-CccCHHHHHHH---HHhCCCCCEEEeecCccccccccc
Confidence 7889999999999999888753 3446789999999999 66766655444 4457999999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcc----cCCCCccccccCCCchhhhH
Q 006842 452 YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR----ANGLRDEVCSGCNGLSFFHS 527 (629)
Q Consensus 452 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls----~N~l~~~~~~~~~~l~~~~~ 527 (629)
.|.+++.+...+. ..+++|++|++..|.+++.+...+... +++|++|+++ .|.+++... -...+.
T Consensus 362 ~~~~~~~~~~~l~---~~~~~L~~L~l~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~~n~l~~~p~-----~~~~~~ 430 (592)
T 3ogk_B 362 EGLVSQRGLIALA---QGCQELEYMAVYVSDITNESLESIGTY---LKNLCDFRLVLLDREERITDLPL-----DNGVRS 430 (592)
T ss_dssp TCCCCHHHHHHHH---HHCTTCSEEEEEESCCCHHHHHHHHHH---CCSCCEEEEEECSCCSCCSSCCC-----HHHHHH
T ss_pred cCccCHHHHHHHH---hhCccCeEEEeecCCccHHHHHHHHhh---CCCCcEEEEeecCCCccccCchH-----HHHHHH
Confidence 5788888766654 446899999999999999887777653 5999999997 567765300 012455
Q ss_pred HHHhhhhhhhhhhhhh--cchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchh
Q 006842 528 AIYSLKHMLFYSLCIN--YLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 605 (629)
Q Consensus 528 ~~~~l~~L~~L~Ls~N--~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~ 605 (629)
.+.++++|+.|+++++ .+++.. ...+...+++|++|+|++|.+++.+...+... + ++|++|+|++|.|++.
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~---~--~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLG--LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG---C--PNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHH--HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC---C--TTCCEEEEESCCCBHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHH--HHHHHHhCccceEeeccCCCCCHHHHHHHHhc---C--cccCeeeccCCCCcHH
Confidence 6788999999999743 355432 22233334889999999999998666555433 2 3799999999999987
Q ss_pred HHHHHH
Q 006842 606 GQSALT 611 (629)
Q Consensus 606 ~~~~l~ 611 (629)
+...+.
T Consensus 504 ~~~~~~ 509 (592)
T 3ogk_B 504 AIAAAV 509 (592)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=7.1e-35 Score=323.42 Aligned_cols=361 Identities=13% Similarity=0.150 Sum_probs=200.2
Q ss_pred HHhccCCCccEEEeccCCCCHH-------------HHHHHHHHhh--cCCCcCEEEccCCCCChhHHHHHHHHHhhCCCC
Q 006842 184 ESLGYNQTAEEVSFAANGITAA-------------GIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGV 248 (629)
Q Consensus 184 ~~l~~~~~L~~L~Ls~n~i~~~-------------~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L 248 (629)
..+..+++|++|+|++|.++.. ....++..+. ++++|++|+|++|.+... ++..+..+++|
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L 275 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK----LPTFLKALPEM 275 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS----CCTTTTTCSSC
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc----ChHHHhcCCCC
Confidence 3455556666666666666541 0111333334 556666666666655432 33444455666
Q ss_pred CEEEeeccC-CCh-HHHHHHHHHHhc------CCCccEEEeccCCCChhhHHHHHH--HHhhcCCccEEeccCCCCC-hh
Q 006842 249 ERLQLSSVD-LRD-EGAKAIAELLKN------NSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGNYGG-AL 317 (629)
Q Consensus 249 ~~L~L~~n~-l~~-~~~~~l~~~l~~------~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~L~~n~i~-~~ 317 (629)
++|++++|+ ++. . ++..+.. +++|++|++++|.++ .++. .+..+++|++|++++|.++ .+
T Consensus 276 ~~L~Ls~n~~l~~~~----lp~~~~~L~~~~~l~~L~~L~L~~n~l~-----~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 276 QLINVACNRGISGEQ----LKDDWQALADAPVGEKIQIIYIGYNNLK-----TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp CEEECTTCTTSCHHH----HHHHHHHHHHSGGGGTCCEEECCSSCCS-----SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred CEEECcCCCCCcccc----chHHHHhhhccccCCCCCEEECCCCcCC-----ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 666666665 554 2 2222222 255666666666664 1233 4555666666666666655 33
Q ss_pred hHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCC-ceEEEccCCCCCchhHHHHHHHHHcCC--CccEEEc
Q 006842 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGK-LAVLDIGNNSISAKGAFHVAEYIKNCK--SLLWINL 394 (629)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~~--~L~~L~L 394 (629)
+ .+..+++|++|++++|.++. ++..+. .+++ |++|++++|.++. ++..+..+. +|++|++
T Consensus 347 p------~~~~l~~L~~L~L~~N~l~~-----lp~~l~-~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~L 409 (636)
T 4eco_A 347 P------AFGSEIKLASLNLAYNQITE-----IPANFC-GFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDF 409 (636)
T ss_dssp C------CCEEEEEESEEECCSSEEEE-----CCTTSE-EECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEEC
T ss_pred h------hhCCCCCCCEEECCCCcccc-----ccHhhh-hhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEEC
Confidence 2 34455666666666665552 222222 3334 6666676666664 344333332 6667777
Q ss_pred cCCCCChHHHHHHHHHHh-------cCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHH-
Q 006842 395 YMNDIGDEGAEKIADALK-------QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV- 466 (629)
Q Consensus 395 s~n~l~~~~~~~l~~~l~-------~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~- 466 (629)
++|.++.. ++..+. .+++|++|++++|.++.... ..+..+++|++|+|++|.++......+...
T Consensus 410 s~N~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 410 SYNEIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQISKFPK----ELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp CSSCTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT----HHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred cCCcCCCc----chhhhcccccccccCCCCCEEECcCCccCcCCH----HHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 77666554 333333 44567777777776664211 223335667777777776663322111100
Q ss_pred --HhcCCCccEEeccCCCCCHHHHHHHHHHHh--cCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhh-
Q 006842 467 --LKFHGNINTLKLGWCQIGASGAEFVADMLR--YNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLC- 541 (629)
Q Consensus 467 --l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls- 541 (629)
++++++|++|+|++|.++... ..+. .+++|++|+|++|++++. |..+..+++|+.|+++
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~~lp-----~~~~~~~l~~L~~L~Ls~N~l~~i-----------p~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLTKLS-----DDFRATTLPYLVGIDLSYNSFSKF-----------PTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp EECTTGGGCCEEECCSSCCCBCC-----GGGSTTTCTTCCEEECCSSCCSSC-----------CCGGGGCSSCCEEECCS
T ss_pred ccccccCCccEEECcCCcCCccC-----hhhhhccCCCcCEEECCCCCCCCc-----------ChhhhcCCCCCEEECCC
Confidence 011126777777777776322 1222 347777777777777653 5567778888888884
Q ss_pred -----hhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHH
Q 006842 542 -----INYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 610 (629)
Q Consensus 542 -----~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l 610 (629)
+|++.+. ++..+... ++|++|||++|+|+. +|..+. ++|++|+|++|++..++...+
T Consensus 546 N~~ls~N~l~~~--~p~~l~~l-~~L~~L~Ls~N~l~~-ip~~~~--------~~L~~L~Ls~N~l~~~~~~~~ 607 (636)
T 4eco_A 546 QRDAQGNRTLRE--WPEGITLC-PSLTQLQIGSNDIRK-VNEKIT--------PNISVLDIKDNPNISIDLSYV 607 (636)
T ss_dssp CBCTTCCBCCCC--CCTTGGGC-SSCCEEECCSSCCCB-CCSCCC--------TTCCEEECCSCTTCEEECTTT
T ss_pred CcccccCccccc--ChHHHhcC-CCCCEEECCCCcCCc-cCHhHh--------CcCCEEECcCCCCccccHHhc
Confidence 4555554 34444433 788888888888855 444432 368888888887776654433
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=5.7e-32 Score=289.55 Aligned_cols=348 Identities=22% Similarity=0.230 Sum_probs=270.9
Q ss_pred hcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHH
Q 006842 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (629)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (629)
.++++++|+++++.+... + .+..+++|++|+|++|.+++... +..+++|++|++++|.+....
T Consensus 44 ~l~~l~~L~l~~~~i~~l-----~-~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~----- 106 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-----D-GVEYLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADIT----- 106 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCG-----
T ss_pred HhccccEEecCCCCCccC-----c-chhhhcCCCEEECCCCccCCchh------hhccccCCEEECCCCccccCh-----
Confidence 356789999999988763 2 36778999999999999876532 567888999999999887653
Q ss_pred HHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhH
Q 006842 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (629)
Q Consensus 240 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (629)
. +..+++|++|++++|.+++... +..+++|++|++++|.+.+.. .+..+++|++|++++ .+....
T Consensus 107 ~-~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~-~~~~~~- 171 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGN-QVTDLK- 171 (466)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEE-SCCCCG-
T ss_pred h-hcCCCCCCEEECCCCCCCCChH------HcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCC-cccCch-
Confidence 2 6678999999999999887532 667889999999999886532 366788999999964 444332
Q ss_pred HHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCC
Q 006842 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (629)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (629)
.+..+++|++|++++|.+++.. .+ ..+++|++|++++|.++.. .+ +..+++|++|++++|.+
T Consensus 172 -----~~~~l~~L~~L~l~~n~l~~~~------~l-~~l~~L~~L~l~~n~l~~~----~~--~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 172 -----PLANLTTLERLDISSNKVSDIS------VL-AKLTNLESLIATNNQISDI----TP--LGILTNLDELSLNGNQL 233 (466)
T ss_dssp -----GGTTCTTCCEEECCSSCCCCCG------GG-GGCTTCSEEECCSSCCCCC----GG--GGGCTTCCEEECCSSCC
T ss_pred -----hhccCCCCCEEECcCCcCCCCh------hh-ccCCCCCEEEecCCccccc----cc--ccccCCCCEEECCCCCc
Confidence 2678899999999999887742 12 3566899999999998875 22 67789999999999988
Q ss_pred ChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEecc
Q 006842 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (629)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (629)
++. ..+..+++|++|++++|.++.... +..+++|++|++++|.++.... +..+++|++|+++
T Consensus 234 ~~~------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 234 KDI------GTLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISP------LAGLTALTNLELN 295 (466)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECC
T ss_pred ccc------hhhhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcC
Confidence 874 346778999999999999887421 6778999999999999886543 4567899999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhh
Q 006842 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVN 559 (629)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~ 559 (629)
+|.++...+ +..+++|++|++++|++.+. .+ +..+++|+.|++++|++++.. .+.. +
T Consensus 296 ~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~----------~~--~~~l~~L~~L~l~~n~l~~~~----~l~~-l 352 (466)
T 1o6v_A 296 ENQLEDISP------ISNLKNLTYLTLYFNNISDI----------SP--VSSLTKLQRLFFYNNKVSDVS----SLAN-L 352 (466)
T ss_dssp SSCCSCCGG------GGGCTTCSEEECCSSCCSCC----------GG--GGGCTTCCEEECCSSCCCCCG----GGTT-C
T ss_pred CCcccCchh------hcCCCCCCEEECcCCcCCCc----------hh--hccCccCCEeECCCCccCCch----hhcc-C
Confidence 999877543 45669999999999999877 22 678899999999999998862 2332 3
Q ss_pred cccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhH
Q 006842 560 EALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 606 (629)
Q Consensus 560 ~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~ 606 (629)
++|++|++++|++++..| +... ++|++|++++|.+++.+
T Consensus 353 ~~L~~L~l~~n~l~~~~~--~~~l------~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 353 TNINWLSAGHNQISDLTP--LANL------TRITQLGLNDQAWTNAP 391 (466)
T ss_dssp TTCCEEECCSSCCCBCGG--GTTC------TTCCEEECCCEEEECCC
T ss_pred CCCCEEeCCCCccCccch--hhcC------CCCCEEeccCCcccCCc
Confidence 889999999999998766 3322 47999999999988743
No 15
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=1.6e-30 Score=268.82 Aligned_cols=296 Identities=19% Similarity=0.221 Sum_probs=204.9
Q ss_pred EEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCC-CcCEEEccCCCCChhHHHHHHHHHhhC
Q 006842 167 VDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLNLSGNPIGDEGVKCLCDILVDN 245 (629)
Q Consensus 167 L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 245 (629)
++++.|.++.. +++.+...++|++|+|++|.|++.+...+...+..++ +|++|+|++|.|++.+...++..+...
T Consensus 3 ~~ls~n~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNP----VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCH----HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHH----HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 46677776654 3444455556777777777777777777777777666 777777777777777666677766665
Q ss_pred -CCCCEEEeeccCCChHHHHHHHHHHhcC-CCccEEEeccCCCChhhHHHHHHHHhh-cCCccEEeccCCCCChhhHHHH
Q 006842 246 -AGVERLQLSSVDLRDEGAKAIAELLKNN-SILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANAL 322 (629)
Q Consensus 246 -~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l 322 (629)
++|++|+|++|.+++.+...+...+..+ ++|++|+|++|.|++.+...+...+.. +++|++|++++|.+++.+...+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 7777777777777777777777777666 677777777777777776666666666 3577777777777777777677
Q ss_pred HHHhcCCC-CccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcC-CCccEEEccCCCCC
Q 006842 323 AKGLEGNK-SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC-KSLLWINLYMNDIG 400 (629)
Q Consensus 323 ~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~ 400 (629)
+..+..++ +|++|+|++|.+++.+...+...+....++|++|+|++|.+++.++..++..+... ++|++|++++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 66666665 77777777777776666666665553334677777777777777766677666663 47777777777777
Q ss_pred hHHHHHHHHHHhcCCCccEEEeeCCC---CCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHH
Q 006842 401 DEGAEKIADALKQNRTITTIDLGGNN---IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV 466 (629)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 466 (629)
+.+...+...+..+++|++|++++|. ++..+...+...+..+++|++||+++|.+.+.....+...
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~ 307 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL 307 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHH
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHH
Confidence 76666666666667777777777776 6666666666666666777777777777766654444444
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=7e-35 Score=323.48 Aligned_cols=340 Identities=15% Similarity=0.162 Sum_probs=193.8
Q ss_pred HHhhcCCCcCEEEccCCCCChh-------------HHHHHHHHHh--hCCCCCEEEeeccCCChHHHHHHHHHHhcCCCc
Q 006842 212 GVLQSNIALKTLNLSGNPIGDE-------------GVKCLCDILV--DNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL 276 (629)
Q Consensus 212 ~~l~~~~~L~~L~Ls~n~i~~~-------------~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 276 (629)
..+.++++|++|+|++|.++.. ....++..+. .+++|++|+|++|.+... ++..+.++++|
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L 275 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK----LPTFLKALPEM 275 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS----CCTTTTTCSSC
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc----ChHHHhcCCCC
Confidence 3455666677777777776651 0111334444 566777777777766543 44455566677
Q ss_pred cEEEeccCC-CChhhHHHHHHHHhhc------CCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHH
Q 006842 277 RVLELNNNM-IDYSGFTSLAEALLEN------STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (629)
Q Consensus 277 ~~L~L~~n~-i~~~~~~~l~~~l~~~------~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 349 (629)
++|++++|+ ++. ..++..+..+ ++|++|++++|.++.++.. ..+..+++|++|++++|.+++.
T Consensus 276 ~~L~Ls~n~~l~~---~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~---~~l~~l~~L~~L~L~~N~l~g~---- 345 (636)
T 4eco_A 276 QLINVACNRGISG---EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE---TSLQKMKKLGMLECLYNQLEGK---- 345 (636)
T ss_dssp CEEECTTCTTSCH---HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH---HHHTTCTTCCEEECCSCCCEEE----
T ss_pred CEEECcCCCCCcc---ccchHHHHhhhccccCCCCCEEECCCCcCCccCch---hhhccCCCCCEEeCcCCcCccc----
Confidence 777777776 652 1344444443 6777777777776643310 1455667777777777766522
Q ss_pred HHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCC-ccEEEccCCCCChHHHHHHHHHHhcCC--CccEEEeeCCC
Q 006842 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS-LLWINLYMNDIGDEGAEKIADALKQNR--TITTIDLGGNN 426 (629)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~~--~L~~L~Ls~n~ 426 (629)
++ .+ ..+++|++|++++|.++. ++..+..+++ |++|++++|.++. ++..+...+ +|++|++++|.
T Consensus 346 ip-~~-~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 346 LP-AF-GSEIKLASLNLAYNQITE-----IPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp CC-CC-EEEEEESEEECCSSEEEE-----CCTTSEEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCSSC
T ss_pred hh-hh-CCCCCCCEEECCCCcccc-----ccHhhhhhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECcCCc
Confidence 11 11 234467777777776664 4555666666 7777777776663 444443332 67777777777
Q ss_pred CCHHHHHHHHHHhh-------cCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHH---Hh
Q 006842 427 IHSKGASAIARVLK-------DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM---LR 496 (629)
Q Consensus 427 i~~~~~~~l~~~l~-------~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~---l~ 496 (629)
++.. ++..+. .+++|++|++++|.++...... +..+++|++|+|++|.++......+... ++
T Consensus 414 l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 414 IGSV----DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485 (636)
T ss_dssp TTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH----HHTTCCCSEEECCSSCCSBCCSSSSEETTEECT
T ss_pred CCCc----chhhhcccccccccCCCCCEEECcCCccCcCCHHH----HccCCCCCEEECCCCCCCCcCHHHhcccccccc
Confidence 6654 223333 4456777777777766433222 2234667777777777663322222111 01
Q ss_pred cCCCcCEEEcccCCCCccccccCCCchhhhHHHH--hhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeec------C
Q 006842 497 YNNTISILDLRANGLRDEVCSGCNGLSFFHSAIY--SLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDL------A 568 (629)
Q Consensus 497 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdL------s 568 (629)
.+++|++|+|++|+++.. |..+. .+++|+.|++++|++++ ++..+... ++|++|+| +
T Consensus 486 ~l~~L~~L~Ls~N~l~~l-----------p~~~~~~~l~~L~~L~Ls~N~l~~---ip~~~~~l-~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLTKL-----------SDDFRATTLPYLVGIDLSYNSFSK---FPTQPLNS-STLKGFGIRNQRDAQ 550 (636)
T ss_dssp TGGGCCEEECCSSCCCBC-----------CGGGSTTTCTTCCEEECCSSCCSS---CCCGGGGC-SSCCEEECCSCBCTT
T ss_pred ccCCccEEECcCCcCCcc-----------ChhhhhccCCCcCEEECCCCCCCC---cChhhhcC-CCCCEEECCCCcccc
Confidence 112677777777776633 44454 66777777777777766 23334332 66777777 3
Q ss_pred CCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhH
Q 006842 569 FNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 606 (629)
Q Consensus 569 ~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~ 606 (629)
+|++.+..|..+..+ ++|++|+|++|.|+.++
T Consensus 551 ~N~l~~~~p~~l~~l------~~L~~L~Ls~N~l~~ip 582 (636)
T 4eco_A 551 GNRTLREWPEGITLC------PSLTQLQIGSNDIRKVN 582 (636)
T ss_dssp CCBCCCCCCTTGGGC------SSCCEEECCSSCCCBCC
T ss_pred cCcccccChHHHhcC------CCCCEEECCCCcCCccC
Confidence 455666566555443 45777777777775443
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.3e-34 Score=322.59 Aligned_cols=373 Identities=15% Similarity=0.174 Sum_probs=221.6
Q ss_pred HHHhccCCCccEEEeccCCCCHHH-------------HHHHHHHhh--cCCCcCEEEccCCCCChhHHHHHHHHHhhCCC
Q 006842 183 AESLGYNQTAEEVSFAANGITAAG-------------IKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNAG 247 (629)
Q Consensus 183 ~~~l~~~~~L~~L~Ls~n~i~~~~-------------~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 247 (629)
+..+..+++|++|+|++|.++... -..++..+. .+++|++|+|++|.+... ++..+..+++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~ 516 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ----LPDFLYDLPE 516 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS----CCGGGGGCSS
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc----ChHHHhCCCC
Confidence 344566677777777777766510 011333333 566677777777765443 3444555677
Q ss_pred CCEEEeeccC-CCh-HHHHHHHHH---HhcCCCccEEEeccCCCChhhHHHHHH--HHhhcCCccEEeccCCCCChhhHH
Q 006842 248 VERLQLSSVD-LRD-EGAKAIAEL---LKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGNYGGALGAN 320 (629)
Q Consensus 248 L~~L~L~~n~-l~~-~~~~~l~~~---l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~L~~n~i~~~~~~ 320 (629)
|+.|+|++|+ ++. .-...+... +..+++|++|+|++|.++ .++. .+..+++|+.|++++|.++.++
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-----~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-- 589 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-----EFPASASLQKMVKLGLLDCVHNKVRHLE-- 589 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----BCCCHHHHTTCTTCCEEECTTSCCCBCC--
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----ccCChhhhhcCCCCCEEECCCCCcccch--
Confidence 7777777776 665 322222221 123346777777777764 2233 5566677777777777766433
Q ss_pred HHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCC-ceEEEccCCCCCchhHHHHHHHHHcCC--CccEEEccCC
Q 006842 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGK-LAVLDIGNNSISAKGAFHVAEYIKNCK--SLLWINLYMN 397 (629)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~~--~L~~L~Ls~n 397 (629)
.+..+++|++|++++|.++. ++..+. .+++ |+.|++++|.++. ++..+..+. +|++|++++|
T Consensus 590 ----~~~~L~~L~~L~Ls~N~l~~-----lp~~l~-~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 590 ----AFGTNVKLTDLKLDYNQIEE-----IPEDFC-AFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp ----CCCTTSEESEEECCSSCCSC-----CCTTSC-EECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECCSS
T ss_pred ----hhcCCCcceEEECcCCcccc-----chHHHh-hccccCCEEECcCCCCCc-----CchhhhccccCCCCEEECcCC
Confidence 45566777777777777663 333322 3344 7777777777664 444444433 3777777777
Q ss_pred CCChHHHHHHHHHHh--cCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHH---HhcCCC
Q 006842 398 DIGDEGAEKIADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV---LKFHGN 472 (629)
Q Consensus 398 ~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~---l~~~~~ 472 (629)
.+.... ..++..+. .+++|+.|++++|.++... ...+..+++|++|+|++|.|+......+... ++++++
T Consensus 655 ~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp----~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 655 KIGSEG-RNISCSMDDYKGINASTVTLSYNEIQKFP----TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCSCC----HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGG
T ss_pred cCCCcc-ccchhhhccccCCCcCEEEccCCcCCccC----HHHHccCCCCCEEECCCCcCCccChHHhccccccccccCC
Confidence 765420 00000111 2346777777777777431 1223355778888888877763322211110 112237
Q ss_pred ccEEeccCCCCCHHHHHHHHHHHh--cCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhh------hc
Q 006842 473 INTLKLGWCQIGASGAEFVADMLR--YNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCI------NY 544 (629)
Q Consensus 473 L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~------N~ 544 (629)
|+.|+|++|.++... ..+. .+++|+.|+|++|++.+. |..+..+++|+.|+|++ |+
T Consensus 730 L~~L~Ls~N~L~~lp-----~~l~~~~l~~L~~L~Ls~N~L~~l-----------p~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 730 LTTIDLRFNKLTSLS-----DDFRATTLPYLSNMDVSYNCFSSF-----------PTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp CCEEECCSSCCCCCC-----GGGSTTTCTTCCEEECCSSCCSSC-----------CCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred ccEEECCCCCCccch-----HHhhhccCCCcCEEEeCCCCCCcc-----------chhhhcCCCCCEEECCCCCCccccc
Confidence 788888888876322 2222 457888888888877754 56677889999998876 66
Q ss_pred chhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHHHHHH
Q 006842 545 LQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAK 614 (629)
Q Consensus 545 l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~ 614 (629)
+.+. ++..+..+ ++|++|+|++|+|+. +|..+. ++|+.|||++|+|..+.+..+....
T Consensus 794 l~~~--ip~~l~~L-~~L~~L~Ls~N~L~~-Ip~~l~--------~~L~~LdLs~N~l~~i~~~~~~~~~ 851 (876)
T 4ecn_A 794 ILRQ--WPTGITTC-PSLIQLQIGSNDIRK-VDEKLT--------PQLYILDIADNPNISIDVTSVCPYI 851 (876)
T ss_dssp CCCC--CCTTGGGC-SSCCEEECCSSCCCB-CCSCCC--------SSSCEEECCSCTTCEEECGGGHHHH
T ss_pred cccc--ChHHHhcC-CCCCEEECCCCCCCc-cCHhhc--------CCCCEEECCCCCCCccChHHccccc
Confidence 6654 34444443 889999999999954 555432 3699999999999887776665544
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.4e-34 Score=323.43 Aligned_cols=345 Identities=16% Similarity=0.173 Sum_probs=240.2
Q ss_pred HHHhhcCCCcCEEEccCCCCChhH-------------HHHHHHHHh--hCCCCCEEEeeccCCChHHHHHHHHHHhcCCC
Q 006842 211 DGVLQSNIALKTLNLSGNPIGDEG-------------VKCLCDILV--DNAGVERLQLSSVDLRDEGAKAIAELLKNNSI 275 (629)
Q Consensus 211 ~~~l~~~~~L~~L~Ls~n~i~~~~-------------~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 275 (629)
+..+.++++|++|+|++|.++... -..++..+. .+++|++|+|++|.+... ++..+.++++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~ 516 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ----LPDFLYDLPE 516 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS----CCGGGGGCSS
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc----ChHHHhCCCC
Confidence 344667888999999999887620 011344444 778899999999887654 5566777889
Q ss_pred ccEEEeccCC-CChhhHHHHHHHHhhcC-------CccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHH
Q 006842 276 LRVLELNNNM-IDYSGFTSLAEALLENS-------TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGI 347 (629)
Q Consensus 276 L~~L~L~~n~-i~~~~~~~l~~~l~~~~-------~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 347 (629)
|++|+|++|+ ++. ..++..+..++ +|+.|++++|.++.++.. ..+..+++|++|+|++|.++.
T Consensus 517 L~~L~Ls~N~~lsg---~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~---~~l~~L~~L~~L~Ls~N~l~~--- 587 (876)
T 4ecn_A 517 LQSLNIACNRGISA---AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS---ASLQKMVKLGLLDCVHNKVRH--- 587 (876)
T ss_dssp CCEEECTTCTTSCH---HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH---HHHTTCTTCCEEECTTSCCCB---
T ss_pred CCEEECcCCCCccc---ccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh---hhhhcCCCCCEEECCCCCccc---
Confidence 9999999997 763 13455554444 899999999988755420 156788899999999998874
Q ss_pred HHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCC-ccEEEccCCCCChHHHHHHHHHHhcCC--CccEEEeeC
Q 006842 348 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS-LLWINLYMNDIGDEGAEKIADALKQNR--TITTIDLGG 424 (629)
Q Consensus 348 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~~--~L~~L~Ls~ 424 (629)
++ .+ ..+++|+.|++++|.++. ++..+..+++ |++|++++|.++. ++..+...+ +|+.|++++
T Consensus 588 --lp-~~-~~L~~L~~L~Ls~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 588 --LE-AF-GTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp --CC-CC-CTTSEESEEECCSSCCSC-----CCTTSCEECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECCS
T ss_pred --ch-hh-cCCCcceEEECcCCcccc-----chHHHhhccccCCEEECcCCCCCc-----CchhhhccccCCCCEEECcC
Confidence 22 22 466789999999998884 6666788888 9999999998874 555544443 489999999
Q ss_pred CCCCHHHHHHHHHHhh--cCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHH---HhcCC
Q 006842 425 NNIHSKGASAIARVLK--DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM---LRYNN 499 (629)
Q Consensus 425 n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~---l~~~~ 499 (629)
|.++.... .++..+. .+++|++|+|++|.++...... +..+++|+.|+|++|.|+......+... ++.++
T Consensus 654 N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~----~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 654 NKIGSEGR-NISCSMDDYKGINASTVTLSYNEIQKFPTEL----FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp SCTTTTSS-SCSSCTTTCCCCCEEEEECCSSCCCSCCHHH----HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGG
T ss_pred CcCCCccc-cchhhhccccCCCcCEEEccCCcCCccCHHH----HccCCCCCEEECCCCcCCccChHHhccccccccccC
Confidence 98875310 0111111 2357899999999888543322 2345889999999998874433222111 11223
Q ss_pred CcCEEEcccCCCCccccccCCCchhhhHHHH--hhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCC------CC
Q 006842 500 TISILDLRANGLRDEVCSGCNGLSFFHSAIY--SLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAF------NE 571 (629)
Q Consensus 500 ~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~------N~ 571 (629)
+|++|+|++|+++.. |..+. .+++|+.|+|++|+++++ +..+..+ ++|+.|+|++ |+
T Consensus 729 ~L~~L~Ls~N~L~~l-----------p~~l~~~~l~~L~~L~Ls~N~L~~l---p~~l~~L-~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSL-----------SDDFRATTLPYLSNMDVSYNCFSSF---PTQPLNS-SQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp GCCEEECCSSCCCCC-----------CGGGSTTTCTTCCEEECCSSCCSSC---CCGGGGC-TTCCEEECCCCBCTTCCB
T ss_pred CccEEECCCCCCccc-----------hHHhhhccCCCcCEEEeCCCCCCcc---chhhhcC-CCCCEEECCCCCCccccc
Confidence 899999999988844 55665 888999999999998873 4445433 8899998876 77
Q ss_pred CCchhHHHHHHHHhcCCccceeeeeccCCccchhHHH
Q 006842 572 IRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQS 608 (629)
Q Consensus 572 i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~ 608 (629)
+.+..|..+..+ ++|++|+|++|.|+.++..
T Consensus 794 l~~~ip~~l~~L------~~L~~L~Ls~N~L~~Ip~~ 824 (876)
T 4ecn_A 794 ILRQWPTGITTC------PSLIQLQIGSNDIRKVDEK 824 (876)
T ss_dssp CCCCCCTTGGGC------SSCCEEECCSSCCCBCCSC
T ss_pred ccccChHHHhcC------CCCCEEECCCCCCCccCHh
Confidence 777777776554 5799999999988655443
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.2e-33 Score=301.68 Aligned_cols=383 Identities=13% Similarity=0.108 Sum_probs=223.0
Q ss_pred HHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHH
Q 006842 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (629)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 236 (629)
.+..+++|++|+|++|.++.. .++.+..+++|++|+|++|.|+..... .+++|++|+|++|.++...
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~lp~~-------~l~~L~~L~L~~N~l~~~~-- 106 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYL----DISVFKFNQELEYLDLSHNKLVKISCH-------PTVNLKHLDLSFNAFDALP-- 106 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEE----EGGGGTTCTTCCEEECCSSCCCEEECC-------CCCCCSEEECCSSCCSSCC--
T ss_pred hccccccccEEecCCCccCCc----ChHHhhcccCCCEEecCCCceeecCcc-------ccCCccEEeccCCcccccc--
Confidence 345667777777777777653 234556667777777777776643211 4566777777777765421
Q ss_pred HHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCc--cEEEeccCCC--ChhhHHHHHH----------------
Q 006842 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL--RVLELNNNMI--DYSGFTSLAE---------------- 296 (629)
Q Consensus 237 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L--~~L~L~~n~i--~~~~~~~l~~---------------- 296 (629)
++..+..+++|++|++++|.++... +..+++| ++|++++|.+ .......+..
T Consensus 107 -~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 107 -ICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp -CCGGGGGCTTCCEEEEEESSCCGGG-------GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred -chhhhccCCcceEEEecCcccchhh-------ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence 2234555677777777777776521 2334555 7777777766 2211111110
Q ss_pred ------HHhhcCCccEEeccCCC----CChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEc
Q 006842 297 ------ALLENSTIRSLHLNGNY----GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDI 366 (629)
Q Consensus 297 ------~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 366 (629)
.+..+++|+.|++++|. +... ...+ ..+..+++|++|++++|.+++..+..+..... .++|++|++
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--~~~L~~L~l 254 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYF-LSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVW--HTTVWYFSI 254 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHH-HHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH--TSSCSEEEE
T ss_pred hhhhhhhhhcccceeecccccccccccccee-ecch-hhhccccchhhccccccccCHHHHHHHHHHhh--hCcccEEEe
Confidence 11124455555555553 1111 1122 35667777777777777777666555554432 235666666
Q ss_pred cCCCCCchhHHHHHHHH-----HcCCC--------------------------ccEEEccCCCCChHHHHHHHHHHhcCC
Q 006842 367 GNNSISAKGAFHVAEYI-----KNCKS--------------------------LLWINLYMNDIGDEGAEKIADALKQNR 415 (629)
Q Consensus 367 s~n~l~~~~~~~l~~~l-----~~~~~--------------------------L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 415 (629)
++|.+++. ++..+ ..+++ |++|++++|.+.... ....++
T Consensus 255 ~~n~l~~~----~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~l~ 324 (520)
T 2z7x_B 255 SNVKLQGQ----LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML------CPSKIS 324 (520)
T ss_dssp EEEEEESC----CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC------CCSSCC
T ss_pred ecccccCc----cccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc------chhhCC
Confidence 66655532 22223 33444 444444444443320 013566
Q ss_pred CccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCH-HHHHHHHHH
Q 006842 416 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA-SGAEFVADM 494 (629)
Q Consensus 416 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~ 494 (629)
+|++|++++|++++. ++..+..+++|++|++++|.++..+ .++..+..+++|++|++++|.++. .....
T Consensus 325 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~---- 394 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDT----VFENCGHLTELETLILQMNQLKELS--KIAEMTTQMKSLQQLDISQNSVSYDEKKGD---- 394 (520)
T ss_dssp CCCEEECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCBHH--HHHHHHTTCTTCCEEECCSSCCBCCGGGCS----
T ss_pred cccEEEeECCccChh----hhhhhccCCCCCEEEccCCccCccc--cchHHHhhCCCCCEEECCCCcCCcccccch----
Confidence 777777777777664 3344566677777777777776432 233445566777777777777765 32221
Q ss_pred HhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCc
Q 006842 495 LRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRD 574 (629)
Q Consensus 495 l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~ 574 (629)
+..+++|++|++++|++++.+ +..+. ++|+.|++++|+++. ++..+.. .++|++|||++|+|++
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~----------~~~l~--~~L~~L~Ls~N~l~~---ip~~~~~-l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTI----------FRCLP--PRIKVLDLHSNKIKS---IPKQVVK-LEALQELNVASNQLKS 458 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGG----------GGSCC--TTCCEEECCSSCCCC---CCGGGGG-CTTCCEEECCSSCCCC
T ss_pred hccCccCCEEECcCCCCCcch----------hhhhc--ccCCEEECCCCcccc---cchhhhc-CCCCCEEECCCCcCCc
Confidence 223467777777777776652 22222 688999999998885 3444443 3889999999999987
Q ss_pred hhHHHHHHHHhcCCccceeeeeccCCccchhH
Q 006842 575 DGAFAIAQALKANEDVAVTSLNLANNFLTKFG 606 (629)
Q Consensus 575 ~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~ 606 (629)
..+..+... ++|++|++++|+++...
T Consensus 459 l~~~~~~~l------~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 459 VPDGIFDRL------TSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCTTTTTTC------TTCCEEECCSSCBCCCH
T ss_pred cCHHHhccC------CcccEEECcCCCCcccC
Confidence 433323332 47999999999988643
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.8e-33 Score=308.06 Aligned_cols=417 Identities=12% Similarity=0.122 Sum_probs=249.3
Q ss_pred HHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHH
Q 006842 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (629)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (629)
+..+++|++|+|++|.++... +..+..+++|++|+|++|.++......| ..+++|++|++++|.++..+
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~--- 114 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIE----GDAFYSLGSLEHLDLSDNHLSSLSSSWF----GPLSSLKYLNLMGNPYQTLG--- 114 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSCCCSCCHHHH----TTCTTCCEEECTTCCCSSSC---
T ss_pred hhcCCcccEEECCCCCcCccC----hhhccccccCCEEECCCCccCccCHHHh----ccCCCCcEEECCCCcccccc---
Confidence 456788888888888887642 3456677888888888888876544333 46677888888888876432
Q ss_pred HHHHHhhCCCCCEEEeeccC-CChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCCh
Q 006842 238 LCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (629)
Q Consensus 238 l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (629)
+...+..+++|++|++++|. ++... +..+..+++|++|++++|.++.. .+..+..+++|++|++++|.++.
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIR----RIDFAGLTSLNELEIKALSLRNY----QSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEEC----TTTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSBSTT
T ss_pred hhhhhhccCCccEEECCCCccccccC----HhhhhcccccCeeeccCCccccc----ChhhhhccccCceEecccCcccc
Confidence 12344566888888888887 44321 12345667888888888888643 24455667888888888888766
Q ss_pred hhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccC
Q 006842 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396 (629)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 396 (629)
.+.. .+..+++|++|++++|.++..... ...+....++|+.|++++|.+++.+...+...+..+++|++|++++
T Consensus 187 ~~~~----~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 187 LLEI----FADILSSVRYLELRDTNLARFQFS--PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp HHHH----HHHSTTTBSEEEEESCBCTTCCCC--CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cchh----hHhhcccccEEEccCCcccccccc--ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 5432 234678889999988887652110 0112234567889999999888876666666666666666666666
Q ss_pred CCCChHH-------------------------------HHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcc
Q 006842 397 NDIGDEG-------------------------------AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445 (629)
Q Consensus 397 n~l~~~~-------------------------------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L 445 (629)
|.+.+.+ ...+...+....+|++|++++|.++..... .+..+++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~----~~~~l~~L 336 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS----FSQHLKSL 336 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHH----HHHHCTTC
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHH----HHhcCccc
Confidence 5432200 000001112234566666666665542111 11234666
Q ss_pred cEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCC----
Q 006842 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNG---- 521 (629)
Q Consensus 446 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~---- 521 (629)
++|++++|.+++..+... ..+..+++|++|+|++|.++.... ....+..+++|++|++++|+++.. |..+..
T Consensus 337 ~~L~Ls~N~l~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L 412 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNS-ACKGAWPSLQTLVLSQNHLRSMQK--TGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKM 412 (549)
T ss_dssp CEEECCSSCCCHHHHHHH-TCTTSSTTCCEEECTTSCCCCHHH--HHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTC
T ss_pred cEEEccCCccccccccch-hhhhccccCcEEEccCCccccccc--chhhhhcCCCCCEEECCCCCCccC-Chhhcccccc
Confidence 666666666665432211 112345666666666666655422 112234446666666666666632 221111
Q ss_pred ---------chhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccce
Q 006842 522 ---------LSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAV 592 (629)
Q Consensus 522 ---------l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L 592 (629)
+..++..+ .++|++|++++|++++.. ...++|++|||++|+|+. +|. .... ++|
T Consensus 413 ~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~-------~~l~~L~~L~Ls~N~l~~-ip~-~~~l------~~L 475 (549)
T 2z81_A 413 RFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS-------LFLPRLQELYISRNKLKT-LPD-ASLF------PVL 475 (549)
T ss_dssp CEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC-------CCCTTCCEEECCSSCCSS-CCC-GGGC------TTC
T ss_pred cEEECCCCCcccccchh--cCCceEEECCCCChhhhc-------ccCChhcEEECCCCccCc-CCC-cccC------ccC
Confidence 11111111 146777777777776642 123789999999998885 333 1111 479
Q ss_pred eeeeccCCccchhHHHHHHHHHHHh-hhccceE
Q 006842 593 TSLNLANNFLTKFGQSALTDAKDLV-YEMSEKE 624 (629)
Q Consensus 593 ~~L~L~~N~i~~~~~~~l~~~~~l~-~~l~~~~ 624 (629)
++|+|++|+|++..+..|..+..+. .++.+|.
T Consensus 476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 9999999999988887776655442 3444443
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.9e-34 Score=318.26 Aligned_cols=218 Identities=13% Similarity=0.075 Sum_probs=102.6
Q ss_pred CCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHH
Q 006842 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (629)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 438 (629)
++|++|++++|.++. ++ .+ .+++|++|++++|..... + .+..+++|++|++++|.++..+. ++..
T Consensus 307 ~~L~~L~l~~n~l~~-----lp-~~-~l~~L~~L~l~~n~~~~~----~--~~~~l~~L~~L~ls~n~l~~~~~--~~~~ 371 (606)
T 3vq2_A 307 FKWQSLSIIRCQLKQ-----FP-TL-DLPFLKSLTLTMNKGSIS----F--KKVALPSLSYLDLSRNALSFSGC--CSYS 371 (606)
T ss_dssp CCCSEEEEESCCCSS-----CC-CC-CCSSCCEEEEESCSSCEE----C--CCCCCTTCCEEECCSSCEEEEEE--CCHH
T ss_pred ccCCEEEcccccCcc-----cc-cC-CCCccceeeccCCcCccc----h--hhccCCCCCEEECcCCccCCCcc--hhhh
Confidence 345555555555533 22 12 444444444444422221 1 22334555555555555443210 0122
Q ss_pred hhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcccccc
Q 006842 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSG 518 (629)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~ 518 (629)
+..+++|++|++++|.+.... ..+..+++|++|++++|.+....+. ..+..+++|++|++++|.+.+..|..
T Consensus 372 ~~~~~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~ 443 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAIIMS-----ANFMGLEELQHLDFQHSTLKRVTEF---SAFLSLEKLLYLDISYTNTKIDFDGI 443 (606)
T ss_dssp HHCCSCCCEEECCSCSEEEEC-----CCCTTCTTCCEEECTTSEEESTTTT---TTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred hccCCcccEeECCCCccccch-----hhccCCCCCCeeECCCCccCCccCh---hhhhccccCCEEECcCCCCCccchhh
Confidence 334455555555555543321 1223345555555555554433220 11222355555555555555442221
Q ss_pred CCC-------------ch--hhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHH
Q 006842 519 CNG-------------LS--FFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 583 (629)
Q Consensus 519 ~~~-------------l~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~ 583 (629)
+.. +. ..+..+..+++|+.|++++|++++.. +..+.. .++|++|+|++|++++..|..+..+
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS--WGVFDT-LHRLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTT-CTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC--hhhhcc-cccCCEEECCCCcCCCcCHHHccCC
Confidence 110 01 03445566666777777777666542 222222 2667777777777766555555443
Q ss_pred HhcCCccceeeeeccCCccchhHHH
Q 006842 584 LKANEDVAVTSLNLANNFLTKFGQS 608 (629)
Q Consensus 584 l~~~~~~~L~~L~L~~N~i~~~~~~ 608 (629)
++|++|+|++|+|+.++..
T Consensus 521 ------~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 521 ------YSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp ------TTCCEEECTTSCCCCEESC
T ss_pred ------CcCCEEECCCCcCcccCHh
Confidence 3577777777776654443
No 22
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=3.8e-30 Score=265.92 Aligned_cols=295 Identities=17% Similarity=0.218 Sum_probs=176.5
Q ss_pred EEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCC-CCCEEEeeccCCChHHHHHHHHHHhcC
Q 006842 195 VSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNA-GVERLQLSSVDLRDEGAKAIAELLKNN 273 (629)
Q Consensus 195 L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~ 273 (629)
+++++|.++.. +...+...++|++|+|++|.|++.+...++..+..++ +|++|+|++|.+++.+...+...+...
T Consensus 3 ~~ls~n~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNP----VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCH----HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHH----HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 45666666543 2233334455777777777777666666666666666 677777777777766666666666655
Q ss_pred -CCccEEEeccCCCChhhHHHHHHHHhhc-CCccEEeccCCCCChhhHHHHHHHhcCC-CCccEEEccCCCCChhHHHHH
Q 006842 274 -SILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRAL 350 (629)
Q Consensus 274 -~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l 350 (629)
++|++|+|++|.+++.+...+...+..+ ++|++|++++|.++..+...+...+..+ ++|++|++++|.+++.++..+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 6677777777777666666666666655 6667777776666666666666666553 466666666666666666666
Q ss_pred HHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCC-CccEEEccCCCCChHHHHHHHHHHhc-CCCccEEEeeCCCCC
Q 006842 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIH 428 (629)
Q Consensus 351 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~ 428 (629)
+..+....++|++|+|++|.+++.+...+...+..++ +|++|+|++|.+++.++..++..+.. .++|++|++++|.|+
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 5555433335666666666666665555555555553 66666666666666555555555555 235666666666666
Q ss_pred HHHHHHHHHHhhcCCcccEEECcCCC---CChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHH
Q 006842 429 SKGASAIARVLKDNSVITSLDLAYNP---IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD 493 (629)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 493 (629)
+.+...+...+..+++|++|++++|. ++..+...+...+..+++|+.|++++|.+.+..+..+..
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~ 306 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHH
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHH
Confidence 55555555555555566666666655 444444444444444455555555555555444333333
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.1e-33 Score=305.34 Aligned_cols=404 Identities=15% Similarity=0.122 Sum_probs=269.1
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHH
Q 006842 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (629)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (629)
+++++|+|++|.++... +..+..+++|++|+|++|.|+.... ..+..+++|++|+|++|.|+... ..
T Consensus 21 ~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~lp-----~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELW----TSDILSLSKLRILIISHNRIQYLDI----SVFKFNQELEYLDLSHNKLVKIS-----CH 87 (520)
T ss_dssp TTCSEEECCSSCCCCCC----HHHHTTCTTCCEEECCSSCCCEEEG----GGGTTCTTCCEEECCSSCCCEEE-----CC
T ss_pred ccccEEECCCCcccccC----hhhccccccccEEecCCCccCCcCh----HHhhcccCCCEEecCCCceeecC-----cc
Confidence 68999999999887652 3566778899999999999876533 33457788999999999887542 11
Q ss_pred HhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCc--cEEeccCCCC--Chh
Q 006842 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG--GAL 317 (629)
Q Consensus 242 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L--~~L~L~~n~i--~~~ 317 (629)
.+++|++|+|++|.++... ++..+..+++|++|++++|.|+.. .+..+++| ++|++++|.+ ...
T Consensus 88 --~l~~L~~L~L~~N~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALP---ICKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCC---CCGGGGGCTTCCEEEEEESSCCGG-------GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred --ccCCccEEeccCCcccccc---chhhhccCCcceEEEecCcccchh-------hccccccceeeEEEeeccccccccc
Confidence 5688999999999887521 234566778999999999998752 34456777 9999998887 332
Q ss_pred hHHHHHH----------------------HhcCCCCccEEEccCCCC--ChhHHHHHHHhhccCCCCceEEEccCCCCCc
Q 006842 318 GANALAK----------------------GLEGNKSLRELHLHGNSI--GDEGIRALMSGLSSRKGKLAVLDIGNNSISA 373 (629)
Q Consensus 318 ~~~~l~~----------------------~l~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 373 (629)
....+.. .+..+++|+.|++++|.. ...........+ ..+++|+.|++++|.++.
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL-QTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGG-GGCTTCCEEEEEEEEEEH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhh-ccccchhhccccccccCH
Confidence 2211111 122356677777777641 111111122233 345678888888888777
Q ss_pred hhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHH-----hcCCCccEEEeeCCCCCHHHHHHHHHH----------
Q 006842 374 KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL-----KQNRTITTIDLGGNNIHSKGASAIARV---------- 438 (629)
Q Consensus 374 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-----~~~~~L~~L~Ls~n~i~~~~~~~l~~~---------- 438 (629)
.....+...+ ..++|++|++++|.+++. ++..+ ..+++|+.+++++|.+ ......+...
T Consensus 235 ~~~~~~~~~~-~~~~L~~L~l~~n~l~~~----~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 235 NSFIRILQLV-WHTTVWYFSISNVKLQGQ----LDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp HHHHHHHHHH-HTSSCSEEEEEEEEEESC----CCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred HHHHHHHHHh-hhCcccEEEeecccccCc----cccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 6555554443 246888888888876532 23233 3344444444444444 1100111111
Q ss_pred -----------hhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcc
Q 006842 439 -----------LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (629)
Q Consensus 439 -----------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 507 (629)
...+++|++|++++|.+++..+. .+..+++|++|++++|.++..+ .+...+..+++|++|+++
T Consensus 309 l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~--~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELS--KIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT----TCCCCSSCCEEECCSSCCCBHH--HHHHHHTTCTTCCEEECC
T ss_pred cCCCccccccchhhCCcccEEEeECCccChhhhh----hhccCCCCCEEEccCCccCccc--cchHHHhhCCCCCEEECC
Confidence 15678999999999999874333 3356789999999999998642 234445666999999999
Q ss_pred cCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcC
Q 006842 508 ANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKAN 587 (629)
Q Consensus 508 ~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 587 (629)
+|.+.+.+| ...+..+++|+.|++++|++++.. +..+ .++|++||+++|+|+. +|..+...
