Query 006845
Match_columns 629
No_of_seqs 233 out of 1569
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 15:19:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 4E-140 8E-145 1192.9 52.1 568 1-621 36-720 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 1E-121 2E-126 1006.3 49.7 584 1-625 26-637 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.9E-94 4E-99 762.0 22.9 318 1-328 1-319 (319)
4 COG1874 LacA Beta-galactosidas 100.0 5.3E-44 1.1E-48 402.5 9.0 545 1-613 7-591 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.9 1.4E-22 3E-27 219.3 12.5 139 15-169 1-161 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.2 2.9E-10 6.2E-15 119.6 18.0 140 1-175 7-152 (298)
7 PRK10150 beta-D-glucuronidase; 99.1 1.9E-08 4E-13 116.0 25.4 142 1-171 284-439 (604)
8 PF00150 Cellulase: Cellulase 99.1 2.6E-09 5.6E-14 109.7 16.2 157 4-182 3-172 (281)
9 PF13364 BetaGal_dom4_5: Beta- 98.9 3.7E-09 7.9E-14 95.8 7.3 63 533-606 33-100 (111)
10 COG3250 LacZ Beta-galactosidas 98.7 2.1E-07 4.5E-12 109.4 13.9 112 1-153 292-409 (808)
11 PRK10340 ebgA cryptic beta-D-g 98.6 4.2E-07 9E-12 110.4 15.4 135 1-171 326-466 (1021)
12 PRK09525 lacZ beta-D-galactosi 98.6 4.8E-07 1E-11 109.8 15.1 131 1-170 342-478 (1027)
13 smart00633 Glyco_10 Glycosyl h 98.5 3.1E-06 6.7E-11 87.3 16.4 113 47-184 3-127 (254)
14 PF13364 BetaGal_dom4_5: Beta- 98.3 3.7E-06 8E-11 76.2 9.8 78 375-462 25-110 (111)
15 PF13204 DUF4038: Protein of u 98.2 8.5E-05 1.8E-09 78.3 18.7 233 4-265 8-274 (289)
16 PLN02161 beta-amylase 98.1 6.6E-06 1.4E-10 90.6 8.9 83 23-109 116-207 (531)
17 TIGR03356 BGL beta-galactosida 98.1 3.4E-06 7.3E-11 93.5 6.8 97 23-132 53-150 (427)
18 PLN02803 beta-amylase 98.1 9.2E-06 2E-10 90.0 9.5 83 23-109 106-197 (548)
19 PLN02705 beta-amylase 98.1 1.2E-05 2.7E-10 89.8 9.9 119 23-148 267-415 (681)
20 PLN00197 beta-amylase; Provisi 98.1 1.3E-05 2.9E-10 89.0 9.8 82 23-109 126-217 (573)
21 PLN02905 beta-amylase 98.1 1.7E-05 3.7E-10 88.9 10.1 119 23-148 285-433 (702)
22 PLN02801 beta-amylase 98.0 2.2E-05 4.8E-10 86.7 10.1 119 23-148 36-184 (517)
23 PF00331 Glyco_hydro_10: Glyco 98.0 8.2E-05 1.8E-09 79.5 13.8 273 11-324 11-319 (320)
24 PF03198 Glyco_hydro_72: Gluca 98.0 8.3E-05 1.8E-09 78.3 12.6 194 4-236 22-248 (314)
25 PF01373 Glyco_hydro_14: Glyco 97.8 2.2E-05 4.8E-10 85.1 4.5 114 25-147 17-152 (402)
26 PRK09852 cryptic 6-phospho-bet 97.4 0.00014 3.1E-09 81.6 5.4 113 23-143 70-184 (474)
27 PF02837 Glyco_hydro_2_N: Glyc 97.4 0.00046 1E-08 66.0 8.1 93 381-482 64-164 (167)
28 PLN02998 beta-glucosidase 97.4 0.00023 4.9E-09 80.5 6.0 112 23-142 81-193 (497)
29 PLN02814 beta-glucosidase 97.3 0.0003 6.5E-09 79.6 6.0 111 23-141 76-187 (504)
30 PF14488 DUF4434: Domain of un 97.3 0.0053 1.2E-07 59.7 13.3 128 19-171 15-151 (166)
31 PF00232 Glyco_hydro_1: Glycos 97.3 0.00015 3.3E-09 81.1 3.0 110 23-152 57-168 (455)
32 PRK09593 arb 6-phospho-beta-gl 97.3 0.00043 9.3E-09 78.0 6.4 111 23-141 72-184 (478)
33 COG3693 XynA Beta-1,4-xylanase 97.2 0.0035 7.6E-08 66.1 12.5 124 38-184 58-195 (345)
34 PRK15014 6-phospho-beta-glucos 97.2 0.00059 1.3E-08 76.8 7.4 110 24-141 69-180 (477)
35 PRK09589 celA 6-phospho-beta-g 97.2 0.00042 9.2E-09 78.0 6.1 112 23-142 66-179 (476)
36 PLN02849 beta-glucosidase 97.2 0.00053 1.2E-08 77.6 5.9 113 23-143 78-191 (503)
37 TIGR01233 lacG 6-phospho-beta- 97.0 0.0016 3.4E-08 73.3 7.9 97 23-128 52-149 (467)
38 PRK13511 6-phospho-beta-galact 97.0 0.0015 3.2E-08 73.5 7.4 98 23-129 53-151 (469)
39 PF07745 Glyco_hydro_53: Glyco 97.0 0.0021 4.6E-08 69.0 8.1 103 27-152 27-136 (332)
40 COG2730 BglC Endoglucanase [Ca 97.0 0.0034 7.3E-08 69.4 9.9 114 23-153 67-193 (407)
41 COG2723 BglB Beta-glucosidase/ 96.4 0.0041 8.8E-08 69.0 5.7 104 23-134 58-163 (460)
42 COG3867 Arabinogalactan endo-1 95.8 0.045 9.8E-07 57.3 9.1 112 27-153 66-183 (403)
43 PF02638 DUF187: Glycosyl hydr 95.2 0.065 1.4E-06 57.3 8.2 118 22-148 17-161 (311)
44 PF14871 GHL6: Hypothetical gl 94.7 0.17 3.8E-06 47.4 8.7 98 28-131 4-123 (132)
45 PRK10150 beta-D-glucuronidase; 93.8 0.26 5.6E-06 57.3 9.7 91 383-482 63-177 (604)
46 smart00642 Aamy Alpha-amylase 93.1 0.27 5.8E-06 47.8 7.0 63 23-85 18-92 (166)
47 PF01229 Glyco_hydro_39: Glyco 93.1 0.15 3.3E-06 57.7 6.2 138 17-170 32-189 (486)
48 COG1649 Uncharacterized protei 92.8 0.54 1.2E-05 52.1 9.4 138 22-170 62-227 (418)
49 TIGR01515 branching_enzym alph 92.0 2.5 5.5E-05 49.4 14.4 57 27-83 159-226 (613)
50 COG3934 Endo-beta-mannanase [C 91.7 0.11 2.3E-06 57.7 2.5 155 2-169 4-168 (587)
51 PRK09936 hypothetical protein; 91.6 2.7 5.9E-05 44.4 12.5 58 19-82 33-91 (296)
52 PRK10340 ebgA cryptic beta-D-g 91.3 0.65 1.4E-05 57.3 9.0 89 384-484 108-206 (1021)
53 PRK09525 lacZ beta-D-galactosi 91.1 0.7 1.5E-05 57.1 8.8 87 384-482 119-216 (1027)
54 TIGR00542 hxl6Piso_put hexulos 90.5 5.7 0.00012 41.2 14.0 128 23-178 15-151 (279)
55 PF13200 DUF4015: Putative gly 90.4 0.77 1.7E-05 49.2 7.4 62 22-83 11-81 (316)
56 PF02837 Glyco_hydro_2_N: Glyc 90.2 0.46 1E-05 45.3 5.1 67 533-608 66-134 (167)
57 PRK09441 cytoplasmic alpha-amy 90.1 0.53 1.1E-05 53.2 6.2 68 16-83 7-101 (479)
58 KOG0496 Beta-galactosidase [Ca 90.0 0.12 2.6E-06 59.3 1.0 31 297-329 300-330 (649)
59 PRK01060 endonuclease IV; Prov 89.1 5.7 0.00012 41.1 12.7 93 26-146 14-109 (281)
60 PF05913 DUF871: Bacterial pro 89.1 0.53 1.1E-05 51.3 5.0 72 12-89 2-73 (357)
61 PRK05402 glycogen branching en 88.7 6.8 0.00015 46.8 14.4 50 30-82 272-334 (726)
62 KOG0626 Beta-glucosidase, lact 88.7 0.97 2.1E-05 51.2 6.8 113 25-145 92-207 (524)
63 PF01261 AP_endonuc_2: Xylose 88.6 1.4 3.1E-05 42.7 7.3 125 30-181 1-133 (213)
64 TIGR03234 OH-pyruv-isom hydrox 88.2 9.4 0.0002 38.9 13.4 44 25-82 15-58 (254)
65 PRK14706 glycogen branching en 87.7 11 0.00023 44.5 14.8 53 30-82 174-236 (639)
66 KOG2230 Predicted beta-mannosi 87.2 2.2 4.7E-05 48.6 8.2 110 2-150 330-444 (867)
67 PRK13210 putative L-xylulose 5 87.0 8.3 0.00018 39.8 12.3 129 24-178 16-151 (284)
68 PLN02447 1,4-alpha-glucan-bran 86.9 1.5 3.3E-05 52.2 7.2 60 23-83 250-320 (758)
69 PF00128 Alpha-amylase: Alpha 84.6 1 2.2E-05 46.3 4.1 56 27-82 7-71 (316)
70 TIGR02402 trehalose_TreZ malto 84.5 1.8 3.8E-05 49.9 6.2 53 27-82 114-179 (542)
71 smart00812 Alpha_L_fucos Alpha 83.3 9.1 0.0002 42.3 10.9 107 18-134 78-192 (384)
72 TIGR02104 pulA_typeI pullulana 82.4 2.4 5.3E-05 49.4 6.3 55 28-83 168-249 (605)
73 cd06593 GH31_xylosidase_YicI Y 82.3 3.2 6.9E-05 44.1 6.7 69 21-89 21-92 (308)
74 PLN02960 alpha-amylase 81.2 3.3 7E-05 50.0 6.8 57 27-83 420-486 (897)
75 PRK09505 malS alpha-amylase; R 80.6 3.5 7.6E-05 48.8 6.8 58 26-83 232-312 (683)
76 PRK09856 fructoselysine 3-epim 80.5 48 0.001 34.0 14.6 127 24-176 13-145 (275)
77 PRK12313 glycogen branching en 80.1 3.4 7.4E-05 48.5 6.5 53 30-82 177-239 (633)
78 PF03659 Glyco_hydro_71: Glyco 80.0 8.1 0.00018 42.7 9.0 54 21-83 14-67 (386)
79 cd00019 AP2Ec AP endonuclease 79.2 50 0.0011 34.2 14.3 100 21-149 8-108 (279)
80 TIGR02403 trehalose_treC alpha 79.1 3.1 6.8E-05 47.9 5.7 59 23-83 26-95 (543)
81 cd06602 GH31_MGAM_SI_GAA This 78.6 23 0.00049 38.4 11.9 74 16-90 13-93 (339)
82 PRK12568 glycogen branching en 78.6 5 0.00011 47.8 7.2 57 27-85 273-341 (730)
83 PF02679 ComA: (2R)-phospho-3- 78.4 2.5 5.5E-05 43.7 4.2 52 23-84 83-134 (244)
84 PRK10785 maltodextrin glucosid 78.3 4.5 9.8E-05 47.2 6.8 57 26-82 181-245 (598)
85 TIGR02456 treS_nterm trehalose 78.0 4.8 0.0001 46.3 6.8 56 24-82 28-95 (539)
86 cd06595 GH31_xylosidase_XylS-l 77.3 10 0.00022 40.1 8.6 64 22-85 23-96 (292)
87 COG0296 GlgB 1,4-alpha-glucan 77.2 4.4 9.5E-05 47.3 6.1 56 23-82 164-233 (628)
88 PRK13209 L-xylulose 5-phosphat 77.2 36 0.00078 35.2 12.6 97 24-145 21-118 (283)
89 PRK09997 hydroxypyruvate isome 77.1 41 0.00088 34.5 12.8 49 16-81 10-58 (258)
90 PLN02361 alpha-amylase 76.8 6 0.00013 44.0 6.8 57 27-83 32-96 (401)
91 smart00518 AP2Ec AP endonuclea 76.6 42 0.00091 34.5 12.8 101 14-146 3-104 (273)
92 cd06592 GH31_glucosidase_KIAA1 76.1 7.8 0.00017 41.2 7.3 67 19-88 25-95 (303)
93 cd06565 GH20_GcnA-like Glycosy 75.8 56 0.0012 34.8 13.7 106 22-132 15-131 (301)
94 PRK10933 trehalose-6-phosphate 75.1 6.7 0.00014 45.4 6.9 56 25-83 34-101 (551)
95 PRK09989 hypothetical protein; 75.1 46 0.001 34.0 12.5 44 25-82 16-59 (258)
96 PRK14705 glycogen branching en 74.7 6 0.00013 49.7 6.7 55 28-82 770-834 (1224)
97 cd06591 GH31_xylosidase_XylS X 74.7 6.7 0.00015 42.0 6.4 65 22-87 22-90 (319)
98 PF02065 Melibiase: Melibiase; 73.4 22 0.00049 39.4 10.2 114 16-130 50-181 (394)
99 cd04908 ACT_Bt0572_1 N-termina 73.3 12 0.00026 30.0 6.2 55 23-81 12-66 (66)
100 TIGR02631 xylA_Arthro xylose i 72.7 44 0.00095 36.9 12.2 100 22-145 30-134 (382)
101 PF01261 AP_endonuc_2: Xylose 71.6 21 0.00046 34.3 8.7 120 24-170 27-153 (213)
102 PRK14582 pgaB outer membrane N 71.4 12 0.00025 44.4 7.8 126 8-151 313-468 (671)
103 cd06599 GH31_glycosidase_Aec37 71.1 12 0.00026 40.0 7.4 66 23-88 28-98 (317)
104 cd06563 GH20_chitobiase-like T 70.8 70 0.0015 34.8 13.2 63 21-83 15-106 (357)
105 TIGR02100 glgX_debranch glycog 70.8 6.6 0.00014 46.6 5.7 54 29-82 189-264 (688)
106 cd06589 GH31 The enzymes of gl 70.1 10 0.00023 39.3 6.4 65 22-87 22-90 (265)
107 cd06603 GH31_GANC_GANAB_alpha 68.8 11 0.00023 40.8 6.3 68 22-90 22-91 (339)
108 TIGR03849 arch_ComA phosphosul 68.2 11 0.00025 38.8 6.0 53 23-85 70-122 (237)
109 cd06598 GH31_transferase_CtsZ 68.0 12 0.00027 39.9 6.6 67 22-88 22-95 (317)
110 COG3589 Uncharacterized conser 67.9 9.5 0.00021 41.1 5.5 73 11-90 3-76 (360)
111 TIGR01531 glyc_debranch glycog 67.7 18 0.00039 46.0 8.5 100 16-122 122-238 (1464)
112 PF13199 Glyco_hydro_66: Glyco 67.1 10 0.00022 43.9 6.0 79 23-103 117-212 (559)
113 PLN00196 alpha-amylase; Provis 67.0 16 0.00034 41.0 7.4 57 27-83 47-112 (428)
114 cd06600 GH31_MGAM-like This fa 66.5 12 0.00027 39.9 6.2 73 16-89 13-90 (317)
115 PRK14510 putative bifunctional 66.0 9.7 0.00021 48.2 6.0 55 28-82 191-266 (1221)
116 TIGR02401 trehalose_TreY malto 65.9 14 0.00031 44.5 7.1 65 21-85 13-87 (825)
117 PRK14511 maltooligosyl trehalo 65.6 20 0.00042 43.7 8.1 61 21-85 17-91 (879)
118 cd06568 GH20_SpHex_like A subg 64.8 92 0.002 33.6 12.5 62 21-82 15-94 (329)
119 cd02742 GH20_hexosaminidase Be 64.8 59 0.0013 34.5 10.9 60 21-83 13-92 (303)
120 PRK14507 putative bifunctional 64.3 15 0.00032 47.7 7.2 65 21-85 755-829 (1693)
121 TIGR02102 pullulan_Gpos pullul 63.6 13 0.00027 46.5 6.2 22 62-83 554-575 (1111)
122 cd06564 GH20_DspB_LnbB-like Gl 63.3 75 0.0016 34.1 11.5 67 14-82 9-101 (326)
123 TIGR02103 pullul_strch alpha-1 63.0 13 0.00028 45.5 6.0 20 63-82 404-423 (898)
124 PRK03705 glycogen debranching 62.3 12 0.00027 44.1 5.7 54 29-82 184-261 (658)
125 cd06547 GH85_ENGase Endo-beta- 61.6 20 0.00044 38.9 6.8 114 40-181 32-149 (339)
126 PF02055 Glyco_hydro_30: O-Gly 61.4 32 0.0007 39.3 8.6 160 8-183 75-281 (496)
127 TIGR00677 fadh2_euk methylenet 61.1 24 0.00051 37.3 7.0 110 10-134 130-252 (281)
128 COG3623 SgaU Putative L-xylulo 60.5 40 0.00087 34.8 8.1 118 23-169 17-142 (287)
129 PF14307 Glyco_tran_WbsX: Glyc 60.1 1.7E+02 0.0037 31.7 13.6 132 22-180 56-195 (345)
130 cd06601 GH31_lyase_GLase GLase 59.9 22 0.00048 38.4 6.7 72 16-88 13-89 (332)
131 PRK12677 xylose isomerase; Pro 59.9 1.5E+02 0.0032 32.9 13.2 93 23-134 30-126 (384)
132 COG1306 Uncharacterized conser 59.2 20 0.00044 38.1 5.9 61 23-83 76-144 (400)
133 smart00518 AP2Ec AP endonuclea 57.4 1.3E+02 0.0028 30.9 11.7 75 8-84 26-106 (273)
134 PRK09875 putative hydrolase; P 57.1 63 0.0014 34.4 9.4 63 23-102 33-95 (292)
135 PLN02877 alpha-amylase/limit d 57.0 20 0.00044 44.0 6.3 20 63-82 466-485 (970)
136 cd06604 GH31_glucosidase_II_Ma 56.9 24 0.00051 38.1 6.3 66 22-88 22-89 (339)
137 COG2159 Predicted metal-depend 56.6 93 0.002 33.0 10.6 67 11-86 100-167 (293)
138 PRK00042 tpiA triosephosphate 55.4 73 0.0016 33.1 9.3 91 30-131 79-196 (250)
139 smart00481 POLIIIAc DNA polyme 54.4 38 0.00082 27.2 5.7 45 25-82 16-60 (67)
140 PLN02784 alpha-amylase 53.7 35 0.00075 41.5 7.4 57 27-83 524-588 (894)
141 cd06562 GH20_HexA_HexB-like Be 52.8 2.6E+02 0.0056 30.4 13.5 62 21-82 15-89 (348)
142 COG0366 AmyA Glycosidases [Car 52.0 20 0.00043 40.0 5.0 55 28-82 33-96 (505)
143 PF14587 Glyco_hydr_30_2: O-Gl 52.0 94 0.002 34.4 9.8 137 34-184 57-228 (384)
144 PF01791 DeoC: DeoC/LacD famil 51.6 4 8.8E-05 41.6 -0.6 58 27-89 79-136 (236)
145 PF14307 Glyco_tran_WbsX: Glyc 51.3 1.4E+02 0.0031 32.3 11.2 39 2-43 154-194 (345)
146 PRK09856 fructoselysine 3-epim 51.3 24 0.00052 36.3 5.1 58 25-83 91-149 (275)
147 PRK09267 flavodoxin FldA; Vali 51.0 92 0.002 29.7 8.8 74 6-82 46-119 (169)
148 PRK08227 autoinducer 2 aldolas 50.8 33 0.0007 36.1 5.9 78 29-133 99-176 (264)
149 KOG2024 Beta-Glucuronidase GUS 49.0 21 0.00046 37.3 4.1 47 371-417 68-127 (297)
150 TIGR02455 TreS_stutzeri trehal 47.9 49 0.0011 39.0 7.2 70 31-100 81-175 (688)
151 PF01055 Glyco_hydro_31: Glyco 47.9 30 0.00065 38.5 5.5 67 23-90 42-110 (441)
152 PF06832 BiPBP_C: Penicillin-B 47.8 26 0.00055 30.0 3.9 52 399-463 33-84 (89)
153 PRK14565 triosephosphate isome 47.5 70 0.0015 33.1 7.7 86 30-127 78-186 (237)
154 PRK13398 3-deoxy-7-phosphohept 47.2 1E+02 0.0023 32.3 9.0 74 3-83 22-98 (266)
155 PF04914 DltD_C: DltD C-termin 46.2 15 0.00032 34.5 2.2 28 63-91 36-63 (130)
156 cd00311 TIM Triosephosphate is 45.9 39 0.00084 35.0 5.5 49 30-84 77-125 (242)
157 cd06597 GH31_transferase_CtsY 45.3 50 0.0011 35.8 6.6 73 16-88 13-110 (340)
158 PRK12331 oxaloacetate decarbox 44.5 52 0.0011 37.2 6.7 55 16-82 88-142 (448)
159 PF13380 CoA_binding_2: CoA bi 44.3 54 0.0012 29.7 5.7 44 21-80 63-106 (116)
160 COG1082 IolE Sugar phosphate i 43.4 3.6E+02 0.0079 27.2 12.9 52 22-82 13-64 (274)
161 KOG1065 Maltase glucoamylase a 43.2 34 0.00074 41.0 5.1 69 16-89 300-377 (805)
162 COG1735 Php Predicted metal-de 43.1 96 0.0021 33.3 7.9 119 27-180 51-170 (316)
163 PRK13210 putative L-xylulose 5 42.5 40 0.00087 34.7 5.1 59 24-83 94-153 (284)
164 PRK09997 hydroxypyruvate isome 42.0 38 0.00082 34.7 4.8 60 24-83 85-144 (258)
165 cd01299 Met_dep_hydrolase_A Me 41.2 66 0.0014 34.1 6.7 59 23-82 119-179 (342)
166 TIGR02635 RhaI_grampos L-rhamn 41.0 4.5E+02 0.0098 29.1 13.1 87 23-134 39-128 (378)
167 cd06594 GH31_glucosidase_YihQ 40.9 90 0.002 33.4 7.6 67 22-88 21-96 (317)
168 PTZ00372 endonuclease 4-like p 40.9 4.7E+02 0.01 29.4 13.3 89 27-146 144-238 (413)
169 PF12876 Cellulase-like: Sugar 40.8 33 0.00071 29.4 3.5 44 137-180 6-62 (88)
170 COG1523 PulA Type II secretory 40.7 41 0.00089 40.1 5.3 53 30-82 206-284 (697)
171 PRK12858 tagatose 1,6-diphosph 40.7 33 0.00071 37.4 4.2 64 16-82 99-162 (340)
172 cd06570 GH20_chitobiase-like_1 40.4 4.9E+02 0.011 27.9 13.6 62 21-82 15-87 (311)
173 TIGR00587 nfo apurinic endonuc 39.9 2.4E+02 0.0052 29.3 10.5 86 26-134 13-100 (274)
174 COG0156 BioF 7-keto-8-aminopel 38.8 25 0.00054 39.0 3.0 61 12-82 143-207 (388)
175 PRK10658 putative alpha-glucos 38.7 88 0.0019 37.2 7.7 67 21-88 280-350 (665)
176 PF10566 Glyco_hydro_97: Glyco 38.6 89 0.0019 33.0 6.9 61 21-82 29-92 (273)
177 TIGR02690 resist_ArsH arsenica 38.1 4.5E+02 0.0098 26.8 12.8 148 8-170 28-195 (219)
178 KOG0259 Tyrosine aminotransfer 38.0 37 0.00079 37.5 4.0 59 20-82 179-238 (447)
179 PLN02763 hydrolase, hydrolyzin 37.8 86 0.0019 38.9 7.5 74 16-90 190-268 (978)
180 PF08306 Glyco_hydro_98M: Glyc 37.1 39 0.00084 36.3 3.9 90 10-125 104-201 (324)
181 PRK08645 bifunctional homocyst 36.5 1.2E+02 0.0025 35.7 8.2 111 7-133 461-579 (612)
182 TIGR03234 OH-pyruv-isom hydrox 36.5 48 0.001 33.7 4.6 60 24-83 84-143 (254)
183 TIGR00433 bioB biotin syntheta 36.3 49 0.0011 34.5 4.7 52 27-82 123-177 (296)
184 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.2 99 0.0021 32.4 6.9 50 21-82 88-137 (275)
185 TIGR00676 fadh2 5,10-methylene 35.9 1.8E+02 0.004 30.3 8.8 109 9-133 125-247 (272)
186 KOG0470 1,4-alpha-glucan branc 35.9 38 0.00081 40.2 3.9 57 27-83 258-331 (757)
187 cd04882 ACT_Bt0572_2 C-termina 35.6 71 0.0015 24.7 4.5 55 23-79 10-64 (65)
188 PLN02561 triosephosphate isome 34.5 77 0.0017 33.1 5.6 49 30-84 81-129 (253)
189 PRK15492 triosephosphate isome 34.4 78 0.0017 33.1 5.7 49 30-84 87-135 (260)
190 PRK13209 L-xylulose 5-phosphat 34.3 2.5E+02 0.0053 28.9 9.5 105 21-154 54-163 (283)
191 TIGR00419 tim triosephosphate 34.1 73 0.0016 32.2 5.2 44 30-83 74-117 (205)
192 PF01120 Alpha_L_fucos: Alpha- 34.0 2.2E+02 0.0047 30.9 9.3 144 21-180 91-243 (346)
193 cd07944 DRE_TIM_HOA_like 4-hyd 33.8 3.5E+02 0.0075 28.2 10.5 43 28-82 86-128 (266)
194 PF01075 Glyco_transf_9: Glyco 33.7 29 0.00064 34.8 2.4 74 9-85 108-194 (247)
195 cd06416 GH25_Lys1-like Lys-1 i 33.6 2.5E+02 0.0055 27.5 9.0 117 28-183 13-133 (196)
196 PF11324 DUF3126: Protein of u 33.2 97 0.0021 25.5 4.8 22 406-436 25-46 (63)
197 PTZ00372 endonuclease 4-like p 33.2 5.5E+02 0.012 28.8 12.3 81 4-85 153-241 (413)
198 PF14701 hDGE_amylase: glucano 32.9 75 0.0016 35.7 5.5 99 15-120 11-128 (423)
199 PRK06703 flavodoxin; Provision 32.2 2.7E+02 0.0058 25.9 8.5 96 8-132 50-148 (151)
200 TIGR02201 heptsyl_trn_III lipo 32.2 80 0.0017 33.7 5.5 66 20-85 196-271 (344)
201 cd00019 AP2Ec AP endonuclease 32.2 4.9E+02 0.011 26.7 11.3 102 23-154 44-148 (279)
202 COG5309 Exo-beta-1,3-glucanase 32.1 4E+02 0.0086 28.4 10.1 115 23-185 62-181 (305)
203 PRK10422 lipopolysaccharide co 32.1 99 0.0021 33.2 6.3 69 14-85 191-273 (352)
204 PTZ00333 triosephosphate isome 31.9 90 0.0019 32.6 5.6 49 30-84 82-130 (255)
205 cd07944 DRE_TIM_HOA_like 4-hyd 31.8 1.2E+02 0.0026 31.7 6.6 66 19-84 15-81 (266)
206 cd00537 MTHFR Methylenetetrahy 31.8 1.4E+02 0.003 31.0 7.2 103 16-133 139-250 (274)
207 PF00728 Glyco_hydro_20: Glyco 31.6 76 0.0016 33.9 5.3 62 21-82 15-92 (351)
208 PRK08673 3-deoxy-7-phosphohept 31.5 1.5E+02 0.0033 32.2 7.5 74 3-83 88-164 (335)
209 PRK09250 fructose-bisphosphate 31.3 1E+02 0.0022 33.7 6.1 81 30-133 152-235 (348)
210 PRK14040 oxaloacetate decarbox 31.3 96 0.0021 36.4 6.3 54 16-81 89-142 (593)
211 PRK01060 endonuclease IV; Prov 31.2 4.7E+02 0.01 26.7 11.0 63 21-84 44-111 (281)
212 TIGR00542 hxl6Piso_put hexulos 31.1 81 0.0018 32.6 5.3 55 25-83 95-153 (279)
213 PF03851 UvdE: UV-endonuclease 31.1 5.7E+02 0.012 27.1 11.4 118 28-170 49-172 (275)
214 PRK14567 triosephosphate isome 30.7 1E+02 0.0022 32.2 5.7 49 30-84 78-126 (253)
215 PRK14566 triosephosphate isome 30.5 95 0.002 32.6 5.5 49 30-84 88-136 (260)
216 PF08098 ATX_III: Anemonia sul 30.5 28 0.00061 23.3 1.0 15 613-628 3-23 (27)
217 cd03789 GT1_LPS_heptosyltransf 29.9 89 0.0019 32.2 5.3 75 12-89 127-213 (279)
218 PLN02429 triosephosphate isome 29.6 85 0.0018 33.9 5.1 49 30-84 140-188 (315)
219 PRK10426 alpha-glucosidase; Pr 29.1 1.2E+02 0.0026 35.8 6.8 67 23-89 220-295 (635)
220 PRK06852 aldolase; Validated 29.1 1.1E+02 0.0023 33.0 5.7 81 30-134 121-207 (304)
221 COG3684 LacD Tagatose-1,6-bisp 29.0 38 0.00082 35.5 2.2 52 29-83 116-167 (306)
222 cd06418 GH25_BacA-like BacA is 28.5 1.7E+02 0.0037 29.6 6.8 90 22-134 50-140 (212)
223 KOG1412 Aspartate aminotransfe 28.4 1.1E+02 0.0024 33.1 5.6 56 22-90 131-188 (410)
224 TIGR01698 PUNP purine nucleoti 28.2 88 0.0019 32.3 4.8 41 3-43 47-88 (237)
225 PF02126 PTE: Phosphotriestera 27.9 1.9E+02 0.004 31.1 7.4 59 27-102 41-99 (308)
226 PF07905 PucR: Purine cataboli 27.7 3E+02 0.0064 25.0 7.8 66 5-83 41-106 (123)
227 PRK10076 pyruvate formate lyas 27.2 3E+02 0.0065 27.8 8.4 124 23-178 53-211 (213)
228 cd06545 GH18_3CO4_chitinase Th 26.8 2.5E+02 0.0054 28.7 7.9 92 53-170 35-130 (253)
229 PRK11572 copper homeostasis pr 26.7 76 0.0016 33.1 4.0 62 11-82 60-121 (248)
230 COG0149 TpiA Triosephosphate i 25.6 1.3E+02 0.0029 31.4 5.5 49 30-84 81-129 (251)
231 COG5520 O-Glycosyl hydrolase [ 25.5 9.6E+02 0.021 26.6 13.8 111 35-170 77-204 (433)
232 TIGR03128 RuMP_HxlA 3-hexulose 25.1 1.6E+02 0.0034 29.0 5.9 41 29-82 68-108 (206)
233 COG1891 Uncharacterized protei 24.9 29 0.00062 34.3 0.5 67 10-82 117-186 (235)
234 TIGR03551 F420_cofH 7,8-dideme 24.7 59 0.0013 35.1 2.9 49 27-79 141-195 (343)
235 COG2360 Aat Leu/Phe-tRNA-prote 24.5 92 0.002 31.7 3.9 100 55-166 75-205 (221)
236 PF01183 Glyco_hydro_25: Glyco 24.4 6.3E+02 0.014 24.2 10.0 116 30-183 12-130 (181)
237 KOG0471 Alpha-amylase [Carbohy 24.1 1.2E+02 0.0026 35.2 5.4 63 27-89 43-114 (545)
238 PLN02389 biotin synthase 23.8 96 0.0021 34.3 4.4 50 27-79 178-229 (379)
239 PF07755 DUF1611: Protein of u 23.8 47 0.001 35.6 1.9 59 8-81 34-92 (301)
240 cd06416 GH25_Lys1-like Lys-1 i 23.8 2.5E+02 0.0054 27.6 7.0 87 13-102 55-156 (196)
241 PLN02231 alanine transaminase 23.7 2.5E+02 0.0053 32.5 7.9 59 20-82 252-310 (534)
242 cd02871 GH18_chitinase_D-like 23.6 4.7E+02 0.01 27.8 9.5 86 64-178 61-151 (312)
243 cd07393 MPP_DR1119 Deinococcus 23.2 6.8E+02 0.015 25.2 10.2 115 6-133 41-160 (232)
244 PF07691 PA14: PA14 domain; I 23.2 2.9E+02 0.0063 25.0 6.9 67 386-463 47-124 (145)
245 PRK10964 ADP-heptose:LPS hepto 23.1 1.6E+02 0.0034 31.1 5.8 76 7-85 178-264 (322)
246 TIGR03700 mena_SCO4494 putativ 23.1 61 0.0013 35.2 2.7 50 27-79 150-204 (351)
247 PF08308 PEGA: PEGA domain; I 23.0 1.2E+02 0.0025 24.6 3.8 22 401-431 3-24 (71)
248 smart00854 PGA_cap Bacterial c 22.8 7.9E+02 0.017 24.7 12.1 130 27-178 63-210 (239)
249 PF04909 Amidohydro_2: Amidohy 22.7 2.2E+02 0.0048 28.4 6.5 65 11-84 73-138 (273)
250 PRK12330 oxaloacetate decarbox 22.3 1.9E+02 0.0041 33.2 6.5 53 18-82 91-143 (499)
251 cd04886 ACT_ThrD-II-like C-ter 22.2 3.7E+02 0.0079 20.6 7.0 58 23-80 9-72 (73)
252 PRK09432 metF 5,10-methylenete 22.0 2.3E+02 0.0049 30.2 6.6 89 29-133 168-266 (296)
253 TIGR02195 heptsyl_trn_II lipop 22.0 1.9E+02 0.0041 30.6 6.1 80 6-85 173-262 (334)
254 PRK08195 4-hyroxy-2-oxovalerat 22.0 1.5E+02 0.0033 32.1 5.4 43 28-82 92-134 (337)
255 TIGR01108 oadA oxaloacetate de 22.0 2E+02 0.0043 33.8 6.6 53 18-82 85-137 (582)
256 PRK05265 pyridoxine 5'-phospha 21.7 2.1E+02 0.0045 29.7 5.9 49 23-89 112-161 (239)
257 KOG4039 Serine/threonine kinas 21.6 2.2E+02 0.0048 28.5 5.9 79 18-102 103-184 (238)
258 cd04883 ACT_AcuB C-terminal AC 21.5 2.7E+02 0.0058 22.0 5.6 56 23-80 12-69 (72)
259 PF01106 NifU: NifU-like domai 21.5 1.2E+02 0.0027 24.9 3.6 48 126-173 3-60 (68)
260 KOG0622 Ornithine decarboxylas 21.3 1.7E+02 0.0036 32.8 5.4 62 21-83 190-252 (448)
261 cd06167 LabA_like LabA_like pr 21.2 2E+02 0.0043 26.5 5.4 58 24-82 52-129 (149)
262 TIGR03217 4OH_2_O_val_ald 4-hy 20.9 1.7E+02 0.0036 31.8 5.4 43 27-81 90-132 (333)
263 PLN03231 putative alpha-galact 20.5 1.2E+03 0.025 25.8 12.5 67 21-90 15-115 (357)
264 PRK02308 uvsE putative UV dama 20.2 1.1E+03 0.023 25.2 12.7 98 30-149 54-156 (303)
265 TIGR02193 heptsyl_trn_I lipopo 20.2 2.3E+02 0.005 29.7 6.3 73 9-85 182-265 (319)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=3.7e-140 Score=1192.91 Aligned_cols=568 Identities=28% Similarity=0.460 Sum_probs=462.9
Q ss_pred CceeCCEeeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEE
Q 006845 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (629)
Q Consensus 1 ~f~~dG~~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vi 80 (629)
.|+|||+|++|+||++||||+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 36 ~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvi 115 (840)
T PLN03059 36 AFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVH 115 (840)
T ss_pred EEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhc--cccccCCCceEEEeeccccCCC----
Q 006845 81 LRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIA--PLLYDIGGPIVMVQIENEFGSY---- 154 (629)
Q Consensus 81 lrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~--~~~~~~ggpII~~QvENEyg~~---- 154 (629)
|||||||||||++||+|.||++ .|+|++|++||+|+++|++|+++|+++|+ ++++++||||||+|||||||+|
T Consensus 116 lRpGPYIcAEw~~GGlP~WL~~-~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~ 194 (840)
T PLN03059 116 LRIGPYICAEWNFGGFPVWLKY-VPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEI 194 (840)
T ss_pred ecCCcceeeeecCCCCchhhhc-CCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceeccc
Confidence 9999999999999999999997 69999999999999999999999999995 7899999999999999999998
Q ss_pred -CCcHHHHHHHHHHHHHhcCCceEEEEecCCCcccccCCCcCCCeeeeeecCCCCCCCchhHHHHHHhcCCCCCCCcccc
Q 006845 155 -GDDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSE 233 (629)
Q Consensus 155 -~~~~~y~~~l~~~~~~~~G~~v~l~t~dg~~~~~~~~g~~~~~~v~~t~~f~~~~~~~~~~~~~~~~~~~~~~P~~~~E 233 (629)
++|++||++|++++++ +|++|||||||+.. .++ +++.|+| + .....|.. ....+|+|++|
T Consensus 195 ~~~d~~Yl~~l~~~~~~-~Gi~VPl~t~dg~~-------~~~--~v~~t~N-g---~~~~~f~~-----~~~~~P~m~tE 255 (840)
T PLN03059 195 GAPGKAYTKWAADMAVK-LGTGVPWVMCKQED-------APD--PVIDTCN-G---FYCENFKP-----NKDYKPKMWTE 255 (840)
T ss_pred CcchHHHHHHHHHHHHH-cCCCcceEECCCCC-------CCc--cceecCC-C---chhhhccc-----CCCCCCcEEec
Confidence 6899999999999999 79999999999862 233 3888888 2 12223321 11236999999
Q ss_pred cccccccccCCCCccCChHHHHHHHHHHHhcCCc-eEEEEEEcCCCCCCCCCCCCCCCCCCCCCCccCcCCCCccccCCC
Q 006845 234 FYTGWLTHWGEKIAKTDADFTASYLEKILSQNGS-AVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGD 312 (629)
Q Consensus 234 ~~~Gwf~~Wg~~~~~~~~~~~~~~~~~~l~~~~s-~n~YM~hGGTNfG~~~G~~~~~~~~~~~~~~TSYDY~Apl~E~G~ 312 (629)
||+|||++||++++.+++++++..++++++.++| +|||||||||||||||||+. ++|||||||||+|+|+
T Consensus 256 ~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~---------~~TSYDYdAPL~E~G~ 326 (840)
T PLN03059 256 AWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPF---------IATSYDYDAPLDEYGL 326 (840)
T ss_pred cCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCc---------cccccccCCccccccC
Confidence 9999999999999999999999999999999999 69999999999999999872 6899999999999999
Q ss_pred CChHHHHHHHHHHHhhCCC--CCCCCCC-CC-----------c--------ccCcc---ceeec----------------
Q 006845 313 VDNPKFKAIRRVVEKFSPA--SLPSVLP-DN-----------E--------KAGFG---PIQLQ---------------- 351 (629)
Q Consensus 313 ~t~pKy~~lr~~i~~~~~~--~~~~~P~-~~-----------~--------~~~y~---~v~~~---------------- 351 (629)
+|+|||.+||++++.+... .++..++ .. + .++|+ .++++
T Consensus 327 ~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsil 406 (840)
T PLN03059 327 PREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSIL 406 (840)
T ss_pred cchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCceeEEECCcccccCccceeec
Confidence 9988999999999987322 2222222 11 1 34455 44444
Q ss_pred --cccchhhhhcc------c--CCC-------------cceecCCCcccccc-------CcccceEEEEEeecCCCC---
Q 006845 352 --KTALLFDLLDV------L--DPA-------------DVVESENPLSMESV-------GQMFGFLLYVSEFGGKDY--- 398 (629)
Q Consensus 352 --~~~~L~d~l~~------~--~~~-------------~~~~s~~P~~mE~l-------gq~~GyilYrt~~~~~~~--- 398 (629)
...+||+.+.+ + .+. ....++.|++||+| +|.+||+||+|+|.....
