Query 006843
Match_columns 629
No_of_seqs 117 out of 270
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 15:17:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2233 Alpha-N-acetylglucosam 100.0 1E-188 3E-193 1481.3 47.7 578 1-624 87-666 (666)
2 PF05089 NAGLU: Alpha-N-acetyl 100.0 6E-134 1E-138 1048.6 18.1 305 1-313 28-332 (333)
3 PF12972 NAGLU_C: Alpha-N-acet 100.0 3E-79 6.6E-84 629.4 23.3 267 319-622 1-267 (267)
4 PF02449 Glyco_hydro_42: Beta- 92.5 0.15 3.3E-06 55.4 4.9 108 43-166 32-140 (374)
5 PF00150 Cellulase: Cellulase 92.2 0.63 1.4E-05 47.2 8.7 132 64-233 58-201 (281)
6 PF01229 Glyco_hydro_39: Glyco 69.1 4.5 9.8E-05 45.9 3.7 103 72-193 88-198 (486)
7 cd06593 GH31_xylosidase_YicI Y 66.1 69 0.0015 33.9 11.7 105 71-191 69-198 (308)
8 PF12891 Glyco_hydro_44: Glyco 64.1 3.4 7.3E-05 43.0 1.3 125 71-202 27-186 (239)
9 PF13812 PPR_3: Pentatricopept 63.3 4.4 9.5E-05 27.8 1.4 20 65-84 15-34 (34)
10 PRK00035 hemH ferrochelatase; 57.4 1.1E+02 0.0024 32.8 11.5 162 55-228 69-268 (333)
11 cd04247 AAK_AK-Hom3 AAK_AK-Hom 51.5 5.4 0.00012 42.9 0.3 100 68-192 176-277 (306)
12 PF02065 Melibiase: Melibiase; 51.4 36 0.00077 38.0 6.6 122 71-200 107-236 (394)
13 cd06388 PBP1_iGluR_AMPA_GluR4 46.1 53 0.0011 35.8 6.9 92 68-187 189-287 (371)
14 cd06394 PBP1_iGluR_Kainate_KA1 42.4 49 0.0011 35.8 5.9 67 68-149 197-268 (333)
15 COG1422 Predicted membrane pro 42.0 84 0.0018 32.1 7.0 64 438-501 66-130 (201)
16 PF05119 Terminase_4: Phage te 41.5 29 0.00062 30.3 3.3 30 56-85 56-85 (100)
17 cd04244 AAK_AK-LysC-like AAK_A 40.6 14 0.0003 39.5 1.3 102 65-192 169-271 (298)
18 PF08671 SinI: Anti-repressor 37.7 18 0.00039 26.0 1.1 15 24-38 13-27 (30)
19 PF03705 CheR_N: CheR methyltr 37.1 27 0.00058 27.4 2.2 20 65-84 24-43 (57)
20 cd04257 AAK_AK-HSDH AAK_AK-HSD 35.2 20 0.00043 38.3 1.4 67 71-161 170-236 (294)
21 cd06592 GH31_glucosidase_KIAA1 34.9 2.2E+02 0.0047 30.3 9.2 83 70-164 72-166 (303)
22 cd03198 GST_C_CLIC GST_C famil 34.7 99 0.0022 29.4 5.9 43 449-491 5-47 (134)
23 COG0276 HemH Protoheme ferro-l 34.4 6.6E+02 0.014 27.6 13.1 156 56-229 69-264 (320)
24 PF09278 MerR-DNA-bind: MerR, 31.8 40 0.00087 27.1 2.4 18 20-37 7-24 (65)
25 PRK15014 6-phospho-beta-glucos 31.3 93 0.002 35.6 6.1 70 68-164 110-179 (477)
26 cd06389 PBP1_iGluR_AMPA_GluR2 31.1 1.4E+02 0.003 32.4 7.2 59 68-141 187-250 (370)
27 PF07328 VirD1: T-DNA border e 28.2 2.1E+02 0.0046 27.6 6.7 53 437-491 73-128 (147)
28 PF10629 DUF2475: Protein of u 26.8 29 0.00064 29.6 0.8 12 85-96 4-15 (71)
29 cd04258 AAK_AKiii-LysC-EC AAK_ 26.4 31 0.00066 36.9 1.1 95 72-191 167-264 (292)
30 cd08777 Death_RIP1 Death Domai 26.4 51 0.0011 28.9 2.3 22 17-38 14-35 (86)
31 cd04243 AAK_AK-HSDH-like AAK_A 26.0 34 0.00074 36.5 1.3 67 71-161 169-235 (293)
32 PRK08210 aspartate kinase I; R 25.8 26 0.00056 38.7 0.4 67 70-160 122-188 (403)
33 cd06565 GH20_GcnA-like Glycosy 25.7 8.3E+02 0.018 26.0 12.4 205 55-292 54-275 (301)
34 PF13410 GST_C_2: Glutathione 24.9 1E+02 0.0022 24.5 3.7 28 470-498 3-30 (69)
35 TIGR00825 EIIBC-GUT PTS system 24.7 19 0.00041 38.6 -0.9 42 52-94 10-58 (331)
36 PRK11546 zraP zinc resistance 24.2 1.3E+02 0.0027 29.3 4.6 43 34-77 17-63 (143)
37 COG5005 Mu-like prophage prote 24.1 21 0.00044 34.0 -0.6 41 223-263 62-104 (140)
38 cd06594 GH31_glucosidase_YihQ 24.0 4E+02 0.0087 28.6 9.1 105 71-190 74-204 (317)
39 cd06380 PBP1_iGluR_AMPA N-term 23.8 2.7E+02 0.0058 29.8 7.7 17 68-84 194-210 (382)
40 PF00232 Glyco_hydro_1: Glycos 23.4 2.4E+02 0.0052 31.8 7.5 34 66-99 97-130 (455)
41 smart00633 Glyco_10 Glycosyl h 23.0 2.4E+02 0.0053 29.0 6.9 98 71-198 19-125 (254)
42 TIGR00656 asp_kin_monofn aspar 21.4 42 0.00092 36.9 1.0 97 72-193 120-217 (401)
43 TIGR03356 BGL beta-galactosida 21.1 5.1E+02 0.011 29.1 9.4 100 65-192 91-210 (427)
44 cd03201 GST_C_DHAR GST_C famil 21.0 2.7E+02 0.0058 25.4 6.1 48 449-498 8-55 (121)
45 TIGR00676 fadh2 5,10-methylene 20.9 98 0.0021 32.5 3.6 24 73-96 175-199 (272)
46 TIGR00657 asp_kinases aspartat 20.4 50 0.0011 36.9 1.3 99 69-192 156-255 (441)
47 PF12876 Cellulase-like: Sugar 20.2 1.5E+02 0.0032 25.6 3.9 53 146-199 2-64 (88)
48 TIGR00756 PPR pentatricopeptid 20.1 67 0.0014 21.3 1.5 19 66-84 15-33 (35)
No 1
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-188 Score=1481.33 Aligned_cols=578 Identities=49% Similarity=0.913 Sum_probs=559.4
Q ss_pred CCCCCCCccccccchHHHHHHHHHHcCCCHHHHhhhccCchhhhHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 006843 1 MALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLEL 80 (629)
Q Consensus 1 MALnGiNmpLa~~GqEaVw~~v~~~lG~t~~ei~~ff~GPA~laW~rMgNi~gwgGPLp~~wi~~q~~LqkkIl~RmreL 80 (629)
|||||||++||++|||+||++||+.||++.+||++||+|||||||+|||||++||||||++|+..|..|||||++|||+|
T Consensus 87 mALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~LqkrIidrm~~l 166 (666)
T KOG2233|consen 87 MALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQKRIIDRMLEL 166 (666)
T ss_pred HHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhCCCCcccccCC
Q 006843 81 GMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDT 160 (629)
Q Consensus 81 GM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~yG~~~h~Y~~D~ 160 (629)
|||||||+|+||||++++++||++++++++.|+.|+.. |||.++|.|+||||.+||.+|+++|+|+||.++|+|+|||
T Consensus 167 GmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~--~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~tniy~~Dp 244 (666)
T KOG2233|consen 167 GMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSR--YSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGVTNIYSADP 244 (666)
T ss_pred CCCccchhhccccHHHHHHhCchhceeeccccCCCCcc--eeeeEEccCCcchHHHHHHHHHHHHHHHhCCcccccccCc
Confidence 99999999999999999999999999999999999976 9999999999999999999999999999997799999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHccCCCceEEEecccCCCCCCCCCchhHHHhhcCCCCCCEEEEecCCCccccccc
Q 006843 161 FNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRT 240 (629)
Q Consensus 161 FnE~~pp~~d~~~L~~~~~~i~~am~~~dP~AvWvmQgW~F~~~~~fW~~~~~~a~L~~Vp~~~mliLDL~sE~~p~W~~ 240 (629)
|||+.||+++|+|+++.+.+||+||+++||+||||||||+|.+|+ ||++++++|||++||.|+||||||++|..|+|++
T Consensus 245 FNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQgWlF~~d~-FW~~~~ikafL~avP~GrllVLDLyaEv~P~~~~ 323 (666)
T KOG2233|consen 245 FNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQGWLFTYDP-FWPPWQIKAFLSAVPRGRLLVLDLYAEVVPAWQM 323 (666)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeecceeecCC-CCChHHHHHHHhcCCcCcEEEEehhhhhhhHHHh
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCCCCCCceeeeccCCCCccccccchhhhhcChhhhhhcCCCceEEEeeCccccccChhHHHHHHhhccCCCCCCHHHH
Q 006843 241 SSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEW 320 (629)
Q Consensus 241 ~~~f~G~pwIWc~L~NFGG~~gl~G~l~~i~~~~~~a~~~~~~~m~GiG~tpEGi~~NpvvYeL~~d~aW~~~~id~~~W 320 (629)
|.+|+|+|||||||||||||.+|+|.++.|.++|.+|+..++|+|||+||+||||+||||||+||.|++||++++|++.|
T Consensus 324 Tasf~GqpfIWCmLHNFGGn~~lfGal~~InsG~e~Ar~~~nStlVGtGm~~EgI~QN~VvYsf~~e~~wsde~ldl~~W 403 (666)
T KOG2233|consen 324 TASFQGQPFIWCMLHNFGGNRELFGALQKINSGPELARMKPNSTLVGTGMSMEGIDQNYVVYSFMIERGWSDEPLDLNNW 403 (666)
T ss_pred hhhhcCCceeEEEeeccCCcHhhhhhHHHhccCHHHHhcCCCCceeecccCccccccchhhHHHHHHhccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCChhHHHHHHHHHhcccCCCCCCCCCCCCcccccccCCCCcccCcccchhhhhhhcccCCCCccccccc
Q 006843 321 LKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEE 400 (629)
Q Consensus 321 ~~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~~~~~~s~~~~rPsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (629)
+++|++||||+.++.+++||.+|.+|||||+++...++..... --|||+.