T Consensus 383 ~N~l~~~l~---------~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l---~~~L~~L~Ls~N~l~~-ip~~~~~l---- 443 (520)
T 2z7x_B 383 QNSVSYDEK---------KGDCSWTKSLLSLNMSSNILTDTI--FRCL---PPRIKVLDLHSNKIKS-IPKQVVKL---- 443 (520)
T ss_dssp SSCCBCCGG---------GCSCCCCTTCCEEECCSSCCCGGG--GGSC---CTTCCEEECCSSCCCC-CCGGGGGC----
T ss_pred CCcCCcccc---------cchhccCccCCEEECcCCCCCcch--hhhh---cccCCEEECCCCcccc-cchhhhcC----
Confidence 999998422 224667899999999999998642 2222 2689999999999995 56555433
Q ss_pred CccceeeeeccCCccchhHHHHHHHHHHH-hhhccceE
Q 006842 588 EDVAVTSLNLANNFLTKFGQSALTDAKDL-VYEMSEKE 624 (629)
Q Consensus 588 ~~~~L~~L~L~~N~i~~~~~~~l~~~~~l-~~~l~~~~ 624 (629)
++|++|+|++|+|++++...|..+..+ ..++.+|.
T Consensus 444 --~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 444 --EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp --TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred --CCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 579999999999998776655554443 23444443
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=9.2e-34 Score=318.54 Aligned_cols=403 Identities=17% Similarity=0.184 Sum_probs=195.1
Q ss_pred hcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHH
Q 006842 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (629)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (629)
.+++|++|+|++|.++... +..+..+++|++|+|++|.++..... .+..+++|++|+|++|.++... .
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~----~ 114 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLE----PELCQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQKIK----N 114 (680)
T ss_dssp GGTTCSEEECCSSCCCCCC----TTHHHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCC----S
T ss_pred CCCcCcEEECCCCccCccC----HHHHhcccCcCEEECCCCccCccChh----hhccCCCCCEEECCCCccCccC----h
Confidence 4455555555555554431 22333445555555555555432211 2234455555555555554321 1
Q ss_pred HHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChh--
Q 006842 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL-- 317 (629)
Q Consensus 240 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-- 317 (629)
..+..+++|++|++++|.++... +..+..+++|++|++++|.++......+. ...+++|++|++++|.++..
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTK----LGTQVQLENLQELLLSNNKIQALKSEELD--IFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCC----CCSSSCCTTCCEEECCSSCCCCBCHHHHG--GGTTCEESEEECTTCCCCCBCT
T ss_pred hHccccCCCCEEECCCCcccccC----chhhcccccCCEEEccCCcccccCHHHhh--ccccccccEEECCCCcccccCh
Confidence 22334455555555555554321 11223445555555555555432211110 11234555555555544433
Q ss_pred ----------------------hHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchh
Q 006842 318 ----------------------GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 375 (629)
Q Consensus 318 ----------------------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 375 (629)
....++..+ ..++|++|++++|.+++.....+.. + ..++|++|++++|.++..
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~-l--~~~~L~~L~Ls~n~l~~~- 263 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLG-L--KWTNLTMLDLSYNNLNVV- 263 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGG-G--GGSCCCEEECTTSCCCEE-
T ss_pred hhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhc-c--CcCCCCEEECCCCCcCcc-
Confidence 233333322 2356677777777665532222210 0 012488888888888775
Q ss_pred HHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHH-HHHHHHH----HhhcCCcccEEEC
Q 006842 376 AFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK-GASAIAR----VLKDNSVITSLDL 450 (629)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~----~l~~~~~L~~L~L 450 (629)
.+..+..+++|++|++++|.+... .+..+..+++|++|++++|..... ....++. .+..+++|++|++
T Consensus 264 ---~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 264 ---GNDSFAWLPQLEYFFLEYNNIQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp ---CTTTTTTCTTCCEEECCSCCBSEE----CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred ---CcccccCcccccEeeCCCCccCcc----ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 345567788888888888877654 333444445555555544432210 0000110 2334455555555
Q ss_pred cCCCCChhHHHHHHHHHhcCC----------------------------CccEEeccCCCCCHHHHHHHHHHHhcCCCcC
Q 006842 451 AYNPIGADGAKALSEVLKFHG----------------------------NINTLKLGWCQIGASGAEFVADMLRYNNTIS 502 (629)
Q Consensus 451 s~n~i~~~~~~~l~~~l~~~~----------------------------~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 502 (629)
++|.++......+ ..++ +|+.|++++|.++...+..+ ..+++|+
T Consensus 337 ~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~----~~l~~L~ 408 (680)
T 1ziw_A 337 EDNDIPGIKSNMF----TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF----SWLGHLE 408 (680)
T ss_dssp CSCCBCCCCTTTT----TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT----TTCTTCC
T ss_pred CCCccCCCChhHh----ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh----hCCCCCC
Confidence 5555443322111 2223 44445555555544333222 2336666
Q ss_pred EEEcccCCCCccccc-cCCC-------------ch-hhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeec
Q 006842 503 ILDLRANGLRDEVCS-GCNG-------------LS-FFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDL 567 (629)
Q Consensus 503 ~L~Ls~N~l~~~~~~-~~~~-------------l~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdL 567 (629)
+|++++|.+.+.+|. .+.. +. ..+..|..+++|+.|++++|.+++....+..+... ++|++||+
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l-~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL-RNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC-TTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC-CCCCEEEC
Confidence 666666666554221 1100 00 01233444455555555555544322233333333 67888888
Q ss_pred CCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHH
Q 006842 568 AFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 607 (629)
Q Consensus 568 s~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~ 607 (629)
++|+|++..+..+... .+|++|+|++|.+++...
T Consensus 488 s~N~l~~i~~~~~~~l------~~L~~L~Ls~N~l~~~~~ 521 (680)
T 1ziw_A 488 SNNNIANINDDMLEGL------EKLEILDLQHNNLARLWK 521 (680)
T ss_dssp CSSCCCCCCTTTTTTC------TTCCEEECCSSCCGGGGS
T ss_pred CCCCCCcCChhhhccc------cccCEEeCCCCCccccch
Confidence 8888887655555433 468888888888887643
No 25
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=9.5e-29 Score=273.31 Aligned_cols=398 Identities=14% Similarity=0.144 Sum_probs=299.2
Q ss_pred HHHHHHHHHhcCCccEEEccCC-CCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCC
Q 006842 151 KQTLNEFAKELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP 229 (629)
Q Consensus 151 ~~~l~~~~~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 229 (629)
...+..+.+.+++|++|+|++| .+++.++..+ +..+++|++|+|++|.+++.+...+......+++|++|++++|.
T Consensus 119 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 119 DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 3455556667999999999999 7777765444 44579999999999998877666666666678899999999996
Q ss_pred --CChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCC--CChhhHHHHHHHHhhcCCcc
Q 006842 230 --IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM--IDYSGFTSLAEALLENSTIR 305 (629)
Q Consensus 230 --i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~ 305 (629)
++... +......+++|++|++++|.- . ..++..+..+++|++|+++.+. +....+..+...+.++++|+
T Consensus 196 ~~~~~~~---l~~l~~~~~~L~~L~L~~~~~-~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~ 268 (594)
T 2p1m_B 196 SEVSFSA---LERLVTRCPNLKSLKLNRAVP-L---EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268 (594)
T ss_dssp SCCCHHH---HHHHHHHCTTCCEEECCTTSC-H---HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCC
T ss_pred CcCCHHH---HHHHHHhCCCCcEEecCCCCc-H---HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcc
Confidence 66554 444455689999999999832 1 2277788889999999988774 66667778888899999999
Q ss_pred EE-eccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHH
Q 006842 306 SL-HLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384 (629)
Q Consensus 306 ~L-~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 384 (629)
.| .+.+... ..++..+..+++|++|++++|.+++.++..+. ..+++|++|++++| +++.+ +.....
T Consensus 269 ~Ls~~~~~~~-----~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~----~~~~~L~~L~l~~~-~~~~~---l~~l~~ 335 (594)
T 2p1m_B 269 CLSGFWDAVP-----AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL----CQCPKLQRLWVLDY-IEDAG---LEVLAS 335 (594)
T ss_dssp EEECCBTCCG-----GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHH----TTCTTCCEEEEEGG-GHHHH---HHHHHH
T ss_pred cccCCcccch-----hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHH----hcCCCcCEEeCcCc-cCHHH---HHHHHH
Confidence 99 4444322 12223344678999999999999887665544 45678999999998 65544 333445
Q ss_pred cCCCccEEEc---------cCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECc--C-
Q 006842 385 NCKSLLWINL---------YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA--Y- 452 (629)
Q Consensus 385 ~~~~L~~L~L---------s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls--~- 452 (629)
.+++|++|++ +.+.+++.++..+.. .+++|++|++..|.+++.+...+.. .+++|++|+++ +
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~---~~~~L~~L~~~~~~l~~~~~~~l~~---~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM---GCPKLESVLYFCRQMTNAALITIAR---NRPNMTRFRLCIIEP 409 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH---HCTTCCEEEEEESCCCHHHHHHHHH---HCTTCCEEEEEESST
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHH---hchhHHHHHHhcCCcCHHHHHHHHh---hCCCcceeEeecccC
Confidence 7899999999 446888887666543 4789999999999999987666654 36999999999 4
Q ss_pred ---CCCC----hhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhh
Q 006842 453 ---NPIG----ADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFF 525 (629)
Q Consensus 453 ---n~i~----~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~ 525 (629)
+.++ +.+... .+..+++|+.|+|++ .+++.+...+... +++|++|+|++|.+++. .
T Consensus 410 ~~~~~l~~~~~~~~~~~---l~~~~~~L~~L~L~~-~l~~~~~~~l~~~---~~~L~~L~L~~~~i~~~----------~ 472 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGFGA---IVEHCKDLRRLSLSG-LLTDKVFEYIGTY---AKKMEMLSVAFAGDSDL----------G 472 (594)
T ss_dssp TCCCTTTCCCTHHHHHH---HHHHCTTCCEEECCS-SCCHHHHHHHHHH---CTTCCEEEEESCCSSHH----------H
T ss_pred CCcccccCCchhhHHHH---HHhhCCCccEEeecC-cccHHHHHHHHHh---chhccEeeccCCCCcHH----------H
Confidence 6677 444443 356678999999987 8888887777663 49999999999999876 3
Q ss_pred hHHH-HhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCc
Q 006842 526 HSAI-YSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNF 601 (629)
Q Consensus 526 ~~~~-~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~ 601 (629)
...+ ..+++|+.|++++|.+++. .+..... ..++|++|++++|.+++.+...+...++ .|+...+..+.
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~~~~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~lp-----~l~i~~~~~~~ 542 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPFGDK-ALLANAS-KLETMRSLWMSSCSVSFGACKLLGQKMP-----KLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSCCHH-HHHHTGG-GGGGSSEEEEESSCCBHHHHHHHHHHCT-----TEEEEEECSSS
T ss_pred HHHHHhcCCCcCEEECcCCCCcHH-HHHHHHH-hCCCCCEEeeeCCCCCHHHHHHHHHhCC-----CCEEEEecCCC
Confidence 3344 7799999999999999543 2332222 2389999999999998877777755432 56666666654
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.3e-33 Score=313.14 Aligned_cols=386 Identities=16% Similarity=0.158 Sum_probs=232.5
Q ss_pred HhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHH
Q 006842 159 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (629)
Q Consensus 159 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 238 (629)
..+++|++|+|++|.++.. .++.+..+++|++|+|++|.++...... +..+++|++|++++|.+.... +
T Consensus 77 ~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~---l 145 (606)
T 3vq2_A 77 HGLHHLSNLILTGNPIQSF----SPGSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCK---L 145 (606)
T ss_dssp TTCTTCCEEECTTCCCCCC----CTTSSTTCTTCCEEECTTSCCCCSSSSC----CTTCTTCCEEECCSSCCCCCC---C
T ss_pred hchhhcCEeECCCCccccc----ChhhcCCcccCCEEEccCCccccccccc----cCCCCCCCEEeCCCCccccee---c
Confidence 4567777777777777653 1445666777777777777765432222 345667777777777765421 2
Q ss_pred HHHHhhCCCCCEEEeeccCCChHHHHHHHHHHh-----------------------cCCCccEEEeccCCCChhhHHHHH
Q 006842 239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLK-----------------------NNSILRVLELNNNMIDYSGFTSLA 295 (629)
Q Consensus 239 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-----------------------~~~~L~~L~L~~n~i~~~~~~~l~ 295 (629)
+..+..+++|++|++++|.++......+...-. ...+|++|++++|.++.. .++
T Consensus 146 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~---~~~ 222 (606)
T 3vq2_A 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN---IMK 222 (606)
T ss_dssp CGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHH---HHH
T ss_pred hHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchh---HHH
Confidence 344556677777777777776543333322210 112455566666655432 222
Q ss_pred HHHhhc--------------------------------------------------------CCccEEeccCCCCChhhH
Q 006842 296 EALLEN--------------------------------------------------------STIRSLHLNGNYGGALGA 319 (629)
Q Consensus 296 ~~l~~~--------------------------------------------------------~~L~~L~L~~n~i~~~~~ 319 (629)
..+..+ ++|+.|++++|.++..+
T Consensus 223 ~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~- 301 (606)
T 3vq2_A 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE- 301 (606)
T ss_dssp HHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-
T ss_pred HHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-
Confidence 222222 23333444444433322
Q ss_pred HHHHHHhcCCCCccEEEccCCCCChhHHHHH----------------HHhhccCCCCceEEEccCCCCCchhHHHHHHHH
Q 006842 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRAL----------------MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383 (629)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l----------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 383 (629)
.+..+++|++|++++|.++... .+ .......+++|++|++++|.++..+. ++..+
T Consensus 302 -----~l~~~~~L~~L~l~~n~l~~lp--~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~ 372 (606)
T 3vq2_A 302 -----DVPKHFKWQSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC--CSYSD 372 (606)
T ss_dssp -----CCCTTCCCSEEEEESCCCSSCC--CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEE--CCHHH
T ss_pred -----hccccccCCEEEcccccCcccc--cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcc--hhhhh
Confidence 2344455666666666553211 00 00001234466666666666654310 13445
Q ss_pred HcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHH-HHhhcCCcccEEECcCCCCChhHHHH
Q 006842 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIA-RVLKDNSVITSLDLAYNPIGADGAKA 462 (629)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (629)
..+++|++|++++|.++. ++..+..+++|++|++++|.++.. .+ ..+..+++|++|++++|.+....+.
T Consensus 373 ~~~~~L~~L~L~~n~l~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 442 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAII-----MSANFMGLEELQHLDFQHSTLKRV----TEFSAFLSLEKLLYLDISYTNTKIDFDG- 442 (606)
T ss_dssp HCCSCCCEEECCSCSEEE-----ECCCCTTCTTCCEEECTTSEEEST----TTTTTTTTCTTCCEEECTTSCCEECCTT-
T ss_pred ccCCcccEeECCCCcccc-----chhhccCCCCCCeeECCCCccCCc----cChhhhhccccCCEEECcCCCCCccchh-
Confidence 667777777777776655 234455667777777777776653 11 3455667788888888877654332
Q ss_pred HHHHHhcCCCccEEeccCCCCCHH-HHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhh
Q 006842 463 LSEVLKFHGNINTLKLGWCQIGAS-GAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLC 541 (629)
Q Consensus 463 l~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls 541 (629)
.+..+++|++|++++|.+++. .+. .+..+++|++|++++|++++. .+..+..+++|+.|+++
T Consensus 443 ---~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 443 ---IFLGLTSLNTLKMAGNSFKDNTLSN----VFANTTNLTFLDLSKCQLEQI----------SWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp ---TTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEE----------CTTTTTTCTTCCEEECC
T ss_pred ---hhcCCCCCCEEECCCCcCCCcchHH----hhccCCCCCEEECCCCcCCcc----------ChhhhcccccCCEEECC
Confidence 234557888888888877652 222 233458888888888888877 56778899999999999
Q ss_pred hhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccch
Q 006842 542 INYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 604 (629)
Q Consensus 542 ~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 604 (629)
+|++++.. +..+... ++|++|||++|+|+. .|..+... + .+|++|++++|++..
T Consensus 506 ~N~l~~~~--~~~~~~l-~~L~~L~l~~N~l~~-~p~~~~~l----~-~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 506 HNNLLFLD--SSHYNQL-YSLSTLDCSFNRIET-SKGILQHF----P-KSLAFFNLTNNSVAC 559 (606)
T ss_dssp SSCCSCEE--GGGTTTC-TTCCEEECTTSCCCC-EESCGGGS----C-TTCCEEECCSCCCCC
T ss_pred CCcCCCcC--HHHccCC-CcCCEEECCCCcCcc-cCHhHhhh----c-ccCcEEEccCCCccc
Confidence 99999852 4444433 889999999999997 44444333 1 259999999999986
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=5.9e-33 Score=311.98 Aligned_cols=393 Identities=17% Similarity=0.139 Sum_probs=191.0
Q ss_pred cCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHh-----------------------hcC
Q 006842 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVL-----------------------QSN 217 (629)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-----------------------~~~ 217 (629)
+++|++|++++|.++... +..+..+.+|+.|+++++.+.......+...+ ..+
T Consensus 170 ~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFS----PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp TCEESEEECTTCCCCCBC----TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred cccccEEECCCCcccccC----hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence 466777777777665432 22333344444444444444333333322221 111
Q ss_pred --CCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChh-hHHHH
Q 006842 218 --IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS-GFTSL 294 (629)
Q Consensus 218 --~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-~~~~l 294 (629)
++|++|+|++|.++... ...+..+++|++|++++|.++.. .+..+..+++|++|++++|..... ....+
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVG----NDSFAWLPQLEYFFLEYNNIQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp GGSCCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSCCBSEE----CTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred CcCCCCEEECCCCCcCccC----cccccCcccccEeeCCCCccCcc----ChhhhcCCCCccEEeccchhhhcccccccc
Confidence 23666666666555432 12234456666666666665543 222334445566666655432210 00011
Q ss_pred HH----HHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHH-HHhhccCCCCceEEEccCC
Q 006842 295 AE----ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL-MSGLSSRKGKLAVLDIGNN 369 (629)
Q Consensus 295 ~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n 369 (629)
+. .+..+++|++|++++|.++.... ..+..+++|++|++++|.+....+... ... ...++|+.|++++|
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~--~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKS----NMFTGLINLKYLSLSNSFTSLRTLTNETFVS--LAHSPLHILNLTKN 391 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCT----TTTTTCTTCCEEECTTCBSCCCEECTTTTGG--GTTSCCCEEECTTS
T ss_pred cccChhhcccCCCCCEEECCCCccCCCCh----hHhccccCCcEEECCCCchhhhhcchhhhcc--cccCcCceEECCCC
Confidence 11 34567888888888888776543 345677888888888776432111000 000 01235777777777
Q ss_pred CCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHH-HHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEE
Q 006842 370 SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA-DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448 (629)
Q Consensus 370 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L 448 (629)
+++.. .+..+..+++|++|++++|.+++. ++ ..+..+++|++|++++|+++... ...+..+++|++|
T Consensus 392 ~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~~~~L~~L 459 (680)
T 1ziw_A 392 KISKI----ESDAFSWLGHLEVLDLGLNEIGQE----LTGQEWRGLENIFEIYLSYNKYLQLT----RNSFALVPSLQRL 459 (680)
T ss_dssp CCCEE----CTTTTTTCTTCCEEECCSSCCEEE----CCSGGGTTCTTCCEEECCSCSEEECC----TTTTTTCTTCCEE
T ss_pred CCCeE----ChhhhhCCCCCCEEeCCCCcCccc----cCcccccCcccccEEecCCCCcceeC----hhhhhcCcccccc
Confidence 77664 344556677777777777766532 11 24555666777777776654431 1223334555555
Q ss_pred ECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHH----------------------------HhcCCC
Q 006842 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM----------------------------LRYNNT 500 (629)
Q Consensus 449 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~----------------------------l~~~~~ 500 (629)
++++|.+...+ .+...+..+++|++|++++|.++...+..+..+ +..+++
T Consensus 460 ~l~~n~l~~~~--~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~ 537 (680)
T 1ziw_A 460 MLRRVALKNVD--SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537 (680)
T ss_dssp ECTTSCCBCTT--CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred hhccccccccc--cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCC
Confidence 55555443110 011122333445555555555443322222211 222344
Q ss_pred cCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHH
Q 006842 501 ISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 580 (629)
Q Consensus 501 L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l 580 (629)
|++|+|++|+++.. .+..|.++++|+.|++++|+++++ +...+...++|++|+|++|+|++..+..+
T Consensus 538 L~~L~L~~N~l~~i----------~~~~~~~l~~L~~L~Ls~N~l~~l---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 538 LHILNLESNGFDEI----------PVEVFKDLFELKIIDLGLNNLNTL---PASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp CCEEECCSSCCCCC----------CTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred CCEEECCCCCCCCC----------CHHHcccccCcceeECCCCCCCcC---CHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 44444444444433 223455555555555555555543 22111122555555665555555554444
Q ss_pred HHHHhcCCccceeeeeccCCccc
Q 006842 581 AQALKANEDVAVTSLNLANNFLT 603 (629)
Q Consensus 581 ~~~l~~~~~~~L~~L~L~~N~i~ 603 (629)
...+ .+|+.|++++|++.
T Consensus 605 ~~~~-----~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 605 GPAF-----RNLTELDMRFNPFD 622 (680)
T ss_dssp HHHH-----TTCSEEECTTCCCC
T ss_pred cccc-----cccCEEEccCCCcc
Confidence 3121 24555555555544
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.5e-32 Score=291.85 Aligned_cols=342 Identities=17% Similarity=0.126 Sum_probs=173.2
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCC-HHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHH
Q 006842 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGIT-AAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (629)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~-~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 240 (629)
+++++|+|++|.+++. .+..+..+++|++|+|++|.+. .... ..+..+++|++|+|++|.++... +.
T Consensus 30 ~~l~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~i~~----~~~~~l~~L~~L~Ls~n~l~~~~----~~ 97 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL----NETSFSRLQDLQFLKVEQQTPGLVIRN----NTFRGLSSLIILKLDYNQFLQLE----TG 97 (455)
T ss_dssp TTCCEEECCSSCCCEE----CTTTTSSCTTCCEEECCCCSTTCEECT----TTTTTCTTCCEEECTTCTTCEEC----TT
T ss_pred CccCEEEecCCccCcC----ChhHhccCccccEEECcCCcccceECc----ccccccccCCEEeCCCCccCccC----hh
Confidence 5677888888877654 2445666777888888877764 2111 22345667777777777776542 33
Q ss_pred HHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHH-HhhcCCccEEeccCCCCChhhH
Q 006842 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA-LLENSTIRSLHLNGNYGGALGA 319 (629)
Q Consensus 241 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~ 319 (629)
.+..+++|++|+|++|.+++..... ..+..+++|++|+|++|.++... +.. +..+++|++|++++|.++....
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQ----PASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCC----CCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred hccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccC----cccccCCCCcccEEeCCCCcccccCh
Confidence 4455677777777777776531110 12455677777777777775321 111 4456777777777776655433
Q ss_pred HHHHHHhcCCCCccEEEccCCCCChhHHHHHH----HhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEcc
Q 006842 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALM----SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (629)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 395 (629)
..+.. + ...+|+.|++++|.+.+.....+. ..+ ...++|++|++++|.++......+... ...++|+.|+++
T Consensus 172 ~~l~~-l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~~-~~~~~L~~L~l~ 247 (455)
T 3v47_A 172 EDLLN-F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FKNTSITTLDLSGNGFKESMAKRFFDA-IAGTKIQSLILS 247 (455)
T ss_dssp TTSGG-G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCT-TTTCEEEEEECTTSCCCHHHHHHHHHH-TTTCCEEEEECT
T ss_pred hhhhc-c-ccccccccccccCcccccchhhccccccccc-cccceeeeEecCCCcccccchhhhhcc-ccccceeeEeec
Confidence 22111 0 124667777777766542211110 001 122456677777776666522222211 112566666666
Q ss_pred CCCCChHHHHH------HHHHHh--cCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHH
Q 006842 396 MNDIGDEGAEK------IADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (629)
Q Consensus 396 ~n~l~~~~~~~------l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (629)
+|.+....... ....+. ..++|++|++++|.++.. .+..+..+++|++|++++|.++......+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---- 319 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----LKSVFSHFTDLEQLTLAQNEINKIDDNAF---- 319 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECTTTT----
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCcccccc----chhhcccCCCCCEEECCCCcccccChhHh----
Confidence 66432210000 000000 123455555555555543 23334444555555555555544322222
Q ss_pred hcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchh
Q 006842 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (629)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 547 (629)
..+++|++|+|++|.++...+..+. .+++|++|+|++|++++. .+..|..+++|++|++++|++++
T Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLGSIDSRMFE----NLDKLEVLDLSYNHIRAL----------GDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGGT----TCTTCCEEECCSSCCCEE----------CTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCcccCCEEECCCCccCCcChhHhc----CcccCCEEECCCCccccc----------ChhhccccccccEEECCCCcccc
Confidence 2334555555555555443332222 225555555555555544 33344444455555555554444
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1e-33 Score=324.71 Aligned_cols=400 Identities=18% Similarity=0.121 Sum_probs=216.4
Q ss_pred HHhcCCccEEEccCCCC-CHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHH
Q 006842 158 AKELRAFSSVDMSGRNF-GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (629)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 236 (629)
+..+++|++|+|++|.+ .... ++.|..+++|++|+|++|.|+.... ..+..+++|++|+|++|.+++....
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~----~~~f~~L~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~~~ 115 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTID----KEAFRNLPNLRILDLGSSKIYFLHP----DAFQGLFHLFELRLYFCGLSDAVLK 115 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEEC----TTTTSSCTTCCEEECTTCCCCEECT----TSSCSCSSCCCEECTTCCCSSCCST
T ss_pred CcccccCeEEeCCCCCCccccC----HHHhcCCCCCCEEECCCCcCcccCH----hHccCCcccCEeeCcCCCCCccccc
Confidence 34678888888888843 2211 3456777888888888888765432 3345677888888888887653111
Q ss_pred HHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCCh
Q 006842 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (629)
Q Consensus 237 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (629)
...+..+++|++|+|++|.++... .+..+.++++|++|+|++|.++......+... . .++|+.|++++|.+..
T Consensus 116 --~~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l-~-~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 116 --DGYFRNLKALTRLDLSKNQIRSLY---LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-Q-GKTLSFFSLAANSLYS 188 (844)
T ss_dssp --TCCCSSCSSCCEEEEESCCCCCCC---CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH-H-HCSSCCCEECCSBSCC
T ss_pred --CccccccCCCCEEECCCCcccccc---cchhHhhCCCCCEEECCCCcCCeeCHHHcccc-c-CCccceEECCCCcccc
Confidence 112455688888888888877532 12345677888888888888765322222211 0 1444555554444332
Q ss_pred hhHHHHHHHhcCCC------CccEEEccCCCCChhHHHHHHH--------------------------------------
Q 006842 317 LGANALAKGLEGNK------SLRELHLHGNSIGDEGIRALMS-------------------------------------- 352 (629)
Q Consensus 317 ~~~~~l~~~l~~~~------~L~~L~Ls~n~l~~~~~~~l~~-------------------------------------- 352 (629)
... ..+..++ .|++|++++|.++......+..
T Consensus 189 ~~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~ 264 (844)
T 3j0a_A 189 RVS----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264 (844)
T ss_dssp CCC----CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred ccc----cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence 111 0011111 2555555555443222111111
Q ss_pred -------------------hhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhc
Q 006842 353 -------------------GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 413 (629)
Q Consensus 353 -------------------~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 413 (629)
.....+++|+.|+|++|.++.. .+..+..+++|++|++++|.++.. .+..+..
T Consensus 265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~ 336 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLGEL----YSSNFYG 336 (844)
T ss_dssp TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCSCC----CSCSCSS
T ss_pred cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCCcc----CHHHhcC
Confidence 1112333444455555444443 223344444555555555544432 2233444
Q ss_pred CCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEecc--------------
Q 006842 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG-------------- 479 (629)
Q Consensus 414 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~-------------- 479 (629)
+++|++|++++|.++... ...+..+++|++|++++|.++... .+++|+.|+++
T Consensus 337 l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~i~---------~~~~L~~L~l~~N~l~~l~~~~~~l 403 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQ----DQTFKFLEKLQTLDLRDNALTTIH---------FIPSIPDIFLSGNKLVTLPKINLTA 403 (844)
T ss_dssp CTTCCEEECCSCCCCCCC----SSCSCSCCCCCEEEEETCCSCCCS---------SCCSCSEEEEESCCCCCCCCCCTTC
T ss_pred CCCCCEEECCCCCCCccC----hhhhcCCCCCCEEECCCCCCCccc---------CCCCcchhccCCCCccccccccccc
Confidence 445555555555444321 112344455555555555544211 11223333322
Q ss_pred ------CCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccc----cC----------CCc------hhhhHHHHhhh
Q 006842 480 ------WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCS----GC----------NGL------SFFHSAIYSLK 533 (629)
Q Consensus 480 ------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~----~~----------~~l------~~~~~~~~~l~ 533 (629)
+|.++..... ..+..+++|++|+|++|++++..+. .. +.+ ...+..|.+++
T Consensus 404 ~~L~ls~N~l~~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~ 480 (844)
T 3j0a_A 404 NLIHLSENRLENLDIL---YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480 (844)
T ss_dssp CEEECCSCCCCSSTTH---HHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBC
T ss_pred ceeecccCccccCchh---hhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcc
Confidence 2232222111 1233558888888888888754221 11 111 11234577889
Q ss_pred hhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHHH
Q 006842 534 HMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALT 611 (629)
Q Consensus 534 ~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~ 611 (629)
+|+.|+|++|++++.. +..+. ..++|++|||++|+|++..+..+. .+|+.|+|++|+|++..+..|.
T Consensus 481 ~L~~L~Ls~N~l~~~~--~~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~--------~~L~~L~Ls~N~l~~~~~~~~~ 547 (844)
T 3j0a_A 481 HLQVLYLNHNYLNSLP--PGVFS-HLTALRGLSLNSNRLTVLSHNDLP--------ANLEILDISRNQLLAPNPDVFV 547 (844)
T ss_dssp CEECCCCCHHHHTTCC--TTSSS-SCCSCSEEEEESCCCSSCCCCCCC--------SCCCEEEEEEECCCCCCSCCCS
T ss_pred cccEEECCCCcccccC--hhHcc-chhhhheeECCCCCCCccChhhhh--------ccccEEECCCCcCCCCChhHhC
Confidence 9999999999998753 22233 338899999999999885554432 3699999999999988776654
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=8.1e-33 Score=295.63 Aligned_cols=386 Identities=14% Similarity=0.089 Sum_probs=282.9
Q ss_pred cEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhh
Q 006842 165 SSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD 244 (629)
Q Consensus 165 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 244 (629)
+.++.+++.++.. +. -.++|++|+|++|.|+.... ..+..+++|++|+|++|.+...- -...+..
T Consensus 13 ~~~~c~~~~l~~l-----p~---l~~~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~ 77 (455)
T 3v47_A 13 YNAICINRGLHQV-----PE---LPAHVNYVDLSLNSIAELNE----TSFSRLQDLQFLKVEQQTPGLVI---RNNTFRG 77 (455)
T ss_dssp TEEECCSSCCSSC-----CC---CCTTCCEEECCSSCCCEECT----TTTSSCTTCCEEECCCCSTTCEE---CTTTTTT
T ss_pred cccCcCCCCcccC-----CC---CCCccCEEEecCCccCcCCh----hHhccCccccEEECcCCcccceE---Ccccccc
Confidence 3577777777653 32 23789999999999986533 33467889999999999875220 1234566
Q ss_pred CCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHH--HhhcCCccEEeccCCCCChhhHHHH
Q 006842 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA--LLENSTIRSLHLNGNYGGALGANAL 322 (629)
Q Consensus 245 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~--l~~~~~L~~L~L~~n~i~~~~~~~l 322 (629)
+++|++|+|++|.++.. .+..+..+++|++|+|++|.+++. ++.. +..+++|++|++++|.++.....
T Consensus 78 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 147 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQL----ETGAFNGLANLEVLTLTQCNLDGA----VLSGNFFKPLTSLEMLVLRDNNIKKIQPA-- 147 (455)
T ss_dssp CTTCCEEECTTCTTCEE----CTTTTTTCTTCCEEECTTSCCBTH----HHHSSTTTTCTTCCEEECCSSBCCSCCCC--
T ss_pred cccCCEEeCCCCccCcc----ChhhccCcccCCEEeCCCCCCCcc----ccCcccccCcccCCEEECCCCccCccCcc--
Confidence 79999999999999875 244566779999999999999742 2333 67789999999999998876432
Q ss_pred HHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHH----HHHHHcCCCccEEEccCCC
Q 006842 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV----AEYIKNCKSLLWINLYMND 398 (629)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l----~~~l~~~~~L~~L~Ls~n~ 398 (629)
..+..+++|++|++++|.++......+.. + ...+|+.|++++|.+.......+ ...+..+++|++|++++|.
T Consensus 148 -~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 148 -SFFLNMRRFHVLDLTFNKVKSICEEDLLN-F--QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp -GGGGGCTTCCEEECTTCCBSCCCTTTSGG-G--TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred -cccCCCCcccEEeCCCCcccccChhhhhc-c--ccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 12678999999999999987643322211 1 12479999999999887421111 1113356789999999999
Q ss_pred CChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHH------HHHHhh--cCCcccEEECcCCCCChhHHHHHHHHHhcC
Q 006842 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA------IARVLK--DNSVITSLDLAYNPIGADGAKALSEVLKFH 470 (629)
Q Consensus 399 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~------l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 470 (629)
+++.....+...+ ..++|+.|++++|.+....... ....+. ..++|++|++++|.+....... +..+
T Consensus 224 l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l 298 (455)
T 3v47_A 224 FKESMAKRFFDAI-AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV----FSHF 298 (455)
T ss_dssp CCHHHHHHHHHHT-TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT----TTTC
T ss_pred ccccchhhhhccc-cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh----cccC
Confidence 9988555554432 2489999999998544311000 000011 2368999999999998654333 4567
Q ss_pred CCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHH
Q 006842 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKC 550 (629)
Q Consensus 471 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 550 (629)
++|++|+|++|.++...+..+.. +++|++|+|++|.+++. .+..|..+++|+.|++++|++++..
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~----l~~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~Ls~N~l~~~~- 363 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWG----LTHLLKLNLSQNFLGSI----------DSRMFENLDKLEVLDLSYNHIRALG- 363 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT----CTTCCEEECCSSCCCEE----------CGGGGTTCTTCCEEECCSSCCCEEC-
T ss_pred CCCCEEECCCCcccccChhHhcC----cccCCEEECCCCccCCc----------ChhHhcCcccCCEEECCCCcccccC-
Confidence 89999999999998776555544 49999999999999887 6778899999999999999998752
Q ss_pred HHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHH
Q 006842 551 LAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 607 (629)
Q Consensus 551 l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~ 607 (629)
+..+.. .++|++|+|++|+|++..+..+... ++|++|++++|++++..+
T Consensus 364 -~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 364 -DQSFLG-LPNLKELALDTNQLKSVPDGIFDRL------TSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp -TTTTTT-CTTCCEEECCSSCCSCCCTTTTTTC------TTCCEEECCSSCBCCCTT
T ss_pred -hhhccc-cccccEEECCCCccccCCHhHhccC------CcccEEEccCCCcccCCC
Confidence 334443 3899999999999998665544333 579999999999998665
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=5e-30 Score=274.50 Aligned_cols=326 Identities=21% Similarity=0.214 Sum_probs=269.9
Q ss_pred HHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHH
Q 006842 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (629)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (629)
+..+++|++|+|++|.+++.. . +..+++|++|++++|.++.... +..+++|++|++++|.+++..
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~--- 128 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDIT-----P-LKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITDID--- 128 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCG---
T ss_pred hhhhcCCCEEECCCCccCCch-----h-hhccccCCEEECCCCccccChh------hcCCCCCCEEECCCCCCCCCh---
Confidence 347899999999999998752 2 7888999999999999886532 568899999999999998753
Q ss_pred HHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChh
Q 006842 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (629)
Q Consensus 238 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 317 (629)
.+..+++|++|++++|.+++.. .+..+++|++|++++ .+... ..+..+++|++|++++|.++..
T Consensus 129 ---~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~-~~~~~------~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 129 ---PLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGN-QVTDL------KPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp ---GGTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEE-SCCCC------GGGTTCTTCCEEECCSSCCCCC
T ss_pred ---HHcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCC-cccCc------hhhccCCCCCEEECcCCcCCCC
Confidence 1677899999999999998742 267789999999974 44332 1266889999999999999876
Q ss_pred hHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCC
Q 006842 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (629)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (629)
+ .+..+++|++|++++|.+++... + ..+++|+.|++++|.+++. ..+..+++|++|++++|
T Consensus 193 ~------~l~~l~~L~~L~l~~n~l~~~~~--~-----~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 193 S------VLAKLTNLESLIATNNQISDITP--L-----GILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANN 253 (466)
T ss_dssp G------GGGGCTTCSEEECCSSCCCCCGG--G-----GGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS
T ss_pred h------hhccCCCCCEEEecCCccccccc--c-----cccCCCCEEECCCCCcccc------hhhhcCCCCCEEECCCC
Confidence 4 36789999999999999987432 1 3567899999999999985 34788999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEe
Q 006842 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK 477 (629)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~ 477 (629)
.+++. . .+..+++|++|++++|.++... . +..+++|++|++++|.+.+... +..+++|+.|+
T Consensus 254 ~l~~~-----~-~~~~l~~L~~L~l~~n~l~~~~-----~-~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~ 315 (466)
T 1o6v_A 254 QISNL-----A-PLSGLTKLTELKLGANQISNIS-----P-LAGLTALTNLELNENQLEDISP------ISNLKNLTYLT 315 (466)
T ss_dssp CCCCC-----G-GGTTCTTCSEEECCSSCCCCCG-----G-GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEE
T ss_pred ccccc-----h-hhhcCCCCCEEECCCCccCccc-----c-ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEE
Confidence 99875 2 2778999999999999998742 2 6778999999999999987543 56789999999
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhh
Q 006842 478 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKV 557 (629)
Q Consensus 478 L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~ 557 (629)
+++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+ +..
T Consensus 316 L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~------------~~l~~l~~L~~L~l~~n~l~~~~~----~~~ 373 (466)
T 1o6v_A 316 LYFNNISDISP------VSSLTKLQRLFFYNNKVSDV------------SSLANLTNINWLSAGHNQISDLTP----LAN 373 (466)
T ss_dssp CCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC------------GGGTTCTTCCEEECCSSCCCBCGG----GTT
T ss_pred CcCCcCCCchh------hccCccCCEeECCCCccCCc------------hhhccCCCCCEEeCCCCccCccch----hhc
Confidence 99999987654 45669999999999999876 467889999999999999998754 332
Q ss_pred hhcccceeecCCCCCCc
Q 006842 558 VNEALTSIDLAFNEIRD 574 (629)
Q Consensus 558 ~~~~L~~LdLs~N~i~~ 574 (629)
.++|++|++++|.+++
T Consensus 374 -l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 374 -LTRITQLGLNDQAWTN 389 (466)
T ss_dssp -CTTCCEEECCCEEEEC
T ss_pred -CCCCCEEeccCCcccC
Confidence 3889999999999987
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.9e-34 Score=315.94 Aligned_cols=384 Identities=13% Similarity=0.095 Sum_probs=192.3
Q ss_pred hcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHH
Q 006842 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (629)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (629)
.+++|++|+|++|.++... +..|..+++|++|+|++|.++..... .+..+++|++|++++|.++.....
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~----~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~--- 118 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENF--- 118 (570)
T ss_dssp TCSSCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTC---
T ss_pred CCCCceEEECCCCcCCccC----cccccCchhCCEEeCcCCcCCccCHh----hhcCccccccccccccccccCCCc---
Confidence 5666777777777665532 23455566777777777766544222 234556677777776666543211
Q ss_pred HHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCc----cEEeccCCCCC
Q 006842 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI----RSLHLNGNYGG 315 (629)
Q Consensus 240 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L----~~L~L~~n~i~ 315 (629)
.+..+++|++|++++|.++... ++..+.++++|++|++++|.++.... ..+..+++| +.|++++|.++
T Consensus 119 -~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 119 -PIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp -SCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECTTSCCCEECG----GGGHHHHTCTTCCCEEECTTCCCC
T ss_pred -cccccccccEEecCCCccceec---ChhhhcccCCCCEEeCcCCccceecH----HHccchhccchhhhhcccCCCCce
Confidence 1344566677777666665411 23334555666677776666654321 112222333 44555555443
Q ss_pred hhhHHH--------------------------------------------------------------------------
Q 006842 316 ALGANA-------------------------------------------------------------------------- 321 (629)
Q Consensus 316 ~~~~~~-------------------------------------------------------------------------- 321 (629)
......
T Consensus 191 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 270 (570)
T 2z63_A 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270 (570)
T ss_dssp EECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEE
T ss_pred ecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhh
Confidence 322110
Q ss_pred ---HHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHH----------------
Q 006842 322 ---LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY---------------- 382 (629)
Q Consensus 322 ---l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~---------------- 382 (629)
.+..+..+++|++|++++|.++. ++..+. .. +|++|++++|.+... +..
T Consensus 271 ~~~~~~~~~~l~~L~~L~l~~~~l~~-----l~~~~~-~~-~L~~L~l~~n~~~~l-----~~~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 271 LDDIIDLFNCLTNVSSFSLVSVTIER-----VKDFSY-NF-GWQHLELVNCKFGQF-----PTLKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp ESCSTTTTGGGTTCSEEEEESCEECS-----CCBCCS-CC-CCSEEEEESCBCSSC-----CBCBCSSCCEEEEESCBSC
T ss_pred hhhchhhhcCcCcccEEEecCccchh-----hhhhhc-cC-CccEEeeccCccccc-----CcccccccCEEeCcCCccc
Confidence 00122334555555555555443 121111 22 455555555544431 110
Q ss_pred ----HHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChh
Q 006842 383 ----IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (629)
Q Consensus 383 ----l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (629)
...+++|++|++++|.++..+ ..+..+..+++|++|++++|.++.. +..+..+++|++|++++|.+...
T Consensus 339 ~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 339 NAFSEVDLPSLEFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVITM-----SSNFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEE--EEEHHHHTCSCCCEEECCSCSEEEE-----EEEEETCTTCCEEECTTSEEESC
T ss_pred cccccccCCCCCEEeCcCCccCccc--cccccccccCccCEEECCCCccccc-----cccccccCCCCEEEccCCccccc
Confidence 023444555555555444310 0012333445555555555544432 11134445555555555544322
Q ss_pred HHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCc-cccccCCCchhhhHHHHhhhhhhh
Q 006842 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD-EVCSGCNGLSFFHSAIYSLKHMLF 537 (629)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~-~~~~~~~~l~~~~~~~~~l~~L~~ 537 (629)
... ..+..+++|++|++++|.+....+..+ ..+++|++|++++|.+.+ . .|..+..+++|+.
T Consensus 412 ~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~----------~p~~~~~l~~L~~ 474 (570)
T 2z63_A 412 SEF---SVFLSLRNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMAGNSFQENF----------LPDIFTELRNLTF 474 (570)
T ss_dssp TTS---CTTTTCTTCCEEECTTSCCEECCTTTT----TTCTTCCEEECTTCEEGGGE----------ECSCCTTCTTCCE
T ss_pred cch---hhhhcCCCCCEEeCcCCcccccchhhh----hcCCcCcEEECcCCcCcccc----------chhhhhcccCCCE
Confidence 110 112334555555555555544322222 223556666666665542 2 3456667777888
Q ss_pred hhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHH
Q 006842 538 YSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 607 (629)
Q Consensus 538 L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~ 607 (629)
|++++|++++.. +..+.. +++|++|+|++|++++..+..+... ++|++|++++|++++..+
T Consensus 475 L~l~~n~l~~~~--~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 475 LDLSQCQLEQLS--PTAFNS-LSSLQVLNMASNQLKSVPDGIFDRL------TSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EECTTSCCCEEC--TTTTTT-CTTCCEEECCSSCCSCCCTTTTTTC------TTCCEEECCSSCBCCCTT
T ss_pred EECCCCccccCC--hhhhhc-ccCCCEEeCCCCcCCCCCHHHhhcc------cCCcEEEecCCcccCCCc
Confidence 888888777642 233332 2678888888888777655544333 467888888887776433
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=7.4e-30 Score=262.48 Aligned_cols=285 Identities=22% Similarity=0.249 Sum_probs=193.0
Q ss_pred hcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHH
Q 006842 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (629)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (629)
.+++|++|+++++.+.+. ..+..+++|++|++++|.+++... +..+++|++|++++|.+++.
T Consensus 42 ~l~~L~~L~l~~~~i~~~------~~~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~------ 103 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------ 103 (347)
T ss_dssp HHTTCSEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------
T ss_pred hcccccEEEEeCCccccc------hhhhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCc------
Confidence 578899999999988763 236778899999999998876532 56778899999998888764
Q ss_pred HHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhH
Q 006842 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (629)
Q Consensus 240 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (629)
..+..+++|++|++++|.+++... +..+++|++|++++|..... ...+..+++|++|++++|.+.....
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSD-----LSPLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCC-----CGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred hHHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccc-----ccchhhCCCCcEEEecCCCcCCchh
Confidence 235667888888888888876422 55678888888888843211 1125567778888888887766543
Q ss_pred HHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCC
Q 006842 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (629)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (629)
+..+++|++|++++|.+++... + ..+++|+.|++++|.++... . +..+++|++|++++|.+
T Consensus 173 ------~~~l~~L~~L~l~~n~l~~~~~------~-~~l~~L~~L~l~~n~l~~~~-----~-~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 173 ------IANLTDLYSLSLNYNQIEDISP------L-ASLTSLHYFTAYVNQITDIT-----P-VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp ------GGGCTTCSEEECTTSCCCCCGG------G-GGCTTCCEEECCSSCCCCCG-----G-GGGCTTCCEEECCSSCC
T ss_pred ------hccCCCCCEEEccCCccccccc------c-cCCCccceeecccCCCCCCc-----h-hhcCCcCCEEEccCCcc
Confidence 5567778888887777765321 1 34556777777777777641 1 56677777777777777
Q ss_pred ChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEecc
Q 006842 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (629)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (629)
++. +. +..+++|++|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 234 ~~~-----~~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 234 TDL-----SP-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLN 295 (347)
T ss_dssp CCC-----GG-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECC
T ss_pred CCC-----cc-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECc
Confidence 663 11 55667777777777777653 2355567777777777776653 123455666677776
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
+|.++...+..+..+ ++|++|++++|.+++.
T Consensus 296 ~n~l~~~~~~~l~~l----~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGL----TNLTTLFLSQNHITDI 326 (347)
T ss_dssp SSCCCGGGHHHHHTC----TTCSEEECCSSSCCCC
T ss_pred CCcCCCcChhHhhcc----ccCCEEEccCCccccc
Confidence 666666555444433 6666666666666655
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.6e-32 Score=301.15 Aligned_cols=394 Identities=15% Similarity=0.126 Sum_probs=206.4
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHH
Q 006842 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (629)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (629)
+++++|+|++|.++... +..+..+++|++|+|++|.|+..... .+..+++|++|+|++|.|+... ..
T Consensus 52 ~~L~~L~Ls~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~lp-----~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELR----MPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQNIS-----CC 118 (562)
T ss_dssp TTCCEEECCSSCCCCCC----GGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCCEEC-----SC
T ss_pred CCcCEEECCCCCccccC----hhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCCccC-----cc
Confidence 67778888888776542 34566677788888888877654332 2345677888888888776432 11
Q ss_pred HhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCc--cEEeccCCCC--Chh
Q 006842 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG--GAL 317 (629)
Q Consensus 242 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L--~~L~L~~n~i--~~~ 317 (629)
.+++|++|++++|.++... ++..+.++++|++|++++|.++... +..+++| ++|++++|.+ +..
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~---~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLP---VCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCC---CCGGGGGCTTCCEEEEECSBCCTTT-------TGGGTTSCEEEEEEEESSCCCCSS
T ss_pred --ccccCCEEECCCCCccccC---chHhhcccCcccEEecCCCccccCc-------hhhhhhceeeEEEeeccccccccc
Confidence 4577888888888776521 1234556677888888887776422 2334444 7788877776 332
Q ss_pred hHHHHHH----------------------HhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchh
Q 006842 318 GANALAK----------------------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 375 (629)
Q Consensus 318 ~~~~l~~----------------------~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 375 (629)
....+.. .+..+++|+.|++++|...-..+......+. ..++|+.|++.++.++...