T Consensus 407 pd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~ 486 (840)
T PLN03059 407 PDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGF 486 (840)
T ss_pred ccccceeeeccccccccceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccc
Confidence 33456665553 1 111 11113349999999 999999999999976432
Q ss_pred -----CcceeecccccEEEEEECCCCCCCCCCCeEEEEEeccc-cceeEecc--cccCCccEEEEEEEecCccccCCCCC
Q 006845 399 -----GSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPN--FRCGSNISLFVLVENMGRVNYGPYMF 470 (629)
Q Consensus 399 -----~~~L~i~~~~D~a~V~vng~~~~~~~~~~~vG~l~~~~-~~~~~lp~--~~~~~~~~L~ILVEn~GRvNyG~~~~ 470 (629)
..+|+|.+++|+++||||| +++|++++.. +..++++. ....+.|+|+||||||||+|||++|+
T Consensus 487 ~~~~~~~~L~v~~~~d~~~vFVNg---------~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le 557 (840)
T PLN03059 487 LKTGQYPVLTIFSAGHALHVFING---------QLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFE 557 (840)
T ss_pred cccCCCceEEEcccCcEEEEEECC---------EEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccc
Confidence 2459999999999999999 9999998743 34566642 22236789999999999999999996
Q ss_pred C-CCCcccceEeCC-----EeecCeE-EEeecCCCCCCCCCcCcccccccccchhhhhhhhccccCCCCCCCceEEEEEE
Q 006845 471 D-EKGILSSVYLGG-----KVLRGWK-MIPVPFHNLNEVPKISPILEVAYSGLIKASARKKLEHNAGNITKEPAFYVGRF 543 (629)
Q Consensus 471 d-~KGI~g~V~L~g-----~~L~~Wk-~~~lpl~~~~~l~~~~~~~~~~~s~w~~~s~~~~~~~~~~~~~~~p~fYr~tF 543 (629)
+ +|||+|+|+|++ ++|++|+ +|+++|+.. .+ .+....+.....|.+.+ ......+|+|||++|
T Consensus 558 ~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE-~~-~i~~~~~~~~~~W~~~~--------~~~~~~p~twYK~~F 627 (840)
T PLN03059 558 TWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGE-AL-SLHTITGSSSVEWVEGS--------LLAQKQPLTWYKTTF 627 (840)
T ss_pred cccccccccEEEecccCCceecccCccccccCccce-ec-cccccCCCCCccccccc--------cccCCCCceEEEEEE
Confidence 4 999999999998 7899999 899999732 11 11111111233443211 112224599999999
Q ss_pred EecCCCCccc-eeEeeCCCceEEEEEcCcccccccCCCcc------------------ceeecccceEEE-eccccccCC
Q 006845 544 SIDKVNQVKD-TYLSFSGWGKGIAFVNEFNLGRFWPVKFF------------------LISYMQLSLIVY-CYGVVIGPF 603 (629)
Q Consensus 544 ~l~~~~~~~D-TfLd~sgwgKG~v~VNG~nlGRYWp~iGP------------------Q~~~~~~~~~~~-~p~~~l~~~ 603 (629)
++|.++ | |||||++|+||+|||||+||||||+.+.+ |+.|++|||++| ||++||+|+
T Consensus 628 d~p~g~---Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g 704 (840)
T PLN03059 628 DAPGGN---DPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPS 704 (840)
T ss_pred eCCCCC---CCEEEecccCCCeeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeEEEeCcHHHhccC
Confidence 998864 6 99999999999999999999999975322 355689999999 999999998
Q ss_pred ceeEEeecccCCCCCCCc
Q 006845 604 AVFWTSMRPLCPCSNPSS 621 (629)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~ 621 (629)
.+....-|... +||.+
T Consensus 705 ~N~lViFEe~g--g~p~~ 720 (840)
T PLN03059 705 GNLLIVFEEWG--GNPAG 720 (840)
T ss_pred CceEEEEEecC--CCCCc
Confidence 88755544433 35553
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-121 Score=1006.30 Aligned_cols=584 Identities=32% Similarity=0.485 Sum_probs=469.6
Q ss_pred CceeCCEeeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEE
Q 006845 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (629)
Q Consensus 1 ~f~~dG~~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vi 80 (629)
+|++||+|++++||++||+|++|++|+|+|+|+|++|+|+|+||||||.|||+||+|||+|+.||.+||++|+++||+||
T Consensus 26 ~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~ 105 (649)
T KOG0496|consen 26 SLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVI 105 (649)
T ss_pred ceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHHCCeEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCCCCcHHH
Q 006845 81 LRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEY 160 (629)
Q Consensus 81 lrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y 160 (629)
||+||||||||++||+|.||.. .|++.+|++|++|++++++|+++|++++++++++|||||||+||||||| .|
T Consensus 106 LRiGPyIcaEw~~GG~P~wL~~-~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG------~~ 178 (649)
T KOG0496|consen 106 LRIGPYICAEWNFGGLPWWLRN-VPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG------NY 178 (649)
T ss_pred ecCCCeEEecccCCCcchhhhh-CCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh------HH
Confidence 9999999999999999977766 7999999999999999999999999999999999999999999999999 68
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCCcccccCCCcC-CCeeeeeecCCCCCCCchhHHHHHHhcCCCCCCCcccccccccc
Q 006845 161 LHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIR-GDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWL 239 (629)
Q Consensus 161 ~~~l~~~~~~~~G~~v~l~t~dg~~~~~~~~g~~~-~~~v~~t~~f~~~~~~~~~~~~~~~~~~~~~~P~~~~E~~~Gwf 239 (629)
.+++++..+++++-++.++++++....-+.|+... .+.+ +|...+......| ++. ..+.+|+|++|+|+|||
T Consensus 179 ~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~---in~cng~~c~~~f--~~p--n~~~kP~~wtE~wtgwf 251 (649)
T KOG0496|consen 179 LRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPG---INTCNGFYCGDTF--KRP--NSPNKPLVWTENWTGWF 251 (649)
T ss_pred HHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCcc---ccccCCccchhhh--ccC--CCCCCCceecccccchh
Confidence 89999999999999999999988554444555443 2223 2322221122222 222 23467999999999999
Q ss_pred cccCCCCccCChHHHHHHHHHHHhcC-CceEEEEEEcCCCCCCCCC---CCCCCC------------CCCCCCCccCcCC
Q 006845 240 THWGEKIAKTDADFTASYLEKILSQN-GSAVLYMAHGGTNFGFYNG---ANTGNT------------ESDYQPDLTSYDY 303 (629)
Q Consensus 240 ~~Wg~~~~~~~~~~~~~~~~~~l~~~-~s~n~YM~hGGTNfG~~~G---~~~~~~------------~~~~~~~~TSYDY 303 (629)
++||++++.+++++++..+..+++.+ +++||||+|||||||++|| ++.-.. .+.+.+.+|||||
T Consensus 252 ~~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~dgl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 252 THWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLDGLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred hhhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccchhhcCCCccccccchhhhhh
Confidence 99999999999999999999999988 7799999999999999999 553110 1236688999999
Q ss_pred CCccccCCCCChHHHHHHH----HHHHhhCCCCCCCCCCCCcccCccceeeccccchhhhhcccCCCc--ceecCCCccc
Q 006845 304 DAPIKESGDVDNPKFKAIR----RVVEKFSPASLPSVLPDNEKAGFGPIQLQKTALLFDLLDVLDPAD--VVESENPLSM 377 (629)
Q Consensus 304 ~Apl~E~G~~t~pKy~~lr----~~i~~~~~~~~~~~P~~~~~~~y~~v~~~~~~~L~d~l~~~~~~~--~~~s~~P~~m 377 (629)
+||+.|+|+++-+||-++| .+|+.+.+.+.+.+|.+.++..++++.+.-.-++.+.+..+++.. ...+..|+++
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~~~~~~e~~~~ 411 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQWISFTEPIPS 411 (649)
T ss_pred cCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccccccccCCCcc
Confidence 9999999997777999999 889999989999999999999999988864433333332222211 3467899999
Q ss_pred cccCcccceEEEEEeecCCC-CCcceeec-ccccEEEEEECCCCCCCCCCCeEEEEEeccc-cceeEe--cccccCCccE
Q 006845 378 ESVGQMFGFLLYVSEFGGKD-YGSSLLIS-KVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSL--PNFRCGSNIS 452 (629)
Q Consensus 378 E~lgq~~GyilYrt~~~~~~-~~~~L~i~-~~~D~a~V~vng~~~~~~~~~~~vG~l~~~~-~~~~~l--p~~~~~~~~~ 452 (629)
|..+|.+|+++|++.+..+. ..+.|.|. +++|++|||||| +++|++++.. +.++.+ +.....+.|+
T Consensus 412 ~~~~~~~~~ll~~~~~t~d~sd~t~~~i~ls~g~~~hVfvNg---------~~~G~~~g~~~~~~~~~~~~~~l~~g~n~ 482 (649)
T KOG0496|consen 412 EAVGQSFGGLLEQTNLTKDKSDTTSLKIPLSLGHALHVFVNG---------EFAGSLHGNNEKIKLNLSQPVGLKAGENK 482 (649)
T ss_pred ccccCcceEEEEEEeeccccCCCceEeecccccceEEEEECC---------EEeeeEeccccceeEEeecccccccCcce
Confidence 99999999999999988753 34678899 999999999999 9999999843 344444 2222346799
Q ss_pred EEEEEEecCccccCCCCCCCCCcccceEeCCEeecCeEEEeecCCCCCCCCCcCcccccccccchhhhhhhhccccCCCC
Q 006845 453 LFVLVENMGRVNYGPYMFDEKGILSSVYLGGKVLRGWKMIPVPFHNLNEVPKISPILEVAYSGLIKASARKKLEHNAGNI 532 (629)
Q Consensus 453 L~ILVEn~GRvNyG~~~~d~KGI~g~V~L~g~~L~~Wk~~~lpl~~~~~l~~~~~~~~~~~s~w~~~s~~~~~~~~~~~~ 532 (629)
|+|||||+||+|||....+.|||+|+|+|+|..+.+|+..++.++-.++.-...........+|.+.+ ....
T Consensus 483 l~iL~~~~G~~n~G~~e~~~~Gi~g~v~l~g~~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~--------~~~~ 554 (649)
T KOG0496|consen 483 LALLSENVGLPNYGHFENDFKGILGPVYLNGLIDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLS--------NTAT 554 (649)
T ss_pred EEEEEEecCCCCcCcccccccccccceEEeeeeccceeecceecccccchhhccccccccccceeecc--------Cccc
Confidence 99999999999999444579999999999999666676655443221111011111122233444321 1222
Q ss_pred CCCceEEEEEEEecCCCCccceeEeeCCCceEEEEEcCcccccccCCCccceeecccceEEEeccccccCCceeEEeecc
Q 006845 533 TKEPAFYVGRFSIDKVNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPVKFFLISYMQLSLIVYCYGVVIGPFAVFWTSMRP 612 (629)
Q Consensus 533 ~~~p~fYr~tF~l~~~~~~~DTfLd~sgwgKG~v~VNG~nlGRYWp~iGPQ~~~~~~~~~~~~p~~~l~~~~~~~~~~~~ 612 (629)
+.+.+||+ +|++|++. .||||||+|||||+|||||+|||||||++|||++ +|||++||||+.+-...-|.
T Consensus 555 k~P~~w~k-~f~~p~g~--~~t~Ldm~g~GKG~vwVNG~niGRYW~~~G~Q~~-------yhvPr~~Lk~~~N~lvvfEe 624 (649)
T KOG0496|consen 555 KQPLTWYK-TFDIPSGS--EPTALDMNGWGKGQVWVNGQNIGRYWPSFGPQRT-------YHVPRSWLKPSGNLLVVFEE 624 (649)
T ss_pred CCCeEEEE-EecCCCCC--CCeEEecCCCcceEEEECCcccccccCCCCCceE-------EECcHHHhCcCCceEEEEEe
Confidence 33345666 99999875 6999999999999999999999999999999998 99999999998887554444
Q ss_pred cCCCCCCCccccc
Q 006845 613 LCPCSNPSSWGKS 625 (629)
Q Consensus 613 ~~~~~~~~~~~~~ 625 (629)
..++.+-+|+-+.
T Consensus 625 e~~~p~~i~~~~~ 637 (649)
T KOG0496|consen 625 EGGDPNGISFVTR 637 (649)
T ss_pred ccCCCccceEEEe
Confidence 4455555555443
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.9e-94 Score=761.96 Aligned_cols=318 Identities=50% Similarity=0.942 Sum_probs=255.0
Q ss_pred CceeCCEeeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEE
Q 006845 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (629)
Q Consensus 1 ~f~~dG~~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vi 80 (629)
+|+|||||++++|||+||+|+|+++|+|+|+||||+|||||++||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCCCCcHHH
Q 006845 81 LRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEY 160 (629)
Q Consensus 81 lrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y 160 (629)
|||||||||||++||+|.||++ .+++++|++||.|+++|++|+++|+++++++|+++||||||+|||||||.++++++|
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~-~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~~~~~~Y 159 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLR-KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSYGTDRAY 159 (319)
T ss_dssp EEEES---TTBGGGG--GGGGG-STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCTSS-HHH
T ss_pred ecccceecccccchhhhhhhhc-cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCCcccHhH
Confidence 9999999999999999999998 579999999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHhcCCc-eEEEEecCCCcccccCCCcCCCeeeeeecCCCCCCCchhHHHHHHhcCCCCCCCcccccccccc
Q 006845 161 LHHLVTLARAHLGKD-IILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWL 239 (629)
Q Consensus 161 ~~~l~~~~~~~~G~~-v~l~t~dg~~~~~~~~g~~~~~~v~~t~~f~~~~~~~~~~~~~~~~~~~~~~P~~~~E~~~Gwf 239 (629)
|+.|++++++ .|++ ++++|+|++......++.+++..++.+.+|++..++...|..++.+++ ++|.|++|||+|||
T Consensus 160 ~~~l~~~~~~-~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~P~~~~E~~~Gwf 236 (319)
T PF01301_consen 160 MEALKDAYRD-WGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQP--NQPLMCTEFWGGWF 236 (319)
T ss_dssp HHHHHHHHHH-TT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHT--TS--EEEEEESS--
T ss_pred HHHHHHHHHH-hhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCC--CCCeEEEEeccccc
Confidence 9999999999 5776 889999987766667788887679999999987544456655566544 56999999999999
Q ss_pred cccCCCCccCChHHHHHHHHHHHhcCCceEEEEEEcCCCCCCCCCCCCCCCCCCCCCCccCcCCCCccccCCCCChHHHH
Q 006845 240 THWGEKIAKTDADFTASYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFK 319 (629)
Q Consensus 240 ~~Wg~~~~~~~~~~~~~~~~~~l~~~~s~n~YM~hGGTNfG~~~G~~~~~~~~~~~~~~TSYDY~Apl~E~G~~t~pKy~ 319 (629)
++||.++..++++.++..++++++.++++||||+|||||||+++|++... +|++|||||+|||+|+|++|+ ||+
T Consensus 237 ~~WG~~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~~-----~p~~TSYDY~ApI~E~G~~~~-Ky~ 310 (319)
T PF01301_consen 237 DHWGGPHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYYG-----QPDITSYDYDAPIDEYGQLTP-KYY 310 (319)
T ss_dssp -BTTS--HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETTT-----EEB-SB--TT-SB-TTS-B-H-HHH
T ss_pred cccCCCCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCCC-----CCCcccCCcCCccCcCCCcCH-HHH
Confidence 99999998888999999999999999999999999999999999988532 689999999999999999995 999
Q ss_pred HHHHHHHhh
Q 006845 320 AIRRVVEKF 328 (629)
Q Consensus 320 ~lr~~i~~~ 328 (629)
+||+++++|
T Consensus 311 ~lr~l~~~~ 319 (319)
T PF01301_consen 311 ELRRLHQKY 319 (319)
T ss_dssp HHHHHHHT-
T ss_pred HHHHHHhcC
Confidence 999999876
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-44 Score=402.53 Aligned_cols=545 Identities=20% Similarity=0.202 Sum_probs=334.2
Q ss_pred CceeCCEeeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEE-eccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceE
Q 006845 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (629)
Q Consensus 1 ~f~~dG~~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~V 79 (629)
.|++||+|++++||++||+|||++.|.|||+|||++|+|+|++ |+.||.|||++|+|||+ .+|.. ||++|++.||+|
T Consensus 7 ~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~~~Gl~v 84 (673)
T COG1874 7 SFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAYKAGLYV 84 (673)
T ss_pred ceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHHhcCceE
Confidence 3789999999999999999999999999999999999999999 99999999999999999 68888 999999999999
Q ss_pred EecCCC-cccccccCCCCcccccccCCCeeec---------CCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeecc
Q 006845 80 MLRPGP-YICAEWDLGGFPAWLLAKKPALKLR---------SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (629)
Q Consensus 80 ilrpGP-yi~aEw~~GG~P~Wl~~~~p~~~~R---------~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvEN 149 (629)
|||||| ..|.+|..++.|+||.. ++...+| .+++.|++++++ |+++|+++.+++|++||+|||+|
T Consensus 85 il~t~P~g~~P~Wl~~~~PeiL~~-~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~irer~~~~~~~v~~w~~dn 159 (673)
T COG1874 85 ILRTGPTGAPPAWLAKKYPEILAV-DENGRVRSDGARENICPVSPVYREYLDR----ILQQIRERLYGNGPAVITWQNDN 159 (673)
T ss_pred EEecCCCCCCchHHhcCChhheEe-cCCCcccCCCcccccccccHHHHHHHHH----HHHHHHHHHhccCCceeEEEccC
Confidence 999999 99999999999999987 3443333 357788888887 66777777788999999999999
Q ss_pred ccCCCC-----CcHHHHHHHHHHHHHhcCCceEEEEecCCCcccccCCCcCCCeeeeeec-CCCCCCCchhHH-HHHHhc
Q 006845 150 EFGSYG-----DDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVD-FSTGAEPWPIFK-LQKQFN 222 (629)
Q Consensus 150 Eyg~~~-----~~~~y~~~l~~~~~~~~G~~v~l~t~dg~~~~~~~~g~~~~~~v~~t~~-f~~~~~~~~~~~-~~~~~~ 222 (629)
|||++. |++.+..||++.+-. +-+.+......+..++...-+...+.+ ++. ++.+... ...+|.
T Consensus 160 eY~~~~~~~~~~~~~f~~wLk~~yg~-------l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e--~~~~~~~ld~~~f~ 230 (673)
T COG1874 160 EYGGHPCYCDYCQAAFRLWLKKGYGS-------LDNLNEAWGTSFWSHTYKDFDEIMSPNPFGE--LPLPGLYLDYRRFE 230 (673)
T ss_pred ccCCccccccccHHHHHHHHHhCcch-------HHhhhhhhhhhhcccccccHHhhcCCCCccc--cCCccchhhHhhhh
Confidence 999843 566777777776632 222222222233344433211111222 222 1211110 112221
Q ss_pred C-CC-CCCCcccccccccc-cccCCCCccCC-hHHHHHHHHHHHhcCCceEEEEEEcCCCCC------CCCCCCCCC-CC
Q 006845 223 A-PG-KSPPLSSEFYTGWL-THWGEKIAKTD-ADFTASYLEKILSQNGSAVLYMAHGGTNFG------FYNGANTGN-TE 291 (629)
Q Consensus 223 ~-~~-~~P~~~~E~~~Gwf-~~Wg~~~~~~~-~~~~~~~~~~~l~~~~s~n~YM~hGGTNfG------~~~G~~~~~-~~ 291 (629)
. +. .-+..+.|.+-+|| +.|..+....+ .++-+..+++.+.....-|+||+|+|++|+ |.+|+.... ..
T Consensus 231 ~e~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~swdny~~~~~~~~~~~~~h~l~r~~~~~~~~~~ 310 (673)
T COG1874 231 SEQILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASWDNYPAWHRGRDFTKFIHDLFRNGKQGQPFWL 310 (673)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhhhhhhhhccccchhhhhHHHHHhhccCCceee
Confidence 1 00 12566788899999 88887766555 566666778888877778999999999999 888876110 11
Q ss_pred CCCCCCccCcCCCCccccCCCCChHHH--HHHHHHHHhhCCCCCCCCCCCCcccCccceeeccccchhhhhcccCCCcce
Q 006845 292 SDYQPDLTSYDYDAPIKESGDVDNPKF--KAIRRVVEKFSPASLPSVLPDNEKAGFGPIQLQKTALLFDLLDVLDPADVV 369 (629)
Q Consensus 292 ~~~~~~~TSYDY~Apl~E~G~~t~pKy--~~lr~~i~~~~~~~~~~~P~~~~~~~y~~v~~~~~~~L~d~l~~~~~~~~~ 369 (629)
....|..|++++.+.+.+.|...-+.+ .+...-.-.|.-....+-|...-.-.+-+=.+.+...+++....+.. ..
T Consensus 311 me~~P~~vn~~~~n~~~~~G~~~l~s~~~~A~g~~~v~yf~~r~s~~~~e~~h~~v~~~v~~~~~~~~~ev~~vg~--~l 388 (673)
T COG1874 311 MEQLPSVVNWALYNKLKRPGALRLPSLQAVAHGADNVIYFQWRQSPSPREKSHDGVISPVLSENTRLFREVAAVGE--EL 388 (673)
T ss_pred ccCCcchhhhhhccCCCCCccccccccccccccCceEEEEEeecCCChHhhccCcccccccCccccccchhhhhhH--hh
Confidence 123588999999999999999432222 12211111111111111111000000000001112233332221110 01
Q ss_pred ecCCCccccccCcccceEEEEEeecCCCCCcceeecccccEEEEEECCCCCCCCCCCeEEEEEeccc-cceeEecccccC
Q 006845 370 ESENPLSMESVGQMFGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCG 448 (629)
Q Consensus 370 ~s~~P~~mE~lgq~~GyilYrt~~~~~~~~~~L~i~~~~D~a~V~vng~~~~~~~~~~~vG~l~~~~-~~~~~lp~~~~~ 448 (629)
.+ .|.-||...+.+++++|..+..=.... ....+..++.|.+.-. ++.-.+-+.. +..+..+.....
T Consensus 389 ~~-~~~~~~~~~~a~va~~~d~E~~Wa~~~--~~~~~~~~~~Y~~~~~---------~~~~~l~~~~i~vdvi~~~~~~~ 456 (673)
T COG1874 389 KS-LPDVMEARVQAYVAILFDYESRWAFED--EDGGESSALRYPFGVL---------HLYEALIETGIPVDVILEGSELD 456 (673)
T ss_pred hc-cccccccccccceeEEeeccccccccc--ccccccccccchhhhh---------hhHHHHHhhCCceeEecCccccc
Confidence 11 113388889999999997665311001 1111122233332221 1111111100 111111111122
Q ss_pred CccEEEE---EEEecCccccCCCCCC-----CCCcccceEeCCEeecCeEEEeecCCCCCCCCCcCcccccccccchhhh
Q 006845 449 SNISLFV---LVENMGRVNYGPYMFD-----EKGILSSVYLGGKVLRGWKMIPVPFHNLNEVPKISPILEVAYSGLIKAS 520 (629)
Q Consensus 449 ~~~~L~I---LVEn~GRvNyG~~~~d-----~KGI~g~V~L~g~~L~~Wk~~~lpl~~~~~l~~~~~~~~~~~s~w~~~s 520 (629)
+-..|.+ .++++++++.+..+.+ ..|+..++......+..|.-.+.+.+. .+. |
T Consensus 457 ~y~~L~~p~l~~~~~~~~~r~~~f~~~gG~~v~g~~sG~~~e~~~~~~~~~~g~~~d~-i~~-------------~---- 518 (673)
T COG1874 457 GYKLLIVPVLYIVNSERVDRAKKFVENGGTLVLGPRSGIVNEHDFLVTGGYPGLLRDL-IGI-------------W---- 518 (673)
T ss_pred CceEEEEeeeeccchhhHhhHHHHHhcCCeEEEeeecccccchheeecCCCCcchHHh-cCc-------------c----
Confidence 3345555 8899999998765544 333444443333334445443333331 111 0
Q ss_pred hhhhccccCCCCCCCceEEEEEEEecCCCCccceeEeeCCCceEEEEEcCcccccccCCCccceeecccceEEEeccccc
Q 006845 521 ARKKLEHNAGNITKEPAFYVGRFSIDKVNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPVKFFLISYMQLSLIVYCYGVVI 600 (629)
Q Consensus 521 ~~~~~~~~~~~~~~~p~fYr~tF~l~~~~~~~DTfLd~sgwgKG~v~VNG~nlGRYWp~iGPQ~~~~~~~~~~~~p~~~l 600 (629)
.+...+.+.+.+-++.... .|++++++.|.+++-+.|+..||||| ..|++.. .+|++.|.
T Consensus 519 --------~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~l~~~~-~~~~~~~-------~~v~~~~~ 578 (673)
T COG1874 519 --------VGEVDQLPPNEVNVVVRNG----KDTTYGLKLWRATVDGEGGTVLARFR-EDGYAGG-------PAVTRRWY 578 (673)
T ss_pred --------cccccccChhHhhhheecc----CcceeccccceeeeeccCCeEEEEEe-ccCcCCC-------cccchhhh
Confidence 0111234556566665543 28999999999999999999999999 7999887 88999999
Q ss_pred cCCceeEEeeccc
Q 006845 601 GPFAVFWTSMRPL 613 (629)
Q Consensus 601 ~~~~~~~~~~~~~ 613 (629)
+-..+.....+..
T Consensus 579 ~~g~~~~l~~~~~ 591 (673)
T COG1874 579 GGGKAYYLGFRTS 591 (673)
T ss_pred cCcceeEEEeccC
Confidence 8877775554443
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.88 E-value=1.4e-22 Score=219.29 Aligned_cols=139 Identities=27% Similarity=0.380 Sum_probs=109.1
Q ss_pred EecCCCCCHhHHHHHHHHHHHcCCCEEEE-eccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccC
Q 006845 15 DLHYFRILPQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDL 93 (629)
Q Consensus 15 ~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~ 93 (629)
++++..+|++.|+++|++||++|||+|++ .+.|+.+||+||+|||+. ||++|++|+++||+|||+. ..
T Consensus 1 dy~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~---lD~~l~~a~~~Gi~viL~~--------~~ 69 (374)
T PF02449_consen 1 DYYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSW---LDRVLDLAAKHGIKVILGT--------PT 69 (374)
T ss_dssp E--GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HH---HHHHHHHHHCTT-EEEEEE--------CT
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHH---HHHHHHHHHhccCeEEEEe--------cc
Confidence 35677899999999999999999999996 678999999999999999 9999999999999999994 36
Q ss_pred CCCcccccccCCCeeec----------------CCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCC---C
Q 006845 94 GGFPAWLLAKKPALKLR----------------SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS---Y 154 (629)
Q Consensus 94 GG~P~Wl~~~~p~~~~R----------------~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~---~ 154 (629)
...|.||.+++|++... .++|.|++++++++++|+++++. .+.||+|||+||++. |
T Consensus 70 ~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-----~p~vi~~~i~NE~~~~~~~ 144 (374)
T PF02449_consen 70 AAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-----HPAVIGWQIDNEPGYHRCY 144 (374)
T ss_dssp TTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-----TTTEEEEEECCSTTCTS--
T ss_pred cccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-----cceEEEEEeccccCcCcCC
Confidence 77999999888887542 36889999999999999888775 468999999999976 2
Q ss_pred C--CcHHHHHHHHHHHH
Q 006845 155 G--DDKEYLHHLVTLAR 169 (629)
Q Consensus 155 ~--~~~~y~~~l~~~~~ 169 (629)
+ +.++|.+||+++|.
T Consensus 145 ~~~~~~~f~~wLk~kY~ 161 (374)
T PF02449_consen 145 SPACQAAFRQWLKEKYG 161 (374)
T ss_dssp SHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHhC
Confidence 2 45667777777764
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.24 E-value=2.9e-10 Score=119.61 Aligned_cols=140 Identities=24% Similarity=0.320 Sum_probs=98.3
Q ss_pred CceeCCEeeEEEEEEecCC------CCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHH
Q 006845 1 MFRKDGEPFRIIGGDLHYF------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (629)
Q Consensus 1 ~f~~dG~~~~~~sg~~Hy~------r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~ 74 (629)
.|+|||||+.+-|.+.|.. .++.+.|+++|++||++|+|+||+ .|-|. -.+|+++|.+
T Consensus 7 ~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~~~~cD~ 70 (298)
T PF02836_consen 7 GFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRFYDLCDE 70 (298)
T ss_dssp EEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHHHHHHHH
T ss_pred EEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHHHHHHhh
Confidence 4899999999999999964 367999999999999999999999 56664 3799999999
Q ss_pred cCceEEecCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCC
Q 006845 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (629)
Q Consensus 75 ~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~ 154 (629)
.||.|+..+. ..+.-.|-... .......+|.+.+.+.+-+++++.+.+.| +.||+|=+-||-
T Consensus 71 ~GilV~~e~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~NH-----PSIi~W~~gNE~--- 132 (298)
T PF02836_consen 71 LGILVWQEIP--------LEGHGSWQDFG--NCNYDADDPEFRENAEQELREMVRRDRNH-----PSIIMWSLGNES--- 132 (298)
T ss_dssp HT-EEEEE-S---------BSCTSSSSTS--CTSCTTTSGGHHHHHHHHHHHHHHHHTT------TTEEEEEEEESS---
T ss_pred cCCEEEEecc--------ccccCccccCC--ccccCCCCHHHHHHHHHHHHHHHHcCcCc-----CchheeecCccC---
Confidence 9999998731 11111122110 01234678999998888888887777754 699999999999
Q ss_pred CCcHHHHHHHHHHHHHhcCCc
Q 006845 155 GDDKEYLHHLVTLARAHLGKD 175 (629)
Q Consensus 155 ~~~~~y~~~l~~~~~~~~G~~ 175 (629)
....+++.|.+++++.....
T Consensus 133 -~~~~~~~~l~~~~k~~DptR 152 (298)
T PF02836_consen 133 -DYREFLKELYDLVKKLDPTR 152 (298)
T ss_dssp -HHHHHHHHHHHHHHHH-TTS
T ss_pred -ccccchhHHHHHHHhcCCCC
Confidence 45678888888888854333
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.09 E-value=1.9e-08 Score=115.99 Aligned_cols=142 Identities=21% Similarity=0.167 Sum_probs=99.7
Q ss_pred CceeCCEeeEEEEEEecCC------CCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHH
Q 006845 1 MFRKDGEPFRIIGGDLHYF------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (629)
Q Consensus 1 ~f~~dG~~~~~~sg~~Hy~------r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~ 74 (629)
.|+|||+|+++-|.+.|.. .++.+.|+.+|+.||++|+|+||+ .|-|. -.+|+++|.+
T Consensus 284 ~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~~~~~~cD~ 347 (604)
T PRK10150 284 QFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SEEMLDLADR 347 (604)
T ss_pred EEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CHHHHHHHHh
Confidence 3899999999999999853 267889999999999999999999 46554 2699999999
Q ss_pred cCceEEecCCCcccccccCCCCccccc-------ccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEee
Q 006845 75 LDLLVMLRPGPYICAEWDLGGFPAWLL-------AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQI 147 (629)
Q Consensus 75 ~GL~VilrpGPyi~aEw~~GG~P~Wl~-------~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~Qv 147 (629)
+||+|+.... ++ |+..|.. +..+....-..+|.+.++..+-+++++.+.+ |++.||||-+
T Consensus 348 ~GllV~~E~p--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~-----NHPSIi~Ws~ 414 (604)
T PRK10150 348 HGIVVIDETP--AV------GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK-----NHPSVVMWSI 414 (604)
T ss_pred cCcEEEEecc--cc------cccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-----CCceEEEEee
Confidence 9999998732 11 1111211 1011111123456677766665666655544 5679999999
Q ss_pred ccccCCCC-CcHHHHHHHHHHHHHh
Q 006845 148 ENEFGSYG-DDKEYLHHLVTLARAH 171 (629)
Q Consensus 148 ENEyg~~~-~~~~y~~~l~~~~~~~ 171 (629)
-||...-. ....+++.|.+.+|+.
T Consensus 415 gNE~~~~~~~~~~~~~~l~~~~k~~ 439 (604)
T PRK10150 415 ANEPASREQGAREYFAPLAELTRKL 439 (604)
T ss_pred ccCCCccchhHHHHHHHHHHHHHhh
Confidence 99975422 3456778888888884
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.08 E-value=2.6e-09 Score=109.73 Aligned_cols=157 Identities=22% Similarity=0.384 Sum_probs=109.0
Q ss_pred eCCEeeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCC-CCCCe-eeecchhhHHHHHHHHHHcCceEEe
Q 006845 4 KDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHE-PKPGK-LVFSGIADLVSFLKLCQKLDLLVML 81 (629)
Q Consensus 4 ~dG~~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE-p~~G~-~df~~~~Dl~~fl~~a~~~GL~Vil 81 (629)
.+|+++...+-+.|+.. +..-++.+++||++|+|+||+.|.|...+ +.++. ++=+....|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 47999999999999321 22778999999999999999999995555 67765 7777777899999999999999999
Q ss_pred cCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCCCCc----
Q 006845 82 RPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDD---- 157 (629)
Q Consensus 82 rpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~---- 157 (629)
. +.+ .|.|...... . ...+...+...++++.|+.+++ +..+|++++|-||......+
T Consensus 81 d----~h~------~~~w~~~~~~-~---~~~~~~~~~~~~~~~~la~~y~-----~~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 81 D----LHN------APGWANGGDG-Y---GNNDTAQAWFKSFWRALAKRYK-----DNPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp E----EEE------STTCSSSTST-T---TTHHHHHHHHHHHHHHHHHHHT-----TTTTTEEEESSSSGCSTTSTTTTS
T ss_pred E----ecc------Cccccccccc-c---ccchhhHHHHHhhhhhhccccC-----CCCcEEEEEecCCccccCCccccc
Confidence 8 232 2777433111 0 1222233333444555555554 34589999999999875432
Q ss_pred -------HHHHHHHHHHHHHhcCCceEEEEec
Q 006845 158 -------KEYLHHLVTLARAHLGKDIILYTTD 182 (629)
Q Consensus 158 -------~~y~~~l~~~~~~~~G~~v~l~t~d 182 (629)
.++.+.+.+.+|+ .+-+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~-~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRA-ADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHH-TTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHh-cCCcceeecCC
Confidence 4566777777888 56665555443
No 9
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.89 E-value=3.7e-09 Score=95.80 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=50.3
Q ss_pred CCCceEEEEEEEecCCCCccceeEe-----eCCCceEEEEEcCcccccccCCCccceeecccceEEEeccccccCCcee
Q 006845 533 TKEPAFYVGRFSIDKVNQVKDTYLS-----FSGWGKGIAFVNEFNLGRFWPVKFFLISYMQLSLIVYCYGVVIGPFAVF 606 (629)
Q Consensus 533 ~~~p~fYr~tF~l~~~~~~~DTfLd-----~sgwgKG~v~VNG~nlGRYWp~iGPQ~~~~~~~~~~~~p~~~l~~~~~~ 606 (629)
.++..|||++|+... .|+.|. .+.+.+++|||||++|||||+.+|||++ ++||..+|+....+
T Consensus 33 ~~g~~~Yrg~F~~~~----~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~t-------f~~p~~il~~~n~v 100 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTG----QDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTT-------FSVPAGILKYGNNV 100 (111)
T ss_dssp SSCEEEEEEEEETTT----EEEEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEE-------EEE-BTTBTTCEEE
T ss_pred CCCCEEEEEEEeCCC----cceeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEE-------EEeCceeecCCCEE
Confidence 468999999996322 355554 2557899999999999999999999977 99999999987544
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=2.1e-07 Score=109.44 Aligned_cols=112 Identities=25% Similarity=0.320 Sum_probs=91.7
Q ss_pred CceeCCEeeEEEEEEecCC-----CC-CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHH
Q 006845 1 MFRKDGEPFRIIGGDLHYF-----RI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (629)
Q Consensus 1 ~f~~dG~~~~~~sg~~Hy~-----r~-p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~ 74 (629)
.|+|||||+++-|..-|.+ |. ..+..+++|++||++|+|+|||- |-|+ =.+|+++|.+
T Consensus 292 ~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~-----------~~~~ydLcDe 355 (808)
T COG3250 292 LLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPN-----------SEEFYDLCDE 355 (808)
T ss_pred eEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCC-----------CHHHHHHHHH
Confidence 4899999999999999975 33 35569999999999999999993 7776 4799999999
Q ss_pred cCceEEecCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCC
Q 006845 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (629)
Q Consensus 75 ~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~ 153 (629)
.||+||-. +..||-. . | +|+.|++.+..=+++++++.+. ++.||||=+.||-|.