T Consensus 404 lksys~sRY~~~~~~~eaaW~lL~~tvYn~~~~~~~~~~~~~l---~rRp~f~--------------------------- 453 (666)
T KOG2233|consen 404 LKSYSESRYGVDFKVAEAAWTLLAGTVYNCPGKWATRGFSYFL---YRRPSFQ--------------------------- 453 (666)
T ss_pred HHHHHHhhhccchHHHHHHHHHHhhhhcCCCcccccCCCceee---Eeccccc---------------------------
Confidence 9999999999999999999999999999999877766632222 2377731
Q ss_pred CCCCCCCcccCCHHHHHHHHHHHHHchhccCCC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 006843 401 NSDMPQAHLWYSNQELIKGLKLFLNAGNALAGC-ATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFL 479 (629)
Q Consensus 401 ~~~~~~~~~~Yd~~~l~~A~~~ll~~~~~l~~~-~~y~yDLvDv~RQvL~n~~~~~~~~~~~Ay~~~d~~~~~~~~~~~l 479 (629)
..+.+||+.+++..||++||.+.+.+..+ ++|||||||||||+|+..++++|.++.+||..||...+...|.+++
T Consensus 454 ----~k~~~Wyn~sev~~a~rllL~a~~~l~~e~~~fr~DlvDltRq~lqelanq~y~e~~sAflkkd~~sl~~~~~~ll 529 (666)
T KOG2233|consen 454 ----RKTEYWYNVSEVFSAWRLLLTALVHLLGEHPLFRYDLVDLTRQMLQELANQAYLEARSAFLKKDKQSLGALSEKLL 529 (666)
T ss_pred ----CCceeeecHHHHHHHHHHHHhhhhhhccCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24679999999999999999999886655 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCchHHHHHHHHhhCCCHHHHHHHHHHhhhcccccCCCCCCCCCCcccccchhcchhhhhccHHHH
Q 006843 480 QLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRA 559 (629)
Q Consensus 480 ~li~dlD~LL~t~~~flLg~Wl~~Ar~~~~~~~ek~~yE~NAR~~IT~WG~~~~~~~g~L~DYA~k~W~GL~~dyY~pRW 559 (629)
+|++|||.+|+++++|+||+||++||+.|.+.+|++.||.|||+|||+|||. |+|+|||||+||||++|||.|||
T Consensus 530 elf~dle~~lasd~nfLlg~WleqAk~~A~n~~er~~fe~nar~qlT~Wgp~-----gqilDYA~kqwaGLvsdYY~pRw 604 (666)
T KOG2233|consen 530 ELFQDLESYLASDDNFLLGQWLEQAKSAAPNSEERQVFEVNARDQLTVWGPT-----GQILDYANKQWAGLVSDYYGPRW 604 (666)
T ss_pred HHHHHHHHHHccCcchhHHHHHHHHHhhCCChhhhhhccccccceEEEECCC-----cchhhHHHHHHHHhhhhcccHHH
Confidence 9999999999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHH-HHhhhcccccccCCCCCCCCCCCCHHHHHHHHHHHhhh
Q 006843 560 STYFDYMSKSLREKSEFQVDRWRQQWV-FISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKYFG 624 (629)
Q Consensus 560 ~~f~~~l~~~l~~~~~~~~~~~~~~~~-~~E~~W~~~~~~~~~~y~~~p~gd~~~~a~~l~~ky~~ 624 (629)
+.|++.+.+++..|++|+.++|..+++ .+|.+++ .++..||++|.||++++++.|+.||++
T Consensus 605 rlf~e~il~slhd~~pFn~t~f~~~v~~~~e~~fs----~s~~vYPv~p~Gdt~~is~~if~ky~P 666 (666)
T KOG2233|consen 605 RLFLEWILESLHDGKPFNHTEFSISVFRDVERPFS----ISNIVYPVKPKGDTLAISRHIFSKYFP 666 (666)
T ss_pred HHHHHHHHHHHhcCCCccccchhhHHHHhhhcccc----ccccccccCCCccHHHHHHHHHHhcCC
Confidence 999999999999999999999999995 9999999 999999999999999999999999973
No 2
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=100.00 E-value=5.9e-134 Score=1048.64 Aligned_cols=305 Identities=61% Similarity=1.150 Sum_probs=226.7
Q ss_pred CCCCCCCccccccchHHHHHHHHHHcCCCHHHHhhhccCchhhhHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 006843 1 MALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLEL 80 (629)
Q Consensus 1 MALnGiNmpLa~~GqEaVw~~v~~~lG~t~~ei~~ff~GPA~laW~rMgNi~gwgGPLp~~wi~~q~~LqkkIl~RmreL 80 (629)
|||||||||||+||||+||+|||++||||++||++||+||||+||+|||||+|||||||++||++|++||||||+|||||
T Consensus 28 MALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq~kIl~RmreL 107 (333)
T PF05089_consen 28 MALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQKKILDRMREL 107 (333)
T ss_dssp HHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhCCCCcccccCC
Q 006843 81 GMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDT 160 (629)
Q Consensus 81 GM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~yG~~~h~Y~~D~ 160 (629)
||+||||||+||||++|++++|+|+|++++.|++|. ||++|||+||+|++||++||++|+++||+ +|||++||
T Consensus 108 Gm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~------~~~~L~P~dplF~~i~~~F~~~q~~~yG~-~~~Y~~D~ 180 (333)
T PF05089_consen 108 GMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFC------RPYFLDPTDPLFAEIAKLFYEEQIKLYGT-DHIYAADP 180 (333)
T ss_dssp T-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--------EEE-SS--HHHHHHHHHHHHHHHHH----SEEE--T
T ss_pred CCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCC------CCceeCCCCchHHHHHHHHHHHHHHhcCC-CceeCCCc
Confidence 999999999999999999999999999999999965 68999999999999999999999999997 99999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHccCCCceEEEecccCCCCCCCCCchhHHHhhcCCCCCCEEEEecCCCccccccc
Q 006843 161 FNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRT 240 (629)
Q Consensus 161 FnE~~pp~~d~~~L~~~~~~i~~am~~~dP~AvWvmQgW~F~~~~~fW~~~~~~a~L~~Vp~~~mliLDL~sE~~p~W~~ 240 (629)
|||++||+++++||+++|++||++|+++||+||||||||+|++++ ||++++++|||++||+||||||||+||..|+|++
T Consensus 181 FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQgWlF~~~~-fW~~~~~~a~L~~Vp~~~mliLDL~se~~p~w~~ 259 (333)
T PF05089_consen 181 FNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQGWLFYYDP-FWTPNPIKALLSGVPKGRMLILDLFSERFPQWKR 259 (333)
T ss_dssp TTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE---------BTTBS-HHHHTT-SGGGEEEEETTTTTS---HH
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEccccccccc-ccCcchHHHHHcCCCCCCeEEEEccccccchhcc
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCCCCCCceeeeccCCCCccccccchhhhhcChhhhhhcCCCceEEEeeCccccccChhHHHHHHhhccCCC
Q 006843 241 SSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNE 313 (629)
Q Consensus 241 ~~~f~G~pwIWc~L~NFGG~~gl~G~l~~i~~~~~~a~~~~~~~m~GiG~tpEGi~~NpvvYeL~~d~aW~~~ 313 (629)
+++|+|+|||||||||||||+||+|+++.|++++.+|+++++++|||||+|||||||||||||||+|++|+++
T Consensus 260 ~~~f~G~pwIwc~L~NFGG~~gl~G~~~~i~~~~~~a~~~~~~~m~G~G~tpEgi~~NpvvYeL~~e~aW~~~ 332 (333)
T PF05089_consen 260 TESFYGKPWIWCMLHNFGGNTGLYGNLENIASGPIEARASPNSNMVGIGLTPEGIEQNPVVYELMLEMAWRKD 332 (333)
T ss_dssp HHCTT---EEEEE---STT--SS---HHHHHHHHHHHHHT--S-EEEEEE--S-S-S-HHHHHHHHHGGG-SS
T ss_pred ccccccchhhhhcccCCCCCCCCcccHHHHHhhHHHHHHhcCCCceEEEecccccccCHHHHHHHHHhcccCC
Confidence 9999999999999999999999999999999999999999888999999999999999999999999999975
No 3
>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB, or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This C-terminal domain has an all alpha helical fold [].; PDB: 2VC9_A 2VCC_A 2VCB_A 2VCA_A 4A4A_A.
Probab=100.00 E-value=3e-79 Score=629.41 Aligned_cols=267 Identities=44% Similarity=0.785 Sum_probs=203.9
Q ss_pred HHHHHHHhcccCCCChhHHHHHHHHHhcccCCCCCCCCCCCCcccccccCCCCcccCcccchhhhhhhcccCCCCccccc
Q 006843 319 EWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLS 398 (629)
Q Consensus 319 ~W~~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~~~~~~s~~~~rPsl~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (629)
+||++|++||||+.++++.+||++|++|||++++....+ .++++++||++++.