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~-~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT-RGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH-SCSSCEEEEEEEEEECHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHh-ccCcceEEEecCCcCcHHH
Confidence 2111100 0112345556666665433222332333332 3456666777666666655
Q ss_pred HHHHHHHHHcCCCccEEEccCCCCChHH---H-------------------------HHHHHHHhcCCCccEEEeeCCCC
Q 006842 376 AFHVAEYIKNCKSLLWINLYMNDIGDEG---A-------------------------EKIADALKQNRTITTIDLGGNNI 427 (629)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~---~-------------------------~~l~~~l~~~~~L~~L~Ls~n~i 427 (629)
...++..+. .++|++|++++|.+++.- . ..+...+ ...+|++|++++|.+
T Consensus 266 ~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~-~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 266 SVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH-HTCCCSEEEEESSCC
T ss_pred HHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhh-ccCcceEEEccCCCc
Confidence 544444332 347777777777655210 0 0011111 112233333333333
Q ss_pred CHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcc
Q 006842 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (629)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 507 (629)
.... ....+++|++|++++|.+++..+ ..+..+++|++|++++|.++... .++..+..+++|++|+++
T Consensus 344 ~~~~------~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 344 IHMV------CPPSPSSFTFLNFTQNVFTDSVF----QGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CCCC------CCSSCCCCCEEECCSSCCCTTTT----TTCCSCSSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEEECT
T ss_pred cccc------CccCCCCceEEECCCCccccchh----hhhcccCCCCEEECCCCCcCCcc--cchhhhcCCCCCCEEECC
Confidence 2210 01344566666666666654322 12234456666666666665421 111223334666666666
Q ss_pred cCCCCcccccc-CCCchh-----------hhHHHHhh-hhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCc
Q 006842 508 ANGLRDEVCSG-CNGLSF-----------FHSAIYSL-KHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRD 574 (629)
Q Consensus 508 ~N~l~~~~~~~-~~~l~~-----------~~~~~~~l-~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~ 574 (629)
+|++.+.+|.. +..+.. ....+..+ ++|+.|++++|+++. ++..+. ..++|++|||++|+|++
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~---ip~~~~-~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS---IPKDVT-HLQALQELNVASNQLKS 487 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC---CCTTTT-SSCCCSEEECCSSCCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc---cChhhc-CCCCCCEEECCCCCCCC
Confidence 66665532221 100000 00111122 577777777777765 333333 23677888888887776
Q ss_pred hhHHHHHHHHhcCCccceeeeeccCCccchh
Q 006842 575 DGAFAIAQALKANEDVAVTSLNLANNFLTKF 605 (629)
Q Consensus 575 ~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~ 605 (629)
..+..+... ++|++|++++|+++..
T Consensus 488 l~~~~~~~l------~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 488 VPDGVFDRL------TSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCTTSTTTC------TTCCCEECCSCCBCCC
T ss_pred CCHHHHhcC------CCCCEEEecCCCcCCC
Confidence 332223222 3677888888877753
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.1e-29 Score=259.12 Aligned_cols=282 Identities=23% Similarity=0.253 Sum_probs=187.9
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHH
Q 006842 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (629)
Q Consensus 189 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 268 (629)
+++|++|++++|.+++.. .+..+++|++|++++|.+++... +..+++|++|++++|.+++. .
T Consensus 43 l~~L~~L~l~~~~i~~~~------~~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~------~ 104 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ------GIEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------S 104 (347)
T ss_dssp HTTCSEEECCSSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------G
T ss_pred cccccEEEEeCCccccch------hhhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCc------h
Confidence 378899999988876542 24567888888888888876531 56678888888888888764 2
Q ss_pred HHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCC-CChhhHHHHHHHhcCCCCccEEEccCCCCChhHH
Q 006842 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGNSIGDEGI 347 (629)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 347 (629)
.+..+++|++|++++|.+++... +..+++|++|++++|. +...+ .+..+++|++|++++|.+.+...
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDLS------PLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCCG------GGTTCTTCCEEECCSSCCCCCGG
T ss_pred HHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccccc------chhhCCCCcEEEecCCCcCCchh
Confidence 35677888888888888865321 5567888888888884 33322 25677788888888887766322
Q ss_pred HHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCC
Q 006842 348 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (629)
Q Consensus 348 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 427 (629)
+ ..+++|++|++++|.+++. +. +..+++|++|++++|.+++.. . +..+++|++|++++|.+
T Consensus 173 ------~-~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~~-----~-~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 173 ------I-ANLTDLYSLSLNYNQIEDI-----SP-LASLTSLHYFTAYVNQITDIT-----P-VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp ------G-GGCTTCSEEECTTSCCCCC-----GG-GGGCTTCCEEECCSSCCCCCG-----G-GGGCTTCCEEECCSSCC
T ss_pred ------h-ccCCCCCEEEccCCccccc-----cc-ccCCCccceeecccCCCCCCc-----h-hhcCCcCCEEEccCCcc
Confidence 1 3455788888888877764 12 567777888888877777641 1 56677777777777777
Q ss_pred CHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcc
Q 006842 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (629)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 507 (629)
+.... +..+++|++|++++|.+++. ..+..+++|++|++++|.++... .+..+++|++|+++
T Consensus 234 ~~~~~------~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 234 TDLSP------LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDIS------VLNNLSQLNSLFLN 295 (347)
T ss_dssp CCCGG------GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECC
T ss_pred CCCcc------hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCCh------hhcCCCCCCEEECc
Confidence 76421 55667777777777777653 12455567777777777766541 23445777777777
Q ss_pred cCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchh
Q 006842 508 ANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (629)
Q Consensus 508 ~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 547 (629)
+|.+.+. .+..+..+++|+.|++++|.+++
T Consensus 296 ~n~l~~~----------~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 296 NNQLGNE----------DMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp SSCCCGG----------GHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCcCCCc----------ChhHhhccccCCEEEccCCcccc
Confidence 7777655 34444444444444444444444
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.9e-32 Score=299.00 Aligned_cols=369 Identities=16% Similarity=0.098 Sum_probs=257.9
Q ss_pred HHHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHH
Q 006842 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (629)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 236 (629)
.+..+++|++|+|++|.++... ++.|..+++|++|+|++|.|+..... .+++|++|+|++|.++...
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~lp~~-------~l~~L~~L~Ls~N~l~~l~-- 137 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLD----FHVFLFNQDLEYLDVSHNRLQNISCC-------PMASLRHLDLSFNDFDVLP-- 137 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEEC----TTTTTTCTTCCEEECTTSCCCEECSC-------CCTTCSEEECCSSCCSBCC--
T ss_pred hhccCCCccEEECCCCCCCcCC----HHHhCCCCCCCEEECCCCcCCccCcc-------ccccCCEEECCCCCccccC--
Confidence 3567899999999999998752 45677889999999999999854221 5788999999999998642
Q ss_pred HHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCc--cEEEeccCCC--ChhhHHHHHH----------------
Q 006842 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL--RVLELNNNMI--DYSGFTSLAE---------------- 296 (629)
Q Consensus 237 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L--~~L~L~~n~i--~~~~~~~l~~---------------- 296 (629)
++..+..+++|++|++++|.++... +..+++| ++|++++|.+ +......+..
T Consensus 138 -~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 209 (562)
T 3a79_B 138 -VCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209 (562)
T ss_dssp -CCGGGGGCTTCCEEEEECSBCCTTT-------TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCC
T ss_pred -chHhhcccCcccEEecCCCccccCc-------hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccch
Confidence 2245677899999999999998642 2333555 9999999988 3221111100
Q ss_pred ------HHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCC
Q 006842 297 ------ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370 (629)
Q Consensus 297 ------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 370 (629)
.+..+++|+.|++++|.............+..++.|++|++.++.+++..+..+...+.. ++|++|++++|.
T Consensus 210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~--~~L~~L~l~~n~ 287 (562)
T 3a79_B 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP--RPVEYLNIYNLT 287 (562)
T ss_dssp CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT--SSEEEEEEEEEE
T ss_pred hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc--ccccEEEEeccE
Confidence 112356788899998864433344445678899999999999999998887777766543 389999999998
Q ss_pred CCchh---H-------------------------HHHHHHH---------------------HcCCCccEEEccCCCCCh
Q 006842 371 ISAKG---A-------------------------FHVAEYI---------------------KNCKSLLWINLYMNDIGD 401 (629)
Q Consensus 371 l~~~~---~-------------------------~~l~~~l---------------------~~~~~L~~L~Ls~n~l~~ 401 (629)
++..- . ..+...+ ..+++|++|++++|.+++
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc
Confidence 77310 0 1111111 456677777777777776
Q ss_pred HHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCCh-hHHHHHHHHHhcCCCccEEeccC
Q 006842 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA-DGAKALSEVLKFHGNINTLKLGW 480 (629)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~L~~L~L~~ 480 (629)
. ++..+..+++|++|++++|+++... .++..+..+++|++|++++|.++. .... .+..+++|++|++++
T Consensus 368 ~----~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 368 S----VFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVSLNSLNSHAYDR----TCAWAESILVLNLSS 437 (562)
T ss_dssp T----TTTTCCSCSSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEEECTTSCCBSCCSSC----CCCCCTTCCEEECCS
T ss_pred c----hhhhhcccCCCCEEECCCCCcCCcc--cchhhhcCCCCCCEEECCCCcCCCccChh----hhcCcccCCEEECCC
Confidence 4 4455666777788888887777521 144556667778888888877764 2111 123456778888888
Q ss_pred CCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhc
Q 006842 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNE 560 (629)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~ 560 (629)
|.++...+..+. ++|++|+|++|+++.. |..+..+++|+.|++++|+++++ +.......+
T Consensus 438 n~l~~~~~~~l~------~~L~~L~L~~N~l~~i-----------p~~~~~l~~L~~L~L~~N~l~~l---~~~~~~~l~ 497 (562)
T 3a79_B 438 NMLTGSVFRCLP------PKVKVLDLHNNRIMSI-----------PKDVTHLQALQELNVASNQLKSV---PDGVFDRLT 497 (562)
T ss_dssp SCCCGGGGSSCC------TTCSEEECCSSCCCCC-----------CTTTTSSCCCSEEECCSSCCCCC---CTTSTTTCT
T ss_pred CCCCcchhhhhc------CcCCEEECCCCcCccc-----------ChhhcCCCCCCEEECCCCCCCCC---CHHHHhcCC
Confidence 877654322211 5788888888877744 55566999999999999999974 333222338
Q ss_pred ccceeecCCCCCCchhHH
Q 006842 561 ALTSIDLAFNEIRDDGAF 578 (629)
Q Consensus 561 ~L~~LdLs~N~i~~~~~~ 578 (629)
+|++|++++|.+....+.
T Consensus 498 ~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 498 SLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TCCCEECCSCCBCCCHHH
T ss_pred CCCEEEecCCCcCCCcch
Confidence 899999999999875553
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.3e-32 Score=302.89 Aligned_cols=367 Identities=16% Similarity=0.136 Sum_probs=234.6
Q ss_pred HhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHH
Q 006842 159 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (629)
Q Consensus 159 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 238 (629)
..+++|++|+|++|.++... +..|..+++|++|++++|.++...... +..+++|++|++++|.++... +
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n~l~~~~---l 141 (570)
T 2z63_A 73 QSLSHLSTLILTGNPIQSLA----LGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFK---L 141 (570)
T ss_dssp TTCTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTSCCCCSTTCS----CTTCTTCCEEECCSSCCCCCC---C
T ss_pred cCchhCCEEeCcCCcCCccC----HhhhcCccccccccccccccccCCCcc----ccccccccEEecCCCccceec---C
Confidence 35677777777777765532 234556677777777777665432211 345666777777777665421 2
Q ss_pred HHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCc----cEEEeccCCCChhh-----------------------H
Q 006842 239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL----RVLELNNNMIDYSG-----------------------F 291 (629)
Q Consensus 239 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L----~~L~L~~n~i~~~~-----------------------~ 291 (629)
+..+..+++|++|++++|.++......+... ++| ++|++++|.++... +
T Consensus 142 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 217 (570)
T 2z63_A 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL----HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217 (570)
T ss_dssp CGGGGGCTTCCEEECTTSCCCEECGGGGHHH----HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHH
T ss_pred hhhhcccCCCCEEeCcCCccceecHHHccch----hccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccch
Confidence 2344556777777777776665432222221 222 34444444332110 0
Q ss_pred H------------------------------------------------------HHHHHHhhcCCccEEeccCCCCChh
Q 006842 292 T------------------------------------------------------SLAEALLENSTIRSLHLNGNYGGAL 317 (629)
Q Consensus 292 ~------------------------------------------------------~l~~~l~~~~~L~~L~L~~n~i~~~ 317 (629)
. .++..+..+++|++|++++|.++.+
T Consensus 218 ~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 297 (570)
T 2z63_A 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297 (570)
T ss_dssp HHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSC
T ss_pred hhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhh
Confidence 0 0112233456677777777665543
Q ss_pred hHHHHHHHhcCCCCccEEEccCCCCChhHHHHHH--------------HhhccCCCCceEEEccCCCCCchhHHHHHHHH
Q 006842 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALM--------------SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383 (629)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~--------------~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 383 (629)
+ ..+..+ +|++|++++|.++......+. ..-...+++|++|++++|.++..+. .+..+
T Consensus 298 ~-----~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~ 369 (570)
T 2z63_A 298 K-----DFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC--CSQSD 369 (570)
T ss_dssp C-----BCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE--EEHHH
T ss_pred h-----hhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc--ccccc
Confidence 2 223333 555555555544321000000 0000345689999999999987421 14567
Q ss_pred HcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHH
Q 006842 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (629)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (629)
..+++|++|++++|.+... +..+..+++|++|++++|.++.... ...+..+++|++|++++|.+......
T Consensus 370 ~~~~~L~~L~l~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~-- 439 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITM-----SSNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNG-- 439 (570)
T ss_dssp HTCSCCCEEECCSCSEEEE-----EEEEETCTTCCEEECTTSEEESCTT---SCTTTTCTTCCEEECTTSCCEECCTT--
T ss_pred cccCccCEEECCCCccccc-----cccccccCCCCEEEccCCccccccc---hhhhhcCCCCCEEeCcCCcccccchh--
Confidence 8899999999999998773 3336778999999999998876311 12466789999999999998765332
Q ss_pred HHHHhcCCCccEEeccCCCCCH-HHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhh
Q 006842 464 SEVLKFHGNINTLKLGWCQIGA-SGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCI 542 (629)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~ 542 (629)
.+..+++|++|++++|.+++ ..+ ..+..+++|++|++++|++++. .+..+..+++|+.|++++
T Consensus 440 --~~~~l~~L~~L~l~~n~l~~~~~p----~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 440 --IFNGLSSLEVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQCQLEQL----------SPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp --TTTTCTTCCEEECTTCEEGGGEEC----SCCTTCTTCCEEECTTSCCCEE----------CTTTTTTCTTCCEEECCS
T ss_pred --hhhcCCcCcEEECcCCcCccccch----hhhhcccCCCEEECCCCccccC----------ChhhhhcccCCCEEeCCC
Confidence 34567899999999999863 222 3345569999999999999988 677888999999999999
Q ss_pred hcchhhHHHHHHHhhhhcccceeecCCCCCCchhH
Q 006842 543 NYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGA 577 (629)
Q Consensus 543 N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~ 577 (629)
|++++.. +..+.. .++|++|++++|.++...+
T Consensus 504 n~l~~~~--~~~~~~-l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 504 NQLKSVP--DGIFDR-LTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp SCCSCCC--TTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred CcCCCCC--HHHhhc-ccCCcEEEecCCcccCCCc
Confidence 9999863 233333 3899999999999988655
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=9.8e-33 Score=316.54 Aligned_cols=399 Identities=19% Similarity=0.152 Sum_probs=246.6
Q ss_pred HHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHH
Q 006842 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (629)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (629)
+..+++|++|+|++|.+... .++.+..+++|++|+|++|.+++..... ..+..+++|++|+|++|.++...
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~--- 139 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLY--- 139 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEE----CTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCC---
T ss_pred hcCCCCCCEEECCCCcCccc----CHhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccc---
Confidence 34677888888888887654 2456677788888888888776421111 12456677888888888776532
Q ss_pred HHHHHhhCCCCCEEEeeccCCChHHHHHHHHHH----------------------hcCC------CccEEEeccCCCChh
Q 006842 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELL----------------------KNNS------ILRVLELNNNMIDYS 289 (629)
Q Consensus 238 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l----------------------~~~~------~L~~L~L~~n~i~~~ 289 (629)
.+..+..+++|++|+|++|.++......+...- ..++ .|++|++++|.++..
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 219 (844)
T 3j0a_A 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219 (844)
T ss_dssp CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT
T ss_pred cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchh
Confidence 123455677888888888877654333333221 0111 266777777755432
Q ss_pred hHHHHHHH--------------------------------Hhh--cCCccEEeccCCCCChhhHHHHHHHhcCCCCccEE
Q 006842 290 GFTSLAEA--------------------------------LLE--NSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335 (629)
Q Consensus 290 ~~~~l~~~--------------------------------l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 335 (629)
....+... +.. .++|+.|++++|.++.... ..+..+++|++|
T Consensus 220 ~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L 295 (844)
T 3j0a_A 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS----RVFETLKDLKVL 295 (844)
T ss_dssp TTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS----CCSSSCCCCCEE
T ss_pred HHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh----hhhhcCCCCCEE
Confidence 22211111 111 2567788888887766543 346678888888
Q ss_pred EccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCC
Q 006842 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNR 415 (629)
Q Consensus 336 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 415 (629)
+|++|.++......+ ..+++|++|++++|.++.. .+..+..+++|++|++++|.++.. .+..+..++
T Consensus 296 ~L~~n~i~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~ 362 (844)
T 3j0a_A 296 NLAYNKINKIADEAF-----YGLDNLQVLNLSYNLLGEL----YSSNFYGLPKVAYIDLQKNHIAII----QDQTFKFLE 362 (844)
T ss_dssp EEESCCCCEECTTTT-----TTCSSCCEEEEESCCCSCC----CSCSCSSCTTCCEEECCSCCCCCC----CSSCSCSCC
T ss_pred ECCCCcCCCCChHHh-----cCCCCCCEEECCCCCCCcc----CHHHhcCCCCCCEEECCCCCCCcc----ChhhhcCCC
Confidence 888888876422222 4566788888888888764 345567788888888888877664 223456677
Q ss_pred CccEEEeeCCCCCHHHHHHHH-------------HHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCC
Q 006842 416 TITTIDLGGNNIHSKGASAIA-------------RVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (629)
Q Consensus 416 ~L~~L~Ls~n~i~~~~~~~l~-------------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (629)
+|++|++++|.++.... ++ ..-....+++.|++++|.+...... ..+..+++|++|+|++|.
T Consensus 363 ~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~---~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 363 KLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL---YFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CCCEEEEETCCSCCCSS--CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTH---HHHTTCTTCCEEEEESCC
T ss_pred CCCEEECCCCCCCcccC--CCCcchhccCCCCcccccccccccceeecccCccccCchh---hhhhcCCccceeeCCCCc
Confidence 88888888887764210 00 0000012344445555555443221 123456888888888888
Q ss_pred CCHHHHHHHHHHHhcCCCcCEEEcccCCCCccc-----cccCCCc-------------hh-hhHHHHhhhhhhhhhhhhh
Q 006842 483 IGASGAEFVADMLRYNNTISILDLRANGLRDEV-----CSGCNGL-------------SF-FHSAIYSLKHMLFYSLCIN 543 (629)
Q Consensus 483 i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~-----~~~~~~l-------------~~-~~~~~~~l~~L~~L~Ls~N 543 (629)
++...... .+..+++|++|+|++|.+.... +..+..+ .. .+..|.++++|+.|+|++|
T Consensus 438 l~~~~~~~---~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 438 FSSCSGDQ---TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp CCCCCSSS---SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred cccccccc---ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence 76432211 1122367777777777765321 1111111 11 3556789999999999999
Q ss_pred cchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccch
Q 006842 544 YLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 604 (629)
Q Consensus 544 ~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 604 (629)
++++..+ ..+. ++|+.|||++|+|++..+..+ .+|+.|++++|++..
T Consensus 515 ~l~~l~~--~~~~---~~L~~L~Ls~N~l~~~~~~~~---------~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 515 RLTVLSH--NDLP---ANLEILDISRNQLLAPNPDVF---------VSLSVLDITHNKFIC 561 (844)
T ss_dssp CCSSCCC--CCCC---SCCCEEEEEEECCCCCCSCCC---------SSCCEEEEEEECCCC
T ss_pred CCCccCh--hhhh---ccccEEECCCCcCCCCChhHh---------CCcCEEEecCCCccc
Confidence 9997532 2222 789999999999999777654 369999999998765
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.9e-29 Score=267.97 Aligned_cols=346 Identities=17% Similarity=0.148 Sum_probs=241.0
Q ss_pred hcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHH
Q 006842 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (629)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (629)
.+++|++|++++|.+++. + .+..+++|++|++++|.++... +..+++|++|++++|.++...
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-----~-~l~~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~~~----- 101 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-----T-GIEKLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTNLD----- 101 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-----T-TGGGCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSCCC-----
T ss_pred HcCCCCEEEccCCCcccC-----h-hhcccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCceee-----
Confidence 679999999999999864 2 4778899999999999998752 567789999999999998752
Q ss_pred HHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCC-CCChhh
Q 006842 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN-YGGALG 318 (629)
Q Consensus 240 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~ 318 (629)
+..+++|++|++++|.++... +..+++|++|++++|.++.. .+..+++|++|++++| .++..+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~~ 165 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKLD 165 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCCC
T ss_pred --cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCcccccc
Confidence 566799999999999998741 56779999999999999753 2567899999999999 455442
Q ss_pred HHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCC
Q 006842 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398 (629)
Q Consensus 319 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 398 (629)
+..+++|++|++++|.++... ...+++|+.|++++|.++.. .+..+++|++|++++|+
T Consensus 166 -------~~~l~~L~~L~ls~n~l~~l~--------l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 166 -------VTPQTQLTTLDCSFNKITELD--------VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp -------CTTCTTCCEEECCSSCCCCCC--------CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSC
T ss_pred -------cccCCcCCEEECCCCccceec--------cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCc
Confidence 567899999999999998732 14567899999999999884 26788999999999999
Q ss_pred CChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEec
Q 006842 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (629)
Q Consensus 399 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 478 (629)
+++. + +..+++|++|++++|+++... +..+++|+.|++++|. |+.|++
T Consensus 224 l~~i-----p--~~~l~~L~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~------------------L~~L~l 271 (457)
T 3bz5_A 224 LTEI-----D--VTPLTQLTYFDCSVNPLTELD-------VSTLSKLTTLHCIQTD------------------LLEIDL 271 (457)
T ss_dssp CSCC-----C--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECTTCC------------------CSCCCC
T ss_pred cccc-----C--ccccCCCCEEEeeCCcCCCcC-------HHHCCCCCEEeccCCC------------------CCEEEC
Confidence 9883 3 677899999999999998742 4456778888777653 344555
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhh
Q 006842 479 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVV 558 (629)
Q Consensus 479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~ 558 (629)
++|.+....+ ...+++|+.|++++|...+.+|.....+..+. +.++++|+.|++++|++++.. +. .
T Consensus 272 ~~n~~~~~~~------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~--l~~~~~L~~L~L~~N~l~~l~-----l~-~ 337 (457)
T 3bz5_A 272 THNTQLIYFQ------AEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD-----VS-H 337 (457)
T ss_dssp TTCTTCCEEE------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCCEEECTTCCCSCCC-----CT-T
T ss_pred CCCccCCccc------ccccccCCEEECCCCcccceeccCCCcceEec--hhhcccCCEEECCCCcccccc-----cc-c
Confidence 5554322111 12335566666666655555444333333332 444555666666666665531 21 1
Q ss_pred hcccceeecCCCCCCchhHHHHHHH-HhcC------CccceeeeeccCCccchhHHHH
Q 006842 559 NEALTSIDLAFNEIRDDGAFAIAQA-LKAN------EDVAVTSLNLANNFLTKFGQSA 609 (629)
Q Consensus 559 ~~~L~~LdLs~N~i~~~~~~~l~~~-l~~~------~~~~L~~L~L~~N~i~~~~~~~ 609 (629)
+++|+.||+++|+|++.. .+... +..+ ....|..+++++|.+++..|..
T Consensus 338 l~~L~~L~l~~N~l~~l~--~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 338 NTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CTTCSEEECCSSCCCBCT--TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTT
T ss_pred CCcCcEEECCCCCCCCcc--ccccccccCCcEEecceeeecCccccccCcEEEEcChh
Confidence 255666666666665521 00000 0000 0135778888888888765544
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=2.1e-29 Score=263.40 Aligned_cols=266 Identities=17% Similarity=0.161 Sum_probs=145.3
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHH
Q 006842 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (629)
Q Consensus 189 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 268 (629)
..+++.|++++|.++......| ..+++|++|+|++|.+++.. ...+..+++|++|+|++|.++... +.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~----~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALL----DSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRYLP----PH 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHH----HHCCCCSEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred cCCceEEEecCCchhhCChhHh----cccccCcEEECCCCcccccC----hhhccCCCCcCEEECCCCCCCcCC----HH
Confidence 3677777777777665543333 34566777777777776542 123445577777777777776542 23
Q ss_pred HHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHH
Q 006842 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (629)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 348 (629)
.+..+++|++|++++|.++... ...+..+++|++|++++|.++.... ..+..+++|++|++++|.++..+.
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~- 182 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDL- 182 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBCCT----TTTSSCTTCCEEECCSSCCSBCCG-
T ss_pred HhcCCCCCCEEECCCCccCcCC----HHHhcCCCCCcEEECCCCccCccCh----hhccCCCCCCEEECCCCcCCcccc-
Confidence 3445566777777777665221 1123456667777777766655443 234556666666666666655321
Q ss_pred HHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCC
Q 006842 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (629)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 428 (629)
..+++|+.|++++|.++.. ...++|++|++++|.++.. +. ...++|++|++++|.++
T Consensus 183 -------~~l~~L~~L~l~~n~l~~~---------~~~~~L~~L~l~~n~l~~~-----~~--~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 183 -------SLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNLT 239 (390)
T ss_dssp -------GGCTTCSEEECCSSCCSEE---------ECCSSCSEEECCSSCCCEE-----EC--CCCSSCCEEECCSSCCC
T ss_pred -------ccccccceeeccccccccc---------CCCCcceEEECCCCeeeec-----cc--cccccccEEECCCCCCc
Confidence 2234566666666666552 2334566666666665542 11 12345666666666665
Q ss_pred HHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEccc
Q 006842 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508 (629)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 508 (629)
+. ..+..+++|++|++++|.++...+.. +..+++|++|+|++|.++.... ....+++|++|+|++
T Consensus 240 ~~------~~l~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~-----~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 240 DT------AWLLNYPGLVEVDLSYNELEKIMYHP----FVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSH 304 (390)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEESGG----GTTCSSCCEEECCSSCCCEEEC-----SSSCCTTCCEEECCS
T ss_pred cc------HHHcCCCCccEEECCCCcCCCcChhH----ccccccCCEEECCCCcCcccCc-----ccCCCCCCCEEECCC
Confidence 42 23445556666666666555432222 2333555555555555544211 112235555555555
Q ss_pred CCCCc
Q 006842 509 NGLRD 513 (629)
Q Consensus 509 N~l~~ 513 (629)
|++.+
T Consensus 305 n~l~~ 309 (390)
T 3o6n_A 305 NHLLH 309 (390)
T ss_dssp SCCCC
T ss_pred Cccee
Confidence 55543
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=6.5e-30 Score=274.71 Aligned_cols=303 Identities=18% Similarity=0.130 Sum_probs=171.4
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHH
Q 006842 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (629)
Q Consensus 190 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 269 (629)
++++.|+|++|.|+..... .+..+++|++|+|++|.|+... ...+..+++|++|+|++|.++.... ..
T Consensus 32 ~~l~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~ 99 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQD----EFASFPHLEELELNENIVSAVE----PGAFNNLFNLRTLGLRSNRLKLIPL----GV 99 (477)
T ss_dssp TTCSEEECCSSCCCEECTT----TTTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCSCCT----TS
T ss_pred CCCcEEECCCCccceECHh----HccCCCCCCEEECCCCccCEeC----hhhhhCCccCCEEECCCCcCCccCc----cc
Confidence 4566666666666543322 2334556666666666665432 2233445666666666666654321 12
Q ss_pred HhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHH
Q 006842 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (629)
Q Consensus 270 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 349 (629)
+..+++|++|+|++|.++.. .+..+..+++|++|++++|.++.... ..+..+++|++|++++|.++......
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVIL----LDYMFQDLYNLKSLEVGDNDLVYISH----RAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp STTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEEECCTTCCEECT----TSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred ccCCCCCCEEECCCCccccC----ChhHccccccCCEEECCCCccceeCh----hhccCCCCCCEEECCCCcCcccChhH
Confidence 34456666666666666532 12334456666666666666655443 23456666777777776666543332
Q ss_pred HHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCH
Q 006842 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (629)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 429 (629)
+ ..+++|+.|++++|.++.. .+..+..+++|++|++++|...+. ++.......+|++|++++|.++.
T Consensus 172 l-----~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 172 L-----SHLHGLIVLRLRHLNINAI----RDYSFKRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp H-----TTCTTCCEEEEESCCCCEE----CTTCSCSCTTCCEEEEECCTTCCE----ECTTTTTTCCCSEEEEESSCCCS
T ss_pred h-----cccCCCcEEeCCCCcCcEe----ChhhcccCcccceeeCCCCccccc----cCcccccCccccEEECcCCcccc
Confidence 3 3455667777777666654 223455666777777776644332 22223333467777777777665
Q ss_pred HHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccC
Q 006842 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509 (629)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N 509 (629)
... ..+..+++|++|+|++|.++...... +..+++|+.|+|++|.++...+..+. .+++|++|+|++|
T Consensus 239 ~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~N 306 (477)
T 2id5_A 239 VPY----LAVRHLVYLRFLNLSYNPISTIEGSM----LHELLRLQEIQLVGGQLAVVEPYAFR----GLNYLRVLNVSGN 306 (477)
T ss_dssp CCH----HHHTTCTTCCEEECCSSCCCEECTTS----CTTCTTCCEEECCSSCCSEECTTTBT----TCTTCCEEECCSS
T ss_pred cCH----HHhcCccccCeeECCCCcCCccChhh----ccccccCCEEECCCCccceECHHHhc----CcccCCEEECCCC
Confidence 321 23455577777777777766443322 23446677777777766655443333 3367777777777
Q ss_pred CCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchh
Q 006842 510 GLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (629)
Q Consensus 510 ~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 547 (629)
++++. .+..|..+++|+.|++++|.+..
T Consensus 307 ~l~~~----------~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 307 QLTTL----------EESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCSCC----------CGGGBSCGGGCCEEECCSSCEEC
T ss_pred cCcee----------CHhHcCCCcccCEEEccCCCccC
Confidence 77665 34455566666666666666653
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=9.4e-30 Score=273.47 Aligned_cols=321 Identities=16% Similarity=0.084 Sum_probs=238.8
Q ss_pred cEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhc
Q 006842 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN 272 (629)
Q Consensus 193 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 272 (629)
+.++.+++.++... .. -.+++++|+|++|.|+... ...+..+++|++|+|++|.++... +..+..
T Consensus 14 ~~v~c~~~~l~~ip-----~~--~~~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHRKRFVAVP-----EG--IPTETRLLDLGKNRIKTLN----QDEFASFPHLEELELNENIVSAVE----PGAFNN 78 (477)
T ss_dssp TEEECCSCCCSSCC-----SC--CCTTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECTTSCCCEEC----TTTTTT
T ss_pred CEEEeCCCCcCcCC-----CC--CCCCCcEEECCCCccceEC----HhHccCCCCCCEEECCCCccCEeC----hhhhhC
Confidence 46677766665432 11 1257999999999998753 344566799999999999998753 344567
Q ss_pred CCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHH
Q 006842 273 NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS 352 (629)
Q Consensus 273 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 352 (629)
+++|++|+|++|.++... ...+..+++|++|++++|.++.... ..+..+++|++|++++|.++......+
T Consensus 79 l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~-- 148 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIP----LGVFTGLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGDNDLVYISHRAF-- 148 (477)
T ss_dssp CTTCCEEECCSSCCCSCC----TTSSTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEEECCTTCCEECTTSS--
T ss_pred CccCCEEECCCCcCCccC----cccccCCCCCCEEECCCCccccCCh----hHccccccCCEEECCCCccceeChhhc--
Confidence 789999999999886432 2335578999999999999887644 456788999999999998876432222
Q ss_pred hhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHH
Q 006842 353 GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA 432 (629)
Q Consensus 353 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 432 (629)
..+++|++|++++|.++.. .+..+..+++|++|++++|.+... ....+..+++|++|++++|.+...
T Consensus 149 ---~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~-- 215 (477)
T 2id5_A 149 ---SGLNSLEQLTLEKCNLTSI----PTEALSHLHGLIVLRLRHLNINAI----RDYSFKRLYRLKVLEISHWPYLDT-- 215 (477)
T ss_dssp ---TTCTTCCEEEEESCCCSSC----CHHHHTTCTTCCEEEEESCCCCEE----CTTCSCSCTTCCEEEEECCTTCCE--
T ss_pred ---cCCCCCCEEECCCCcCccc----ChhHhcccCCCcEEeCCCCcCcEe----ChhhcccCcccceeeCCCCccccc--
Confidence 4667899999999999886 455678899999999999988774 334567788999999999865443
Q ss_pred HHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCC
Q 006842 433 SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (629)
Q Consensus 433 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 512 (629)
++.......+|++|++++|.++...... +..+++|++|+|++|.++......+ ..+++|++|+|++|++.
T Consensus 216 --~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 216 --MTPNCLYGLNLTSLSITHCNLTAVPYLA----VRHLVYLRFLNLSYNPISTIEGSML----HELLRLQEIQLVGGQLA 285 (477)
T ss_dssp --ECTTTTTTCCCSEEEEESSCCCSCCHHH----HTTCTTCCEEECCSSCCCEECTTSC----TTCTTCCEEECCSSCCS
T ss_pred --cCcccccCccccEEECcCCcccccCHHH----hcCccccCeeECCCCcCCccChhhc----cccccCCEEECCCCccc
Confidence 2223333468999999999988665443 3556899999999999887655444 34489999999999998
Q ss_pred ccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCc
Q 006842 513 DEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRD 574 (629)
Q Consensus 513 ~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~ 574 (629)
+. .+..|..+++|+.|++++|+++++ +...+...++|++|+|++|.+..
T Consensus 286 ~~----------~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 286 VV----------EPYAFRGLNYLRVLNVSGNQLTTL---EESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EE----------CTTTBTTCTTCCEEECCSSCCSCC---CGGGBSCGGGCCEEECCSSCEEC
T ss_pred eE----------CHHHhcCcccCCEEECCCCcCcee---CHhHcCCCcccCEEEccCCCccC
Confidence 87 566778888999999999988874 22222233789999999998864
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=4.7e-30 Score=286.02 Aligned_cols=149 Identities=14% Similarity=0.137 Sum_probs=108.0
Q ss_pred hhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCH-HHHHHHHHHHhcCCCcCEEEcccCCCCccccc
Q 006842 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA-SGAEFVADMLRYNNTISILDLRANGLRDEVCS 517 (629)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~ 517 (629)
+..+++++.+++++|.+...... .+...+.|+.|+|++|.+.. ..+. .+..+++|++|+|++|+|.+.
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~----~~~~~~~L~~L~Ls~N~~~~~~~~~----~~~~l~~L~~L~Ls~N~L~~l--- 509 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQL--- 509 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEE---
T ss_pred ccccccccccccccccccccccc----ccccchhhhhhhhhhcccccccCch----hhhhccccCEEECCCCccCCc---
Confidence 44567778888888877544322 23445789999999987432 2222 234458999999999999988
Q ss_pred cCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeec
Q 006842 518 GCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNL 597 (629)
Q Consensus 518 ~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L 597 (629)
.+..|.++++|++|+|++|+|+++. +..+.. .++|++|||++|+|++..+..+.... .+|++|+|
T Consensus 510 -------~~~~f~~l~~L~~L~Ls~N~l~~l~--~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~l~-----~~L~~L~L 574 (635)
T 4g8a_A 510 -------SPTAFNSLSSLQVLNMSHNNFFSLD--TFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFP-----SSLAFLNL 574 (635)
T ss_dssp -------CTTTTTTCTTCCEEECTTSCCCBCC--CGGGTT-CTTCCEEECTTSCCCBCCSSCTTCCC-----TTCCEEEC
T ss_pred -------ChHHHcCCCCCCEEECCCCcCCCCC--hhHHhC-CCCCCEEECCCCcCCCCCHHHHHhhh-----CcCCEEEe
Confidence 6778899999999999999999863 233333 38899999999999997777664331 36999999
Q ss_pred cCCccch-hHHHHHHHH
Q 006842 598 ANNFLTK-FGQSALTDA 613 (629)
Q Consensus 598 ~~N~i~~-~~~~~l~~~ 613 (629)
++|+++- -....|...
T Consensus 575 ~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 575 TQNDFACTCEHQSFLQW 591 (635)
T ss_dssp TTCCBCCSGGGHHHHHH
T ss_pred eCCCCcccCCcHHHHHH
Confidence 9999875 333444443
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1e-28 Score=258.11 Aligned_cols=316 Identities=16% Similarity=0.116 Sum_probs=250.4
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHH
Q 006842 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE 296 (629)
Q Consensus 217 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 296 (629)
.++++.|++++|.++.... ..+..+++|++|++++|.+++... ..+..+++|++|+|++|.++... +.
T Consensus 44 l~~l~~l~l~~~~l~~l~~----~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYLP----PH 111 (390)
T ss_dssp GCCCSEEEEESCEESEECT----HHHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred cCCceEEEecCCchhhCCh----hHhcccccCcEEECCCCcccccCh----hhccCCCCcCEEECCCCCCCcCC----HH
Confidence 4779999999999887643 334556999999999999987532 34567799999999999997532 44
Q ss_pred HHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhH
Q 006842 297 ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA 376 (629)
Q Consensus 297 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 376 (629)
.+..+++|++|++++|.++.++. ..+..+++|++|++++|.++......+ ..+++|++|++++|.++..+
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~- 181 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTF-----QATTSLQNLQLSSNRLTHVD- 181 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTTT-----SSCTTCCEEECCSSCCSBCC-
T ss_pred HhcCCCCCCEEECCCCccCcCCH----HHhcCCCCCcEEECCCCccCccChhhc-----cCCCCCCEEECCCCcCCccc-
Confidence 56678999999999999987764 335789999999999999987432222 46678999999999999852
Q ss_pred HHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCC
Q 006842 377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 377 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
+..+++|++|++++|.++.. ...+.|++|++++|.++... . ...++|++|++++|.++
T Consensus 182 ------~~~l~~L~~L~l~~n~l~~~---------~~~~~L~~L~l~~n~l~~~~-----~--~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 182 ------LSLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVVR-----G--PVNVELTILKLQHNNLT 239 (390)
T ss_dssp ------GGGCTTCSEEECCSSCCSEE---------ECCSSCSEEECCSSCCCEEE-----C--CCCSSCCEEECCSSCCC
T ss_pred ------cccccccceeeccccccccc---------CCCCcceEEECCCCeeeecc-----c--cccccccEEECCCCCCc
Confidence 57789999999999998863 34578999999999998742 1 23478999999999998
Q ss_pred hhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhh
Q 006842 457 ADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHML 536 (629)
Q Consensus 457 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~ 536 (629)
+. ..+..+++|++|++++|.++...+..+. .+++|++|+|++|++++. +..+..+++|+
T Consensus 240 ~~------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~-----------~~~~~~l~~L~ 298 (390)
T 3o6n_A 240 DT------AWLLNYPGLVEVDLSYNELEKIMYHPFV----KMQRLERLYISNNRLVAL-----------NLYGQPIPTLK 298 (390)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEESGGGT----TCSSCCEEECCSSCCCEE-----------ECSSSCCTTCC
T ss_pred cc------HHHcCCCCccEEECCCCcCCCcChhHcc----ccccCCEEECCCCcCccc-----------CcccCCCCCCC
Confidence 65 2456789999999999999877555544 449999999999999876 34456789999
Q ss_pred hhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHH
Q 006842 537 FYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 610 (629)
Q Consensus 537 ~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l 610 (629)
.|++++|+++++. ..+... ++|++|+|++|.|++.. +. ...+|++|++++|+++......+
T Consensus 299 ~L~L~~n~l~~~~---~~~~~l-~~L~~L~L~~N~i~~~~---~~------~~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 299 VLDLSHNHLLHVE---RNQPQF-DRLENLYLDHNSIVTLK---LS------THHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp EEECCSSCCCCCG---GGHHHH-TTCSEEECCSSCCCCCC---CC------TTCCCSEEECCSSCEEHHHHHHH
T ss_pred EEECCCCcceecC---cccccc-CcCCEEECCCCccceeC---ch------hhccCCEEEcCCCCccchhHHHH
Confidence 9999999998753 333323 88999999999999853 11 12579999999999998765544
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2e-28 Score=270.08 Aligned_cols=314 Identities=17% Similarity=0.148 Sum_probs=216.5
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHH
Q 006842 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (629)
Q Consensus 189 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 268 (629)
+.+++.|++++|.++......| ..+++|++|+|++|.|+... ...+..+++|++|+|++|.++... +.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~----~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALL----DSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRYLP----PH 117 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHH----HHCCCCSEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred CCCceEEEeeCCCCCCcCHHHH----ccCCCCcEEECCCCCCCCCC----hHHhcCCCCCCEEECCCCcCCCCC----HH
Confidence 4788899999988776544433 45677999999999887653 234556788999999998888752 23
Q ss_pred HHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHH
Q 006842 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (629)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 348 (629)
.+..+++|++|+|++|.|+... +..+..+++|++|++++|.++.... ..+..+++|++|++++|.++...+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~- 188 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDL- 188 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBCCT----TTTTTCTTCCEEECTTSCCSBCCG-
T ss_pred HHcCCCCCCEEEeeCCCCCCCC----HHHhccCCCCCEEEeeCCcCCCCCh----hhhhcCCcCcEEECcCCCCCCcCh-
Confidence 4566788889999888886321 2234567888888888888876654 346678888888888888876421
Q ss_pred HHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCC
Q 006842 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (629)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 428 (629)
..+++|+.|++++|.++.. ...++|++|++++|.++.. +. ...++|+.|++++|.++
T Consensus 189 -------~~l~~L~~L~l~~n~l~~l---------~~~~~L~~L~ls~n~l~~~-----~~--~~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 189 -------SLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNLT 245 (597)
T ss_dssp -------GGCTTCSEEECCSSCCSEE---------ECCTTCSEEECCSSCCCEE-----EC--SCCSCCCEEECCSSCCC
T ss_pred -------hhhhhhhhhhcccCccccc---------cCCchhheeeccCCccccc-----cc--ccCCCCCEEECCCCCCC
Confidence 2345788888888888763 3456788888888887653 11 12357888888888887
Q ss_pred HHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEccc
Q 006842 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508 (629)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 508 (629)
+. ..+..+++|++|+|++|.++...+.. +..+++|+.|+|++|.++.... .+..+++|++|+|++
T Consensus 246 ~~------~~l~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 246 DT------AWLLNYPGLVEVDLSYNELEKIMYHP----FVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSH 310 (597)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEESGG----GTTCSSCCEEECTTSCCCEEEC-----SSSCCTTCCEEECCS
T ss_pred CC------hhhccCCCCCEEECCCCccCCCCHHH----hcCccCCCEEECCCCCCCCCCc-----ccccCCCCcEEECCC
Confidence 63 34666788888888888887654333 3445778888888888765321 123347788888888
Q ss_pred CCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHH
Q 006842 509 NGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 578 (629)
Q Consensus 509 N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~ 578 (629)
|.+... |..+..+++|+.|++++|.+++.. +. ..++|+.|+|++|.+......
T Consensus 311 N~l~~i-----------~~~~~~l~~L~~L~L~~N~l~~~~-----~~-~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 311 NHLLHV-----------ERNQPQFDRLENLYLDHNSIVTLK-----LS-THHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp SCCCCC-----------GGGHHHHTTCSEEECCSSCCCCCC-----CC-TTCCCSEEECCSSCEEHHHHH
T ss_pred CCCCcc-----------CcccccCCCCCEEECCCCCCCCcC-----hh-hcCCCCEEEeeCCCCCChhHH
Confidence 877744 556677777777777777776642 11 126677777777777664433
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=4e-27 Score=250.10 Aligned_cols=308 Identities=19% Similarity=0.163 Sum_probs=236.9
Q ss_pred cCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHH
Q 006842 188 YNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIA 267 (629)
Q Consensus 188 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 267 (629)
.+++|++|++++|.+++.. .+..+++|++|++++|.++... +..+++|++|++++|.++...
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~~~----- 101 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT------GIEKLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTNLD----- 101 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT------TGGGCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSCCC-----
T ss_pred HcCCCCEEEccCCCcccCh------hhcccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCceee-----
Confidence 3489999999999988642 3567888999999999998742 556789999999999998742
Q ss_pred HHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCC-CCChhH
Q 006842 268 ELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN-SIGDEG 346 (629)
Q Consensus 268 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~ 346 (629)
+..+++|++|++++|.++... +..+++|++|++++|.++.++ +..+++|++|++++| .++...
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~~l~-------l~~l~~L~~L~l~~n~~~~~~~ 165 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLTEID-------VSHNTQLTELDCHLNKKITKLD 165 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCSCCC-------CTTCTTCCEEECTTCSCCCCCC
T ss_pred --cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCccceec-------cccCCcCCEEECCCCCcccccc
Confidence 567789999999999987531 567899999999999988753 567889999999999 444421
Q ss_pred HHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCC
Q 006842 347 IRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426 (629)
Q Consensus 347 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 426 (629)
...+++|++|++++|+++.. + +..+++|++|++++|.+++. .+..+++|++|++++|+
T Consensus 166 --------~~~l~~L~~L~ls~n~l~~l-----~--l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 166 --------VTPQTQLTTLDCSFNKITEL-----D--VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp --------CTTCTTCCEEECCSSCCCCC-----C--CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSC
T ss_pred --------cccCCcCCEEECCCCcccee-----c--cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCc
Confidence 13566899999999999884 2 67888999999999988874 36678899999999999
Q ss_pred CCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEc
Q 006842 427 IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506 (629)
Q Consensus 427 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 506 (629)
++.. + +..+++|++|++++|+++... +..+++|+.|++++| +|+.|++
T Consensus 224 l~~i-----p--~~~l~~L~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n------------------~L~~L~l 271 (457)
T 3bz5_A 224 LTEI-----D--VTPLTQLTYFDCSVNPLTELD-------VSTLSKLTTLHCIQT------------------DLLEIDL 271 (457)
T ss_dssp CSCC-----C--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECTTC------------------CCSCCCC
T ss_pred cccc-----C--ccccCCCCEEEeeCCcCCCcC-------HHHCCCCCEEeccCC------------------CCCEEEC
Confidence 8873 2 667789999999999887653 244678888887764 4677889
Q ss_pred ccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHH------HHhhhhcccceeecCCCCCCchhHHHH
Q 006842 507 RANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQ------SFKVVNEALTSIDLAFNEIRDDGAFAI 580 (629)
Q Consensus 507 s~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~------~~~~~~~~L~~LdLs~N~i~~~~~~~l 580 (629)
++|.+.+.+ | +..+++|+.|++++|.+.+..+... .+ ..+++|++|++++|++++. + +
T Consensus 272 ~~n~~~~~~----------~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l-~~~~~L~~L~L~~N~l~~l-~--l 335 (457)
T 3bz5_A 272 THNTQLIYF----------Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDL-SQNPKLVYLYLNNTELTEL-D--V 335 (457)
T ss_dssp TTCTTCCEE----------E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC-TTCTTCCEEECTTCCCSCC-C--C
T ss_pred CCCccCCcc----------c--ccccccCCEEECCCCcccceeccCCCcceEech-hhcccCCEEECCCCccccc-c--c
Confidence 999877663 2 3578999999999997544321100 01 1247899999999999994 1 3
Q ss_pred HHHHhcCCccceeeeeccCCccchh
Q 006842 581 AQALKANEDVAVTSLNLANNFLTKF 605 (629)
Q Consensus 581 ~~~l~~~~~~~L~~L~L~~N~i~~~ 605 (629)
..+ ++|+.|++++|+|+++
T Consensus 336 ~~l------~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 336 SHN------TKLKSLSCVNAHIQDF 354 (457)
T ss_dssp TTC------TTCSEEECCSSCCCBC
T ss_pred ccC------CcCcEEECCCCCCCCc
Confidence 222 4799999999999984
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.4e-28 Score=265.51 Aligned_cols=316 Identities=16% Similarity=0.107 Sum_probs=250.4
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHH
Q 006842 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE 296 (629)
Q Consensus 217 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 296 (629)
+.+++.|++++|.++.... ..+..+++|++|+|++|.+++... ..+..+++|++|+|++|.|+... +.