T Consensus 356 lGllV~~E----a~~~~~~--~--------~------~~~~~~k~~~~~i~~mver~kn-----HPSIiiWs~gNE~~~ 409 (808)
T COG3250 356 LGLLVIDE----AMIETHG--M--------P------DDPEWRKEVSEEVRRMVERDRN-----HPSIIIWSLGNESGH 409 (808)
T ss_pred hCcEEEEe----cchhhcC--C--------C------CCcchhHHHHHHHHHHHHhccC-----CCcEEEEeccccccC
Confidence 99999999 3333311 1 1 7888888888877777777765 469999999999875
No 11
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.62 E-value=4.2e-07 Score=110.40 Aligned_cols=135 Identities=19% Similarity=0.214 Sum_probs=94.9
Q ss_pred CceeCCEeeEEEEEEecCC-----C-CCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHH
Q 006845 1 MFRKDGEPFRIIGGDLHYF-----R-ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (629)
Q Consensus 1 ~f~~dG~~~~~~sg~~Hy~-----r-~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~ 74 (629)
.|+|||+|+++-|...|.. | ++++.|+++|+.||++|+|+||+ .|-|. -.+|+++|.+
T Consensus 326 ~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~~fydlcDe 389 (1021)
T PRK10340 326 LFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DPRFYELCDI 389 (1021)
T ss_pred EEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CHHHHHHHHH
Confidence 3899999999999998843 2 57899999999999999999999 36554 3699999999
Q ss_pred cCceEEecCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCC
Q 006845 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (629)
Q Consensus 75 ~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~ 154 (629)
.||+|+-.. |..|..|...+ +...-.++|.|.++..+-+++++.+.+ |++.||+|-+-||-+.
T Consensus 390 ~GllV~dE~-~~e~~g~~~~~----------~~~~~~~~p~~~~~~~~~~~~mV~Rdr-----NHPSIi~WslGNE~~~- 452 (1021)
T PRK10340 390 YGLFVMAET-DVESHGFANVG----------DISRITDDPQWEKVYVDRIVRHIHAQK-----NHPSIIIWSLGNESGY- 452 (1021)
T ss_pred CCCEEEECC-cccccCccccc----------ccccccCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccCccc-
Confidence 999999984 33332221100 000114677776554443444544444 5679999999999753
Q ss_pred CCcHHHHHHHHHHHHHh
Q 006845 155 GDDKEYLHHLVTLARAH 171 (629)
Q Consensus 155 ~~~~~y~~~l~~~~~~~ 171 (629)
+. .++.+.+.+|+.
T Consensus 453 g~---~~~~~~~~~k~~ 466 (1021)
T PRK10340 453 GC---NIRAMYHAAKAL 466 (1021)
T ss_pred cH---HHHHHHHHHHHh
Confidence 22 246677777774
No 12
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.60 E-value=4.8e-07 Score=109.76 Aligned_cols=131 Identities=20% Similarity=0.298 Sum_probs=93.9
Q ss_pred CceeCCEeeEEEEEEecCC------CCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHH
Q 006845 1 MFRKDGEPFRIIGGDLHYF------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (629)
Q Consensus 1 ~f~~dG~~~~~~sg~~Hy~------r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~ 74 (629)
.|+|||+|+++-|...|.. +++++.++++|+.||++|+|+||+ .|-|. -.+|+++|.+
T Consensus 342 ~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p~fydlcDe 405 (1027)
T PRK09525 342 LLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HPLWYELCDR 405 (1027)
T ss_pred EEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CHHHHHHHHH
Confidence 4899999999999999842 467999999999999999999999 35554 2699999999
Q ss_pred cCceEEecCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCC
Q 006845 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (629)
Q Consensus 75 ~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~ 154 (629)
+||+|+-... . |. .|-.|. . . -.+||.|++++.+=+++++.+.+ |++.||||-+-||-+.
T Consensus 406 ~GilV~dE~~-~---e~-hg~~~~---~-----~-~~~dp~~~~~~~~~~~~mV~Rdr-----NHPSIi~WSlgNE~~~- 465 (1027)
T PRK09525 406 YGLYVVDEAN-I---ET-HGMVPM---N-----R-LSDDPRWLPAMSERVTRMVQRDR-----NHPSIIIWSLGNESGH- 465 (1027)
T ss_pred cCCEEEEecC-c---cc-cCCccc---c-----C-CCCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeCccCCCc-
Confidence 9999998842 1 10 111111 0 0 14578887766555555555544 5679999999999763
Q ss_pred CCcHHHHHHHHHHHHH
Q 006845 155 GDDKEYLHHLVTLARA 170 (629)
Q Consensus 155 ~~~~~y~~~l~~~~~~ 170 (629)
+ ...+.+.+.+|+
T Consensus 466 g---~~~~~l~~~~k~ 478 (1027)
T PRK09525 466 G---ANHDALYRWIKS 478 (1027)
T ss_pred C---hhHHHHHHHHHh
Confidence 2 234566666666
No 13
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.51 E-value=3.1e-06 Score=87.34 Aligned_cols=113 Identities=20% Similarity=0.375 Sum_probs=84.7
Q ss_pred CCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHH
Q 006845 47 WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGV 126 (629)
Q Consensus 47 Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~ 126 (629)
|...||++|+|||+. .+++++.|+++||.|.-. +.+ |-. ..|.|+... + .+..++++++|+++
T Consensus 3 W~~~ep~~G~~n~~~---~D~~~~~a~~~gi~v~gH--~l~---W~~-~~P~W~~~~-~-------~~~~~~~~~~~i~~ 65 (254)
T smart00633 3 WDSTEPSRGQFNFSG---ADAIVNFAKENGIKVRGH--TLV---WHS-QTPDWVFNL-S-------KETLLARLENHIKT 65 (254)
T ss_pred cccccCCCCccChHH---HHHHHHHHHHCCCEEEEE--EEe---ecc-cCCHhhhcC-C-------HHHHHHHHHHHHHH
Confidence 899999999999999 899999999999998332 222 433 689999752 2 34556777777777
Q ss_pred HHHhhccccccCCCceEEEeeccccCCCC------------CcHHHHHHHHHHHHHhcCCceEEEEecCC
Q 006845 127 LLPKIAPLLYDIGGPIVMVQIENEFGSYG------------DDKEYLHHLVTLARAHLGKDIILYTTDGG 184 (629)
Q Consensus 127 l~~~l~~~~~~~ggpII~~QvENEyg~~~------------~~~~y~~~l~~~~~~~~G~~v~l~t~dg~ 184 (629)
++.+++ |.|..|+|-||.-..+ ...+|+...-+.+|++ .-++.|+.+|-+
T Consensus 66 v~~ry~-------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~-~P~a~l~~Ndy~ 127 (254)
T smart00633 66 VVGRYK-------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREA-DPDAKLFYNDYN 127 (254)
T ss_pred HHHHhC-------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHh-CCCCEEEEeccC
Confidence 766654 5688999999953211 1247888888888884 568999999865
No 14
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.31 E-value=3.7e-06 Score=76.23 Aligned_cols=78 Identities=28% Similarity=0.427 Sum_probs=57.7
Q ss_pred ccccccCcccceEEEEEeecCCCCCc--c-eeec-ccccEEEEEECCCCCCCCCCCeEEEEEec-cc-cceeEecc--cc
Q 006845 375 LSMESVGQMFGFLLYVSEFGGKDYGS--S-LLIS-KVHDRAQVFISCPTEDNSGRPTYVGTIER-WS-NRALSLPN--FR 446 (629)
Q Consensus 375 ~~mE~lgq~~GyilYrt~~~~~~~~~--~-L~i~-~~~D~a~V~vng~~~~~~~~~~~vG~l~~-~~-~~~~~lp~--~~ 446 (629)
+.+.+++.+.|++||||+|....... . |.+. +.+.+++||||| .++|+... .. ..+|.+|. ++
T Consensus 25 l~~~~~g~~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG---------~~~G~~~~~~g~q~tf~~p~~il~ 95 (111)
T PF13364_consen 25 LYASDYGFHAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNG---------WFLGSYWPGIGPQTTFSVPAGILK 95 (111)
T ss_dssp TCCGCGTSSSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETT---------EEEEEEETTTECCEEEEE-BTTBT
T ss_pred eccCccccCCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECC---------EEeeeecCCCCccEEEEeCceeec
Confidence 56788899999999999997543222 3 4444 689999999999 99999873 22 35688885 33
Q ss_pred cCCccEEEEEEEecCc
Q 006845 447 CGSNISLFVLVENMGR 462 (629)
Q Consensus 447 ~~~~~~L~ILVEn~GR 462 (629)
. ++++|.+|+++||+
T Consensus 96 ~-~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 96 Y-GNNVLVVLWDNMGH 110 (111)
T ss_dssp T-CEEEEEEEEE-STT
T ss_pred C-CCEEEEEEEeCCCC
Confidence 3 47789999999996
No 15
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.20 E-value=8.5e-05 Score=78.32 Aligned_cols=233 Identities=18% Similarity=0.290 Sum_probs=112.5
Q ss_pred eCCEeeEEEEEEecCC---CCCHhHHHHHHHHHHHcCCCEEEEecc--CCCC--------CC----CCCeeeecch----
Q 006845 4 KDGEPFRIIGGDLHYF---RILPQHWEDRLLRAKALGLNTIQTYVP--WNLH--------EP----KPGKLVFSGI---- 62 (629)
Q Consensus 4 ~dG~~~~~~sg~~Hy~---r~p~~~W~~~l~k~ka~G~NtV~~yv~--Wn~h--------Ep----~~G~~df~~~---- 62 (629)
-||+||+.++ ...+. |...++|+.-|+..|+-|||+|++=++ |... .| .++.+||+..
T Consensus 8 ~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y 86 (289)
T PF13204_consen 8 ADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY 86 (289)
T ss_dssp TTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H
T ss_pred CCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH
Confidence 6999999998 55553 577899999999999999999999764 4432 11 2233777753
Q ss_pred -hhHHHHHHHHHHcCceEEecC---CCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccC
Q 006845 63 -ADLVSFLKLCQKLDLLVMLRP---GPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDI 138 (629)
Q Consensus 63 -~Dl~~fl~~a~~~GL~Vilrp---GPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ 138 (629)
..+++.|+.|.+.||.+-|-| +||.-+-|-.| | ..| =.+.+++|++.|+.+++.+-
T Consensus 87 F~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~-------~~m--------~~e~~~~Y~~yv~~Ry~~~~--- 146 (289)
T PF13204_consen 87 FDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P-------NIM--------PPENAERYGRYVVARYGAYP--- 146 (289)
T ss_dssp HHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T-------TSS---------HHHHHHHHHHHHHHHTT-S---
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c-------cCC--------CHHHHHHHHHHHHHHHhcCC---
Confidence 479999999999999976653 23332333222 1 111 13678888999999998862
Q ss_pred CCceEEEeeccccCCCCCcHHHHHHHHHHHHHhcCCceEEEEecCCCc--ccccCCCcCCCeeeeeecCCCCC---CCch
Q 006845 139 GGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYTTDGGTR--ETLLKGTIRGDAVFAAVDFSTGA---EPWP 213 (629)
Q Consensus 139 ggpII~~QvENEyg~~~~~~~y~~~l~~~~~~~~G~~v~l~t~dg~~~--~~~~~g~~~~~~v~~t~~f~~~~---~~~~ 213 (629)
+|| |=|-||+.....+.++.+.+.+.+++..+-...-++.-+... ..+.....- |.. -++++. +...
T Consensus 147 --Nvi-W~l~gd~~~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wl--df~---~~Qsgh~~~~~~~ 218 (289)
T PF13204_consen 147 --NVI-WILGGDYFDTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWL--DFN---MYQSGHNRYDQDN 218 (289)
T ss_dssp --SEE-EEEESSS--TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT----SE---EEB--S--TT--T
T ss_pred --CCE-EEecCccCCCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcc--eEE---EeecCCCcccchH
Confidence 466 679999922236778888888888886555522233332210 011111000 011 111211 1111
Q ss_pred hHHH--HHHhcCCCCCCCccccc-ccccccccCCCCccCChH-HHHHHHHHHHhcC
Q 006845 214 IFKL--QKQFNAPGKSPPLSSEF-YTGWLTHWGEKIAKTDAD-FTASYLEKILSQN 265 (629)
Q Consensus 214 ~~~~--~~~~~~~~~~P~~~~E~-~~Gwf~~Wg~~~~~~~~~-~~~~~~~~~l~~~ 265 (629)
...+ ...++..+.+|.+..|- |-|....+.......+++ ........+|+++
T Consensus 219 ~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 219 WYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp HHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred HHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 1112 23444455789998886 555443332222233444 4445666777765
No 16
>PLN02161 beta-amylase
Probab=98.14 E-value=6.6e-06 Score=90.64 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=65.0
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCC-CCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCC-----CC
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG-----GF 96 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~G-----G~ 96 (629)
++..+..|+++|++|+..|.+.|-|...|. .|++|||++ ..++++++++.||++.+--.=--|+. .-| -+
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpL 191 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISL 191 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccC
Confidence 556788999999999999999999999998 799999999 89999999999998544322223433 112 28
Q ss_pred cccccc---cCCCeee
Q 006845 97 PAWLLA---KKPALKL 109 (629)
Q Consensus 97 P~Wl~~---~~p~~~~ 109 (629)
|.|+.. .+|++..
T Consensus 192 P~WV~~~g~~~pDi~f 207 (531)
T PLN02161 192 PLWIREIGDVNKDIYY 207 (531)
T ss_pred CHHHHhhhccCCCceE
Confidence 999985 3566644
No 17
>TIGR03356 BGL beta-galactosidase.
Probab=98.14 E-value=3.4e-06 Score=93.54 Aligned_cols=97 Identities=12% Similarity=0.189 Sum_probs=73.6
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCccccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (629)
-..|+++|++||++|+|++|+.|.|+..+|. +|++|.++..=.+++|+.|.++||.+|+-- + --.+|.||.
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL----~----Hfd~P~~l~ 124 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTL----Y----HWDLPQALE 124 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEee----c----cCCccHHHH
Confidence 4679999999999999999999999999999 899998876668999999999999988762 1 125899998
Q ss_pred ccCCCeeecCCCHHHHHHHHHHHHHHHHhhc
Q 006845 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (629)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 132 (629)
++ .+.. ++...++-.+|.+.+++++.
T Consensus 125 ~~-gGw~----~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 125 DR-GGWL----NRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred hc-CCCC----ChHHHHHHHHHHHHHHHHhC
Confidence 63 3332 24444444444444544444
No 18
>PLN02803 beta-amylase
Probab=98.12 E-value=9.2e-06 Score=90.00 Aligned_cols=83 Identities=24% Similarity=0.486 Sum_probs=65.2
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCC-CCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCC-----CC
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG-----GF 96 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~G-----G~ 96 (629)
++..+..|+++|++|+..|.+.|-|...|. .|++|||++ ..++++++++.||++.+--.=--||. +-| -+
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpL 181 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPL 181 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccC
Confidence 566788999999999999999999999999 599999999 89999999999998544322223443 111 29
Q ss_pred cccccc---cCCCeee
Q 006845 97 PAWLLA---KKPALKL 109 (629)
Q Consensus 97 P~Wl~~---~~p~~~~ 109 (629)
|.|+.. .+|++..
T Consensus 182 P~WV~e~~~~~pDi~f 197 (548)
T PLN02803 182 PPWVLEEMSKNPDLVY 197 (548)
T ss_pred CHHHHHhhhcCCCceE
Confidence 999985 3566644
No 19
>PLN02705 beta-amylase
Probab=98.09 E-value=1.2e-05 Score=89.84 Aligned_cols=119 Identities=18% Similarity=0.333 Sum_probs=83.8
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCC-CCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCC------
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG------ 95 (629)
++..+..|+++|++|+..|.+.|-|...|. .|++|||++ ..++++++++.||++.+--.=--||. +-|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG--NVGD~~~IP 341 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG--NASGNVMIS 341 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC--CCCCccccc
Confidence 677899999999999999999999999998 699999999 89999999999998544322223544 333
Q ss_pred Ccccccc---cCCCeeecC--------------CC-H-----HHHHHHHHHHHHHHHhhccccccCCCceEEEeec
Q 006845 96 FPAWLLA---KKPALKLRS--------------SD-R-----AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (629)
Q Consensus 96 ~P~Wl~~---~~p~~~~R~--------------~~-~-----~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvE 148 (629)
+|.|+.. +.|++.... ++ | .-++.-..|++..-..+++++ .+|.|..|||-
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl--~~g~I~eI~VG 415 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLF--VEGLITAVEIG 415 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhc--cCCceeEEEec
Confidence 9999984 356764421 11 1 112333444444555555554 24688888883
No 20
>PLN00197 beta-amylase; Provisional
Probab=98.08 E-value=1.3e-05 Score=89.02 Aligned_cols=82 Identities=26% Similarity=0.427 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCC-CCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCC------
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG------ 95 (629)
++..+..|+++|++|+..|.+.|-|...|. .|++|||++ ..++++++++.||++.+--.=--||. +-|
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG--NVGD~~~Ip 200 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG--NVGDSCTIP 200 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 567899999999999999999999999998 799999999 89999999999998544322223443 222
Q ss_pred Ccccccc---cCCCeee
Q 006845 96 FPAWLLA---KKPALKL 109 (629)
Q Consensus 96 ~P~Wl~~---~~p~~~~ 109 (629)
+|.|+.. ++|++..
T Consensus 201 LP~WV~~~g~~dpDiff 217 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAY 217 (573)
T ss_pred CCHHHHHhhccCCCcee
Confidence 9999985 3566644
No 21
>PLN02905 beta-amylase
Probab=98.05 E-value=1.7e-05 Score=88.94 Aligned_cols=119 Identities=17% Similarity=0.351 Sum_probs=82.8
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCC-CCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCC------
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG------ 95 (629)
++..+..|+++|++|+..|.+.|-|...|. .|++|||++ ..++++++++.||++.+--.=--||. +-|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG--NVGD~~~IP 359 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG--NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 566788999999999999999999999998 799999999 89999999999998544322223543 222
Q ss_pred Ccccccc---cCCCeeecC--------------CC-H-----HHHHHHHHHHHHHHHhhccccccCCCceEEEeec
Q 006845 96 FPAWLLA---KKPALKLRS--------------SD-R-----AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (629)
Q Consensus 96 ~P~Wl~~---~~p~~~~R~--------------~~-~-----~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvE 148 (629)
+|.|+.. .+|++.... ++ | .-++.-..|++..-..+++++ .+|.|.-|||-
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl--~~g~I~eI~VG 433 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFF--EDGVISMVEVG 433 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHh--cCCceEEEEec
Confidence 9999985 357664421 11 0 112333344444445555553 24688888883
No 22
>PLN02801 beta-amylase
Probab=98.02 E-value=2.2e-05 Score=86.67 Aligned_cols=119 Identities=20% Similarity=0.388 Sum_probs=83.6
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCC-CCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCC------
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG------ 95 (629)
++..+..|+++|++|+..|.+.|-|...|. .|++|||++ ..+++++++++||++.+--.=--||. +-|
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG--NVGD~~~Ip 110 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG--NVGDAVNIP 110 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 667899999999999999999999999998 599999999 89999999999998544322223443 222
Q ss_pred Ccccccc---cCCCeeecC----CCHHH----------------HHHHHHHHHHHHHhhccccccCCCceEEEeec
Q 006845 96 FPAWLLA---KKPALKLRS----SDRAY----------------LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (629)
Q Consensus 96 ~P~Wl~~---~~p~~~~R~----~~~~y----------------~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvE 148 (629)
+|.|+.. .+|++.... .++.| ++.-..|++..-...++++ .+|.|..|||-
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l--~~~~I~eI~VG 184 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL--EAGVIIDIEVG 184 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc--cCCeeEEEEEc
Confidence 8999985 356664321 11111 2333444555555556553 24688888883
No 23
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.00 E-value=8.2e-05 Score=79.54 Aligned_cols=273 Identities=18% Similarity=0.278 Sum_probs=159.2
Q ss_pred EEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEe--ccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCccc
Q 006845 11 IIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTY--VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYIC 88 (629)
Q Consensus 11 ~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~y--v~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~ 88 (629)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+. .+++++.|+++||.|--.+ .+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~---~D~~~~~a~~~g~~vrGH~--Lv- 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFES---ADAILDWARENGIKVRGHT--LV- 81 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HH---HHHHHHHHHHTT-EEEEEE--EE-
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCccc---hhHHHHHHHhcCcceeeee--EE-
Confidence 789999988776542 3445555679999875 66999999999999998 8999999999999876441 11
Q ss_pred ccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCCC-------------
Q 006845 89 AEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG------------- 155 (629)
Q Consensus 89 aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~------------- 155 (629)
|.. ..|.|+... +... ..+.+...+++++++++++.+.+.. |.|.+|-|=||.=.-.
T Consensus 82 --W~~-~~P~w~~~~-~~~~-~~~~~~~~~~l~~~I~~v~~~y~~~-----g~i~~WDVvNE~i~~~~~~~~~r~~~~~~ 151 (320)
T PF00331_consen 82 --WHS-QTPDWVFNL-ANGS-PDEKEELRARLENHIKTVVTRYKDK-----GRIYAWDVVNEAIDDDGNPGGLRDSPWYD 151 (320)
T ss_dssp --ESS-SS-HHHHTS-TTSS-BHHHHHHHHHHHHHHHHHHHHTTTT-----TTESEEEEEES-B-TTSSSSSBCTSHHHH
T ss_pred --Ecc-cccceeeec-cCCC-cccHHHHHHHHHHHHHHHHhHhccc-----cceEEEEEeeecccCCCccccccCChhhh
Confidence 533 789999872 1110 0001247888888888888776642 7999999999973210
Q ss_pred -CcHHHHHHHHHHHHHhcCCceEEEEecCCCccccc-------------CCCcCCCeeeeeecCCCCCCCchhHHHHHHh
Q 006845 156 -DDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLL-------------KGTIRGDAVFAAVDFSTGAEPWPIFKLQKQF 221 (629)
Q Consensus 156 -~~~~y~~~l~~~~~~~~G~~v~l~t~dg~~~~~~~-------------~g~~~~~~v~~t~~f~~~~~~~~~~~~~~~~ 221 (629)
...+|+...-+.+|+. --++.||-||.+....-. .| ++-|.|---..|.....+....+.++++
T Consensus 152 ~lG~~yi~~aF~~A~~~-~P~a~L~~NDy~~~~~~k~~~~~~lv~~l~~~g-vpIdgIG~Q~H~~~~~~~~~i~~~l~~~ 229 (320)
T PF00331_consen 152 ALGPDYIADAFRAAREA-DPNAKLFYNDYNIESPAKRDAYLNLVKDLKARG-VPIDGIGLQSHFDAGYPPEQIWNALDRF 229 (320)
T ss_dssp HHTTCHHHHHHHHHHHH-HTTSEEEEEESSTTSTHHHHHHHHHHHHHHHTT-HCS-EEEEEEEEETTSSHHHHHHHHHHH
T ss_pred cccHhHHHHHHHHHHHh-CCCcEEEeccccccchHHHHHHHHHHHHHHhCC-CccceechhhccCCCCCHHHHHHHHHHH
Confidence 1246888888888885 458999999986543300 11 1111111111222221222233345555
Q ss_pred cCCCCCCCcccccccccccccCCCCc------cCChHHHHHHHHHHHhcC-CceEEEEEEcCCCCCCCCCCCCCCCCCCC
Q 006845 222 NAPGKSPPLSSEFYTGWLTHWGEKIA------KTDADFTASYLEKILSQN-GSAVLYMAHGGTNFGFYNGANTGNTESDY 294 (629)
Q Consensus 222 ~~~~~~P~~~~E~~~Gwf~~Wg~~~~------~~~~~~~~~~~~~~l~~~-~s~n~YM~hGGTNfG~~~G~~~~~~~~~~ 294 (629)
...| -|...+|+= -...... ..-++.+...++.+++.. +++ -|=|=||++.+.+ +
T Consensus 230 ~~~G-l~i~ITElD-----v~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v-----~git~Wg~~D~~s-------W 291 (320)
T PF00331_consen 230 ASLG-LPIHITELD-----VRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAV-----EGITWWGFTDGYS-------W 291 (320)
T ss_dssp HTTT-SEEEEEEEE-----EESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTE-----EEEEESSSBTTGS-------T
T ss_pred HHcC-CceEEEeee-----ecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCC-----CEEEEECCCCCCc-------c
Confidence 4333 588889973 2221111 011233333444445544 122 3335578876543 2
Q ss_pred CCCccCcCCCCccccCCCCChHHHHHHHHH
Q 006845 295 QPDLTSYDYDAPIKESGDVDNPKFKAIRRV 324 (629)
Q Consensus 295 ~~~~TSYDY~Apl~E~G~~t~pKy~~lr~~ 324 (629)
.+... .++..+.++++++.+ -|.++++.
T Consensus 292 ~~~~~-~~~~~lfd~~~~~Kp-a~~~~~~a 319 (320)
T PF00331_consen 292 RPDTP-PDRPLLFDEDYQPKP-AYDAIVDA 319 (320)
T ss_dssp TGGHS-EG--SSB-TTSBB-H-HHHHHHHH
T ss_pred cCCCC-CCCCeeECCCcCCCH-HHHHHHhc
Confidence 22211 677899999999985 89888764
No 24
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.96 E-value=8.3e-05 Score=78.27 Aligned_cols=194 Identities=18% Similarity=0.197 Sum_probs=94.6
Q ss_pred eCCEeeEEEEEEecCCCC-----------CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHH
Q 006845 4 KDGEPFRIIGGDLHYFRI-----------LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLC 72 (629)
Q Consensus 4 ~dG~~~~~~sg~~Hy~r~-----------p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a 72 (629)
.+|++|+|.|-.+.+--. .++.|++++..||++|+||||+| .-+-..|-++++++.
T Consensus 22 ~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY-------------~vdp~~nHd~CM~~~ 88 (314)
T PF03198_consen 22 KNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVY-------------SVDPSKNHDECMSAF 88 (314)
T ss_dssp TT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES----------------TTS--HHHHHHH
T ss_pred CCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEE-------------EeCCCCCHHHHHHHH
Confidence 688999999887775322 37899999999999999999996 333346789999999
Q ss_pred HHcCceEEecCCCcccccccCCCCcccccccCCCeeecCCCH--HHHHHHHHHHHHHHHhhccccccCCCceEEEeeccc
Q 006845 73 QKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDR--AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENE 150 (629)
Q Consensus 73 ~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~--~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENE 150 (629)
+++|||||+.-+. |...+..++| .|-...-.-+.+++..++++- +++++=+-||
T Consensus 89 ~~aGIYvi~Dl~~-------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~-----N~LgFf~GNE 144 (314)
T PF03198_consen 89 ADAGIYVILDLNT-------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD-----NTLGFFAGNE 144 (314)
T ss_dssp HHTT-EEEEES-B-------------------TTBS--TTS------HHHHHHHHHHHHHHTT-T-----TEEEEEEEES
T ss_pred HhCCCEEEEecCC-------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccCC-----ceEEEEecce
Confidence 9999999998421 3333434445 443222222334567777763 8999999999
Q ss_pred cCCCC---Cc----HHHHHHHHHHHHHhcCC-ceEE--EEecCCC-----cccccCCCcCC-CeeeeeecCC-CCCCCc-
Q 006845 151 FGSYG---DD----KEYLHHLVTLARAHLGK-DIIL--YTTDGGT-----RETLLKGTIRG-DAVFAAVDFS-TGAEPW- 212 (629)
Q Consensus 151 yg~~~---~~----~~y~~~l~~~~~~~~G~-~v~l--~t~dg~~-----~~~~~~g~~~~-~~v~~t~~f~-~~~~~~- 212 (629)
.-.-. .. |+..+.+|+-.++ .+. .+|+ -++|... ...+.||.-.. -|.|+--++. |+....
T Consensus 145 Vin~~~~t~aap~vKAavRD~K~Yi~~-~~~R~IPVGYsaaD~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~Stf~ 223 (314)
T PF03198_consen 145 VINDASNTNAAPYVKAAVRDMKAYIKS-KGYRSIPVGYSAADDAEIRQDLANYLNCGDDDERIDFFGLNSYEWCGDSTFE 223 (314)
T ss_dssp SS-STT-GGGHHHHHHHHHHHHHHHHH-SSS----EEEEE---TTTHHHHHHHTTBTT-----S-EEEEE----SS--HH
T ss_pred eecCCCCcccHHHHHHHHHHHHHHHHh-cCCCCCceeEEccCChhHHHHHHHHhcCCCcccccceeeeccceecCCCccc
Confidence 85421 22 4445555555555 344 4555 4566542 22455765421 1344422222 332211
Q ss_pred -hhHH-HHHHhcCCCCCCCccccccc
Q 006845 213 -PIFK-LQKQFNAPGKSPPLSSEFYT 236 (629)
Q Consensus 213 -~~~~-~~~~~~~~~~~P~~~~E~~~ 236 (629)
+.+. +.+.|..- .-|.+.+||..
T Consensus 224 ~SGy~~l~~~f~~y-~vPvffSEyGC 248 (314)
T PF03198_consen 224 TSGYDRLTKEFSNY-SVPVFFSEYGC 248 (314)
T ss_dssp HHSHHHHHHHHTT--SS-EEEEEE--
T ss_pred cccHHHHHHHhhCC-CCCeEEcccCC
Confidence 1222 34455322 45999999965
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.76 E-value=2.2e-05 Score=85.09 Aligned_cols=114 Identities=20% Similarity=0.312 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCeeeecchhhHHHHHHHHHHcCceEEecCCCccccc----ccCCCCccc
Q 006845 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAE----WDLGGFPAW 99 (629)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aE----w~~GG~P~W 99 (629)
..+..|+++|++|+..|.+.|-|...|.+ |++|||++ .+++++++++.||++.+-..=--|+- .-+=-+|.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 56788999999999999999999999997 99999999 89999999999998655321122321 111138999
Q ss_pred ccc---cCCCeee--cC------------CCHHHHHHHHHHHHHHHHhhccccccCCCceEEEee
Q 006845 100 LLA---KKPALKL--RS------------SDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQI 147 (629)
Q Consensus 100 l~~---~~p~~~~--R~------------~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~Qv 147 (629)
+.. ++ ++.. |+ .... ++.-..|++.+....+.+. +.|..|||
T Consensus 94 v~~~~~~~-di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKD-DIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSDYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHS-GGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHHHH----TGEEEEEE
T ss_pred HHhccccC-CcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHHHH----hhheEEEe
Confidence 974 22 4432 11 1122 4444555555555555553 47777766
No 26
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.44 E-value=0.00014 Score=81.62 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=82.0
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCC--CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (629)
-..|+++++.||++|+|+.|+-+.|...+|. ++++|-.+..=.+++|+.+.++||.+++-- + -=.+|.||
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL----~----H~~~P~~l 141 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL----C----HFDVPMHL 141 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe----e----CCCCCHHH
Confidence 4567999999999999999999999999997 566787777778999999999999977651 1 22589999
Q ss_pred cccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceE
Q 006845 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIV 143 (629)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII 143 (629)
..++-+-.-|..-..|.++++..++++..+++-+.-=|...++
T Consensus 142 ~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~ 184 (474)
T PRK09852 142 VTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIM 184 (474)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhh
Confidence 7644444334444566666666666665555554333444433
No 27
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.43 E-value=0.00046 Score=66.04 Aligned_cols=93 Identities=22% Similarity=0.226 Sum_probs=63.2
Q ss_pred CcccceEEEEEeecCCC----CCcceeecccccEEEEEECCCCCCCCCCCeEEEEEecc-ccceeEecccccCCc-cEEE
Q 006845 381 GQMFGFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERW-SNRALSLPNFRCGSN-ISLF 454 (629)
Q Consensus 381 gq~~GyilYrt~~~~~~----~~~~L~i~~~~D~a~V~vng~~~~~~~~~~~vG~l~~~-~~~~~~lp~~~~~~~-~~L~ 454 (629)
....|..+||++|..+. ....|.+.++.+.|.||||| +++|.-... ....+.++.....+. |+|.
T Consensus 64 ~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG---------~~vg~~~~~~~~~~~dIt~~l~~g~~N~l~ 134 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNG---------KLVGSHEGGYTPFEFDITDYLKPGEENTLA 134 (167)
T ss_dssp STCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETT---------EEEEEEESTTS-EEEECGGGSSSEEEEEEE
T ss_pred cccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCC---------eEEeeeCCCcCCeEEeChhhccCCCCEEEE
Confidence 45689999999997542 34577889999999999999 899997542 234456654333345 9999
Q ss_pred EEEEecCccccCCC--CCCCCCcccceEeC
Q 006845 455 VLVENMGRVNYGPY--MFDEKGILSSVYLG 482 (629)
Q Consensus 455 ILVEn~GRvNyG~~--~~d~KGI~g~V~L~ 482 (629)
|.|.+...-.+-+. .....||..+|.|-
T Consensus 135 V~v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 135 VRVDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EEEESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EEEeecCCCceeecCcCCccCccccEEEEE
Confidence 99997654433111 12378999988873
No 28
>PLN02998 beta-glucosidase
Probab=97.37 E-value=0.00023 Score=80.46 Aligned_cols=112 Identities=8% Similarity=0.108 Sum_probs=85.3
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCccccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (629)
-..|+++|+.||+||+|+-|+-|.|+..+|. .|.+|-.|..=.+++|+.+.++||..++-- . =| -+|.||.
T Consensus 81 Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL----~-H~---dlP~~L~ 152 (497)
T PLN02998 81 YHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL----H-HF---DLPQALE 152 (497)
T ss_pred HHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe----c-CC---CCCHHHH
Confidence 4678999999999999999999999999996 678888888888999999999999866541 1 12 4799998
Q ss_pred ccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCce
Q 006845 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPI 142 (629)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpI 142 (629)
.++-+-.-|..-..|.++++..++++..+++-+.--|...+
T Consensus 153 ~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 153 DEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred HhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 74455544555567788888877777666665533344433
No 29
>PLN02814 beta-glucosidase
Probab=97.31 E-value=0.0003 Score=79.59 Aligned_cols=111 Identities=9% Similarity=0.111 Sum_probs=84.3
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCccccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (629)
-..|+++++.||++|+|+-|+-|.|+..+|. +|.+|-.|..=.+++|+.+.++||..++-- + =| -+|.||.
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL----~-H~---dlP~~L~ 147 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL----Y-HY---DLPQSLE 147 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe----c-CC---CCCHHHH
Confidence 4678999999999999999999999999996 788999997778999999999999866541 1 13 3799998
Q ss_pred ccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCc
Q 006845 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGP 141 (629)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggp 141 (629)
+++-+-.-|..-..|.++++..++++..+++-+.--|...
T Consensus 148 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~ 187 (504)
T PLN02814 148 DEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEAT 187 (504)
T ss_pred HhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccc
Confidence 7545554455556677777777777766665443334433
No 30
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=97.27 E-value=0.0053 Score=59.68 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=81.6
Q ss_pred CCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCC-----CCC---CeeeecchhhHHHHHHHHHHcCceEEecCCCccccc
Q 006845 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHE-----PKP---GKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (629)
Q Consensus 19 ~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE-----p~~---G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aE 90 (629)
-.+.+++|+++|+.||++|++||=+- |...+ |.. +.|.-...-=|+.+|++|++.||+|.+.-
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl------- 85 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGL------- 85 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeC-------
Confidence 47999999999999999999998542 22222 111 11222212238999999999999999983
Q ss_pred ccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCCC-CcHHHHHHHHHHHH
Q 006845 91 WDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG-DDKEYLHHLVTLAR 169 (629)
Q Consensus 91 w~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~-~~~~y~~~l~~~~~ 169 (629)
+--|.|... .|+....+ +-++++..|.. .+++....-+|=|-.|...+. ...++.+.|.+.++
T Consensus 86 ---~~~~~~w~~---------~~~~~~~~---~~~~v~~el~~-~yg~h~sf~GWYip~E~~~~~~~~~~~~~~l~~~lk 149 (166)
T PF14488_consen 86 ---YFDPDYWDQ---------GDLDWEAE---RNKQVADELWQ-RYGHHPSFYGWYIPYEIDDYNWNAPERFALLGKYLK 149 (166)
T ss_pred ---CCCchhhhc---------cCHHHHHH---HHHHHHHHHHH-HHcCCCCCceEEEecccCCcccchHHHHHHHHHHHH
Confidence 223445432 22222111 11234555554 245566888999999997665 45667777777777
Q ss_pred Hh
Q 006845 170 AH 171 (629)
Q Consensus 170 ~~ 171 (629)
+.
T Consensus 150 ~~ 151 (166)
T PF14488_consen 150 QI 151 (166)
T ss_pred Hh
Confidence 63
No 31
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.26 E-value=0.00015 Score=81.14 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=74.4
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCC--CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (629)
-..|+++|+.||++|+|+.|+-|.|+..+|. +|++|-.+..-.+++|+.++++||..|+- . ---.+|.||
T Consensus 57 y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vt----L----~H~~~P~~l 128 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVT----L----YHFDLPLWL 128 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEE----E----ESS--BHHH
T ss_pred hhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeee----e----eecccccce
Confidence 4679999999999999999999999999999 69999999877899999999999987665 1 134689999
Q ss_pred cccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccC
Q 006845 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG 152 (629)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg 152 (629)
.+ +-+-. ++...+.-.+|.+.+++++.. -|-.|-.=||..
T Consensus 129 ~~-~ggw~----~~~~~~~F~~Ya~~~~~~~gd-------~V~~w~T~NEp~ 168 (455)
T PF00232_consen 129 ED-YGGWL----NRETVDWFARYAEFVFERFGD-------RVKYWITFNEPN 168 (455)
T ss_dssp HH-HTGGG----STHHHHHHHHHHHHHHHHHTT-------TBSEEEEEETHH
T ss_pred ee-ccccc----CHHHHHHHHHHHHHHHHHhCC-------CcceEEeccccc
Confidence 86 33332 234444444555555555543 233455556653
No 32
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=97.25 E-value=0.00043 Score=77.95 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=84.7
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCC--CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (629)
-..|+++|+.||+||+|+-|+-|.|+..+|. +|++|=.|..=.+++|+.+.++||..++-- + =| -+|.||
T Consensus 72 Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL----~-H~---dlP~~L 143 (478)
T PRK09593 72 YHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI----T-HF---DCPMHL 143 (478)
T ss_pred HHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe----c-cc---CCCHHH
Confidence 4678999999999999999999999999997 677888887778999999999999766541 1 12 489999
Q ss_pred cccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCc
Q 006845 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGP 141 (629)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggp 141 (629)
..++-+-.-|..-..|.++++..++++..+++-+.-=|...