T Consensus 1 ~Wi~~Y~~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~----~~si~~~rPsl~~~----------------------- 53 (267)
T PF12972_consen 1 EWIKDYATRRYGKYDPEAREAWQILLRTVYNNTGGQYGR----GESIFCARPSLNGN----------------------- 53 (267)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHTTTS---S---S----S--GGGS-S-SS-------------------------
T ss_pred ChHHHHHHccCCCCCHHHHHHHHHHHhhhCCCCCCCCCC----CcCceeeCCCCCcc-----------------------
Confidence 699999999999999999999999999999998744433 36888999997644
Q ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHHchhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 006843 399 EENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKF 478 (629)
Q Consensus 399 ~~~~~~~~~~~~Yd~~~l~~A~~~ll~~~~~l~~~~~y~yDLvDv~RQvL~n~~~~~~~~~~~Ay~~~d~~~~~~~~~~~ 478 (629)
..++|+++.++|||.+|++||++||+++++|+++++|||||||||||||+|+|+.+|.++++||+++|.+.|++.+++|
T Consensus 54 -~~~~~~~~~~~Yd~~~l~~A~~~ll~a~~~l~~~~~yryDlvDvtRQvL~n~~~~~~~~~~~ay~~~d~~~~~~~~~~~ 132 (267)
T PF12972_consen 54 -SASTWGPPGIWYDPADLEKAWRLLLKAADELKDSETYRYDLVDVTRQVLSNYADELYQQLVDAYNSKDIEAFKALSARF 132 (267)
T ss_dssp --SSTT------S-HHHHHHHHHHHHHCHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -cccCCCCCCCCCCHHHHHHHHHHHHHhHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHhhCCCHHHHHHHHHHhhhcccccCCCCCCCCCCcccccchhcchhhhhccHHH
Q 006843 479 LQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPR 558 (629)
Q Consensus 479 l~li~dlD~LL~t~~~flLg~Wl~~Ar~~~~~~~ek~~yE~NAR~~IT~WG~~~~~~~g~L~DYA~k~W~GL~~dyY~pR 558 (629)
|+||+|||.||+||++|+||+||++||++|.|++||++||+|||+|||+|||. |+|+|||||+|+|||+|||+||
T Consensus 133 l~ll~dlD~lL~t~~~f~Lg~Wi~~Ar~~g~~~~e~~~yE~NAR~qIT~Wg~~-----g~l~DYA~k~W~GL~~dyY~pR 207 (267)
T PF12972_consen 133 LELLDDLDRLLATNPEFLLGKWIEDARAWGTTPEEKDLYEYNARNQITLWGPS-----GELHDYANKQWSGLVSDYYLPR 207 (267)
T ss_dssp HHHHHHHHHHHTT-GGGBHHHHHHHHHHSSTT--HHHHHHHHHHHHTTTSHTT-----TS-TTTT----BTHHHHTHHHH
T ss_pred HHHHHHHHHHHCcCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccCCC-----CCcccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997 7999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhcccccccCCCCCCCCCCCCHHHHHHHHHHHh
Q 006843 559 ASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKY 622 (629)
Q Consensus 559 W~~f~~~l~~~l~~~~~~~~~~~~~~~~~~E~~W~~~~~~~~~~y~~~p~gd~~~~a~~l~~ky 622 (629)
|++||++|.+++++|++||+++|+.+++++|++|+ ++++.||++|+||++++|++|++||
T Consensus 208 W~~f~~~l~~~l~~~~~~d~~~~~~~~~~~E~~W~----~~~~~y~~~~~gd~~~~a~~l~~ky 267 (267)
T PF12972_consen 208 WQMFFDYLRAALENGRPFDQTAFRRKLFAWEEKWV----NSTKVYPTEPTGDPVEVARRLYQKY 267 (267)
T ss_dssp HHHHHHHHHHHHTT-S------H----HHHHHHHH----TTS----SS-----HHHHHHH----
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhHHHHHHHHHHH----cCCCCCCCCCCCCHHHHHHHHhccC
Confidence 99999999999999999999999999999999999 9999999999999999999999998
No 4
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=92.53 E-value=0.15 Score=55.38 Aligned_cols=108 Identities=19% Similarity=0.306 Sum_probs=76.6
Q ss_pred hhHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCeeCcCCCCCCCchhhHhhCCCCcccc-CCCCCCcCCCCCc
Q 006843 43 LAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITR-LGDWNTVDRNPRW 121 (629)
Q Consensus 43 laW~rMgNi~gwgGPLp~~wi~~q~~LqkkIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~-~~~W~gF~~~p~~ 121 (629)
.+|.+|---+| -.--+| -.++++++++.||..||--+.+..|.-+.+++|++..+. .|...++..
T Consensus 32 ~~W~~lEP~eG---~ydF~~-------lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~---- 97 (374)
T PF02449_consen 32 FSWSWLEPEEG---QYDFSW-------LDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRRRGFGS---- 97 (374)
T ss_dssp CEHHHH-SBTT---B---HH-------HHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSBEECCC----
T ss_pred echhhccCCCC---eeecHH-------HHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCcCccCC----
Confidence 47777765443 223333 456788999999999998888889999999999987644 233333321
Q ss_pred ccccccCCCCchHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCC
Q 006843 122 CCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTP 166 (629)
Q Consensus 122 ~~~~~LdP~dplF~~i~~~F~~~q~~~yG~~~h~Y~~D~FnE~~p 166 (629)
....++.+|.|.+..+.|+++..+.|++--.+.+.+..||.+-
T Consensus 98 --~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 98 --RQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp --STT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred --ccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 1235689999999999999999999998557889999999766
No 5
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=92.22 E-value=0.63 Score=47.19 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHH
Q 006843 64 NQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIK 143 (629)
Q Consensus 64 ~~q~~LqkkIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~ 143 (629)
+...+-=++||+..++.||..||--... ..|..-.. ..+..+....--+.|.+
T Consensus 58 ~~~~~~ld~~v~~a~~~gi~vild~h~~------------------~~w~~~~~---------~~~~~~~~~~~~~~~~~ 110 (281)
T PF00150_consen 58 ETYLARLDRIVDAAQAYGIYVILDLHNA------------------PGWANGGD---------GYGNNDTAQAWFKSFWR 110 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEEEES------------------TTCSSSTS---------TTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccC------------------cccccccc---------ccccchhhHHHHHhhhh
Confidence 3444555899999999999998733222 34522111 11222223333334777
Q ss_pred HHHHHh-CCCCcccccCCCCCCCCCCCC-------chHHHHHHHHHHHHHHccCCCceEEEec--ccCCCCCCCCCchhH
Q 006843 144 QQILEY-GDVTDIYNCDTFNENTPPTND-------TNYISSLGAAVYKAMSEGDKDAVWLMQG--WLFYSDSAFWKPPQM 213 (629)
Q Consensus 144 ~q~~~y-G~~~h~Y~~D~FnE~~pp~~d-------~~~L~~~~~~i~~am~~~dP~AvWvmQg--W~F~~~~~fW~~~~~ 213 (629)
...+.| +. ..+.+.|++||......+ +..+....++++++|+++||+..=++.| |. ....
T Consensus 111 ~la~~y~~~-~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~---------~~~~ 180 (281)
T PF00150_consen 111 ALAKRYKDN-PPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWG---------ADPD 180 (281)
T ss_dssp HHHHHHTTT-TTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHH---------TBHH
T ss_pred hhccccCCC-CcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccc---------cccc
Confidence 888889 55 678899999999886432 3567899999999999999995444555 52 2221
Q ss_pred HHhhcCCC--CCCEEEEecCCC
Q 006843 214 KALLHSVP--LGKMIVLDLFAE 233 (629)
Q Consensus 214 ~a~L~~Vp--~~~mliLDL~sE 233 (629)
.+... .| .+..+|++...-
T Consensus 181 ~~~~~-~P~~~~~~~~~~~H~Y 201 (281)
T PF00150_consen 181 GAAAD-NPNDADNNDVYSFHFY 201 (281)
T ss_dssp HHHHH-STTTTTTSEEEEEEEE
T ss_pred hhhhc-CcccccCceeEEeeEe
Confidence 22233 66 357778776543
No 6
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=69.14 E-value=4.5 Score=45.86 Aligned_cols=103 Identities=22% Similarity=0.365 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCC-chHHHHHHHHHHHHHHHhC
Q 006843 72 KIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTD-PLFVEIGEAFIKQQILEYG 150 (629)
Q Consensus 72 kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~d-plF~~i~~~F~~~q~~~yG 150 (629)
+|++-+.+.||+|.+- -|+-|.++..... ..-.|.+ .+-.|.| ..+..+-+.|.++.++.||
T Consensus 88 ~i~D~l~~~g~~P~ve--l~f~p~~~~~~~~-----~~~~~~~----------~~~pp~~~~~W~~lv~~~~~h~~~RYG 150 (486)
T PF01229_consen 88 QILDFLLENGLKPFVE--LGFMPMALASGYQ-----TVFWYKG----------NISPPKDYEKWRDLVRAFARHYIDRYG 150 (486)
T ss_dssp HHHHHHHHCT-EEEEE--E-SB-GGGBSS-------EETTTTE----------E-S-BS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEE--EEechhhhcCCCC-----ccccccC----------CcCCcccHHHHHHHHHHHHHHHHhhcC
Confidence 6999999999999665 3778887753211 1112222 1233555 6789999999999999999
Q ss_pred CCCcc--cccCCCCCCCCCC----CC-chHHHHHHHHHHHHHHccCCCce
Q 006843 151 DVTDI--YNCDTFNENTPPT----ND-TNYISSLGAAVYKAMSEGDKDAV 193 (629)
Q Consensus 151 ~~~h~--Y~~D~FnE~~pp~----~d-~~~L~~~~~~i~~am~~~dP~Av 193 (629)
. +.+ ......||-.-.. +. .+|+ +.-++++++++++||++.
T Consensus 151 ~-~ev~~W~fEiWNEPd~~~f~~~~~~~ey~-~ly~~~~~~iK~~~p~~~ 198 (486)
T PF01229_consen 151 I-EEVSTWYFEIWNEPDLKDFWWDGTPEEYF-ELYDATARAIKAVDPELK 198 (486)
T ss_dssp H-HHHTTSEEEESS-TTSTTTSGGG-HHHHH-HHHHHHHHHHHHH-TTSE
T ss_pred C-ccccceeEEeCcCCCcccccCCCCHHHHH-HHHHHHHHHHHHhCCCCc
Confidence 5 332 1235578754431 11 2354 677899999999999986
No 7
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=66.12 E-value=69 Score=33.89 Aligned_cols=105 Identities=25% Similarity=0.388 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCeeCc---CCCCCCCchhhHhh--------CCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHH
Q 006843 71 KKIVSRMLELGMTPVL---PSFAGNVPAALKKI--------FPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGE 139 (629)
Q Consensus 71 kkIl~RmreLGM~PVL---PgF~G~VP~~~~~~--------~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~ 139 (629)
+++++++++.||+.|+ |...-- .+.+++. .++-+......|.+- ..++|.+.|.-.+
T Consensus 69 ~~~i~~l~~~G~~~~~~~~P~i~~~-~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~--------~~~~Dftnp~a~~--- 136 (308)
T cd06593 69 EGMLSRLKEKGFKVCLWINPYIAQK-SPLFKEAAEKGYLVKKPDGSVWQWDLWQPG--------MGIIDFTNPDACK--- 136 (308)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCC-chhHHHHHHCCeEEECCCCCeeeecccCCC--------cccccCCCHHHHH---
Confidence 6899999999999977 543211 1123332 122222232334331 3578988887554
Q ss_pred HHHHHHHHH---hCCCCcccccCCCCCCCCCCCC-----------chHHHHHHHHHHHHHHccCCC
Q 006843 140 AFIKQQILE---YGDVTDIYNCDTFNENTPPTND-----------TNYISSLGAAVYKAMSEGDKD 191 (629)
Q Consensus 140 ~F~~~q~~~---yG~~~h~Y~~D~FnE~~pp~~d-----------~~~L~~~~~~i~~am~~~dP~ 191 (629)
|+.++.+. +|- +.+-.| |+|..|+... ..|--..++++|+++++..++
T Consensus 137 -w~~~~~~~~~~~Gi--d~~~~D-~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~ 198 (308)
T cd06593 137 -WYKDKLKPLLDMGV--DCFKTD-FGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGE 198 (308)
T ss_pred -HHHHHHHHHHHhCC--cEEecC-CCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCC
Confidence 55544442 343 456666 6676554321 113346788999998888775
No 8
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=64.14 E-value=3.4 Score=43.00 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCeeC--cCCCCCCCchhh-----HhhCCCCccccCCCCC--------C-cCCCCCcccccccCCCCchH
Q 006843 71 KKIVSRMLELGMTPV--LPSFAGNVPAAL-----KKIFPSANITRLGDWN--------T-VDRNPRWCCTYLLDPTDPLF 134 (629)
Q Consensus 71 kkIl~RmreLGM~PV--LPgF~G~VP~~~-----~~~~P~a~i~~~~~W~--------g-F~~~p~~~~~~~LdP~dplF 134 (629)
.+.+++-++-|+.++ || -.|.|+.+= ...||.++.-+|..|. | +.+. +.+.-++|+.+.=
T Consensus 27 ~~f~~~~~~~ga~~m~T~p-m~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~---~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 27 DTFIDQNLAAGAYSMMTLP-MIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDK---TALTSNDPDTPDN 102 (239)
T ss_dssp HHHHHHHHHTT-EEEEEE---SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTS---SS--SSSGGSSSS
T ss_pred HHHHHHhhhcCcceeEeec-ccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCC---CCCCCCCCCCCcc