T Consensus 50 l~~l~~l~l~~~~l~~lp~----~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYLP----PH 117 (597)
T ss_dssp GCCCSEEEESSCEESEECT----HHHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred CCCceEEEeeCCCCCCcCH----HHHccCCCCcEEECCCCCCCCCCh----HHhcCCCCCCEEECCCCcCCCCC----HH
Confidence 4679999999998887643 334556999999999999987532 34567799999999999997532 34
Q ss_pred HHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhH
Q 006842 297 ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA 376 (629)
Q Consensus 297 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 376 (629)
.+..+++|++|++++|.++.++. ..|..+++|++|++++|.++......+ ..+++|++|++++|.++...
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~- 187 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTF-----QATTSLQNLQLSSNRLTHVD- 187 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTTT-----TTCTTCCEEECTTSCCSBCC-
T ss_pred HHcCCCCCCEEEeeCCCCCCCCH----HHhccCCCCCEEEeeCCcCCCCChhhh-----hcCCcCcEEECcCCCCCCcC-
Confidence 55688999999999999987764 346789999999999999987432222 46779999999999999852
Q ss_pred HHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCC
Q 006842 377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 377 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
+..+++|++|++++|.++.. ...+.|++|++++|.++... . ...++|+.|+|++|.++
T Consensus 188 ------~~~l~~L~~L~l~~n~l~~l---------~~~~~L~~L~ls~n~l~~~~-----~--~~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 188 ------LSLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVVR-----G--PVNVELTILKLQHNNLT 245 (597)
T ss_dssp ------GGGCTTCSEEECCSSCCSEE---------ECCTTCSEEECCSSCCCEEE-----C--SCCSCCCEEECCSSCCC
T ss_pred ------hhhhhhhhhhhcccCccccc---------cCCchhheeeccCCcccccc-----c--ccCCCCCEEECCCCCCC
Confidence 56789999999999998862 34578999999999998642 1 12378999999999998
Q ss_pred hhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhh
Q 006842 457 ADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHML 536 (629)
Q Consensus 457 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~ 536 (629)
+. ..+..+++|++|+|++|.++...+..+.. +++|++|+|++|.+++. +..+..+++|+
T Consensus 246 ~~------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----l~~L~~L~Ls~N~l~~l-----------~~~~~~l~~L~ 304 (597)
T 3oja_B 246 DT------AWLLNYPGLVEVDLSYNELEKIMYHPFVK----MQRLERLYISNNRLVAL-----------NLYGQPIPTLK 304 (597)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEESGGGTT----CSSCCEEECTTSCCCEE-----------ECSSSCCTTCC
T ss_pred CC------hhhccCCCCCEEECCCCccCCCCHHHhcC----ccCCCEEECCCCCCCCC-----------CcccccCCCCc
Confidence 64 34567899999999999998876555544 49999999999999876 44456688999
Q ss_pred hhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchhHHHHH
Q 006842 537 FYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 610 (629)
Q Consensus 537 ~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l 610 (629)
.|+|++|.++++ +..+.. +++|++|+|++|.|++..... .++|+.|+|++|+++......+
T Consensus 305 ~L~Ls~N~l~~i---~~~~~~-l~~L~~L~L~~N~l~~~~~~~---------~~~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 305 VLDLSHNHLLHV---ERNQPQ-FDRLENLYLDHNSIVTLKLST---------HHTLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp EEECCSSCCCCC---GGGHHH-HTTCSEEECCSSCCCCCCCCT---------TCCCSEEECCSSCEEHHHHHHH
T ss_pred EEECCCCCCCcc---Cccccc-CCCCCEEECCCCCCCCcChhh---------cCCCCEEEeeCCCCCChhHHHH
Confidence 999999999975 333333 389999999999999854221 2579999999999998755443
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.4e-27 Score=251.68 Aligned_cols=339 Identities=17% Similarity=0.190 Sum_probs=232.2
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHH
Q 006842 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (629)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 241 (629)
.++++|++++|.++.. +. ..++|++|++++|.++... ...++|++|++++|.++... ..
T Consensus 71 ~~l~~L~l~~~~l~~l-----p~---~~~~L~~L~l~~n~l~~lp--------~~~~~L~~L~l~~n~l~~l~-----~~ 129 (454)
T 1jl5_A 71 RQAHELELNNLGLSSL-----PE---LPPHLESLVASCNSLTELP--------ELPQSLKSLLVDNNNLKALS-----DL 129 (454)
T ss_dssp HTCSEEECTTSCCSCC-----CS---CCTTCSEEECCSSCCSSCC--------CCCTTCCEEECCSSCCSCCC-----SC
T ss_pred cCCCEEEecCCccccC-----CC---CcCCCCEEEccCCcCCccc--------cccCCCcEEECCCCccCccc-----CC
Confidence 6789999999998762 21 1378999999999987532 12367999999999987532 11
Q ss_pred HhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHH
Q 006842 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (629)
Q Consensus 242 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (629)
.++|++|++++|.++.. + .+..+++|++|++++|+++.. +. ...+|++|++++|.++..+
T Consensus 130 ---~~~L~~L~L~~n~l~~l-----p-~~~~l~~L~~L~l~~N~l~~l-----p~---~~~~L~~L~L~~n~l~~l~--- 189 (454)
T 1jl5_A 130 ---PPLLEYLGVSNNQLEKL-----P-ELQNSSFLKIIDVDNNSLKKL-----PD---LPPSLEFIAAGNNQLEELP--- 189 (454)
T ss_dssp ---CTTCCEEECCSSCCSSC-----C-CCTTCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSSCC---
T ss_pred ---CCCCCEEECcCCCCCCC-----c-ccCCCCCCCEEECCCCcCccc-----CC---CcccccEEECcCCcCCcCc---
Confidence 26899999999999863 3 367789999999999998642 21 2358999999999988753
Q ss_pred HHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCCh
Q 006842 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (629)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (629)
.+..+++|++|++++|.++. ++ ...++|++|++++|.++. ++ .+..+++|++|++++|.++.
T Consensus 190 ---~~~~l~~L~~L~l~~N~l~~-----l~----~~~~~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 190 ---ELQNLPFLTAIYADNNSLKK-----LP----DLPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp ---CCTTCTTCCEEECCSSCCSS-----CC----CCCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSS
T ss_pred ---cccCCCCCCEEECCCCcCCc-----CC----CCcCcccEEECcCCcCCc-----cc-ccCCCCCCCEEECCCCcCCc
Confidence 36789999999999999875 21 122479999999999986 44 37889999999999999886
Q ss_pred HHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCC
Q 006842 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (629)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (629)
++. ..++|++|++++|+++.. +.. .++|++|++++|.++... ...++|++|++++|
T Consensus 252 -----l~~---~~~~L~~L~l~~N~l~~l-----~~~---~~~L~~L~ls~N~l~~l~--------~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 252 -----LPD---LPPSLEALNVRDNYLTDL-----PEL---PQSLTFLDVSENIFSGLS--------ELPPNLYYLNASSN 307 (454)
T ss_dssp -----CCS---CCTTCCEEECCSSCCSCC-----CCC---CTTCCEEECCSSCCSEES--------CCCTTCCEEECCSS
T ss_pred -----ccc---cccccCEEECCCCccccc-----Ccc---cCcCCEEECcCCccCccc--------CcCCcCCEEECcCC
Confidence 222 247899999999998862 222 378999999999987632 11268999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcc
Q 006842 482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEA 561 (629)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~ 561 (629)
.++... .. .++|++|++++|++.+. |. . +++|+.|++++|+++++.. ..++
T Consensus 308 ~l~~i~-----~~---~~~L~~L~Ls~N~l~~l-p~----------~---~~~L~~L~L~~N~l~~lp~-------~l~~ 358 (454)
T 1jl5_A 308 EIRSLC-----DL---PPSLEELNVSNNKLIEL-PA----------L---PPRLERLIASFNHLAEVPE-------LPQN 358 (454)
T ss_dssp CCSEEC-----CC---CTTCCEEECCSSCCSCC-CC----------C---CTTCCEEECCSSCCSCCCC-------CCTT
T ss_pred cCCccc-----CC---cCcCCEEECCCCccccc-cc----------c---CCcCCEEECCCCccccccc-------hhhh
Confidence 987632 11 15899999999999874 22 1 4789999999999887432 1378
Q ss_pred cceeecCCCCCCc--hhHHHHHHH--------HhcCCccceeeeeccCCccch--hHHHHHHHH
Q 006842 562 LTSIDLAFNEIRD--DGAFAIAQA--------LKANEDVAVTSLNLANNFLTK--FGQSALTDA 613 (629)
Q Consensus 562 L~~LdLs~N~i~~--~~~~~l~~~--------l~~~~~~~L~~L~L~~N~i~~--~~~~~l~~~ 613 (629)
|++|++++|++++ .+|..+..+ +... ..+|++|++++|++++ ..|..+..+
T Consensus 359 L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~-~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL-PQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------
T ss_pred ccEEECCCCCCCcCCCChHHHHhhhhcccccccccc-cCcCCEEECCCCcCCccccchhhHhhe
Confidence 9999999999888 444333211 0000 0369999999999987 445555443
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=2.2e-27 Score=251.86 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=43.8
Q ss_pred hhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccch
Q 006842 533 KHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 604 (629)
Q Consensus 533 ~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 604 (629)
++|+.|++++|+++++. .. .++|++|++++|+++. .|. . ..+|++|++++|++++
T Consensus 317 ~~L~~L~Ls~N~l~~lp---~~----~~~L~~L~L~~N~l~~-lp~-~--------l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 317 PSLEELNVSNNKLIELP---AL----PPRLERLIASFNHLAE-VPE-L--------PQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TTCCEEECCSSCCSCCC---CC----CTTCCEEECCSSCCSC-CCC-C--------CTTCCEEECCSSCCSS
T ss_pred CcCCEEECCCCcccccc---cc----CCcCCEEECCCCcccc-ccc-h--------hhhccEEECCCCCCCc
Confidence 58999999999998742 22 2789999999999997 333 1 1479999999999998
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=7.1e-27 Score=238.35 Aligned_cols=153 Identities=22% Similarity=0.226 Sum_probs=66.9
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHH
Q 006842 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (629)
Q Consensus 219 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 298 (629)
+++.++++++.++... ..+ .+.++.|++++|.+++... ..+..+++|++|+|++|.++... +..+
T Consensus 32 ~l~~l~~~~~~l~~lp-----~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP-----KDL--PPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKIS----PGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCC-----CSC--CTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSSCCCCBC----TTTT
T ss_pred CCeEEEecCCCccccC-----ccC--CCCCeEEECCCCcCCEeCh----hhhccCCCCCEEECCCCcCCeeC----HHHh
Confidence 4666666666554321 100 1455666666665554321 12334455555555555554221 2233
Q ss_pred hhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHH
Q 006842 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (629)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (629)
..+++|++|++++|.++.++.. -.++|++|++++|.++......+ ..+++|++|++++|.++..+.
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~-------~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-- 162 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEK-------MPKTLQELRVHENEITKVRKSVF-----NGLNQMIVVELGTNPLKSSGI-- 162 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSS-------CCTTCCEEECCSSCCCBBCHHHH-----TTCTTCCEEECCSSCCCGGGB--
T ss_pred cCCCCCCEEECCCCcCCccChh-------hcccccEEECCCCcccccCHhHh-----cCCccccEEECCCCcCCccCc--
Confidence 3445555555555554433210 11344555555554444322222 233344444444444433111
Q ss_pred HHHHHHcCCCccEEEccCCCCC
Q 006842 379 VAEYIKNCKSLLWINLYMNDIG 400 (629)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~ 400 (629)
.+..+..+++|++|++++|.++
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC
T ss_pred ChhhccCCCCcCEEECCCCccc
Confidence 1223344444444444444444
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1.4e-26 Score=236.26 Aligned_cols=222 Identities=18% Similarity=0.160 Sum_probs=115.5
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHH
Q 006842 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270 (629)
Q Consensus 191 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 270 (629)
+++.++++++.++... .. -.+++++|+|++|.|+... ...+..+++|++|+|++|.++... +..+
T Consensus 32 ~l~~l~~~~~~l~~lp-----~~--~~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP-----KD--LPPDTALLDLQNNKITEIK----DGDFKNLKNLHTLILINNKISKIS----PGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCC-----CS--CCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCCCBC----TTTT
T ss_pred CCeEEEecCCCccccC-----cc--CCCCCeEEECCCCcCCEeC----hhhhccCCCCCEEECCCCcCCeeC----HHHh
Confidence 5666666666654321 10 1145666666666665542 123344566666666666666531 2334
Q ss_pred hcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHH
Q 006842 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350 (629)
Q Consensus 271 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 350 (629)
..+++|++|++++|.++.. +..+ .++|++|++++|.++.... ..+..+++|++|++++|.++..+..
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l-----~~~~--~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-- 163 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKEL-----PEKM--PKTLQELRVHENEITKVRK----SVFNGLNQMIVVELGTNPLKSSGIE-- 163 (330)
T ss_dssp TTCTTCCEEECCSSCCSBC-----CSSC--CTTCCEEECCSSCCCBBCH----HHHTTCTTCCEEECCSSCCCGGGBC--
T ss_pred cCCCCCCEEECCCCcCCcc-----Chhh--cccccEEECCCCcccccCH----hHhcCCccccEEECCCCcCCccCcC--
Confidence 4556666666666666421 1111 2566666666666665544 3345566666666666666532110
Q ss_pred HHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHH
Q 006842 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430 (629)
Q Consensus 351 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 430 (629)
...+ ..+++|++|++++|.++.. +..+ .++|++|++++|.+++. .+..+..+++|++|++++|.++..
T Consensus 164 ~~~~-~~l~~L~~L~l~~n~l~~l-----~~~~--~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 164 NGAF-QGMKKLSYIRIADTNITTI-----PQGL--PPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp TTGG-GGCTTCCEEECCSSCCCSC-----CSSC--CTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE
T ss_pred hhhc-cCCCCcCEEECCCCccccC-----Cccc--cccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCcee
Confidence 0111 2345666666666666652 2111 24566666666665543 233444555555555555555543
Q ss_pred HHHHHHHHhhcCCcccEEECcCCCCC
Q 006842 431 GASAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 431 ~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
. ...+..+++|++|++++|.++
T Consensus 232 ~----~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 232 D----NGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp C----TTTGGGSTTCCEEECCSSCCS
T ss_pred C----hhhccCCCCCCEEECCCCcCc
Confidence 1 122334455555555555554
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.7e-25 Score=228.86 Aligned_cols=262 Identities=17% Similarity=0.111 Sum_probs=124.1
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHH
Q 006842 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (629)
Q Consensus 189 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 268 (629)
|+.....+++++.++.... . -.++|++|++++|.++... ...+..+++|++|++++|.+++.. +.
T Consensus 30 C~~~~~c~~~~~~l~~iP~-----~--~~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~ 94 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPS-----G--LTEAVKSLDLSNNRITYIS----NSDLQRCVNLQALVLTSNGINTIE----ED 94 (353)
T ss_dssp ECTTSEEECCSTTCSSCCT-----T--CCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSCCCEEC----TT
T ss_pred CCCCeEeeCCCCCcccccc-----c--ccccCcEEECCCCcCcccC----HHHhccCCCCCEEECCCCccCccC----Hh
Confidence 4444555666555543211 0 0134666666666555432 112333455555555555555421 12
Q ss_pred HHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHH
Q 006842 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (629)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 348 (629)
.+..+++|++|++++|.++... ...+..+++|++|++++|.++.++.. ..+..++
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~~l~------------------ 149 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLS----SSWFKPLSSLTFLNLLGNPYKTLGET---SLFSHLT------------------ 149 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCC----HHHHTTCTTCSEEECTTCCCSSSCSS---CSCTTCT------------------
T ss_pred hcCCCCCCCEEECCCCcCCcCC----HhHhCCCccCCEEECCCCCCcccCch---hhhccCC------------------
Confidence 2333445555555555544211 12233444455555555444432210 0233344
Q ss_pred HHHHhhccCCCCceEEEccCC-CCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCC
Q 006842 349 ALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (629)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 427 (629)
+|++|++++| .++.. .+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+
T Consensus 150 -----------~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 150 -----------KLQILRVGNMDTFTKI----QRKDFAGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp -----------TCCEEEEEESSSCCEE----CTTTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCS
T ss_pred -----------CCcEEECCCCcccccc----CHHHccCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCcc
Confidence 4555555544 23332 122334455555555555555443 233444455555555555555
Q ss_pred CHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcc
Q 006842 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (629)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 507 (629)
+...... +..+++|++|++++|.++......+.. ......++.+++.++.+++.....+...+..+++|++|+++
T Consensus 211 ~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 211 ILLLEIF----VDVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp TTHHHHH----HHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred ccchhhh----hhhcccccEEECCCCcccccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence 4432111 122355555555555554433222221 13345666777777777766666666666667777777777
Q ss_pred cCCCCcc
Q 006842 508 ANGLRDE 514 (629)
Q Consensus 508 ~N~l~~~ 514 (629)
+|+++..
T Consensus 286 ~N~l~~i 292 (353)
T 2z80_A 286 RNQLKSV 292 (353)
T ss_dssp SSCCCCC
T ss_pred CCCCCcc
Confidence 7777644
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=1.6e-26 Score=257.47 Aligned_cols=204 Identities=17% Similarity=0.203 Sum_probs=140.3
Q ss_pred CCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHH--------------------HHHHHHHhcCCCc
Q 006842 358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA--------------------EKIADALKQNRTI 417 (629)
Q Consensus 358 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~--------------------~~l~~~l~~~~~L 417 (629)
+++|+.|++++|.+...+. .+..+..+.+|++|++..+.+..... ..-...+..++++
T Consensus 370 l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGC--CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CTTCCEEECCSSCCBEEEE--CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccchhhccccccccc--cccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 4578889999888765322 22333445555555555443211000 0001234556788
Q ss_pred cEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhc
Q 006842 418 TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRY 497 (629)
Q Consensus 418 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 497 (629)
+.++++.|.+... ....+..++.|++|++++|.+.... ....+..+++|++|+|++|+|+...+..|..
T Consensus 448 ~~l~ls~n~l~~~----~~~~~~~~~~L~~L~Ls~N~~~~~~---~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~---- 516 (635)
T 4g8a_A 448 IYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTAFNS---- 516 (635)
T ss_dssp CEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTTTTT----
T ss_pred ccccccccccccc----cccccccchhhhhhhhhhccccccc---CchhhhhccccCEEECCCCccCCcChHHHcC----
Confidence 8888888887654 3345566799999999999754321 1123456689999999999998876655544
Q ss_pred CCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCc-hh
Q 006842 498 NNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRD-DG 576 (629)
Q Consensus 498 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~-~~ 576 (629)
+++|++|+|++|+|++. .+..|.++++|++|+|++|+|++.. +..+....++|++|+|++|.+.- -.
T Consensus 517 l~~L~~L~Ls~N~l~~l----------~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSL----------DTFPYKCLNSLQVLDYSLNHIMTSK--KQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CTTCCEEECTTSCCCBC----------CCGGGTTCTTCCEEECTTSCCCBCC--SSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCEEECCCCcCCCC----------ChhHHhCCCCCCEEECCCCcCCCCC--HHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 49999999999999988 6678899999999999999999863 44444444689999999998863 34
Q ss_pred HHHHHHHHhc
Q 006842 577 AFAIAQALKA 586 (629)
Q Consensus 577 ~~~l~~~l~~ 586 (629)
...+.++++.
T Consensus 585 ~~~~~~wl~~ 594 (635)
T 4g8a_A 585 HQSFLQWIKD 594 (635)
T ss_dssp GHHHHHHHHH
T ss_pred cHHHHHHHHh
Confidence 4566666653
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=4.9e-27 Score=239.70 Aligned_cols=249 Identities=17% Similarity=0.161 Sum_probs=111.7
Q ss_pred hcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHH
Q 006842 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (629)
Q Consensus 300 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (629)
.+++|++|++++|.++.... ..+..+++|++|++++|.++. ++..+. ++|++|++++|.++.. .
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~-----l~~~~~---~~L~~L~l~~n~i~~~----~ 139 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHE----KAFSPLRKLQKLYISKNHLVE-----IPPNLP---SSLVELRIHDNRIRKV----P 139 (332)
T ss_dssp TCTTCCEEECCSSCCCEECG----GGSTTCTTCCEEECCSSCCCS-----CCSSCC---TTCCEEECCSSCCCCC----C
T ss_pred CCCCCcEEECCCCccCccCH----hHhhCcCCCCEEECCCCcCCc-----cCcccc---ccCCEEECCCCccCcc----C
Confidence 34444444444444443322 233444555555555554442 111111 2455555555555442 1
Q ss_pred HHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhH
Q 006842 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (629)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (629)
+..+..+++|++|++++|.+++.+. .+..+..+ +|++|++++|.++.. +..+ .++|++|++++|.++...
T Consensus 140 ~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l-~L~~L~l~~n~l~~l-----~~~~--~~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 140 KGVFSGLRNMNCIEMGGNPLENSGF--EPGAFDGL-KLNYLRISEAKLTGI-----PKDL--PETLNELHLDHNKIQAIE 209 (332)
T ss_dssp SGGGSSCSSCCEEECCSCCCBGGGS--CTTSSCSC-CCSCCBCCSSBCSSC-----CSSS--CSSCSCCBCCSSCCCCCC
T ss_pred HhHhCCCccCCEEECCCCccccCCC--CcccccCC-ccCEEECcCCCCCcc-----Cccc--cCCCCEEECCCCcCCccC
Confidence 2234445555555555555532110 11222222 555555555555441 1111 145555555555554432
Q ss_pred HHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhh
Q 006842 460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYS 539 (629)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 539 (629)
... +..+++|++|++++|.++...+..+ ..+++|++|++++|+++.. |..+..+++|+.|+
T Consensus 210 ~~~----l~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~~l-----------p~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 210 LED----LLRYSKLYRLGLGHNQIRMIENGSL----SFLPTLRELHLDNNKLSRV-----------PAGLPDLKLLQVVY 270 (332)
T ss_dssp TTS----STTCTTCSCCBCCSSCCCCCCTTGG----GGCTTCCEEECCSSCCCBC-----------CTTGGGCTTCCEEE
T ss_pred HHH----hcCCCCCCEEECCCCcCCcCChhHh----hCCCCCCEEECCCCcCeec-----------ChhhhcCccCCEEE
Confidence 221 2233555555555555544333222 2235566666666655532 33455555555555
Q ss_pred hhhhcchhhHHHHHHHhh-----hhcccceeecCCCCCC--chhHHHHHHHHhcCCccceeeeeccCCc
Q 006842 540 LCINYLQGAKCLAQSFKV-----VNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNF 601 (629)
Q Consensus 540 Ls~N~l~~~~~l~~~~~~-----~~~~L~~LdLs~N~i~--~~~~~~l~~~l~~~~~~~L~~L~L~~N~ 601 (629)
+++|++++... ..+.. ....|+.|++++|.+. +..+..+... .+|+.|++++|+
T Consensus 271 l~~N~l~~~~~--~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l------~~L~~l~l~~n~ 331 (332)
T 2ft3_A 271 LHTNNITKVGV--NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV------TDRLAIQFGNYK 331 (332)
T ss_dssp CCSSCCCBCCT--TSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB------CCSTTEEC----
T ss_pred CCCCCCCccCh--hHccccccccccccccceEeecCcccccccCccccccc------chhhhhhccccc
Confidence 55555554311 11110 0255777777777776 3333333222 357777777764
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.1e-24 Score=224.23 Aligned_cols=261 Identities=16% Similarity=0.155 Sum_probs=180.1
Q ss_pred hcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHH
Q 006842 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (629)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (629)
.|+.....+.+++.++.. +..+ .++|++|++++|.|+..... .+..+++|++|++++|.++... .
T Consensus 29 ~C~~~~~c~~~~~~l~~i-----P~~~--~~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~----~ 93 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSI-----PSGL--TEAVKSLDLSNNRITYISNS----DLQRCVNLQALVLTSNGINTIE----E 93 (353)
T ss_dssp EECTTSEEECCSTTCSSC-----CTTC--CTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCEEC----T
T ss_pred CCCCCeEeeCCCCCcccc-----cccc--cccCcEEECCCCcCcccCHH----HhccCCCCCEEECCCCccCccC----H
Confidence 578888899999998763 3332 36899999999999865433 3457889999999999998753 3
Q ss_pred HHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCC-CCChhh
Q 006842 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN-YGGALG 318 (629)
Q Consensus 240 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~ 318 (629)
..+..+++|++|++++|.++.... ..+..+++|++|++++|.++.... ...+..+++|++|++++| .++...
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSS----SWFKPLSSLTFLNLLGNPYKTLGE---TSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCH----HHHTTCTTCSEEECTTCCCSSSCS---SCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred hhcCCCCCCCEEECCCCcCCcCCH----hHhCCCccCCEEECCCCCCcccCc---hhhhccCCCCcEEECCCCccccccC
Confidence 345667999999999999987532 346678999999999999864211 024567899999999999 476654
Q ss_pred HHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCC
Q 006842 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398 (629)
Q Consensus 319 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 398 (629)
. ..+..+++|++|++++|.++......+ ..+++|++|++++|.++.. ....+..+++|++|++++|.
T Consensus 167 ~----~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 167 R----KDFAGLTFLEELEIDASDLQSYEPKSL-----KSIQNVSHLILHMKQHILL----LEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp T----TTTTTCCEEEEEEEEETTCCEECTTTT-----TTCSEEEEEEEECSCSTTH----HHHHHHHTTTEEEEEEESCB
T ss_pred H----HHccCCCCCCEEECCCCCcCccCHHHH-----hccccCCeecCCCCccccc----hhhhhhhcccccEEECCCCc
Confidence 3 346678888899998888876422222 3556788888888887663 22334557778888888887
Q ss_pred CChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCC
Q 006842 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 399 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
+++.....+.. ......++.++++++.+++.....++..+..+++|++|++++|+++
T Consensus 234 l~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 234 LDTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp CTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 76542222211 2234556666666666666655556655666666666666666555
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=2.7e-26 Score=234.18 Aligned_cols=296 Identities=16% Similarity=0.122 Sum_probs=147.2
Q ss_pred CccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHH
Q 006842 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (629)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 242 (629)
+++.++++++.++.. +..+ .++|++|++++|.|+..... .+..+++|++|+|++|.++... ...+
T Consensus 34 ~l~~l~~~~~~l~~i-----p~~~--~~~l~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~----~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-----PKEI--SPDTTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKISKIH----EKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSC-----CSCC--CTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEEC----GGGS
T ss_pred cCCEEECCCCCcccc-----CCCC--CCCCeEEECCCCcCCccCHh----HhhCCCCCcEEECCCCccCccC----HhHh
Confidence 466677777666542 2211 25667777777766543222 2345566667777666665432 2334
Q ss_pred hhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHH
Q 006842 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (629)
Q Consensus 243 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 322 (629)
..+++|++|++++|.++.. +..+. ++|++|++++|.++... ...+..+++|++|++++|.++..+..
T Consensus 99 ~~l~~L~~L~L~~n~l~~l-----~~~~~--~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~-- 165 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEI-----PPNLP--SSLVELRIHDNRIRKVP----KGVFSGLRNMNCIEMGGNPLENSGFE-- 165 (332)
T ss_dssp TTCTTCCEEECCSSCCCSC-----CSSCC--TTCCEEECCSSCCCCCC----SGGGSSCSSCCEEECCSCCCBGGGSC--
T ss_pred hCcCCCCEEECCCCcCCcc-----Ccccc--ccCCEEECCCCccCccC----HhHhCCCccCCEEECCCCccccCCCC--
Confidence 4456666666666666542 11111 45666666666664221 12234456666666666655432110
Q ss_pred HHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChH
Q 006842 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (629)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 402 (629)
+..+..+ +|++|++++|.++. ++..+. ++|++|++++|.++.. .+..+..+++|++|++++|.+++.
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~-----l~~~~~---~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTG-----IPKDLP---ETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSS-----CCSSSC---SSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred cccccCC-ccCEEECcCCCCCc-----cCcccc---CCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCcC
Confidence 1223333 56666666665554 111111 3455556665555553 223344555555555555555543
Q ss_pred HHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCC
Q 006842 403 GAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (629)
Q Consensus 403 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (629)
.+..+..+++|++|++++|+++. ++..+..+++|++|++++|+|+.
T Consensus 233 ----~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~------------------------- 278 (332)
T 2ft3_A 233 ----ENGSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITK------------------------- 278 (332)
T ss_dssp ----CTTGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCB-------------------------
T ss_pred ----ChhHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCc-------------------------
Confidence 22234445555555555555543 33334444555555555555543
Q ss_pred CCHHHHHHHHHHH--hcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhc
Q 006842 483 IGASGAEFVADML--RYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINY 544 (629)
Q Consensus 483 i~~~~~~~l~~~l--~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~ 544 (629)
.+...+.... ...+.|+.|++++|.+... ...+..|..+++|+.+++++|+
T Consensus 279 ---~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~--------~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 279 ---VGVNDFCPVGFGVKRAYYNGISLFNNPVPYW--------EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ---CCTTSSSCSSCCSSSCCBSEEECCSSSSCGG--------GSCGGGGTTBCCSTTEEC----
T ss_pred ---cChhHccccccccccccccceEeecCccccc--------ccCcccccccchhhhhhccccc
Confidence 3322222110 0125577777777776521 1145667777777777777764
No 57
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.88 E-value=4.2e-21 Score=197.54 Aligned_cols=209 Identities=22% Similarity=0.300 Sum_probs=133.5
Q ss_pred CccEEEeccCCCChhhHHHHHHHHhhc-CCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHh
Q 006842 275 ILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (629)
Q Consensus 275 ~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (629)
.|++|+|++|.|++.+...+...+... ++|++|+|++|.+++.+...+...+ ++|++|+|++|.+++.+...+...
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L---~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF---LRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH---HTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH---HhccHhhcCCCCCCHHHHHHHHHH
Confidence 345555555555544444444444332 3555555555555544444443333 246667777777777666666666
Q ss_pred hccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHH
Q 006842 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (629)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 433 (629)
+....++|++|+|++|.|++.++..++..+..+++|++|+|++|.|++.++..++..+..+++|++|+|++|.|++.++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 65455567777777777777777777777777777888888888887777777777777777788888888888877777
Q ss_pred HHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcC-CCccEEe--ccCCCCCHH
Q 006842 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLK--LGWCQIGAS 486 (629)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~--L~~n~i~~~ 486 (629)
.++..+..+++|++|+|++|.|++.+...+....... ..|+.+. +..+.++..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 7777777777788888888888877777776643322 1266666 666666544
No 58
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.88 E-value=4.2e-21 Score=197.57 Aligned_cols=211 Identities=26% Similarity=0.329 Sum_probs=177.3
Q ss_pred cCCccEEEccCCCCCHHHHHHHHHHhccC-CCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHH
Q 006842 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (629)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 239 (629)
.+.|++|+|++|.+++.+...++..+... ++|++|+|++|.|++.++..+...+. +|++|+|++|.|++.+...++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHH
Confidence 57899999999999999999999888865 69999999999999998888877665 499999999999999999998
Q ss_pred HHHh-hCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhh
Q 006842 240 DILV-DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG 318 (629)
Q Consensus 240 ~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 318 (629)
..+. .+++|++|+|++|.|++.+...++..+..+++|++|+|++|.|++.+...++..+..+++|++|+|++|.|++.+
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 8885 478899999999999999999999999989999999999999999998899999888899999999999999999
Q ss_pred HHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEE--ccCCCCCch
Q 006842 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD--IGNNSISAK 374 (629)
Q Consensus 319 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~--Ls~n~l~~~ 374 (629)
...++.++..+++|++|+|++|.|++.+...+........+.|+.+. +..+.+++.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 88888888888999999999999999888888764433212377777 666666654
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=2e-25 Score=225.50 Aligned_cols=134 Identities=17% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCceEEEccCCCCCchhHHHHHHHHHcCC-CccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHH
Q 006842 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437 (629)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 437 (629)
++|++|++++|.++.. ++..+..++ +|++|++++|.++.. ++..+..++ |++|++++|.++.. .+.
T Consensus 149 ~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~----~~~~~~~l~-L~~L~Ls~N~l~~~----~~~ 215 (313)
T 1ogq_A 149 PNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGK----IPPTFANLN-LAFVDLSRNMLEGD----ASV 215 (313)
T ss_dssp TTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEE----CCGGGGGCC-CSEEECCSSEEEEC----CGG
T ss_pred CCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeecc----CChHHhCCc-ccEEECcCCcccCc----CCH
Confidence 3445555555544432 333444444 555555555555432 333344443 56666666655443 233
Q ss_pred HhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 438 VLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 438 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
.+..+++|++|++++|.++..... +..+++|++|+|++|.++...+..+ ..+++|++|+|++|++++.
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIYGTLPQGL----TQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCEECCCGGG----GGCTTCCEEECCSSEEEEE
T ss_pred HHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCcccCcCChHH----hcCcCCCEEECcCCccccc
Confidence 444556666666666655422111 1233445555555555443322222 2235555566665555554
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.4e-25 Score=226.68 Aligned_cols=250 Identities=18% Similarity=0.189 Sum_probs=143.0
Q ss_pred CccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccC-CCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHh
Q 006842 275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG-NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (629)
Q Consensus 275 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (629)
++++|+|++|.+++. ..++..+.++++|++|++++ |.+.... +..+..+++|++|++++|.++... +..
T Consensus 51 ~l~~L~L~~~~l~~~--~~~~~~l~~l~~L~~L~L~~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~----p~~ 120 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGPI----PPAIAKLTQLHYLYITHTNVSGAI----PDF 120 (313)
T ss_dssp CEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESCC----CGGGGGCTTCSEEEEEEECCEEEC----CGG
T ss_pred eEEEEECCCCCccCC--cccChhHhCCCCCCeeeCCCCCcccccC----ChhHhcCCCCCEEECcCCeeCCcC----CHH
Confidence 355555555555420 01233444555555555553 4443211 133556666777777666665321 111
Q ss_pred hccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCC-CccEEEeeCCCCCHHHH
Q 006842 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNR-TITTIDLGGNNIHSKGA 432 (629)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~ 432 (629)
+ ..+++|++|++++|.++.. ++..+..+++|++|++++|.+++. ++..+..++ .|++|++++|.++..
T Consensus 121 ~-~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~-- 189 (313)
T 1ogq_A 121 L-SQIKTLVTLDFSYNALSGT----LPPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGK-- 189 (313)
T ss_dssp G-GGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEE--
T ss_pred H-hCCCCCCEEeCCCCccCCc----CChHHhcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeecc--
Confidence 1 2445677777777776643 455667788888888888877744 555666666 788888888877643
Q ss_pred HHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCC
Q 006842 433 SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (629)
Q Consensus 433 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 512 (629)
++..+..++ |++|++++|.++..... .+..+++|++|+|++|.++...+. +..+++|++|+|++|+++
T Consensus 190 --~~~~~~~l~-L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 190 --IPPTFANLN-LAFVDLSRNMLEGDASV----LFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp --CCGGGGGCC-CSEEECCSSEEEECCGG----GCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCE
T ss_pred --CChHHhCCc-ccEEECcCCcccCcCCH----HHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCccc
Confidence 334444445 78888888777643222 234456777777777776543222 233467777777777776
Q ss_pred ccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCC
Q 006842 513 DEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNE 571 (629)
Q Consensus 513 ~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~ 571 (629)
+. .|..+..+++|+.|++++|+++|..+ .. . ..++|+.|++++|.
T Consensus 258 ~~----------~p~~l~~l~~L~~L~Ls~N~l~~~ip--~~-~-~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 258 GT----------LPQGLTQLKFLHSLNVSFNNLCGEIP--QG-G-NLQRFDVSAYANNK 302 (313)
T ss_dssp EC----------CCGGGGGCTTCCEEECCSSEEEEECC--CS-T-TGGGSCGGGTCSSS
T ss_pred Cc----------CChHHhcCcCCCEEECcCCcccccCC--CC-c-cccccChHHhcCCC
Confidence 65 45555666666666666666654321 11 1 12555555555554
No 61
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.2e-21 Score=196.08 Aligned_cols=161 Identities=15% Similarity=0.160 Sum_probs=69.2
Q ss_pred CCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCC-CCChHHHHH
Q 006842 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEK 406 (629)
Q Consensus 328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~ 406 (629)
.+++|++|++++|.+++.++..+. ..+++|++|++++|.+++. .+..+..+++|++|++++| .+++.+
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~----~~~~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~~~~l~~~~--- 159 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGIL----SQCSKLQNLSLEGLRLSDP----IVNTLAKNSNLVRLNLSGCSGFSEFA--- 159 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHH----TTBCCCSEEECTTCBCCHH----HHHHHTTCTTCSEEECTTCBSCCHHH---
T ss_pred cCCCCCEEEccCCCcCHHHHHHHH----hhCCCCCEEeCcCcccCHH----HHHHHhcCCCCCEEECCCCCCCCHHH---
Confidence 344455555555544443222222 2233455555555544443 3334444555555555555 444432
Q ss_pred HHHHHhcCCCccEEEeeCC-CCCHHHHHHHHHHhhcCC-cccEEECcCC--CCChhHHHHHHHHHhcCCCccEEeccCCC
Q 006842 407 IADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNS-VITSLDLAYN--PIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (629)
Q Consensus 407 l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (629)
++..+..+++|++|++++| .+++.+ +...+..++ +|++|++++| .+++.... ..+..+++|++|++++|.
T Consensus 160 l~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 160 LQTLLSSCSRLDELNLSWCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp HHHHHHHCTTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCSEEECTTCT
T ss_pred HHHHHhcCCCCCEEcCCCCCCcChHH---HHHHHHhcccCCCEEEeCCCcccCCHHHHH---HHHhhCCCCCEEeCCCCC
Confidence 2222333445555555555 554432 122223344 5555555555 33332221 122334455555555554
Q ss_pred -CCHHHHHHHHHHHhcCCCcCEEEcccC
Q 006842 483 -IGASGAEFVADMLRYNNTISILDLRAN 509 (629)
Q Consensus 483 -i~~~~~~~l~~~l~~~~~L~~L~Ls~N 509 (629)
+++..+..+. .+++|++|++++|
T Consensus 234 ~l~~~~~~~l~----~l~~L~~L~l~~~ 257 (336)
T 2ast_B 234 MLKNDCFQEFF----QLNYLQHLSLSRC 257 (336)
T ss_dssp TCCGGGGGGGG----GCTTCCEEECTTC
T ss_pred cCCHHHHHHHh----CCCCCCEeeCCCC
Confidence 4433333222 2255555555555
No 62
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1e-20 Score=193.12 Aligned_cols=235 Identities=15% Similarity=0.185 Sum_probs=145.3
Q ss_pred CCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHH
Q 006842 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (629)
Q Consensus 246 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (629)
++++.|++++|.+++.... +..+++|++|++++|.+++. .++..+..+++|++|++++|.+++... ..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~----~~ 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIV----NT 137 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHH----HH
T ss_pred ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCEEeCcCcccCHHHH----HH
Confidence 4555555555555432111 22446667777776666532 234455566677777777776654433 34
Q ss_pred hcCCCCccEEEccCC-CCChhHHHHHHHhhccCCCCceEEEccCC-CCCchhHHHHHHHHHcCC-CccEEEccCC--CCC
Q 006842 326 LEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCK-SLLWINLYMN--DIG 400 (629)
Q Consensus 326 l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n--~l~ 400 (629)
+..+++|++|++++| .+++.++..+.. .+++|++|++++| .+++.+ ++..+..++ +|++|++++| .++
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~----~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFALQTLLS----SCSRLDELNLSWCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHHHHHHHH----HCTTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHh----cCCCCCEEcCCCCCCcChHH---HHHHHHhcccCCCEEEeCCCcccCC
Confidence 556777777777777 666655544432 3346777777777 777643 344566777 7888888887 566
Q ss_pred hHHHHHHHHHHhcCCCccEEEeeCCC-CCHHHHHHHHHHhhcCCcccEEECcCC-CCChhHHHHHHHHHhcCCCccEEec
Q 006842 401 DEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKL 478 (629)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L 478 (629)
+.+ ++..+..+++|++|++++|. +++... ..+..+++|++|++++| .+.+.+... +..+++|++|++
T Consensus 211 ~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l 279 (336)
T 2ast_B 211 KSD---LSTLVRRCPNLVHLDLSDSVMLKNDCF----QEFFQLNYLQHLSLSRCYDIIPETLLE----LGEIPTLKTLQV 279 (336)
T ss_dssp HHH---HHHHHHHCTTCSEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTCTTCCGGGGGG----GGGCTTCCEEEC
T ss_pred HHH---HHHHHhhCCCCCEEeCCCCCcCCHHHH----HHHhCCCCCCEeeCCCCCCCCHHHHHH----HhcCCCCCEEec
Confidence 543 34455567788888888887 665532 34556688888888888 455554422 345678888888
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccc
Q 006842 479 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCS 517 (629)
Q Consensus 479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~ 517 (629)
++| +++.+...+.. .+..|++++|++++..|.
T Consensus 280 ~~~-i~~~~~~~l~~------~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 280 FGI-VPDGTLQLLKE------ALPHLQINCSHFTTIARP 311 (336)
T ss_dssp TTS-SCTTCHHHHHH------HSTTSEESCCCSCCTTCS
T ss_pred cCc-cCHHHHHHHHh------hCcceEEecccCccccCC
Confidence 888 76665555542 255556788888877544
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=5.2e-24 Score=215.64 Aligned_cols=219 Identities=21% Similarity=0.142 Sum_probs=102.0
Q ss_pred cCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHH
Q 006842 272 NNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM 351 (629)
Q Consensus 272 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 351 (629)
.+++|++|+|++|.++.. .+..+..+++|++|++++|.++.... +..+++|++|++++|.++..
T Consensus 32 ~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~l------ 95 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQEL------ 95 (317)
T ss_dssp TGGGCSEEECTTSCCCCC----CHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEEE------
T ss_pred cCCCCCEEECcCCccCcC----CHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCccccc------
Confidence 344566666666655432 13344455556666665555543321 44555555555555555431
Q ss_pred HhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHH
Q 006842 352 SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKG 431 (629)
Q Consensus 352 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 431 (629)
...++|++|++++|.++... ...+++|++|++++|.++.. .+..+..+++|++|++++|.++.
T Consensus 96 ----~~~~~L~~L~l~~n~l~~~~-------~~~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~-- 158 (317)
T 3o53_A 96 ----LVGPSIETLHAANNNISRVS-------CSRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDT-- 158 (317)
T ss_dssp ----EECTTCCEEECCSSCCSEEE-------ECCCSSCEEEECCSSCCCSG----GGBCTGGGSSEEEEECTTSCCCE--
T ss_pred ----cCCCCcCEEECCCCccCCcC-------ccccCCCCEEECCCCCCCCc----cchhhhccCCCCEEECCCCCCCc--
Confidence 11234555555555555431 12234455555555555442 12223334445555555554444
Q ss_pred HHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCC
Q 006842 432 ASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (629)
Q Consensus 432 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l 511 (629)
.....+. ..+++|++|+|++|.++..... ..+++|++|+|++|++
T Consensus 159 --------------------------~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~------~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 159 --------------------------VNFAELA---ASSDTLEHLNLQYNFIYDVKGQ------VVFAKLKTLDLSSNKL 203 (317)
T ss_dssp --------------------------EEGGGGG---GGTTTCCEEECTTSCCCEEECC------CCCTTCCEEECCSSCC
T ss_pred --------------------------ccHHHHh---hccCcCCEEECCCCcCcccccc------cccccCCEEECCCCcC
Confidence 3222111 1224444444444444332110 0125555555555555
Q ss_pred CccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCC
Q 006842 512 RDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIR 573 (629)
Q Consensus 512 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~ 573 (629)
++. +..+..+++|+.|++++|+++++ +..+.. .++|++|++++|.+.
T Consensus 204 ~~l-----------~~~~~~l~~L~~L~L~~N~l~~l---~~~~~~-l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 204 AFM-----------GPEFQSAAGVTWISLRNNKLVLI---EKALRF-SQNLEHFDLRGNGFH 250 (317)
T ss_dssp CEE-----------CGGGGGGTTCSEEECTTSCCCEE---CTTCCC-CTTCCEEECTTCCCB
T ss_pred Ccc-----------hhhhcccCcccEEECcCCcccch---hhHhhc-CCCCCEEEccCCCcc
Confidence 544 22355555555555555555542 222222 255666666666666
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=3.9e-23 Score=225.94 Aligned_cols=286 Identities=16% Similarity=0.119 Sum_probs=193.9
Q ss_pred CCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHH
Q 006842 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (629)
Q Consensus 218 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 297 (629)
.+++.|++++|.++.. +..+ .++|++|+|++|.|+.. +. .+++|++|+|++|.|+.. +.
T Consensus 40 ~~l~~L~ls~n~L~~l-----p~~l--~~~L~~L~L~~N~l~~l-----p~---~l~~L~~L~Ls~N~l~~l-----p~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-----PDCL--PAHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGNQLTSL-----PV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCC-----CSCC--CTTCSEEEECSCCCSCC-----CC---CCTTCCEEEECSCCCSCC-----CC-
T ss_pred CCCcEEEecCCCcCcc-----Chhh--CCCCcEEEecCCCCCCC-----CC---cCCCCCEEEcCCCcCCcC-----CC-
Confidence 3589999999988743 2211 26899999999988853 22 457899999999988632 22
Q ss_pred HhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHH
Q 006842 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377 (629)
Q Consensus 298 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 377 (629)
.+++|++|++++|.++.++. .+++|++|++++|.++. ++ ...++|++|++++|.++..
T Consensus 99 --~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~-----lp----~~l~~L~~L~Ls~N~l~~l--- 156 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTS-----LP----VLPPGLQELSVSDNQLASL--- 156 (622)
T ss_dssp --CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSC-----CC----CCCTTCCEEECCSSCCSCC---
T ss_pred --CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCc-----CC----CCCCCCCEEECcCCcCCCc---
Confidence 56888899999888877543 46788888888888876 22 2235788888888888763
Q ss_pred HHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCCh
Q 006842 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (629)
Q Consensus 378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (629)
+ ...++|+.|++++|.++. ++ ..+++|+.|++++|.|+.. +. ..++|+.|++++|.++.
T Consensus 157 --~---~~~~~L~~L~L~~N~l~~-----l~---~~~~~L~~L~Ls~N~l~~l-----~~---~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 157 --P---ALPSELCKLWAYNNQLTS-----LP---MLPSGLQELSVSDNQLASL-----PT---LPSELYKLWAYNNRLTS 215 (622)
T ss_dssp --C---CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSS
T ss_pred --C---CccCCCCEEECCCCCCCC-----Cc---ccCCCCcEEECCCCCCCCC-----CC---ccchhhEEECcCCcccc
Confidence 2 235678888888888876 33 3467888888888888752 22 23678888888888774
Q ss_pred hHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhh
Q 006842 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLF 537 (629)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~ 537 (629)
.. ...++|++|+|++|.|+... ..+++|++|+|++|+|+.. |. .+++|+.
T Consensus 216 l~--------~~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~l-----------p~---~~~~L~~ 265 (622)
T 3g06_A 216 LP--------ALPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSL-----------PM---LPSGLLS 265 (622)
T ss_dssp CC--------CCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC-----------CC---CCTTCCE
T ss_pred cC--------CCCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcC-----------Cc---ccccCcE
Confidence 32 12367888888888877643 2347788888888887754 22 4567777
Q ss_pred hhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCc-cceeeeeccCCc
Q 006842 538 YSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED-VAVTSLNLANNF 601 (629)
Q Consensus 538 L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~-~~L~~L~L~~N~ 601 (629)
|+|++|+|+.+ +..+... ++|+.|+|++|.+++..+..+..+...... ..+..++++++.