T Consensus 144 ~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~ 184 (478)
T PRK09593 144 IEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEIN 184 (478)
T ss_pred HhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchh
Confidence 86445554455456777888777777777666553334433
No 33
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.0035 Score=66.14 Aligned_cols=124 Identities=21% Similarity=0.376 Sum_probs=96.7
Q ss_pred CCEE--EEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccCCCeeecCCCHH
Q 006845 38 LNTI--QTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRA 115 (629)
Q Consensus 38 ~NtV--~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~ 115 (629)
||.| +.-.=|+..||++|.|+|+. -|+..+.|+++||.+--. +.+ | ..-.|.|+.... -+-++
T Consensus 58 ~n~iTpenemKwe~i~p~~G~f~Fe~---AD~ia~FAr~h~m~lhGH--tLv---W-~~q~P~W~~~~e------~~~~~ 122 (345)
T COG3693 58 CNQITPENEMKWEAIEPERGRFNFEA---ADAIANFARKHNMPLHGH--TLV---W-HSQVPDWLFGDE------LSKEA 122 (345)
T ss_pred hcccccccccccccccCCCCccCccc---hHHHHHHHHHcCCeeccc--eee---e-cccCCchhhccc------cChHH
Confidence 5544 34566999999999999999 799999999999964322 122 3 236899998632 45678
Q ss_pred HHHHHHHHHHHHHHhhccccccCCCceEEEeeccccC----C-------C-CCcHHHHHHHHHHHHHhcCCceEEEEecC
Q 006845 116 YLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG----S-------Y-GDDKEYLHHLVTLARAHLGKDIILYTTDG 183 (629)
Q Consensus 116 y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg----~-------~-~~~~~y~~~l~~~~~~~~G~~v~l~t~dg 183 (629)
.++.+++++..++.+.+. -|+.|-|=||.= + . +...+|+++.-..+|+ ..-+..||-||.
T Consensus 123 ~~~~~e~hI~tV~~rYkg-------~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~Are-adP~AkL~~NDY 194 (345)
T COG3693 123 LAKMVEEHIKTVVGRYKG-------SVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIARE-ADPDAKLVINDY 194 (345)
T ss_pred HHHHHHHHHHHHHHhccC-------ceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHh-hCCCceEEeecc
Confidence 899999999999888773 589999999972 2 1 1457899999999999 688899999998
Q ss_pred C
Q 006845 184 G 184 (629)
Q Consensus 184 ~ 184 (629)
.
T Consensus 195 ~ 195 (345)
T COG3693 195 S 195 (345)
T ss_pred c
Confidence 4
No 34
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.24 E-value=0.00059 Score=76.82 Aligned_cols=110 Identities=12% Similarity=0.118 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEeccCCCCCCC--CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCccccc
Q 006845 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (629)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (629)
..|+++|+.||++|+|+-|+-|.|+..+|. +|++|-.|..=.+++|+.+.++||..++-- . -=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL----~----H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL----S----HFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe----e----CCCCCHHHH
Confidence 578999999999999999999999999997 677888887778999999999999877751 1 125899998
Q ss_pred ccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCc
Q 006845 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGP 141 (629)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggp 141 (629)
.++-+-.-|..-..|.++++..++++..+++-+.-=|...
T Consensus 141 ~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~ 180 (477)
T PRK15014 141 QQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEIN 180 (477)
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCcc
Confidence 6444443343344556666665555555544443224433
No 35
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=97.23 E-value=0.00042 Score=77.96 Aligned_cols=112 Identities=11% Similarity=0.118 Sum_probs=85.8
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCC--CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (629)
-..|+++++.||+||+|+-|+-|.|+..+|. +|++|=.|..=.+++|+.+.++||..++-- .+ | -+|.||
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL---~H--~---dlP~~L 137 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL---SH--F---EMPYHL 137 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe---cC--C---CCCHHH
Confidence 4679999999999999999999999999997 667888887778999999999999766541 01 2 489999
Q ss_pred cccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCce
Q 006845 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPI 142 (629)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpI 142 (629)
..++-+-.-|..-..|.++++.-++++..+++-+.-=|...+
T Consensus 138 ~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 138 VTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred HHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 865555555555567788888877777777766543355443
No 36
>PLN02849 beta-glucosidase
Probab=97.16 E-value=0.00053 Score=77.61 Aligned_cols=113 Identities=11% Similarity=0.127 Sum_probs=85.9
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCccccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (629)
-..|+++|+.||++|+|+-|+-|.|+..+|. .|.+|-.|..=.+++|+.+.++||..++-- + =| -+|.||.
T Consensus 78 YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL----~-H~---dlP~~L~ 149 (503)
T PLN02849 78 YHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL----F-HY---DHPQYLE 149 (503)
T ss_pred HHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee----c-CC---CCcHHHH
Confidence 4678999999999999999999999999996 478888887778999999999999866541 1 12 4899998
Q ss_pred ccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceE
Q 006845 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIV 143 (629)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII 143 (629)
+++-+-.-|..-..|.++++..++++..+++-+.-=|...++
T Consensus 150 ~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~ 191 (503)
T PLN02849 150 DDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIF 191 (503)
T ss_pred HhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhh
Confidence 744555445555677777777777777766655433554443
No 37
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=97.01 E-value=0.0016 Score=73.26 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=75.9
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCccccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (629)
-..|+++++.||++|+|+-|+-|.|+..+|. +|.+|=.|..=.+++|+.+.++||..++-- .+ | -+|.||.
T Consensus 52 yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL---~H--~---dlP~~L~ 123 (467)
T TIGR01233 52 YHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL---HH--F---DTPEALH 123 (467)
T ss_pred hhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec---cC--C---CCcHHHH
Confidence 4678999999999999999999999999996 678888887778999999999999876651 11 2 4899998
Q ss_pred ccCCCeeecCCCHHHHHHHHHHHHHHH
Q 006845 102 AKKPALKLRSSDRAYLQLVERWWGVLL 128 (629)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~ 128 (629)
+ .-+-.-|..-..|.++++..++++.
T Consensus 124 ~-~GGW~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 124 S-NGDFLNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred H-cCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 6 3444444445566677766666664
No 38
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.99 E-value=0.0015 Score=73.54 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCccccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (629)
-..++++++.||++|+|+-|+-|.|+..+|. .|.+|-.|..=.+++|+.+.++||..++-- . -=.+|.||.
T Consensus 53 Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL----~----H~dlP~~L~ 124 (469)
T PRK13511 53 YHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL----H----HFDTPEALH 124 (469)
T ss_pred hhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe----c----CCCCcHHHH
Confidence 3568999999999999999999999999996 578888887778999999999999866541 1 115899998
Q ss_pred ccCCCeeecCCCHHHHHHHHHHHHHHHH
Q 006845 102 AKKPALKLRSSDRAYLQLVERWWGVLLP 129 (629)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~ 129 (629)
++ -+-.-|..-..|.++++..++++..
T Consensus 125 ~~-GGW~n~~~v~~F~~YA~~~~~~fgd 151 (469)
T PRK13511 125 SN-GDWLNRENIDHFVRYAEFCFEEFPE 151 (469)
T ss_pred Hc-CCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 63 3433333345666666666666644
No 39
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.97 E-value=0.0021 Score=69.02 Aligned_cols=103 Identities=21% Similarity=0.262 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCC-CeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccCC
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNLHEPKP-GKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKP 105 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~-G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p 105 (629)
+|.|+.||+.|+|+||.=| | +.|.. |..|.+. ..++.+-|+++||+|+|.. -.-..|- +|
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~~~---~~~~akrak~~Gm~vlldf----------HYSD~Wa---DP 87 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDLED---VIALAKRAKAAGMKVLLDF----------HYSDFWA---DP 87 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHHH---HHHHHHHHHHTT-EEEEEE-----------SSSS-----BT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCHHH---HHHHHHHHHHCCCeEEEee----------cccCCCC---CC
Confidence 5789999999999999977 4 45554 4444443 5556666678999999983 2223333 12
Q ss_pred Ceeec------CCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccC
Q 006845 106 ALKLR------SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG 152 (629)
Q Consensus 106 ~~~~R------~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg 152 (629)
+-... .+-..-.++|..|.+.++..|+. +|=.+-||||-||..
T Consensus 88 g~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~----~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 88 GKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA----AGVTPDMVQVGNEIN 136 (332)
T ss_dssp TB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH----TT--ESEEEESSSGG
T ss_pred CCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH----CCCCccEEEeCcccc
Confidence 22211 13345668899999999999975 366888999999974
No 40
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.0034 Score=69.44 Aligned_cols=114 Identities=14% Similarity=0.245 Sum_probs=71.9
Q ss_pred HhHH-----HHHHHHHHHcCCCEEEEeccCCCCCCC----CCeeeecchhhHHHHHHHHHHcCceEEec----CCCcccc
Q 006845 23 PQHW-----EDRLLRAKALGLNTIQTYVPWNLHEPK----PGKLVFSGIADLVSFLKLCQKLDLLVMLR----PGPYICA 89 (629)
Q Consensus 23 ~~~W-----~~~l~k~ka~G~NtV~~yv~Wn~hEp~----~G~~df~~~~Dl~~fl~~a~~~GL~Vilr----pGPyi~a 89 (629)
...| ++.+..||.+|||+||+++.|..+++- |...+=+-..=|++.|+.|++.||+|++- ||.-.|-
T Consensus 67 ~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~ 146 (407)
T COG2730 67 ESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGH 146 (407)
T ss_pred hhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCc
Confidence 5678 899999999999999999994443553 33331221113889999999999999998 2222221
Q ss_pred cccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCC
Q 006845 90 EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (629)
Q Consensus 90 Ew~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~ 153 (629)
-..|....+.. ....+++..+-++.|+.+.++ .-.||++|+=||.-.
T Consensus 147 ------~~s~~~~~~~~------~~~~~~~~~~~w~~ia~~f~~-----~~~VIg~~~~NEP~~ 193 (407)
T COG2730 147 ------EHSGYTSDYKE------ENENVEATIDIWKFIANRFKN-----YDTVIGFELINEPNG 193 (407)
T ss_pred ------Ccccccccccc------cchhHHHHHHHHHHHHHhccC-----CCceeeeeeecCCcc
Confidence 23344332222 122233333333344444443 569999999999974
No 41
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.45 E-value=0.0041 Score=69.01 Aligned_cols=104 Identities=14% Similarity=0.235 Sum_probs=78.0
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCe--eeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK--LVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~--~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (629)
-..++++++.||+||+|+.|+-|.|+..-|..+. .|=.|..=.+++++.|.++||..++-- . =| -+|.||
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL----~-Hf---d~P~~L 129 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL----Y-HF---DLPLWL 129 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe----c-cc---CCcHHH
Confidence 4568999999999999999999999999996554 888887778999999999999866651 0 12 379999
Q ss_pred cccCCCeeecCCCHHHHHHHHHHHHHHHHhhccc
Q 006845 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (629)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (629)
.+.+-+-.-|..=..|.+.++--|+++-.+++-+
T Consensus 130 ~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W 163 (460)
T COG2723 130 QKPYGGWENRETVDAFARYAATVFERFGDKVKYW 163 (460)
T ss_pred hhccCCccCHHHHHHHHHHHHHHHHHhcCcceEE
Confidence 9854455555555566666665555555455444
No 42
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.78 E-value=0.045 Score=57.26 Aligned_cols=112 Identities=24% Similarity=0.212 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHH---cCceEEecCCCcccccccCCCCccccc--
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK---LDLLVMLRPGPYICAEWDLGGFPAWLL-- 101 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~---~GL~VilrpGPyi~aEw~~GG~P~Wl~-- 101 (629)
+|.|+-+|+.|+|-||+=| |+.---..|.=-=.|..|+.+.+++|++ +||+|++.. -.--.|--
T Consensus 66 qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dF----------HYSDfwaDPa 134 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDF----------HYSDFWADPA 134 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeec----------cchhhccChh
Confidence 6889999999999999854 6654434444444567899999998864 699999983 11112221
Q ss_pred -ccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCC
Q 006845 102 -AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (629)
Q Consensus 102 -~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~ 153 (629)
++.|..-..-+-..-.+++-.|.+..+..+++ +|=-+=||||.||-..
T Consensus 135 kQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~----eGi~pdmVQVGNEtn~ 183 (403)
T COG3867 135 KQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK----EGILPDMVQVGNETNG 183 (403)
T ss_pred hcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH----cCCCccceEeccccCC
Confidence 11233222234445567777888888888776 3556779999999853
No 43
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=95.16 E-value=0.065 Score=57.26 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=70.6
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeccC-------CCCCCC-------CCe-eeecchhhHHHHHHHHHHcCceEEecCCCc
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVPW-------NLHEPK-------PGK-LVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~W-------n~hEp~-------~G~-~df~~~~Dl~~fl~~a~~~GL~VilrpGPy 86 (629)
.++.-++.|++++++|||+|-+-|-+ +-.+|. +|. -.|+- |..+|+.|++.||.|.... .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~Dp---L~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDP---LEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccH---HHHHHHHHHHcCCEEEEEE-Ee
Confidence 37888999999999999999765543 222221 121 12555 9999999999999998774 11
Q ss_pred ccccccC----CCCcccccccCCCeeecC----CCHHH----HHHHHHHHHHHHHhhccccccCCCceEEEeec
Q 006845 87 ICAEWDL----GGFPAWLLAKKPALKLRS----SDRAY----LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (629)
Q Consensus 87 i~aEw~~----GG~P~Wl~~~~p~~~~R~----~~~~y----~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvE 148 (629)
-...... -..|.|+..+.++..... .+..| ..+|+.++..++..|.... +|=++|++
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y-----dvDGIhlD 161 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY-----DVDGIHLD 161 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC-----CCCeEEec
Confidence 1100011 125778764455543332 11112 3566666666666655432 57778877
No 44
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.69 E-value=0.17 Score=47.37 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCEEEEecc----C-----CCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcc
Q 006845 28 DRLLRAKALGLNTIQTYVP----W-----NLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPA 98 (629)
Q Consensus 28 ~~l~k~ka~G~NtV~~yv~----W-----n~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~ 98 (629)
+-++.+|++|.|+|.++.- | ..|.+.|+- ..+- |.++++.|++.||.|++|...- -.|+..---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dl---lge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDL---LGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCH---HHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4467899999999998542 2 334444544 2333 5899999999999999995432 12222234788
Q ss_pred cccccCCCee-------------ecCCCHHHHHHHHHHHHHHHHhh
Q 006845 99 WLLAKKPALK-------------LRSSDRAYLQLVERWWGVLLPKI 131 (629)
Q Consensus 99 Wl~~~~p~~~-------------~R~~~~~y~~~~~~~~~~l~~~l 131 (629)
|+.++ ++.+ .-.-+..|++.+.+-+++++...
T Consensus 79 W~~~~-~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRD-ADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeEC-CCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 98862 3322 11234578877777666665533
No 45
>PRK10150 beta-D-glucuronidase; Provisional
Probab=93.82 E-value=0.26 Score=57.32 Aligned_cols=91 Identities=20% Similarity=0.142 Sum_probs=61.3
Q ss_pred ccceEEEEEeecCC----CCCcceeecccccEEEEEECCCCCCCCCCCeEEEEEecc-ccceeEecc-cccCCccEEEEE
Q 006845 383 MFGFLLYVSEFGGK----DYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERW-SNRALSLPN-FRCGSNISLFVL 456 (629)
Q Consensus 383 ~~GyilYrt~~~~~----~~~~~L~i~~~~D~a~V~vng~~~~~~~~~~~vG~l~~~-~~~~~~lp~-~~~~~~~~L~IL 456 (629)
..|..|||++|..+ .+...|.+.++.-.|.||||| +++|.-.+. ....+.++. ++.++.|+|.|.
T Consensus 63 ~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG---------~~vg~~~~~~~~f~~DIT~~l~~G~~n~L~V~ 133 (604)
T PRK10150 63 YVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNG---------QEVMEHKGGYTPFEADITPYVYAGKSVRITVC 133 (604)
T ss_pred CcccEEEEEEEECCcccCCCEEEEEECcccceEEEEECC---------EEeeeEcCCccceEEeCchhccCCCceEEEEE
Confidence 46889999999764 235688899999999999999 899976542 223455543 333345599999
Q ss_pred EEecCccc---cCCC---------------CCCCCCcccceEeC
Q 006845 457 VENMGRVN---YGPY---------------MFDEKGILSSVYLG 482 (629)
Q Consensus 457 VEn~GRvN---yG~~---------------~~d~KGI~g~V~L~ 482 (629)
|+|.-+.. .|.. ....-||..+|.|-
T Consensus 134 v~n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~ 177 (604)
T PRK10150 134 VNNELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLY 177 (604)
T ss_pred EecCCCcccCCCCccccCCccccccccccccccccCCCceEEEE
Confidence 98853211 1111 12257999999984
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=93.14 E-value=0.27 Score=47.78 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCC-------CCCCee-----eecchhhHHHHHHHHHHcCceEEecCCC
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHE-------PKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE-------p~~G~~-----df~~~~Dl~~fl~~a~~~GL~VilrpGP 85 (629)
-+.+.+.|..+|++|+|+|.+-=++...+ -.+..| .|....|+.++++.|+++||+||+..=|
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 34567777889999999998843332221 122222 4556679999999999999999998544
No 47
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=93.13 E-value=0.15 Score=57.68 Aligned_cols=138 Identities=18% Similarity=0.162 Sum_probs=68.4
Q ss_pred cCCCCCHhHHHHHHHHHH-HcCCCEEEEe-cc---CCCC-C-CCCCe--eeecchhhHHHHHHHHHHcCceEEecCCCcc
Q 006845 17 HYFRILPQHWEDRLLRAK-ALGLNTIQTY-VP---WNLH-E-PKPGK--LVFSGIADLVSFLKLCQKLDLLVMLRPGPYI 87 (629)
Q Consensus 17 Hy~r~p~~~W~~~l~k~k-a~G~NtV~~y-v~---Wn~h-E-p~~G~--~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi 87 (629)
|..-.-++.|+..|+.++ ++||.-||+. ++ .... | ..+|. |||+. ||+++|...++||+..+..|
T Consensus 32 ~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~---lD~i~D~l~~~g~~P~vel~--- 105 (486)
T PF01229_consen 32 RANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTY---LDQILDFLLENGLKPFVELG--- 105 (486)
T ss_dssp -GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HH---HHHHHHHHHHCT-EEEEEE----
T ss_pred chHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHH---HHHHHHHHHHcCCEEEEEEE---
Confidence 333445788999999886 7899999983 22 1111 1 12332 99999 99999999999998777633
Q ss_pred cccccCCCCcccccccCCCeeecC----CCHHHHHHHHHHHHHHHHhhccccccCCCce--EEEeeccccCC---C--CC
Q 006845 88 CAEWDLGGFPAWLLAKKPALKLRS----SDRAYLQLVERWWGVLLPKIAPLLYDIGGPI--VMVQIENEFGS---Y--GD 156 (629)
Q Consensus 88 ~aEw~~GG~P~Wl~~~~p~~~~R~----~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpI--I~~QvENEyg~---~--~~ 156 (629)
-.|.++... ....... .-|.-.+++..++++++.++..+. +.. -| -.+.|.||... + +.
T Consensus 106 -------f~p~~~~~~-~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RY-G~~-ev~~W~fEiWNEPd~~~f~~~~~ 175 (486)
T PF01229_consen 106 -------FMPMALASG-YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRY-GIE-EVSTWYFEIWNEPDLKDFWWDGT 175 (486)
T ss_dssp -------SB-GGGBSS---EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHH-HHH-HHTTSEEEESS-TTSTTTSGGG-
T ss_pred -------echhhhcCC-CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhc-CCc-cccceeEEeCcCCCcccccCCCC
Confidence 244444432 1111110 112223444444444444443321 000 01 14789999865 2 23
Q ss_pred cHHHHHHHHHHHHH
Q 006845 157 DKEYLHHLVTLARA 170 (629)
Q Consensus 157 ~~~y~~~l~~~~~~ 170 (629)
..+|.+.-+..++.
T Consensus 176 ~~ey~~ly~~~~~~ 189 (486)
T PF01229_consen 176 PEEYFELYDATARA 189 (486)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45676655554443
No 48
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.75 E-value=0.54 Score=52.08 Aligned_cols=138 Identities=25% Similarity=0.285 Sum_probs=89.5
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEec-------------cCCCCCCCCCee----eecchhhHHHHHHHHHHcCceEEecCC
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYV-------------PWNLHEPKPGKL----VFSGIADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv-------------~Wn~hEp~~G~~----df~~~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
.+.+-.+.|..++++|||||-.-| +|..-- ||++ .|+- |...|++|++.||.|+...-
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~Dp---La~~I~~AHkr~l~v~aWf~ 136 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDP---LAFVIAEAHKRGLEVHAWFN 136 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCCh---HHHHHHHHHhcCCeeeechh
Confidence 477788999999999999986522 243332 4443 3333 78899999999999999988
Q ss_pred CcccccccCC---CCcccccccCCCeeecCCC----H----HHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCC
Q 006845 85 PYICAEWDLG---GFPAWLLAKKPALKLRSSD----R----AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (629)
Q Consensus 85 Pyi~aEw~~G---G~P~Wl~~~~p~~~~R~~~----~----~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~ 153 (629)
||.-|=-..- --|.|+..+.|+.....++ . ...-+|+.|+..++-.+.... .|-++|.+-=++
T Consensus 137 ~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y-----dvDGIQfDd~fy- 210 (418)
T COG1649 137 PYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY-----DVDGIQFDDYFY- 210 (418)
T ss_pred hcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC-----CCCceecceeec-
Confidence 8776531111 1577777765665443332 1 234567777777766555432 778899987776
Q ss_pred CCCcHHHHHHHHHHHHH
Q 006845 154 YGDDKEYLHHLVTLARA 170 (629)
Q Consensus 154 ~~~~~~y~~~l~~~~~~ 170 (629)
|..+-.|...-...+|.
T Consensus 211 ~~~~~gy~~~~~~~y~~ 227 (418)
T COG1649 211 YPIPFGYDPDTVTLYRY 227 (418)
T ss_pred ccCccccCchHHHHHHh
Confidence 54444454444455554
No 49
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.00 E-value=2.5 Score=49.39 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=40.2
Q ss_pred HHHH-HHHHHcCCCEEEE-eccCCCCCC----CCC-----eeeecchhhHHHHHHHHHHcCceEEecC
Q 006845 27 EDRL-LRAKALGLNTIQT-YVPWNLHEP----KPG-----KLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 27 ~~~l-~k~ka~G~NtV~~-yv~Wn~hEp----~~G-----~~df~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
.++| .-+|++|+|+|.+ +|+..-... .+- .-.|....||.+|++.|+++||.|||..
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3454 7889999999998 776432111 000 0134456799999999999999999983
No 50
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=91.70 E-value=0.11 Score=57.67 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=106.3
Q ss_pred ceeCCEeeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCC-CC---CCCeeeec-chhhHHHHHHHHHHcC
Q 006845 2 FRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLH-EP---KPGKLVFS-GIADLVSFLKLCQKLD 76 (629)
Q Consensus 2 f~~dG~~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~h-Ep---~~G~~df~-~~~Dl~~fl~~a~~~G 76 (629)
|.++++++..++..--+.++-.++-+++|+.|+-+|++++|+.+ +- |+ ++|.-+-. +..-++.|++.|.+.+
T Consensus 4 F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~fi---LDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~ 80 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLFI---LDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLD 80 (587)
T ss_pred EEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEEE---ecCcchhhhhceecccccHHHHHHHhhhcccCc
Confidence 67778877777776667777777889999999999999999962 33 55 34433322 2345899999999999
Q ss_pred ceEEecCCCcccccccCCCC---cccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCC
Q 006845 77 LLVMLRPGPYICAEWDLGGF---PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (629)
Q Consensus 77 L~VilrpGPyi~aEw~~GG~---P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~ 153 (629)
|+|+++ .|.+-=.+||. -.|.-..+|+-.+ .|+.++..-++|+..+++- ++....|.+|-+-||.=+
T Consensus 81 lkvlit---livg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~-----yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 81 LKVLIT---LIVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKP-----YKLDPTIAGWALRNEPLV 150 (587)
T ss_pred ceEEEE---EeecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhh-----hccChHHHHHHhcCCccc
Confidence 999887 24442235552 3355333444322 3566666667777777652 345678999999999322
Q ss_pred --CCCcHHHHHHHHHHHH
Q 006845 154 --YGDDKEYLHHLVTLAR 169 (629)
Q Consensus 154 --~~~~~~y~~~l~~~~~ 169 (629)
-..+..+++|+++++-
T Consensus 151 ~~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 151 EAPISVNNFWDWSGEMYA 168 (587)
T ss_pred cccCChhHHHHHHHHHHH
Confidence 1257789999999873
No 51
>PRK09936 hypothetical protein; Provisional
Probab=91.59 E-value=2.7 Score=44.37 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=46.3
Q ss_pred CCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecch-hhHHHHHHHHHHcCceEEec
Q 006845 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI-ADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 19 ~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~-~Dl~~fl~~a~~~GL~Vilr 82 (629)
.+++++.|++.++.+|+.||+|+-+ -|... |.=||.+. --|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 3688999999999999999999755 45444 11177753 35899999999999999997
No 52
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=91.34 E-value=0.65 Score=57.35 Aligned_cols=89 Identities=21% Similarity=0.231 Sum_probs=60.9
Q ss_pred cceEEEEEeecCC----CCCcceeecccccEEEEEECCCCCCCCCCCeEEEEEecc-ccceeEecccccCCccEEEEEEE
Q 006845 384 FGFLLYVSEFGGK----DYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERW-SNRALSLPNFRCGSNISLFVLVE 458 (629)
Q Consensus 384 ~GyilYrt~~~~~----~~~~~L~i~~~~D~a~V~vng~~~~~~~~~~~vG~l~~~-~~~~~~lp~~~~~~~~~L~ILVE 458 (629)
.|--+||++|..+ .+...|.+.++...|.||||| +++|.-.+. ....+.++.....+.|+|.|.|.
T Consensus 108 n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG---------~~VG~~~g~~~pfefDIT~~l~~G~N~LaV~V~ 178 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNG---------QYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVM 178 (1021)
T ss_pred CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEECC---------EEeccccCCCccEEEEcchhhCCCccEEEEEEE
Confidence 3667999999754 234678899999999999999 899975432 23345555322335699999998
Q ss_pred ecCccccCCCCCC-----CCCcccceEeCCE
Q 006845 459 NMGRVNYGPYMFD-----EKGILSSVYLGGK 484 (629)
Q Consensus 459 n~GRvNyG~~~~d-----~KGI~g~V~L~g~ 484 (629)
+... +.++.+ .-||..+|.|--.
T Consensus 179 ~~~d---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 179 QWAD---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred ecCC---CCccccCCccccccccceEEEEEe
Confidence 5432 222221 4799999998543
No 53
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=91.05 E-value=0.7 Score=57.08 Aligned_cols=87 Identities=20% Similarity=0.228 Sum_probs=58.6
Q ss_pred cceEEEEEeecCCC----C-CcceeecccccEEEEEECCCCCCCCCCCeEEEEEecc-ccceeEecccccCCccEEEEEE
Q 006845 384 FGFLLYVSEFGGKD----Y-GSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERW-SNRALSLPNFRCGSNISLFVLV 457 (629)
Q Consensus 384 ~GyilYrt~~~~~~----~-~~~L~i~~~~D~a~V~vng~~~~~~~~~~~vG~l~~~-~~~~~~lp~~~~~~~~~L~ILV 457 (629)
.|-.+||++|..+. + ...|.+.++.-.+.||||| +++|.-.+- ....+.++.....+.|+|.|.|
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG---------~~VG~~~g~~~pfefDIT~~l~~G~N~L~V~V 189 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNG---------RWVGYSQDSRLPAEFDLSPFLRAGENRLAVMV 189 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECC---------EEEEeecCCCceEEEEChhhhcCCccEEEEEE
Confidence 57889999997642 2 4678889999999999999 899976432 1234555432233578999988
Q ss_pred EecCccccCCCCCC-----CCCcccceEeC
Q 006845 458 ENMGRVNYGPYMFD-----EKGILSSVYLG 482 (629)
Q Consensus 458 En~GRvNyG~~~~d-----~KGI~g~V~L~ 482 (629)
..--. |.++.+ ..||..+|.|-
T Consensus 190 ~~~sd---gs~~e~qd~w~~sGI~R~V~L~ 216 (1027)
T PRK09525 190 LRWSD---GSYLEDQDMWRMSGIFRDVSLL 216 (1027)
T ss_pred EecCC---CCccccCCceeeccccceEEEE
Confidence 53221 222221 36999999884
No 54
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=90.54 E-value=5.7 Score=41.25 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=76.1
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEe-cCCCcccccccCCCCccccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML-RPGPYICAEWDLGGFPAWLL 101 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vil-rpGPyi~aEw~~GG~P~Wl~ 101 (629)
...|++.|+.++++|+..|++.+. ..| ..+...+++. .++.++.++++++||.|.. .+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~-~~~-~~~~~~~~~~-~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVD-ETD-DRLSRLDWSR-EQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecC-Ccc-chhhccCCCH-HHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 467999999999999999999532 222 2234445543 4688999999999998753 3211 01111
Q ss_pred ccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCCC-Cc-------HHHHHHHHHHHHHhcC
Q 006845 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG-DD-------KEYLHHLVTLARAHLG 173 (629)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~-~~-------~~y~~~l~~~~~~~~G 173 (629)
+-..|+.-+++..+.+++.++..+.+ |.++|.+- ..++. ++ .+ .+.++.|.+.+++ .|
T Consensus 81 -------l~~~~~~~r~~~~~~~~~~i~~a~~l----G~~~v~~~-~~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~-~G 146 (279)
T TIGR00542 81 -------LGSKDKAVRQQGLEIMEKAIQLARDL----GIRTIQLA-GYDVY-YEEHDEETRRRFREGLKEAVELAAR-AQ 146 (279)
T ss_pred -------CCCcCHHHHHHHHHHHHHHHHHHHHh----CCCEEEec-Ccccc-cCcCCHHHHHHHHHHHHHHHHHHHH-cC
Confidence 11235666666666777777777765 56666542 11110 11 11 2355566666666 57
Q ss_pred CceEE
Q 006845 174 KDIIL 178 (629)
Q Consensus 174 ~~v~l 178 (629)
+.+-|
T Consensus 147 v~l~l 151 (279)
T TIGR00542 147 VTLAV 151 (279)
T ss_pred CEEEE
Confidence 75544
No 55
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=90.44 E-value=0.77 Score=49.23 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=46.9
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEe-------ccCCCCCCCCCeeeec--chhhHHHHHHHHHHcCceEEecC
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTY-------VPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~y-------v~Wn~hEp~~G~~df~--~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
.++.-++.|+.+++.|+|+|-+- |.+..-.|..-+..-. ...|+.++++.++++||++|.|.
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 35778999999999999999874 4455544433333222 24799999999999999999994
No 56
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=90.23 E-value=0.46 Score=45.28 Aligned_cols=67 Identities=16% Similarity=0.060 Sum_probs=47.2
Q ss_pred CCCceEEEEEEEecCCCCccceeEeeCCC-ceEEEEEcCcccccccCCCccceeecccceEEEeccccccCCc-eeEE
Q 006845 533 TKEPAFYVGRFSIDKVNQVKDTYLSFSGW-GKGIAFVNEFNLGRFWPVKFFLISYMQLSLIVYCYGVVIGPFA-VFWT 608 (629)
Q Consensus 533 ~~~p~fYr~tF~l~~~~~~~DTfLd~sgw-gKG~v~VNG~nlGRYWp~iGPQ~~~~~~~~~~~~p~~~l~~~~-~~~~ 608 (629)
..+..+||.+|++|.......++|.+.+. ....|||||.-+|+-.....| -.+=|+. .|+|+. +.++
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~~--------~~~dIt~-~l~~g~~N~l~ 134 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYTP--------FEFDITD-YLKPGEENTLA 134 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTTS---------EEEECGG-GSSSEEEEEEE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCcCC--------eEEeChh-hccCCCCEEEE
Confidence 45789999999998753234688999885 599999999999986522222 1233654 688887 5443
No 57
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=90.10 E-value=0.53 Score=53.22 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=46.2
Q ss_pred ecCCCCC----HhHHH---HHHHHHHHcCCCEEEE-eccCCC-----CCCCCCee--------------eecchhhHHHH
Q 006845 16 LHYFRIL----PQHWE---DRLLRAKALGLNTIQT-YVPWNL-----HEPKPGKL--------------VFSGIADLVSF 68 (629)
Q Consensus 16 ~Hy~r~p----~~~W~---~~l~k~ka~G~NtV~~-yv~Wn~-----hEp~~G~~--------------df~~~~Dl~~f 68 (629)
+|.|-|+ .+.|+ +.|.-+|++|+++|-+ +++-+. |--.+--| .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4555555 34564 5677889999999987 454332 22221111 23456799999
Q ss_pred HHHHHHcCceEEecC
Q 006845 69 LKLCQKLDLLVMLRP 83 (629)
Q Consensus 69 l~~a~~~GL~Vilrp 83 (629)
++.|+++||+||+..
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999984
No 58
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=90.04 E-value=0.12 Score=59.33 Aligned_cols=31 Identities=35% Similarity=0.718 Sum_probs=28.2
Q ss_pred CccCcCCCCccccCCCCChHHHHHHHHHHHhhC
Q 006845 297 DLTSYDYDAPIKESGDVDNPKFKAIRRVVEKFS 329 (629)
Q Consensus 297 ~~TSYDY~Apl~E~G~~t~pKy~~lr~~i~~~~ 329 (629)
.+|||||||||+ |..++|||.++|.++..|.
T Consensus 300 ~atsy~~dap~d--gl~~~pk~ghlk~~hts~d 330 (649)
T KOG0496|consen 300 IATSYDYDAPLD--GLLRQPKYGHLKPLHTSYD 330 (649)
T ss_pred cccccccccccc--hhhcCCCccccccchhhhh
Confidence 589999999999 9999999999999888774
No 59
>PRK01060 endonuclease IV; Provisional
Probab=89.14 E-value=5.7 Score=41.12 Aligned_cols=93 Identities=17% Similarity=0.331 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceE---EecCCCcccccccCCCCcccccc
Q 006845 26 WEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV---MLRPGPYICAEWDLGGFPAWLLA 102 (629)
Q Consensus 26 W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~V---ilrpGPyi~aEw~~GG~P~Wl~~ 102 (629)
+++.|++++++|++.|++.+.- -+.-....++ ..++.++-++++++||.+ .+. +||. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~-p~~~~~~~~~---~~~~~~lk~~~~~~gl~~~~~~~h-~~~~------------~-- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGN-PQQWKRKPLE---ELNIEAFKAACEKYGISPEDILVH-APYL------------I-- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCC-CCCCcCCCCC---HHHHHHHHHHHHHcCCCCCceEEe-cceE------------e--
Confidence 8899999999999999996531 1211111221 224788999999999973 332 2321 1
Q ss_pred cCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEe
Q 006845 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (629)
Q Consensus 103 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~Q 146 (629)
.+-+.|+..+++..+.+++.+...+.+ |-++|-+.
T Consensus 75 -----nl~~~d~~~r~~s~~~~~~~i~~A~~l----ga~~vv~h 109 (281)
T PRK01060 75 -----NLGNPNKEILEKSRDFLIQEIERCAAL----GAKLLVFH 109 (281)
T ss_pred -----cCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEEc
Confidence 123457788888888888888877665 44555553
No 60
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=89.12 E-value=0.53 Score=51.35 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=49.0
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccc
Q 006845 12 IGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (629)
Q Consensus 12 ~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~a 89 (629)
+|=++++...+.+.....|++|+++||..|-| ++|.|+...=+. ...+..+++.|+++||.||+...|=+..
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 56677777778999999999999999998887 789998543222 2358999999999999999997664443
No 61
>PRK05402 glycogen branching enzyme; Provisional
Probab=88.73 E-value=6.8 Score=46.84 Aligned_cols=50 Identities=20% Similarity=0.483 Sum_probs=37.1
Q ss_pred HHHHHHcCCCEEEE-ecc-------CCCCCCCCCee-----eecchhhHHHHHHHHHHcCceEEec
Q 006845 30 LLRAKALGLNTIQT-YVP-------WNLHEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 30 l~k~ka~G~NtV~~-yv~-------Wn~hEp~~G~~-----df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
|.-+|++|+|+|.. +|+ |.+ .+.-| .|....|+.+|++.|+++||.|||.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY---~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGY---QPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCC---CcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 47789999999997 553 221 11111 3445679999999999999999998
No 62
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=88.70 E-value=0.97 Score=51.18 Aligned_cols=113 Identities=10% Similarity=0.168 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHcCCCEEEEeccCCCCCCC---CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCccccc
Q 006845 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPK---PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (629)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~---~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~ 101 (629)
.++++++.||++|++.-|.-|.|+..=|. .+..+-.|..=...+|+...++||...+- ++ -| .+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VT----Lf-Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVT----LF-HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEE----Ee-cC---CCCHHHH
Confidence 68999999999999999999999999885 35688888766788999999999976554 11 13 5899998
Q ss_pred ccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEE
Q 006845 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMV 145 (629)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~ 145 (629)
+.+-+..-+..=.+|.++++--|+++..+++-+.--|.+.|..+
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~ 207 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSI 207 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeee
Confidence 76666555555567888888888888666665533344444443
No 63
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=88.64 E-value=1.4 Score=42.65 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=74.4
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccCCCeee
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKL 109 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~ 109 (629)
|+.++++|+..|+............ ..+++++.++++++||.|+.--.+.. .. .+....
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~------~~--------~~~~~~ 59 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN------FW--------SPDEEN 59 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES------SS--------CTGTTS
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc------cc--------cccccc
Confidence 6789999999999965433222111 34589999999999999665411100 00 111112
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeec--cccCCCC------CcHHHHHHHHHHHHHhcCCceEEEEe
Q 006845 110 RSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE--NEFGSYG------DDKEYLHHLVTLARAHLGKDIILYTT 181 (629)
Q Consensus 110 R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvE--NEyg~~~------~~~~y~~~l~~~~~~~~G~~v~l~t~ 181 (629)
++..++ ++.....+.+.+...+.+ |...+.+..- +...... .-.+.++.|.+.+++ .|+.+.+-+.