Confidence 456667778898888 44 378888876 6788988888866553 1 2211 0112234442222
Q ss_pred HHHHHHHHHHHHHHhCCCC------cccccCCCCCCC----------CCCCCchHHHHHHHHHHHHHHccCCCceEE---
Q 006843 135 VEIGEAFIKQQILEYGDVT------DIYNCDTFNENT----------PPTNDTNYISSLGAAVYKAMSEGDKDAVWL--- 195 (629)
Q Consensus 135 ~~i~~~F~~~q~~~yG~~~------h~Y~~D~FnE~~----------pp~~d~~~L~~~~~~i~~am~~~dP~AvWv--- 195 (629)
......|+..++..||+ . +||.+| ||.. |-.-..+.|.+-.-++=++++++||+|.=+
T Consensus 103 ~~y~~ewV~~l~~~~g~-a~~~~gvk~y~lD--NEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~GP~ 179 (239)
T PF12891_consen 103 PVYMDEWVNYLVNKYGN-ASTNGGVKYYSLD--NEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVFGPV 179 (239)
T ss_dssp EEEHHHHHHHHHHHH---TTSTTS--EEEES--S-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred HhHHHHHHHHHHHHHhc-cccCCCceEEEec--CchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEeech
Confidence 23356789999999999 5 899999 8863 221223457777778889999999998642
Q ss_pred EecccCC
Q 006843 196 MQGWLFY 202 (629)
Q Consensus 196 mQgW~F~ 202 (629)
.=||.+|
T Consensus 180 ~wgw~~y 186 (239)
T PF12891_consen 180 EWGWCGY 186 (239)
T ss_dssp E-SHHHH
T ss_pred hhcccee
Confidence 3355443
No 9
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=63.27 E-value=4.4 Score=27.76 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHcCCee
Q 006843 65 QQLVLQKKIVSRMLELGMTP 84 (629)
Q Consensus 65 ~q~~LqkkIl~RmreLGM~P 84 (629)
++.+...++++.|++.|++|
T Consensus 15 g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 15 GDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 34567899999999999998
No 10
>PRK00035 hemH ferrochelatase; Reviewed
Probab=57.43 E-value=1.1e+02 Score=32.83 Aligned_cols=162 Identities=16% Similarity=0.166 Sum_probs=80.8
Q ss_pred CCCCCHHHHHHHHHHHHHH-----------------------HHHHHHcCC-----eeCcCCCCCCCchhhHhhCCCCcc
Q 006843 55 GGPLAQNWLNQQLVLQKKI-----------------------VSRMLELGM-----TPVLPSFAGNVPAALKKIFPSANI 106 (629)
Q Consensus 55 gGPLp~~wi~~q~~LqkkI-----------------------l~RmreLGM-----~PVLPgF~G~VP~~~~~~~P~a~i 106 (629)
|.||.....++...||++. |++|++-|. -|..|-|+.++.....+..+.+.-
T Consensus 69 gSPl~~~t~~q~~~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~ 148 (333)
T PRK00035 69 GSPLNVITRRQAEALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALA 148 (333)
T ss_pred CChhHHHHHHHHHHHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHH
Confidence 7899888888888888764 345555554 466776665544333222211110
Q ss_pred ccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhCCC-CcccccCCCCCC---CCCCCCchHH---HHHHH
Q 006843 107 TRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDV-TDIYNCDTFNEN---TPPTNDTNYI---SSLGA 179 (629)
Q Consensus 107 ~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~yG~~-~h~Y~~D~FnE~---~pp~~d~~~L---~~~~~ 179 (629)
....=..|. +.+++ ..+|.|-+.-..-+++.-+.++.. .+.--+=.+|=. ....+|+ |- ...++
T Consensus 149 -~~~~~~~i~----~i~~~---~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~~~gd~-Y~~~~~~t~~ 219 (333)
T PRK00035 149 -KLRLQPEIR----FIRSY---YDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYIDKGDP-YQQQCEETAR 219 (333)
T ss_pred -hcCCCCcEE----EeCCc---cCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHhhcCCC-hHHHHHHHHH
Confidence 000000111 11111 246667666555666555555531 001111112200 0011233 44 44566
Q ss_pred HHHHHHHccCCCceEEEecccCCCCCCCCCchhHHHhhcCCCC---CCEEEE
Q 006843 180 AVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPL---GKMIVL 228 (629)
Q Consensus 180 ~i~~am~~~dP~AvWvmQgW~F~~~~~fW~~~~~~a~L~~Vp~---~~mliL 228 (629)
.|.+.+.- +..- +..+|+-.-.+.=|+.|.+...|..+.+ .+++|+
T Consensus 220 ~l~~~l~~--~~~~-~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~ 268 (333)
T PRK00035 220 LLAEALGL--PDED-YDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVV 268 (333)
T ss_pred HHHHHhCC--CCCC-eEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEE
Confidence 66665532 1222 4568874333446999999999988864 456664
No 11
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=51.55 E-value=5.4 Score=42.91 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHc-CCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHH
Q 006843 68 VLQKKIVSRMLEL-GMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQI 146 (629)
Q Consensus 68 ~LqkkIl~RmreL-GM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~ 146 (629)
.+++++.+++.++ |-.||.|||.|..|.. +++-. .|. -+|-...-+|+..=-+..
T Consensus 176 ~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G--------~~ttL------GRg----------GsD~~A~~la~~l~a~~v 231 (306)
T cd04247 176 ELAQVLGEKITACENRVPVVTGFFGNVPGG--------LLSQI------GRG----------YTDLCAALCAVGLNADEL 231 (306)
T ss_pred HHHHHHHHHhhccCCceEEeeccEecCCCC--------CeEEe------CCC----------chHHHHHHHHHHcCCCEE
Confidence 4567777777765 6789999999976652 22322 222 344455666655444455
Q ss_pred HHhCCCCcccccCCC-CCCCCCCCCchHHHHHHHHHHHHHHccCCCc
Q 006843 147 LEYGDVTDIYNCDTF-NENTPPTNDTNYISSLGAAVYKAMSEGDKDA 192 (629)
Q Consensus 147 ~~yG~~~h~Y~~D~F-nE~~pp~~d~~~L~~~~~~i~~am~~~dP~A 192 (629)
..+.+|+.+|++||= ++..-+-....| .++.+-.+.+.+-.+|++
T Consensus 232 ~i~tdVdGvyt~DP~~~~~a~~i~~is~-~ea~el~~~GakVlHp~t 277 (306)
T cd04247 232 QIWKEVDGIFTADPRKVPTARLLPSITP-EEAAELTYYGSEVIHPFT 277 (306)
T ss_pred EEeecCCeeECCCCCCCCCCeEecccCH-HHHHHHHhCcCcccCHHH
Confidence 678888899999994 333333333333 333333344444444444
No 12
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=51.43 E-value=36 Score=38.02 Aligned_cols=122 Identities=17% Similarity=0.096 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCeeCcCCCCCCCc--hhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHH
Q 006843 71 KKIVSRMLELGMTPVLPSFAGNVP--AALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILE 148 (629)
Q Consensus 71 kkIl~RmreLGM~PVLPgF~G~VP--~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~ 148 (629)
+-+.++.+++||+|=|--=..+|- ..+.+.+|+--+.. +.-.... -...++||++.|.-.+--...+....+.
T Consensus 107 ~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~-~~~~~~~----~r~~~vLD~~~pev~~~l~~~i~~ll~~ 181 (394)
T PF02065_consen 107 KPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRD-PGRPPTL----GRNQYVLDLSNPEVRDYLFEVIDRLLRE 181 (394)
T ss_dssp HHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCC-TTSE-EC----BTTBEEB-TTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEeccccccchhHHHHhCccceeec-CCCCCcC----cccceEEcCCCHHHHHHHHHHHHHHHHh
Confidence 456777799999997754333332 22555566553322 2211111 1124789999998666555566666667
Q ss_pred hCCCCcccccCCCCCCCCCCCCc---h---HHHHHHHHHHHHHHccCCCceEEEeccc
Q 006843 149 YGDVTDIYNCDTFNENTPPTNDT---N---YISSLGAAVYKAMSEGDKDAVWLMQGWL 200 (629)
Q Consensus 149 yG~~~h~Y~~D~FnE~~pp~~d~---~---~L~~~~~~i~~am~~~dP~AvWvmQgW~ 200 (629)
+|= +|...|--.....+.+.. . |...+ -.+++.|++..|+-++=.=.|=
T Consensus 182 ~gi--dYiK~D~n~~~~~~~~~~~~~~~~~~~~~~-y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 182 WGI--DYIKWDFNRDITEAGSPSLPEGYHRYVLGL-YRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp TT---SEEEEE-TS-TTS-SSTTS-GHHHHHHHHH-HHHHHHHHHHTTTSEEEE-BTT
T ss_pred cCC--CEEEeccccCCCCCCCCCchHHHHHHHHHH-HHHHHHHHHhCCCcEEEeccCC
Confidence 875 788888644443332221 1 22222 2578999999999999877763
No 13
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=46.15 E-value=53 Score=35.79 Aligned_cols=92 Identities=18% Similarity=0.330 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCee-----CcCCCCCCCchhhHh-hCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHH
Q 006843 68 VLQKKIVSRMLELGMTP-----VLPSFAGNVPAALKK-IFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAF 141 (629)
Q Consensus 68 ~LqkkIl~RmreLGM~P-----VLPgF~G~VP~~~~~-~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F 141 (629)
+.-..|++..+++||.. ||-+ .|+--.++.+ ++-+++|+. | .+++|.+|.+.++-+.|
T Consensus 189 ~~~~~il~qa~~~gm~~~~y~~il~~-~~~~~~~l~~~~~g~~nitg------~---------~~~~~~~~~v~~~~~~~ 252 (371)
T cd06388 189 ERLQNILEQIVSVGKHVKGYHYIIAN-LGFKDISLERFMHGGANVTG------F---------QLVDFNTPMVTKLMQRW 252 (371)
T ss_pred HHHHHHHHHHHhcCccccceEEEEcc-CccccccHHHHhccCCceEE------E---------EeecCCChhHHHHHHHH
Confidence 34578999999999986 6644 3444444433 244555543 2 24688888888776666
Q ss_pred HHHHHHHh-CCCCcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHc
Q 006843 142 IKQQILEY-GDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSE 187 (629)
Q Consensus 142 ~~~q~~~y-G~~~h~Y~~D~FnE~~pp~~d~~~L~~~~~~i~~am~~ 187 (629)
-+..++.| |. + .+|.....+.-++...+.++|++
T Consensus 253 ~~~~~~~~~~~-------~-----~~~~~~aAl~YDaV~l~a~A~~~ 287 (371)
T cd06388 253 KKLDQREYPGS-------E-----SPPKYTSALTYDGVLVMAEAFRN 287 (371)
T ss_pred HhcCccccCCC-------C-----CCccchHHHHHHHHHHHHHHHHH
Confidence 55444444 33 2 13444444555555556666654
No 14
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=42.42 E-value=49 Score=35.81 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCeeCcCCCC--CCCch--hhH-hhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHH
Q 006843 68 VLQKKIVSRMLELGMTPVLPSFA--GNVPA--ALK-KIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFI 142 (629)
Q Consensus 68 ~LqkkIl~RmreLGM~PVLPgF~--G~VP~--~~~-~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~ 142 (629)
+...+|++.++++||..-.-+|- |.-.. .|. -.+|.++|+. |. +.||++|...++-+.|-
T Consensus 197 ~~a~~il~qa~~lGm~~~~y~~i~T~l~~~~~~L~~~~~~~~niTg------F~---------l~d~~~~~v~~f~~~~~ 261 (333)
T cd06394 197 SMSHTILLKASELGMTSAFYKYILTTMDFPLLRLDSIVDDRSNILG------FS---------MFNQSHAFYQEFIRSLN 261 (333)
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEecCCcccccHHHhhcCCcceEE------EE---------eecCCcHHHHHHHHHHH
Confidence 45678999999999988777776 77766 443 3356666544 32 58999999998877776
Q ss_pred HHHHHHh
Q 006843 143 KQQILEY 149 (629)
Q Consensus 143 ~~q~~~y 149 (629)
++..+.+
T Consensus 262 ~~~~~~~ 268 (333)
T cd06394 262 QSWRENC 268 (333)
T ss_pred Hhhhhhc
Confidence 6665444
No 15
>COG1422 Predicted membrane protein [Function unknown]
Probab=41.98 E-value=84 Score=32.08 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=52.2
Q ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHH
Q 006843 438 YDLVDIT-RQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWL 501 (629)
Q Consensus 438 yDLvDv~-RQvL~n~~~~~~~~~~~Ay~~~d~~~~~~~~~~~l~li~dlD~LL~t~~~flLg~Wl 501 (629)
+=+||-- -+-+.+.++++.+++.+|++++|..+++++-++=.++.+|+-++..-+-.=++=+|+
T Consensus 66 ~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfkPM~~~~v 130 (201)
T COG1422 66 KLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFKPMLYISV 130 (201)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4455533 366889999999999999999999999999999999999999988776555555554
No 16
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=41.48 E-value=29 Score=30.31 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeC
Q 006843 56 GPLAQNWLNQQLVLQKKIVSRMLELGMTPV 85 (629)
Q Consensus 56 GPLp~~wi~~q~~LqkkIl~RmreLGM~PV 85 (629)
++.+.-++..+.+..++|.+-.++||++|.