T Consensus 266 L~Ls~N~L~~l---p~~l~~l-~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~~~~~~ 326 (622)
T 3g06_A 266 LSVYRNQLTRL---PESLIHL-SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326 (622)
T ss_dssp EECCSSCCCSC---CGGGGGS-CTTCEEECCSCCCCHHHHHHHHHHHHSTTCCSCEEECCSCCC-
T ss_pred EeCCCCCCCcC---CHHHhhc-cccCEEEecCCCCCCcCHHHHHhcccccccCCCceeeecCCCc
Confidence 77777777743 3444433 677777777777777777766655432111 234455555543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=5.9e-23 Score=207.88 Aligned_cols=238 Identities=22% Similarity=0.214 Sum_probs=150.3
Q ss_pred CCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHH
Q 006842 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (629)
Q Consensus 245 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 324 (629)
+++|++|+|++|.+++.. +..+..+++|++|+|++|.+++.. .+..+++|++|++++|.++..+
T Consensus 33 ~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~l~~L~~L~Ls~n~l~~l~------ 96 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQIS----AADLAPFTKLELLNLSSNVLYETL------DLESLSTLRTLDLNNNYVQELL------ 96 (317)
T ss_dssp GGGCSEEECTTSCCCCCC----HHHHTTCTTCCEEECTTSCCEEEE------EETTCTTCCEEECCSSEEEEEE------
T ss_pred CCCCCEEECcCCccCcCC----HHHhhCCCcCCEEECCCCcCCcch------hhhhcCCCCEEECcCCcccccc------
Confidence 445555666555555432 233344556666666666554321 0345566666666666655432
Q ss_pred HhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHH
Q 006842 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (629)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (629)
..++|++|++++|.++.... ...++|++|++++|.++.. .+..+..+++|++|++++|.+++.
T Consensus 97 ---~~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~-- 159 (317)
T 3o53_A 97 ---VGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDTV-- 159 (317)
T ss_dssp ---ECTTCCEEECCSSCCSEEEE--------CCCSSCEEEECCSSCCCSG----GGBCTGGGSSEEEEECTTSCCCEE--
T ss_pred ---CCCCcCEEECCCCccCCcCc--------cccCCCCEEECCCCCCCCc----cchhhhccCCCCEEECCCCCCCcc--
Confidence 23667777777776665321 2334677777777777764 233456667777777777777764
Q ss_pred HHHHHHH-hcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCC
Q 006842 405 EKIADAL-KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 483 (629)
Q Consensus 405 ~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 483 (629)
.+..+ ..+++|++|++++|.|+.. .....+++|++|++++|.++..... +..+++|++|+|++|.+
T Consensus 160 --~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~l~~~-----~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 160 --NFAELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKL 226 (317)
T ss_dssp --EGGGGGGGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEECGG-----GGGGTTCSEEECTTSCC
T ss_pred --cHHHHhhccCcCCEEECCCCcCccc------ccccccccCCEEECCCCcCCcchhh-----hcccCcccEEECcCCcc
Confidence 22222 3467778888888877763 1122357888888888888754322 34457888888888888
Q ss_pred CHHHHHHHHHHHhcCCCcCEEEcccCCCC-ccccccCCCchhhhHHHHhhhhhhhhhhhhh
Q 006842 484 GASGAEFVADMLRYNNTISILDLRANGLR-DEVCSGCNGLSFFHSAIYSLKHMLFYSLCIN 543 (629)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~-~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N 543 (629)
+... ..+..+++|+.|++++|.+. +. .+..+..+++|+.+++.++
T Consensus 227 ~~l~-----~~~~~l~~L~~L~l~~N~~~~~~----------~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 227 VLIE-----KALRFSQNLEHFDLRGNGFHCGT----------LRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CEEC-----TTCCCCTTCCEEECTTCCCBHHH----------HHHHHHTCHHHHHHHHHHH
T ss_pred cchh-----hHhhcCCCCCEEEccCCCccCcC----------HHHHHhccccceEEECCCc
Confidence 7532 22445689999999999998 44 6788889999999999854
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=4.3e-22 Score=217.72 Aligned_cols=261 Identities=15% Similarity=0.078 Sum_probs=209.1
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHH
Q 006842 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (629)
Q Consensus 190 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 269 (629)
.+++.|++++|.++... ..+ .++|++|+|++|.|+... . .+++|++|+|++|+|+.. +.
T Consensus 40 ~~l~~L~ls~n~L~~lp-----~~l--~~~L~~L~L~~N~l~~lp-----~---~l~~L~~L~Ls~N~l~~l-----p~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLP-----DCL--PAHITTLVIPDNNLTSLP-----A---LPPELRTLEVSGNQLTSL-----PV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCC-----SCC--CTTCSEEEECSCCCSCCC-----C---CCTTCCEEEECSCCCSCC-----CC-
T ss_pred CCCcEEEecCCCcCccC-----hhh--CCCCcEEEecCCCCCCCC-----C---cCCCCCEEEcCCCcCCcC-----CC-
Confidence 46999999999987432 111 267999999999998542 2 358999999999999863 22
Q ss_pred HhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHH
Q 006842 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (629)
Q Consensus 270 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 349 (629)
.+++|++|+|++|.|+.. +. .+++|+.|++++|.++.++. .+++|++|++++|.++..
T Consensus 99 --~l~~L~~L~Ls~N~l~~l-----~~---~l~~L~~L~L~~N~l~~lp~--------~l~~L~~L~Ls~N~l~~l---- 156 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHL-----PA---LPSGLCKLWIFGNQLTSLPV--------LPPGLQELSVSDNQLASL---- 156 (622)
T ss_dssp --CCTTCCEEEECSCCCCCC-----CC---CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCC----
T ss_pred --CCCCCCEEECcCCcCCCC-----CC---CCCCcCEEECCCCCCCcCCC--------CCCCCCEEECcCCcCCCc----
Confidence 568999999999999752 22 46899999999999987653 358999999999998762
Q ss_pred HHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCH
Q 006842 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (629)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 429 (629)
. ...++|+.|++++|.++.. + ..+++|++|++++|.++. ++. ..++|+.|++++|.++.
T Consensus 157 -~----~~~~~L~~L~L~~N~l~~l-----~---~~~~~L~~L~Ls~N~l~~-----l~~---~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 157 -P----ALPSELCKLWAYNNQLTSL-----P---MLPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS 215 (622)
T ss_dssp -C----CCCTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS
T ss_pred -C----CccCCCCEEECCCCCCCCC-----c---ccCCCCcEEECCCCCCCC-----CCC---ccchhhEEECcCCcccc
Confidence 2 2345799999999999984 3 567899999999999986 222 24799999999999986
Q ss_pred HHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccC
Q 006842 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509 (629)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N 509 (629)
. +. ..++|++|++++|.|+... ..+++|+.|+|++|.|+.... .+++|+.|+|++|
T Consensus 216 l-----~~---~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 216 L-----PA---LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN 271 (622)
T ss_dssp C-----CC---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS
T ss_pred c-----CC---CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC
Confidence 3 22 2488999999999998643 345899999999999986543 3489999999999
Q ss_pred CCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhH
Q 006842 510 GLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAK 549 (629)
Q Consensus 510 ~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 549 (629)
+|+.. |..+.++++|+.|+|++|.+++..
T Consensus 272 ~L~~l-----------p~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 272 QLTRL-----------PESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCCSC-----------CGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CCCcC-----------CHHHhhccccCEEEecCCCCCCcC
Confidence 99844 677899999999999999999763
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=4.6e-24 Score=215.50 Aligned_cols=211 Identities=17% Similarity=0.182 Sum_probs=120.7
Q ss_pred CCceEEEccCCCCCchhHHHHHHHH--HcCCCccEEEccCCCCChHHHHHHHHHHhc--CCCccEEEeeCCCCCHHHHHH
Q 006842 359 GKLAVLDIGNNSISAKGAFHVAEYI--KNCKSLLWINLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGNNIHSKGASA 434 (629)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~ 434 (629)
++|++|++++|.++.. ++..+ ..+++|++|++++|.+++. ...+. .+.. .++|++|++++|+++..
T Consensus 95 ~~L~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~---- 164 (312)
T 1wwl_A 95 SGLQELTLENLEVTGT----APPPLLEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNF---- 164 (312)
T ss_dssp SCCCEEEEEEEBCBSC----CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCC----
T ss_pred CCccEEEccCCcccch----hHHHHHHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccc----
Confidence 3455555555555432 22222 4555666666666665543 11111 1111 25666666666666553
Q ss_pred HHHHhhcCCcccEEECcCCCCChhHHHHHHHHH--hcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCC
Q 006842 435 IARVLKDNSVITSLDLAYNPIGADGAKALSEVL--KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (629)
Q Consensus 435 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 512 (629)
.+..+..+++|++|++++|++.... .+...+ ..+++|++|+|++|.|+..+. .....+..+++|++|++++|++.
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGER--GLISALCPLKFPTLQVLALRNAGMETPSG-VCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHH--HHHHHSCTTSCTTCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEECTTSCCC
T ss_pred hHHHhccCCCCCEEECCCCCcCcch--HHHHHHHhccCCCCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEECCCCcCC
Confidence 2234555666777777777654321 111112 455677777777777763221 11222334477888888888777
Q ss_pred ccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccce
Q 006842 513 DEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAV 592 (629)
Q Consensus 513 ~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L 592 (629)
+..| ...+..+++|++|++++|+++.+ +..+. ++|++|||++|+|++. |. +..+ ++|
T Consensus 242 ~~~~---------~~~~~~l~~L~~L~Ls~N~l~~i---p~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l------~~L 298 (312)
T 1wwl_A 242 DAAG---------APSCDWPSQLNSLNLSFTGLKQV---PKGLP---AKLSVLDLSYNRLDRN-PS-PDEL------PQV 298 (312)
T ss_dssp SSCC---------CSCCCCCTTCCEEECTTSCCSSC---CSSCC---SEEEEEECCSSCCCSC-CC-TTTS------CEE
T ss_pred cccc---------hhhhhhcCCCCEEECCCCccChh---hhhcc---CCceEEECCCCCCCCC-hh-HhhC------CCC
Confidence 6521 12334467788888888877743 33332 6799999999999885 33 3333 579
Q ss_pred eeeeccCCccchh
Q 006842 593 TSLNLANNFLTKF 605 (629)
Q Consensus 593 ~~L~L~~N~i~~~ 605 (629)
++|+|++|+|++.
T Consensus 299 ~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 299 GNLSLKGNPFLDS 311 (312)
T ss_dssp EEEECTTCTTTCC
T ss_pred CEEeccCCCCCCC
Confidence 9999999998865
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=6.8e-25 Score=221.16 Aligned_cols=136 Identities=16% Similarity=0.199 Sum_probs=55.2
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHh
Q 006842 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (629)
Q Consensus 274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (629)
++|++|++++|.++... ...+.++++|++|++++|.++..+.. +..+..+++|++|++++|.++. +...
T Consensus 28 ~~l~~L~L~~n~l~~i~----~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~L~~L~Ls~n~i~~-----l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSSNGLSFKGCC--SQSDFGTTSLKYLDLSFNGVIT-----MSSN 96 (306)
T ss_dssp TTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCEEEEE--EHHHHSCSCCCEEECCSCSEEE-----EEEE
T ss_pred CCCCEEECCCCccCccC----HhHhhccccCCEEECCCCccCcccCc--ccccccccccCEEECCCCcccc-----Chhh
Confidence 34555555555554211 11233445555555555555433100 0112234555555555554433 1111
Q ss_pred hccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCC
Q 006842 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (629)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 428 (629)
+ ..+++|++|++++|.++.... ...+..+++|++|++++|.++.. .+..+..+++|++|++++|.++
T Consensus 97 ~-~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 97 F-LGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp E-ETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC----STTTTTTCTTCCEEECTTCEEG
T ss_pred c-CCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc----chhhcccCcCCCEEECCCCccc
Confidence 1 133345555555544443200 01234444444444444444332 2222333444444444444443
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=9.7e-24 Score=210.36 Aligned_cols=158 Identities=19% Similarity=0.226 Sum_probs=69.7
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCC-CChhHHHHHHH
Q 006842 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS-IGDEGIRALMS 352 (629)
Q Consensus 274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 352 (629)
++|++|++++|.|+... +..+..+++|++|++++|.++.... ..+..+++|++|++++|. ++......+
T Consensus 32 ~~l~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~l~~~~~~~~-- 101 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVP----AASFRACRNLTILWLHSNVLARIDA----AAFTGLALLEQLDLSDNAQLRSVDPATF-- 101 (285)
T ss_dssp TTCSEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSCTTCCCCCTTTT--
T ss_pred CCceEEEeeCCcCCccC----HHHcccCCCCCEEECCCCccceeCH----hhcCCccCCCEEeCCCCCCccccCHHHh--
Confidence 34555666555554321 1223345555555555555544432 234445555555555554 433211111
Q ss_pred hhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHH
Q 006842 353 GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA 432 (629)
Q Consensus 353 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 432 (629)
..+++|++|++++|.++.. .+..+..+++|++|++++|.++.. ....+..+++|++|++++|+++...
T Consensus 102 ---~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~- 169 (285)
T 1ozn_A 102 ---HGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRISSVP- 169 (285)
T ss_dssp ---TTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCEEC-
T ss_pred ---cCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCccccc----CHhHhccCCCccEEECCCCcccccC-
Confidence 2334455555555555443 223344445555555555544432 1122334444555555555444321
Q ss_pred HHHHHHhhcCCcccEEECcCCCCC
Q 006842 433 SAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 433 ~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
...+..+++|++|++++|.++
T Consensus 170 ---~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 170 ---ERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCC
T ss_pred ---HHHhcCccccCEEECCCCccc
Confidence 112333344444444444444
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=7.8e-24 Score=213.38 Aligned_cols=283 Identities=14% Similarity=0.150 Sum_probs=164.3
Q ss_pred ccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhH--HHHHHHh
Q 006842 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEG--IRALMSG 353 (629)
Q Consensus 276 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~--~~~l~~~ 353 (629)
-+.++++++.++.. +.. -.++|++|++++|.++.++. ..+.++++|++|++++|.++..+ ...+
T Consensus 9 ~~~l~c~~~~l~~i-----p~~--~~~~l~~L~L~~n~l~~i~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--- 74 (306)
T 2z66_A 9 GTEIRCNSKGLTSV-----PTG--IPSSATRLELESNKLQSLPH----GVFDKLTQLTKLSLSSNGLSFKGCCSQSD--- 74 (306)
T ss_dssp TTEEECCSSCCSSC-----CSC--CCTTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCEEEEEEHHH---
T ss_pred CCEEEcCCCCcccC-----CCC--CCCCCCEEECCCCccCccCH----hHhhccccCCEEECCCCccCcccCccccc---
Confidence 35677777776432 221 13578888888888776553 33567788888888888776432 1112
Q ss_pred hccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHH
Q 006842 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (629)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 433 (629)
..+++|++|++++|.++. ++..+..+++|++|++++|.++.... ...+..+++|++|++++|.++..
T Consensus 75 --~~~~~L~~L~Ls~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~--- 141 (306)
T 2z66_A 75 --FGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA--- 141 (306)
T ss_dssp --HSCSCCCEEECCSCSEEE-----EEEEEETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC---
T ss_pred --ccccccCEEECCCCcccc-----ChhhcCCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc---
Confidence 134578888888887765 33445677788888888877665310 12455677777888877777654
Q ss_pred HHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCc
Q 006842 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (629)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 513 (629)
.+..+..+++|++|++++|.+++.. +...+..+++|++|++++|.++...+..+. .+++|++|+|++|++++
T Consensus 142 -~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 142 -FNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTAFN----SLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp -STTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTSCCSB
T ss_pred -chhhcccCcCCCEEECCCCcccccc---chhHHhhCcCCCEEECCCCCcCCcCHHHhc----CCCCCCEEECCCCccCc
Confidence 3344556677777777777765411 112234456777777777777665443333 33677777777777766
Q ss_pred cccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCch-hHHHHHHHHhcCCccce
Q 006842 514 EVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDD-GAFAIAQALKANEDVAV 592 (629)
Q Consensus 514 ~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~-~~~~l~~~l~~~~~~~L 592 (629)
. .+..+..+++|+.|++++|++++.. +..+....++|++|+|++|.++.. ....+.++++ ..
T Consensus 214 ~----------~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~-----~~ 276 (306)
T 2z66_A 214 L----------DTFPYKCLNSLQVLDYSLNHIMTSK--KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK-----DQ 276 (306)
T ss_dssp C----------CSGGGTTCTTCCEEECTTSCCCBCS--SSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH-----HT
T ss_pred c----------ChhhccCcccCCEeECCCCCCcccC--HHHHHhhhccCCEEEccCCCeecccChHHHHHHHH-----hh
Confidence 5 3334556666666666666665531 222222223566666666666432 1223333333 23
Q ss_pred eeeeccCCccchhHHHHH
Q 006842 593 TSLNLANNFLTKFGQSAL 610 (629)
Q Consensus 593 ~~L~L~~N~i~~~~~~~l 610 (629)
+.+.+..+.+....|..+
T Consensus 277 ~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 277 RQLLVEVERMECATPSDK 294 (306)
T ss_dssp GGGBSCGGGCBEEESGGG
T ss_pred hhhhccccccccCCchhh
Confidence 344444455554444443
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=4.4e-23 Score=208.33 Aligned_cols=161 Identities=13% Similarity=0.133 Sum_probs=84.6
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHh--hcCCcccEEECcCCCCChhHHHHHH
Q 006842 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL--KDNSVITSLDLAYNPIGADGAKALS 464 (629)
Q Consensus 387 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (629)
++|++|++++|.++.. .+..+..+++|++|++++|++.... .+...+ ..+++|++|++++|.++..+. ...
T Consensus 149 ~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~ 221 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNF----SCEQVRVFPALSTLDLSDNPELGER--GLISALCPLKFPTLQVLALRNAGMETPSG-VCS 221 (312)
T ss_dssp TTCCEEEEESCSCCCC----CTTTCCCCSSCCEEECCSCTTCHHH--HHHHHSCTTSCTTCCEEECTTSCCCCHHH-HHH
T ss_pred CCCcEEEeeCCCCccc----hHHHhccCCCCCEEECCCCCcCcch--HHHHHHHhccCCCCCEEECCCCcCcchHH-HHH
Confidence 4555555555555442 2233444555555555555544321 011122 445556666666665553211 111
Q ss_pred HHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhc
Q 006842 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINY 544 (629)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~ 544 (629)
..+..+++|++|++++|.++...+.. .+..+++|++|+|++|+|+.. |..+. ++|++|++++|+
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~~l~~L~~L~Ls~N~l~~i-----------p~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAP---SCDWPSQLNSLNLSFTGLKQV-----------PKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCS---CCCCCTTCCEEECTTSCCSSC-----------CSSCC--SEEEEEECCSSC
T ss_pred HHHhcCCCCCEEECCCCcCCcccchh---hhhhcCCCCEEECCCCccChh-----------hhhcc--CCceEEECCCCC
Confidence 22233456666666666655432100 011236777777777777633 22222 677777777777
Q ss_pred chhhHHHHHHHhhhhcccceeecCCCCCCch
Q 006842 545 LQGAKCLAQSFKVVNEALTSIDLAFNEIRDD 575 (629)
Q Consensus 545 l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~ 575 (629)
+++.. . +.. .++|++|+|++|.|++.
T Consensus 286 l~~~p---~-~~~-l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 286 LDRNP---S-PDE-LPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCSCC---C-TTT-SCEEEEEECTTCTTTCC
T ss_pred CCCCh---h-Hhh-CCCCCEEeccCCCCCCC
Confidence 77752 2 322 38899999999988863
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=1e-22 Score=202.98 Aligned_cols=223 Identities=19% Similarity=0.167 Sum_probs=127.6
Q ss_pred CEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhh
Q 006842 221 KTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE 300 (629)
Q Consensus 221 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 300 (629)
++++.+++.++.... . ..++|++|++++|.++.... ..+..+++|++|++++|.++... +..+..
T Consensus 14 ~~~~c~~~~l~~ip~-----~--~~~~l~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-----G--IPAASQRIFLHGNRISHVPA----ASFRACRNLTILWLHSNVLARID----AAAFTG 78 (285)
T ss_dssp CEEECCSSCCSSCCT-----T--CCTTCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCEEC----TTTTTT
T ss_pred eEEEcCcCCcccCCc-----C--CCCCceEEEeeCCcCCccCH----HHcccCCCCCEEECCCCccceeC----HhhcCC
Confidence 566666666654321 1 12567777777777665422 23345566777777777665322 334445
Q ss_pred cCCccEEeccCCC-CChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHH
Q 006842 301 NSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (629)
Q Consensus 301 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (629)
+++|++|++++|. ++.... ..+..+++|++|++++|.++.... .....+++|++|++++|.++.. .
T Consensus 79 l~~L~~L~l~~n~~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~----~ 145 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDP----ATFHGLGRLHTLHLDRCGLQELGP-----GLFRGLAALQYLYLQDNALQAL----P 145 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCT----TTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCC----C
T ss_pred ccCCCEEeCCCCCCccccCH----HHhcCCcCCCEEECCCCcCCEECH-----hHhhCCcCCCEEECCCCccccc----C
Confidence 6677777777775 555432 335566677777777776665321 1113455677777777776654 2
Q ss_pred HHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhH
Q 006842 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (629)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (629)
+..+..+++|++|++++|.++.. ....+..+++|++|++++|.++.. .+..+..+++|++|++++|.++...
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSV----PERAFRGLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred HhHhccCCCccEEECCCCccccc----CHHHhcCccccCEEECCCCccccc----CHhHccCcccccEeeCCCCcCCcCC
Confidence 23356667777777777766653 222355566777777777776654 2334455566666666666665543
Q ss_pred HHHHHHHHhcCCCccEEeccCCCC
Q 006842 460 AKALSEVLKFHGNINTLKLGWCQI 483 (629)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~L~~n~i 483 (629)
... +..+++|++|++++|.+
T Consensus 218 ~~~----~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 218 TEA----LAPLRALQYLRLNDNPW 237 (285)
T ss_dssp HHH----HTTCTTCCEEECCSSCE
T ss_pred HHH----cccCcccCEEeccCCCc
Confidence 322 23345555555555554
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.4e-22 Score=215.79 Aligned_cols=246 Identities=15% Similarity=0.092 Sum_probs=145.2
Q ss_pred ccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhc
Q 006842 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLS 355 (629)
Q Consensus 276 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 355 (629)
...++.++..++. ++..+ .+++++|++++|.++.+.. ..|.++++|++|+|++|.++......+
T Consensus 56 ~~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~----- 119 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-----VPQGI--PSNTRYLNLMENNIQMIQA----DTFRHLHHLEVLQLGRNSIRQIEVGAF----- 119 (452)
T ss_dssp SCEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECTTTT-----
T ss_pred CcEEEECCCCcCc-----cCCCC--CCCccEEECcCCcCceECH----HHcCCCCCCCEEECCCCccCCcChhhc-----
Confidence 4667777776642 22211 2577888888888776654 345677788888888887776322222
Q ss_pred cCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCC-CCCHHHHHH
Q 006842 356 SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASA 434 (629)
Q Consensus 356 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~ 434 (629)
..+++|++|+|++|.++.. .+..+..+++|++|++++|.++.. ....+..+++|++|++++| .++...
T Consensus 120 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~~~~l~~i~--- 188 (452)
T 3zyi_A 120 NGLASLNTLELFDNWLTVI----PSGAFEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYIS--- 188 (452)
T ss_dssp TTCTTCCEEECCSSCCSBC----CTTTSSSCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEEC---
T ss_pred cCcccCCEEECCCCcCCcc----ChhhhcccCCCCEEECCCCCccee----CHhHHhcCCcccEEeCCCCCCccccC---
Confidence 4556778888888777764 334456677777777777777653 2234566777777777774 444321
Q ss_pred HHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 435 IARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 435 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
...+..+++|++|++++|.++... .+..+++|++|+|++|.++...+..+.. +++|++|+|++|++.+.
T Consensus 189 -~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 189 -EGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEELEMSGNHFPEIRPGSFHG----LSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp -TTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEEECTTSCCSEECGGGGTT----CTTCCEEECTTSCCCEE
T ss_pred -hhhccCCCCCCEEECCCCcccccc------cccccccccEEECcCCcCcccCcccccC----ccCCCEEEeCCCcCceE
Confidence 123455677777777777766432 1344556666666666665554433332 36666666666666655
Q ss_pred ccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCC
Q 006842 515 VCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEI 572 (629)
Q Consensus 515 ~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i 572 (629)
.+..|..+++|+.|+|++|++++. +.......++|++|+|++|.+
T Consensus 258 ----------~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 258 ----------ERNAFDGLASLVELNLAHNNLSSL---PHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ----------CTTTTTTCTTCCEEECCSSCCSCC---CTTSSTTCTTCCEEECCSSCE
T ss_pred ----------CHHHhcCCCCCCEEECCCCcCCcc---ChHHhccccCCCEEEccCCCc
Confidence 344455555666666666655543 111111225555556655544
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.3e-22 Score=215.25 Aligned_cols=247 Identities=16% Similarity=0.104 Sum_probs=164.2
Q ss_pred CccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhh
Q 006842 275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354 (629)
Q Consensus 275 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 354 (629)
....++.+++.++. ++..+ .++++.|+|++|.++.+.. ..|.++++|++|+|++|.++......+
T Consensus 44 ~~~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~---- 108 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-----VPDGI--STNTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIEIGAF---- 108 (440)
T ss_dssp TSCEEECCSCCCSS-----CCSCC--CTTCSEEECCSCCCCEECT----TTTSSCSSCCEEECCSSCCCEECGGGG----
T ss_pred CCCEEEeCCCCcCc-----CCCCC--CCCCcEEEccCCcCCeeCH----HHhhCCCCCCEEECCCCcCCccChhhc----
Confidence 35677777777743 23222 3678888888888877664 456778888888888888876432222
Q ss_pred ccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCC-CCCHHHHH
Q 006842 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGAS 433 (629)
Q Consensus 355 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~ 433 (629)
..+++|++|+|++|.++.. ....+..+++|++|++++|.++.. ....+..+++|++|++++| .++...
T Consensus 109 -~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~~~~l~~i~-- 177 (440)
T 3zyj_A 109 -NGLANLNTLELFDNRLTTI----PNGAFVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYIS-- 177 (440)
T ss_dssp -TTCSSCCEEECCSSCCSSC----CTTTSCSCSSCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEEC--
T ss_pred -cCCccCCEEECCCCcCCee----CHhHhhccccCceeeCCCCccccc----CHHHhhhCcccCEeCCCCCCCcceeC--
Confidence 4667888888888888874 334567788888888888888764 2335667788888888874 444321
Q ss_pred HHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCc
Q 006842 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (629)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 513 (629)
...+..+++|++|++++|.++... .+..+++|++|+|++|.|+...+..+.. +++|++|+|++|++.+
T Consensus 178 --~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 178 --EGAFEGLSNLRYLNLAMCNLREIP------NLTPLIKLDELDLSGNHLSAIRPGSFQG----LMHLQKLWMIQSQIQV 245 (440)
T ss_dssp --TTTTTTCSSCCEEECTTSCCSSCC------CCTTCSSCCEEECTTSCCCEECTTTTTT----CTTCCEEECTTCCCCE
T ss_pred --cchhhcccccCeecCCCCcCcccc------ccCCCcccCEEECCCCccCccChhhhcc----CccCCEEECCCCceeE
Confidence 124556688888888888776442 1345667777777777777654444433 3777777777777776
Q ss_pred cccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCC
Q 006842 514 EVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEI 572 (629)
Q Consensus 514 ~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i 572 (629)
. .+..|.++++|+.|+|++|++++.. .......++|+.|+|++|.+
T Consensus 246 ~----------~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 246 I----------ERNAFDNLQSLVEINLAHNNLTLLP---HDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp E----------CTTSSTTCTTCCEEECTTSCCCCCC---TTTTSSCTTCCEEECCSSCE
T ss_pred E----------ChhhhcCCCCCCEEECCCCCCCccC---hhHhccccCCCEEEcCCCCc
Confidence 6 4555666677777777777776532 22222226677777777765
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.2e-22 Score=215.38 Aligned_cols=248 Identities=18% Similarity=0.134 Sum_probs=194.9
Q ss_pred CCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHh
Q 006842 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326 (629)
Q Consensus 247 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 326 (629)
....++..+..++.. +..+. ++++.|+|++|.|+... ...+.++++|++|+|++|.++.+.. ..|
T Consensus 44 ~~~~v~c~~~~l~~i-----P~~~~--~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~ 108 (440)
T 3zyj_A 44 QFSKVICVRKNLREV-----PDGIS--TNTRLLNLHENQIQIIK----VNSFKHLRHLEILQLSRNHIRTIEI----GAF 108 (440)
T ss_dssp TSCEEECCSCCCSSC-----CSCCC--TTCSEEECCSCCCCEEC----TTTTSSCSSCCEEECCSSCCCEECG----GGG
T ss_pred CCCEEEeCCCCcCcC-----CCCCC--CCCcEEEccCCcCCeeC----HHHhhCCCCCCEEECCCCcCCccCh----hhc
Confidence 467888888888763 33222 67999999999997543 3456678999999999999988765 457
Q ss_pred cCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCC-CCChHHHH
Q 006842 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAE 405 (629)
Q Consensus 327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 405 (629)
.++++|++|+|++|.++.. .......+++|++|++++|.++.. ....+..+++|++|++++| .++..
T Consensus 109 ~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~~~~l~~i--- 176 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTI-----PNGAFVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYI--- 176 (440)
T ss_dssp TTCSSCCEEECCSSCCSSC-----CTTTSCSCSSCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE---
T ss_pred cCCccCCEEECCCCcCCee-----CHhHhhccccCceeeCCCCccccc----CHHHhhhCcccCEeCCCCCCCccee---
Confidence 7899999999999999863 333335677899999999999885 3446788999999999985 55543
Q ss_pred HHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCH
Q 006842 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (629)
Q Consensus 406 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (629)
-...+..+++|++|++++|.++.. + .+..+++|++|+|++|.++...... +..+++|+.|+|++|.|+.
T Consensus 177 -~~~~~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 177 -SEGAFEGLSNLRYLNLAMCNLREI-----P-NLTPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp -CTTTTTTCSSCCEEECTTSCCSSC-----C-CCTTCSSCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCE
T ss_pred -CcchhhcccccCeecCCCCcCccc-----c-ccCCCcccCEEECCCCccCccChhh----hccCccCCEEECCCCceeE
Confidence 223567789999999999999863 2 3677799999999999998764443 3556899999999999987
Q ss_pred HHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcch
Q 006842 486 SGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQ 546 (629)
Q Consensus 486 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 546 (629)
.....|. .+++|++|+|++|++++. .+..|..+++|+.|+|++|.+.
T Consensus 246 ~~~~~~~----~l~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 246 IERNAFD----NLQSLVEINLAHNNLTLL----------PHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSST----TCTTCCEEECTTSCCCCC----------CTTTTSSCTTCCEEECCSSCEE
T ss_pred EChhhhc----CCCCCCEEECCCCCCCcc----------ChhHhccccCCCEEEcCCCCcc
Confidence 7655544 449999999999999987 5566788899999999999886
No 76
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.1e-22 Score=206.56 Aligned_cols=236 Identities=17% Similarity=0.130 Sum_probs=138.0
Q ss_pred CCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHH
Q 006842 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (629)
Q Consensus 245 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 324 (629)
..+++.|+|++|.++. ++..+.++++|++|+|++|.++ .++..+..+++|++|++++|.++.++ .
T Consensus 80 ~~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~Ls~n~l~~lp-----~ 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLM-----ELPDTMQQFAGLETLTLARNPLRALP-----A 144 (328)
T ss_dssp STTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCC-----CCCSCGGGGTTCSEEEEESCCCCCCC-----G
T ss_pred ccceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCcc-----chhHHHhccCCCCEEECCCCccccCc-----H
Confidence 3667777777777764 3444455677777777777764 22444556677777777777666433 3
Q ss_pred HhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHH
Q 006842 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (629)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (629)
.+..+++|++|++++|.+... ++. .+...++. ..+..+++|++|++++|.++.
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~----~p~-------~~~~~~~~-------------~~~~~l~~L~~L~L~~n~l~~--- 197 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTE----LPE-------PLASTDAS-------------GEHQGLVNLQSLRLEWTGIRS--- 197 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCC----CCS-------CSEEEC-C-------------CCEEESTTCCEEEEEEECCCC---
T ss_pred HHhcCcCCCEEECCCCCCccc----cCh-------hHhhccch-------------hhhccCCCCCEEECcCCCcCc---
Confidence 456667777777776544331 111 11111111 113446677777777776663
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCC
Q 006842 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (629)
Q Consensus 405 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (629)
++..+..+++|++|++++|.++. ++..+..+++|++|++++|.+....+ ..+..+++|++|+|++|.+.
T Consensus 198 --lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~~p----~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 198 --LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRNYP----PIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp --CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCBCC----CCTTCCCCCCEEECTTCTTC
T ss_pred --chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhhhH----HHhcCCCCCCEEECCCCCch
Confidence 45556666777777777777664 33345666777777777766544322 12344566666777666654
Q ss_pred HHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchh
Q 006842 485 ASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (629)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 547 (629)
...+.. +..+++|++|+|++|.+.+. +|..+..+++|+.+++..+.+..
T Consensus 267 ~~~p~~----~~~l~~L~~L~L~~n~~~~~----------iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 267 LTLPLD----IHRLTQLEKLDLRGCVNLSR----------LPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CBCCTT----GGGCTTCCEEECTTCTTCCC----------CCGGGGGSCTTCEEECCGGGSCC
T ss_pred hhcchh----hhcCCCCCEEeCCCCCchhh----------ccHHHhhccCceEEeCCHHHHHH
Confidence 433322 23447777777777777666 55666666666666666555443
No 77
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.2e-22 Score=206.20 Aligned_cols=228 Identities=14% Similarity=0.099 Sum_probs=116.4
Q ss_pred cCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHH
Q 006842 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 380 (629)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 380 (629)
...++.|++++|.++.++ ..+..+++|++|++++|.++. ++..+ ..+++|++|++++|.++. ++
T Consensus 80 ~~~l~~L~L~~n~l~~lp-----~~l~~l~~L~~L~L~~n~l~~-----lp~~~-~~l~~L~~L~Ls~n~l~~-----lp 143 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFP-----DQAFRLSHLQHMTIDAAGLME-----LPDTM-QQFAGLETLTLARNPLRA-----LP 143 (328)
T ss_dssp STTCCEEEEESSCCSSCC-----SCGGGGTTCSEEEEESSCCCC-----CCSCG-GGGTTCSEEEEESCCCCC-----CC
T ss_pred ccceeEEEccCCCchhcC-----hhhhhCCCCCEEECCCCCccc-----hhHHH-hccCCCCEEECCCCcccc-----Cc
Confidence 356677777777665443 234456666666666666653 22222 234456666666666663 44
Q ss_pred HHHHcCCCccEEEccCCCCChHHHHHHHHHHh---------cCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECc
Q 006842 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALK---------QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA 451 (629)
Q Consensus 381 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~---------~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 451 (629)
..+..+++|++|++++|.+... ++..+. .+++|++|++++|.++. ++..+..+++|++|+++
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTE----LPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-----LPASIANLQNLKSLKIR 214 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCC----CCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-----CCGGGGGCTTCCEEEEE
T ss_pred HHHhcCcCCCEEECCCCCCccc----cChhHhhccchhhhccCCCCCEEECcCCCcCc-----chHhhcCCCCCCEEEcc
Confidence 5556666666666666543332 222222 24555555555555542 33334444555555555
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHh
Q 006842 452 YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYS 531 (629)
Q Consensus 452 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~ 531 (629)
+|.++... ..+..+ ++|++|+|++|.+.+. .|..+..
T Consensus 215 ~N~l~~l~-----~~l~~l----------------------------~~L~~L~Ls~n~~~~~----------~p~~~~~ 251 (328)
T 4fcg_A 215 NSPLSALG-----PAIHHL----------------------------PKLEELDLRGCTALRN----------YPPIFGG 251 (328)
T ss_dssp SSCCCCCC-----GGGGGC----------------------------TTCCEEECTTCTTCCB----------CCCCTTC
T ss_pred CCCCCcCc-----hhhccC----------------------------CCCCEEECcCCcchhh----------hHHHhcC
Confidence 55544211 112333 4555555555544444 3333444
Q ss_pred hhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchh
Q 006842 532 LKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 605 (629)
Q Consensus 532 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~ 605 (629)
+++|+.|++++|.+.+. ++..+... ++|++|||++|.+.+.+|..+..+ ++|+.+++..|.+...
T Consensus 252 l~~L~~L~L~~n~~~~~--~p~~~~~l-~~L~~L~L~~n~~~~~iP~~l~~L------~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLT--LPLDIHRL-TQLEKLDLRGCVNLSRLPSLIAQL------PANCIILVPPHLQAQL 316 (328)
T ss_dssp CCCCCEEECTTCTTCCB--CCTTGGGC-TTCCEEECTTCTTCCCCCGGGGGS------CTTCEEECCGGGSCC-
T ss_pred CCCCCEEECCCCCchhh--cchhhhcC-CCCCEEeCCCCCchhhccHHHhhc------cCceEEeCCHHHHHHH
Confidence 44555555555444432 22223222 566666666666666666665554 4566666666655543
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=4.4e-22 Score=200.82 Aligned_cols=240 Identities=15% Similarity=0.096 Sum_probs=148.1
Q ss_pred CccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHH--HcCCCccEEEccCCCCChHHHHHHH
Q 006842 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI--KNCKSLLWINLYMNDIGDEGAEKIA 408 (629)
Q Consensus 331 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~ 408 (629)
.++.|.+.++.+++..+..+...+.. ++|++|++++|.++.. .+..+ ..+++|++|++++|.+++.....-.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~----~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAY--SRLKELTLEDLKITGT----MPPLPLEATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHH--SCCCEEEEESCCCBSC----CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhccc--CceeEEEeeCCEeccc----hhhhhhhccCCCCCEEEeecccccchhhhhHH
Confidence 45666666666666555555444332 2477777777766654 33333 5566777777777776652111111
Q ss_pred HHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHH
Q 006842 409 DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA 488 (629)
Q Consensus 409 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 488 (629)
..+..+++|++|++++|.++.. .+..+..+++|++|+|++|++...........+..+++|++|+|++|.++..+.
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 214 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAF----SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG 214 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCC----CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred HHhhhccCCCEEEeeCCCcchh----hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH
Confidence 2334567777777777777654 334455667788888888876543221111122456778888888888764332
Q ss_pred HHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhh---hhhhhhhhhhhcchhhHHHHHHHhhhhccccee
Q 006842 489 EFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSL---KHMLFYSLCINYLQGAKCLAQSFKVVNEALTSI 565 (629)
Q Consensus 489 ~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L 565 (629)
. ....+..+++|++|+|++|++++..|. .+..+ ++|++|++++|+++.+ +..+. ++|++|
T Consensus 215 ~-~~~l~~~l~~L~~L~Ls~N~l~~~~p~----------~~~~~~~~~~L~~L~Ls~N~l~~l---p~~~~---~~L~~L 277 (310)
T 4glp_A 215 V-CAALAAAGVQPHSLDLSHNSLRATVNP----------SAPRCMWSSALNSLNLSFAGLEQV---PKGLP---AKLRVL 277 (310)
T ss_dssp H-HHHHHHHTCCCSSEECTTSCCCCCCCS----------CCSSCCCCTTCCCEECCSSCCCSC---CSCCC---SCCSCE
T ss_pred H-HHHHHhcCCCCCEEECCCCCCCccchh----------hHHhccCcCcCCEEECCCCCCCch---hhhhc---CCCCEE
Confidence 2 111234458888888888888877333 33333 6888888888888853 33332 789999
Q ss_pred ecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchh
Q 006842 566 DLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 605 (629)
Q Consensus 566 dLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~ 605 (629)
||++|+|++. +. +... ++|++|+|++|+|++.
T Consensus 278 ~Ls~N~l~~~-~~-~~~l------~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 278 DLSSNRLNRA-PQ-PDEL------PEVDNLTLDGNPFLVP 309 (310)
T ss_dssp ECCSCCCCSC-CC-TTSC------CCCSCEECSSTTTSCC
T ss_pred ECCCCcCCCC-ch-hhhC------CCccEEECcCCCCCCC
Confidence 9999999873 21 2111 4799999999998864
No 79
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=5.2e-22 Score=211.34 Aligned_cols=247 Identities=19% Similarity=0.125 Sum_probs=188.8
Q ss_pred CCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhc
Q 006842 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (629)
Q Consensus 248 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 327 (629)
...++.++..++.. +..+ .+++++|+|++|.|+... +..+..+++|++|++++|.++.+.. ..|.
T Consensus 56 ~~~v~c~~~~l~~i-----P~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-----PQGI--PSNTRYLNLMENNIQMIQ----ADTFRHLHHLEVLQLGRNSIRQIEV----GAFN 120 (452)
T ss_dssp SCEEECCSSCCSSC-----CSCC--CTTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTT
T ss_pred CcEEEECCCCcCcc-----CCCC--CCCccEEECcCCcCceEC----HHHcCCCCCCCEEECCCCccCCcCh----hhcc
Confidence 45667776666642 2211 257999999999997533 4456678999999999999987764 4567
Q ss_pred CCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCC-CCChHHHHH
Q 006842 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEK 406 (629)
Q Consensus 328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~ 406 (629)
++++|++|+|++|.++.. .......+++|++|+|++|.++.. ....+..+++|++|++++| .++..
T Consensus 121 ~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~~~~l~~i---- 187 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVI-----PSGAFEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYI---- 187 (452)
T ss_dssp TCTTCCEEECCSSCCSBC-----CTTTSSSCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE----
T ss_pred CcccCCEEECCCCcCCcc-----ChhhhcccCCCCEEECCCCCccee----CHhHHhcCCcccEEeCCCCCCcccc----
Confidence 889999999999998863 333335677899999999999875 3446788999999999984 55543
Q ss_pred HHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHH
Q 006842 407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (629)
Q Consensus 407 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (629)
-...+..+++|++|++++|+++.. + .+..+++|++|+|++|.++...... +..+++|+.|+|++|.++..
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDM-----P-NLTPLVGLEELEMSGNHFPEIRPGS----FHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSC-----C-CCTTCTTCCEEECTTSCCSEECGGG----GTTCTTCCEEECTTSCCCEE
T ss_pred ChhhccCCCCCCEEECCCCccccc-----c-cccccccccEEECcCCcCcccCccc----ccCccCCCEEEeCCCcCceE
Confidence 123466788999999999998864 2 3667789999999999998764443 45568999999999999877
Q ss_pred HHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcch
Q 006842 487 GAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQ 546 (629)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 546 (629)
.+..+. .+++|++|+|++|++++. .+..|..+++|+.|+|++|.+.
T Consensus 258 ~~~~~~----~l~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 258 ERNAFD----GLASLVELNLAHNNLSSL----------PHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTTTT----TCTTCCEEECCSSCCSCC----------CTTSSTTCTTCCEEECCSSCEE
T ss_pred CHHHhc----CCCCCCEEECCCCcCCcc----------ChHHhccccCCCEEEccCCCcC
Confidence 655544 349999999999999877 4556778899999999999876
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=4.4e-22 Score=213.19 Aligned_cols=148 Identities=23% Similarity=0.168 Sum_probs=75.0
Q ss_pred CccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhh
Q 006842 275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354 (629)
Q Consensus 275 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 354 (629)
+|++|+|++|.|++. .+..+..+++|++|+|++|.++.... +..+++|++|+|++|.+++..
T Consensus 35 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~-------- 96 (487)
T 3oja_A 35 NVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL-------- 96 (487)
T ss_dssp GCCEEECCSSCCCCC----CGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEE--------
T ss_pred CccEEEeeCCcCCCC----CHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCC--------
Confidence 566666666666532 12344455666666666666554321 445566666666666554421
Q ss_pred ccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHH
Q 006842 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434 (629)
Q Consensus 355 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 434 (629)
..++|++|++++|.++... + ..+++|++|++++|.+++. .+..+..+++|++|++++|.++...
T Consensus 97 --~~~~L~~L~L~~N~l~~~~----~---~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~--- 160 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVS----C---SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDTVN--- 160 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEE----E---CCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEEECTTSCCCEEE---
T ss_pred --CCCCcCEEECcCCcCCCCC----c---cccCCCCEEECCCCCCCCC----CchhhcCCCCCCEEECCCCCCCCcC---
Confidence 1235666666666655531 1 2345555555555555543 2333444555555555555555431
Q ss_pred HHHHhh-cCCcccEEECcCCCCCh
Q 006842 435 IARVLK-DNSVITSLDLAYNPIGA 457 (629)
Q Consensus 435 l~~~l~-~~~~L~~L~Ls~n~i~~ 457 (629)
+..+. .+++|++|+|++|.|+.
T Consensus 161 -~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 161 -FAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp -GGGGGGGTTTCCEEECTTSCCCE
T ss_pred -hHHHhhhCCcccEEecCCCcccc
Confidence 11121 34555555555555543
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2.3e-21 Score=207.63 Aligned_cols=235 Identities=22% Similarity=0.218 Sum_probs=139.2
Q ss_pred CCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHh
Q 006842 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326 (629)
Q Consensus 247 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 326 (629)
+|++|+|++|.+++.. +..+..+++|++|+|++|.+++.. + +..+++|++|++++|.++..+
T Consensus 35 ~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~--l~~l~~L~~L~Ls~N~l~~l~-------- 96 (487)
T 3oja_A 35 NVKELDLSGNPLSQIS----AADLAPFTKLELLNLSSNVLYETL----D--LESLSTLRTLDLNNNYVQELL-------- 96 (487)
T ss_dssp GCCEEECCSSCCCCCC----GGGGTTCTTCCEEECTTSCCEEEE----E--CTTCTTCCEEECCSSEEEEEE--------
T ss_pred CccEEEeeCCcCCCCC----HHHHhCCCCCCEEEeeCCCCCCCc----c--cccCCCCCEEEecCCcCCCCC--------
Confidence 4555555555555431 123344455566666655554321 0 345566666666666554433
Q ss_pred cCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHH
Q 006842 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK 406 (629)
Q Consensus 327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 406 (629)
..++|++|++++|.++.... ..+++|+.|++++|.++.. .+..+..+++|++|++++|.+++.
T Consensus 97 -~~~~L~~L~L~~N~l~~~~~--------~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~---- 159 (487)
T 3oja_A 97 -VGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDTV---- 159 (487)
T ss_dssp -ECTTCCEEECCSSCCCCEEE--------CCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEEECTTSCCCEE----
T ss_pred -CCCCcCEEECcCCcCCCCCc--------cccCCCCEEECCCCCCCCC----CchhhcCCCCCCEEECCCCCCCCc----
Confidence 23566666666666655311 2234677777777777664 344456667777777777777664
Q ss_pred HHHHHh-cCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCH
Q 006842 407 IADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (629)
Q Consensus 407 l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (629)
.+..+. .+++|++|+|++|.|+.. .....+++|++|+|++|.++..... +..+++|+.|+|++|.++.
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEECGG-----GGGGTTCSEEECTTSCCCE
T ss_pred ChHHHhhhCCcccEEecCCCccccc------cccccCCCCCEEECCCCCCCCCCHh-----HcCCCCccEEEecCCcCcc
Confidence 233333 466777777777777653 1123457777777777777654322 3445677777777777764
Q ss_pred HHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhh
Q 006842 486 SGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLC 541 (629)
Q Consensus 486 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls 541 (629)
.. ..+..+++|+.|++++|.+... ..+..+..++.|+.+++.
T Consensus 229 lp-----~~l~~l~~L~~L~l~~N~l~c~---------~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 IE-----KALRFSQNLEHFDLRGNGFHCG---------TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EC-----TTCCCCTTCCEEECTTCCBCHH---------HHHHHHTTCHHHHHHHHH
T ss_pred cc-----hhhccCCCCCEEEcCCCCCcCc---------chHHHHHhCCCCcEEecc
Confidence 22 2234457888888888888722 156677778888888776
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.7e-21 Score=196.52 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=29.8
Q ss_pred CccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCC
Q 006842 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG 231 (629)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 231 (629)
.++.+.+.++.+++..+..+...+. +++|++|++++|.++......+.. ..+++|++|+|++|.++
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~ 130 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWA 130 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCS
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEeccchhhhhhh--ccCCCCCEEEeeccccc
Confidence 3455555555555555444443322 234555555555544221111100 23444555555555554
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=7.4e-19 Score=176.74 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=66.0
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHh
Q 006842 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (629)
Q Consensus 274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (629)
++|++|++++|.++.. ..+..+++|++|++++|.++..+. +..+++|++|++++|.+++.. .
T Consensus 41 ~~L~~L~l~~~~i~~l------~~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~~~------~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS------A 102 (308)
T ss_dssp HTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG------G
T ss_pred CCcCEEEeeCCCccCc------hhhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCCch------h
Confidence 3455555555555431 123345555555555555544332 344555555555555554421 1
Q ss_pred hccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHH
Q 006842 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (629)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 433 (629)
+ ..+++|++|++++|.++.. + .+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..