T Consensus 60 ~~~~~~-r~~~~~~~~~~i~~a~~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~i~lE~~ 133 (213)
T PF01261_consen 60 GSANDE-REEALEYLKKAIDLAKRL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEE-YGVRIALENH 133 (213)
T ss_dssp TTSSSH-HHHHHHHHHHHHHHHHHH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHH-HTSEEEEE-S
T ss_pred cCcchh-hHHHHHHHHHHHHHHHHh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhh-hcceEEEecc
Confidence 333434 777777778888877776 5667777644 2222211 123466777777777 4777666543
No 64
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=88.22 E-value=9.4 Score=38.90 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.+++.+++++++|++.|+...++ ..++..+.++++++||.|..-
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEEE
Confidence 58899999999999999985432 135789999999999997753
No 65
>PRK14706 glycogen branching enzyme; Provisional
Probab=87.67 E-value=11 Score=44.51 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEE-ecc-------CCCCCCC--CCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 30 LLRAKALGLNTIQT-YVP-------WNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 30 l~k~ka~G~NtV~~-yv~-------Wn~hEp~--~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
+.-+|+||+|+|+. +|. |...-.- .=.-.|....|+.+|++.|+++||.|||.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD 236 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILD 236 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 46789999999996 342 3221100 00012334579999999999999999997
No 66
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=87.16 E-value=2.2 Score=48.57 Aligned_cols=110 Identities=20% Similarity=0.278 Sum_probs=76.9
Q ss_pred ceeCCEeeEEEEEEecCC-----CCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcC
Q 006845 2 FRKDGEPFRIIGGDLHYF-----RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD 76 (629)
Q Consensus 2 f~~dG~~~~~~sg~~Hy~-----r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~G 76 (629)
|.++|.|+++-++.--+. |...+.-+-.|+.++++|+|++|+ |.- |...-+.|.++|.+.|
T Consensus 330 fkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----------GvYEsd~FY~lad~lG 395 (867)
T KOG2230|consen 330 FKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----------GVYESDYFYQLADSLG 395 (867)
T ss_pred EEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----------ccccchhHHHHhhhcc
Confidence 789999999998876542 333555666799999999999998 321 2233589999999999
Q ss_pred ceEEecCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccc
Q 006845 77 LLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENE 150 (629)
Q Consensus 77 L~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENE 150 (629)
|.|--.- =+.||- + ..+..|++-|+.=++.=+.+|..| ..||.+-=.||
T Consensus 396 ilVWQD~-MFACAl-------------Y------Pt~~eFl~sv~eEV~yn~~Rls~H-----pSviIfsgNNE 444 (867)
T KOG2230|consen 396 ILVWQDM-MFACAL-------------Y------PTNDEFLSSVREEVRYNAMRLSHH-----PSVIIFSGNNE 444 (867)
T ss_pred ceehhhh-HHHhhc-------------c------cCcHHHHHHHHHHHHHHHHhhccC-----CeEEEEeCCCc
Confidence 8774331 123442 3 347789988887666666666654 57877766555
No 67
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.05 E-value=8.3 Score=39.79 Aligned_cols=129 Identities=19% Similarity=0.138 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec-CCCcccccccCCCCcccccc
Q 006845 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGFPAWLLA 102 (629)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr-pGPyi~aEw~~GG~P~Wl~~ 102 (629)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++.++-++++++||.|..- ++ +.-.
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~---- 78 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRR---- 78 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccC----
Confidence 47999999999999999999643 2221 11122333 346899999999999987532 11 1100
Q ss_pred cCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCCC------CcHHHHHHHHHHHHHhcCCce
Q 006845 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG------DDKEYLHHLVTLARAHLGKDI 176 (629)
Q Consensus 103 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~------~~~~y~~~l~~~~~~~~G~~v 176 (629)
+ .+.+.|+.-+++..+.+++++...+.+ |.++|.+---..+.... .-.+.++.|.+.+++ .|+.+
T Consensus 79 -~---~~~~~d~~~r~~~~~~~~~~i~~a~~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~l 149 (284)
T PRK13210 79 -F---PFGSRDPATRERALEIMKKAIRLAQDL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAA-AQVML 149 (284)
T ss_pred -c---CCCCCCHHHHHHHHHHHHHHHHHHHHh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHH-hCCEE
Confidence 0 122456666666666677777766665 55665442100000000 112456666677766 47654
Q ss_pred EE
Q 006845 177 IL 178 (629)
Q Consensus 177 ~l 178 (629)
-+
T Consensus 150 ~l 151 (284)
T PRK13210 150 AV 151 (284)
T ss_pred EE
Confidence 43
No 68
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=86.85 E-value=1.5 Score=52.23 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=44.2
Q ss_pred HhHHHHHHHHHHHcCCCEEEE-ecc-------CCCCCC---CCCeeeecchhhHHHHHHHHHHcCceEEecC
Q 006845 23 PQHWEDRLLRAKALGLNTIQT-YVP-------WNLHEP---KPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~-yv~-------Wn~hEp---~~G~~df~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
.+.+++.|..+|++|+|+|.+ +|+ |.++-. .+ .-.|....||.+|++.|+++||.|||..
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 455888999999999999997 332 433311 01 1245556799999999999999999984
No 69
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=84.58 E-value=1 Score=46.28 Aligned_cols=56 Identities=20% Similarity=0.212 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCC--Ceeee-------cchhhHHHHHHHHHHcCceEEec
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNLHEPKP--GKLVF-------SGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~--G~~df-------~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.+.|.-+|++|+|+|.+-=.+...+..- ..-|| ....|+.++++.|+++||+|||-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD 71 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILD 71 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEe
Confidence 4678899999999999843333221111 11122 23469999999999999999997
No 70
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=84.52 E-value=1.8 Score=49.95 Aligned_cols=53 Identities=26% Similarity=0.471 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCEEEE-ecc-------CCCC-----CCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 27 EDRLLRAKALGLNTIQT-YVP-------WNLH-----EPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~-yv~-------Wn~h-----Ep~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.++|.-+|++|+|+|.. +|+ |.+. .+. -.|....|+.+|++.|+++||.|||.
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~---~~~G~~~e~k~lV~~aH~~Gi~VilD 179 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPH---NAYGGPDDLKALVDAAHGLGLGVILD 179 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccc---cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45688999999999997 442 3221 111 13445679999999999999999998
No 71
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=83.34 E-value=9.1 Score=42.27 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=64.7
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEE-------eccCCCCCCCCCeeeecchhhH-HHHHHHHHHcCceEEecCCCcccc
Q 006845 18 YFRILPQHWEDRLLRAKALGLNTIQT-------YVPWNLHEPKPGKLVFSGIADL-VSFLKLCQKLDLLVMLRPGPYICA 89 (629)
Q Consensus 18 y~r~p~~~W~~~l~k~ka~G~NtV~~-------yv~Wn~hEp~~G~~df~~~~Dl-~~fl~~a~~~GL~VilrpGPyi~a 89 (629)
+.+..++.|- +.+|++|+.-|-. +-.|+..-..-.+-+-...+|| .++.+.|+++||++-+=-.+ -
T Consensus 78 p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~ 151 (384)
T smart00812 78 AEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---F 151 (384)
T ss_pred chhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---H
Confidence 3345566665 5788999986543 3346665432222222224554 57888999999988774222 2
Q ss_pred cccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccc
Q 006845 90 EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (629)
Q Consensus 90 Ew~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (629)
+|.. |.|... .+.-..+.+.+.|.++++.|+.+|.+.|.++
T Consensus 152 DW~~---p~y~~~-~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y 192 (384)
T smart00812 152 DWFN---PLYAGP-TSSDEDPDNWPRFQEFVDDWLPQLRELVTRY 192 (384)
T ss_pred HhCC---Cccccc-cccccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 5543 444321 1111223456789999988999998888876
No 72
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=82.35 E-value=2.4 Score=49.44 Aligned_cols=55 Identities=22% Similarity=0.336 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCEEEE-ecc---------------CCCCC-----CCCCeee----ec--chhhHHHHHHHHHHcCceEE
Q 006845 28 DRLLRAKALGLNTIQT-YVP---------------WNLHE-----PKPGKLV----FS--GIADLVSFLKLCQKLDLLVM 80 (629)
Q Consensus 28 ~~l~k~ka~G~NtV~~-yv~---------------Wn~hE-----p~~G~~d----f~--~~~Dl~~fl~~a~~~GL~Vi 80 (629)
+.|.-+|+||+|+|.+ +|+ |.+.- |. +.|- +. ...|+.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999997 443 33221 10 0110 10 13689999999999999999
Q ss_pred ecC
Q 006845 81 LRP 83 (629)
Q Consensus 81 lrp 83 (629)
|..
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 983
No 73
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=82.30 E-value=3.2 Score=44.06 Aligned_cols=69 Identities=13% Similarity=-0.010 Sum_probs=49.3
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCeeeecch--hhHHHHHHHHHHcCceEEecCCCcccc
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~~df~~~--~Dl~~fl~~a~~~GL~VilrpGPyi~a 89 (629)
...+..++.++++|+.||.+=.+.+-...+... -+.|.|+-. -|..++++..+++|++|++..=|+|+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 347778999999999997765444443333322 235555532 389999999999999999987777753
No 74
>PLN02960 alpha-amylase
Probab=81.23 E-value=3.3 Score=49.99 Aligned_cols=57 Identities=25% Similarity=0.228 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEE-ecc-------CCCCCCC--CCeeeecchhhHHHHHHHHHHcCceEEecC
Q 006845 27 EDRLLRAKALGLNTIQT-YVP-------WNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~-yv~-------Wn~hEp~--~G~~df~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
++.|.-+|++|+|+|+. +|+ |.+.-.. .=.-.|....|+.+|++.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45699999999999997 453 4322100 000134445799999999999999999983
No 75
>PRK09505 malS alpha-amylase; Reviewed
Probab=80.62 E-value=3.5 Score=48.79 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCCEEEE-eccCCCCCCC----CC------------------eeeecchhhHHHHHHHHHHcCceEEec
Q 006845 26 WEDRLLRAKALGLNTIQT-YVPWNLHEPK----PG------------------KLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 26 W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~----~G------------------~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
+.+.|.-+|+||+|+|-+ +++=+.|... .| .-.|....|+.++++.|+++||+||+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567889999999999986 4543332211 11 123445679999999999999999998
Q ss_pred C
Q 006845 83 P 83 (629)
Q Consensus 83 p 83 (629)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 4
No 76
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=80.47 E-value=48 Score=34.02 Aligned_cols=127 Identities=16% Similarity=0.202 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCccccccc
Q 006845 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAK 103 (629)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~ 103 (629)
..+++.|+.++++|+..|++..... |+-.+ +++ ..+++++-++++++||.|..- +| . .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~-~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~-~~-~-----~~~~~~~~~-- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRP-HAFAP---DLK-AGGIKQIKALAQTYQMPIIGY-TP-E-----TNGYPYNMM-- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCc-ccccc---ccC-chHHHHHHHHHHHcCCeEEEe-cC-c-----ccCcCcccc--
Confidence 3589999999999999999832110 11011 122 236889999999999987643 21 1 123333222
Q ss_pred CCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeecccc-C-C----CCCcHHHHHHHHHHHHHhcCCce
Q 006845 104 KPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEF-G-S----YGDDKEYLHHLVTLARAHLGKDI 176 (629)
Q Consensus 104 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEy-g-~----~~~~~~y~~~l~~~~~~~~G~~v 176 (629)
..++.-+++..+.+++.+...+.+ |.+.|.+-.-..- . . +..-.+.++.|.+.+++ .|+.+
T Consensus 79 -------~~~~~~r~~~~~~~~~~i~~a~~l----Ga~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~l 145 (275)
T PRK09856 79 -------LGDEHMRRESLDMIKLAMDMAKEM----NAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAEN-IGMDL 145 (275)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHh----CCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-cCCEE
Confidence 123444555555555565555554 4455544221110 0 0 01122456677777776 46644
No 77
>PRK12313 glycogen branching enzyme; Provisional
Probab=80.09 E-value=3.4 Score=48.48 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=37.7
Q ss_pred HHHHHHcCCCEEEE-ecc-------CCCCCCC--CCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 30 LLRAKALGLNTIQT-YVP-------WNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 30 l~k~ka~G~NtV~~-yv~-------Wn~hEp~--~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
|.-+|++|+|+|.. +|+ |.+.-.. .=.-.|....|+.+|++.|+++||.|||.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 58999999999996 553 3221000 00013555679999999999999999998
No 78
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=79.98 E-value=8.1 Score=42.69 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=42.7
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecC
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
...+.|+++|+.+|++||.....-+- ....+..+ -|...++.|++.|+++.+.+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~~---~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQPD---QLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccHH---HHHHHHHHHHhcCCEEEEEe
Confidence 36899999999999999999888654 22223322 38999999999999999984
No 79
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=79.16 E-value=50 Score=34.15 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=61.4
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHc-CceEEecCCCcccccccCCCCccc
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKL-DLLVMLRPGPYICAEWDLGGFPAW 99 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~-GL~VilrpGPyi~aEw~~GG~P~W 99 (629)
++ ..|++.|+.+|++|+..|++.+........ ......+++++.++++++ ++.+.+. +||.
T Consensus 8 ~~-~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------ 69 (279)
T cd00019 8 AG-FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSVH-APYL------------ 69 (279)
T ss_pred cc-ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------
Confidence 44 789999999999999999997643211111 111345799999999999 7666554 2221
Q ss_pred ccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeecc
Q 006845 100 LLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (629)
Q Consensus 100 l~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvEN 149 (629)
+ .+.+.++.-+++....+++.++..+.+ |-+.|.+...+
T Consensus 70 ~-------~~~~~~~~~r~~~~~~~~~~i~~A~~l----G~~~v~~~~g~ 108 (279)
T cd00019 70 I-------NLASPDKEKREKSIERLKDEIERCEEL----GIRLLVFHPGS 108 (279)
T ss_pred e-------ccCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEECCCC
Confidence 0 112334444555555566666666655 44566665543
No 80
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=79.06 E-value=3.1 Score=47.89 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHHHcCCCEEEE-eccCCCCCCCCCeee----------ecchhhHHHHHHHHHHcCceEEecC
Q 006845 23 PQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLV----------FSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~~d----------f~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
-.-+.+.|.-+|++|+|+|-+ +++=+-.. ...|+ |....|+.++++.|+++||+|||..
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 345677889999999999987 34422110 11222 3455799999999999999999973
No 81
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=78.64 E-value=23 Score=38.36 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=55.9
Q ss_pred ecCCCC---CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecch--hhH--HHHHHHHHHcCceEEecCCCccc
Q 006845 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADL--VSFLKLCQKLDLLVMLRPGPYIC 88 (629)
Q Consensus 16 ~Hy~r~---p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~--~Dl--~~fl~~a~~~GL~VilrpGPyi~ 88 (629)
+|..|+ ..+..++.++++++.||.+=.+.+-+..+.. .+.|+|+.. -|. .++++..++.|++|++..=|+++
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 3678899999999999987666655444433 466666653 377 99999999999999999889988
Q ss_pred cc
Q 006845 89 AE 90 (629)
Q Consensus 89 aE 90 (629)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 82
>PRK12568 glycogen branching enzyme; Provisional
Probab=78.57 E-value=5 Score=47.80 Aligned_cols=57 Identities=18% Similarity=0.340 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEE-ecc-------CCCCCCCCCee----eecchhhHHHHHHHHHHcCceEEecCCC
Q 006845 27 EDRLLRAKALGLNTIQT-YVP-------WNLHEPKPGKL----VFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~-yv~-------Wn~hEp~~G~~----df~~~~Dl~~fl~~a~~~GL~VilrpGP 85 (629)
++.|.-+|++|+|+|+. +|+ |.+.- -|-| .|....|+.+|++.|+++||.|||..=|
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 34468889999999997 442 43211 0111 4555679999999999999999998433
No 83
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=78.39 E-value=2.5 Score=43.69 Aligned_cols=52 Identities=15% Similarity=0.368 Sum_probs=38.6
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCC
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
+...++-|+.+|++||++|++ ..|..+.+- .+..++|+.|+++|++|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~~-~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLPE-EERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS---H-HHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCCH-HHHHHHHHHHHHCCCEEeeccc
Confidence 556788999999999999998 456555553 3578999999999999999966
No 84
>PRK10785 maltodextrin glucosidase; Provisional
Probab=78.25 E-value=4.5 Score=47.17 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCCEEEE-eccCC--CCCCCCCee-----eecchhhHHHHHHHHHHcCceEEec
Q 006845 26 WEDRLLRAKALGLNTIQT-YVPWN--LHEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 26 W~~~l~k~ka~G~NtV~~-yv~Wn--~hEp~~G~~-----df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
-.+.|.-+|++|+|+|-+ +|+=+ .|---...| .|....|+.++++.|++.||+|||.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD 245 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLD 245 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 366788999999999997 56522 121111111 2345579999999999999999997
No 85
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=78.02 E-value=4.8 Score=46.33 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHcCCCEEEE-eccCCCCCCC-CCee----------eecchhhHHHHHHHHHHcCceEEec
Q 006845 24 QHWEDRLLRAKALGLNTIQT-YVPWNLHEPK-PGKL----------VFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~-~G~~----------df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.-+.+.|.-+|++|+|+|-+ +|+ .. +. ...| .|....|+.++++.|+++||+|||.
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~-~~--~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFF-QS--PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCc-CC--CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44677899999999999987 343 10 11 1122 2344579999999999999999996
No 86
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=77.28 E-value=10 Score=40.05 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=47.0
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCCCC--------CCCeeeecch--hhHHHHHHHHHHcCceEEecCCC
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEP--------KPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGP 85 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp--------~~G~~df~~~--~Dl~~fl~~a~~~GL~VilrpGP 85 (629)
..+.-++.++++|+.||.+=.+.+-...|.- .-+.|+|+-. -|..++++..++.|++|++..=|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 4677899999999999986666554333321 2346666533 48999999999999999988533
No 87
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=77.24 E-value=4.4 Score=47.34 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=42.1
Q ss_pred HhHHHHHHHHHHHcCCCEEEE-ecc-------CCCCCCCCCee------eecchhhHHHHHHHHHHcCceEEec
Q 006845 23 PQHWEDRLLRAKALGLNTIQT-YVP-------WNLHEPKPGKL------VFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~-yv~-------Wn~hEp~~G~~------df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.+.=.+.|.-+|+||+++|+. +|. |.+- |+. .|..--|+.+||+.|+++||-|||.
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq----~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQ----GTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCC----cceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 455577889999999999997 332 5432 122 2333469999999999999999998
No 88
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.21 E-value=36 Score=35.16 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec-CCCcccccccCCCCcccccc
Q 006845 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGFPAWLLA 102 (629)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr-pGPyi~aEw~~GG~P~Wl~~ 102 (629)
..|++.++.++++|+..|++.+. ..++ .....+++ ..+++++.++++++||.|..- .+.. ..++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC-----
Confidence 36999999999999999999532 1111 01112333 235889999999999987532 1110 0010
Q ss_pred cCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEE
Q 006845 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMV 145 (629)
Q Consensus 103 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~ 145 (629)
+-+.++.-++...+.+++.+...+.+ |.++|.+
T Consensus 86 ------~~~~~~~~r~~~~~~~~~~i~~a~~l----G~~~i~~ 118 (283)
T PRK13209 86 ------LGSEDDAVRAQALEIMRKAIQLAQDL----GIRVIQL 118 (283)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEE
Confidence 11345666666666777777777665 6676654
No 89
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=77.10 E-value=41 Score=34.47 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=37.5
Q ss_pred ecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEe
Q 006845 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (629)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vil 81 (629)
+.|-++| ++++|++++++||..|++.. +. ..|++++.++++++||.|..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 3444444 77889999999999999931 11 14689999999999999864
No 90
>PLN02361 alpha-amylase
Probab=76.77 E-value=6 Score=43.96 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEEeccCCC---CCCCCCee-----eecchhhHHHHHHHHHHcCceEEecC
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNL---HEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~---hEp~~G~~-----df~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
.+.|.-++++|+++|-+.=+... |--.+..| .|....||.++++.|+++||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 55677889999999988533322 21122221 23445799999999999999999973
No 91
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=76.57 E-value=42 Score=34.47 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=64.5
Q ss_pred EEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCee-eecchhhHHHHHHHHHHcCceEEecCCCccccccc
Q 006845 14 GDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKL-VFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWD 92 (629)
Q Consensus 14 g~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~-df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~ 92 (629)
|+-+..+-+ -.+.|+.+.++|++.|++. ..+|..-.- +++ ..+++++.++++++||.|.+. +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 333444444 3478999999999999994 334432110 222 235889999999999987654 2331
Q ss_pred CCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEe
Q 006845 93 LGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (629)
Q Consensus 93 ~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~Q 146 (629)
+.+.+.|+..+++..+++++.+...+.+ |.++|.+.
T Consensus 69 --------------~nl~s~d~~~r~~~~~~l~~~i~~A~~l----Ga~~vv~h 104 (273)
T smart00518 69 --------------INLASPDKEKVEKSIERLIDEIKRCEEL----GIKALVFH 104 (273)
T ss_pred --------------ecCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEEc
Confidence 1123557778888777888888776665 55655553
No 92
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=76.07 E-value=7.8 Score=41.20 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=51.9
Q ss_pred CCCCHhHHHHHHHHHHHcCCC--EEEEeccCCCCCCCCCeeeecc--hhhHHHHHHHHHHcCceEEecCCCccc
Q 006845 19 FRILPQHWEDRLLRAKALGLN--TIQTYVPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLVMLRPGPYIC 88 (629)
Q Consensus 19 ~r~p~~~W~~~l~k~ka~G~N--tV~~yv~Wn~hEp~~G~~df~~--~~Dl~~fl~~a~~~GL~VilrpGPyi~ 88 (629)
.....+.-++.++++++.|+. +|-+-..|. ..-|.|.|+- .-|..++++..++.|+++++..=|+|+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~ 95 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFIN 95 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeC
Confidence 346688899999999999965 666655663 3457676653 348999999999999999998777764
No 93
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=75.81 E-value=56 Score=34.76 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=63.0
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEecc----CCCCCCC----CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccC
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVP----WNLHEPK----PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDL 93 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp~----~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~ 93 (629)
+.+..++.|+.|...|+|.+..|+- +.-+ |+ +|.|. ..|+.++++.|++.||.||...--.-+.|+-.
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~-p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l 90 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGE-PEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQTLGHLEFIL 90 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCC-cccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCCCHHHHHHHH
Confidence 3688899999999999999999752 3222 22 22221 35799999999999999998843222222200
Q ss_pred CCCccccc-cc--CCCeeecCCCHHHHHHHHHHHHHHHHhhc
Q 006845 94 GGFPAWLL-AK--KPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (629)
Q Consensus 94 GG~P~Wl~-~~--~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 132 (629)
-.|.... +. .+...+...+|.=.+-+++.++++++...
T Consensus 91 -~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 91 -KHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred -hCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 0111110 00 01123444566666666666666666543
No 94
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=75.12 E-value=6.7 Score=45.36 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCCEEEE-eccCCCCCCC-CCee----------eecchhhHHHHHHHHHHcCceEEecC
Q 006845 25 HWEDRLLRAKALGLNTIQT-YVPWNLHEPK-PGKL----------VFSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~-~G~~----------df~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
-+.++|.-+|++|+++|-+ +++-+ |. ...| .|....|+.++++.|+++||+||+..
T Consensus 34 gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 34 GVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3568899999999999987 45421 11 1122 23345799999999999999999973
No 95
>PRK09989 hypothetical protein; Provisional
Probab=75.11 E-value=46 Score=34.04 Aligned_cols=44 Identities=16% Similarity=0.324 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
-.+++|++++++||..|++..+|. .+.+++.++++++||.|..-
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~~ 59 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLALF 59 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEEe
Confidence 367899999999999999944332 23678888899999998764
No 96
>PRK14705 glycogen branching enzyme; Provisional
Probab=74.73 E-value=6 Score=49.71 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCEEEE-ecc-------CCCCCC--CCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 28 DRLLRAKALGLNTIQT-YVP-------WNLHEP--KPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 28 ~~l~k~ka~G~NtV~~-yv~-------Wn~hEp--~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
+.|.-+|+||+|+|+. +|+ |.+.-. ..=.-.|....|+.+|++.|+++||.|||.
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD 834 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLD 834 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3468899999999997 452 432110 000113445679999999999999999998
No 97
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=74.72 E-value=6.7 Score=41.98 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=49.6
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCC--eeeecchh--hHHHHHHHHHHcCceEEecCCCcc
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG--KLVFSGIA--DLVSFLKLCQKLDLLVMLRPGPYI 87 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G--~~df~~~~--Dl~~fl~~a~~~GL~VilrpGPyi 87 (629)
..++-++.++++++.||.+=.+.+-|.... ..+ .|+|+-.+ |..++|+.+++.|++|++..=|+|
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 466778999999999988766666655443 344 67666433 899999999999999999865655
No 98
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=73.45 E-value=22 Score=39.38 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=72.2
Q ss_pred ecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCC----Ceeeecch---hhHHHHHHHHHHcCceEEecCCCccc
Q 006845 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKP----GKLVFSGI---ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (629)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~----G~~df~~~---~Dl~~fl~~a~~~GL~VilrpGPyi~ 88 (629)
.+|+.+..+.-.+.+++++++|++.+.+---|....... |.|--+-. .-|..+++.+++.||+.=|...|.++
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 346677788889999999999999999988896542222 44432210 13999999999999998888777665
Q ss_pred ccccC--CCCcccccccCCCee---------ecCCCHHHHHHHHHHHHHHHHh
Q 006845 89 AEWDL--GGFPAWLLAKKPALK---------LRSSDRAYLQLVERWWGVLLPK 130 (629)
Q Consensus 89 aEw~~--GG~P~Wl~~~~p~~~---------~R~~~~~y~~~~~~~~~~l~~~ 130 (629)
+.=.. -..|.|+.. .++.. +-.++|..++++...+.+++..
T Consensus 130 ~~~S~l~~~hPdw~l~-~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~ 181 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLR-DPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLRE 181 (394)
T ss_dssp ESSSCHCCSSBGGBTC-CTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhCccceee-cCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHh
Confidence 43111 147999986 33321 2235777777776666665443
No 99
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=73.25 E-value=12 Score=30.00 Aligned_cols=55 Identities=15% Similarity=0.025 Sum_probs=44.3
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEe
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vil 81 (629)
|....+.++.+.+.|+|...+|++ .++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~--~~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIA--DTSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEE--ecCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 556788899999999999999972 2333 58888876 5678999999999988764
No 100
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=72.72 E-value=44 Score=36.93 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=59.5
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEe----ccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec-CCCcccccccCCCC
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTY----VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGF 96 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~y----v~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr-pGPyi~aEw~~GG~ 96 (629)
|+....+++++++++|+..|+.. ++|..-+. .-..++.++-++++++||.|..- ++-+....+..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~-------e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g-- 100 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQ-------ERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG-- 100 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChh-------HHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCC--
Confidence 34567899999999999999974 22222111 11345789999999999997643 211101111111
Q ss_pred cccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEE
Q 006845 97 PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMV 145 (629)
Q Consensus 97 P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~ 145 (629)
-+-+.|+..+++.-+.+++.+...+.+ |.+.|.+
T Consensus 101 -----------~las~d~~vR~~ai~~~kraId~A~eL----Ga~~v~v 134 (382)
T TIGR02631 101 -----------GFTSNDRSVRRYALRKVLRNMDLGAEL----GAETYVV 134 (382)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHHHHHHHh----CCCEEEE
Confidence 133457777766666667666666654 5554433
No 101
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=71.63 E-value=21 Score=34.33 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEecc--CCCCCC----CCCeeeecchhhHHHHHHHHHHcCceEEec-CCCcccccccCCCC
Q 006845 24 QHWEDRLLRAKALGLNTIQTYVP--WNLHEP----KPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGF 96 (629)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~--Wn~hEp----~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr-pGPyi~aEw~~GG~ 96 (629)
+..++..+.+++.|+..+....+ |..... .+.. .-.....+.+.+++|++.|...|.- +|. .
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------~ 95 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------Y 95 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT----------E
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc----------c
Confidence 45667778889999997775444 433211 1111 1122345899999999999975554 332 0
Q ss_pred cccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCCCCcHHHHHHHHHHHHH
Q 006845 97 PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARA 170 (629)
Q Consensus 97 P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y~~~l~~~~~~ 170 (629)
+.+ .......-++.+.+.+++++++.+++ | +.+-+||..+.......-.+.+.+++++
T Consensus 96 ~~~---------~~~~~~~~~~~~~~~l~~l~~~a~~~----g---v~i~lE~~~~~~~~~~~~~~~~~~~l~~ 153 (213)
T PF01261_consen 96 PSG---------PEDDTEENWERLAENLRELAEIAEEY----G---VRIALENHPGPFSETPFSVEEIYRLLEE 153 (213)
T ss_dssp SSS---------TTSSHHHHHHHHHHHHHHHHHHHHHH----T---SEEEEE-SSSSSSSEESSHHHHHHHHHH
T ss_pred ccc---------cCCCHHHHHHHHHHHHHHHHhhhhhh----c---ceEEEecccCccccchhhHHHHHHHHhh
Confidence 000 01233466777888888888888875 2 4467888887654221003444445544
No 102
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=71.37 E-value=12 Score=44.36 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=75.5
Q ss_pred eeEEEEEEecCCC--CC---HhHHHHHHHHHHHcCCCEEEE---------------eccCCCCCCCCCeeeecchhhHHH
Q 006845 8 PFRIIGGDLHYFR--IL---PQHWEDRLLRAKALGLNTIQT---------------YVPWNLHEPKPGKLVFSGIADLVS 67 (629)
Q Consensus 8 ~~~~~sg~~Hy~r--~p---~~~W~~~l~k~ka~G~NtV~~---------------yv~Wn~hEp~~G~~df~~~~Dl~~ 67 (629)
+.+++.-.+-|-- -| .+.....|+.+|++|+|||-. |++| .|=| |+-|. +++
T Consensus 313 ~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~-----f~~ 384 (671)
T PRK14582 313 PQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADL-----FNR 384 (671)
T ss_pred CEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCC-----cCH
Confidence 4455555444432 22 356788999999999999854 5567 4433 22221 223
Q ss_pred -HHHHHHHcCceEEecCCCcccc---------cccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhcccccc
Q 006845 68 -FLKLCQKLDLLVMLRPGPYICA---------EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYD 137 (629)
Q Consensus 68 -fl~~a~~~GL~VilrpGPyi~a---------Ew~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~ 137 (629)
..+++.+.|++|...-.||-.. +++..+-|.-.. |+-..| -..|..+|++|++.|...|+.+.
T Consensus 385 ~aw~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r--l~P~~pe~r~~i~~i~~dla~~~-- 457 (671)
T PRK14582 385 VAWQLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIH---PEQYRR--LSPFDDRVRAQVGMLYEDLAGHA-- 457 (671)
T ss_pred HHHHHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccC---CCCCcC--CCCCCHHHHHHHHHHHHHHHHhC--
Confidence 4456899999999998888642 111111111111 111112 22466788899999999888763
Q ss_pred CCCceEEEeecccc
Q 006845 138 IGGPIVMVQIENEF 151 (629)
Q Consensus 138 ~ggpII~~QvENEy 151 (629)
+|=++|..-+.
T Consensus 458 ---~~dGilf~Dd~ 468 (671)
T PRK14582 458 ---AFDGILFHDDA 468 (671)
T ss_pred ---CCceEEecccc
Confidence 66677766654
No 103
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=71.13 E-value=12 Score=39.97 Aligned_cols=66 Identities=6% Similarity=-0.017 Sum_probs=48.0
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCC---CCCeeeecch--hhHHHHHHHHHHcCceEEecCCCccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP---KPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp---~~G~~df~~~--~Dl~~fl~~a~~~GL~VilrpGPyi~ 88 (629)
.+.-.+.++++++.+|.+=.+.+-+....- ....|+|.-. -|..++++..+++|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 457788999999999987666655333322 1234555422 38999999999999999998777764
No 104
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=70.79 E-value=70 Score=34.82 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=46.4
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEecc----CCCCCC------CCCeeee-------------------cchhhHHHHHHH
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPGKLVF-------------------SGIADLVSFLKL 71 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp------~~G~~df-------------------~~~~Dl~~fl~~ 71 (629)
+|.+..++.|+.|...++|+...++. |.+--+ +.|.|.- =-..|+.++++.
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 94 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAY 94 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHH
Confidence 57899999999999999999998863 533211 1222221 013579999999
Q ss_pred HHHcCceEEecC
Q 006845 72 CQKLDLLVMLRP 83 (629)
Q Consensus 72 a~~~GL~Vilrp 83 (629)
|++.|+.||..+
T Consensus 95 A~~rgI~VIPEI 106 (357)
T cd06563 95 AAERGITVIPEI 106 (357)
T ss_pred HHHcCCEEEEec
Confidence 999999999873
No 105
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=70.76 E-value=6.6 Score=46.62 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCEEEE-eccCCCCC---CCCC-----ee---e-------e---cchhhHHHHHHHHHHcCceEEec
Q 006845 29 RLLRAKALGLNTIQT-YVPWNLHE---PKPG-----KL---V-------F---SGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 29 ~l~k~ka~G~NtV~~-yv~Wn~hE---p~~G-----~~---d-------f---~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.|.-+|++|+|+|.. +|+=...+ .+.| -| | | ....|+.++++.|+++||.|||.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlD 264 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILD 264 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 478899999999997 45411111 1111 01 1 1 12468999999999999999998
No 106
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=70.06 E-value=10 Score=39.31 Aligned_cols=65 Identities=9% Similarity=0.064 Sum_probs=50.5
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCee--eecc--hhhHHHHHHHHHHcCceEEecCCCcc
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKL--VFSG--IADLVSFLKLCQKLDLLVMLRPGPYI 87 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~--df~~--~~Dl~~fl~~a~~~GL~VilrpGPyi 87 (629)
..++..+.++.+++.||..=.+.+-+...+. .+.| +|+. .-|..++++.+++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 4777899999999999996666666555543 4666 4542 34899999999999999999977776
No 107
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=68.79 E-value=11 Score=40.79 Aligned_cols=68 Identities=4% Similarity=-0.096 Sum_probs=52.2
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecch--hhHHHHHHHHHHcCceEEecCCCccccc
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~--~Dl~~fl~~a~~~GL~VilrpGPyi~aE 90 (629)
..++-++.++++++.||.+=.+.+-+... ...+.|+|+-. -|..++++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 36677899999999999876665554322 34566777643 3899999999999999999988888753
No 108
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=68.20 E-value=11 Score=38.78 Aligned_cols=53 Identities=13% Similarity=0.322 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCC
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGP 85 (629)
....++-++.+|++||++|++ ..|..+++- -|..++|+.++++||+|+-..|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~~-~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEISL-EERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCCH-HHHHHHHHHHHhCCCeEeccccc
Confidence 356677788999999999998 466666654 35889999999999999988664
No 109
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.98 E-value=12 Score=39.95 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=48.6
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCCC--C---CCCeeeecch--hhHHHHHHHHHHcCceEEecCCCccc
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHE--P---KPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE--p---~~G~~df~~~--~Dl~~fl~~a~~~GL~VilrpGPyi~ 88 (629)
..+...+.++++|+.||.+=.+.+-+..+. . .-|.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 367789999999999988655555433333 2 2345666532 38999999999999999998666664
No 110
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=67.91 E-value=9.5 Score=41.14 Aligned_cols=73 Identities=26% Similarity=0.292 Sum_probs=58.3
Q ss_pred EEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCe-eeecchhhHHHHHHHHHHcCceEEecCCCcccc
Q 006845 11 IIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK-LVFSGIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (629)
Q Consensus 11 ~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~-~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~a 89 (629)
.+|=++.+.|.+.+.=..-|++|...||..|-| ++|.|.+.. --|.- +.++++.|+++|++||+...|-|.-
T Consensus 3 ~~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~~---~~ell~~Anklg~~vivDvnPsil~ 75 (360)
T COG3589 3 MLGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFHR---FKELLKEANKLGLRVIVDVNPSILK 75 (360)
T ss_pred ceeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHHH---HHHHHHHHHhcCcEEEEEcCHHHHh
Confidence 356677888999888889999999999998877 677776542 22333 7899999999999999998887765
Q ss_pred c
Q 006845 90 E 90 (629)
Q Consensus 90 E 90 (629)
|
T Consensus 76 ~ 76 (360)
T COG3589 76 E 76 (360)
T ss_pred h
Confidence 5
No 111
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=67.71 E-value=18 Score=45.96 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=63.4
Q ss_pred ecCCCC--CHhHHHHHHHHHHHcCCCEEEE-ecc-CCCC-CC--CCCeee----e----cchhhHHHHHHHHHHc-CceE
Q 006845 16 LHYFRI--LPQHWEDRLLRAKALGLNTIQT-YVP-WNLH-EP--KPGKLV----F----SGIADLVSFLKLCQKL-DLLV 79 (629)
Q Consensus 16 ~Hy~r~--p~~~W~~~l~k~ka~G~NtV~~-yv~-Wn~h-Ep--~~G~~d----f----~~~~Dl~~fl~~a~~~-GL~V 79 (629)
-...++ +-+.|++.|+.+|++|.|+|.. +|+ =... .| -.+.+. | .+..|+.++++.|++. ||++
T Consensus 122 TvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ 201 (1464)
T TIGR01531 122 TVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLS 201 (1464)
T ss_pred eehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEE
Confidence 334453 4588999999999999999986 454 1110 11 112222 3 2567899999999996 9999
Q ss_pred EecCCCcccccccCCC-CcccccccCCCeeecCCCHHHHHHHHH
Q 006845 80 MLRPGPYICAEWDLGG-FPAWLLAKKPALKLRSSDRAYLQLVER 122 (629)
Q Consensus 80 ilrpGPyi~aEw~~GG-~P~Wl~~~~p~~~~R~~~~~y~~~~~~ 122 (629)
|+.. + |+--+ -=.|+.. +|+.-....+.+||+.+-.