T Consensus 56 ~~~~nP~~~~~~~~~~~~~~l~~~lGLtP~ 85 (100)
T PF05119_consen 56 NPKKNPAVSILNKAMKQMRSLASELGLTPA 85 (100)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 689999999999999999999999999994
No 17
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=40.59 E-value=14 Score=39.51 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHcCCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHH
Q 006843 65 QQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQ 144 (629)
Q Consensus 65 ~q~~LqkkIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~ 144 (629)
....+++++. ++-+-|..||.|||-|.=+. -.++. +.|. -.|-.-..||..+=-+
T Consensus 169 ~~~~i~~~l~-~ll~~~~vpVv~Gfig~~~~--------g~~tt------lgRg----------gsD~~A~~~A~~l~a~ 223 (298)
T cd04244 169 TYERVRKRLL-PMLEDGKIPVVTGFIGATED--------GAITT------LGRG----------GSDYSATIIGAALDAD 223 (298)
T ss_pred HHHHHHHHHH-HHhhcCCEEEEeCccccCCC--------CCEEE------ecCC----------ChHHHHHHHHHHcCCC
Confidence 3455566655 44445999999999884222 22222 2221 2333455555554444
Q ss_pred HHHHhCCCCcccccCCC-CCCCCCCCCchHHHHHHHHHHHHHHccCCCc
Q 006843 145 QILEYGDVTDIYNCDTF-NENTPPTNDTNYISSLGAAVYKAMSEGDKDA 192 (629)
Q Consensus 145 q~~~yG~~~h~Y~~D~F-nE~~pp~~d~~~L~~~~~~i~~am~~~dP~A 192 (629)
....+-+|+.+|.+||= +...-+-....| ..+.+-.+..++-.+|+|
T Consensus 224 ~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy-~Ea~el~~~Ga~vlhp~a 271 (298)
T cd04244 224 EIWIWKDVDGVMTADPRIVPEARTIPRLSY-AEAMELAYFGAKVLHPRT 271 (298)
T ss_pred EEEEEECCCCCCCCCCCCCCCCeEcCccCH-HHHHHHHhCCCcccCHHH
Confidence 44456677889999983 233333333333 334444443444444444
No 18
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=37.70 E-value=18 Score=26.00 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=11.5
Q ss_pred HHcCCCHHHHhhhcc
Q 006843 24 MNFNVTMEDLNDFFS 38 (629)
Q Consensus 24 ~~lG~t~~ei~~ff~ 38 (629)
++.|+|-+||++|+.
T Consensus 13 ~~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 13 KESGLSKEEIREFLE 27 (30)
T ss_dssp HHTT--HHHHHHHHH
T ss_pred HHcCCCHHHHHHHHH
Confidence 589999999999974
No 19
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=37.07 E-value=27 Score=27.42 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHcCCee
Q 006843 65 QQLVLQKKIVSRMLELGMTP 84 (629)
Q Consensus 65 ~q~~LqkkIl~RmreLGM~P 84 (629)
++.-|++||..||+++|+.-
T Consensus 24 K~~~l~rRl~~rm~~~~~~~ 43 (57)
T PF03705_consen 24 KRSLLERRLARRMRALGLPS 43 (57)
T ss_dssp GHHHHHHHHHHHHHHHT---
T ss_pred hHHHHHHHHHHHHHHcCCCC
Confidence 56789999999999999864
No 20
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=35.18 E-value=20 Score=38.34 Aligned_cols=67 Identities=24% Similarity=0.332 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhC
Q 006843 71 KKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYG 150 (629)
Q Consensus 71 kkIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~yG 150 (629)
++|.+.+.+.|..||.|||.|-=+. -.++-.| |. -.|-+..-+|..+=-.....+-
T Consensus 170 ~~l~~~~~~~~~v~Vv~Gfig~~~~--------G~~ttlG------RG----------GSD~~A~~lA~~l~a~~l~i~t 225 (294)
T cd04257 170 ERIKAWFSSNGKVIVVTGFIASNPQ--------GETTTLG------RN----------GSDYSAAILAALLDADQVEIWT 225 (294)
T ss_pred HHHHHHHhcCCCEEEecCcccCCCC--------CCEEECC------CC----------chHHHHHHHHHHhCCCEEEEEe
Confidence 4444455555999999999883222 2223222 21 3455677777776555566788
Q ss_pred CCCcccccCCC
Q 006843 151 DVTDIYNCDTF 161 (629)
Q Consensus 151 ~~~h~Y~~D~F 161 (629)
+|+.+|.+||=
T Consensus 226 dVdGvyt~DP~ 236 (294)
T cd04257 226 DVDGVYSADPR 236 (294)
T ss_pred CCCccCCCCCC
Confidence 88899999993
No 21
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.87 E-value=2.2e+02 Score=30.35 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCeeCc---CCCCCCCchhhHhhC-CCCccc-------cCCC-CCCcCCCCCcccccccCCCCchHHHH
Q 006843 70 QKKIVSRMLELGMTPVL---PSFAGNVPAALKKIF-PSANIT-------RLGD-WNTVDRNPRWCCTYLLDPTDPLFVEI 137 (629)
Q Consensus 70 qkkIl~RmreLGM~PVL---PgF~G~VP~~~~~~~-P~a~i~-------~~~~-W~gF~~~p~~~~~~~LdP~dplF~~i 137 (629)
=+++++++++.||++|+ |.+. .-.+.+++.. .+.=|. -.+. |.| .+.++|.+.|.-.+.
T Consensus 72 p~~mi~~l~~~G~k~~l~i~P~i~-~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g--------~~~~~Dftnp~a~~w 142 (303)
T cd06592 72 PKGMIDQLHDLGFRVTLWVHPFIN-TDSENFREAVEKGYLVSEPSGDIPALTRWWNG--------TAAVLDFTNPEAVDW 142 (303)
T ss_pred HHHHHHHHHHCCCeEEEEECCeeC-CCCHHHHhhhhCCeEEECCCCCCCcccceecC--------CcceEeCCCHHHHHH
Confidence 36788999999999998 6543 2233454411 111111 1122 222 246899999985554
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCCC
Q 006843 138 GEAFIKQQILEYGDVTDIYNCDTFNEN 164 (629)
Q Consensus 138 ~~~F~~~q~~~yG~~~h~Y~~D~FnE~ 164 (629)
=..-+++.....|- +.+-.| |+|.
T Consensus 143 ~~~~~~~~~~~~Gv--dg~w~D-~~E~ 166 (303)
T cd06592 143 FLSRLKSLQEKYGI--DSFKFD-AGEA 166 (303)
T ss_pred HHHHHHHHHHHhCC--cEEEeC-CCCc
Confidence 33333333334565 566667 6775
No 22
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=34.68 E-value=99 Score=29.37 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 006843 449 SKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLAS 491 (629)
Q Consensus 449 ~n~~~~~~~~~~~Ay~~~d~~~~~~~~~~~l~li~dlD~LL~t 491 (629)
...+..+|.++..-.++++.+.-+...+++++-++-||..|+.