T Consensus 103 ~-~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~-- 167 (308)
T 1h6u_A 103 I-AGLQSIKTLDLTSTQITDV-----T-PLAGLSNLQVLYLDLNQITNI-----S-PLAGLTNLQYLSIGNAQVSDLT-- 167 (308)
T ss_dssp G-TTCTTCCEEECTTSCCCCC-----G-GGTTCTTCCEEECCSSCCCCC-----G-GGGGCTTCCEEECCSSCCCCCG--
T ss_pred h-cCCCCCCEEECCCCCCCCc-----h-hhcCCCCCCEEECCCCccCcC-----c-cccCCCCccEEEccCCcCCCCh--
Confidence 1 2334455555555555442 1 144445555555555544442 1 1344444555555555444321
Q ss_pred HHHHHhhcCCcccEEECcCCCCC
Q 006842 434 AIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
. +..+++|++|++++|.++
T Consensus 168 ---~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 168 ---P-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ---G-GTTCTTCCEEECCSSCCC
T ss_pred ---h-hcCCCCCCEEECCCCccC
Confidence 1 334444444444444444
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=4.3e-19 Score=178.48 Aligned_cols=193 Identities=21% Similarity=0.218 Sum_probs=137.5
Q ss_pred CCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHH
Q 006842 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (629)
Q Consensus 328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 407 (629)
.+++|++|++++|.++... .+ ..+++|++|++++|.+++. +. +..+++|++|++++|.+++.
T Consensus 39 ~l~~L~~L~l~~~~i~~l~------~~-~~l~~L~~L~L~~n~i~~~-----~~-~~~l~~L~~L~L~~n~l~~~----- 100 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE------GV-QYLNNLIGLELKDNQITDL-----AP-LKNLTKITELELSGNPLKNV----- 100 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT------TG-GGCTTCCEEECCSSCCCCC-----GG-GTTCCSCCEEECCSCCCSCC-----
T ss_pred HcCCcCEEEeeCCCccCch------hh-hccCCCCEEEccCCcCCCC-----hh-HccCCCCCEEEccCCcCCCc-----
Confidence 3567888999988887621 12 3456788888888888874 23 77888888888888888773
Q ss_pred HHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHH
Q 006842 408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487 (629)
Q Consensus 408 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 487 (629)
..+..+++|++|++++|.++... .+..+++|++|++++|.++.... +..+++|++|++++|.+++..
T Consensus 101 -~~~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 101 -SAIAGLQSIKTLDLTSTQITDVT------PLAGLSNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp -GGGTTCTTCCEEECTTSCCCCCG------GGTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCG
T ss_pred -hhhcCCCCCCEEECCCCCCCCch------hhcCCCCCCEEECCCCccCcCcc------ccCCCCccEEEccCCcCCCCh
Confidence 24677888888888888887732 26677888888888888876543 456678888888888877643
Q ss_pred HHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeec
Q 006842 488 AEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDL 567 (629)
Q Consensus 488 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdL 567 (629)
. +..+++|++|++++|++++. . .+..+++|+.|++++|++++..+ +. .+++|++|++
T Consensus 168 ~------l~~l~~L~~L~l~~n~l~~~----------~--~l~~l~~L~~L~L~~N~l~~~~~----l~-~l~~L~~L~l 224 (308)
T 1h6u_A 168 P------LANLSKLTTLKADDNKISDI----------S--PLASLPNLIEVHLKNNQISDVSP----LA-NTSNLFIVTL 224 (308)
T ss_dssp G------GTTCTTCCEEECCSSCCCCC----------G--GGGGCTTCCEEECTTSCCCBCGG----GT-TCTTCCEEEE
T ss_pred h------hcCCCCCCEEECCCCccCcC----------h--hhcCCCCCCEEEccCCccCcccc----cc-CCCCCCEEEc
Confidence 3 44558888888888888766 1 15666777777777777766542 22 2266777777
Q ss_pred CCCCCCc
Q 006842 568 AFNEIRD 574 (629)
Q Consensus 568 s~N~i~~ 574 (629)
++|.+++
T Consensus 225 ~~N~i~~ 231 (308)
T 1h6u_A 225 TNQTITN 231 (308)
T ss_dssp EEEEEEC
T ss_pred cCCeeec
Confidence 7776655
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=1.1e-20 Score=187.19 Aligned_cols=208 Identities=17% Similarity=0.115 Sum_probs=101.9
Q ss_pred CCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHH
Q 006842 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409 (629)
Q Consensus 330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 409 (629)
++|++|++++|.++......+ ..+++|++|++++|.++.. .+..+..+++|++|++++|.++.. .+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~ 94 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSF-----FSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQSL----ALG 94 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTT-----TTCTTCSEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCEE----CTT
T ss_pred CCccEEECCCCcccccCHhHh-----ccccCCcEEECCCCcCCcc----CHHHccCCcCCCEEECCCCccCcc----Chh
Confidence 356666666666655322111 3445566666666666653 223445566666666666666553 223
Q ss_pred HHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHH
Q 006842 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE 489 (629)
Q Consensus 410 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 489 (629)
.+..+++|++|++++|.++... ...+..+++|++|++++|.++... +...+..+
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l------------------- 148 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLE----NFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNL------------------- 148 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGC-------------------
T ss_pred hhcCCccccEEECCCCCccccC----chhcccCCCCCEEECcCCccceec---CchhhccC-------------------
Confidence 3445556666666666555421 112344455555555555554321 01122333
Q ss_pred HHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhh----hhhhhhhcchhhHHHHHHHhhhhccccee
Q 006842 490 FVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHML----FYSLCINYLQGAKCLAQSFKVVNEALTSI 565 (629)
Q Consensus 490 ~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L 565 (629)
++|++|++++|++++. .+..+..+++|+ .|++++|.+++.. ...... .+|++|
T Consensus 149 ---------~~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~l~l~L~ls~n~l~~~~---~~~~~~-~~L~~L 205 (276)
T 2z62_A 149 ---------TNLEHLDLSSNKIQSI----------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQ---PGAFKE-IRLKEL 205 (276)
T ss_dssp ---------TTCCEEECCSSCCCEE----------CGGGGHHHHTCTTCCEEEECCSSCCCEEC---TTSSCS-CCEEEE
T ss_pred ---------CCCCEEECCCCCCCcC----------CHHHhhhhhhccccceeeecCCCcccccC---ccccCC-CcccEE
Confidence 4455555555554444 233344444444 4445555544421 111111 356666
Q ss_pred ecCCCCCCchhHHHHHHHHhcCCccceeeeeccCCccchh
Q 006842 566 DLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 605 (629)
Q Consensus 566 dLs~N~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~ 605 (629)
+|++|+|++..+..+... .+|++|+|++|+++..
T Consensus 206 ~L~~n~l~~~~~~~~~~l------~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRL------TSLQKIWLHTNPWDCS 239 (276)
T ss_dssp ECCSSCCSCCCTTTTTTC------CSCCEEECCSSCBCCC
T ss_pred ECCCCceeecCHhHhccc------ccccEEEccCCccccc
Confidence 666666665433333222 3566666666666643
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=4.5e-20 Score=182.82 Aligned_cols=135 Identities=20% Similarity=0.189 Sum_probs=58.9
Q ss_pred CccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhh
Q 006842 275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354 (629)
Q Consensus 275 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 354 (629)
+|++|++++|.++... +..+..+++|++|++++|.++.... ..+..+++|++|++++|.++......+
T Consensus 29 ~l~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~---- 96 (276)
T 2z62_A 29 STKNLDLSFNPLRHLG----SYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAF---- 96 (276)
T ss_dssp TCCEEECTTCCCCEEC----TTTTTTCTTCSEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTT----
T ss_pred CccEEECCCCcccccC----HhHhccccCCcEEECCCCcCCccCH----HHccCCcCCCEEECCCCccCccChhhh----
Confidence 4555666655554322 1123345555555555555544432 223445555555555555544211111
Q ss_pred ccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCH
Q 006842 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (629)
Q Consensus 355 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 429 (629)
..+++|++|++++|.++.. .+..+..+++|++|++++|.+++.. ++..+..+++|++|++++|+++.
T Consensus 97 -~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 97 -SGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp -TTCTTCCEEECTTSCCCCS----TTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCE
T ss_pred -cCCccccEEECCCCCcccc----CchhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCc
Confidence 2334455555555544442 1112344444555555544443310 12233344444444444444443
No 87
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.74 E-value=2.9e-17 Score=151.55 Aligned_cols=148 Identities=22% Similarity=0.234 Sum_probs=115.6
Q ss_pred HHHHHHHHHhcCCccEEEccCC-CCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCC
Q 006842 151 KQTLNEFAKELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP 229 (629)
Q Consensus 151 ~~~l~~~~~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 229 (629)
.+.+.+.+...+.|++|+|++| .+++.++..+++.+..+++|++|+|++|.|++.+...++..+..+++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3456677777788888888888 888888888888888888888888888888888888888888777888888888888
Q ss_pred CChhHHHHHHHHHhhCCCCCEEEe--eccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhh
Q 006842 230 IGDEGVKCLCDILVDNAGVERLQL--SSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE 300 (629)
Q Consensus 230 i~~~~~~~l~~~l~~~~~L~~L~L--~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 300 (629)
|++.+...++..+..+++|++|+| ++|.|++.+...+...+..++.|++|+|++|.|++.+. +.+.+..
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~--i~~~L~~ 175 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMN 175 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHH--HHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHH--HHHHHHh
Confidence 888888888888877788888888 77888888888888887777888888888887765542 4444443
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=5.9e-20 Score=182.94 Aligned_cols=190 Identities=17% Similarity=0.110 Sum_probs=95.7
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHh
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (629)
+++.|++++|.++.. .+..+..+++|++|++++|.++.. +. ...+++|++|++++|.|+. ++..+
T Consensus 32 ~l~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~-----~~-~~~l~~L~~L~Ls~N~l~~-----l~~~~ 96 (290)
T 1p9a_G 32 DTTILHLSENLLYTF----SLATLMPYTRLTQLNLDRAELTKL-----QV-DGTLPVLGTLDLSHNQLQS-----LPLLG 96 (290)
T ss_dssp TCCEEECTTSCCSEE----EGGGGTTCTTCCEEECTTSCCCEE-----EC-CSCCTTCCEEECCSSCCSS-----CCCCT
T ss_pred CCCEEEcCCCcCCcc----CHHHhhcCCCCCEEECCCCccCcc-----cC-CCCCCcCCEEECCCCcCCc-----Cchhh
Confidence 455555555555543 223344555555555555555442 11 1344555555555555553 23334
Q ss_pred hcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccC
Q 006842 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGC 519 (629)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~ 519 (629)
..+++|++|++++|+|+...... +..+++|++|+|++|+++......+. .+++|+.|+|++|+|+..
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~N~l~~l----- 163 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLPPGLLT----PTPKLEKLSLANNNLTEL----- 163 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCCTTTTT----TCTTCCEEECTTSCCSCC-----
T ss_pred ccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCCccChhhcc----cccCCCEEECCCCcCCcc-----
Confidence 44555566666665555332211 23345566666666655544332222 236666666666666654
Q ss_pred CCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCc-hhHHHHHHHHhc
Q 006842 520 NGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRD-DGAFAIAQALKA 586 (629)
Q Consensus 520 ~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~-~~~~~l~~~l~~ 586 (629)
.+..|..+++|+.|++++|+++.+ +..++.. .+|+.|+|++|.+.. .....+..++.+
T Consensus 164 -----~~~~~~~l~~L~~L~L~~N~l~~i---p~~~~~~-~~L~~l~L~~Np~~C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 164 -----PAGLLNGLENLDTLLLQENSLYTI---PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQD 222 (290)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCCCCC---CTTTTTT-CCCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred -----CHHHhcCcCCCCEEECCCCcCCcc---Chhhccc-ccCCeEEeCCCCccCcCccHHHHHHHHh
Confidence 333455566666666666666542 3333322 567777777776542 223344444443
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=2.3e-19 Score=177.19 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=48.8
Q ss_pred hcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHH
Q 006842 412 KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV 491 (629)
Q Consensus 412 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 491 (629)
..+++|++|++++|.++.. ....+..+++|++|++++|.++..... .+..+++|++|++++|.++...+..+
T Consensus 130 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSL----PKGVFDKLTNLTELDLSYNQLQSLPEG----VFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ccCCCCCEEECCCCccCcc----CHHHhccCccCCEEECCCCCcCccCHH----HhcCCccCCEEECCCCcCCccCHHHH
Confidence 3344444444444444432 111233344455555555544432211 11233455555555555544332222
Q ss_pred HHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhh
Q 006842 492 ADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (629)
Q Consensus 492 ~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 548 (629)
..+++|++|++++|.+.+. +++|+.|++..|.++|.
T Consensus 202 ----~~l~~L~~L~l~~N~~~~~-----------------~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 202 ----DRLTSLQYIWLHDNPWDCT-----------------CPGIRYLSEWINKHSGV 237 (272)
T ss_dssp ----TTCTTCCEEECCSSCBCCC-----------------TTTTHHHHHHHHHTGGG
T ss_pred ----hCCcCCCEEEccCCCcccc-----------------CcHHHHHHHHHHhCCCc
Confidence 2235666666666655544 33456666666666554
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=4.3e-19 Score=175.25 Aligned_cols=203 Identities=18% Similarity=0.159 Sum_probs=135.8
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHh
Q 006842 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (629)
Q Consensus 274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (629)
++|+.|++++|.++.. ..+..+++|++|++++|.++..+ .+..+++|++|++++|.++.. ...
T Consensus 41 ~~L~~L~l~~~~i~~~------~~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~L~~n~l~~~-----~~~ 103 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV------QGIQYLPNVRYLALGGNKLHDIS------ALKELTNLTYLILTGNQLQSL-----PNG 103 (272)
T ss_dssp TTCCEEECTTSCCCCC------TTGGGCTTCCEEECTTSCCCCCG------GGTTCTTCCEEECTTSCCCCC-----CTT
T ss_pred cceeeeeeCCCCcccc------cccccCCCCcEEECCCCCCCCch------hhcCCCCCCEEECCCCccCcc-----Chh
Confidence 6788888888877542 23556778888888888776642 466777888888888877653 222
Q ss_pred hccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHH
Q 006842 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (629)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 433 (629)
....+++|++|++++|.++.. .+..+..+++|++|++++|.++.. .+..+..+++|++|++++|+++..
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~--- 172 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSL----PDGVFDKLTNLTYLNLAHNQLQSL----PKGVFDKLTNLTELDLSYNQLQSL--- 172 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC---
T ss_pred HhcCCcCCCEEECCCCcCCcc----CHHHhccCCCCCEEECCCCccCcc----CHHHhccCccCCEEECCCCCcCcc---
Confidence 224556788888888877764 334456777888888888877753 223356677788888888877754
Q ss_pred HHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCc
Q 006842 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (629)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 513 (629)
....+..+++|++|++++|.++..... .+..+++|++|++++|.+.. .|++|+.|+++.|.+.+
T Consensus 173 -~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~~~~-----------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 173 -PEGVFDKLTQLKDLRLYQNQLKSVPDG----VFDRLTSLQYIWLHDNPWDC-----------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCBCC-----------CTTTTHHHHHHHHHTGG
T ss_pred -CHHHhcCCccCCEEECCCCcCCccCHH----HHhCCcCCCEEEccCCCccc-----------cCcHHHHHHHHHHhCCC
Confidence 223355667788888888877654332 23455778888888887643 24677777777787777
Q ss_pred cccccCC
Q 006842 514 EVCSGCN 520 (629)
Q Consensus 514 ~~~~~~~ 520 (629)
.+|..+.
T Consensus 237 ~ip~~~~ 243 (272)
T 3rfs_A 237 VVRNSAG 243 (272)
T ss_dssp GBBCTTS
T ss_pred cccCccc
Confidence 7555443
No 91
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.72 E-value=5.9e-17 Score=149.51 Aligned_cols=140 Identities=21% Similarity=0.207 Sum_probs=107.8
Q ss_pred HHHHHHHhccCCCccEEEeccC-CCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccC
Q 006842 179 LFFLAESLGYNQTAEEVSFAAN-GITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVD 257 (629)
Q Consensus 179 ~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 257 (629)
.+.+...+..+++|++|+|++| .|++.+...+...+..+++|++|+|++|.|++.+...++..+..+++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4456777777788888888887 788888888887777777888888888888888877777777777778888888888
Q ss_pred CChHHHHHHHHHHhcCCCccEEEe--ccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhh
Q 006842 258 LRDEGAKAIAELLKNNSILRVLEL--NNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG 318 (629)
Q Consensus 258 l~~~~~~~l~~~l~~~~~L~~L~L--~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 318 (629)
|++.+...++..+..++.|++|+| ++|.|++.+...+.+.+..+++|++|++++|.++..+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 888777777777777777888887 6777777777777777777777777777777765543
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.8e-19 Score=177.73 Aligned_cols=130 Identities=21% Similarity=0.208 Sum_probs=56.0
Q ss_pred CccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHH
Q 006842 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382 (629)
Q Consensus 303 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 382 (629)
..+.++++++.++.++. . -.+++++|++++|.++... ......+++|++|++++|.++.. ....
T Consensus 17 ~~~~l~~~~~~l~~ip~-----~--~~~~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~i----~~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-----N--IPADTKKLDLQSNKLSSLP-----SKAFHRLTKLRLLYLNDNKLQTL----PAGI 80 (270)
T ss_dssp TTTEEECTTSCCSSCCS-----C--CCTTCSEEECCSSCCSCCC-----TTSSSSCTTCCEEECCSSCCSCC----CTTT
T ss_pred CCCEEEccCCCCCccCC-----C--CCCCCCEEECcCCCCCeeC-----HHHhcCCCCCCEEECCCCccCee----Chhh
Confidence 34555555555554331 0 1134555555555554421 11112344555555555555442 1122
Q ss_pred HHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCC
Q 006842 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
+..+++|++|++++|.++.. ....+..+++|++|++++|.++... +..+..+++|++|++++|.++
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQAL----PIGVFDQLVNLAELRLDRNQLKSLP----PRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCC----CTTTTTTCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCcCCcC----CHhHcccccCCCEEECCCCccCeeC----HHHhCcCcCCCEEECCCCcCC
Confidence 34445555555555544432 1122333444555555555444321 122333344444444444443
No 93
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=5.8e-19 Score=175.75 Aligned_cols=176 Identities=22% Similarity=0.204 Sum_probs=73.2
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHH
Q 006842 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (629)
Q Consensus 219 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 298 (629)
++++|+|++|.|+... ...+..+++|++|+|++|.++.... ...+++|++|++++|.|+. ++..+
T Consensus 32 ~l~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~~-----l~~~~ 96 (290)
T 1p9a_G 32 DTTILHLSENLLYTFS----LATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQS-----LPLLG 96 (290)
T ss_dssp TCCEEECTTSCCSEEE----GGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCSS-----CCCCT
T ss_pred CCCEEEcCCCcCCccC----HHHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCCc-----Cchhh
Confidence 3445555555444321 1222333445555555554443211 0233445555555555431 12222
Q ss_pred hhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHH
Q 006842 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (629)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (629)
..+++|++|++++|.++..+. ..|..+++|++|++++|.++.. .......+++|+.|++++|+++..
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~l---- 163 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGNELKTL-----PPGLLTPTPKLEKLSLANNNLTEL---- 163 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTTSCCSCC----
T ss_pred ccCCCCCEEECCCCcCcccCH----HHHcCCCCCCEEECCCCCCCcc-----ChhhcccccCCCEEECCCCcCCcc----
Confidence 334445555555554444332 2233445555555555554431 111112333444555554444442
Q ss_pred HHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCC
Q 006842 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (629)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 427 (629)
.+..+..+++|++|++++|.++. ++..+....+|++|++++|.+
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCB
T ss_pred CHHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCCCc
Confidence 11223344444444444444443 233333334444444444443
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=4.1e-19 Score=175.22 Aligned_cols=184 Identities=20% Similarity=0.190 Sum_probs=105.4
Q ss_pred CCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHH
Q 006842 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (629)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 381 (629)
+++++|++++|.++..+. ..+..+++|++|++++|.++. +....+..+++|++|++++|.++.. .+.
T Consensus 37 ~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~-----i~~~~~~~l~~L~~L~l~~n~l~~~----~~~ 103 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPS----KAFHRLTKLRLLYLNDNKLQT-----LPAGIFKELKNLETLWVTDNKLQAL----PIG 103 (270)
T ss_dssp TTCSEEECCSSCCSCCCT----TSSSSCTTCCEEECCSSCCSC-----CCTTTTSSCTTCCEEECCSSCCCCC----CTT
T ss_pred CCCCEEECcCCCCCeeCH----HHhcCCCCCCEEECCCCccCe-----eChhhhcCCCCCCEEECCCCcCCcC----CHh
Confidence 345555555555554432 234556666666666666554 2222223445666666666666653 223
Q ss_pred HHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHH
Q 006842 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 461 (629)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 461 (629)
.+..+++|++|++++|.++.. .+..+..+++|++|++++|.++... ...+..+++|++|++++|.++.....
T Consensus 104 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQLKSL----PPRVFDSLTKLTYLSLGYNELQSLP----KGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp TTTTCSSCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred HcccccCCCEEECCCCccCee----CHHHhCcCcCCCEEECCCCcCCccC----HhHccCCcccceeEecCCcCcEeChh
Confidence 345666677777777666653 2233455667777777777766531 22345567777777777776654332
Q ss_pred HHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 462 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 462 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
. +..+++|++|+|++|.++......+ ..+++|+.|+|++|.+...
T Consensus 176 ~----~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 176 A----FDKLTELKTLKLDNNQLKRVPEGAF----DSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp T----TTTCTTCCEEECCSSCCSCCCTTTT----TTCTTCCEEECCSSCBCCS
T ss_pred H----hccCCCcCEEECCCCcCCcCCHHHh----ccccCCCEEEecCCCeeCC
Confidence 2 2344667777777777665443333 3347778888888776544
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=1.6e-17 Score=179.37 Aligned_cols=196 Identities=15% Similarity=0.185 Sum_probs=137.6
Q ss_pred CCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHH
Q 006842 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409 (629)
Q Consensus 330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 409 (629)
.++++|++++|.++. ++..+ .++|++|+|++|.|+. ++ ..+++|++|++++|.|+. ++.
T Consensus 59 ~~L~~L~Ls~n~L~~-----lp~~l---~~~L~~L~Ls~N~l~~-----ip---~~l~~L~~L~Ls~N~l~~-----ip~ 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-----LPDNL---PPQITVLEITQNALIS-----LP---ELPASLEYLDACDNRLST-----LPE 117 (571)
T ss_dssp TTCSEEECCSSCCSC-----CCSCC---CTTCSEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-----CCC
T ss_pred CCccEEEeCCCCCCc-----cCHhH---cCCCCEEECcCCCCcc-----cc---cccCCCCEEEccCCCCCC-----cch
Confidence 489999999999876 33322 2579999999999986 44 457899999999999887 333
Q ss_pred HHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHH
Q 006842 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE 489 (629)
Q Consensus 410 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 489 (629)
+.. +|++|++++|.|+.. +. .+++|++|++++|.|+..+. .+++|++|+|++|.|+..+.
T Consensus 118 -l~~--~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~L~~lp~- 177 (571)
T 3cvr_A 118 -LPA--SLKHLDVDNNQLTML-----PE---LPALLEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLTFLPE- 177 (571)
T ss_dssp -CCT--TCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCCCC-
T ss_pred -hhc--CCCEEECCCCcCCCC-----CC---cCccccEEeCCCCccCcCCC--------cCCCcCEEECCCCCCCCcch-
Confidence 332 899999999998873 22 46889999999999875432 35789999999999877433
Q ss_pred HHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCC
Q 006842 490 FVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAF 569 (629)
Q Consensus 490 ~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~ 569 (629)
+ . ++|++|+|++|+|+.. |. +.. .-+...+.|+.|+|++|+|+.+ +..+.. .++|+.|+|++
T Consensus 178 -l----~--~~L~~L~Ls~N~L~~l-p~-~~~-----~L~~~~~~L~~L~Ls~N~l~~l---p~~l~~-l~~L~~L~L~~ 239 (571)
T 3cvr_A 178 -L----P--ESLEALDVSTNLLESL-PA-VPV-----RNHHSEETEIFFRCRENRITHI---PENILS-LDPTCTIILED 239 (571)
T ss_dssp -C----C--TTCCEEECCSSCCSSC-CC-CC-------------CCEEEECCSSCCCCC---CGGGGG-SCTTEEEECCS
T ss_pred -h----h--CCCCEEECcCCCCCch-hh-HHH-----hhhcccccceEEecCCCcceec---CHHHhc-CCCCCEEEeeC
Confidence 2 1 7899999999988844 22 110 0011122237788888877753 444444 37788888888
Q ss_pred CCCCchhHHHHHHHH
Q 006842 570 NEIRDDGAFAIAQAL 584 (629)
Q Consensus 570 N~i~~~~~~~l~~~l 584 (629)
|.|++..|..+..+.
T Consensus 240 N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 240 NPLSSRIRESLSQQT 254 (571)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CcCCCcCHHHHHHhh
Confidence 888877777776653
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=5e-18 Score=165.49 Aligned_cols=157 Identities=18% Similarity=0.252 Sum_probs=89.3
Q ss_pred CCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHH
Q 006842 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409 (629)
Q Consensus 330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 409 (629)
...++++++++.++. ++..+. +.++.|++++|.++.. .+..+..+++|++|++++|.++.. .+.
T Consensus 14 ~~~~~l~~~~~~l~~-----~p~~~~---~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~ 77 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-----VPSGIP---ADTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTL----SAG 77 (251)
T ss_dssp GGGTEEECTTCCCSS-----CCSCCC---TTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTT
T ss_pred CCCeEEecCCCCccc-----cCCCCC---CCCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCcc----CHh
Confidence 356777887777765 333222 3677778877777765 334566777777777777777664 333
Q ss_pred HHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHH
Q 006842 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE 489 (629)
Q Consensus 410 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 489 (629)
.+..+++|++|++++|.++.. ....+..+++|++|+|++|.|+...... +..+++|++|+|++|.|+.....
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASL----PLGVFDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTT
T ss_pred HhccCCcCCEEECCCCccccc----ChhHhcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCHH
Confidence 455667777777777776653 2233445566666676666665332211 12334555555555555443332
Q ss_pred HHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 490 FVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 490 ~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
.+. .+++|++|+|++|++.+.
T Consensus 150 ~~~----~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 150 AFD----KLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTT----TCTTCCEEECCSSCCSCC
T ss_pred HcC----cCcCCCEEECCCCcCCcc
Confidence 222 225555555555555544
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=2.9e-18 Score=165.89 Aligned_cols=86 Identities=13% Similarity=0.078 Sum_probs=43.3
Q ss_pred CccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCC-CCchhHHHHHHHHHcCCCccEEEccC-CCCChHHHHHHH
Q 006842 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNCKSLLWINLYM-NDIGDEGAEKIA 408 (629)
Q Consensus 331 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~ 408 (629)
+|++|++++|.++... ......+++|++|++++|. ++.. .+..+..+++|++|++++ |.++.. .+
T Consensus 32 ~l~~L~l~~n~l~~i~-----~~~~~~l~~L~~L~l~~n~~l~~i----~~~~f~~l~~L~~L~l~~~n~l~~i----~~ 98 (239)
T 2xwt_C 32 STQTLKLIETHLRTIP-----SHAFSNLPNISRIYVSIDVTLQQL----ESHSFYNLSKVTHIEIRNTRNLTYI----DP 98 (239)
T ss_dssp TCCEEEEESCCCSEEC-----TTTTTTCTTCCEEEEECCSSCCEE----CTTTEESCTTCCEEEEEEETTCCEE----CT
T ss_pred cccEEEEeCCcceEEC-----HHHccCCCCCcEEeCCCCCCccee----CHhHcCCCcCCcEEECCCCCCeeEc----CH
Confidence 5666666666665421 1111344456666666664 5543 122345555666666655 555542 12
Q ss_pred HHHhcCCCccEEEeeCCCCCH
Q 006842 409 DALKQNRTITTIDLGGNNIHS 429 (629)
Q Consensus 409 ~~l~~~~~L~~L~Ls~n~i~~ 429 (629)
..|..+++|++|++++|.++.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM 119 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS
T ss_pred HHhCCCCCCCEEeCCCCCCcc
Confidence 234445555555555555554
No 98
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.63 E-value=4.2e-15 Score=135.55 Aligned_cols=148 Identities=14% Similarity=0.193 Sum_probs=123.2
Q ss_pred HHHHHHHHHhcCCccEEEccCC-CCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCC
Q 006842 151 KQTLNEFAKELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP 229 (629)
Q Consensus 151 ~~~l~~~~~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 229 (629)
.+.+..++...+.|++|+|+++ .|++.++..+++++...+.|++|+|++|.|++.+...++.++..+++|++|+|++|.
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3466777778888999999985 899999999999999888999999999999999999999999889999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCEEEeecc---CCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhh
Q 006842 230 IGDEGVKCLCDILVDNAGVERLQLSSV---DLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE 300 (629)
Q Consensus 230 i~~~~~~~l~~~l~~~~~L~~L~L~~n---~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 300 (629)
|++.|...+++.+.....|++|+|++| .+++.+...+++.+...+.|+.|+++.|.+... ..+.+.+..
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~~--~~ia~aL~~ 181 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEAR--HRVSEALER 181 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHH--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccHH--HHHHHHHHh
Confidence 999999999999888888999999764 678888888888888888899998887765432 234555443
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=9e-18 Score=163.65 Aligned_cols=181 Identities=17% Similarity=0.176 Sum_probs=117.8
Q ss_pred CCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHH
Q 006842 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (629)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 381 (629)
...++++++++.++.++. .+ .+.+++|++++|.++......+ ..+++|++|++++|.++.. .+.
T Consensus 14 ~~~~~l~~~~~~l~~~p~-----~~--~~~l~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~ 77 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-----GI--PADTEKLDLQSTGLATLSDATF-----RGLTKLTWLNLDYNQLQTL----SAG 77 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-----CC--CTTCCEEECTTSCCCCCCTTTT-----TTCTTCCEEECTTSCCCCC----CTT
T ss_pred CCCeEEecCCCCccccCC-----CC--CCCCCEEEccCCCcCccCHhHh-----cCcccCCEEECCCCcCCcc----CHh
Confidence 456777787777766553 11 2567788888887766322222 3556788888888877775 344
Q ss_pred HHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHH
Q 006842 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 461 (629)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 461 (629)
.+..+++|++|++++|.++.. .+..+..+++|++|++++|.|+.. ....+..+++|++|+|++|.|+.....
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASL----PLGVFDHLTQLDKLYLGGNQLKSL----PSGVFDRLTKLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred HhccCCcCCEEECCCCccccc----ChhHhcccCCCCEEEcCCCcCCCc----ChhHhccCCcccEEECcCCcCCccCHH
Confidence 566777888888888877754 234456677788888888877753 223345567788888888877654332
Q ss_pred HHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 462 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 462 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
. +..+++|++|+|++|.++......+ ..+++|++|+|++|.+...
T Consensus 150 ~----~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 150 A----FDKLTNLQTLSLSTNQLQSVPHGAF----DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp T----TTTCTTCCEEECCSSCCSCCCTTTT----TTCTTCCEEECCSCCBCTT
T ss_pred H----cCcCcCCCEEECCCCcCCccCHHHH----hCCCCCCEEEeeCCceeCC
Confidence 2 3445778888888887765544333 3347788888888777644
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=3.4e-18 Score=165.41 Aligned_cols=132 Identities=12% Similarity=0.142 Sum_probs=73.0
Q ss_pred CCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCC-CChhHHHHHHHhhccCCCCceEEEccC-CCCCchhHHHH
Q 006842 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGN-NSISAKGAFHV 379 (629)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l 379 (629)
.+|++|++++|.++.++. ..+..+++|++|++++|. ++.. ....+..+++|++|++++ |.++.. .
T Consensus 31 ~~l~~L~l~~n~l~~i~~----~~~~~l~~L~~L~l~~n~~l~~i-----~~~~f~~l~~L~~L~l~~~n~l~~i----~ 97 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS----HAFSNLPNISRIYVSIDVTLQQL-----ESHSFYNLSKVTHIEIRNTRNLTYI----D 97 (239)
T ss_dssp TTCCEEEEESCCCSEECT----TTTTTCTTCCEEEEECCSSCCEE-----CTTTEESCTTCCEEEEEEETTCCEE----C
T ss_pred CcccEEEEeCCcceEECH----HHccCCCCCcEEeCCCCCCccee-----CHhHcCCCcCCcEEECCCCCCeeEc----C
Confidence 366667777666665543 234556667777777665 5542 222223455667777766 666653 2
Q ss_pred HHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCcc---EEEeeCC-CCCHHHHHHHHHHhhcCCccc-EEECcCCC
Q 006842 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTIT---TIDLGGN-NIHSKGASAIARVLKDNSVIT-SLDLAYNP 454 (629)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~---~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~-~L~Ls~n~ 454 (629)
+..|..+++|++|++++|.++. ++. +..+++|+ +|++++| .++... ...+..+++|+ +|++++|.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~----~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTSIP----VNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCEEC----TTTTTTTBSSEEEEECCSCC
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhhcC----cccccchhcceeEEEcCCCC
Confidence 2345566667777776666655 222 44455555 6666666 555431 12234445555 55555555
Q ss_pred CC
Q 006842 455 IG 456 (629)
Q Consensus 455 i~ 456 (629)
++
T Consensus 168 l~ 169 (239)
T 2xwt_C 168 FT 169 (239)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=7.2e-16 Score=153.46 Aligned_cols=171 Identities=21% Similarity=0.216 Sum_probs=95.7
Q ss_pred cCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHH
Q 006842 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 380 (629)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 380 (629)
+++|+.|++++|.++..+ .+..+++|++|++++|.+++... ...+++|++|++++|.++..
T Consensus 45 l~~L~~L~l~~~~i~~~~------~~~~l~~L~~L~L~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~~------ 105 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP-------LANLKNLGWLFLDENKVKDL------ 105 (291)
T ss_dssp HHTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCG------
T ss_pred cCcccEEEccCCCcccCh------hHhcCCCCCEEEccCCccCCCcc-------cccCCCCCEEECCCCcCCCC------
Confidence 345556666665555442 24455666666666666655221 13444566666666666552
Q ss_pred HHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHH
Q 006842 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460 (629)
Q Consensus 381 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 460 (629)
..+..+++|++|++++|.+++. ..+..+++|++|++++|+++.. ..+..+++|++|++++|.+++...
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred hhhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccchh
Confidence 1255566666666666666552 2345566666666666666552 234555666666666666655432
Q ss_pred HHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 461 KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 461 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
+..+++|++|++++|.|++.. .+..+++|+.|++++|.+.+.
T Consensus 174 ------l~~l~~L~~L~L~~N~i~~l~------~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 174 ------LAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ------GTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEEEEEEEEECC
T ss_pred ------hcCCCccCEEECCCCcCCCCh------hhccCCCCCEEECcCCcccCC
Confidence 344566666666666665532 134446677777777666543
No 102
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.62 E-value=7.5e-15 Score=133.89 Aligned_cols=134 Identities=11% Similarity=0.128 Sum_probs=104.1
Q ss_pred HHHHHHcCCCccEEEccCC-CCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCCh
Q 006842 379 VAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (629)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (629)
+...+...+.|++|+|++| .|++.|+..+++++..++.|+.|+|++|.|++.++.+++.++..++.|++|+|++|.|++
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 5555566677888888775 788888888888888777888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHhcCCCccEEeccCC---CCCHHHHHHHHHHHhcCCCcCEEEcccCCCC
Q 006842 458 DGAKALSEVLKFHGNINTLKLGWC---QIGASGAEFVADMLRYNNTISILDLRANGLR 512 (629)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~n---~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 512 (629)
.|...+++.++.+..|++|+|++| .+++.+...++.+++.+++|+.|+++.|.+.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 888888888877777888888654 5677777788888888888888888766543
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=2.5e-16 Score=156.82 Aligned_cols=187 Identities=21% Similarity=0.182 Sum_probs=138.0
Q ss_pred EEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHc
Q 006842 306 SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385 (629)
Q Consensus 306 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 385 (629)
.+.+..+.+++... +..+++|++|++++|.+++.. .+ ..+++|++|++++|.+++. +. +..
T Consensus 28 ~~~l~~~~~~~~~~------~~~l~~L~~L~l~~~~i~~~~------~~-~~l~~L~~L~L~~n~l~~~-----~~-l~~ 88 (291)
T 1h6t_A 28 KDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKSVQ------GI-QYLPNVTKLFLNGNKLTDI-----KP-LAN 88 (291)
T ss_dssp HHHTTCSCTTSEEC------HHHHHTCCEEECTTSCCCCCT------TG-GGCTTCCEEECCSSCCCCC-----GG-GTT
T ss_pred HHHhcCCCcccccc------hhhcCcccEEEccCCCcccCh------hH-hcCCCCCEEEccCCccCCC-----cc-ccc
Confidence 34455555544321 124578899999999887631 12 3566899999999998884 22 788
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHH
Q 006842 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (629)
Q Consensus 386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (629)
+++|++|++++|.+++. + .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++. .
T Consensus 89 l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~ 150 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKDL-----S-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------T 150 (291)
T ss_dssp CTTCCEEECCSSCCCCG-----G-GGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------G
T ss_pred CCCCCEEECCCCcCCCC-----h-hhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------h
Confidence 89999999999988873 2 377788999999999988873 3466778899999999988764 2
Q ss_pred HHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcc
Q 006842 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYL 545 (629)
Q Consensus 466 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l 545 (629)
.+..+++|++|++++|.++...+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~L~~N~i~~l------------~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDL------------RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBC------------GGGTTCTTCSEEEEEEEEE
T ss_pred hhccCCCCCEEEccCCccccchh------hcCCCccCEEECCCCcCCCC------------hhhccCCCCCEEECcCCcc
Confidence 35667888888888888877643 45568888888888888765 2367778888888888877
Q ss_pred hh
Q 006842 546 QG 547 (629)
Q Consensus 546 ~~ 547 (629)
+.
T Consensus 213 ~~ 214 (291)
T 1h6t_A 213 LN 214 (291)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=1.6e-16 Score=171.60 Aligned_cols=187 Identities=18% Similarity=0.150 Sum_probs=144.2
Q ss_pred cCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHH
Q 006842 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 380 (629)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 380 (629)
+.+|+.|++++|.++.++. .+ .++|++|+|++|.|+. ++ ..+++|++|++++|.|+. ++
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~-----~l--~~~L~~L~Ls~N~l~~-----ip----~~l~~L~~L~Ls~N~l~~-----ip 116 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPD-----NL--PPQITVLEITQNALIS-----LP----ELPASLEYLDACDNRLST-----LP 116 (571)
T ss_dssp HTTCSEEECCSSCCSCCCS-----CC--CTTCSEEECCSSCCSC-----CC----CCCTTCCEEECCSSCCSC-----CC
T ss_pred cCCccEEEeCCCCCCccCH-----hH--cCCCCEEECcCCCCcc-----cc----cccCCCCEEEccCCCCCC-----cc
Confidence 3589999999999987553 12 3789999999999985 22 245689999999999998 34
Q ss_pred HHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHH
Q 006842 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460 (629)
Q Consensus 381 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 460 (629)
. +.. +|++|++++|.++. ++. .+++|++|++++|.|+.. +. .+++|++|+|++|.|+..+.
T Consensus 117 ~-l~~--~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N~L~~lp~ 177 (571)
T 3cvr_A 117 E-LPA--SLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTML-----PE---LPTSLEVLSVRNNQLTFLPE 177 (571)
T ss_dssp C-CCT--TCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSCCCC
T ss_pred h-hhc--CCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCcC-----CC---cCCCcCEEECCCCCCCCcch
Confidence 3 333 99999999999987 333 578999999999999873 22 45899999999999986433
Q ss_pred HHHHHHHhcCCCccEEeccCCCCCHHHHHHHHH-HHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhh
Q 006842 461 KALSEVLKFHGNINTLKLGWCQIGASGAEFVAD-MLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYS 539 (629)
Q Consensus 461 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 539 (629)
+ . ++|++|+|++|.|+..+. +.. +....+.|+.|+|++|+|+.. |..+..+++|+.|+
T Consensus 178 --l----~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~l-----------p~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 178 --L----P--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITHI-----------PENILSLDPTCTII 236 (571)
T ss_dssp --C----C--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCCC-----------CGGGGGSCTTEEEE
T ss_pred --h----h--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcceec-----------CHHHhcCCCCCEEE
Confidence 2 2 789999999999985443 221 111223449999999999865 66777899999999
Q ss_pred hhhhcchhh
Q 006842 540 LCINYLQGA 548 (629)
Q Consensus 540 Ls~N~l~~~ 548 (629)
|++|.+++.
T Consensus 237 L~~N~l~~~ 245 (571)
T 3cvr_A 237 LEDNPLSSR 245 (571)
T ss_dssp CCSSSCCHH
T ss_pred eeCCcCCCc
Confidence 999999885
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=4.6e-16 Score=145.46 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=32.3
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCC-CChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHH
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND-IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 438 (629)
+|++|++++|.+++. .+..+..+++|++|++++|. +++. + .+..+++|++|++++|.+++. . .
T Consensus 113 ~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~~-----~-~l~~l~~L~~L~l~~n~i~~~-----~-~ 176 (197)
T 4ezg_A 113 SLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITDI-----M-PLKTLPELKSLNIQFDGVHDY-----R-G 176 (197)
T ss_dssp TCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCCC-----G-GGGGCSSCCEEECTTBCCCCC-----T-T
T ss_pred CCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCcccc-----H-hhcCCCCCCEEECCCCCCcCh-----H-H
Confidence 444444444444432 22333444444444444443 3331 1 233444444444444444431 1 2
Q ss_pred hhcCCcccEEECcCCCC
Q 006842 439 LKDNSVITSLDLAYNPI 455 (629)
Q Consensus 439 l~~~~~L~~L~Ls~n~i 455 (629)
+..+++|++|++++|+|
T Consensus 177 l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GGGCSSCCEEEECBC--
T ss_pred hccCCCCCEEEeeCccc
Confidence 33334444444444444
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.4e-15 Score=142.08 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=79.9
Q ss_pred CCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHH
Q 006842 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (629)
Q Consensus 246 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (629)
++|++|++++|.+++. + .+..+++|++|++++|.+++. ..+..+++|++|++++|.++.... ..
T Consensus 44 ~~L~~L~l~~n~i~~l-----~-~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~~----~~ 107 (197)
T 4ezg_A 44 NSLTYITLANINVTDL-----T-GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKI----PN 107 (197)
T ss_dssp HTCCEEEEESSCCSCC-----T-TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGGS----CC
T ss_pred CCccEEeccCCCccCh-----H-HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCcccC----hh
Confidence 3444455544444431 1 133344555555555544321 123345555555555555544222 23
Q ss_pred hcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCC-CCchhHHHHHHHHHcCCCccEEEccCCCCChHHH
Q 006842 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (629)
Q Consensus 326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (629)
+..+++|++|++++|.+++..+..+ ..+++|++|++++|. +++. + .+..+++|++|++++|.+++.
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l-----~~l~~L~~L~L~~n~~i~~~-----~-~l~~l~~L~~L~l~~n~i~~~-- 174 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKI-----NTLPKVNSIDLSYNGAITDI-----M-PLKTLPELKSLNIQFDGVHDY-- 174 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHH-----TTCSSCCEEECCSCTBCCCC-----G-GGGGCSSCCEEECTTBCCCCC--
T ss_pred hcCCCCCCEEEecCCccCcHhHHHH-----hhCCCCCEEEccCCCCcccc-----H-hhcCCCCCCEEECCCCCCcCh--
Confidence 4456666666666666665444444 345566677776665 5553 2 456677777777777777662
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCH
Q 006842 405 EKIADALKQNRTITTIDLGGNNIHS 429 (629)
Q Consensus 405 ~~l~~~l~~~~~L~~L~Ls~n~i~~ 429 (629)
. .+..+++|++|++++|+|+.
T Consensus 175 ---~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 ---R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ---T-TGGGCSSCCEEEECBC----
T ss_pred ---H-HhccCCCCCEEEeeCcccCC
Confidence 2 45566777777777776653
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=5.5e-16 Score=169.26 Aligned_cols=190 Identities=21% Similarity=0.197 Sum_probs=143.5
Q ss_pred ccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhc
Q 006842 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLS 355 (629)
Q Consensus 276 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 355 (629)
+..+++..+.+.+.. .+..++.|+.|++++|.+..++ .+..+++|++|+|++|.+++... +
T Consensus 23 l~~l~l~~~~i~~~~------~~~~L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~------l- 83 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV------TQNELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP------L- 83 (605)
T ss_dssp HHHHHTTCSCTTSEE------CHHHHTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG------G-
T ss_pred HHHHhccCCCccccc------chhcCCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh------h-
Confidence 344556666665421 1235688999999999887764 36788999999999998877432 2
Q ss_pred cCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHH
Q 006842 356 SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI 435 (629)
Q Consensus 356 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 435 (629)
..+++|+.|+|++|.++.. ..+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.|+..
T Consensus 84 ~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l----- 146 (605)
T 1m9s_A 84 TNLKNLGWLFLDENKIKDL------SSLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI----- 146 (605)
T ss_dssp GGCTTCCEEECCSSCCCCC------TTSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC-----
T ss_pred ccCCCCCEEECcCCCCCCC------hhhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc-----
Confidence 4667899999999998874 2577888999999999988873 3477788999999999988873
Q ss_pred HHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 436 ARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 436 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
..+..+++|+.|+|++|.|.+... +..+++|+.|+|++|.|++.. .+..+++|+.|+|++|.+.+.
T Consensus 147 -~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 147 -TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GGGGSCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEECCSEEEECC
T ss_pred -hhhcccCCCCEEECcCCcCCCchh------hccCCCCCEEECcCCCCCCCh------HHccCCCCCEEEccCCcCcCC
Confidence 456778889999999998876543 466788889999888887642 245568888888888888765
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=5.6e-15 Score=161.25 Aligned_cols=172 Identities=24% Similarity=0.185 Sum_probs=143.8
Q ss_pred cCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHH
Q 006842 272 NNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM 351 (629)
Q Consensus 272 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 351 (629)
.+++|+.|++++|.|... ..+..+++|+.|+|++|.++.... +..+++|++|+|++|.+++..
T Consensus 41 ~L~~L~~L~l~~n~i~~l------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~----- 103 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKDLS----- 103 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC------TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCT-----
T ss_pred cCCCCCEEECcCCCCCCC------hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCCCh-----
Confidence 347899999999999753 246789999999999999988753 778999999999999998731
Q ss_pred HhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHH
Q 006842 352 SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKG 431 (629)
Q Consensus 352 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 431 (629)
.+ ..+++|+.|+|++|.++.. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.|++..
T Consensus 104 -~l-~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 104 -SL-KDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp -TS-TTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCG
T ss_pred -hh-ccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCch
Confidence 22 4677899999999999984 3478999999999999999884 46788999999999999998752
Q ss_pred HHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHH
Q 006842 432 ASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (629)
Q Consensus 432 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (629)
. +..+++|++|+|++|.|++.. .+..+++|+.|+|++|.+...
T Consensus 170 -----~-l~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 -----P-LAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -----G-GTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEECCSEEEECC
T ss_pred -----h-hccCCCCCEEECcCCCCCCCh------HHccCCCCCEEEccCCcCcCC
Confidence 2 778899999999999998752 356789999999999998654
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=4.4e-16 Score=152.54 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=105.5
Q ss_pred CCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHH
Q 006842 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409 (629)
Q Consensus 330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 409 (629)
.++..++++++.+++.. .+ ..+++|++|++++|.++.. + .+..+++|++|++++|.+++. +.
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~-----~~l~~L~~L~l~~n~i~~l-----~-~l~~l~~L~~L~L~~N~i~~~-----~~ 80 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQ-----KELSGVQNFNGDNSNIQSL-----A-GMQFFTNLKELHLSHNQISDL-----SP 80 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CH-----HHHTTCSEEECTTSCCCCC-----T-TGGGCTTCCEEECCSSCCCCC-----GG
T ss_pred HHHHHHHhcCCCccccc--ch-----hhcCcCcEEECcCCCcccc-----h-HHhhCCCCCEEECCCCccCCC-----hh
Confidence 34556677777776532 11 1223677777777777763 2 466777777777777777763 22
Q ss_pred HHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHH
Q 006842 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE 489 (629)
Q Consensus 410 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 489 (629)
+..+++|++|++++|+++.. +. +.. ++|++|++++|.+++.. .+..+++|++|++++|+|++..