T Consensus 202 ilDv---V---~NHTa~ds~Wl~e-HPEa~Yn~~~sP~L~~A~e 238 (1464)
T TIGR01531 202 ITDI---V---FNHTANNSPWLLE-HPEAAYNCITSPHLRPAIV 238 (1464)
T ss_pred EEEe---e---ecccccCCHHHHh-ChHhhcCCCCCchhhhHHH
Confidence 9982 1 22222 2347776 7876665556666655443
No 112
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=67.05 E-value=10 Score=43.93 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=48.5
Q ss_pred HhHHHHHHHHHHHcCCCEEEEe-ccCCCCCCCCCee---eec-----ch----hhHHHHHHHHHHcCceEEecCCCcccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTY-VPWNLHEPKPGKL---VFS-----GI----ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~y-v~Wn~hEp~~G~~---df~-----~~----~Dl~~fl~~a~~~GL~VilrpGPyi~a 89 (629)
.+.-++.|+.|+...||.|+.| ..|.+|.|-|+.= +=+ ++ .=+...|+.|++.|++++.=-- |+|
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynm--iya 194 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNM--IYA 194 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEE--SSE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHh--hhc
Confidence 4577889999999999999999 8999999965544 222 21 2478999999999999876421 333
Q ss_pred cc----cCCCCccccccc
Q 006845 90 EW----DLGGFPAWLLAK 103 (629)
Q Consensus 90 Ew----~~GG~P~Wl~~~ 103 (629)
.- ..|=.|.|.+-.
T Consensus 195 a~~~~~~~gv~~eW~ly~ 212 (559)
T PF13199_consen 195 ANNNYEEDGVSPEWGLYK 212 (559)
T ss_dssp EETT--S--SS-GGBEEE
T ss_pred cccCcccccCCchhhhhh
Confidence 22 234467887753
No 113
>PLN00196 alpha-amylase; Provisional
Probab=66.99 E-value=16 Score=41.02 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEEeccCCC---CCCCCCe-ee-----ecchhhHHHHHHHHHHcCceEEecC
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNL---HEPKPGK-LV-----FSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~---hEp~~G~-~d-----f~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
.+.|.-+|++|+++|-+.=+... |--.+.. |+ |....||.++++.|+++||+||+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 57788899999999988533222 2112221 22 3345699999999999999999984
No 114
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=66.49 E-value=12 Score=39.93 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=53.6
Q ss_pred ecCCCC---CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecch--hhHHHHHHHHHHcCceEEecCCCcccc
Q 006845 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (629)
Q Consensus 16 ~Hy~r~---p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~--~Dl~~fl~~a~~~GL~VilrpGPyi~a 89 (629)
+|..|+ ..++.++.++++++.+|..=.+.+-+.... .-+.|+|+.. -|..++++..++.|++|++..=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 344454 467789999999999998665555433322 3466777543 489999999999999999988888864
No 115
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=65.99 E-value=9.7 Score=48.16 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCEEEE-eccCCCCCCC---CCe-----e----------eec--chhhHHHHHHHHHHcCceEEec
Q 006845 28 DRLLRAKALGLNTIQT-YVPWNLHEPK---PGK-----L----------VFS--GIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 28 ~~l~k~ka~G~NtV~~-yv~Wn~hEp~---~G~-----~----------df~--~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
+.|.-+|++|+|+|.. +|+=...|.. .|. | .|. ...|+.++++.|+++||.|||.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILD 266 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILD 266 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEE
Confidence 4577999999999997 5542222211 110 2 123 5678999999999999999998
No 116
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=65.86 E-value=14 Score=44.52 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=45.8
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEE-eccC----CCCCCC-----CCeeeecchhhHHHHHHHHHHcCceEEecCCC
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQT-YVPW----NLHEPK-----PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~-yv~W----n~hEp~-----~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGP 85 (629)
..-+.+.+.|.-++++|+++|-+ +++= +.|--. .=.-.|.+..|+.+|++.|+++||.||+..=|
T Consensus 13 ~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 13 FTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 34677999999999999999976 3321 111100 00113446789999999999999999998433
No 117
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=65.62 E-value=20 Score=43.70 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=45.7
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEe-ccCCCCCCCCC------eee-------ecchhhHHHHHHHHHHcCceEEecCCC
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTY-VPWNLHEPKPG------KLV-------FSGIADLVSFLKLCQKLDLLVMLRPGP 85 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~y-v~Wn~hEp~~G------~~d-------f~~~~Dl~~fl~~a~~~GL~VilrpGP 85 (629)
..-+.+.+.|.-++++|+|+|-+- ++ +..+| +.| |.+..|+.+|++.|+++||.||+..=|
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 456789999999999999999873 32 11111 112 345679999999999999999998544
No 118
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=64.76 E-value=92 Score=33.62 Aligned_cols=62 Identities=10% Similarity=0.133 Sum_probs=47.7
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEecc----CCCCCC------CCCeee--------ecchhhHHHHHHHHHHcCceEEec
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPGKLV--------FSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp------~~G~~d--------f~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.|.+..++.|+.|...++|++..++- |.+.-+ +.|.+. |=-..|+.++++.|++.|+.||..
T Consensus 15 ~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 15 FTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 47899999999999999999999874 654422 133332 112358999999999999999987
No 119
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=64.75 E-value=59 Score=34.50 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=47.1
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEecc----CCCCCC------CCC----------eeeecchhhHHHHHHHHHHcCceEE
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPG----------KLVFSGIADLVSFLKLCQKLDLLVM 80 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp------~~G----------~~df~~~~Dl~~fl~~a~~~GL~Vi 80 (629)
.+.+..++.|+.|...++|.+..++- |.+--+ +.| .|. ..|+.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT---~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYT---YAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeEC---HHHHHHHHHHHHHcCCEEE
Confidence 46899999999999999999999987 755422 122 222 2479999999999999999
Q ss_pred ecC
Q 006845 81 LRP 83 (629)
Q Consensus 81 lrp 83 (629)
..+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 873
No 120
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=64.29 E-value=15 Score=47.67 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=46.1
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCee----------eecchhhHHHHHHHHHHcCceEEecCCC
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKL----------VFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~----------df~~~~Dl~~fl~~a~~~GL~VilrpGP 85 (629)
-+-+.|.+.|.-+|++|+|+|-+-=.+....-...-| .|.+..|+.++++.|+++||.||+..=|
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3467899999999999999998732222110011112 2445679999999999999999998543
No 121
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=63.65 E-value=13 Score=46.55 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHcCceEEecC
Q 006845 62 IADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 62 ~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
..++.++++.|+++||.|||..
T Consensus 554 i~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEec
Confidence 3689999999999999999983
No 122
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=63.33 E-value=75 Score=34.08 Aligned_cols=67 Identities=6% Similarity=0.046 Sum_probs=46.6
Q ss_pred EEecCCCCCHhHHHHHHHHHHHcCCCEEEEecc--CCCC---CCC---CCee---------------eec---chhhHHH
Q 006845 14 GDLHYFRILPQHWEDRLLRAKALGLNTIQTYVP--WNLH---EPK---PGKL---------------VFS---GIADLVS 67 (629)
Q Consensus 14 g~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~--Wn~h---Ep~---~G~~---------------df~---~~~Dl~~ 67 (629)
-+=|| ++.+..++.|+.|...++|++...+- |.+- .|. .|.+ .-. -..|+.+
T Consensus 9 ~aR~~--~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~e 86 (326)
T cd06564 9 VGRKY--YSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKE 86 (326)
T ss_pred ccCCC--CCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHH
Confidence 33355 47899999999999999999998653 3331 111 0111 001 1358999
Q ss_pred HHHHHHHcCceEEec
Q 006845 68 FLKLCQKLDLLVMLR 82 (629)
Q Consensus 68 fl~~a~~~GL~Vilr 82 (629)
+++.|++.||.||..
T Consensus 87 iv~yA~~rgI~vIPE 101 (326)
T cd06564 87 LIAYAKDRGVNIIPE 101 (326)
T ss_pred HHHHHHHcCCeEecc
Confidence 999999999999987
No 123
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=63.00 E-value=13 Score=45.48 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHcCceEEec
Q 006845 63 ADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 63 ~Dl~~fl~~a~~~GL~Vilr 82 (629)
.++.++++.|+++||.|||.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlD 423 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMD 423 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 47999999999999999998
No 124
>PRK03705 glycogen debranching enzyme; Provisional
Probab=62.27 E-value=12 Score=44.13 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCEEEE-eccCCCCCCC---CC-----ee----------eecc-----hhhHHHHHHHHHHcCceEEec
Q 006845 29 RLLRAKALGLNTIQT-YVPWNLHEPK---PG-----KL----------VFSG-----IADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 29 ~l~k~ka~G~NtV~~-yv~Wn~hEp~---~G-----~~----------df~~-----~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.|.-+|++|+|+|.. +|+=...++. .| -| .|.. ..++.++++.|+++||.|||.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 488999999999997 4431111111 01 01 1211 257999999999999999998
No 125
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=61.64 E-value=20 Score=38.89 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=66.3
Q ss_pred EEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccCCCeeecCCCHHHHHH
Q 006845 40 TIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQL 119 (629)
Q Consensus 40 tV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~ 119 (629)
-|.+.|.|+.+--+ -- =...++.|+++|++|+-- |.=||+ +-..|+.. + ++. ++ +.
T Consensus 32 yvD~fvywsh~~~~------iP---p~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~----l-L~~-~~---~~ 87 (339)
T cd06547 32 YVDTFVYFSHSAVT------IP---PADWINAAHRNGVPVLGT----FIFEWT--GQVEWLED----F-LKK-DE---DG 87 (339)
T ss_pred hhheeecccCcccc------CC---CcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHH----H-hcc-Cc---cc
Confidence 36677788875322 00 147889999999999875 455665 34456654 1 222 11 12
Q ss_pred HHHHHHHHHHhhccccccCCCceEEEeeccccCCCC---CcHHHHHHHHHHHHHh-cCCceEEEEe
Q 006845 120 VERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG---DDKEYLHHLVTLARAH-LGKDIILYTT 181 (629)
Q Consensus 120 ~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~---~~~~y~~~l~~~~~~~-~G~~v~l~t~ 181 (629)
..++.++|+++.+.+-+ .| +.+-+||..+.-. .-.+|++.|++++++. -+..|..|.+
T Consensus 88 ~~~~a~kLv~lak~yGf--DG--w~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs 149 (339)
T cd06547 88 SFPVADKLVEVAKYYGF--DG--WLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDS 149 (339)
T ss_pred chHHHHHHHHHHHHhCC--Cc--eEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEec
Confidence 34666777777776533 23 6677787763111 2245666666666651 1455667754
No 126
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=61.43 E-value=32 Score=39.34 Aligned_cols=160 Identities=18% Similarity=0.367 Sum_probs=89.9
Q ss_pred eeEEEEEEec------CCCCCHhHHHHHHHHH---HHcCCCEEEEecc---CCCCCC----CCCee---eecchh-hH--
Q 006845 8 PFRIIGGDLH------YFRILPQHWEDRLLRA---KALGLNTIQTYVP---WNLHEP----KPGKL---VFSGIA-DL-- 65 (629)
Q Consensus 8 ~~~~~sg~~H------y~r~p~~~W~~~l~k~---ka~G~NtV~~yv~---Wn~hEp----~~G~~---df~~~~-Dl-- 65 (629)
.+.=+||++= ..+++++.=++.|+.+ +-+|+|.+|+.|- .+.++- .|+.| +|+-.+ |.
T Consensus 75 ~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~ 154 (496)
T PF02055_consen 75 TIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKY 154 (496)
T ss_dssp E--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTT
T ss_pred EEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhh
Confidence 4555677653 2345544434444443 4589999999875 232221 23332 232222 32
Q ss_pred -HHHHHHHHHc--CceEEecCCCcccccccCCCCcccccccCCCe----eecC-CCHHHHHHHHHHHHHHHHhhcccccc
Q 006845 66 -VSFLKLCQKL--DLLVMLRPGPYICAEWDLGGFPAWLLAKKPAL----KLRS-SDRAYLQLVERWWGVLLPKIAPLLYD 137 (629)
Q Consensus 66 -~~fl~~a~~~--GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~----~~R~-~~~~y~~~~~~~~~~l~~~l~~~~~~ 137 (629)
-.+|+.|++. +|+++.-| | -.|+|++.. ..+ .++. ..+.|.+..++||.+.++.++++
T Consensus 155 ~ip~ik~a~~~~~~lki~aSp-------W---SpP~WMKtn-~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~--- 220 (496)
T PF02055_consen 155 KIPLIKEALAINPNLKIFASP-------W---SPPAWMKTN-GSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE--- 220 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-------S------GGGBTT-SSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHhCCCcEEEEec-------C---CCCHHHccC-CcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC---
Confidence 3577777653 57887775 4 379999873 222 3442 34679999999999999888864
Q ss_pred CCCceEEEeeccccCC-------CC-------CcHHHHH-HHHHHHHHhcCC--ceEEEEecC
Q 006845 138 IGGPIVMVQIENEFGS-------YG-------DDKEYLH-HLVTLARAHLGK--DIILYTTDG 183 (629)
Q Consensus 138 ~ggpII~~QvENEyg~-------~~-------~~~~y~~-~l~~~~~~~~G~--~v~l~t~dg 183 (629)
|=+|-++-+.||... |. ..++|++ +|..++++ .|. ++.|+..|-
T Consensus 221 -GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~-~~~g~d~kI~~~D~ 281 (496)
T PF02055_consen 221 -GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRK-AGLGKDVKILIYDH 281 (496)
T ss_dssp -T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHT-STT-TTSEEEEEEE
T ss_pred -CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHh-cCCCCceEEEEEec
Confidence 779999999999863 21 2467776 48888887 454 888877653
No 127
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=61.08 E-value=24 Score=37.32 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=67.2
Q ss_pred EEEEEEecCCCCC---HhHH-HHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCC
Q 006845 10 RIIGGDLHYFRIL---PQHW-EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (629)
Q Consensus 10 ~~~sg~~Hy~r~p---~~~W-~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGP 85 (629)
+.+++..|+..-| .... -++|++-.++|.+.+-|-.+ ||.+- +.+|++.|++.|+.+=+.||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~~---~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVDN---FLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHHH---HHHHHHHHHHcCCCCCEEeec
Confidence 5688888876643 2222 23444444699999988443 33333 789999999997764444443
Q ss_pred ccc---------ccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccc
Q 006845 86 YIC---------AEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (629)
Q Consensus 86 yi~---------aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (629)
.-+ .+|..--+|.|+.++.- ....+++...+.--++..+++..|...
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~--~~~~~~~~~~~~gi~~a~~~~~~l~~~ 252 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE--PIKDDDEAVRDYGIELIVEMCQKLLAS 252 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH--hccCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 333 56665668999987311 112334555566666666677666653
No 128
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=60.53 E-value=40 Score=34.84 Aligned_cols=118 Identities=20% Similarity=0.314 Sum_probs=72.2
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCC--CCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (629)
.-.|+++|.-+|++||..|+.-| -|.- --..||+. .-.-.+.+++.+.|+.+ |-+|=- -
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSv----DEsDeRLaRLDWs~-~er~~l~~ai~etgv~i-----pSmClS---------a 77 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSV----DESDERLARLDWSK-EERLALVNAIQETGVRI-----PSMCLS---------A 77 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEec----cchHHHHHhcCCCH-HHHHHHHHHHHHhCCCc-----cchhhh---------h
Confidence 44799999999999999999954 3432 23445553 12556778888999532 223410 1
Q ss_pred cccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCC-C-----CcHHHHHHHHHHHH
Q 006845 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY-G-----DDKEYLHHLVTLAR 169 (629)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~-~-----~~~~y~~~l~~~~~ 169 (629)
++++| +-+.|+.-++.....+.+-+....++ .|--+|+- -|.-| . +.+.|.+-|+...+
T Consensus 78 HRRfP---fGS~D~~~r~~aleiM~KaI~LA~dL------GIRtIQLA-GYDVYYE~~d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 78 HRRFP---FGSKDEATRQQALEIMEKAIQLAQDL------GIRTIQLA-GYDVYYEEADEETRQRFIEGLKWAVE 142 (287)
T ss_pred hccCC---CCCCCHHHHHHHHHHHHHHHHHHHHh------CceeEeec-cceeeeccCCHHHHHHHHHHHHHHHH
Confidence 23344 45889999888888777766655554 34455652 12222 1 34566666665544
No 129
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=60.09 E-value=1.7e+02 Score=31.69 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=79.3
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHH---HHcCceEEecCCCcccccccCCCC-c
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLC---QKLDLLVMLRPGPYICAEWDLGGF-P 97 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a---~~~GL~VilrpGPyi~aEw~~GG~-P 97 (629)
.++..+.-++.+|+.|++.--.|-.|- .|.+=|++-++.. .+.+|...|+ |.+.-. =
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~~ 116 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC--------WANENWTR 116 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhhh
Confidence 478889999999999999999998885 2222255555444 3456666666 332211 1
Q ss_pred ccccccCCCeeecCCCHHHH--HHHHHHHHHHHHhhcc--ccccCCCceEEEeeccccCCCCCcHHHHHHHHHHHHHhcC
Q 006845 98 AWLLAKKPALKLRSSDRAYL--QLVERWWGVLLPKIAP--LLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLG 173 (629)
Q Consensus 98 ~Wl~~~~p~~~~R~~~~~y~--~~~~~~~~~l~~~l~~--~~~~~ggpII~~QvENEyg~~~~~~~y~~~l~~~~~~~~G 173 (629)
.|-.. ..++.+-. .|. +-.++.++.|++.++. ++--+|-||+++=--.+ ..+-++.++.+++.+++ .|
T Consensus 117 ~w~g~-~~~~l~~q---~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~---~pd~~~~~~~wr~~a~~-~G 188 (345)
T PF14307_consen 117 RWDGR-NNEILIEQ---KYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGD---IPDIKEMIERWREEAKE-AG 188 (345)
T ss_pred ccCCC-Cccccccc---cCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECccc---ccCHHHHHHHHHHHHHH-cC
Confidence 12222 12222211 111 1235556667777764 33347889988743322 23667899999999999 68
Q ss_pred CceEEEE
Q 006845 174 KDIILYT 180 (629)
Q Consensus 174 ~~v~l~t 180 (629)
+..+.+.
T Consensus 189 ~~giyii 195 (345)
T PF14307_consen 189 LPGIYII 195 (345)
T ss_pred CCceEEE
Confidence 8755443
No 130
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=59.89 E-value=22 Score=38.43 Aligned_cols=72 Identities=10% Similarity=-0.003 Sum_probs=56.0
Q ss_pred ecCCCC---CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecch--hhHHHHHHHHHHcCceEEecCCCccc
Q 006845 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (629)
Q Consensus 16 ~Hy~r~---p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~--~Dl~~fl~~a~~~GL~VilrpGPyi~ 88 (629)
+|..|+ ..++.++.++++++.+|-+=.+++-|..+. .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 477889999999999998766666666554 3466777643 38899999999999999998888887
No 131
>PRK12677 xylose isomerase; Provisional
Probab=59.88 E-value=1.5e+02 Score=32.85 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=56.9
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeec---chhhHHHHHHHHHHcCceEEe-cCCCcccccccCCCCcc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS---GIADLVSFLKLCQKLDLLVML-RPGPYICAEWDLGGFPA 98 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~---~~~Dl~~fl~~a~~~GL~Vil-rpGPyi~aEw~~GG~P~ 98 (629)
+-.+++.+++++++|+..|+.. .+..--|+.+ ....+.++.+++++.||.|.. .|.-|....+..|
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g---- 99 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG---- 99 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC----
Confidence 3357899999999999999883 1111112111 123488999999999999764 3321111111112
Q ss_pred cccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccc
Q 006845 99 WLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (629)
Q Consensus 99 Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (629)
-+-+.|+..++...+.+++.+...+.+
T Consensus 100 ---------~lts~d~~~R~~Ai~~~~r~IdlA~eL 126 (384)
T PRK12677 100 ---------AFTSNDRDVRRYALRKVLRNIDLAAEL 126 (384)
T ss_pred ---------cCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 233557777777677777777766665
No 132
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=59.16 E-value=20 Score=38.10 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCC---CCCCeeee-c----chhhHHHHHHHHHHcCceEEecC
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHE---PKPGKLVF-S----GIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE---p~~G~~df-~----~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
+..-.++++.+|..|+|++-+-+-=..-| |....++= . -..|+.-||+.|+|+||++|.|.
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 55678899999999999998754321111 22222211 1 12489999999999999999993
No 133
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=57.41 E-value=1.3e+02 Score=30.88 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=48.9
Q ss_pred eeEEEEEEecCC---CCCHhHHHHHHHHHHHcCCCEEEEecc--CCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEe-
Q 006845 8 PFRIIGGDLHYF---RILPQHWEDRLLRAKALGLNTIQTYVP--WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML- 81 (629)
Q Consensus 8 ~~~~~sg~~Hy~---r~p~~~W~~~l~k~ka~G~NtV~~yv~--Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vil- 81 (629)
-+.+..++.|.+ +++++..+..-+.+++.|+. |.+.-+ -|+..|.|.+..-+- ..+.+.+++|++.|..+|.
T Consensus 26 ~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~-ls~h~p~~~nl~s~d~~~r~~~~-~~l~~~i~~A~~lGa~~vv~ 103 (273)
T smart00518 26 SFQLFLGNPRSWKGVRLSEETAEKFKEALKENNID-VSVHAPYLINLASPDKEKVEKSI-ERLIDEIKRCEELGIKALVF 103 (273)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCC-EEEECCceecCCCCCHHHHHHHH-HHHHHHHHHHHHcCCCEEEE
Confidence 345555666654 47788888888889999997 443222 355555544444332 2488899999999997444
Q ss_pred cCC
Q 006845 82 RPG 84 (629)
Q Consensus 82 rpG 84 (629)
.||
T Consensus 104 h~g 106 (273)
T smart00518 104 HPG 106 (273)
T ss_pred ccc
Confidence 443
No 134
>PRK09875 putative hydrolase; Provisional
Probab=57.09 E-value=63 Score=34.41 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLA 102 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~ 102 (629)
.+.-...|+.+|++|.+||-= ..+ ..-.||...+.+++++-|+.||...|-|.-. -.|.|+..
T Consensus 33 ~~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~-----~~p~~~~~ 95 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMRETGINVVACTGYYQDA-----FFPEHVAT 95 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHHHhCCcEEEcCcCCCCc-----cCCHHHhc
Confidence 455567889999999998732 111 1224799999999999999999999988643 26888874
No 135
>PLN02877 alpha-amylase/limit dextrinase
Probab=56.96 E-value=20 Score=44.01 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHcCceEEec
Q 006845 63 ADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 63 ~Dl~~fl~~a~~~GL~Vilr 82 (629)
+++.++++.|+++||.|||.
T Consensus 466 ~efk~mV~~lH~~GI~VImD 485 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLD 485 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 46999999999999999998
No 136
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=56.93 E-value=24 Score=38.11 Aligned_cols=66 Identities=8% Similarity=0.032 Sum_probs=48.7
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecc--hhhHHHHHHHHHHcCceEEecCCCccc
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLVMLRPGPYIC 88 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~--~~Dl~~fl~~a~~~GL~VilrpGPyi~ 88 (629)
..+..++.++++++.||.+=.+.+-+.... .-+.|+|+- .-|..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 467788999999999998655554433332 344566653 238899999999999999988767765
No 137
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=56.63 E-value=93 Score=33.02 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=41.7
Q ss_pred EEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEE-eccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCc
Q 006845 11 IIGGDLHYFRILPQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (629)
Q Consensus 11 ~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPy 86 (629)
+++...-..|.+...=++.-+.+++.||--|.+ ...+..+.-. ..+..+.+.|+++|+-|++..|+.
T Consensus 100 f~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~---------~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 100 FVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDD---------PRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred eeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCCC---------hHHHHHHHHHHHcCCCEEEEeCCC
Confidence 334433444555333444455666689988887 3333333221 127899999999999999987763
No 138
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=55.41 E-value=73 Score=33.15 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=58.6
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCccc---------------------
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYIC--------------------- 88 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~--------------------- 88 (629)
.+++|++|++.|-+ -|.-++-.|.-+ +..+.+=++.|.++||.+|++.|=-.-
T Consensus 79 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~ 152 (250)
T PRK00042 79 AEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAG 152 (250)
T ss_pred HHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHcc
Confidence 46899999999999 465555555433 233444455599999999999773210
Q ss_pred ---cccc---CCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhh
Q 006845 89 ---AEWD---LGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKI 131 (629)
Q Consensus 89 ---aEw~---~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l 131 (629)
++|. -..-|.|.-- .+ ++.+|...+.+.++++..+..+
T Consensus 153 ~~~~~~~~~vIAYEPvWAIG--tG---~~as~~~~~~v~~~Ir~~l~~~ 196 (250)
T PRK00042 153 LSAEQFANLVIAYEPVWAIG--TG---KTATPEQAQEVHAFIRAVLAEL 196 (250)
T ss_pred CCHHHhCCEEEEECCHHHhC--CC---CCCCHHHHHHHHHHHHHHHHHh
Confidence 0011 1123666653 11 3568899999999999887644
No 139
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=54.40 E-value=38 Score=27.16 Aligned_cols=45 Identities=31% Similarity=0.369 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
..++.++++|+.|++.|.+= -|. ++.+ ..++.+++++.||.||..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT----Dh~------~~~~---~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT----DHG------NLFG---AVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe----eCC------cccC---HHHHHHHHHHcCCeEEEE
Confidence 46788999999999999872 222 3444 678999999999988754
No 140
>PLN02784 alpha-amylase
Probab=53.67 E-value=35 Score=41.49 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCC---CCCe-ee----ecchhhHHHHHHHHHHcCceEEecC
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNLHEP---KPGK-LV----FSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp---~~G~-~d----f~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
.+.|..++++|+++|-+.=+.....+ .+.. |+ |....||.++++.|+++||+||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 66788899999999998533222211 1111 11 3335699999999999999999983
No 141
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=52.84 E-value=2.6e+02 Score=30.40 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=47.9
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEecc----CCCCCC------CCCeeeecc---hhhHHHHHHHHHHcCceEEec
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPGKLVFSG---IADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp------~~G~~df~~---~~Dl~~fl~~a~~~GL~Vilr 82 (629)
+|.+..++.|+.|....+|+...++- |.+--+ +.|.|.-.+ ..|+.++++.|++.|+.||..
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 57899999999999999999998863 655432 234332221 357999999999999999987
No 142
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=52.05 E-value=20 Score=39.98 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCEEEE-ecc---CCCCCCCCCee-----eecchhhHHHHHHHHHHcCceEEec
Q 006845 28 DRLLRAKALGLNTIQT-YVP---WNLHEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 28 ~~l~k~ka~G~NtV~~-yv~---Wn~hEp~~G~~-----df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
+.|.-+|.+|+++|-+ +++ -..|---.-.| .|....|+.++++.|++.||+||+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 7889999999999965 232 12222100000 6777889999999999999999987
No 143
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=51.97 E-value=94 Score=34.41 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=72.8
Q ss_pred HHcCCCEEEEecc---CC------------CC---CCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCC
Q 006845 34 KALGLNTIQTYVP---WN------------LH---EPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG 95 (629)
Q Consensus 34 ka~G~NtV~~yv~---Wn------------~h---Ep~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG 95 (629)
|-+|||.+|.-|- ++ .- .+..|.|||+....=..|++.|++.|...++-. .=-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecC
Confidence 4599999998663 32 22 246899999877677889999999999876651 124
Q ss_pred CcccccccCCCe---eec-CCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCC-------C------CcH
Q 006845 96 FPAWLLAKKPAL---KLR-SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY-------G------DDK 158 (629)
Q Consensus 96 ~P~Wl~~~~p~~---~~R-~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~-------~------~~~ 158 (629)
.|.|+++..-.. ... .-.+...++-+.|+..++++++.+ |=+|--+--=||...- | ...
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~----GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a 203 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKW----GINFDYISPFNEPQWNWAGGSQEGCHFTNEEQA 203 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCT----T--EEEEE--S-TTS-GG--SS-B----HHHHH
T ss_pred CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhc----CCccceeCCcCCCCCCCCCCCcCCCCCCHHHHH
Confidence 677777521100 000 113355667777777777777432 5466667777998531 1 246
Q ss_pred HHHHHHHHHHHHhcCCceEEEEecCC
Q 006845 159 EYLHHLVTLARAHLGKDIILYTTDGG 184 (629)
Q Consensus 159 ~y~~~l~~~~~~~~G~~v~l~t~dg~ 184 (629)
+.++.|.+.+++ .|++..+..+|..
T Consensus 204 ~vI~~L~~~L~~-~GL~t~I~~~Ea~ 228 (384)
T PF14587_consen 204 DVIRALDKALKK-RGLSTKISACEAG 228 (384)
T ss_dssp HHHHHHHHHHHH-HT-S-EEEEEEES
T ss_pred HHHHHHHHHHHh-cCCCceEEecchh
Confidence 788899999988 6998777777654
No 144
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=51.62 E-value=4 Score=41.56 Aligned_cols=58 Identities=21% Similarity=0.397 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccc
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~a 89 (629)
-...+.+.++|.+.|.+.++|....+..-.+. ..++.++.+.|++.||.||+. +|..+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~---~~~i~~v~~~~~~~gl~vIlE--~~l~~ 136 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEV---IEEIAAVVEECHKYGLKVILE--PYLRG 136 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHH---HHHHHHHHHHHHTSEEEEEEE--ECECH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHH---HHHHHHHHHHHhcCCcEEEEE--EecCc
Confidence 56688999999999999999966554432222 246999999999999999999 44443
No 145
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=51.30 E-value=1.4e+02 Score=32.26 Aligned_cols=39 Identities=28% Similarity=0.266 Sum_probs=25.0
Q ss_pred ceeCCEeeEEEEEEecCCCCC-HhHHHHHH-HHHHHcCCCEEEE
Q 006845 2 FRKDGEPFRIIGGDLHYFRIL-PQHWEDRL-LRAKALGLNTIQT 43 (629)
Q Consensus 2 f~~dG~~~~~~sg~~Hy~r~p-~~~W~~~l-~k~ka~G~NtV~~ 43 (629)
+.|||||+++|=.. .-+| ...+-+.+ +.+|++|+.-+-+
T Consensus 154 ikVdGKPv~~Iy~p---~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 154 IKVDGKPVFLIYRP---GDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred eeECCEEEEEEECc---ccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 57999999988544 2233 33333333 5779999996554
No 146
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=51.29 E-value=24 Score=36.29 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCEEEEeccCCC-CCCCCCeeeecchhhHHHHHHHHHHcCceEEecC
Q 006845 25 HWEDRLLRAKALGLNTIQTYVPWNL-HEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~-hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
.+++.++.++++|..+|.+...... .+..+-.+... ...+.++.++|+++|+.+.+.|
T Consensus 91 ~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 5567788999999999976322111 01111111111 1358999999999999999986
No 147
>PRK09267 flavodoxin FldA; Validated
Probab=51.04 E-value=92 Score=29.71 Aligned_cols=74 Identities=11% Similarity=0.141 Sum_probs=47.4
Q ss_pred CEeeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 6 GEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 6 G~~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
....++++...|....++..|.+-+++++...++-..+.++ .......-.-.|.. -+..+-+++++.|..++-.
T Consensus 46 ~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaif-g~g~~~~~~~~~~~--~~~~l~~~l~~~g~~~vg~ 119 (169)
T PRK09267 46 AYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALF-GLGDQEDYAEYFCD--AMGTLYDIVEPRGATIVGH 119 (169)
T ss_pred hCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEE-ecCCCCcchHHHHH--HHHHHHHHHHHCCCEEECc
Confidence 34568899999987777889999999888777776666666 22211111111222 2566777788889665443
No 148
>PRK08227 autoinducer 2 aldolase; Validated
Probab=50.84 E-value=33 Score=36.07 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=53.3
Q ss_pred HHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccCCCee
Q 006845 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALK 108 (629)
Q Consensus 29 ~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~ 108 (629)
..+.+-++|..+|.+.++|.. .+.-.-..|+.+..+.|++.||-+|+. | | + -+.+
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs------~~E~~~l~~l~~v~~ea~~~G~Plla~---~----------p----r-G~~~- 153 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGS------EYEHQSIKNIIQLVDAGLRYGMPVMAV---T----------A----V-GKDM- 153 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCcEEEE---e----------c----C-CCCc-
Confidence 467788999999999999972 122334568999999999999998863 1 1 1 1222
Q ss_pred ecCCCHHHHHHHHHHHHHHHHhhcc
Q 006845 109 LRSSDRAYLQLVERWWGVLLPKIAP 133 (629)
Q Consensus 109 ~R~~~~~y~~~~~~~~~~l~~~l~~ 133 (629)
.+++.++.++.|--.+|..-+-|
T Consensus 154 --~~~~~~ia~aaRiaaELGADiVK 176 (264)
T PRK08227 154 --VRDARYFSLATRIAAEMGAQIIK 176 (264)
T ss_pred --CchHHHHHHHHHHHHHHcCCEEe
Confidence 34666888888766666444433
No 149
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=48.96 E-value=21 Score=37.30 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=36.3
Q ss_pred cCCCccccccCc------ccceEEEEEeecCC-------CCCcceeecccccEEEEEECC
Q 006845 371 SENPLSMESVGQ------MFGFLLYVSEFGGK-------DYGSSLLISKVHDRAQVFISC 417 (629)
Q Consensus 371 s~~P~~mE~lgq------~~GyilYrt~~~~~-------~~~~~L~i~~~~D~a~V~vng 417 (629)
...|-++.+++| .+|.+||+-++... .+...|++.++|..|.|||||
T Consensus 68 mpvpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng 127 (297)
T KOG2024|consen 68 MPVPSSFNDIGQDWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNG 127 (297)
T ss_pred cccccchhccccCCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcc
Confidence 345556666665 47999999887653 245788899999999999998
No 150
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=47.92 E-value=49 Score=39.01 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=50.1
Q ss_pred HHHHHcCCCEEEE---ecc---CC--CCCCCCCeeeec---------chhhHHHHHHHHHHcCceEEecCC--------C
Q 006845 31 LRAKALGLNTIQT---YVP---WN--LHEPKPGKLVFS---------GIADLVSFLKLCQKLDLLVMLRPG--------P 85 (629)
Q Consensus 31 ~k~ka~G~NtV~~---yv~---Wn--~hEp~~G~~df~---------~~~Dl~~fl~~a~~~GL~VilrpG--------P 85 (629)
+.++++|+++|-+ |.. |. +---..|-||-+ ..-|++++++.|++.||+||+..= |
T Consensus 81 dyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd 160 (688)
T TIGR02455 81 KALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD 160 (688)
T ss_pred HHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc
Confidence 4889999999986 222 43 222235667633 346999999999999999998721 4
Q ss_pred cccccccCCCCcccc
Q 006845 86 YICAEWDLGGFPAWL 100 (629)
Q Consensus 86 yi~aEw~~GG~P~Wl 100 (629)
|.-||...+-+|.|.
T Consensus 161 F~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 161 FRLAELAHGDYPGLY 175 (688)
T ss_pred hHHHhhcCCCCCCce
Confidence 777777777777776
No 151
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=47.87 E-value=30 Score=38.45 Aligned_cols=67 Identities=10% Similarity=0.202 Sum_probs=46.0
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecch--hhHHHHHHHHHHcCceEEecCCCccccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~--~Dl~~fl~~a~~~GL~VilrpGPyi~aE 90 (629)
.+...+.++.+|+.|+-.=.+.+-..... ..+.|.|+.. -|..++++.++++|++|++..-|+|.-+
T Consensus 42 ~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 42 QDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred HHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 67789999999999998766665433332 3445555432 3899999999999999999987877655
No 152
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=47.85 E-value=26 Score=30.04 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=33.9
Q ss_pred CcceeecccccEEEEEECCCCCCCCCCCeEEEEEeccccceeEecccccCCccEEEEEEEecCcc
Q 006845 399 GSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWSNRALSLPNFRCGSNISLFVLVENMGRV 463 (629)
Q Consensus 399 ~~~L~i~~~~D~a~V~vng~~~~~~~~~~~vG~l~~~~~~~~~lp~~~~~~~~~L~ILVEn~GRv 463 (629)
...|.+.+-....+-|||| +++|.... ...+.++.. ..|.++|++ |+..||.