T Consensus 5 ~~~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~ 47 (134)
T cd03198 5 NTAGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNS 47 (134)
T ss_pred hhhHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHcc
Confidence 3456788999999988998888899999999999999999987
No 23
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=34.37 E-value=6.6e+02 Score=27.56 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHHH---------------------HHHHHHHcCC-----eeCcCCCCCCCchh-hH---hhCCCCc
Q 006843 56 GPLAQNWLNQQLVLQKK---------------------IVSRMLELGM-----TPVLPSFAGNVPAA-LK---KIFPSAN 105 (629)
Q Consensus 56 GPLp~~wi~~q~~Lqkk---------------------Il~RmreLGM-----~PVLPgF~G~VP~~-~~---~~~P~a~ 105 (629)
.||-.---.++.+|+++ .++.|++-|. -|..|=|+-.+=.+ ++ +..-..+
T Consensus 69 sPL~~~T~~q~~~L~~~L~~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~ 148 (320)
T COG0276 69 SPLNVITRAQAAALEERLDLPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELR 148 (320)
T ss_pred CccHHHHHHHHHHHHHHhCCCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcC
Confidence 48877666777788886 5889999998 46677787776644 22 2211111
Q ss_pred cccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCC----CCCchHHHHHHHHH
Q 006843 106 ITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPP----TNDTNYISSLGAAV 181 (629)
Q Consensus 106 i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~yG~~~h~Y~~D~FnE~~pp----~~d~~~L~~~~~~i 181 (629)
.+..+.-.++ | +++|.|-+.=+.=+++--+.+|. ++..-+=.||=. |- -+|| |...+-+++
T Consensus 149 --~~~~i~~I~~---~-------~~~p~yI~a~a~~I~~~~~~~~~-~~~~llfSaHgl-P~~~~~~GDp-Y~~q~~~t~ 213 (320)
T COG0276 149 --GQPKISTIPD---Y-------YDEPLYIEALADSIREKLAKHPR-DDDVLLFSAHGL-PKRYIDEGDP-YPQQCQETT 213 (320)
T ss_pred --CCCceEEecC---c-------cCChHHHHHHHHHHHHHHHhcCC-CCeEEEEecCCC-chhhhhcCCc-hHHHHHHHH
Confidence 1111211211 3 68899988877778888888873 444444445521 11 1343 655555544
Q ss_pred HHHHHccC---CCceEEEecccCCCCCCCCCchhHHHhhcCCCCC---CEEEEe
Q 006843 182 YKAMSEGD---KDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLG---KMIVLD 229 (629)
Q Consensus 182 ~~am~~~d---P~AvWvmQgW~F~~~~~fW~~~~~~a~L~~Vp~~---~mliLD 229 (629)
..-+.+.. ++-..--|+ -|.. .=|-.|.+...|..+++. +++|+=
T Consensus 214 ~li~e~lg~~~~~~~~~~QS-~~G~--~~WL~P~t~~~l~~L~~~g~k~iiv~p 264 (320)
T COG0276 214 RLIAEALGLPEEEYDLTFQS-RFGP--EPWLQPYTDDLLEELGEKGVKKIIVVP 264 (320)
T ss_pred HHHHHHcCCCchheeEEeec-CCCC--CCCCCCCHHHHHHHHHhcCCCeEEEEC
Confidence 44444433 444555555 4444 459999999999999843 788763
No 24
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=31.83 E-value=40 Score=27.10 Aligned_cols=18 Identities=6% Similarity=0.425 Sum_probs=14.4
Q ss_pred HHHHHHcCCCHHHHhhhc
Q 006843 20 QKVFMNFNVTMEDLNDFF 37 (629)
Q Consensus 20 ~~v~~~lG~t~~ei~~ff 37 (629)
...++.+|||=+||++++
T Consensus 7 I~~~r~lGfsL~eI~~~l 24 (65)
T PF09278_consen 7 IRRLRELGFSLEEIRELL 24 (65)
T ss_dssp HHHHHHTT--HHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 467899999999999999
No 25
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=31.34 E-value=93 Score=35.58 Aligned_cols=70 Identities=20% Similarity=0.416 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHH
Q 006843 68 VLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQIL 147 (629)
Q Consensus 68 ~LqkkIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~ 147 (629)
+-=+++++.+++.||+|++==|-=-.|..|.++| |.|.+ +.++ ..|.+.+ +..-+
T Consensus 110 ~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~y--------GGW~n---------~~~~----~~F~~Ya----~~~f~ 164 (477)
T PRK15014 110 KFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQY--------GSWTN---------RKVV----DFFVRFA----EVVFE 164 (477)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhc--------CCCCC---------hHHH----HHHHHHH----HHHHH
Confidence 3347999999999999998777667899998766 55522 1112 2565544 44556
Q ss_pred HhCCCCcccccCCCCCC
Q 006843 148 EYGDVTDIYNCDTFNEN 164 (629)
Q Consensus 148 ~yG~~~h~Y~~D~FnE~ 164 (629)
.||+--+++. +|||.
T Consensus 165 ~fgdrVk~Wi--T~NEp 179 (477)
T PRK15014 165 RYKHKVKYWM--TFNEI 179 (477)
T ss_pred HhcCcCCEEE--EecCc
Confidence 7887445554 78884
No 26
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=31.08 E-value=1.4e+02 Score=32.42 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCeeC----cCCCCCCCchhhHh-hCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHH
Q 006843 68 VLQKKIVSRMLELGMTPV----LPSFAGNVPAALKK-IFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAF 141 (629)
Q Consensus 68 ~LqkkIl~RmreLGM~PV----LPgF~G~VP~~~~~-~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F 141 (629)
+.-..|++.++++||.|- +-+-.|+--.+|.+ ++.+++|+. | .+.+|.+|...++-+.|
T Consensus 187 ~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~~l~~~~~~~~nitg------~---------~~~~~~~~~v~~f~~~~ 250 (370)
T cd06389 187 DKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLSKIQFGGANVSG------F---------QIVDYDDPLVSKFIQRW 250 (370)
T ss_pred HHHHHHHHHHHHhCccccceEEEEccCCccccchhhhccCCcceEE------E---------EEecCCCchHHHHHHHH
Confidence 455789999999999976 22333554445533 255665543 2 25678888876655555
No 27
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=28.24 E-value=2.1e+02 Score=27.56 Aligned_cols=53 Identities=28% Similarity=0.291 Sum_probs=39.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhcc
Q 006843 437 RYDLVDITRQALSKLANQVYMDAVIAFQHK---DASAFNIHSQKFLQLIKDIDELLAS 491 (629)
Q Consensus 437 ~yDLvDv~RQvL~n~~~~~~~~~~~Ay~~~---d~~~~~~~~~~~l~li~dlD~LL~t 491 (629)
|-+|-|+.|++=+-. .. ..++..||+.. |.+.|...-..|=+.+.++|.||.+
T Consensus 73 r~~l~~il~sIg~la-~N-in~i~~Aa~~~~~pd~e~f~aER~~fGk~fA~ld~lLr~ 128 (147)
T PF07328_consen 73 RQKLEDILRSIGGLA-TN-INQILKAANRTPRPDYEAFRAERKAFGKEFADLDALLRS 128 (147)
T ss_pred HHHHHHHHHHHHHHH-HH-HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777764432 22 34677788754 8889999999999999999998864
No 28
>PF10629 DUF2475: Protein of unknown function (DUF2475); InterPro: IPR018902 This entry represents both UPF0573 and UPF0605 families. Both these families of proteins have no known function.
Probab=26.83 E-value=29 Score=29.60 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=10.0
Q ss_pred CcCCCCCCCchh
Q 006843 85 VLPSFAGNVPAA 96 (629)
Q Consensus 85 VLPgF~G~VP~~ 96 (629)
.+|||+||||..
T Consensus 4 ~iPgY~G~vP~~ 15 (71)
T PF10629_consen 4 MIPGYTGYVPGY 15 (71)
T ss_pred CCCCccCcCCcc
Confidence 379999999984
No 29
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=26.37 E-value=31 Score=36.94 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=50.2
Q ss_pred HHHHHHHHc--CCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHh
Q 006843 72 KIVSRMLEL--GMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEY 149 (629)
Q Consensus 72 kIl~RmreL--GM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~y 149 (629)
++.+.++.| |-.||.|||.|.-+.. .++-.| +. -+|-...-+|..+=-+....+
T Consensus 167 ~~~~~~~~~~~~~v~Vv~Gf~g~~~~G--------~~ttLG----rg------------gsD~~a~~~a~~l~a~~~~i~ 222 (292)
T cd04258 167 LAAKLLKPLLAGTVVVTQGFIGSTEKG--------RTTTLG----RG------------GSDYSAALLAEALHAEELQIW 222 (292)
T ss_pred HHHHHHHHhhcCCEEEECCccccCCCC--------CEEecC----CC------------chHHHHHHHHHHcCCCEEEEE
Confidence 333444443 5789999999964442 222222 11 123355566655544555577
Q ss_pred CCCCcccccCCC-CCCCCCCCCchHHHHHHHHHHHHHHccCCC
Q 006843 150 GDVTDIYNCDTF-NENTPPTNDTNYISSLGAAVYKAMSEGDKD 191 (629)
Q Consensus 150 G~~~h~Y~~D~F-nE~~pp~~d~~~L~~~~~~i~~am~~~dP~ 191 (629)
-+|+.+|.+||= ++..-+-...+| ..+.+-.|..++-.+|.
T Consensus 223 tdv~Gv~~~dP~~~~~a~~i~~isy-~Ea~ela~~Gakvlhp~ 264 (292)
T cd04258 223 TDVAGIYTTDPRICPAARAIKEISF-AEAAEMATFGAKVLHPA 264 (292)
T ss_pred ECCCccCCCCCCCCCCCeEeceeCH-HHHHHHHHCCCcccCHH
Confidence 888899999995 344434333333 33333333333333333
No 30
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=26.37 E-value=51 Score=28.93 Aligned_cols=22 Identities=9% Similarity=0.324 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCCHHHHhhhcc
Q 006843 17 AIWQKVFMNFNVTMEDLNDFFS 38 (629)
Q Consensus 17 aVw~~v~~~lG~t~~ei~~ff~ 38 (629)
+=|.++-++||||+.||..+=.
T Consensus 14 ~~Wk~lar~LG~s~~eI~~ie~ 35 (86)
T cd08777 14 KKWKRCARKLGFTESEIEEIDH 35 (86)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4499999999999999998753
No 31
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=26.00 E-value=34 Score=36.54 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhC
Q 006843 71 KKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYG 150 (629)
Q Consensus 71 kkIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~yG 150 (629)
++|.+.+.+.|..||.|||.|.=+. -+++-.| |. -+|-.-..+|+.+=-+....+-
T Consensus 169 ~~~~~~~~~~~~v~Vv~Gfig~~~~--------G~~ttLG------Rg----------gsD~~A~~~a~~l~a~~~~i~t 224 (293)
T cd04243 169 ERLAQLLAEHGKVVVTQGFIASNED--------GETTTLG------RG----------GSDYSAALLAALLDAEEVEIWT 224 (293)
T ss_pred HHHHHHHhcCCCEEEecCccccCCC--------CCEEEeC------CC----------CcHHHHHHHHHHcCCCEEEEEe
Confidence 3444444444999999999983222 2222222 11 2344566666665445555677
Q ss_pred CCCcccccCCC
Q 006843 151 DVTDIYNCDTF 161 (629)
Q Consensus 151 ~~~h~Y~~D~F 161 (629)
+|+.+|.+||=
T Consensus 225 dvdGiyt~dP~ 235 (293)
T cd04243 225 DVDGVYTADPR 235 (293)
T ss_pred CCCccCCCCCC
Confidence 77899999993
No 32
>PRK08210 aspartate kinase I; Reviewed
Probab=25.75 E-value=26 Score=38.71 Aligned_cols=67 Identities=27% Similarity=0.350 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHh
Q 006843 70 QKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEY 149 (629)
Q Consensus 70 qkkIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~y 149 (629)
..+.+.++.+-|..||++||.|.=+ .|....+.|- -.|-....||+.+=-+....+
T Consensus 122 ~~~~l~~~l~~~~vpVi~G~~~~~~--------------~g~~~~l~rg----------~sD~~A~~lA~~l~A~~l~i~ 177 (403)
T PRK08210 122 NPDRILEALEEGDVVVVAGFQGVTE--------------NGDITTLGRG----------GSDTTAAALGVALKAEYVDIY 177 (403)
T ss_pred hHHHHHHHHhcCCEEEeeCeeecCC--------------CCCEEEeCCC----------chHHHHHHHHHHcCCCEEEEE
Confidence 3456777778899999999987311 1222112110 345577777777644444456
Q ss_pred CCCCcccccCC
Q 006843 150 GDVTDIYNCDT 160 (629)
Q Consensus 150 G~~~h~Y~~D~ 160 (629)
-+|+.+|.+||
T Consensus 178 tDV~GV~~~dP 188 (403)
T PRK08210 178 TDVDGIMTADP 188 (403)
T ss_pred ECCCCCCcCCC
Confidence 67788999998
No 33
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.71 E-value=8.3e+02 Score=26.00 Aligned_cols=205 Identities=15% Similarity=0.088 Sum_probs=107.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCeeC-cCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCch
Q 006843 55 GGPLAQNWLNQQLVLQKKIVSRMLELGMTPV-LPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPL 133 (629)
Q Consensus 55 gGPLp~~wi~~q~~LqkkIl~RmreLGM~PV-LPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dpl 133 (629)
+|+++++=+ +.|++--+++||+-| .--..||.=..++ +|. ......+. . + +..|+|.+|.