T Consensus 81 -l~~l~~L~~L~L~~N~l~~l-----~~-~~~-~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~Ls~N~i~~~~-- 144 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNRLKNL-----NG-IPS-ACLSRLFLDNNELRDTD------SLIHLKNLEILSIRNNKLKSIV-- 144 (263)
T ss_dssp -GTTCSSCCEEECCSSCCSCC-----TT-CCC-SSCCEEECCSSCCSBSG------GGTTCTTCCEEECTTSCCCBCG--
T ss_pred -hccCCCCCEEECCCCccCCc-----Cc-ccc-CcccEEEccCCccCCCh------hhcCcccccEEECCCCcCCCCh--
Confidence 66677777777777777652 11 222 67777777777776531 2455667777777777776542
Q ss_pred HHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchh
Q 006842 490 FVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQG 547 (629)
Q Consensus 490 ~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 547 (629)
.+..+++|++|++++|++.+. ..+..+++|+.|++++|.+++
T Consensus 145 ----~l~~l~~L~~L~L~~N~i~~~------------~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 145 ----MLGFLSKLEVLDLHGNEITNT------------GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ----GGGGCTTCCEEECTTSCCCBC------------TTSTTCCCCCEEEEEEEEEEC
T ss_pred ----HHccCCCCCEEECCCCcCcch------------HHhccCCCCCEEeCCCCcccC
Confidence 234457777777777777654 345556666666666666654
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=1.5e-15 Score=143.37 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=77.2
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHh
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (629)
+|++|++++|.++.. .+..+..+++|++|++++|.++.. ....+..+++|++|++++|.++.. ....+
T Consensus 29 ~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~ 96 (208)
T 2o6s_A 29 QTTYLDLETNSLKSL----PNGVFDELTSLTQLYLGGNKLQSL----PNGVFNKLTSLTYLNLSTNQLQSL----PNGVF 96 (208)
T ss_dssp TCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTT
T ss_pred CCcEEEcCCCccCcC----ChhhhcccccCcEEECCCCccCcc----ChhhcCCCCCcCEEECCCCcCCcc----CHhHh
Confidence 344555555544432 122234455555555555555432 112234455555555555555532 11223
Q ss_pred hcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccC
Q 006842 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGC 519 (629)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~ 519 (629)
..+++|++|++++|.++..... .+..+++|++|++++|.++......+ ..+++|++|++++|.+.+.
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~----~~l~~L~~L~l~~N~~~~~----- 163 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQNQLKSVPDGVF----DRLTSLQYIWLHDNPWDCT----- 163 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTT----TTCTTCCEEECCSCCBCCC-----
T ss_pred cCccCCCEEEcCCCcCcccCHh----HhccCCcCCEEECCCCccceeCHHHh----ccCCCccEEEecCCCeecC-----
Confidence 4445566666666655533221 12334566666666666554333222 2336777777777766544
Q ss_pred CCchhhhHHHHhhhhhhhhhhhhhcchhh
Q 006842 520 NGLSFFHSAIYSLKHMLFYSLCINYLQGA 548 (629)
Q Consensus 520 ~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 548 (629)
+++|++|++..|+++|.
T Consensus 164 ------------~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 164 ------------CPGIRYLSEWINKHSGV 180 (208)
T ss_dssp ------------TTTTHHHHHHHHHCTTT
T ss_pred ------------CCCHHHHHHHHHhCCce
Confidence 44677777777777664
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=1.5e-15 Score=156.17 Aligned_cols=179 Identities=15% Similarity=0.062 Sum_probs=99.9
Q ss_pred cEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhcc-CCCCceEEEccCCCCCchhHHHHHHHH
Q 006842 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSS-RKGKLAVLDIGNNSISAKGAFHVAEYI 383 (629)
Q Consensus 305 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l 383 (629)
+.++++++.++.++. . -.+.+++|+|++|.|+.. ...... .+++|+.|+|++|+|+.. .+..|
T Consensus 21 ~~l~c~~~~l~~iP~-----~--~~~~l~~L~Ls~N~l~~l-----~~~~~~~~l~~L~~L~L~~N~i~~i----~~~~~ 84 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-----S--LPSYTALLDLSHNNLSRL-----RAEWTPTRLTNLHSLLLSHNHLNFI----SSEAF 84 (361)
T ss_dssp TEEECCSSCCSSCCS-----S--CCTTCSEEECCSSCCCEE-----CTTSSSSCCTTCCEEECCSSCCCEE----CTTTT
T ss_pred CEEEeCCCCcCccCc-----c--CCCCCCEEECCCCCCCcc-----ChhhhhhcccccCEEECCCCcCCcc----Chhhc
Confidence 567777777666542 1 123567777777777663 222222 455677777777777764 33445
Q ss_pred HcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHH
Q 006842 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (629)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (629)
..+++|++|+|++|.++.. ....|..+++|++|+|++|+|+.. .+..+..+++|++|+|++|.|+......+
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTL----DEFLFSDLQALEVLLLYNNHIVVV----DRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp TTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred cCCCCCCEEECCCCcCCcC----CHHHhCCCcCCCEEECCCCcccEE----CHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 6677777777777776653 223455566777777777776653 22344555667777777776654332222
Q ss_pred HHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCC--cCEEEcccCCCC
Q 006842 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT--ISILDLRANGLR 512 (629)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~--L~~L~Ls~N~l~ 512 (629)
.. +..+++|+.|+|++|.|+......+..+ +. ++.|+|++|.+.
T Consensus 157 ~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l----~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 157 KD-GNKLPKLMLLDLSSNKLKKLPLTDLQKL----PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp C-----CTTCCEEECCSSCCCCCCHHHHHHS----CHHHHTTEECCSSCEE
T ss_pred cC-cccCCcCCEEECCCCCCCccCHHHhhhc----cHhhcceEEecCCCcc
Confidence 10 1223556666666666555444444333 43 255556655554
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=6.1e-15 Score=144.37 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=17.6
Q ss_pred HHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCH
Q 006842 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (629)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 429 (629)
+..+++|++|++++|++++. ..+..+++|++|++++|+|++
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~------~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSI------VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBC------GGGGGCTTCCEEECTTSCCCB
T ss_pred hcCcccccEEECCCCcCCCC------hHHccCCCCCEEECCCCcCcc
Confidence 34444444444444444432 123334444444444444443
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=6.7e-16 Score=158.85 Aligned_cols=131 Identities=14% Similarity=0.090 Sum_probs=75.7
Q ss_pred ceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHh-cCCCccEEEeeCCCCCHHHHHHHHHHh
Q 006842 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK-QNRTITTIDLGGNNIHSKGASAIARVL 439 (629)
Q Consensus 361 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (629)
-+.++++++.++. ++..+ .+.+++|+|++|.|+.. ....+. .+++|++|+|++|+|+... ...+
T Consensus 20 ~~~l~c~~~~l~~-----iP~~~--~~~l~~L~Ls~N~l~~l----~~~~~~~~l~~L~~L~L~~N~i~~i~----~~~~ 84 (361)
T 2xot_A 20 SNILSCSKQQLPN-----VPQSL--PSYTALLDLSHNNLSRL----RAEWTPTRLTNLHSLLLSHNHLNFIS----SEAF 84 (361)
T ss_dssp TTEEECCSSCCSS-----CCSSC--CTTCSEEECCSSCCCEE----CTTSSSSCCTTCCEEECCSSCCCEEC----TTTT
T ss_pred CCEEEeCCCCcCc-----cCccC--CCCCCEEECCCCCCCcc----ChhhhhhcccccCEEECCCCcCCccC----hhhc
Confidence 4577888887776 33222 24577888888877764 223343 5677777777777776642 2345
Q ss_pred hcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
..+++|++|+|++|+|+...... +..+++|++|+|++|.|+...+..|.. +++|++|+|++|+|++.
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~~----l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVDRNAFED----MAQLQKLYLSQNQISRF 151 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTT----CTTCCEEECCSSCCCSC
T ss_pred cCCCCCCEEECCCCcCCcCCHHH----hCCCcCCCEEECCCCcccEECHHHhCC----cccCCEEECCCCcCCee
Confidence 55677777777777766432222 233455666666666655443333322 25566666666655544
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=2.8e-15 Score=141.39 Aligned_cols=160 Identities=17% Similarity=0.141 Sum_probs=95.4
Q ss_pred CCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHH
Q 006842 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409 (629)
Q Consensus 330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 409 (629)
++|++|++++|.++.. .......+++|++|++++|.++.. .+..+..+++|++|++++|.++.. ...
T Consensus 28 ~~l~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSL-----PNGVFDELTSLTQLYLGGNKLQSL----PNGVFNKLTSLTYLNLSTNQLQSL----PNG 94 (208)
T ss_dssp TTCSEEECCSSCCCCC-----CTTTTTTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTT
T ss_pred CCCcEEEcCCCccCcC-----ChhhhcccccCcEEECCCCccCcc----ChhhcCCCCCcCEEECCCCcCCcc----CHh
Confidence 3555556655555442 111113444566666666665543 223345566666666666666543 222
Q ss_pred HHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHH
Q 006842 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE 489 (629)
Q Consensus 410 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 489 (629)
.+..+++|++|++++|+|+.. ....+..+++|++|++++|.++..... .+..+++|++|++++|.+..
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSL----PDGVFDKLTQLKDLRLYQNQLKSVPDG----VFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSCCBCC----
T ss_pred HhcCccCCCEEEcCCCcCccc----CHhHhccCCcCCEEECCCCccceeCHH----HhccCCCccEEEecCCCeec----
Confidence 345566777777777766653 122345567777777777777644322 23445778888888887643
Q ss_pred HHHHHHhcCCCcCEEEcccCCCCccccccCCC
Q 006842 490 FVADMLRYNNTISILDLRANGLRDEVCSGCNG 521 (629)
Q Consensus 490 ~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~ 521 (629)
.+++|+.|+++.|++++.+|..+..
T Consensus 163 -------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 163 -------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp -------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred -------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 2478899999999999886655443
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=3.3e-16 Score=169.99 Aligned_cols=190 Identities=17% Similarity=0.160 Sum_probs=89.6
Q ss_pred CCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCC-Chh--------hHHHHHHHhcCCCCccEEE-ccCCCC
Q 006842 273 NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYG-GAL--------GANALAKGLEGNKSLRELH-LHGNSI 342 (629)
Q Consensus 273 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~--------~~~~l~~~l~~~~~L~~L~-Ls~n~l 342 (629)
+++|+.|+|++|.+ ..++..+..+++|+.|++++|.. ... .....+..+..+++|+.|+ ++.|.+
T Consensus 348 ~~~L~~L~Ls~n~L-----~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 348 DEQLFRCELSVEKS-----TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp TTTSSSCCCCHHHH-----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred CccceeccCChhhH-----HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 45677777777766 56677777777777777755421 000 0011123334445555555 444332
Q ss_pred ChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEe
Q 006842 343 GDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDL 422 (629)
Q Consensus 343 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 422 (629)
.+ |..+.+++|.++. ++ ...|+.|++++|.++. ++. +..+++|+.|+|
T Consensus 423 ~~----------------L~~l~l~~n~i~~-----l~-----~~~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~L 470 (567)
T 1dce_A 423 DD----------------LRSKFLLENSVLK-----ME-----YADVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDL 470 (567)
T ss_dssp HH----------------HHHHHHHHHHHHH-----HH-----HTTCSEEECTTSCCSS-----CCC-GGGGTTCCEEEC
T ss_pred ch----------------hhhhhhhcccccc-----cC-----ccCceEEEecCCCCCC-----CcC-ccccccCcEeec
Confidence 21 1111111111111 10 0135555555555544 222 444555555555
Q ss_pred eCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHH-HHHHHHHHhcCCCc
Q 006842 423 GGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG-AEFVADMLRYNNTI 501 (629)
Q Consensus 423 s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L 501 (629)
++|.|+. ++..+..+++|++|+|++|.|+... .+..+++|++|+|++|.|+... +..+ ..+++|
T Consensus 471 s~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~lp------~l~~l~~L~~L~Ls~N~l~~~~~p~~l----~~l~~L 535 (567)
T 1dce_A 471 SHNRLRA-----LPPALAALRCLEVLQASDNALENVD------GVANLPRLQELLLCNNRLQQSAAIQPL----VSCPRL 535 (567)
T ss_dssp CSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCCG------GGTTCSSCCEEECCSSCCCSSSTTGGG----GGCTTC
T ss_pred Ccccccc-----cchhhhcCCCCCEEECCCCCCCCCc------ccCCCCCCcEEECCCCCCCCCCCcHHH----hcCCCC
Confidence 5555552 3334445555555555555555321 2334455555555555554432 2222 223666
Q ss_pred CEEEcccCCCCcc
Q 006842 502 SILDLRANGLRDE 514 (629)
Q Consensus 502 ~~L~Ls~N~l~~~ 514 (629)
+.|+|++|.+++.
T Consensus 536 ~~L~L~~N~l~~~ 548 (567)
T 1dce_A 536 VLLNLQGNSLCQE 548 (567)
T ss_dssp CEEECTTSGGGGS
T ss_pred CEEEecCCcCCCC
Confidence 6666666665544
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=5.8e-17 Score=166.13 Aligned_cols=105 Identities=12% Similarity=-0.012 Sum_probs=47.3
Q ss_pred CEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCCh-hhHHHHHHHhc
Q 006842 249 ERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA-LGANALAKGLE 327 (629)
Q Consensus 249 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~ 327 (629)
++++.++++++.. +..+ .+++++|+|++|+|+... ..+|.++++|++|+|++|.+.. ++. .+|.
T Consensus 12 ~~v~C~~~~Lt~i-----P~~l--~~~l~~L~Ls~N~i~~i~----~~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTEI-----PSDL--PRNAIELRFVLTKLRVIQ----KGAFSGFGDLEKIEISQNDVLEVIEA----DVFS 76 (350)
T ss_dssp TEEEEESTTCCSC-----CTTC--CTTCSEEEEESCCCSEEC----TTSSTTCTTCCEEEEECCTTCCEECT----TSBC
T ss_pred CEEEecCCCCCcc-----CcCc--CCCCCEEEccCCcCCCcC----HHHHcCCCCCCEEECcCCCCCCccCh----hHhh
Confidence 4555666665542 2211 134666666666654211 1233445555555655555422 221 2234
Q ss_pred CCCCccE-EEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCc
Q 006842 328 GNKSLRE-LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA 373 (629)
Q Consensus 328 ~~~~L~~-L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 373 (629)
+++++++ +.+++|+++.. ....+..+++|++|++++|.++.
T Consensus 77 ~L~~l~~~l~~~~N~l~~l-----~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYI-----NPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp SCTTCCEEEEEEETTCCEE-----CTTSBCCCTTCCEEEEEEECCSS
T ss_pred cchhhhhhhcccCCccccc-----Cchhhhhcccccccccccccccc
Confidence 4444443 33344555442 12222344455555555555544
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=5.7e-16 Score=168.11 Aligned_cols=209 Identities=16% Similarity=0.172 Sum_probs=100.1
Q ss_pred CCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChh---------hHHHHHHHHhhcCCccEEe-ccCCCC
Q 006842 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS---------GFTSLAEALLENSTIRSLH-LNGNYG 314 (629)
Q Consensus 245 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~---------~~~~l~~~l~~~~~L~~L~-L~~n~i 314 (629)
+++|+.|+|++|.++ .++..+.++++|+.|++++|..... ....++..+..+++|+.|+ ++.|.+
T Consensus 348 ~~~L~~L~Ls~n~L~-----~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 348 DEQLFRCELSVEKST-----VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp TTTSSSCCCCHHHHH-----HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred CccceeccCChhhHH-----hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 355666666666543 2555555566666666654431000 0023455666777888887 565543
Q ss_pred ChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEc
Q 006842 315 GALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL 394 (629)
Q Consensus 315 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 394 (629)
... +.+.+++|.++. +.. ..|+.|++++|.++. ++. +..+++|++|+|
T Consensus 423 ~~L---------------~~l~l~~n~i~~-----l~~------~~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~L 470 (567)
T 1dce_A 423 DDL---------------RSKFLLENSVLK-----MEY------ADVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDL 470 (567)
T ss_dssp HHH---------------HHHHHHHHHHHH-----HHH------TTCSEEECTTSCCSS-----CCC-GGGGTTCCEEEC
T ss_pred chh---------------hhhhhhcccccc-----cCc------cCceEEEecCCCCCC-----CcC-ccccccCcEeec
Confidence 222 222233332221 110 125555555555554 222 455555555555
Q ss_pred cCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhH-HHHHHHHHhcCCCc
Q 006842 395 YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG-AKALSEVLKFHGNI 473 (629)
Q Consensus 395 s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~L 473 (629)
++|.++. ++..+..+++|++|+|++|.|+. ++ .+..+++|++|+|++|.|+... +. .+..+++|
T Consensus 471 s~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~-----lp-~l~~l~~L~~L~Ls~N~l~~~~~p~----~l~~l~~L 535 (567)
T 1dce_A 471 SHNRLRA-----LPPALAALRCLEVLQASDNALEN-----VD-GVANLPRLQELLLCNNRLQQSAAIQ----PLVSCPRL 535 (567)
T ss_dssp CSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC-----CG-GGTTCSSCCEEECCSSCCCSSSTTG----GGGGCTTC
T ss_pred Ccccccc-----cchhhhcCCCCCEEECCCCCCCC-----Cc-ccCCCCCCcEEECCCCCCCCCCCcH----HHhcCCCC
Confidence 5555553 34445555555555555555554 22 3444555555555555554332 11 22334555
Q ss_pred cEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEc
Q 006842 474 NTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506 (629)
Q Consensus 474 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 506 (629)
+.|+|++|.++...+ ....++..+++|+.|++
T Consensus 536 ~~L~L~~N~l~~~~~-~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 536 VLLNLQGNSLCQEEG-IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECTTSGGGGSSS-CTTHHHHHCTTCSEEEC
T ss_pred CEEEecCCcCCCCcc-HHHHHHHHCcccCccCC
Confidence 555555555543321 11122222366666653
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=1.6e-14 Score=161.76 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=91.2
Q ss_pred HHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChh
Q 006842 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (629)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (629)
.+..+..++.|+.|+|++|.+.. ++..+..+++|++|+|++|.|+. ++..+..+++|++|+|++|.|+..
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCSSC
T ss_pred ChhhhccCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCCcc
Confidence 34556667777777777777664 44445567777777777777763 445566667777777777777632
Q ss_pred HHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhh-hhh
Q 006842 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKH-MLF 537 (629)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~-L~~ 537 (629)
...+..+++|++|+|++|.|+.... .+..+++|++|+|++|.|.+. .|..+..+.. +..
T Consensus 286 -----p~~~~~l~~L~~L~L~~N~l~~lp~-----~~~~l~~L~~L~L~~N~l~~~----------~p~~~~~~~~~~~~ 345 (727)
T 4b8c_D 286 -----PAELGSCFQLKYFYFFDNMVTTLPW-----EFGNLCNLQFLGVEGNPLEKQ----------FLKILTEKSVTGLI 345 (727)
T ss_dssp -----CSSGGGGTTCSEEECCSSCCCCCCS-----STTSCTTCCCEECTTSCCCSH----------HHHHHHHHHHHHHH
T ss_pred -----ChhhcCCCCCCEEECCCCCCCccCh-----hhhcCCCccEEeCCCCccCCC----------ChHHHhhcchhhhH
Confidence 2223455777888888887764321 234458888888888888877 6666665533 345
Q ss_pred hhhhhhcchhhHHHHHHHhhhhcccceeecCCC
Q 006842 538 YSLCINYLQGAKCLAQSFKVVNEALTSIDLAFN 570 (629)
Q Consensus 538 L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N 570 (629)
++|++|.+++.. ...|+.|+++.|
T Consensus 346 l~l~~N~l~~~~---------p~~l~~l~l~~n 369 (727)
T 4b8c_D 346 FYLRDNRPEIPL---------PHERRFIEINTD 369 (727)
T ss_dssp HHHHHCCCCCCC---------CCC---------
T ss_pred HhhccCcccCcC---------ccccceeEeecc
Confidence 788888887642 256778888877
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=4.3e-15 Score=141.30 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=77.0
Q ss_pred cEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHh
Q 006842 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412 (629)
Q Consensus 333 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 412 (629)
+.++++++.++. ++..+. ++++.|++++|.|+.. .+..|..+++|++|+|++|.++.. .+..|.
T Consensus 14 ~~v~c~~~~l~~-----iP~~l~---~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKGLTE-----IPTNLP---ETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISEL----APDAFQ 77 (220)
T ss_dssp TEEECTTSCCSS-----CCSSCC---TTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEE----CTTTTT
T ss_pred CEEEcCCCCcCc-----CCCccC---cCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCc----CHHHhh
Confidence 456666666654 222221 3567777777766664 223455666666666666666653 244455
Q ss_pred cCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHH
Q 006842 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492 (629)
Q Consensus 413 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 492 (629)
.+++|++|+|++|.|+... ...+..+++|++|+|++|.|+...... +..+++|++|+|++|.|+......+.
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~----~~~f~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELP----KSLFEGLFSLQLLLLNANKINCLRVDA----FQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp TCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCcCCCEEECCCCcCCccC----HhHccCCCCCCEEECCCCCCCEeCHHH----cCCCCCCCEEECCCCcCCEECHHHHh
Confidence 5666666666666665421 122344456666666666555432221 22234455555555554433322222
Q ss_pred HHHhcCCCcCEEEcccCCCC
Q 006842 493 DMLRYNNTISILDLRANGLR 512 (629)
Q Consensus 493 ~~l~~~~~L~~L~Ls~N~l~ 512 (629)
.+++|++|+|++|.+.
T Consensus 150 ----~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 150 ----PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ----TCTTCCEEECCSSCEE
T ss_pred ----CCCCCCEEEeCCCCcC
Confidence 1244445555544443
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=1.3e-14 Score=162.30 Aligned_cols=225 Identities=13% Similarity=0.128 Sum_probs=89.6
Q ss_pred CCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhh-----HHHHHHHHhhcCCccEEeccCCCCChhhHH
Q 006842 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSG-----FTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (629)
Q Consensus 246 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-----~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (629)
+.++.|+|.+|.+..... ..|+.++|+.|.|.... +...+..+..++.|+.|+|++|.+..++.
T Consensus 173 ~~~~~l~L~~n~~~~~~~----------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~- 241 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ----------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISA- 241 (727)
T ss_dssp -----------------------------------------------------------CCCCCCEEECTTSCCSCCCG-
T ss_pred CccceEEeeCCCCCcchh----------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCCh-
Confidence 568889998888776311 12444455555443211 13345556667778888888877765543
Q ss_pred HHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCC
Q 006842 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (629)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (629)
.+..+++|++|+|++|.|+. ++..+ ..+++|++|+|++|.|+. ++..+..+++|++|+|++|.|+
T Consensus 242 ----~~~~l~~L~~L~Ls~N~l~~-----lp~~~-~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 242 ----NIFKYDFLTRLYLNGNSLTE-----LPAEI-KNLSNLRVLDLSHNRLTS-----LPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp ----GGGGCCSCSCCBCTTSCCSC-----CCGGG-GGGTTCCEEECTTSCCSS-----CCSSGGGGTTCSEEECCSSCCC
T ss_pred ----hhcCCCCCCEEEeeCCcCcc-----cChhh-hCCCCCCEEeCcCCcCCc-----cChhhcCCCCCCEEECCCCCCC
Confidence 23367777777777777763 23323 245567777777777774 5666677777777777777776
Q ss_pred hHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccC
Q 006842 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (629)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 480 (629)
. ++..|..+++|++|+|++|.|+......+...- ..+..|+|++|.++.. ....|+.|++++
T Consensus 307 ~-----lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~---~~~~~l~l~~N~l~~~----------~p~~l~~l~l~~ 368 (727)
T 4b8c_D 307 T-----LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS---VTGLIFYLRDNRPEIP----------LPHERRFIEINT 368 (727)
T ss_dssp C-----CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH---HHHHHHHHHHCCCCCC----------CCCC--------
T ss_pred c-----cChhhhcCCCccEEeCCCCccCCCChHHHhhcc---hhhhHHhhccCcccCc----------CccccceeEeec
Confidence 4 555566777777777777777765333332210 1122356666766532 124566777776
Q ss_pred CCCCHHH----HHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 481 CQIGASG----AEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 481 n~i~~~~----~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
|...... .......+..+..+....+++|-+.+.
T Consensus 369 n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 369 DGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp ---------------------------------CCCGG
T ss_pred ccccccccCCccccccchhhcccccceeeeeccccccc
Confidence 6211111 111111122235556667777776543
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=4.2e-14 Score=135.40 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=26.2
Q ss_pred CCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCC
Q 006842 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (629)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 428 (629)
++|++|+|++|.++.. .+..+..+++|++|++++|.++. ++..+..+++|++|++++|+|+
T Consensus 88 ~~L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVL----PSAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp TTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCC
T ss_pred CCcCEEECCCCcCCcc----ChhHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCC
Confidence 3444444444444432 12223344444444444444442 3333344444444444444444
No 122
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.39 E-value=6.5e-13 Score=135.21 Aligned_cols=144 Identities=9% Similarity=0.075 Sum_probs=90.4
Q ss_pred CCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccC--C-CCChHHHHHHHHHHh--cCCCccEEEeeCCCCCHHHHH
Q 006842 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM--N-DIGDEGAEKIADALK--QNRTITTIDLGGNNIHSKGAS 433 (629)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~--n-~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~ 433 (629)
++|++|+|..|.++..++..+. ...+++|++|+|+. | ...+.++..+...+. .+++|++|++.+|.+++.+..
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~--~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHH--HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHH--HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 4566666666666555433322 12566666666642 1 111111111222222 357788888888888776655
Q ss_pred HHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCC
Q 006842 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 510 (629)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 510 (629)
.++.. ..+++|++|+|++|.+++.++..+...++.+++|+.|+|++|.|++.+...+...+ ...+++++++
T Consensus 271 ~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 271 MFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-----PMKIDVSDSQ 341 (362)
T ss_dssp HHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-----CSEEECCSBC
T ss_pred HHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-----CCEEEecCCc
Confidence 55543 34578888888888888888777776666778888888888888888877777652 4557888776
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=2.3e-14 Score=136.28 Aligned_cols=63 Identities=21% Similarity=0.194 Sum_probs=26.2
Q ss_pred CCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCH
Q 006842 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (629)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 429 (629)
++|++|+|++|.|+.. ....+..+++|++|+|++|.++.. .+..|..+++|++|+|++|.|+.
T Consensus 80 ~~L~~L~Ls~N~l~~l----~~~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 80 RSLNSLVLYGNKITEL----PKSLFEGLFSLQLLLLNANKINCL----RVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp SSCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCEEECCCCcCCcc----CHhHccCCCCCCEEECCCCCCCEe----CHHHcCCCCCCCEEECCCCcCCE
Confidence 3444444444444432 112233444444444444444432 12233334444444444444443
No 124
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.39 E-value=9.9e-13 Score=133.86 Aligned_cols=209 Identities=14% Similarity=0.118 Sum_probs=94.2
Q ss_pred CCcCEEEccCCCCC-h---hHHHHHHHHHhhCCCCCEEEeeccCCChH-----HHHHHHHHHhcCCCccEEEeccCC-CC
Q 006842 218 IALKTLNLSGNPIG-D---EGVKCLCDILVDNAGVERLQLSSVDLRDE-----GAKAIAELLKNNSILRVLELNNNM-ID 287 (629)
Q Consensus 218 ~~L~~L~Ls~n~i~-~---~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-----~~~~l~~~l~~~~~L~~L~L~~n~-i~ 287 (629)
..++.|.+...... + ..+..+...+..+++|+.|.+......+. ....+...+..+|+|+.|+|++|. +.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 35788888865543 1 23334444444567888888866432210 001234455556666666666652 21
Q ss_pred hhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCC--C-CChhHHHHHHHhhc-cCCCCceE
Q 006842 288 YSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN--S-IGDEGIRALMSGLS-SRKGKLAV 363 (629)
Q Consensus 288 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n--~-l~~~~~~~l~~~l~-~~~~~L~~ 363 (629)
- +. + ..++|++|++..|.++......+.. ..+++|++|+|+.+ . ..+.++..+...+. ..+++|++
T Consensus 187 l------~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~ 256 (362)
T 2ra8_A 187 I------GK-K-PRPNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256 (362)
T ss_dssp C------CS-C-BCTTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE
T ss_pred e------cc-c-cCCCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE
Confidence 0 10 1 2455666666665555544433321 24556666655421 1 11111111211111 12334555
Q ss_pred EEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHH
Q 006842 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437 (629)
Q Consensus 364 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 437 (629)
|+|.+|.+++.+...+... ..+++|++|+|+.|.+++.|+..+...+..+++|+.|++++|.|++.++..+..
T Consensus 257 L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 257 LGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp EEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred EeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 5555554444332222211 123444445554444444444444444344444444444444444444444443
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=9.1e-15 Score=139.03 Aligned_cols=105 Identities=20% Similarity=0.205 Sum_probs=53.0
Q ss_pred cEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHH-HHHHcCCCccEEEccCCCCChHHHHHHHHHH
Q 006842 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA-EYIKNCKSLLWINLYMNDIGDEGAEKIADAL 411 (629)
Q Consensus 333 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 411 (629)
+++++++|.++. ++..+. ..+++|++++|.++.. .+ ..+..+++|++|++++|.|+.. .+..|
T Consensus 14 ~~l~~s~n~l~~-----iP~~~~---~~~~~L~L~~N~l~~~----~~~~~~~~l~~L~~L~L~~N~i~~i----~~~~~ 77 (220)
T 2v70_A 14 TTVDCSNQKLNK-----IPEHIP---QYTAELRLNNNEFTVL----EATGIFKKLPQLRKINFSNNKITDI----EEGAF 77 (220)
T ss_dssp TEEECCSSCCSS-----CCSCCC---TTCSEEECCSSCCCEE----CCCCCGGGCTTCCEEECCSSCCCEE----CTTTT
T ss_pred CEeEeCCCCccc-----CccCCC---CCCCEEEcCCCcCCcc----CchhhhccCCCCCEEECCCCcCCEE----CHHHh
Confidence 466666666654 222221 2456666666666653 11 1245556666666666665543 22234
Q ss_pred hcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCCh
Q 006842 412 KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (629)
Q Consensus 412 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (629)
..+++|++|+|++|.|+.. .+..+..+++|++|+|++|.|+.
T Consensus 78 ~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~ 119 (220)
T 2v70_A 78 EGASGVNEILLTSNRLENV----QHKMFKGLESLKTLMLRSNRITC 119 (220)
T ss_dssp TTCTTCCEEECCSSCCCCC----CGGGGTTCSSCCEEECTTSCCCC
T ss_pred CCCCCCCEEECCCCccCcc----CHhHhcCCcCCCEEECCCCcCCe
Confidence 4555555555555555543 12234444555555555555543
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=5.6e-14 Score=134.52 Aligned_cols=153 Identities=19% Similarity=0.119 Sum_probs=97.9
Q ss_pred CCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhc
Q 006842 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (629)
Q Consensus 248 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 327 (629)
.+.++.+++.++.. +..+ .++|++|+|++|.|+... +..+..+++|++|++++|.++.++. ..+.
T Consensus 21 ~~~v~c~~~~l~~i-----p~~~--~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~ 85 (229)
T 3e6j_A 21 GTTVDCRSKRHASV-----PAGI--PTNAQILYLHDNQITKLE----PGVFDSLINLKELYLGSNQLGALPV----GVFD 85 (229)
T ss_dssp TTEEECTTSCCSSC-----CSCC--CTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTT
T ss_pred CCEeEccCCCcCcc-----CCCC--CCCCCEEEcCCCccCccC----HHHhhCccCCcEEECCCCCCCCcCh----hhcc
Confidence 45566665555542 1111 155777777777765321 3344566777777777777766543 3355
Q ss_pred CCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHH
Q 006842 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (629)
Q Consensus 328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 407 (629)
.+++|++|+|++|.++.. .......+++|++|++++|.++. ++..+..+++|++|++++|.++.. .
T Consensus 86 ~l~~L~~L~Ls~N~l~~l-----~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~----~ 151 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVL-----PSAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSI----P 151 (229)
T ss_dssp TCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCCC----C
T ss_pred cCCCcCEEECCCCcCCcc-----ChhHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCcc----C
Confidence 677888888888877753 22333456678888888888875 556677888888888888888763 2
Q ss_pred HHHHhcCCCccEEEeeCCCCCH
Q 006842 408 ADALKQNRTITTIDLGGNNIHS 429 (629)
Q Consensus 408 ~~~l~~~~~L~~L~Ls~n~i~~ 429 (629)
...+..+++|++|++++|.+..
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCT
T ss_pred HHHHhCCCCCCEEEeeCCCccC
Confidence 2345556677777777776653
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=2e-14 Score=136.72 Aligned_cols=152 Identities=17% Similarity=0.112 Sum_probs=80.0
Q ss_pred cEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHH
Q 006842 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384 (629)
Q Consensus 305 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 384 (629)
+.+++++|.++.++. . -.+.+++|++++|.++... .......+++|++|++++|.|+.. .+..|.
T Consensus 14 ~~l~~s~n~l~~iP~-----~--~~~~~~~L~L~~N~l~~~~----~~~~~~~l~~L~~L~L~~N~i~~i----~~~~~~ 78 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-----H--IPQYTAELRLNNNEFTVLE----ATGIFKKLPQLRKINFSNNKITDI----EEGAFE 78 (220)
T ss_dssp TEEECCSSCCSSCCS-----C--CCTTCSEEECCSSCCCEEC----CCCCGGGCTTCCEEECCSSCCCEE----CTTTTT
T ss_pred CEeEeCCCCcccCcc-----C--CCCCCCEEEcCCCcCCccC----chhhhccCCCCCEEECCCCcCCEE----CHHHhC
Confidence 466666666655432 1 1234566666666665521 111113445666666666666654 233456
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHH
Q 006842 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (629)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (629)
.+++|++|+|++|.++.. .+..|..+++|++|++++|+|+.. .+..+..+++|++|+|++|.|+...+..
T Consensus 79 ~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~-- 148 (220)
T 2v70_A 79 GASGVNEILLTSNRLENV----QHKMFKGLESLKTLMLRSNRITCV----GNDSFIGLSSVRLLSLYDNQITTVAPGA-- 148 (220)
T ss_dssp TCTTCCEEECCSSCCCCC----CGGGGTTCSSCCEEECTTSCCCCB----CTTSSTTCTTCSEEECTTSCCCCBCTTT--
T ss_pred CCCCCCEEECCCCccCcc----CHhHhcCCcCCCEEECCCCcCCeE----CHhHcCCCccCCEEECCCCcCCEECHHH--
Confidence 666666666666666553 233455566666666666666653 2233444566666666666655432221
Q ss_pred HHHhcCCCccEEeccCCCC
Q 006842 465 EVLKFHGNINTLKLGWCQI 483 (629)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i 483 (629)
+..+++|++|+|++|.+
T Consensus 149 --~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 149 --FDTLHSLSTLNLLANPF 165 (220)
T ss_dssp --TTTCTTCCEEECCSCCE
T ss_pred --hcCCCCCCEEEecCcCC
Confidence 12234444455444443
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.35 E-value=2.4e-15 Score=154.05 Aligned_cols=202 Identities=14% Similarity=0.075 Sum_probs=122.5
Q ss_pred CEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhh
Q 006842 221 KTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE 300 (629)
Q Consensus 221 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 300 (629)
++++.+++.++... ..+ .+++++|+|++|+|+.... ..+.++++|++|+|++|++...- -..+|.+
T Consensus 12 ~~v~C~~~~Lt~iP-----~~l--~~~l~~L~Ls~N~i~~i~~----~~f~~l~~L~~L~Ls~N~i~~~i---~~~~f~~ 77 (350)
T 4ay9_X 12 RVFLCQESKVTEIP-----SDL--PRNAIELRFVLTKLRVIQK----GAFSGFGDLEKIEISQNDVLEVI---EADVFSN 77 (350)
T ss_dssp TEEEEESTTCCSCC-----TTC--CTTCSEEEEESCCCSEECT----TSSTTCTTCCEEEEECCTTCCEE---CTTSBCS
T ss_pred CEEEecCCCCCccC-----cCc--CCCCCEEEccCCcCCCcCH----HHHcCCCCCCEEECcCCCCCCcc---ChhHhhc
Confidence 56778888777532 111 2578888898888886422 23556788888999888874210 0123445
Q ss_pred cCCccE-EeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccC-CCCCchhHHH
Q 006842 301 NSTIRS-LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN-NSISAKGAFH 378 (629)
Q Consensus 301 ~~~L~~-L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~ 378 (629)
++++++ +.+.+|+++.++. ..|..+++|++|++++|.++.. .........++..|++.+ +.+...
T Consensus 78 L~~l~~~l~~~~N~l~~l~~----~~f~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~l~~l~l~~~~~i~~l---- 144 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINP----EAFQNLPNLQYLLISNTGIKHL-----PDVHKIHSLQKVLLDIQDNINIHTI---- 144 (350)
T ss_dssp CTTCCEEEEEEETTCCEECT----TSBCCCTTCCEEEEEEECCSSC-----CCCTTCCBSSCEEEEEESCTTCCEE----
T ss_pred chhhhhhhcccCCcccccCc----hhhhhccccccccccccccccC-----Cchhhcccchhhhhhhccccccccc----
Confidence 666654 5566778877654 4567788888888888887652 111112333577777755 456553
Q ss_pred HHHHHHcC-CCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeC-CCCCHHHHHHHHHHhhcCCcccEEECcCCCCC
Q 006842 379 VAEYIKNC-KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGG-NNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 379 l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
-...+..+ ..++.|++++|.|+. ++.......+|++|++++ |.++... ..++..+++|++||+++|+|+
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~-----i~~~~f~~~~L~~l~l~~~n~l~~i~----~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQE-----IHNSAFNGTQLDELNLSDNNNLEELP----NDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCE-----ECTTSSTTEEEEEEECTTCTTCCCCC----TTTTTTEECCSEEECTTSCCC
T ss_pred cccchhhcchhhhhhccccccccC-----CChhhccccchhHHhhccCCcccCCC----HHHhccCcccchhhcCCCCcC
Confidence 11223333 357778888887765 333333445677777764 5555431 123455577777777777776
Q ss_pred hh
Q 006842 457 AD 458 (629)
Q Consensus 457 ~~ 458 (629)
..
T Consensus 216 ~l 217 (350)
T 4ay9_X 216 SL 217 (350)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=1.7e-13 Score=124.27 Aligned_cols=65 Identities=17% Similarity=0.069 Sum_probs=28.8
Q ss_pred hcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
..+++|++|++++|.++.. ..+..+++|++|++++|.++...+..+ ..+++|++|++++|.+++.
T Consensus 46 ~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~Ls~N~l~~~ 110 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLA----EKLPNLTHLNLSGNKLKDI 110 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSCCCHHH----HHCTTCCEEECBSSSCCSS
T ss_pred HhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchHHHHHH----hhCCCCCEEeccCCccCcc
Confidence 3344455555555544432 122333445555555555443211111 1235566666666655543
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=3.4e-13 Score=119.63 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=7.4
Q ss_pred CCcCEEEcccCCCCc
Q 006842 499 NTISILDLRANGLRD 513 (629)
Q Consensus 499 ~~L~~L~Ls~N~l~~ 513 (629)
++|++|++++|.+++
T Consensus 88 ~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 88 PNLTHLNLSGNKIKD 102 (149)
T ss_dssp TTCCEEECTTSCCCS
T ss_pred CCCCEEECCCCcCCC
Confidence 445555555554443
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=7.1e-14 Score=141.78 Aligned_cols=222 Identities=11% Similarity=0.077 Sum_probs=104.1
Q ss_pred cCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCC----CchhH
Q 006842 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSI----SAKGA 376 (629)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l----~~~~~ 376 (629)
+++|++|++.. .++.++. .+|.+|++|++|++.+|.+... ....+..+.++..+.+..+.. ...
T Consensus 100 ~~~L~~l~L~~-~i~~I~~----~aF~~~~~L~~l~l~~n~i~~i-----~~~aF~~~~~l~~l~~~~~~~~~~~~~i-- 167 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIED----AAFKGCDNLKICQIRKKTAPNL-----LPEALADSVTAIFIPLGSSDAYRFKNRW-- 167 (329)
T ss_dssp CTTCCC-CBCT-TCCEECT----TTTTTCTTCCEEEBCCSSCCEE-----CTTSSCTTTCEEEECTTCTHHHHTSTTT--
T ss_pred cCCCcEEECCc-cccchhH----HHhhcCcccceEEcCCCCcccc-----chhhhcCCCceEEecCcchhhhhccccc--
Confidence 56666666666 5555544 3455666666666666665542 222223343444444433110 000
Q ss_pred HHHHHHHHcCCCcc-EEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCC
Q 006842 377 FHVAEYIKNCKSLL-WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455 (629)
Q Consensus 377 ~~l~~~l~~~~~L~-~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 455 (629)
-...|..+..|+ .+.+.....-.. .+...-....+++.+.+.++ +.......+. ..|++|++|+|++|.+
T Consensus 168 --~~~~f~~~~~L~~~i~~~~~~~l~~---~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~---~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 168 --EHFAFIEGEPLETTIQVGAMGKLED---EIMKAGLQPRDINFLTIEGK-LDNADFKLIR---DYMPNLVSLDISKTNA 238 (329)
T ss_dssp --TTSCEEESCCCEEEEEECTTCCHHH---HHHHTTCCGGGCSEEEEEEC-CCHHHHHHHH---HHCTTCCEEECTTBCC
T ss_pred --cccccccccccceeEEecCCCcHHH---HHhhcccCccccceEEEeee-ecHHHHHHHH---HhcCCCeEEECCCCCc
Confidence 001133444554 344433211000 01111011344555555554 3333222222 2256666666666666
Q ss_pred ChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcC-EEEcccCCCCccccccCCCchhhhHHHHhhhh
Q 006842 456 GADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTIS-ILDLRANGLRDEVCSGCNGLSFFHSAIYSLKH 534 (629)
Q Consensus 456 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~-~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~ 534 (629)
+..+...| ..|.+|+.|+|.+| +...+...|.. |++|+ .+++.+ .+..+ .+..|.+|++
T Consensus 239 ~~I~~~aF----~~~~~L~~l~l~~n-i~~I~~~aF~~----~~~L~~~l~l~~-~l~~I----------~~~aF~~c~~ 298 (329)
T 3sb4_A 239 TTIPDFTF----AQKKYLLKIKLPHN-LKTIGQRVFSN----CGRLAGTLELPA-SVTAI----------EFGAFMGCDN 298 (329)
T ss_dssp CEECTTTT----TTCTTCCEEECCTT-CCEECTTTTTT----CTTCCEEEEECT-TCCEE----------CTTTTTTCTT
T ss_pred ceecHhhh----hCCCCCCEEECCcc-cceehHHHhhC----ChhccEEEEEcc-cceEE----------chhhhhCCcc
Confidence 55443333 34456666666665 54444433333 36666 666666 45444 3456666666
Q ss_pred hhhhhhhhhcchhhHHHHHHHhhhhcccceee
Q 006842 535 MLFYSLCINYLQGAKCLAQSFKVVNEALTSID 566 (629)
Q Consensus 535 L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~Ld 566 (629)
|+.+++++|.++.+ +...+..+++|+.++
T Consensus 299 L~~l~l~~n~i~~I---~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 299 LRYVLATGDKITTL---GDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEEECSSCCCEE---CTTTTCTTCCCCEEE
T ss_pred CCEEEeCCCccCcc---chhhhcCCcchhhhc
Confidence 66666666666553 222222336666665
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=5.1e-13 Score=121.14 Aligned_cols=137 Identities=15% Similarity=0.183 Sum_probs=66.3
Q ss_pred CceEEEccCCCCC-chhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHH
Q 006842 360 KLAVLDIGNNSIS-AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (629)
Q Consensus 360 ~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 438 (629)
+|++|++++|.++ .. ++..+..+++|++|++++|.+++. ..+..+++|++|++++|.++.. ++..
T Consensus 25 ~L~~L~l~~n~l~~~~----i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 90 (168)
T 2ell_A 25 AVRELVLDNCKSNDGK----IEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDML 90 (168)
T ss_dssp SCSEEECCSCBCBTTB----CSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCHH
T ss_pred cCCEEECCCCCCChhh----HHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHHH
Confidence 4555555555554 11 233334455555555555555542 3344455555556655555542 2223
Q ss_pred hhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
+..+++|++|++++|.+++.... ..+..+++|++|++++|.++.... .....+..+++|++|++++|.+...
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~---~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTL---EPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGG---GGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTSCBC
T ss_pred HhhCCCCCEEeccCCccCcchhH---HHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCChhhc
Confidence 33345566666666655543110 122344556666666665544322 1112233446666666666665543
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=4.1e-12 Score=112.58 Aligned_cols=130 Identities=22% Similarity=0.247 Sum_probs=67.8
Q ss_pred CCccEEeccCCCCC--hhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHH
Q 006842 302 STIRSLHLNGNYGG--ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (629)
Q Consensus 302 ~~L~~L~L~~n~i~--~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (629)
++|++|++++|.++ ..+ ..+..+++|++|++++|.+++. ..+ ..+++|++|++++|.++.. +
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~------~~~-~~l~~L~~L~Ls~n~i~~~----~ 80 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-----GLTDEFEELEFLSTINVGLTSI------ANL-PKLNKLKKLELSDNRVSGG----L 80 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-----SCCTTCTTCCEEECTTSCCCCC------TTC-CCCTTCCEEECCSSCCCSC----T
T ss_pred ccCeEEEccCCcCChhHHH-----HHHhhcCCCcEEECcCCCCCCc------hhh-hcCCCCCEEECCCCcccch----H
Confidence 45555555555554 221 2334556666666666666552 111 3445566666666666654 4
Q ss_pred HHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECc
Q 006842 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA 451 (629)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 451 (629)
+..+..+++|++|++++|.+++.. .+..+..+++|++|++++|.++.... .....+..+++|++|+++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred HHHhhhCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 444555666666666666666521 12345555666666666666554321 001233444566666554
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=6.7e-13 Score=121.39 Aligned_cols=60 Identities=20% Similarity=0.121 Sum_probs=26.6
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHHhcC-CCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCC
Q 006842 385 NCKSLLWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
.+.+|++|++++|.++. ++. +..+ ++|++|++++|.|+.. ..+..+++|++|++++|.|+
T Consensus 17 ~~~~L~~L~l~~n~l~~-----i~~-~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-----IEN-LGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp CTTSCEEEECTTSCCCS-----CCC-GGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCC
T ss_pred CcCCceEEEeeCCCCch-----hHH-hhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCCccc
Confidence 34455555555555543 111 2222 2455555555555441 23334444444555444444
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=6.1e-14 Score=131.05 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=20.1
Q ss_pred HHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCch
Q 006842 529 IYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDD 575 (629)
Q Consensus 529 ~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~ 575 (629)
+..+++|+.|++++|++++...+ ..+.. .++|++|++++|.+++.
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~-~~l~~-l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEI-DKLAA-LDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHH-HHHTT-TTTCSEEEECSCHHHHH
T ss_pred cccCCCCCEEECCCCcCCchhHH-HHHhc-CCCCCEEEecCCccccc
Confidence 44444444444444444443221 11221 25555556655555443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=2.1e-13 Score=138.28 Aligned_cols=247 Identities=14% Similarity=0.130 Sum_probs=131.2
Q ss_pred CCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHH
Q 006842 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (629)
Q Consensus 246 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (629)
.++++|.++++ +...+...+.. .+++|++|||++|+|...... . ...+.++.+.+..+.|.. .+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~---~l~~L~~LdLs~n~i~~~~~~---~--~~~~~~~~~~~~~~~I~~-------~a 88 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRD---EFPSLKVLDISNAEIKMYSGK---A--GTYPNGKFYIYMANFVPA-------YA 88 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHH---SCTTCCEEEEEEEEECCEEES---S--SSSGGGCCEEECTTEECT-------TT
T ss_pred CceeEEEEecc-ccHHHHHHHHH---hhccCeEEecCcceeEEecCc---c--ccccccccccccccccCH-------HH
Confidence 57899999875 45444443433 268899999999988611000 0 011224455555554433 34
Q ss_pred hcC--------CCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCC
Q 006842 326 LEG--------NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (629)
Q Consensus 326 l~~--------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (629)
|.+ |++|++|+|.. .++. +....+..+++|+.|++++|.+... -..+|..+.++.++.+..+
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~i~~-----I~~~aF~~~~~L~~l~l~~n~i~~i----~~~aF~~~~~l~~l~~~~~ 158 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-KIKN-----IEDAAFKGCDNLKICQIRKKTAPNL----LPEALADSVTAIFIPLGSS 158 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-TCCE-----ECTTTTTTCTTCCEEEBCCSSCCEE----CTTSSCTTTCEEEECTTCT
T ss_pred hcccccccccccCCCcEEECCc-cccc-----hhHHHhhcCcccceEEcCCCCcccc----chhhhcCCCceEEecCcch
Confidence 667 88899999888 7766 3344446777888888888887765 2345566666776665542
Q ss_pred CC--ChHHHHHHHHHHhcCCCcc-EEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCcc
Q 006842 398 DI--GDEGAEKIADALKQNRTIT-TIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474 (629)
Q Consensus 398 ~l--~~~~~~~l~~~l~~~~~L~-~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 474 (629)
.. ....+ -..+|..+..|+ .+.+....--. ..+...-....+++.+.+.++ +.......+. ..+++|+
T Consensus 159 ~~~~~~~~i--~~~~f~~~~~L~~~i~~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~---~~~~~L~ 229 (329)
T 3sb4_A 159 DAYRFKNRW--EHFAFIEGEPLETTIQVGAMGKLE---DEIMKAGLQPRDINFLTIEGK-LDNADFKLIR---DYMPNLV 229 (329)
T ss_dssp HHHHTSTTT--TTSCEEESCCCEEEEEECTTCCHH---HHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHH---HHCTTCC
T ss_pred hhhhccccc--cccccccccccceeEEecCCCcHH---HHHhhcccCccccceEEEeee-ecHHHHHHHH---HhcCCCe
Confidence 11 00000 001233455555 44444332111 011111112345666666654 3333333222 2356666
Q ss_pred EEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhh-hhhhhh
Q 006842 475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHML-FYSLCI 542 (629)
Q Consensus 475 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~-~L~Ls~ 542 (629)
.|+|.+|.++..+...|.. |++|+.|+|.+| +..+ ....|.++++|+ .+++.+
T Consensus 230 ~l~L~~n~i~~I~~~aF~~----~~~L~~l~l~~n-i~~I----------~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 230 SLDISKTNATTIPDFTFAQ----KKYLLKIKLPHN-LKTI----------GQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEECTTBCCCEECTTTTTT----CTTCCEEECCTT-CCEE----------CTTTTTTCTTCCEEEEECT
T ss_pred EEECCCCCcceecHhhhhC----CCCCCEEECCcc-ccee----------hHHHhhCChhccEEEEEcc
Confidence 6666666666555444433 366666666665 4444 334455555555 555544
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=3.6e-12 Score=116.50 Aligned_cols=133 Identities=18% Similarity=0.173 Sum_probs=64.2
Q ss_pred cCCccEEeccCCCCChhhHHHHHHHhcCC-CCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHH
Q 006842 301 NSTIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (629)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (629)
+.+|++|++++|.++.++ .+..+ ++|++|++++|.+++. ..+ ..+++|++|++++|.++.. .