T Consensus 33 ~l~l~a~~~~~~~~W~vdg---------~~~g~~~~--~~~~~~~~~-~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 33 PLVLKAAGGRGPVYWFVDG---------EPLGTTQP--GHQLFWQPD-RPGEHTLTV-VDAQGRS 84 (89)
T ss_pred eEEEEEeCCCCcEEEEECC---------EEcccCCC--CCeEEeCCC-CCeeEEEEE-EcCCCCE
Confidence 3345555446688999999 88877643 234444331 236788887 8999985
No 153
>PRK14565 triosephosphate isomerase; Provisional
Probab=47.48 E-value=70 Score=33.05 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=56.3
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCC---------------
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG--------------- 94 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~G--------------- 94 (629)
.+++|++|++.|-+ -|.-++-.|+=+. ..+.+=++.|.++||.+|++.|=..- |-+.|
T Consensus 78 ~~mLkd~G~~~vii-----GHSERR~~f~Etd-~~V~~Kv~~al~~gl~pIvCiGE~~e-~r~~~~~~~~~~~Ql~~~l~ 150 (237)
T PRK14565 78 AKMLKECGCSYVIL-----GHSERRSTFHETD-SDIRLKAESAIESGLIPIICVGETLE-DRENGMTKDVLLEQCSNCLP 150 (237)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCcCH-HHHHHHHHHHHHCCCEEEEEcCCCHH-HHHccChHHHHHHHHHHHhc
Confidence 46889999999988 4544444443332 22334448999999999999874321 11112
Q ss_pred --------CCcccccccCCCeeecCCCHHHHHHHHHHHHHH
Q 006845 95 --------GFPAWLLAKKPALKLRSSDRAYLQLVERWWGVL 127 (629)
Q Consensus 95 --------G~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l 127 (629)
+-|.|.-- .+ ++.+|.+.+.+.++++++
T Consensus 151 ~~~~ivIAYEPvWAIG--tG---~~a~~e~i~~~~~~Ir~~ 186 (237)
T PRK14565 151 KHGEFIIAYEPVWAIG--GS---TIPSNDAIAEAFEIIRSY 186 (237)
T ss_pred CCCCEEEEECCHHHhC--CC---CCCCHHHHHHHHHHHHHh
Confidence 22666653 11 378999999999988876
No 154
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=47.16 E-value=1e+02 Score=32.29 Aligned_cols=74 Identities=20% Similarity=0.200 Sum_probs=53.4
Q ss_pred eeCCEeeEEEEEEecCCCC-CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeec--chhhHHHHHHHHHHcCceE
Q 006845 3 RKDGEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLV 79 (629)
Q Consensus 3 ~~dG~~~~~~sg~~Hy~r~-p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~--~~~Dl~~fl~~a~~~GL~V 79 (629)
.+.+.+++++.|= --+ .++.-.+.-+++|++|+..++.|++=+.-.| +.|. +..-+..+-+.|++.||.+
T Consensus 22 ~~g~~~~~~iaGP---Csie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l~~~~~~~Gl~~ 94 (266)
T PRK13398 22 VIGGEEKIIIAGP---CAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKILKEVGDKYNLPV 94 (266)
T ss_pred EEcCCCEEEEEeC---CcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHHHHHHHHcCCCE
Confidence 3444577777771 112 3778888899999999999999976533332 3554 3456888999999999999
Q ss_pred EecC
Q 006845 80 MLRP 83 (629)
Q Consensus 80 ilrp 83 (629)
+-.|
T Consensus 95 ~te~ 98 (266)
T PRK13398 95 VTEV 98 (266)
T ss_pred EEee
Confidence 8874
No 155
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=46.15 E-value=15 Score=34.51 Aligned_cols=28 Identities=29% Similarity=0.686 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHcCceEEecCCCcccccc
Q 006845 63 ADLVSFLKLCQKLDLLVMLRPGPYICAEW 91 (629)
Q Consensus 63 ~Dl~~fl~~a~~~GL~VilrpGPyi~aEw 91 (629)
.||.-+|+.|++.|+.|++-.-| +++.|
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~w 63 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKW 63 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHH
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHH
Confidence 58999999999999998877555 55554
No 156
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=45.89 E-value=39 Score=34.98 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=38.6
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCC
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
.+++|++|++.|-+ -|.-++--|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 45899999999999 455444445444 45788999999999999999965
No 157
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.29 E-value=50 Score=35.75 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=50.3
Q ss_pred ecCCCC---CHhHHHHHHHHHHHcCCCEEEEec----------cCCCCCCC---------CCeeeecc---hhhHHHHHH
Q 006845 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYV----------PWNLHEPK---------PGKLVFSG---IADLVSFLK 70 (629)
Q Consensus 16 ~Hy~r~---p~~~W~~~l~k~ka~G~NtV~~yv----------~Wn~hEp~---------~G~~df~~---~~Dl~~fl~ 70 (629)
+|..|+ ..++-++.++++++.||.+=.+.+ .|+...-. -+.++|.. .-|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455553 367788999999999998766655 24432211 13334431 127999999
Q ss_pred HHHHcCceEEecCCCccc
Q 006845 71 LCQKLDLLVMLRPGPYIC 88 (629)
Q Consensus 71 ~a~~~GL~VilrpGPyi~ 88 (629)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998777775
No 158
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=44.54 E-value=52 Score=37.20 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=45.8
Q ss_pred ecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
..|-+.|.+.-++.++++.++|+..|+++++-|.. .++...++.|+++|+.|.+.
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 34666777888999999999999999998876654 25899999999999998776
No 159
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=44.29 E-value=54 Score=29.71 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=32.5
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEE
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vi 80 (629)
+|++...+.++.++++|+..|-+.- | ..-++++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~---------g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQP---------G-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-T---------T-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEc---------c-------hHHHHHHHHHHHcCCEEE
Confidence 5789999999999999999876632 2 225799999999999976
No 160
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=43.40 E-value=3.6e+02 Score=27.21 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=38.5
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
+...+++.+++++++|+..|++.- .+.+..+. .+++++.++++++||.+...
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~~-~~~~~l~~~l~~~gl~i~~~ 64 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPADY-KELAELKELLADYGLEITSL 64 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCchh-hhHHHHHHHHHHcCcEEEee
Confidence 456688999999999999999865 12222221 12799999999999998764
No 161
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=43.24 E-value=34 Score=41.03 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=49.0
Q ss_pred ecCCCCC---HhHHHHHHHHHHHcCCC--EEEEeccCCCCCCCCCeeeec----chhhHHHHHHHHHHcCceEEecCCCc
Q 006845 16 LHYFRIL---PQHWEDRLLRAKALGLN--TIQTYVPWNLHEPKPGKLVFS----GIADLVSFLKLCQKLDLLVMLRPGPY 86 (629)
Q Consensus 16 ~Hy~r~p---~~~W~~~l~k~ka~G~N--tV~~yv~Wn~hEp~~G~~df~----~~~Dl~~fl~~a~~~GL~VilrpGPy 86 (629)
+|..|+- -+.-++..+.+++||++ +.-+-+.| .++.=||+ ...++..|++-.++.|+++|+.+-|+
T Consensus 300 f~~~RwgY~nls~~~dvv~~~~~agiPld~~~~DiDy-----Md~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~ 374 (805)
T KOG1065|consen 300 FQLCRWGYKNLSVVRDVVENYRAAGIPLDVIVIDIDY-----MDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPF 374 (805)
T ss_pred ceecccccccHHHHHHHHHHHHHcCCCcceeeeehhh-----hhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCc
Confidence 4555543 55678999999999999 44444444 33333454 23468999999999999999987777
Q ss_pred ccc
Q 006845 87 ICA 89 (629)
Q Consensus 87 i~a 89 (629)
|..
T Consensus 375 is~ 377 (805)
T KOG1065|consen 375 IST 377 (805)
T ss_pred ccc
Confidence 753
No 162
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=43.11 E-value=96 Score=33.29 Aligned_cols=119 Identities=22% Similarity=0.181 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccCCC
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPA 106 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~ 106 (629)
..++...++.|.+||---- +-.--||..++.+.+++-||.+|...|.|.-+.| |.|+... |
T Consensus 51 ~~e~~~~~a~Gg~TIVD~T------------~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~-----p~~~~~~-~- 111 (316)
T COG1735 51 IAELKRLMARGGQTIVDAT------------NIGIGRDVLKMRRVAEATGLNIVAATGFYKAAFH-----PEYFALR-P- 111 (316)
T ss_pred HHHHHHHHHcCCCeEeeCC------------ccccCcCHHHHHHHHHHhCCcEEEeccccccccc-----hhHHhhC-C-
Confidence 4456777788999885411 1112479999999999999999999999998885 4777652 2
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCCC-CcHHHHHHHHHHHHHhcCCceEEEE
Q 006845 107 LKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG-DDKEYLHHLVTLARAHLGKDIILYT 180 (629)
Q Consensus 107 ~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~-~~~~y~~~l~~~~~~~~G~~v~l~t 180 (629)
++.+..-+...+..= =.|+-|..=|=-|-|.+. =...-.+.|+.++|++.-..+|+.|
T Consensus 112 -------------i~~~ae~~v~ei~~G---i~gT~ikAGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~t 170 (316)
T COG1735 112 -------------IEELAEFVVKEIEEG---IAGTGIKAGIIKEAGGSPAITPLEEKSLRAAARAHKETGAPIST 170 (316)
T ss_pred -------------HHHHHHHHHHHHHhc---ccCCccccceeeeccCcccCCHHHHHHHHHHHHHhhhcCCCeEE
Confidence 233333344444321 124444444445666654 2455667788888886555677765
No 163
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=42.50 E-value=40 Score=34.67 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeec-chhhHHHHHHHHHHcCceEEecC
Q 006845 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~-~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
+++++.|+.++++|++.|.+.-.-...++.. .=.+. -...+.+++++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 4578889999999999998631100011111 00111 12358889999999999999885
No 164
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=41.95 E-value=38 Score=34.67 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecC
Q 006845 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
+..++.++.++++|+.+|.+...+..-...+.+..-.....+.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 457888999999999999874433211111111111112357888899999999999986
No 165
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=41.20 E-value=66 Score=34.07 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=43.3
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCC--CCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP--KPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp--~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
++..++.++.+++.|.+.|.+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+.
T Consensus 119 ~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 119 VEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEE
Confidence 788999999999999999999975432211 12211222 124889999999999998887
No 166
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=40.98 E-value=4.5e+02 Score=29.14 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=57.7
Q ss_pred HhHHHHHHHHHHHc-C-CCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEE-ecCCCcccccccCCCCccc
Q 006845 23 PQHWEDRLLRAKAL-G-LNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM-LRPGPYICAEWDLGGFPAW 99 (629)
Q Consensus 23 ~~~W~~~l~k~ka~-G-~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vi-lrpGPyi~aEw~~GG~P~W 99 (629)
.++..+++.+++.+ + .-.|...++|... .|+.++.++++++||.|. +-|+ .+. -|.
T Consensus 39 ~~e~~~d~~~v~~L~~~~~~v~lH~~~d~~------------~d~~~~~~~l~~~GL~v~~i~p~--~f~------~~~- 97 (378)
T TIGR02635 39 VFEKIEDAALVHRLTGICPTVALHIPWDRV------------EDYEELARYAEELGLKIGAINPN--LFQ------DDD- 97 (378)
T ss_pred HHHHHHHHHHHHhhcCCCCceeeccCCccc------------cCHHHHHHHHHHcCCceeeeeCC--ccC------Ccc-
Confidence 55666777777766 3 3466776777221 358899999999999987 5654 110 011
Q ss_pred ccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccc
Q 006845 100 LLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (629)
Q Consensus 100 l~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (629)
++...+-+.||..++..-++.++.+.+.+.+
T Consensus 98 ----~~~GSLt~pD~~vR~~AIe~~k~~idiA~eL 128 (378)
T TIGR02635 98 ----YKFGSLTHPDKRIRRKAIDHLLECVDIAKKT 128 (378)
T ss_pred ----cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2222466789999988888888887777754
No 167
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=40.91 E-value=90 Score=33.43 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=49.1
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEecc-CCC-CCCCCCe---eeecch----hhHHHHHHHHHHcCceEEecCCCccc
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVP-WNL-HEPKPGK---LVFSGI----ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~-Wn~-hEp~~G~---~df~~~----~Dl~~fl~~a~~~GL~VilrpGPyi~ 88 (629)
+.++-++.++++++.||-+=.+++- |.. ++..-|. ++|+.+ -|..++++..++.|++|++..=|+|+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~ 96 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLA 96 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCcee
Confidence 6778899999999999987666664 633 2333332 244432 38999999999999999998666664
No 168
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=40.89 E-value=4.7e+02 Score=29.42 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCEEEEecc----CCCCCCCCCeeeecchhhHHHHHHHHHHcCceE--EecCCCcccccccCCCCcccc
Q 006845 27 EDRLLRAKALGLNTIQTYVP----WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV--MLRPGPYICAEWDLGGFPAWL 100 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~----Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~V--ilrpGPyi~aEw~~GG~P~Wl 100 (629)
...++.+.+.|+|++++++- |..-... ..++++|.++|+++||.+ ++-=+||..
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~--------~~~~~~f~~~~~~~gi~~~~i~~HapYlI------------ 203 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLS--------DETIDKFKENCKKYNYDPKFILPHGSYLI------------ 203 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCC--------HHHHHHHHHHHHHcCCCcceEEeecCcee------------
Confidence 34678899999999999863 5544433 356999999999998852 333455531
Q ss_pred cccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEe
Q 006845 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (629)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~Q 146 (629)
-+-+.|+.-++...+.|.+-+.+.+.+ |-+.+-+.
T Consensus 204 -------NLASpd~e~rekSv~~~~~eL~rA~~L----Ga~~VV~H 238 (413)
T PTZ00372 204 -------NLANPDKEKREKSYDAFLDDLQRCEQL----GIKLYNFH 238 (413)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEEC
Confidence 122446666666666666666665554 33444444
No 169
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=40.77 E-value=33 Score=29.45 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=24.5
Q ss_pred cCCCceEEEeeccc-cCCCC----------CcHHHHHHHHHHHHHh--cCCceEEEE
Q 006845 137 DIGGPIVMVQIENE-FGSYG----------DDKEYLHHLVTLARAH--LGKDIILYT 180 (629)
Q Consensus 137 ~~ggpII~~QvENE-yg~~~----------~~~~y~~~l~~~~~~~--~G~~v~l~t 180 (629)
++...|.+|+|-|| .+.+. ....|.++|+++++.. ..-+.|+.+
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 34579999999999 66321 1345666666665442 344566643
No 170
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=40.69 E-value=41 Score=40.08 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=39.4
Q ss_pred HHHHHHcCCCEEEE-eccCCCCCCCC--------------------Ceeeecc-----hhhHHHHHHHHHHcCceEEec
Q 006845 30 LLRAKALGLNTIQT-YVPWNLHEPKP--------------------GKLVFSG-----IADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 30 l~k~ka~G~NtV~~-yv~Wn~hEp~~--------------------G~~df~~-----~~Dl~~fl~~a~~~GL~Vilr 82 (629)
|.-+|.+|+++|+. +|+.-..|+.. |.|--+. .+.+..+++.++++||-|||.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 89999999999996 67654444432 2222222 347889999999999999998
No 171
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.65 E-value=33 Score=37.37 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=45.3
Q ss_pred ecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
-++ |.|...-.-..+.++++|.++|.+.++|.-.++. .-+-.-..+|.++.+.|+++||-+++-
T Consensus 99 ~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE 162 (340)
T PRK12858 99 APG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLE 162 (340)
T ss_pred CCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 344 6554443334678999999999999999954331 011223457999999999999998886
No 172
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.38 E-value=4.9e+02 Score=27.87 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=47.3
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEec----cCCCCCC------CCCeee-ecchhhHHHHHHHHHHcCceEEec
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYV----PWNLHEP------KPGKLV-FSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv----~Wn~hEp------~~G~~d-f~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
+|.+..++.|+.|...++|+...++ .|.+--+ +.|... |=-..|+.++++.|++.|+.||..
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPE 87 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPE 87 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEe
Confidence 6799999999999999999999987 4754321 122211 112357999999999999999987
No 173
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.94 E-value=2.4e+02 Score=29.29 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceE--EecCCCcccccccCCCCccccccc
Q 006845 26 WEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV--MLRPGPYICAEWDLGGFPAWLLAK 103 (629)
Q Consensus 26 W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~V--ilrpGPyi~aEw~~GG~P~Wl~~~ 103 (629)
-.+.++.++++|+++|++++-. |+--........+..+|.+.++++++.+ +.-=+||.
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~----P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~---------------- 72 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKS----PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL---------------- 72 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecC----ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee----------------
Confidence 3568999999999999996531 1111111112345788888899999863 33324442
Q ss_pred CCCeeecCCCHHHHHHHHHHHHHHHHhhccc
Q 006845 104 KPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (629)
Q Consensus 104 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (629)
+-+-+.|+.-+++..+.+++.+...+.+
T Consensus 73 ---iNlas~~~~~r~~sv~~~~~~i~~A~~l 100 (274)
T TIGR00587 73 ---INLASPDEEKEEKSLDVLDEELKRCELL 100 (274)
T ss_pred ---eecCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 1122446777777777777776666654
No 174
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=38.80 E-value=25 Score=38.98 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=47.7
Q ss_pred EEEEecCCC-CCHhHHHHHHHHHHHcC--CCEEEEeccCCCCCCCCCeeeecch-hhHHHHHHHHHHcCceEEec
Q 006845 12 IGGDLHYFR-ILPQHWEDRLLRAKALG--LNTIQTYVPWNLHEPKPGKLVFSGI-ADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 12 ~sg~~Hy~r-~p~~~W~~~l~k~ka~G--~NtV~~yv~Wn~hEp~~G~~df~~~-~Dl~~fl~~a~~~GL~Vilr 82 (629)
-.++.+.|+ ...+..++.|++-+..+ -..|-| +|+|..+|. .+|.++.++|+++|.++++.
T Consensus 143 s~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt----------egVfSMdGdiApL~~l~~L~~ky~a~L~VD 207 (388)
T COG0156 143 SRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT----------EGVFSMDGDIAPLPELVELAEKYGALLYVD 207 (388)
T ss_pred CCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE----------eccccCCCCcCCHHHHHHHHHHhCcEEEEE
Confidence 344555554 56788888888877565 455655 899999987 89999999999999988886
No 175
>PRK10658 putative alpha-glucosidase; Provisional
Probab=38.72 E-value=88 Score=37.20 Aligned_cols=67 Identities=13% Similarity=0.020 Sum_probs=47.6
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEe--ccCCCCCCCCCeeeecch--hhHHHHHHHHHHcCceEEecCCCccc
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTY--VPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~y--v~Wn~hEp~~G~~df~~~--~Dl~~fl~~a~~~GL~VilrpGPyi~ 88 (629)
.+.+...+.++++|+.|+-+=.+. ++|.-. -.-+.|.|+-. -|..++++..++.|++|++..=|||.
T Consensus 280 ~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~-~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~ 350 (665)
T PRK10658 280 YDEATVNSFIDGMAERDLPLHVFHFDCFWMKE-FQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIA 350 (665)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEchhhhcC-CceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcC
Confidence 345667888999999998754444 455321 12245555432 38999999999999999999888875
No 176
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=38.57 E-value=89 Score=33.01 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=45.2
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeec---chhhHHHHHHHHHHcCceEEec
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS---GIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~---~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
...+.-++-++-+.++|+.-|-+-.-|...+ ....+||+ ...||.++++-|++.|..|+|.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLW 92 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEE
Confidence 3577889999999999999999999998722 34567776 3579999999999999888887
No 177
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=38.13 E-value=4.5e+02 Score=26.79 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=85.3
Q ss_pred eeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEecc-CCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCc
Q 006845 8 PFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVP-WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (629)
Q Consensus 8 ~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~-Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPy 86 (629)
.+.+++|+.-..|.....-+...+.+.+.|+.+-.+.+. ..+..+ .. ...-.+.++.+..++++-.||+.|
T Consensus 28 kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~--d~---~~~p~v~~l~~~v~~ADgvii~TP--- 99 (219)
T TIGR02690 28 RILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDA--AH---ADHPKVRELRQLSEWSEGQVWCSP--- 99 (219)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCc--Cc---ccCHHHHHHHHHHHhCCEEEEeCC---
Confidence 468899999988888777777778888778876555542 222211 11 112257888888899999999887
Q ss_pred ccccccCCCCcc-------ccccc---------CCCeeecCCCHHHH-HHHHHHHHHHHHhhccccccCCCceEEEeecc
Q 006845 87 ICAEWDLGGFPA-------WLLAK---------KPALKLRSSDRAYL-QLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (629)
Q Consensus 87 i~aEw~~GG~P~-------Wl~~~---------~p~~~~R~~~~~y~-~~~~~~~~~l~~~l~~~~~~~ggpII~~QvEN 149 (629)
|. ++++|. |+.+. .|-..+ ....... .....-++.++..+.-..... .|.+.+..+
T Consensus 100 ---EY-n~sipg~LKNaiDwls~~~~~~~~~~~Kpvaiv-gaSgg~~g~ra~~~LR~vl~~l~a~v~p~--~v~i~~a~~ 172 (219)
T TIGR02690 100 ---ER-HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVM-QVSGGSQSFNAVNILRRLGRWMRMPTIPN--QSSVAKAFD 172 (219)
T ss_pred ---cc-ccCcCHHHHHHHHhcccCcccccccCCCcEEEE-EeCCcHhHHHHHHHHHHHHHHCCCccccc--hhhhhhhHh
Confidence 33 566665 66652 121112 2222222 122223444444444333322 455566677
Q ss_pred ccCCCC--CcHHHHHHHHHHHHH
Q 006845 150 EFGSYG--DDKEYLHHLVTLARA 170 (629)
Q Consensus 150 Eyg~~~--~~~~y~~~l~~~~~~ 170 (629)
+++.-+ .|.+..+.|.+++.+
T Consensus 173 ~fd~~G~l~d~~~~~~l~~~l~~ 195 (219)
T TIGR02690 173 EFDEAGRMKPSDYYDRVVDVMEE 195 (219)
T ss_pred hcCcCCCCCCHHHHHHHHHHHHH
Confidence 776533 566666666666554
No 178
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=37.95 E-value=37 Score=37.49 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=50.9
Q ss_pred CCCHhHHHHHHHHHHHc-CCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 20 RILPQHWEDRLLRAKAL-GLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 20 r~p~~~W~~~l~k~ka~-G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
-+|.+.|+-+|..+.++ -=|||.+-| =|=+.|-=++|+-.= |.+++++|+++||-||..
T Consensus 179 lLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~H---L~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 179 LLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSEDH---LKKIAETAKKLGIMVIAD 238 (447)
T ss_pred ccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHHH---HHHHHHHHHHhCCeEEeh
Confidence 37889999999999987 789998854 377888888888776 999999999999999986
No 179
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=37.83 E-value=86 Score=38.86 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=54.4
Q ss_pred ecCCCC---CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecch--hhHHHHHHHHHHcCceEEecCCCccccc
Q 006845 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (629)
Q Consensus 16 ~Hy~r~---p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~--~Dl~~fl~~a~~~GL~VilrpGPyi~aE 90 (629)
+|..|+ +.+..++.++++++.+|-+=.+++-|.+..- -..|.|+-. -|..++++..++.|+++|+-.-|+|..+
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 444553 3567788999999999998777776665542 334666532 4899999999999999888777777653
No 180
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=37.10 E-value=39 Score=36.34 Aligned_cols=90 Identities=18% Similarity=0.426 Sum_probs=53.4
Q ss_pred EEEEEEec------CCCCCHhHHHHHHHHHHHc-CCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 10 RIIGGDLH------YFRILPQHWEDRLLRAKAL-GLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 10 ~~~sg~~H------y~r~p~~~W~~~l~k~ka~-G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
+..||. | +.+++.+-+++-+++.-.+ |+|-++-| |..-++.. ....++|++|+++|-+.|--
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~iWs 172 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYFIWS 172 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EEEEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceEEee
Confidence 556777 7 4567777788888888776 89888875 55555443 34899999999999887322
Q ss_pred CCCcccccccCC-CCcccccccCCCeeecCCCHHHHHHHHHHHH
Q 006845 83 PGPYICAEWDLG-GFPAWLLAKKPALKLRSSDRAYLQLVERWWG 125 (629)
Q Consensus 83 pGPyi~aEw~~G-G~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~ 125 (629)
+-.++ .+-.|+-. ..++.|++++++|-+
T Consensus 173 -------~~~N~~am~k~~~~--------~~~~~~~~A~~~y~e 201 (324)
T PF08306_consen 173 -------DQNNPIAMEKWFGE--------QRNPEFKDACEKYSE 201 (324)
T ss_dssp ----------GGGHHHHHCCC--------CCSHHHHHHHHHHGG
T ss_pred -------cCCChHHHHHhhhh--------ccCHHHHHHHHHhhh
Confidence 21122 23344432 267889888888533
No 181
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=36.54 E-value=1.2e+02 Score=35.74 Aligned_cols=111 Identities=13% Similarity=0.025 Sum_probs=72.5
Q ss_pred EeeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCc
Q 006845 7 EPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (629)
Q Consensus 7 ~~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPy 86 (629)
++-+.+++..|+++-+.+.=-++|++-.++|...+-|-.+++. +- +.+|++.+++.++.||...-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~~---~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------EL---IEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------HH---HHHHHHHHhcCCCCEEEEeeec
Confidence 4557889999887665554445566666899999999655443 22 7888888887788888876664
Q ss_pred ccc--------cccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhcc
Q 006845 87 ICA--------EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (629)
Q Consensus 87 i~a--------Ew~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 133 (629)
... +|..-=+|.|+.++.-.. . +....+++.-++..+++..|.+
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~~~--~-d~~~~~~~gv~~a~e~i~~l~~ 579 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMRAV--E-DKEEAREEGVAIARELIDAARE 579 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHHhc--C-CchHHHHHHHHHHHHHHHHHHh
Confidence 332 233334788888632111 1 2246677777777777776653
No 182
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=36.46 E-value=48 Score=33.66 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecC
Q 006845 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
+.+++.++.++++|..+|.+...+.--++..-+..-.....+.++.+.|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 678888999999999999874322110000000001112357888999999999999885
No 183
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=36.33 E-value=49 Score=34.51 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCEEEEeccCCC---CCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNL---HEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~---hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
++.+++||++|++.|.+.+- .. ++.--+..+++ +..+.++.|+++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 56788999999999988655 21 11111222333 3567889999999986544
No 184
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.16 E-value=99 Score=32.40 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=41.2
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.|.+.-++++++..+.|+..|+++++-+. ...+...++.|++.|+.|.+.
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEEE
Confidence 45566788999999999999999887665 235889999999999988764
No 185
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=35.87 E-value=1.8e+02 Score=30.31 Aligned_cols=109 Identities=15% Similarity=0.056 Sum_probs=66.1
Q ss_pred eEEEEEEecCCCCC----HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCce--EEec
Q 006845 9 FRIIGGDLHYFRIL----PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL--VMLR 82 (629)
Q Consensus 9 ~~~~sg~~Hy~r~p----~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~--Vilr 82 (629)
.+.+++..|+.+-| .+.=.++|++=.++|.+.+-|-.+ ||.+- +.+|++.|++.|+. |++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~~---~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDNDD---YYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHHH---HHHHHHHHHHcCCCCCEecc
Confidence 46788888777544 222234566777899998888433 34333 88999999999765 4444
Q ss_pred CCCccc-------ccccCCCCcccccccCCCeeecCCC-HHHHHHHHHHHHHHHHhhcc
Q 006845 83 PGPYIC-------AEWDLGGFPAWLLAKKPALKLRSSD-RAYLQLVERWWGVLLPKIAP 133 (629)
Q Consensus 83 pGPyi~-------aEw~~GG~P~Wl~~~~p~~~~R~~~-~~y~~~~~~~~~~l~~~l~~ 133 (629)
.-|-.. .+|..-.+|.|+.++... . .++ ...+++.-++..+++..+..
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~--~-~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLEK--Y-DDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334322 224455689998863211 1 233 34555666666666666654
No 186
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=35.87 E-value=38 Score=40.20 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCEEEE-ec--------cCCCCCC----CCCeeeec----chhhHHHHHHHHHHcCceEEecC
Q 006845 27 EDRLLRAKALGLNTIQT-YV--------PWNLHEP----KPGKLVFS----GIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~-yv--------~Wn~hEp----~~G~~df~----~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
+++|..+|.+|+|+|+. .| .|.++-. .-+.|--. ...++.++++.|+..||.|||..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 45599999999999996 22 2433321 00111000 13489999999999999999983
No 187
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.62 E-value=71 Score=24.74 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceE
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~V 79 (629)
|-.-.+.+.-+.+.|+|.+.++. +...+.....+-|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 45667888899999999988875 3333234555555533 3889999999999765
No 188
>PLN02561 triosephosphate isomerase
Probab=34.46 E-value=77 Score=33.10 Aligned_cols=49 Identities=16% Similarity=-0.018 Sum_probs=37.9
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCC
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
.+++|++|++.|-+ -|.-++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 45889999999998 455555555444 35677888899999999999976
No 189
>PRK15492 triosephosphate isomerase; Provisional
Probab=34.41 E-value=78 Score=33.15 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=37.6
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCC
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
..++|++|++.|-+ -|.-++-.|.-+ +..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFGET-DQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 45899999999999 455555555433 34577788899999999999965
No 190
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=34.29 E-value=2.5e+02 Score=28.93 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=58.6
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCeeeec----chhhHHHHHHHHHHcCceEEecCCCcccccccCCC
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFS----GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG 95 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~~df~----~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG 95 (629)
+.++.-+..-+.+++.|+..+.+-. ..|.+. ++.-|=. ....+.+.|++|++.|..+|.-+|
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~----------- 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG----------- 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC-----------
Confidence 4567777778888899998776421 122211 1111100 122478899999999998775421
Q ss_pred CcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCC
Q 006845 96 FPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (629)
Q Consensus 96 ~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~ 154 (629)
.+.|.. ..++...+.....++++++..+++ | |-+.+||-.+.+
T Consensus 121 ~~~~~~---------~~~~~~~~~~~~~l~~l~~~A~~~-----G--V~i~iE~~~~~~ 163 (283)
T PRK13209 121 YDVYYE---------QANNETRRRFIDGLKESVELASRA-----S--VTLAFEIMDTPF 163 (283)
T ss_pred cccccc---------ccHHHHHHHHHHHHHHHHHHHHHh-----C--CEEEEeecCCcc
Confidence 111211 122444455556667777777654 3 345677754433
No 191
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=34.08 E-value=73 Score=32.19 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=35.1
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecC
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
.+++|++|++.|-+ ++-|.+ |..+ |+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 46899999999998 344555 4433 48999999999999999994
No 192
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=33.97 E-value=2.2e+02 Score=30.93 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=65.5
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEE-------eccCCCCCCCCCeeeecchhhH-HHHHHHHHHcCceEEecCCCccccccc
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQT-------YVPWNLHEPKPGKLVFSGIADL-VSFLKLCQKLDLLVMLRPGPYICAEWD 92 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~-------yv~Wn~hEp~~G~~df~~~~Dl-~~fl~~a~~~GL~VilrpGPyi~aEw~ 92 (629)
..++.| ++.+|++|+.-|-. +..|...-..-.+-+-...+|| .+|.+.|+++||++-+=-.| ++|.
T Consensus 91 fD~dqW---~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~ 164 (346)
T PF01120_consen 91 FDADQW---AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWH 164 (346)
T ss_dssp --HHHH---HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCC
T ss_pred CCHHHH---HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhc
Confidence 445555 45889999996543 3447765443333232234554 57899999999998884221 2444
Q ss_pred CCCCcccccccCCCeeecCCCHHHHHHHH-HHHHHHHHhhccccccCCCceEEEeeccccCCCCCcHHHHHHHHHHHHHh
Q 006845 93 LGGFPAWLLAKKPALKLRSSDRAYLQLVE-RWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAH 171 (629)
Q Consensus 93 ~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~-~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y~~~l~~~~~~~ 171 (629)
....+.-.....+. .....+.+-+.+. .++.+|-+.+.++. -.+|=+-..... ..+.--...+.++.|+
T Consensus 165 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ql~EL~~~Y~----~d~lWfDg~~~~---~~~~~~~~~~~~~i~~- 234 (346)
T PF01120_consen 165 HPDYPPDEEGDENG--PADGPGNWQRYYNEYWLAQLRELLTRYK----PDILWFDGGWPD---PDEDWDSAELYNWIRK- 234 (346)
T ss_dssp CTTTTSSCHCHHCC----HCCHHHHHHHHHHHHHHHHHHHHCST----ESEEEEESTTSC---CCTHHHHHHHHHHHHH-
T ss_pred CcccCCCccCCccc--ccccchhhHhHhhhhhHHHHHHHHhCCC----cceEEecCCCCc---cccccCHHHHHHHHHH-
Confidence 33222221110000 1123344555555 45555555555542 122222211111 1222234777788877
Q ss_pred cCCceEEEE
Q 006845 172 LGKDIILYT 180 (629)
Q Consensus 172 ~G~~v~l~t 180 (629)
+.-++++..
T Consensus 235 ~qp~~ii~~ 243 (346)
T PF01120_consen 235 LQPDVIINN 243 (346)
T ss_dssp HSTTSEEEC
T ss_pred hCCeEEEec
Confidence 344555543
No 193
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=33.81 E-value=3.5e+02 Score=28.22 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 28 ~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
++++.+.+.|+..|++.+..+ ++ .++.+.++.|+++|+.|.+-
T Consensus 86 ~~l~~a~~~gv~~iri~~~~~---------~~---~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 86 DLLEPASGSVVDMIRVAFHKH---------EF---DEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHHHHHhcCCcCEEEEecccc---------cH---HHHHHHHHHHHHCCCeEEEE
Confidence 456677788888888876554 22 23677888888999887765
No 194
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=33.66 E-value=29 Score=34.83 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=50.4
Q ss_pred eEEEEEEecCC-CCCHhHHHHHHHHHHHcCCCEEEEeccCCCCC--------CCCC----eeeecchhhHHHHHHHHHHc
Q 006845 9 FRIIGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLHE--------PKPG----KLVFSGIADLVSFLKLCQKL 75 (629)
Q Consensus 9 ~~~~sg~~Hy~-r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE--------p~~G----~~df~~~~Dl~~fl~~a~~~ 75 (629)
+.+.-|.-+.. |||.+.|.+.++++++.| ..+.+.|.-.| -.++ ..++.+..+|..++.+.+..
T Consensus 108 i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a 184 (247)
T PF01075_consen 108 IGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRA 184 (247)
T ss_dssp EEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTS
T ss_pred EEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcC
Confidence 34444444544 599999999999999998 55667787666 1233 68888888999999999999
Q ss_pred CceEEecCCC
Q 006845 76 DLLVMLRPGP 85 (629)
Q Consensus 76 GL~VilrpGP 85 (629)
.+.|-...||
T Consensus 185 ~~~I~~Dtg~ 194 (247)
T PF01075_consen 185 DLVIGNDTGP 194 (247)
T ss_dssp SEEEEESSHH
T ss_pred CEEEecCChH
Confidence 9988888776
No 195
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=33.62 E-value=2.5e+02 Score=27.50 Aligned_cols=117 Identities=17% Similarity=0.157 Sum_probs=65.6
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccCCCe
Q 006845 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPAL 107 (629)
Q Consensus 28 ~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~ 107 (629)
.+++.+|+.|+..|-+=. .+|.-.. +..+..-++-|+++||.+ |-|..+- +..
T Consensus 13 i~w~~vk~~g~~fv~ika-------teg~~~~--D~~f~~n~~~A~~aGl~~----G~Yhf~~--------------~~~ 65 (196)
T cd06416 13 STFQCLKNNGYSFAIIRA-------YRSNGSF--DPNSVTNIKNARAAGLST----DVYFFPC--------------INC 65 (196)
T ss_pred hhhhHHHhCCceEEEEEE-------EccCCcc--ChHHHHHHHHHHHcCCcc----ceEEEec--------------CCC
Confidence 556789999988655421 1221111 234788899999999765 6554321 100
Q ss_pred eecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCCCC----cHHHHHHHHHHHHHhcCCceEEEEecC
Q 006845 108 KLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD----DKEYLHHLVTLARAHLGKDIILYTTDG 183 (629)
Q Consensus 108 ~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~----~~~y~~~l~~~~~~~~G~~v~l~t~dg 183 (629)
..++ .++++.+++.+ +.. ....+.|++.||-.-+.+.. -.++++.+.+.++++ |..+.+||+-.
T Consensus 66 ---~~~~--~~Qa~~f~~~~----~~~--~~~~~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~-G~~~~iYt~~~ 133 (196)
T cd06416 66 ---CGSA--AGQVQTFLQYL----KAN--GIKYGTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKAL-GLKVGIYSSQY 133 (196)
T ss_pred ---CCCH--HHHHHHHHHHH----HhC--CCceeEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHh-CCeEEEEcCcc
Confidence 1222 25556655554 221 11234456788854233332 234666666777775 99999998754
No 196
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=33.18 E-value=97 Score=25.52 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.3
Q ss_pred ccccEEEEEECCCCCCCCCCCeEEEEEeccc
Q 006845 406 KVHDRAQVFISCPTEDNSGRPTYVGTIERWS 436 (629)
Q Consensus 406 ~~~D~a~V~vng~~~~~~~~~~~vG~l~~~~ 436 (629)
...|.|-||+++ +|+|+++++.
T Consensus 25 k~~dsaEV~~g~---------EfiGvi~~De 46 (63)
T PF11324_consen 25 KKDDSAEVYIGD---------EFIGVIYRDE 46 (63)
T ss_pred CCCCceEEEeCC---------EEEEEEEeec
Confidence 568999999999 9999999854
No 197
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=33.17 E-value=5.5e+02 Score=28.83 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=57.8
Q ss_pred eCCEeeEEEEEEecCCCCC---HhHHHHHHHHHHHcCCCE--E--EEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcC
Q 006845 4 KDGEPFRIIGGDLHYFRIL---PQHWEDRLLRAKALGLNT--I--QTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD 76 (629)
Q Consensus 4 ~dG~~~~~~sg~~Hy~r~p---~~~W~~~l~k~ka~G~Nt--V--~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~G 76 (629)
+.+.-|+|+.+.-+-++.+ ++.-+.-.+.+++.|++. | .....-|+-.|.+..+.++- .-+.+-|+.|.+.|
T Consensus 153 ~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekSv-~~~~~eL~rA~~LG 231 (413)
T PTZ00372 153 IAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKSY-DAFLDDLQRCEQLG 231 (413)
T ss_pred cCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHHH-HHHHHHHHHHHHcC
Confidence 4567888888877766543 556666677888888862 3 33233788888888888873 23788899999999
Q ss_pred ce-EEecCCC
Q 006845 77 LL-VMLRPGP 85 (629)
Q Consensus 77 L~-VilrpGP 85 (629)
.. |++.||-
T Consensus 232 a~~VV~HPGs 241 (413)
T PTZ00372 232 IKLYNFHPGS 241 (413)
T ss_pred CCEEEECCCc
Confidence 95 7778873
No 198
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=32.91 E-value=75 Score=35.66 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=58.1
Q ss_pred EecCCCC--CHhHHHHHHHHHHHcCCCEEEE-eccCCCC--CC--CCCeeeec----------chhhHHHHHHHHH-HcC
Q 006845 15 DLHYFRI--LPQHWEDRLLRAKALGLNTIQT-YVPWNLH--EP--KPGKLVFS----------GIADLVSFLKLCQ-KLD 76 (629)
Q Consensus 15 ~~Hy~r~--p~~~W~~~l~k~ka~G~NtV~~-yv~Wn~h--Ep--~~G~~df~----------~~~Dl~~fl~~a~-~~G 76 (629)
+-+.+++ |-+.|++.|+.++++|+|+|.. ++----. .| -..+..|+ ...|+.+++..++ ++|
T Consensus 11 QTvlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ 90 (423)
T PF14701_consen 11 QTVLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYG 90 (423)
T ss_pred EEEhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcC
Confidence 3344443 4679999999999999999985 2221100 01 01122221 1248999999985 799
Q ss_pred ceEEecCCCcccccccC-CCCcccccccCCCeeecCCCHHHHHHH
Q 006845 77 LLVMLRPGPYICAEWDL-GGFPAWLLAKKPALKLRSSDRAYLQLV 120 (629)
Q Consensus 77 L~VilrpGPyi~aEw~~-GG~P~Wl~~~~p~~~~R~~~~~y~~~~ 120 (629)
|.++... + |+- .-==.||.. +|+.-.-..+.++|+.+
T Consensus 91 ll~~~Dv---V---~NHtA~nS~Wl~e-HPEagYN~~nsPHL~pA 128 (423)
T PF14701_consen 91 LLSMTDV---V---LNHTANNSPWLRE-HPEAGYNLENSPHLRPA 128 (423)
T ss_pred ceEEEEE---e---eccCcCCChHHHh-CcccccCCCCCcchhhH
Confidence 9876652 1 211 112458887 89875544444555443
No 199
>PRK06703 flavodoxin; Provisional
Probab=32.21 E-value=2.7e+02 Score=25.92 Aligned_cols=96 Identities=13% Similarity=-0.059 Sum_probs=56.2
Q ss_pred eeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeec---chhhHHHHHHHHHHcCceEEecCC
Q 006845 8 PFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS---GIADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 8 ~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~---~~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
..++++...+-.--+|+.+.+-+..+++.-++...+.++-. ++++ ...-.+.+-+..++.|..++.+|
T Consensus 50 d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~--------g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~- 120 (151)
T PRK06703 50 DGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGS--------GDTAYPLFCEAVTIFEERLVERGAELVQEG- 120 (151)
T ss_pred CcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEcc--------CCCChHHHHHHHHHHHHHHHHCCCEEcccC-
Confidence 45566554443344466677778878766666555545521 1211 11234567777788998887763
Q ss_pred CcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhc
Q 006845 85 PYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (629)
Q Consensus 85 Pyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 132 (629)
.. +....++...+++++.|.++|++.++
T Consensus 121 -~~-------------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 -LK-------------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred -eE-------------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 11122235678888888888877655
No 200
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=32.17 E-value=80 Score=33.66 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=47.3
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeccCC-------CC-C--CCCCeeeecchhhHHHHHHHHHHcCceEEecCCC
Q 006845 20 RILPQHWEDRLLRAKALGLNTIQTYVPWN-------LH-E--PKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (629)
Q Consensus 20 r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn-------~h-E--p~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGP 85 (629)
|||.|.|.+.++++.+-|+..|-++-+-. .. + +.+...|+.|..+|.+++.+.+...+.|=...||
T Consensus 196 ~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSGp 271 (344)
T TIGR02201 196 CWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSVP 271 (344)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCHH
Confidence 59999999999999887877665532210 00 0 2334678888888888888888888877777665
No 201
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=32.15 E-value=4.9e+02 Score=26.72 Aligned_cols=102 Identities=24% Similarity=0.262 Sum_probs=55.6
Q ss_pred HhHHHHHHHHHHHcCCCEEEEecc--CCCCCCCCCeeeecchhhHHHHHHHHHHcCceEE-ecCCCcccccccCCCCccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVP--WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM-LRPGPYICAEWDLGGFPAW 99 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~--Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vi-lrpGPyi~aEw~~GG~P~W 99 (629)
++.-++..+.+++.|...+.+-.+ =++..+.+.+.+-+ ...+.+.+++|++.|...| +.+|.+
T Consensus 44 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~-~~~~~~~i~~A~~lG~~~v~~~~g~~------------- 109 (279)
T cd00019 44 KERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKS-IERLKDEIERCEELGIRLLVFHPGSY------------- 109 (279)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHH-HHHHHHHHHHHHHcCCCEEEECCCCC-------------
Confidence 456666666666663333433211 13333433333222 2358999999999999744 444421
Q ss_pred ccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCC
Q 006845 100 LLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (629)
Q Consensus 100 l~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~ 154 (629)
+. ...+..++.+.+-++++++..+++ | |-+-|||.++..