T Consensus 54 ~~~yT~~ei-------~ei~~yA~~~gI~vIPeid~pGH~~~~l~--~~~--~~~l~~~~---~---~--~~~l~~~~~~ 114 (301)
T cd06565 54 RGAYTKEEI-------REIDDYAAELGIEVIPLIQTLGHLEFILK--HPE--FRHLREVD---D---P--PQTLCPGEPK 114 (301)
T ss_pred CCCcCHHHH-------HHHHHHHHHcCCEEEecCCCHHHHHHHHh--Ccc--cccccccC---C---C--CCccCCCChh
Confidence 688876554 468999999999866 3334688766554 342 22222221 1 1 3469999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcc-cccCCCCCCCCCC--------CCchHHHHHHHHHHHHHHccCCCceEEEecccCCCC
Q 006843 134 FVEIGEAFIKQQILEYGDVTDI-YNCDTFNENTPPT--------NDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSD 204 (629)
Q Consensus 134 F~~i~~~F~~~q~~~yG~~~h~-Y~~D~FnE~~pp~--------~d~~~L~~~~~~i~~am~~~dP~AvWvmQgW~F~~~ 204 (629)
=-++-+..++|..++|.. ..| -++|=+++.+... +..+-....-+.|.+-+++..+ -++.|- |
T Consensus 115 t~~fi~~li~ev~~~f~s-~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~----~~~~W~---D 186 (301)
T cd06565 115 TYDFIEEMIRQVLELHPS-KYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIKKRGP----KPMMWD---D 186 (301)
T ss_pred HHHHHHHHHHHHHHhCCC-CeEEECCCcccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCC----EEEEEh---H
Confidence 999999999999999975 333 5777766543211 1111123334456666666666 355672 1
Q ss_pred CCCCCchhHHHhhcCCCCCCEEEEecCCCcc-ccc----cccCCCCCCCceee-eccCCCCccccccchhhhhcChhhhh
Q 006843 205 SAFWKPPQMKALLHSVPLGKMIVLDLFAEVK-PIW----RTSSQFYGAPYVWC-MLHNFGGNIEIYGILDSIASGPVDAR 278 (629)
Q Consensus 205 ~~fW~~~~~~a~L~~Vp~~~mliLDL~sE~~-p~W----~~~~~f~G~pwIWc-~L~NFGG~~gl~G~l~~i~~~~~~a~ 278 (629)
. +...+.....+..+|++ +|+-.|.-.. ... .+.-.-+|.+++-| -.++|.|-+ ++.+.--.+...++
T Consensus 187 ~-~~~~~~~~~~~~~l~~~--v~~~~W~y~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~---~~~~~~~~n~~~~~ 260 (301)
T cd06565 187 M-LRKLSIEPEALSGLPKL--VTPVVWDYYADLDEHDRPIGLWKKYGSVFAVAWGASAWKGAT---PPNDKHLENIKSWL 260 (301)
T ss_pred H-hcCCCCChHHHhCCCCC--eEEEEecCcCCcchhhHhHHHHHHhCCCceEeeeechhccCC---CCHHHHHHHHHHHH
Confidence 0 11100012345677765 3333333221 111 11111234444444 455555544 44444444444444
Q ss_pred hcC-CCceEEEeeCc
Q 006843 279 VSE-NSTMVGVGMCM 292 (629)
Q Consensus 279 ~~~-~~~m~GiG~tp 292 (629)
... .....|+=+|.
T Consensus 261 ~~~~~~~~~G~~~T~ 275 (301)
T cd06565 261 KAAKKNGVQGILLTG 275 (301)
T ss_pred HHHHHCCCCEEEEEe
Confidence 332 22466666654
No 34
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=24.91 E-value=1e+02 Score=24.49 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCchH
Q 006843 470 AFNIHSQKFLQLIKDIDELLASNDNFLLG 498 (629)
Q Consensus 470 ~~~~~~~~~l~li~dlD~LL~t~~~flLg 498 (629)
..+..-+++.+.++.+|..|+.++ |++|
T Consensus 3 ~~~~~~~~~~~~l~~le~~L~~~~-fl~G 30 (69)
T PF13410_consen 3 AVERARAQLEAALDALEDHLADGP-FLFG 30 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSS-BTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-CCCC
Confidence 456777889999999999999998 7766
No 35
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component.
Probab=24.74 E-value=19 Score=38.64 Aligned_cols=42 Identities=31% Similarity=0.663 Sum_probs=30.1
Q ss_pred CCCCCCCCHHHHHHHHHH------HHHHHHHHHHc-CCeeCcCCCCCCCc
Q 006843 52 HGWGGPLAQNWLNQQLVL------QKKIVSRMLEL-GMTPVLPSFAGNVP 94 (629)
Q Consensus 52 ~gwgGPLp~~wi~~q~~L------qkkIl~RmreL-GM~PVLPgF~G~VP 94 (629)
.||||||.-.=-+++.-+ -.-|.+|+.|| ||++| -||--.||
T Consensus 10 gGwGGPL~i~pt~~KKivyiTGG~~p~i~~kiaeLTG~eaV-dGFk~~~p 58 (331)
T TIGR00825 10 GGWGGPLTVKPTEGKKIVYITAGTEPAIVDKLVNLTGWKAV-DGFKTGEP 58 (331)
T ss_pred CCcCCCEEEecCCCeEEEEEcCCCCCHHHHHHHHhhCCeec-ccccCCCC
Confidence 469999854333333111 45688999999 99987 79998898
No 36
>PRK11546 zraP zinc resistance protein; Provisional
Probab=24.21 E-value=1.3e+02 Score=29.31 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=28.2
Q ss_pred hhhccCchhhhHHhhcccCCCCC----CCCHHHHHHHHHHHHHHHHHH
Q 006843 34 NDFFSGPAFLAWARMGNLHGWGG----PLAQNWLNQQLVLQKKIVSRM 77 (629)
Q Consensus 34 ~~ff~GPA~laW~rMgNi~gwgG----PLp~~wi~~q~~LqkkIl~Rm 77 (629)
...++|+|+ ||+-+||-+|||| +||++-.+.-..|.++-.+.+
T Consensus 17 ~~~~s~~a~-A~~~~G~~~G~~~~~~~~LT~EQQa~~q~I~~~f~~~t 63 (143)
T PRK11546 17 LAMGSGSAF-AHHHWGGGHGMWQQNAAPLTTEQQAAWQKIHNDFYAQT 63 (143)
T ss_pred HHHhhhHHH-HhhccCCCCCCCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 456777775 7777799999887 688776555544444433333
No 37
>COG5005 Mu-like prophage protein gpG [General function prediction only]
Probab=24.09 E-value=21 Score=34.02 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=29.5
Q ss_pred CCEEEE--ecCCCccccccccCCCCCCCceeeeccCCCCcccc
Q 006843 223 GKMIVL--DLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEI 263 (629)
Q Consensus 223 ~~mliL--DL~sE~~p~W~~~~~f~G~pwIWc~L~NFGG~~gl 263 (629)
|+.|.+ +|..-.++.+.....--|+.=-+..+|||||.+|+
T Consensus 62 Gk~L~~~GrL~~sltt~y~n~~AlvGtne~YaaiHqfGG~~gr 104 (140)
T COG5005 62 GKILQDSGRLAGSLTTDYGNNTALVGTNEEYAAIHQFGGKTGR 104 (140)
T ss_pred CCceeecchhhhcccccCCCceeeecccchhHHHHHhcCcCCC
Confidence 454444 23344466666666778888889999999999995
No 38
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=23.99 E-value=4e+02 Score=28.61 Aligned_cols=105 Identities=20% Similarity=0.219 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCeeCc---CCCCCCCchhhHhh--------CCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHH
Q 006843 71 KKIVSRMLELGMTPVL---PSFAGNVPAALKKI--------FPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGE 139 (629)
Q Consensus 71 kkIl~RmreLGM~PVL---PgF~G~VP~~~~~~--------~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~ 139 (629)
++.++.+.+.|++.|+ |++.--.+.-+++. .++-.......|.+. +.++|.+.|. ++
T Consensus 74 ~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~--------~~~~Dftnp~----a~ 141 (317)
T cd06594 74 DELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFD--------CGVLDLTNPA----AR 141 (317)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCC--------ceeeecCCHH----HH
Confidence 5788889999999875 44432122212322 111111122334332 3578888888 44
Q ss_pred HHHHHHHHH----hCCCCcccccCCCCCCCCCCC---C---c-----hHHHHHHHHHHHHHHccCC
Q 006843 140 AFIKQQILE----YGDVTDIYNCDTFNENTPPTN---D---T-----NYISSLGAAVYKAMSEGDK 190 (629)
Q Consensus 140 ~F~~~q~~~----yG~~~h~Y~~D~FnE~~pp~~---d---~-----~~L~~~~~~i~~am~~~dP 190 (629)
.++.++.+. .|- +.+-.| |+|..|+.. + . .|--..++++|+++++..|
T Consensus 142 ~ww~~~~~~~~~~~Gv--dg~w~D-~~E~~p~d~~~~~g~~~~~~hN~y~~~~~~~~~~~~~~~~~ 204 (317)
T cd06594 142 DWFKQVIKEMLLDLGL--SGWMAD-FGEYLPFDAVLHSGEDAATMHNRYPELWAKLNREAVEEAGK 204 (317)
T ss_pred HHHHHHHHHHhhhcCC--cEEEec-CCCCCCCcceecCCCCHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 455444432 344 344556 688766532 1 1 1445578888888887754
No 39
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=23.82 E-value=2.7e+02 Score=29.81 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHcCCee
Q 006843 68 VLQKKIVSRMLELGMTP 84 (629)
Q Consensus 68 ~LqkkIl~RmreLGM~P 84 (629)
+-..+|++.++++||.+
T Consensus 194 ~~~~~i~~qa~~~gm~~ 210 (382)
T cd06380 194 ERLNKILEQIVDVGKNR 210 (382)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 45578999999999995
No 40
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=23.45 E-value=2.4e+02 Score=31.83 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHcCCeeCcCCCCCCCchhhHh
Q 006843 66 QLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKK 99 (629)
Q Consensus 66 q~~LqkkIl~RmreLGM~PVLPgF~G~VP~~~~~ 99 (629)
-.+-=+++++.+++-||+|++-=|---+|..|.+
T Consensus 97 ~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~ 130 (455)
T PF00232_consen 97 GLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED 130 (455)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH
T ss_pred HhhhhHHHHHHHHhhccceeeeeeecccccceee
Confidence 3444578999999999999999999999999987
No 41
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=23.01 E-value=2.4e+02 Score=29.00 Aligned_cols=98 Identities=21% Similarity=0.346 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCC-CCchHHHHHHHHHHHHHHHh
Q 006843 71 KKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDP-TDPLFVEIGEAFIKQQILEY 149 (629)
Q Consensus 71 kkIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP-~dplF~~i~~~F~~~q~~~y 149 (629)
-+++++-++-||+. -||+- -|.. ..|.| +.. ..+...+.=..|+++..+.|
T Consensus 19 D~~~~~a~~~gi~v-----~gH~l----------------~W~~--~~P~W-----~~~~~~~~~~~~~~~~i~~v~~ry 70 (254)
T smart00633 19 DAIVNFAKENGIKV-----RGHTL----------------VWHS--QTPDW-----VFNLSKETLLARLENHIKTVVGRY 70 (254)
T ss_pred HHHHHHHHHCCCEE-----EEEEE----------------eecc--cCCHh-----hhcCCHHHHHHHHHHHHHHHHHHh
Confidence 45899999999987 35542 1322 11222 221 12344555567888888899
Q ss_pred CCCCcccccCCCCCCCCCCCC----chHH----HHHHHHHHHHHHccCCCceEEEec
Q 006843 150 GDVTDIYNCDTFNENTPPTND----TNYI----SSLGAAVYKAMSEGDKDAVWLMQG 198 (629)
Q Consensus 150 G~~~h~Y~~D~FnE~~pp~~d----~~~L----~~~~~~i~~am~~~dP~AvWvmQg 198 (629)
+. .+...|..||.....+. ..+. .+.-+..|+..+++||+|.=++=.