T Consensus 18 ~~~L~~L~l~~n~l~~i~------~~~~~~~~L~~L~Ls~N~l~~~------~~l-~~l~~L~~L~Ls~N~l~~~----~ 80 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIE------NLGATLDQFDAIDFSDNEIRKL------DGF-PLLRRLKTLLVNNNRICRI----G 80 (176)
T ss_dssp TTSCEEEECTTSCCCSCC------CGGGGTTCCSEEECCSSCCCEE------CCC-CCCSSCCEEECCSSCCCEE----C
T ss_pred cCCceEEEeeCCCCchhH------HhhhcCCCCCEEECCCCCCCcc------ccc-ccCCCCCEEECCCCccccc----C
Confidence 344555555555544331 11122 2555555555555542 111 2344566666666665543 1
Q ss_pred HHHHHcCCCccEEEccCCCCChHHHHHHHH--HHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCC
Q 006842 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIAD--ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (629)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (629)
+..+..+++|++|++++|.+++ ++. .+..+++|++|++++|.++..... -...+..+++|++||+++|.+.
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~-----~~~~~~l~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEECCHH
T ss_pred cchhhcCCCCCEEECCCCcCCc-----chhhHhhhcCCCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcCCHH
Confidence 1223555666666666666654 222 344556666666666655432111 1112344566666666665543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=8.6e-13 Score=123.19 Aligned_cols=114 Identities=18% Similarity=0.102 Sum_probs=87.5
Q ss_pred HHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcc
Q 006842 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYL 545 (629)
Q Consensus 466 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l 545 (629)
.+..+++|++|++++|.++... .+..+ ++|++|++++|.+... +..+..+++|+.|++++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l----~~L~~L~l~~n~l~~l-----------~~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGM----ENLRILSLGRNLIKKI-----------ENLDAVADTLEELWISYNQI 105 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHH----TTCCEEEEEEEEECSC-----------SSHHHHHHHCSEEEEEEEEC
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccC----CCCCEEECCCCCcccc-----------cchhhcCCcCCEEECcCCcC
Confidence 3344578888888888877643 45454 9999999999988854 66778889999999999999
Q ss_pred hhhHHHHHHHhhhhcccceeecCCCCCCchhH-HHHHHHHhcCCccceeeeeccCCccchhHH
Q 006842 546 QGAKCLAQSFKVVNEALTSIDLAFNEIRDDGA-FAIAQALKANEDVAVTSLNLANNFLTKFGQ 607 (629)
Q Consensus 546 ~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~-~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~ 607 (629)
+++. .+... ++|++|++++|+|++... ..+... ++|++|++++|++++..+
T Consensus 106 ~~l~----~~~~l-~~L~~L~l~~N~i~~~~~~~~l~~l------~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 106 ASLS----GIEKL-VNLRVLYMSNNKITNWGEIDKLAAL------DKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp CCHH----HHHHH-HHSSEEEESEEECCCHHHHHHHTTT------TTCSEEEECSCHHHHHHH
T ss_pred CcCC----ccccC-CCCCEEECCCCcCCchhHHHHHhcC------CCCCEEEecCCccccccc
Confidence 9854 23323 889999999999998543 334333 479999999999988754
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=1.3e-13 Score=128.10 Aligned_cols=132 Identities=18% Similarity=0.143 Sum_probs=79.7
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHH-HHhcCCCccEEEeeCCCCCHHHHHHHHHH
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGGNNIHSKGASAIARV 438 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 438 (629)
.-+.+++++|.++. ++..+ ..+|++|++++|.++.. .+. .+..+++|++|++++|.|+.. .+..
T Consensus 9 ~~~~l~~s~~~l~~-----ip~~~--~~~l~~L~l~~n~i~~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 73 (192)
T 1w8a_A 9 EGTTVDCTGRGLKE-----IPRDI--PLHTTELLLNDNELGRI----SSDGLFGRLPHLVKLELKRNQLTGI----EPNA 73 (192)
T ss_dssp ETTEEECTTSCCSS-----CCSCC--CTTCSEEECCSCCCCSB----CCSCSGGGCTTCCEEECCSSCCCCB----CTTT
T ss_pred CCCEEEcCCCCcCc-----CccCC--CCCCCEEECCCCcCCcc----CCccccccCCCCCEEECCCCCCCCc----CHhH
Confidence 34678888888776 33322 23788888888877663 111 256677788888888877764 2345
Q ss_pred hhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCcc
Q 006842 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (629)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 514 (629)
+..+++|++|+|++|+|+...... +..+++|++|+|++|+|+...+..+. .+++|++|+|++|.+.+.
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISNKM----FLGLHQLKTLNLYDNQISCVMPGSFE----HLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECSSS----STTCTTCCEEECCSSCCCEECTTSST----TCTTCCEEECTTCCBCCS
T ss_pred cCCcccCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCCeeCHHHhh----cCCCCCEEEeCCCCccCc
Confidence 566677777777777776543322 23345666666666666554333332 225666666666666544
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.10 E-value=1.1e-11 Score=115.05 Aligned_cols=84 Identities=20% Similarity=0.269 Sum_probs=34.9
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHh
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (629)
+|++|+|++|.|+.. .+..|..+++|++|+|++|.++.. .+..+..+++|++|++++|+|+.. .+..+
T Consensus 55 ~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~ 122 (192)
T 1w8a_A 55 HLVKLELKRNQLTGI----EPNAFEGASHIQELQLGENKIKEI----SNKMFLGLHQLKTLNLYDNQISCV----MPGSF 122 (192)
T ss_dssp TCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSCCCCEE----CSSSSTTCTTCCEEECCSSCCCEE----CTTSS
T ss_pred CCCEEECCCCCCCCc----CHhHcCCcccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCee----CHHHh
Confidence 444444444444442 233344444444444444444432 122233344444444444444432 12223
Q ss_pred hcCCcccEEECcCCCC
Q 006842 440 KDNSVITSLDLAYNPI 455 (629)
Q Consensus 440 ~~~~~L~~L~Ls~n~i 455 (629)
..+++|++|+|++|++
T Consensus 123 ~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 123 EHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTCTTCCEEECTTCCB
T ss_pred hcCCCCCEEEeCCCCc
Confidence 3334444444444444
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.08 E-value=3.1e-12 Score=118.67 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=55.3
Q ss_pred ceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhh
Q 006842 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK 440 (629)
Q Consensus 361 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 440 (629)
-+.+++++|.++. ++..+ .++|++|++++|.++. ++..+..+++|++|++++|.|+.. ....+.
T Consensus 12 ~~~l~~~~~~l~~-----ip~~~--~~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i----~~~~f~ 75 (193)
T 2wfh_A 12 DTVVRCSNKGLKV-----LPKGI--PRDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTL----SNQSFS 75 (193)
T ss_dssp TTEEECTTSCCSS-----CCSCC--CTTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCC----CTTTTT
T ss_pred CCEEEcCCCCCCc-----CCCCC--CCCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEe----CHhHcc
Confidence 3566777776665 23211 2466666766666664 334555666666666666666653 122344
Q ss_pred cCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCH
Q 006842 441 DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (629)
Q Consensus 441 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (629)
.+++|++|+|++|.|+...... +..+++|++|+|++|.|+.
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~----f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRT----FDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCEEECCCCccCEeCHHH----hCCCCCCCEEECCCCCCCe
Confidence 4566666666666655433221 1223444444444444443
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.08 E-value=1.2e-11 Score=114.67 Aligned_cols=107 Identities=20% Similarity=0.206 Sum_probs=58.9
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHh
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (629)
+|++|++++|.|+. ++..+..+++|++|++++|.|+.. .+..|..+++|++|+|++|.|+... +..+
T Consensus 32 ~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i----~~~~f~~l~~L~~L~Ls~N~l~~i~----~~~f 98 (193)
T 2wfh_A 32 DVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTL----SNQSFSNMTQLLTLILSYNRLRCIP----PRTF 98 (193)
T ss_dssp TCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCBCC----TTTT
T ss_pred CCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEe----CHhHccCCCCCCEEECCCCccCEeC----HHHh
Confidence 46666666666654 334455666666666666666553 2234555666666666666666531 2234
Q ss_pred hcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCC
Q 006842 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 483 (629)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 483 (629)
..+++|++|+|++|.|+...... +..+++|+.|+|++|.+
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVPEGA----FNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEEECCCCCCCeeChhh----hhcCccccEEEeCCCCe
Confidence 55566666666666665432221 22335555555555554
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=4.2e-12 Score=116.12 Aligned_cols=131 Identities=19% Similarity=0.080 Sum_probs=66.8
Q ss_pred ccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHh
Q 006842 417 ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR 496 (629)
Q Consensus 417 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 496 (629)
.+.+++++++++.. +.. ..++|++|++++|.++...... +..+++|++|++++|.++......+.
T Consensus 9 ~~~l~~~~~~l~~~-----p~~--~~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~---- 73 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-----PTG--IPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQIQSLPDGVFD---- 73 (177)
T ss_dssp TTEEECCSSCCSSC-----CTT--CCTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTT----
T ss_pred CCEEEecCCCCccC-----CCC--CCCCCcEEEeCCCcccEeCHHH----hcCcccccEEECCCCcceEeChhHcc----
Confidence 45667777766652 211 1256777777777665432221 23345666666666666544332222
Q ss_pred cCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCch
Q 006842 497 YNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDD 575 (629)
Q Consensus 497 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~ 575 (629)
.+++|++|++++|++++. .+..+..+++|++|++++|+++++. .......++|++|+|++|.+...
T Consensus 74 ~l~~L~~L~l~~N~l~~~----------~~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSL----------PNGVFDKLTQLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCTTCCEEECCSSCCCCC----------CTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCEEECCCCCcccc----------CHHHhhCCcccCEEECcCCcceEeC---HHHhcCCcccCEEEecCCCeecc
Confidence 236666666666666655 2333445555555555555555421 11111124455555555555543
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=7.5e-11 Score=107.75 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=7.7
Q ss_pred HcCCCccEEEccCCCCC
Q 006842 384 KNCKSLLWINLYMNDIG 400 (629)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~ 400 (629)
..+++|++|++++|.++
T Consensus 73 ~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TTCTTCCEEECCSSCCC
T ss_pred cCCCccCEEECCCCCcc
Confidence 34444444444444444
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.86 E-value=5.2e-10 Score=101.28 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=41.9
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHh
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (629)
+|++|+|++|.|+.. .+..|..+++|++|+|++|+|+.. .+..|..+++|++|+|++|+|+.. ....+
T Consensus 31 ~l~~L~L~~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l----~~~~f~~l~~L~~L~L~~N~l~~~----~~~~~ 98 (170)
T 3g39_A 31 TTQVLYLYDNQITKL----EPGVFDRLTQLTRLDLDNNQLTVL----PAGVFDKLTQLTQLSLNDNQLKSI----PRGAF 98 (170)
T ss_dssp TCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTT
T ss_pred CCcEEEcCCCcCCcc----ChhhhcCcccCCEEECCCCCcCcc----ChhhccCCCCCCEEECCCCccCEe----CHHHh
Confidence 455555555555553 233445555555555555555542 222234455555555555555542 11223
Q ss_pred hcCCcccEEECcCCCCC
Q 006842 440 KDNSVITSLDLAYNPIG 456 (629)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~ 456 (629)
..+++|++|+|++|++.
T Consensus 99 ~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred cCCCCCCEEEeCCCCCC
Confidence 44455555555555553
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.84 E-value=3.2e-09 Score=94.81 Aligned_cols=93 Identities=12% Similarity=0.178 Sum_probs=70.3
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCC-CCHHHHHHHHHHhhcCCCcCEEEccCC-CCChhHHHHHH
Q 006842 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGVKCLC 239 (629)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~ 239 (629)
..|++||+++|.|++.++..+ ..|++|++|+|++|. |+|.++..+...-..+++|++|+|++| .|++.++..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L- 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL- 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-
T ss_pred ceEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-
Confidence 468899999999999886543 567899999999986 999888888653111245888899887 4888886654
Q ss_pred HHHhhCCCCCEEEeeccC-CChHH
Q 006842 240 DILVDNAGVERLQLSSVD-LRDEG 262 (629)
Q Consensus 240 ~~l~~~~~L~~L~L~~n~-l~~~~ 262 (629)
..+++|++|+|++|. +++.+
T Consensus 136 ---~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 136 ---HHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ---GGCTTCCEEEEESCTTCCCHH
T ss_pred ---hcCCCCCEEECCCCCCCCchH
Confidence 346888888888875 77654
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=9.4e-10 Score=99.56 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=16.9
Q ss_pred HcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCC
Q 006842 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (629)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 428 (629)
..+++|++|+|++|.|+.. ....+..+++|++|+|++|.++
T Consensus 75 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSI----PRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCCCCEEECCCCccCEe----CHHHhcCCCCCCEEEeCCCCCC
Confidence 3444444444444444432 1112333444444444444443
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.79 E-value=7.3e-09 Score=92.50 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=67.4
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCC-CCChhHHHHHHHHHhhCCCCCEEEeeccC-CChHHHHHHH
Q 006842 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIA 267 (629)
Q Consensus 190 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~ 267 (629)
..|++||+++|.|++.++..+ ..+++|++|+|++| .|++.++..++..-..+++|++|+|++|. ||+.+...+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 468889999888888887665 46788888888888 48888877776421112468888888874 8887766543
Q ss_pred HHHhcCCCccEEEeccC-CCChhh
Q 006842 268 ELLKNNSILRVLELNNN-MIDYSG 290 (629)
Q Consensus 268 ~~l~~~~~L~~L~L~~n-~i~~~~ 290 (629)
.+++|++|+|+++ .|++.+
T Consensus 137 ----~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 ----HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ----GCTTCCEEEEESCTTCCCHH
T ss_pred ----cCCCCCEEECCCCCCCCchH
Confidence 4577888888877 477654
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.78 E-value=2.4e-10 Score=103.83 Aligned_cols=105 Identities=17% Similarity=0.012 Sum_probs=62.7
Q ss_pred cEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhh
Q 006842 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFF 525 (629)
Q Consensus 446 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~ 525 (629)
+.+++++|.++..... ..++|++|+|++|.|+...+..|.. +++|++|+|++|+|++. .
T Consensus 15 ~~l~~~~n~l~~iP~~-------~~~~L~~L~Ls~N~l~~~~~~~~~~----l~~L~~L~Ls~N~l~~i----------~ 73 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-------IPTDKQRLWLNNNQITKLEPGVFDH----LVNLQQLYFNSNKLTAI----------P 73 (174)
T ss_dssp SEEECCSSCCSSCCSC-------CCTTCSEEECCSSCCCCCCTTTTTT----CTTCCEEECCSSCCCCC----------C
T ss_pred cEEEeCCCCCCccCCC-------cCCCCcEEEeCCCCccccCHHHhcC----CcCCCEEECCCCCCCcc----------C
Confidence 5777887777643211 1256777777777776654433333 37777777777777765 3
Q ss_pred hHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCc
Q 006842 526 HSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRD 574 (629)
Q Consensus 526 ~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~ 574 (629)
+..|..+++|+.|+|++|+|+++. .......++|++|+|++|.+..
T Consensus 74 ~~~~~~l~~L~~L~L~~N~l~~l~---~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 74 TGVFDKLTQLTQLDLNDNHLKSIP---RGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCSEEECCSSCBCT
T ss_pred hhHhCCcchhhEEECCCCccceeC---HHHhccccCCCEEEeCCCCccc
Confidence 344566666777777777666532 2211122566667777766654
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.76 E-value=1.5e-09 Score=98.60 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=43.7
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHh
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 439 (629)
+|++|+|++|.|+.. .+..|..+++|++|+|++|+|+.. ....|..+++|++|+|++|+|+.. ....+
T Consensus 34 ~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~i----~~~~~~~l~~L~~L~L~~N~l~~l----~~~~~ 101 (174)
T 2r9u_A 34 DKQRLWLNNNQITKL----EPGVFDHLVNLQQLYFNSNKLTAI----PTGVFDKLTQLTQLDLNDNHLKSI----PRGAF 101 (174)
T ss_dssp TCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTT
T ss_pred CCcEEEeCCCCcccc----CHHHhcCCcCCCEEECCCCCCCcc----ChhHhCCcchhhEEECCCCcccee----CHHHh
Confidence 456666666665553 234455556666666666665542 112234455555666665555542 11224
Q ss_pred hcCCcccEEECcCCCCC
Q 006842 440 KDNSVITSLDLAYNPIG 456 (629)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~ 456 (629)
..+++|++|+|++|++.
T Consensus 102 ~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCSEEECCSSCBC
T ss_pred ccccCCCEEEeCCCCcc
Confidence 44455555555555554
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.70 E-value=1.4e-10 Score=120.08 Aligned_cols=124 Identities=13% Similarity=0.157 Sum_probs=55.5
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHH
Q 006842 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE 296 (629)
Q Consensus 217 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 296 (629)
+..++.+.+..+ ++..+. ..+.. ++|+.+.+..+ ++..+..+|. + .+|+.+++.. .+...+ ..
T Consensus 112 ~~~l~~i~ip~~-i~~I~~----~aF~~-~~L~~i~l~~~-i~~I~~~aF~----~-~~L~~i~lp~-~l~~I~----~~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPK----DAFRN-SQIAKVVLNEG-LKSIGDMAFF----N-STVQEIVFPS-TLEQLK----ED 174 (401)
T ss_dssp CSSCSEEECCTT-CCEECT----TTTTT-CCCSEEECCTT-CCEECTTTTT----T-CCCCEEECCT-TCCEEC----SS
T ss_pred cCCccEEEECCc-cCEehH----hhccc-CCccEEEeCCC-ccEECHHhcC----C-CCceEEEeCC-CccEeh----HH
Confidence 345666666542 332221 12222 35777776654 4443332222 2 2466666654 332111 12
Q ss_pred HHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccC
Q 006842 297 ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368 (629)
Q Consensus 297 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 368 (629)
+|..|.+|+.+++..|.++.++.. +|. +.+|+++.+..+ ++. +....+..+.+|+.+++..
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~----aF~-~~~L~~l~lp~~-l~~-----I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPAS----TFV-YAGIEEVLLPVT-LKE-----IGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTT----TTT-TCCCSEEECCTT-CCE-----ECTTTTTTCTTCCCEECCT
T ss_pred HhhCcccCCeeecCCCcceEechh----hEe-ecccCEEEeCCc-hhe-----ehhhHhhCCCCCCEEecCC
Confidence 334455666666655555555432 222 345555555432 332 2222223444555555554
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=9.3e-11 Score=121.50 Aligned_cols=267 Identities=12% Similarity=0.086 Sum_probs=158.4
Q ss_pred CCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHH
Q 006842 273 NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS 352 (629)
Q Consensus 273 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 352 (629)
+..++.+.+.++ ++..+ ..+|.+ .+|+.+.+..+ ++.++. .+|.++ +|+++.+.. .+.. +..
T Consensus 112 ~~~l~~i~ip~~-i~~I~----~~aF~~-~~L~~i~l~~~-i~~I~~----~aF~~~-~L~~i~lp~-~l~~-----I~~ 173 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIP----KDAFRN-SQIAKVVLNEG-LKSIGD----MAFFNS-TVQEIVFPS-TLEQ-----LKE 173 (401)
T ss_dssp CSSCSEEECCTT-CCEEC----TTTTTT-CCCSEEECCTT-CCEECT----TTTTTC-CCCEEECCT-TCCE-----ECS
T ss_pred cCCccEEEECCc-cCEeh----Hhhccc-CCccEEEeCCC-ccEECH----HhcCCC-CceEEEeCC-CccE-----ehH
Confidence 356777777653 32221 223334 47888888766 666655 345554 688888875 4444 333
Q ss_pred hhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHH
Q 006842 353 GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA 432 (629)
Q Consensus 353 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 432 (629)
..+..+.+|+.+++.+|.++..+. .+|. +.+|+++.+..+ +... -..+|..+++|+.+++..+ ++..+.
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~----~aF~-~~~L~~l~lp~~-l~~I----~~~aF~~~~~L~~l~l~~~-l~~I~~ 242 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPA----STFV-YAGIEEVLLPVT-LKEI----GSQAFLKTSQLKTIEIPEN-VSTIGQ 242 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECT----TTTT-TCCCSEEECCTT-CCEE----CTTTTTTCTTCCCEECCTT-CCEECT
T ss_pred HHhhCcccCCeeecCCCcceEech----hhEe-ecccCEEEeCCc-hhee----hhhHhhCCCCCCEEecCCC-ccCccc
Confidence 334567788888888888877532 2233 578888888755 4332 1235667788888888765 443322
Q ss_pred HHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCC-----HHHHHHHHHHHhcCCCcCEEEcc
Q 006842 433 SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG-----ASGAEFVADMLRYNNTISILDLR 507 (629)
Q Consensus 433 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~-----~~~~~~l~~~l~~~~~L~~L~Ls 507 (629)
. ++.. .+|+.+++. +.+...+..+ +..|++|+.+++.++.+. ..+.. ++..|++|+.++|.
T Consensus 243 ~----aF~~-~~L~~i~lp-~~i~~I~~~a----F~~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 243 E----AFRE-SGITTVKLP-NGVTNIASRA----FYYCPELAEVTTYGSTFNDDPEAMIHPY----CLEGCPKLARFEIP 308 (401)
T ss_dssp T----TTTT-CCCSEEEEE-TTCCEECTTT----TTTCTTCCEEEEESSCCCCCTTCEECTT----TTTTCTTCCEECCC
T ss_pred c----cccc-CCccEEEeC-CCccEEChhH----hhCCCCCCEEEeCCccccCCcccEECHH----HhhCCccCCeEEeC
Confidence 2 2333 578888884 3444433333 355678888888777654 22222 33455888888887
Q ss_pred cCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCCchhHHHHHHHHhcC
Q 006842 508 ANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKAN 587 (629)
Q Consensus 508 ~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 587 (629)
+ .+... -...|.+|++|+.++|..| ++.+ ....+..+ +|+.+++++|.+.......+...
T Consensus 309 ~-~i~~I----------~~~aF~~c~~L~~l~lp~~-l~~I---~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~---- 368 (401)
T 4fdw_A 309 E-SIRIL----------GQGLLGGNRKVTQLTIPAN-VTQI---NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF---- 368 (401)
T ss_dssp T-TCCEE----------CTTTTTTCCSCCEEEECTT-CCEE---CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS----
T ss_pred C-ceEEE----------hhhhhcCCCCccEEEECcc-ccEE---cHHhCCCC-CCCEEEEcCCCCcccccccccCC----
Confidence 4 46555 4567778888888888554 4432 22222233 78888888887766443333211
Q ss_pred CccceeeeeccCCccc
Q 006842 588 EDVAVTSLNLANNFLT 603 (629)
Q Consensus 588 ~~~~L~~L~L~~N~i~ 603 (629)
+ .+++.|++..+.+.
T Consensus 369 ~-~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 369 P-DDITVIRVPAESVE 383 (401)
T ss_dssp C-TTCCEEEECGGGHH
T ss_pred C-CCccEEEeCHHHHH
Confidence 1 25677777776544
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.43 E-value=5.8e-10 Score=115.83 Aligned_cols=310 Identities=13% Similarity=0.111 Sum_probs=170.1
Q ss_pred HHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHH
Q 006842 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (629)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (629)
+.++.+|++++|..+ ++..+ ..+|..|.+|++++|..+ ++.++..+ +..|.+|+.+.+..+ +...+..
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~----~~aF~~c~~L~~i~lp~~-l~~I~~~a----F~~c~~L~~i~~p~~-l~~i~~~- 134 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIG----EFAFENCSKLEIINIPDS-VKMIGRCT----FSGCYALKSILLPLM-LKSIGVE- 134 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEEC----TTTTTTCTTCCEECCCTT-CCEECTTT----TTTCTTCCCCCCCTT-CCEECTT-
T ss_pred hhCCCCceEEEeCCC-ccCcc----hhHhhCCCCCcEEEeCCC-ceEccchh----hcccccchhhcccCc-eeeecce-
Confidence 346788888888643 44332 245777888888888654 44443333 346677777776644 2222211
Q ss_pred HHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChh
Q 006842 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (629)
Q Consensus 238 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 317 (629)
.+..+. +....+... +...+. ..+..|++|+.+.+..+.. ..+ ..++..+.+|+.+.+..+ ++.+
T Consensus 135 ---aF~~~~-~~~~~~~~~-~~~i~~----~aF~~c~~L~~i~l~~~~~-~I~----~~~F~~c~~L~~i~l~~~-~~~I 199 (394)
T 4fs7_A 135 ---AFKGCD-FKEITIPEG-VTVIGD----EAFATCESLEYVSLPDSME-TLH----NGLFSGCGKLKSIKLPRN-LKII 199 (394)
T ss_dssp ---TTTTCC-CSEEECCTT-CCEECT----TTTTTCTTCCEEECCTTCC-EEC----TTTTTTCTTCCBCCCCTT-CCEE
T ss_pred ---eeeccc-ccccccCcc-ccccch----hhhcccCCCcEEecCCccc-eec----cccccCCCCceEEEcCCC-ceEe
Confidence 122222 333332221 222111 2355667888888865522 111 234456778888887665 4444
Q ss_pred hHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCC
Q 006842 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (629)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (629)
+. .++..+..|+.+.+..+...-. ... .....|+.+.+... ++..+ ...+..+..|+.+.+..+
T Consensus 200 ~~----~~F~~~~~L~~i~~~~~~~~i~------~~~-~~~~~l~~i~ip~~-~~~i~----~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 200 RD----YCFAECILLENMEFPNSLYYLG------DFA-LSKTGVKNIIIPDS-FTELG----KSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CT----TTTTTCTTCCBCCCCTTCCEEC------TTT-TTTCCCCEEEECTT-CCEEC----SSTTTTCSSCCEEEECCT
T ss_pred Cc----hhhccccccceeecCCCceEee------hhh-cccCCCceEEECCC-ceecc----cccccccccceeEEcCCC
Confidence 33 3466777787777765532210 111 13346777777643 22221 123567777888877765
Q ss_pred CCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEe
Q 006842 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK 477 (629)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~ 477 (629)
...- -...+..+..++.+....+.+.+ ..+..|.+|+.+.+..+ +...+.. .+..|.+|+.++
T Consensus 264 ~~~i-----~~~~F~~~~~l~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~ 326 (394)
T 4fs7_A 264 KLRI-----GGSLFYNCSGLKKVIYGSVIVPE-------KTFYGCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSID 326 (394)
T ss_dssp TCEE-----CSCTTTTCTTCCEEEECSSEECT-------TTTTTCTTCCEEEECTT-CCEECTT----TTTTCTTCCEEC
T ss_pred ccee-----eccccccccccceeccCceeecc-------ccccccccccccccccc-cceechh----hhcCCCCCCEEE
Confidence 3221 11245566777777777665544 23556777888877654 4333322 234567788777
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCCCccccccCCCchhhhHHHHhhhhhhhhhhhhh
Q 006842 478 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEVCSGCNGLSFFHSAIYSLKHMLFYSLCIN 543 (629)
Q Consensus 478 L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N 543 (629)
|..+ ++..+...| ..|++|+.+++..+ +... -..+|.++++|+.+++..+
T Consensus 327 lp~~-v~~I~~~aF----~~c~~L~~i~lp~~-l~~I----------~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 327 LPYL-VEEIGKRSF----RGCTSLSNINFPLS-LRKI----------GANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCTT-CCEECTTTT----TTCTTCCEECCCTT-CCEE----------CTTTBTTCTTCCEEEEEGG
T ss_pred eCCc-ccEEhHHhc----cCCCCCCEEEECcc-ccEe----------hHHHhhCCCCCCEEEECCC
Confidence 7543 544444333 34577888877665 5444 3456667777777766544
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=1.4e-09 Score=112.99 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=63.9
Q ss_pred HhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHHHhhCCCCCEEEeeccCCChHHHH
Q 006842 185 SLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 264 (629)
Q Consensus 185 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 264 (629)
+|..|.+|+++.|..+ ++.++-.+ +.+|++|+.+++..+ ++..+ ...+..+..|+.+.+..+ +...+..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~a----F~~c~~L~~i~lp~~-l~~I~----~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFA----FENCSKLEIINIPDS-VKMIG----RCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTT----TTTCTTCCEECCCTT-CCEEC----TTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred HhhCCCCceEEEeCCC-ccCcchhH----hhCCCCCcEEEeCCC-ceEcc----chhhcccccchhhcccCc-eeeecce
Confidence 4667788888888643 55554433 356778888888654 33322 123445567776665533 3322221
Q ss_pred HHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCC
Q 006842 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN 340 (629)
Q Consensus 265 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 340 (629)
+ +..+..++........ ..+ ..+|..+.+|+.+.+..+. ..++. .+|.++.+|+.+++..+
T Consensus 135 a----F~~~~~~~~~~~~~~~--~i~----~~aF~~c~~L~~i~l~~~~-~~I~~----~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 135 A----FKGCDFKEITIPEGVT--VIG----DEAFATCESLEYVSLPDSM-ETLHN----GLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp T----TTTCCCSEEECCTTCC--EEC----TTTTTTCTTCCEEECCTTC-CEECT----TTTTTCTTCCBCCCCTT
T ss_pred e----eecccccccccCcccc--ccc----hhhhcccCCCcEEecCCcc-ceecc----ccccCCCCceEEEcCCC
Confidence 1 1222222222211111 111 1234456667766665432 22222 24556666666666544
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.28 E-value=3.3e-07 Score=93.18 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=19.7
Q ss_pred HhhcCCccEEeccC-CCCChhhHHHHHHHhcCCCCccEEEccCCCCCh
Q 006842 298 LLENSTIRSLHLNG-NYGGALGANALAKGLEGNKSLRELHLHGNSIGD 344 (629)
Q Consensus 298 l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 344 (629)
+..+++|++|+|++ |.++.+.. ..|..+++|++|+|++|.|+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~----~~~~~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL----RDLRGLGELRNLTIVKSGLRF 70 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG----GGSCSCCCCSEEECCSSCCCE
T ss_pred CCCCCCeeEEEccCCCCCCCcCh----hHhccccCCCEEECCCCccce
Confidence 44444455555553 44444432 223444445555555554444
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.27 E-value=1.9e-07 Score=94.88 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=64.5
Q ss_pred CEEEeecc-CCChHHHHHHHHHHhcCCCccEEEecc-CCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHh
Q 006842 249 ERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNN-NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326 (629)
Q Consensus 249 ~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 326 (629)
..++++++ +++. ++. +..+++|++|+|++ |.|+... +..|..+++|+.|+|++|.|+.+.. ..|
T Consensus 11 ~~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~~----~~~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHLE----LRDLRGLGELRNLTIVKSGLRFVAP----DAF 76 (347)
T ss_dssp SCEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEEC----GGGSCSCCCCSEEECCSSCCCEECT----TGG
T ss_pred CEEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCcC----hhHhccccCCCEEECCCCccceeCH----HHh
Confidence 34566666 6665 444 56666777777775 7775321 2345567777777777777766553 345
Q ss_pred cCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCc
Q 006842 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA 373 (629)
Q Consensus 327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 373 (629)
.++++|++|+|++|.|+. ++...+..+. |+.|+|.+|.+.-
T Consensus 77 ~~l~~L~~L~l~~N~l~~-----~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALES-----LSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp GSCSCCCEEECCSSCCSC-----CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cCCcCCCEEeCCCCccce-----eCHHHcccCC-ceEEEeeCCCccC
Confidence 667777777777777765 2222223332 7777777776653
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=2.6e-06 Score=81.96 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=38.7
Q ss_pred CCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCC--CccEEEeeCCCCCHH---HH
Q 006842 358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNR--TITTIDLGGNNIHSK---GA 432 (629)
Q Consensus 358 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~--~L~~L~Ls~n~i~~~---~~ 432 (629)
+++|+.|+|++|+|+.... ++..+..+++|+.|+|++|.|++. ..+..+. +|++|+|++|.+... ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~--l~~~~~~l~~L~~L~Ls~N~i~~~------~~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSE------RELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp CTTCCEEECTTSCCCCCGG--GTTHHHHSTTCCEEECTTSCCCSG------GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred CCCCCEEECCCCCCCCCcc--chhHHhhCCCCCEEECCCCccCCc------hhhhhcccCCcceEEccCCcCccccCcch
Confidence 3445555555555544210 223344556666666666666553 1112222 555666666655431 11
Q ss_pred HHHHHHhhcCCcccEEE
Q 006842 433 SAIARVLKDNSVITSLD 449 (629)
Q Consensus 433 ~~l~~~l~~~~~L~~L~ 449 (629)
.+....+..+|+|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 22223344455555554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=1e-05 Score=77.77 Aligned_cols=14 Identities=29% Similarity=0.219 Sum_probs=9.1
Q ss_pred ccceeecCCCCCCc
Q 006842 561 ALTSIDLAFNEIRD 574 (629)
Q Consensus 561 ~L~~LdLs~N~i~~ 574 (629)
+|++|+|++|.+.+
T Consensus 221 ~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 221 KLEELWLDGNSLCD 234 (267)
T ss_dssp CCSEEECTTSTTGG
T ss_pred CcceEEccCCcCcc
Confidence 56666666666654
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.87 E-value=2.5e-07 Score=95.89 Aligned_cols=130 Identities=12% Similarity=0.209 Sum_probs=65.5
Q ss_pred HhccCC-CccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCC---CChhHHHHHHHHHhhCCCCCEEEeeccCCCh
Q 006842 185 SLGYNQ-TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP---IGDEGVKCLCDILVDNAGVERLQLSSVDLRD 260 (629)
Q Consensus 185 ~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 260 (629)
+|..|. .|+++.+..+ ++.++-.+| .+|.+|+.+.+..|. ++..+. .++..|.+|+.+.+..+ ++.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF----~~C~~L~~i~~~~n~p~~l~~Ig~----~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAF----YNCTSLKRVTIQDNKPSCVKKIGR----QAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTT----TTCTTCCEEEEGGGCCCCCCEECT----TTTTTCTTCCBCGGGTT-CSE
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHh----hCCccCceEeecCCCCCeeeEech----hhchhcccceeeccCCc-cce
Confidence 355554 5888888654 555554444 567788888887652 443321 23344566666655433 332
Q ss_pred HHHHHHHHHHhcCCCccEEEeccCCCChhhHHHHHHHHhhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccC
Q 006842 261 EGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339 (629)
Q Consensus 261 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 339 (629)
.+. ..+..+.+|+.+.+..+. ...+ ..++..+..|+.+.+..+ ++.++. .+|. ...|+.+.+..
T Consensus 128 I~~----~aF~~c~~L~~i~lp~~~-~~I~----~~~F~~c~~L~~i~~~~~-~~~I~~----~aF~-~~~l~~i~ip~ 191 (394)
T 4gt6_A 128 IDS----EAFHHCEELDTVTIPEGV-TSVA----DGMFSYCYSLHTVTLPDS-VTAIEE----RAFT-GTALTQIHIPA 191 (394)
T ss_dssp ECT----TTTTTCTTCCEEECCTTC-CEEC----TTTTTTCTTCCEEECCTT-CCEECT----TTTT-TCCCSEEEECT
T ss_pred ehh----hhhhhhccccccccccee-eeec----ccceecccccccccccce-eeEecc----cccc-ccceeEEEECC
Confidence 211 123445667766665431 1111 122334566666666543 333332 1222 24566666544
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.74 E-value=2.3e-06 Score=88.52 Aligned_cols=129 Identities=10% Similarity=0.137 Sum_probs=68.4
Q ss_pred cCCCCceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHH
Q 006842 356 SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI 435 (629)
Q Consensus 356 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 435 (629)
..+..|+.+.+..+.. ..+ ..+|..+.+|+.+.+..+ ++.. -..+|..|.+|+.+++..+ ++..+
T Consensus 262 ~~c~~L~~i~lp~~~~-~I~----~~aF~~c~~L~~i~l~~~-i~~I----~~~aF~~c~~L~~i~lp~~-v~~I~---- 326 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVV-SIG----TGAFMNCPALQDIEFSSR-ITEL----PESVFAGCISLKSIDIPEG-ITQIL---- 326 (394)
T ss_dssp TTCSSCCEEECCTTCC-EEC----TTTTTTCTTCCEEECCTT-CCEE----CTTTTTTCTTCCEEECCTT-CCEEC----
T ss_pred eecccccEEecccccc-eec----CcccccccccccccCCCc-cccc----CceeecCCCCcCEEEeCCc-ccEeh----
Confidence 4556777777765432 221 134567777888877543 2221 1135666778888887654 33321
Q ss_pred HHHhhcCCcccEEECcCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCHHHHHHHHHHHhcCCCcCEEEcccCCC
Q 006842 436 ARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (629)
Q Consensus 436 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~l 511 (629)
..++.+|.+|+.+.|..+ ++..+.. .+..|.+|+.+++.++.. ....+..|.+|+.+.+..|.+
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~I~~~----aF~~C~~L~~i~~~~~~~-------~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTKIPES----AFSNCTALNNIEYSGSRS-------QWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCBCCGG----GGTTCTTCCEEEESSCHH-------HHHTCBCCCCC----------
T ss_pred HhHhhCCCCCCEEEECcc-cCEEhHh----HhhCCCCCCEEEECCcee-------ehhhhhccCCCCEEEeCCCCE
Confidence 134667788888887644 4433332 345667888888877642 113445567788887776644
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.38 E-value=0.0061 Score=51.46 Aligned_cols=68 Identities=21% Similarity=0.118 Sum_probs=35.3
Q ss_pred CEEEcccCCCC--ccccccCCCchhhhHHHHhhhhhhhhhhhhhcchhhHHHHHHHhhhhcccceeecCCCCCC-chhHH
Q 006842 502 SILDLRANGLR--DEVCSGCNGLSFFHSAIYSLKHMLFYSLCINYLQGAKCLAQSFKVVNEALTSIDLAFNEIR-DDGAF 578 (629)
Q Consensus 502 ~~L~Ls~N~l~--~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~LdLs~N~i~-~~~~~ 578 (629)
..++.++++++ .. | ..+ -++|+.|+|++|+|+.+ +...+...++|+.|+|++|.+. +-...
T Consensus 11 ~~v~Cs~~~L~~~~v-P----------~~l--p~~l~~L~Ls~N~l~~l---~~~~f~~l~~L~~L~L~~NP~~CdC~l~ 74 (130)
T 3rfe_A 11 TLVDCGRRGLTWASL-P----------TAF--PVDTTELVLTGNNLTAL---PPGLLDALPALRTAHLGANPWRCDCRLV 74 (130)
T ss_dssp TEEECCSSCCCTTTS-C----------SCC--CTTCSEEECTTSCCSSC---CTTTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred CEEEeCCCCCccccC-C----------CCC--CcCCCEEECCCCcCCcc---ChhhhhhccccCEEEecCCCeeccCccH
Confidence 36777777776 33 2 111 12466677777776653 2222222356677777777553 22334
Q ss_pred HHHHHHh
Q 006842 579 AIAQALK 585 (629)
Q Consensus 579 ~l~~~l~ 585 (629)
.+..++.
T Consensus 75 ~l~~wl~ 81 (130)
T 3rfe_A 75 PLRAWLA 81 (130)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.65 E-value=0.031 Score=56.79 Aligned_cols=135 Identities=13% Similarity=0.157 Sum_probs=83.7
Q ss_pred hhcCCccEEeccCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHH
Q 006842 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (629)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (629)
..+..|+.+.+..+ +..++. .++..+..|+.+.+..+ ++. +....+..+.+|+.+.+..+ +...+
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~----~~f~~~~~L~~i~lp~~-v~~-----I~~~aF~~~~~l~~i~l~~~-i~~i~--- 278 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGD----GAFYGMKALDEIAIPKN-VTS-----IGSFLLQNCTALKTLNFYAK-VKTVP--- 278 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECT----TTTTTCSSCCEEEECTT-CCE-----ECTTTTTTCTTCCEEEECCC-CSEEC---
T ss_pred ccccccceeeeccc-eeEEcc----ccccCCccceEEEcCCC-ccE-----eCccccceeehhcccccccc-ceecc---
Confidence 34677777777554 333333 34567788888888654 333 22233356667888888654 44431
Q ss_pred HHHHHHcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChh
Q 006842 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (629)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (629)
..+|..|.+|+.+.+.++.++.. -..+|.+|.+|+.+.|..+ ++..+. .++.+|.+|+.+.+..+ ++..
T Consensus 279 -~~aF~~c~~L~~i~l~~~~i~~I----~~~aF~~c~~L~~i~lp~~-l~~I~~----~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 279 -YLLCSGCSNLTKVVMDNSAIETL----EPRVFMDCVKLSSVTLPTA-LKTIQV----YAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp -TTTTTTCTTCCEEEECCTTCCEE----CTTTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCCCCCCTT-CCEE
T ss_pred -cccccccccccccccccccccee----hhhhhcCCCCCCEEEcCcc-ccEEHH----HHhhCCCCCCEEEECCc-cCEE
Confidence 23467888888888887766543 1236777888888888754 443321 35677888888888654 4433
Q ss_pred H
Q 006842 459 G 459 (629)
Q Consensus 459 ~ 459 (629)
+
T Consensus 348 ~ 348 (379)
T 4h09_A 348 E 348 (379)
T ss_dssp C
T ss_pred c
Confidence 3
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.97 E-value=0.029 Score=57.09 Aligned_cols=280 Identities=15% Similarity=0.196 Sum_probs=155.6
Q ss_pred HHhcCCccEEEccCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHH
Q 006842 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (629)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 237 (629)
+..|.+|++++|..+ ++..+ ..+|..| +|+++.+..+ ++..+..+| ...+|+.+++..+- ...+
T Consensus 65 F~~C~~L~~I~lp~~-v~~Ig----~~aF~~c-~l~~i~~~~~-l~~I~~~aF-----~~~~L~~i~lp~~~-~~i~--- 128 (379)
T 4h09_A 65 FNSCYNMTKVTVAST-VTSIG----DGAFADT-KLQSYTGMER-VKKFGDYVF-----QGTDLDDFEFPGAT-TEIG--- 128 (379)
T ss_dssp TTTCTTCCEEEECTT-CCEEC----TTTTTTC-CCCEEEECTT-CCEECTTTT-----TTCCCSEEECCTTC-CEEC---
T ss_pred hhCCCCCCEEEeCCc-ceEec----hhhhcCC-CCceEECCce-eeEecccee-----ccCCcccccCCCcc-cccc---
Confidence 346777888887644 33322 1234444 5777766543 443333333 22368888886542 2221
Q ss_pred HHHHHhhCCCCCEEEeeccCCChHHHHHHHHHHhcCCCccEEEeccCCCChhhH--------HHHHHHHhhcCCccEEec
Q 006842 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGF--------TSLAEALLENSTIRSLHL 309 (629)
Q Consensus 238 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--------~~l~~~l~~~~~L~~L~L 309 (629)
.......+++.+.+..+ ++..+. ..+..+..++.+.+..+....... ......+..+..+..+.+
T Consensus 129 --~~~F~~~~l~~~~~~~~-v~~i~~----~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
T 4h09_A 129 --NYIFYNSSVKRIVIPKS-VTTIKD----GIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTI 201 (379)
T ss_dssp --TTTTTTCCCCEEEECTT-CCEECS----CTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEEC
T ss_pred --ccccccceeeeeeccce-eecccc----chhcccccccccccccccceeecccceecccccceecccccccccccccc
Confidence 11112245666665543 332211 123455677777765443211000 000001122345555555
Q ss_pred cCCCCChhhHHHHHHHhcCCCCccEEEccCCCCChhHHHHHHHhhccCCCCceEEEccCCCCCchhHHHHHHHHHcCCCc
Q 006842 310 NGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389 (629)
Q Consensus 310 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L 389 (629)
.... ..... .++..+..|+.+.+..+ +.. +....+..+..|+.+.+..+ ++..+ ..++..+.+|
T Consensus 202 ~~~~-~~i~~----~~f~~~~~l~~i~~~~~-~~~-----i~~~~f~~~~~L~~i~lp~~-v~~I~----~~aF~~~~~l 265 (379)
T 4h09_A 202 PSTV-KTVTA----YGFSYGKNLKKITITSG-VTT-----LGDGAFYGMKALDEIAIPKN-VTSIG----SFLLQNCTAL 265 (379)
T ss_dssp CTTC-CEECT----TTTTTCSSCSEEECCTT-CCE-----ECTTTTTTCSSCCEEEECTT-CCEEC----TTTTTTCTTC
T ss_pred ccce-eEEee----cccccccccceeeeccc-eeE-----EccccccCCccceEEEcCCC-ccEeC----ccccceeehh
Confidence 4432 11111 34556788999988654 322 22222346678999999775 55542 2456788999
Q ss_pred cEEEccCCCCChHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHHhhcCCcccEEECcCCCCChhHHHHHHHHHhc
Q 006842 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 469 (629)
Q Consensus 390 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 469 (629)
+.+.+..+ +... -..+|..+.+|+.+.+.++.++..+. .++.+|.+|+.++|..+ ++..+..+ +..
T Consensus 266 ~~i~l~~~-i~~i----~~~aF~~c~~L~~i~l~~~~i~~I~~----~aF~~c~~L~~i~lp~~-l~~I~~~a----F~~ 331 (379)
T 4h09_A 266 KTLNFYAK-VKTV----PYLLCSGCSNLTKVVMDNSAIETLEP----RVFMDCVKLSSVTLPTA-LKTIQVYA----FKN 331 (379)
T ss_dssp CEEEECCC-CSEE----CTTTTTTCTTCCEEEECCTTCCEECT----TTTTTCTTCCEEECCTT-CCEECTTT----TTT
T ss_pred cccccccc-ceec----cccccccccccccccccccccceehh----hhhcCCCCCCEEEcCcc-ccEEHHHH----hhC
Confidence 99999765 3322 11357789999999999888776432 45778899999999765 55444333 466
Q ss_pred CCCccEEeccCCCCCHHHHHHH
Q 006842 470 HGNINTLKLGWCQIGASGAEFV 491 (629)
Q Consensus 470 ~~~L~~L~L~~n~i~~~~~~~l 491 (629)
|.+|+.+.+..+ ++..+...|
T Consensus 332 C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 332 CKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp CTTCCCCCCCTT-CCEECTTTT
T ss_pred CCCCCEEEECCc-cCEEchhHh
Confidence 789999999654 554444444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.81 E-value=0.068 Score=44.88 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=16.0
Q ss_pred CceEEEccCCCCCchhHHHHHHHHHcCCCccEEEccCCCC
Q 006842 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (629)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (629)
+|++|+|++|+|+.. -...|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l----~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTAL----PPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSC----CTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCcc----ChhhhhhccccCEEEecCCCe
Confidence 345555555554443 122234444445555544433
Done!