T Consensus 71 ~g--~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 71 KG--KIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred CC--cceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 76 47779999996543211 0111 133456778888999998877643
No 42
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=21.39 E-value=42 Score=36.86 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhCC
Q 006843 72 KIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGD 151 (629)
Q Consensus 72 kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~yG~ 151 (629)
+.+.++-+-|-.||++||.|.=+. -.++. +.|. -.|-.-..||..+=-+....+-+
T Consensus 120 ~~l~~~l~~~~vpVi~g~~~~~~~--------g~~~~------lgrg----------~sD~~A~~lA~~l~A~~l~i~td 175 (401)
T TIGR00656 120 ERLLPLLEEGIIVVVAGFQGATEK--------GYTTT------LGRG----------GSDYTAALLAAALKADRVDIYTD 175 (401)
T ss_pred HHHHHHHhCCCEEEecCcceeCCC--------CCEee------cCCC----------cHHHHHHHHHHHcCCCEEEEEEC
Confidence 456666778999999999883111 11111 1111 23556777777664444445667
Q ss_pred CCcccccCCCC-CCCCCCCCchHHHHHHHHHHHHHHccCCCce
Q 006843 152 VTDIYNCDTFN-ENTPPTNDTNYISSLGAAVYKAMSEGDKDAV 193 (629)
Q Consensus 152 ~~h~Y~~D~Fn-E~~pp~~d~~~L~~~~~~i~~am~~~dP~Av 193 (629)
|+-+|.+||=- ...-+-....| .++.+-++..++-.+|.|+
T Consensus 176 V~Gv~~~DP~~~~~a~~i~~ls~-~ea~~l~~~G~~v~~~~a~ 217 (401)
T TIGR00656 176 VPGVYTTDPRVVEAAKRIDKISY-EEALELATFGAKVLHPRTV 217 (401)
T ss_pred CCCCCcCCCCCCCCcEECCccCH-HHHHHHHHcCCcccCHHHH
Confidence 78899999942 22222223322 4555555555555555543
No 43
>TIGR03356 BGL beta-galactosidase.
Probab=21.12 E-value=5.1e+02 Score=29.15 Aligned_cols=100 Identities=21% Similarity=0.311 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHcCCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHH
Q 006843 65 QQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQ 144 (629)
Q Consensus 65 ~q~~LqkkIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~ 144 (629)
+..+-=+++++.+++.||+||+==+-=-+|..|.++ |.|.+ +.+. ..|.+.++...
T Consensus 91 ~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~---------gGw~~---------~~~~----~~f~~ya~~~~-- 146 (427)
T TIGR03356 91 KGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR---------GGWLN---------RDTA----EWFAEYAAVVA-- 146 (427)
T ss_pred HHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc---------CCCCC---------hHHH----HHHHHHHHHHH--
Confidence 334455699999999999999766555577776541 33422 1112 36777666555
Q ss_pred HHHHhCCCCcccccCCCCCCC------------CCCCC-c--h-----HHHHHHHHHHHHHHccCCCc
Q 006843 145 QILEYGDVTDIYNCDTFNENT------------PPTND-T--N-----YISSLGAAVYKAMSEGDKDA 192 (629)
Q Consensus 145 q~~~yG~~~h~Y~~D~FnE~~------------pp~~d-~--~-----~L~~~~~~i~~am~~~dP~A 192 (629)
+.||+--+++ =+|||.. ||... . . .+-.+..++++.+++.+|++
T Consensus 147 --~~~~d~v~~w--~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~ 210 (427)
T TIGR03356 147 --ERLGDRVKHW--ITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGA 210 (427)
T ss_pred --HHhCCcCCEE--EEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6788733555 4889864 33211 1 1 23345556678888888864
No 44
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=21.04 E-value=2.7e+02 Score=25.36 Aligned_cols=48 Identities=19% Similarity=0.379 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccCCCCchH
Q 006843 449 SKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLG 498 (629)
Q Consensus 449 ~n~~~~~~~~~~~Ay~~~d~~~~~~~~~~~l~li~dlD~LL~t~~~flLg 498 (629)
++.+..++..+..-..+++.. +...+.+.+.+..||..|+.+..|++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~Le~~L~~~~~fl~G 55 (121)
T cd03201 8 ASVGSKIFSTFVGFLKSKDSN--DGTEQALLDELEALEDHLKENGPFING 55 (121)
T ss_pred HHHHHHHHHHHHHHHHCCcHH--HHHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 345566666666666666654 556677888888899988754456666
No 45
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=20.91 E-value=98 Score=32.50 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=18.8
Q ss_pred HHHHHHHcCCe-eCcCCCCCCCchh
Q 006843 73 IVSRMLELGMT-PVLPSFAGNVPAA 96 (629)
Q Consensus 73 Il~RmreLGM~-PVLPgF~G~VP~~ 96 (629)
.++++|+.|++ ||+||+.+..-..
T Consensus 175 ~~~~~~~~gi~~PIi~Gi~p~~s~k 199 (272)
T TIGR00676 175 FVDRCRAAGIDVPIIPGIMPITNFK 199 (272)
T ss_pred HHHHHHHcCCCCCEecccCCcCCHH
Confidence 47889999876 8888888766655
No 46
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=20.41 E-value=50 Score=36.95 Aligned_cols=99 Identities=19% Similarity=0.257 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHH
Q 006843 69 LQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILE 148 (629)
Q Consensus 69 LqkkIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~ 148 (629)
.-++.+..+.+.|..||+|||.|.-+.. .++..| +. -.|-....||+..=.+.-..
T Consensus 156 ~~~~~l~~~l~~~~vpVv~G~~g~~~~g--------~~~~lg----rg------------gsD~~A~~lA~~l~a~~l~~ 211 (441)
T TIGR00657 156 ILTERLEPLLEEGIIPVVAGFQGATEKG--------ETTTLG----RG------------GSDYTAALLAAALKADECEI 211 (441)
T ss_pred hhHHHHHHHHhcCCEEEEeCcEeeCCCC--------CEeecC----CC------------chHHHHHHHHHHcCCCEEEE
Confidence 3445566677789999999998864331 111111 11 23446666666543333334
Q ss_pred hCCCCcccccCCCC-CCCCCCCCchHHHHHHHHHHHHHHccCCCc
Q 006843 149 YGDVTDIYNCDTFN-ENTPPTNDTNYISSLGAAVYKAMSEGDKDA 192 (629)
Q Consensus 149 yG~~~h~Y~~D~Fn-E~~pp~~d~~~L~~~~~~i~~am~~~dP~A 192 (629)
+=+|+.+|.+||=. ...-+-....| ..+.+-++..++-.+|.|
T Consensus 212 ~tDV~Gv~~~DP~~~~~a~~i~~is~-~ea~el~~~G~~v~~~~a 255 (441)
T TIGR00657 212 YTDVDGIYTTDPRIVPDARRIDEISY-EEMLELASFGAKVLHPRT 255 (441)
T ss_pred EECCCCCCcCCCCCCCCCeECCccCH-HHHHHHHhcCCcccCHHH
Confidence 55667899999832 11111122222 334444444555555555
No 47
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=20.20 E-value=1.5e+02 Score=25.62 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=34.3
Q ss_pred HHHhCCCCcccccCCCCC-CCCC-----C--C--CchHHHHHHHHHHHHHHccCCCceEEEecc
Q 006843 146 ILEYGDVTDIYNCDTFNE-NTPP-----T--N--DTNYISSLGAAVYKAMSEGDKDAVWLMQGW 199 (629)
Q Consensus 146 ~~~yG~~~h~Y~~D~FnE-~~pp-----~--~--d~~~L~~~~~~i~~am~~~dP~AvWvmQgW 199 (629)
.+.||....+=.-|.+|| -.+. . + ....+...-+.+.+.|+++||..- |.-|.
T Consensus 2 v~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~p-vt~g~ 64 (88)
T PF12876_consen 2 VTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQP-VTSGF 64 (88)
T ss_dssp HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS--EE--B
T ss_pred chhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCc-EEeec
Confidence 356888678889999999 3311 1 1 234677888999999999999887 55553
No 48
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=20.11 E-value=67 Score=21.34 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHcCCee
Q 006843 66 QLVLQKKIVSRMLELGMTP 84 (629)
Q Consensus 66 q~~LqkkIl~RmreLGM~P 84 (629)
+.+-..+++++|++.|+.|
T Consensus 15 ~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 15 RVEEALELFKEMLERGIEP 33 (35)
T ss_pred CHHHHHHHHHHHHHcCCCC
Confidence 4566789999999999887
Done!