T Consensus 110 -----~~----~~~~~~~~~~~~~l~~l~~~a~~~-----g--i~l~lEn~~~~~ 148 (279)
T cd00019 110 -----LG----QSKEEGLKRVIEALNELIDKAETK-----G--VVIALETMAGQG 148 (279)
T ss_pred -----CC----CCHHHHHHHHHHHHHHHHHhccCC-----C--CEEEEeCCCCCC
Confidence 10 122344455555566666665553 2 457889988764
No 202
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=32.13 E-value=4e+02 Score=28.37 Aligned_cols=115 Identities=19% Similarity=0.179 Sum_probs=80.5
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLA 102 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~ 102 (629)
-+..+.+|+.+|.-+. +||+|- =|- .-|+.++.+|.+.|++|+|.. |+..
T Consensus 62 a~~~~sDLe~l~~~t~-~IR~Y~-----------sDC---n~le~v~pAa~~~g~kv~lGi---------------w~td 111 (305)
T COG5309 62 ADQVASDLELLASYTH-SIRTYG-----------SDC---NTLENVLPAAEASGFKVFLGI---------------WPTD 111 (305)
T ss_pred HHHHHhHHHHhccCCc-eEEEee-----------ccc---hhhhhhHHHHHhcCceEEEEE---------------eecc
Confidence 6788999999998887 999983 112 237899999999999999983 4443
Q ss_pred cCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCC--CC---CcHHHHHHHHHHHHHhcCCceE
Q 006845 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS--YG---DDKEYLHHLVTLARAHLGKDII 177 (629)
Q Consensus 103 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~--~~---~~~~y~~~l~~~~~~~~G~~v~ 177 (629)
++ . ..+++ .++..+.+. ..-..|..+-|.||.=. .. .-.+|+...|.+.++ +|.++|
T Consensus 112 ---d~-------~--~~~~~---til~ay~~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~-agy~gp 173 (305)
T COG5309 112 ---DI-------H--DAVEK---TILSAYLPY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKE-AGYDGP 173 (305)
T ss_pred ---ch-------h--hhHHH---HHHHHHhcc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHh-cCCCCc
Confidence 11 1 12221 233333332 22368899999999732 11 246899999999997 899999
Q ss_pred EEEecCCC
Q 006845 178 LYTTDGGT 185 (629)
Q Consensus 178 l~t~dg~~ 185 (629)
+.|.|.+.
T Consensus 174 V~T~dsw~ 181 (305)
T COG5309 174 VTTVDSWN 181 (305)
T ss_pred eeecccce
Confidence 99999864
No 203
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=32.12 E-value=99 Score=33.18 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=43.6
Q ss_pred EEecCC-CCCHhHHHHHHHHHHHcCCCEEEEeccCCCCC-------------CCCCeeeecchhhHHHHHHHHHHcCceE
Q 006845 14 GDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLHE-------------PKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (629)
Q Consensus 14 g~~Hy~-r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE-------------p~~G~~df~~~~Dl~~fl~~a~~~GL~V 79 (629)
|+-+.. |||.|.|.+.++.+++.|+..|- .+.-.| ..+...|..|..+|.++..+.+...+.|
T Consensus 191 ga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl---~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v 267 (352)
T PRK10422 191 TARQIFKCWDNDKFSAVIDALQARGYEVVL---TSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFI 267 (352)
T ss_pred CCCccccCCCHHHHHHHHHHHHHCCCeEEE---EcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEE
Confidence 443333 59999999999999888876553 343322 1123456666666777777666666666
Q ss_pred EecCCC
Q 006845 80 MLRPGP 85 (629)
Q Consensus 80 ilrpGP 85 (629)
=-..||
T Consensus 268 ~nDSGp 273 (352)
T PRK10422 268 GVDSAP 273 (352)
T ss_pred ecCCHH
Confidence 555554
No 204
>PTZ00333 triosephosphate isomerase; Provisional
Probab=31.94 E-value=90 Score=32.61 Aligned_cols=49 Identities=20% Similarity=0.051 Sum_probs=39.0
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCC
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
-+++|++|++.|-+ -|.-++-.|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL-----GHSERRQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 35899999999999 565555556444 45688899999999999999966
No 205
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=31.83 E-value=1.2e+02 Score=31.70 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=50.1
Q ss_pred CCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHH-HcCceEEecCC
Q 006845 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQ-KLDLLVMLRPG 84 (629)
Q Consensus 19 ~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~-~~GL~VilrpG 84 (629)
.+...+.-.+..+.+-++|+..|++.++-...+...|..-|.....+.++.++.+ +.-|-+++|++
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 4677889999999999999999999988876666677777776555666666553 45566777765
No 206
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=31.82 E-value=1.4e+02 Score=31.02 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=58.9
Q ss_pred ecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcC--ceEEecCCCccc-----
Q 006845 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD--LLVMLRPGPYIC----- 88 (629)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~G--L~VilrpGPyi~----- 88 (629)
.|+..-+.+.=-++|++=.++|.+.+-|-.+.+. . .+.+|++.|++.| +.||+..-|-..
T Consensus 139 ~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~fd~----------~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~ 205 (274)
T cd00537 139 GHPEAPSLEEDIKRLKRKVDAGADFIITQLFFDN----------D---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAK 205 (274)
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCCEEeecccccH----------H---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHH
Confidence 3443333333334455555669999999554332 2 3899999999998 456666555432
Q ss_pred --ccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhcc
Q 006845 89 --AEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (629)
Q Consensus 89 --aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 133 (629)
+++-.-.+|.|+.++... ...+....++.-.++..+++..+.+
T Consensus 206 ~~~~~~Gv~vP~~~~~~l~~--~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 206 RFAKLCGVEIPDWLLERLEK--LKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHhhCCCCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444689888863111 1122334455556666666666654
No 207
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=31.59 E-value=76 Score=33.90 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=44.0
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEecc----CCCCCC------CCCeee------ecchhhHHHHHHHHHHcCceEEec
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPGKLV------FSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp------~~G~~d------f~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.|.+..++.|+.|...++|++..++. |.+.-+ +.|.+. +=-..|+.++++.|++.||.||..
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeee
Confidence 46889999999999999999999875 443321 233332 222357999999999999999987
No 208
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=31.48 E-value=1.5e+02 Score=32.24 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=53.1
Q ss_pred eeCCEeeEEEEEEecCCCC-CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecc--hhhHHHHHHHHHHcCceE
Q 006845 3 RKDGEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLV 79 (629)
Q Consensus 3 ~~dG~~~~~~sg~~Hy~r~-p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~--~~Dl~~fl~~a~~~GL~V 79 (629)
.+.|.++.++.| +--+ .++.-.+.-+.+|++|.+.++.|++= |.---|.|.| ..-|.-+.+.|++.||.+
T Consensus 88 ~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v 160 (335)
T PRK08673 88 EIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGLPI 160 (335)
T ss_pred EECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCCcE
Confidence 345667777888 2222 27778888889999999999998884 4333356664 344677777789999999
Q ss_pred EecC
Q 006845 80 MLRP 83 (629)
Q Consensus 80 ilrp 83 (629)
+-.+
T Consensus 161 ~tev 164 (335)
T PRK08673 161 VTEV 164 (335)
T ss_pred EEee
Confidence 8874
No 209
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=31.32 E-value=1e+02 Score=33.69 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=54.8
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccCCCeee
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKL 109 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~ 109 (629)
++.+-++|..+|.+.|+|.. .+...-..|+.+..+.|++.||-||+.. |--+ +.+.-
T Consensus 152 VedAlrLGAdAV~~tvy~Gs------~~E~~ml~~l~~i~~ea~~~GlPlv~~~--YpRG---------------~~i~~ 208 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFGS------EESRRQIEEISEAFEEAHELGLATVLWS--YLRN---------------SAFKK 208 (348)
T ss_pred HHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCCEEEEe--cccC---------------cccCC
Confidence 67788999999999999982 2234455689999999999999988852 1111 11110
Q ss_pred --c-CCCHHHHHHHHHHHHHHHHhhcc
Q 006845 110 --R-SSDRAYLQLVERWWGVLLPKIAP 133 (629)
Q Consensus 110 --R-~~~~~y~~~~~~~~~~l~~~l~~ 133 (629)
. ..+|.++.++.|.-.+|...+-|
T Consensus 209 ~~d~~~~~d~Ia~AaRiaaELGADIVK 235 (348)
T PRK09250 209 DGDYHTAADLTGQANHLAATIGADIIK 235 (348)
T ss_pred cccccccHHHHHHHHHHHHHHcCCEEE
Confidence 1 23578888888866666444443
No 210
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=31.27 E-value=96 Score=36.39 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=45.0
Q ss_pred ecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEe
Q 006845 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (629)
Q Consensus 16 ~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vil 81 (629)
+-|.|.|.+.-+..++++++.|+..|+++.+.|.. .++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 44667788888999999999999999998766653 4689999999999998644
No 211
>PRK01060 endonuclease IV; Provisional
Probab=31.22 E-value=4.7e+02 Score=26.74 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=39.2
Q ss_pred CCHhHHHHHHHHHHHcCCCE--EEE--eccCCCCCCCCCeeeecchhhHHHHHHHHHHcCce-EEecCC
Q 006845 21 ILPQHWEDRLLRAKALGLNT--IQT--YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL-VMLRPG 84 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~Nt--V~~--yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~-VilrpG 84 (629)
+.++.-+..-+++++.|+.. |.. ....|+-.|.|.+.+.+ ...+.+.+++|++.|.. |++.||
T Consensus 44 ~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s-~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 44 LEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKS-RDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred CCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHH-HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44445454455677889873 222 22246666655544444 23589999999999996 556655
No 212
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=31.13 E-value=81 Score=32.59 Aligned_cols=55 Identities=16% Similarity=0.053 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCEEEEeccCCCCCCCCCe-ee--ec-chhhHHHHHHHHHHcCceEEecC
Q 006845 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK-LV--FS-GIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 25 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~-~d--f~-~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
++++.++.++++|+++|.+.- .+...+. .. +. ....+.++.++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAG----YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecC----cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 467888999999999997631 1111110 00 11 11357888999999999999983
No 213
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=31.09 E-value=5.7e+02 Score=27.09 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCCEEEEe---ccCCCCCCCCCeeeecc--hhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccc
Q 006845 28 DRLLRAKALGLNTIQTY---VPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLA 102 (629)
Q Consensus 28 ~~l~k~ka~G~NtV~~y---v~Wn~hEp~~G~~df~~--~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~ 102 (629)
+.|+-..+.|+..-|+- |||.-|+. -.|++.. .-.+.+.=++|+++||.+-+.||.|+-
T Consensus 49 ~~L~~n~~~~I~~yRisS~liP~ashp~--~~~~~~~~~~~~l~~iG~~~~~~~iRls~HP~qf~v-------------- 112 (275)
T PF03851_consen 49 RILEYNIAHGIRFYRISSDLIPLASHPE--VGWDWEEEFAEELAEIGDLAKENGIRLSMHPDQFTV-------------- 112 (275)
T ss_dssp HHHHHHHHTT--EEE--TTSSTTTTSTT----S-HHHHHHHHHHHHHHHHHHTT-EEEE---TT----------------
T ss_pred HHHHHHHHcCCCEEecCcccCCCCCCcc--cccchHHHHHHHHHHHHHHHHHcCCeEEecCCccee--------------
Confidence 34555577888887774 78999982 2244432 235677778889999999999998762
Q ss_pred cCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccC-CCceEEEeeccccCCCCCcHHHHHHHHHHHHH
Q 006845 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDI-GGPIVMVQIENEFGSYGDDKEYLHHLVTLARA 170 (629)
Q Consensus 103 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~-ggpII~~QvENEyg~~~~~~~y~~~l~~~~~~ 170 (629)
+-+.+|.-.++.-+-++.-...+.-.-... .+.+|-+.|.= .||+..+-++.+.+.++.
T Consensus 113 ------LnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG---~YgdK~~al~RF~~~~~~ 172 (275)
T PF03851_consen 113 ------LNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGG---VYGDKEAALERFIENFKR 172 (275)
T ss_dssp ------TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE-------SS-HHHHHHHHHHHHHT
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCC---CCCChHHHHHHHHHHHhh
Confidence 224445444444333333223332221111 13677788753 355555555555555544
No 214
>PRK14567 triosephosphate isomerase; Provisional
Probab=30.66 E-value=1e+02 Score=32.23 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=37.2
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCC
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
-.++|++|++.|-+ -|.-++-.|.-+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 35889999999998 455555555433 34577888899999999999966
No 215
>PRK14566 triosephosphate isomerase; Provisional
Probab=30.49 E-value=95 Score=32.60 Aligned_cols=49 Identities=16% Similarity=0.001 Sum_probs=37.3
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCC
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
-+++|++|++.|-+ -|.-++..|.-+ +..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII-----GHSERRRMYGET-SNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 35899999999998 455555555433 34577788999999999999965
No 216
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=30.49 E-value=28 Score=23.28 Aligned_cols=15 Identities=40% Similarity=1.331 Sum_probs=7.4
Q ss_pred cCCC------CCCCccccccCC
Q 006845 613 LCPC------SNPSSWGKSCGH 628 (629)
Q Consensus 613 ~~~~------~~~~~~~~~~~~ 628 (629)
-||| ++ |-||..|-|
T Consensus 3 CCPCamc~~~~g-C~WGQ~~~~ 23 (27)
T PF08098_consen 3 CCPCAMCKYTGG-CPWGQNCYP 23 (27)
T ss_dssp S--S----TTTT--SSS-SS-S
T ss_pred ccccccceeecC-Ccccccccc
Confidence 4777 45 999999865
No 217
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=29.88 E-value=89 Score=32.17 Aligned_cols=75 Identities=23% Similarity=0.200 Sum_probs=54.5
Q ss_pred EEEEecCCC-CCHhHHHHHHHHHHHcCCCEEEEeccCCCCC-----------CCCCeeeecchhhHHHHHHHHHHcCceE
Q 006845 12 IGGDLHYFR-ILPQHWEDRLLRAKALGLNTIQTYVPWNLHE-----------PKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (629)
Q Consensus 12 ~sg~~Hy~r-~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE-----------p~~G~~df~~~~Dl~~fl~~a~~~GL~V 79 (629)
..|+-+..| ||.+.|.+.++++++.|++.|-+.-+ .| +.+...++.+..++.+++.+.++..+.|
T Consensus 127 ~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~---~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I 203 (279)
T cd03789 127 PPGASGPAKRWPAERFAALADRLLARGARVVLTGGP---AERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVV 203 (279)
T ss_pred CCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEech---hhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEE
Confidence 334444444 89999999999999888887755322 21 1345678888888999999999999988
Q ss_pred EecCCCcccc
Q 006845 80 MLRPGPYICA 89 (629)
Q Consensus 80 ilrpGPyi~a 89 (629)
-...||.--|
T Consensus 204 ~~Dsg~~HlA 213 (279)
T cd03789 204 TNDSGPMHLA 213 (279)
T ss_pred eeCCHHHHHH
Confidence 8887774443
No 218
>PLN02429 triosephosphate isomerase
Probab=29.61 E-value=85 Score=33.86 Aligned_cols=49 Identities=14% Similarity=-0.018 Sum_probs=32.3
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCC
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
.+++|++|++.|-+ -|.-++-.|.-+. ..+.+=+..|.++||.+|++.|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~f~Etd-~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHVIGEKD-EFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCCCCcCH-HHHHHHHHHHHHCcCEEEEEcC
Confidence 45889999999988 4544444443221 2233333449999999999976
No 219
>PRK10426 alpha-glucosidase; Provisional
Probab=29.13 E-value=1.2e+02 Score=35.82 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=48.4
Q ss_pred HhHHHHHHHHHHHcCCCEEEEec-cCCCCCCC----CCeeeecch----hhHHHHHHHHHHcCceEEecCCCcccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYV-PWNLHEPK----PGKLVFSGI----ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv-~Wn~hEp~----~G~~df~~~----~Dl~~fl~~a~~~GL~VilrpGPyi~a 89 (629)
.+.-++.++++|+.|+.+=.+++ .|...... ..-+||+++ -|.+++++..++.|++|++..=||++.
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~ 295 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLAS 295 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCC
Confidence 45678899999999988666655 46532221 122345443 388999999999999999998888864
No 220
>PRK06852 aldolase; Validated
Probab=29.11 E-value=1.1e+02 Score=32.95 Aligned_cols=81 Identities=9% Similarity=0.030 Sum_probs=54.1
Q ss_pred HHHHHHcC------CCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCccccccc
Q 006845 30 LLRAKALG------LNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAK 103 (629)
Q Consensus 30 l~k~ka~G------~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~ 103 (629)
++.+-++| ..+|.+.++|. +.+...-..|+.+..+.|++.||-+|+.. |--
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~G------s~~E~~ml~~l~~v~~ea~~~GlPll~~~--ypr--------------- 177 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLG------SEYESEMLSEAAQIIYEAHKHGLIAVLWI--YPR--------------- 177 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecC------CHHHHHHHHHHHHHHHHHHHhCCcEEEEe--ecc---------------
Confidence 45566666 66999999998 22334556789999999999999988741 110
Q ss_pred CCCeeecCCCHHHHHHHHHHHHHHHHhhccc
Q 006845 104 KPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (629)
Q Consensus 104 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (629)
-+.+ -...+|.++.++.|--.+|..-+-|-
T Consensus 178 G~~i-~~~~~~~~ia~aaRiaaELGADIVKv 207 (304)
T PRK06852 178 GKAV-KDEKDPHLIAGAAGVAACLGADFVKV 207 (304)
T ss_pred Cccc-CCCccHHHHHHHHHHHHHHcCCEEEe
Confidence 0112 23457888888887666665555443
No 221
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=28.96 E-value=38 Score=35.47 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=42.5
Q ss_pred HHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecC
Q 006845 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 29 ~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
.-+.+|+.|-++|-+-|.|..-|++-.+=.-.. +++|...|+.++|..+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~neqk~a~---ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEINEQKLAY---IERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHHhHHHHHH---HHHHHHHhhhcCCceeEee
Confidence 356899999999999999999998433333333 8899999999999999885
No 222
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=28.45 E-value=1.7e+02 Score=29.62 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=62.7
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeec-chhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccc
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~-~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl 100 (629)
.+..++..++.++++|+..+-+|..... ....|..+ |..|-...+++|++.|+ -+| -|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~g-----------s~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPG-----------TIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCC-----------CEEEE
Confidence 4778899999999999999999987765 23333333 67899999999999994 222 33333
Q ss_pred cccCCCeeecCCCHHHHHHHHHHHHHHHHhhccc
Q 006845 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (629)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (629)
.-+ .+ ..+..+.+.+..||+.+...|...
T Consensus 112 avD-~d----~~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVD-FD----ALDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred Eee-cC----CCcchhHHHHHHHHHHHHHHHHhc
Confidence 321 11 123347788888888888888753
No 223
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=28.44 E-value=1.1e+02 Score=33.06 Aligned_cols=56 Identities=25% Similarity=0.425 Sum_probs=42.8
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCce--EEecCCCccccc
Q 006845 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL--VMLRPGPYICAE 90 (629)
Q Consensus 22 p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~--VilrpGPyi~aE 90 (629)
....|+.--.-.+++||-||++|-+|+.-+.. .|++.||.-.+.+=-+ +||. .||-
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---------~d~e~~Lsdl~~APe~si~iLh----aCAh 188 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKC---------VDLEGFLSDLESAPEGSIIILH----ACAH 188 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCce---------ecHHHHHHHHhhCCCCcEEeee----cccc
Confidence 35579999999999999999999999987654 5677788777766444 4444 6764
No 224
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=28.16 E-value=88 Score=32.33 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=33.1
Q ss_pred eeCCEeeEEEEEEecCCC-CCHhHHHHHHHHHHHcCCCEEEE
Q 006845 3 RKDGEPFRIIGGDLHYFR-ILPQHWEDRLLRAKALGLNTIQT 43 (629)
Q Consensus 3 ~~dG~~~~~~sg~~Hy~r-~p~~~W~~~l~k~ka~G~NtV~~ 43 (629)
.+.|+++..+.|.+|+.. ....+-+--++.||++|+..|-.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 478999999999999654 44556678899999999997654
No 225
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=27.87 E-value=1.9e+02 Score=31.09 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccc
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLA 102 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~ 102 (629)
-..|+.+|++|.+||= |..|- .-.||...+.+++++-|+.||...|=|.-.. .|.|+..
T Consensus 41 ~~El~~~k~~Gg~tiV--------d~T~~----g~GRd~~~l~~is~~tGv~II~~TG~y~~~~-----~p~~~~~ 99 (308)
T PF02126_consen 41 VAELKEFKAAGGRTIV--------DATPI----GLGRDVEALREISRRTGVNIIASTGFYKEPF-----YPEWVRE 99 (308)
T ss_dssp HHHHHHHHHTTEEEEE--------E--SG----GGTB-HHHHHHHHHHHT-EEEEEEEE-SGGC-----SCHHHHT
T ss_pred HHHHHHHHHcCCCEEE--------ecCCc----ccCcCHHHHHHHHHHhCCeEEEeCCCCcccc-----CChhhhc
Confidence 3478999999998853 22211 2247999999999999999999988666332 5777764
No 226
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=27.73 E-value=3e+02 Score=25.05 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=45.7
Q ss_pred CCEeeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecC
Q 006845 5 DGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (629)
Q Consensus 5 dG~~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilrp 83 (629)
.|.-+++.+|.. ...-.++.+.+-++.+.+.|+-.+-+.+-=...+- =+.++++|.+++|-+|.-|
T Consensus 41 ~~gElvlttg~~-~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~i------------P~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 41 RGGELVLTTGYA-LRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEI------------PEEIIELADELGLPLIEIP 106 (123)
T ss_pred CCCeEEEECCcc-cCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccC------------CHHHHHHHHHcCCCEEEeC
Confidence 444455555532 22335678999999999999999888543222221 1699999999999999886
No 227
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=27.20 E-value=3e+02 Score=27.79 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=72.6
Q ss_pred HhHHHHHHHHHHHcCCCE-EEE--eccCCCCC---CCCCeeee--cc-------------hhhHHHHHHHHHHcCceEEe
Q 006845 23 PQHWEDRLLRAKALGLNT-IQT--YVPWNLHE---PKPGKLVF--SG-------------IADLVSFLKLCQKLDLLVML 81 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~Nt-V~~--yv~Wn~hE---p~~G~~df--~~-------------~~Dl~~fl~~a~~~GL~Vil 81 (629)
++.-.+.++++|+.|+.+ |.| |++|...+ |.=..+.+ -. ...+-+.|+.+.+.|..|.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 566788999999999974 444 55553222 12222322 21 11344556777788888888
Q ss_pred cCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeecc-----------c
Q 006845 82 RPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN-----------E 150 (629)
Q Consensus 82 rpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvEN-----------E 150 (629)
|. | -.|++ ++++.-++++.+|++.+. +. +|-...--+ +
T Consensus 133 R~-~-----------------vIPg~---nd~~e~i~~ia~~l~~l~--~~--------~~~llpyh~~g~~Ky~~lg~~ 181 (213)
T PRK10076 133 RL-P-----------------LIPGF---TLSRENMQQALDVLIPLG--IK--------QIHLLPFHQYGEPKYRLLGKT 181 (213)
T ss_pred EE-E-----------------EECCC---CCCHHHHHHHHHHHHHcC--Cc--------eEEEecCCccchhHHHHcCCc
Confidence 82 0 13554 567888888888877651 11 121111111 2
Q ss_pred cCC--C-CCcHHHHHHHHHHHHHhcCCceEE
Q 006845 151 FGS--Y-GDDKEYLHHLVTLARAHLGKDIIL 178 (629)
Q Consensus 151 yg~--~-~~~~~y~~~l~~~~~~~~G~~v~l 178 (629)
|-. . ..+.+.|+.+++.+++ .|+.+.+
T Consensus 182 y~~~~~~~~~~~~l~~~~~~~~~-~gl~~~i 211 (213)
T PRK10076 182 WSMKEVPAPSSADVATMREMAER-AGFQVTV 211 (213)
T ss_pred CccCCCCCcCHHHHHHHHHHHHH-cCCeEEe
Confidence 221 1 2578899999999998 5887653
No 228
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=26.84 E-value=2.5e+02 Score=28.70 Aligned_cols=92 Identities=12% Similarity=0.085 Sum_probs=52.1
Q ss_pred CCCeeeec-chhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhh
Q 006845 53 KPGKLVFS-GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKI 131 (629)
Q Consensus 53 ~~G~~df~-~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l 131 (629)
..|...+. ...++..+++.|++.|++|++..| + |..+.+ . .+ ..++.- -+++++.++..+
T Consensus 35 ~~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sig----g-~~~~~~---~-----~~---~~~~~~---r~~fi~~lv~~~ 95 (253)
T cd06545 35 ANGTLNANPVRSELNSVVNAAHAHNVKILISLA----G-GSPPEF---T-----AA---LNDPAK---RKALVDKIINYV 95 (253)
T ss_pred CCCeEEecCcHHHHHHHHHHHHhCCCEEEEEEc----C-CCCCcc---h-----hh---hcCHHH---HHHHHHHHHHHH
Confidence 35677664 335788999999999999999954 1 221111 0 11 123433 346677777777
Q ss_pred ccccccCCCceEEEeeccccCCCCCcHHH---HHHHHHHHHH
Q 006845 132 APLLYDIGGPIVMVQIENEFGSYGDDKEY---LHHLVTLARA 170 (629)
Q Consensus 132 ~~~~~~~ggpII~~QvENEyg~~~~~~~y---~~~l~~~~~~ 170 (629)
+++.+ =++.|+=|+.... ...| ++.|++.+++
T Consensus 96 ~~~~~------DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 96 VSYNL------DGIDVDLEGPDVT-FGDYLVFIRALYAALKK 130 (253)
T ss_pred HHhCC------CceeEEeeccCcc-HhHHHHHHHHHHHHHhh
Confidence 76532 2456666664321 2344 4444444443
No 229
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=26.74 E-value=76 Score=33.07 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=43.7
Q ss_pred EEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 11 IIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 11 ~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.-+|.|.|..-.-+...++++.+|++|++-|-+.+- ...|..|.+- +.++++.|+ ++.|.+.
T Consensus 60 PR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L-----~~dg~vD~~~---~~~Li~~a~--~~~vTFH 121 (248)
T PRK11572 60 PRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVL-----DVDGHVDMPR---MRKIMAAAG--PLAVTFH 121 (248)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeE-----CCCCCcCHHH---HHHHHHHhc--CCceEEe
Confidence 446888898888888999999999999998887543 1345555554 566666663 5555543
No 230
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=25.58 E-value=1.3e+02 Score=31.36 Aligned_cols=49 Identities=16% Similarity=0.069 Sum_probs=35.6
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCC
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
..++|++|++.|-+ -|.-++-.|+-+. ..+.+=++.|.++||.+|++.|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~~~E~d-~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI-----GHSERRLYFGETD-ELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE-----Cccccccccccch-HHHHHHHHHHHHCCCeEEEEcC
Confidence 45889999999998 3443333333332 3467888999999999999955
No 231
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=25.48 E-value=9.6e+02 Score=26.65 Aligned_cols=111 Identities=16% Similarity=0.194 Sum_probs=63.9
Q ss_pred HcCCCEEEEecc----CCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccC---CC-
Q 006845 35 ALGLNTIQTYVP----WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKK---PA- 106 (629)
Q Consensus 35 a~G~NtV~~yv~----Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~---p~- 106 (629)
.+||..+|+.|- |.- |.+|-.- +--.+-+-+-..|+.|..-| | -.|+|++... .+
T Consensus 77 ~lg~si~Rv~I~~ndfsl~-----g~~d~w~--kels~Ak~~in~g~ivfASP-------W---spPa~Mktt~~~ngg~ 139 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG-----GSADNWY--KELSTAKSAINPGMIVFASP-------W---SPPASMKTTNNRNGGN 139 (433)
T ss_pred ccCceEEEEEecccccccC-----CCcchhh--hhcccchhhcCCCcEEEecC-------C---CCchhhhhccCcCCcc
Confidence 478889999774 444 2222110 01112222556789888886 4 4799998631 11
Q ss_pred -eeec-CCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCC---CC----CcHHHHHHHHHHHHH
Q 006845 107 -LKLR-SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS---YG----DDKEYLHHLVTLARA 170 (629)
Q Consensus 107 -~~~R-~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~---~~----~~~~y~~~l~~~~~~ 170 (629)
-++| ...++|-++..+|+.++ + .+|=|+-++-|.||... |. ...+..+.+++-++.
T Consensus 140 ~g~Lk~e~Ya~yA~~l~~fv~~m----~----~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~s 204 (433)
T COG5520 140 AGRLKYEKYADYADYLNDFVLEM----K----NNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLAS 204 (433)
T ss_pred ccccchhHhHHHHHHHHHHHHHH----H----hCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhhhh
Confidence 2343 33555655555554443 3 45889999999999863 21 345556666665554
No 232
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=25.06 E-value=1.6e+02 Score=28.98 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=33.3
Q ss_pred HHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 29 ~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.+++++++|.+.|.+..... ..++.++++.|+++|+.+++-
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 68899999999999864431 134789999999999999875
No 233
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.88 E-value=29 Score=34.31 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=43.2
Q ss_pred EEEEEEecCCCCC---HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 10 RIIGGDLHYFRIL---PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 10 ~~~sg~~Hy~r~p---~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
..-+|--.|.|+- |-..+ +-+.++|+..+-+-- ..---.--|||-..-+|.+|.++|+++||.+-|-
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDT---aiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDT---AIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EEeccccchhhccCcCccccH---HHHHhcCCCEEEEec---ccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 4445555566642 33333 356778988655421 1122233578877789999999999999998765
No 234
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=24.70 E-value=59 Score=35.14 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCC------CCCCCeeeecchhhHHHHHHHHHHcCceE
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNLH------EPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~h------Ep~~G~~df~~~~Dl~~fl~~a~~~GL~V 79 (629)
++.|++||++|++.+.. ...... .-.|++..+. +..+.++.|++.||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 67899999999998741 011111 1123333332 3578999999999965
No 235
>COG2360 Aat Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.53 E-value=92 Score=31.66 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=61.1
Q ss_pred CeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCC-----------CcccccccC---------------CCee
Q 006845 55 GKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG-----------FPAWLLAKK---------------PALK 108 (629)
Q Consensus 55 G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG-----------~P~Wl~~~~---------------p~~~ 108 (629)
+.|..+-+.++++.|+.|+..-=. |+|.+|..|-.... +=.|.-+.- ..|-
T Consensus 75 ~~~~v~~n~aF~~Vi~~CA~~~~~---r~~TWI~~~~~~aY~~Lh~~G~AHSvE~W~gdeLvGGlYGvalG~~F~GESMF 151 (221)
T COG2360 75 SPYRVRVNYAFAAVIEGCAATRPP---RDGTWINDEIREAYHKLHEMGHAHSVEVWQGDELVGGLYGVALGRAFFGESMF 151 (221)
T ss_pred CCeEEEechhHHHHHHHHhccCCC---CCCcccCHHHHHHHHHHHHhccceeEEEeeCCeeehhhhhhhhcceeechhhh
Confidence 445555567788888888864222 77777776643321 223433210 0011
Q ss_pred ecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeecccc----CCCC-CcHHHHHHHHH
Q 006845 109 LRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEF----GSYG-DDKEYLHHLVT 166 (629)
Q Consensus 109 ~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEy----g~~~-~~~~y~~~l~~ 166 (629)
-|.. ++.+-.+-.++++++.+ |+.+|=.|+.||. |.+. .+++|.+.|++
T Consensus 152 sr~~-----nASKialv~lv~~L~~~----g~~LiD~Q~~n~HL~~~GA~~ipr~~y~~~L~~ 205 (221)
T COG2360 152 SRAT-----NASKIALVHLVEHLRRH----GFVLIDCQVLNEHLASLGAYEIPRKEYLNYLRR 205 (221)
T ss_pred hcCC-----CchHHHHHHHHHHHHhc----CceEEeeecCCHHHHhcCCeecCHHHHHHHHHH
Confidence 1222 23444455566666654 8899999999995 5555 78999999998
No 236
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=24.36 E-value=6.3e+02 Score=24.17 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=61.7
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccCCCeee
Q 006845 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKL 109 (629)
Q Consensus 30 l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~ 109 (629)
++++|+.|+..|-+=+ .+|....+- .+..-++.|+++||.| |-|.++. +
T Consensus 12 w~~~k~~gi~fviika-------teG~~~~D~--~~~~n~~~a~~aGl~~----G~Yhf~~--------------~---- 60 (181)
T PF01183_consen 12 WQKVKAAGIDFVIIKA-------TEGTSYVDP--YFESNIKNAKAAGLPV----GAYHFAR--------------A---- 60 (181)
T ss_dssp HHHHHHTTEEEEEEEE-------EETTTEE-T--THHHHHHHHHHTTSEE----EEEEE----------------T----
T ss_pred HHHHHHCCCCEEEEEe-------eeCCCeecc--hHHHHHHHHHHcCCeE----EEEEEec--------------c----
Confidence 5688999987665422 345533332 3789999999999875 4444321 1
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccc--cCC-CCCcHHHHHHHHHHHHHhcCCceEEEEecC
Q 006845 110 RSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENE--FGS-YGDDKEYLHHLVTLARAHLGKDIILYTTDG 183 (629)
Q Consensus 110 R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENE--yg~-~~~~~~y~~~l~~~~~~~~G~~v~l~t~dg 183 (629)
.+.+.+ .++++-+++.+ ++. ..+.-.+++-||.. -+. -....+.++.+.+.++++.|..+.||++..
T Consensus 61 ~~~~~a-~~qA~~f~~~~----~~~--~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~iY~~~~ 130 (181)
T PF01183_consen 61 TNSSDA-EAQADYFLNQV----KGG--DPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEKAAGYKPGIYTSKS 130 (181)
T ss_dssp TTHCHH-HHHHHHHHHCT----HTS--STSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHHHCTSEEEEEEEHH
T ss_pred CCcccH-HHHHHHHHHHh----ccc--CCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHHHhCCceeEeecHH
Confidence 011121 33444433333 211 12223368888855 111 113345666666666565799999998754
No 237
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=24.07 E-value=1.2e+02 Score=35.17 Aligned_cols=63 Identities=17% Similarity=0.101 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCee---------eecchhhHHHHHHHHHHcCceEEecCCCcccc
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKL---------VFSGIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~---------df~~~~Dl~~fl~~a~~~GL~VilrpGPyi~a 89 (629)
.+.|+.+|++|+++|-+-=+=-..++.-|-+ .|.-..|+.++|+.+++.||++|+..-|=-++
T Consensus 43 ~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~ 114 (545)
T KOG0471|consen 43 TSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRS 114 (545)
T ss_pred hhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCC
Confidence 5678999999999998754434444433332 24445699999999999999999996654444
No 238
>PLN02389 biotin synthase
Probab=23.80 E-value=96 Score=34.26 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEecc--CCCCCCCCCeeeecchhhHHHHHHHHHHcCceE
Q 006845 27 EDRLLRAKALGLNTIQTYVP--WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~--Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~V 79 (629)
++.++++|++|++.+..-+- -+.+...-..-+|+. .-+.++.|++.||.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~---rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDD---RLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHH---HHHHHHHHHHcCCeE
No 239
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=23.78 E-value=47 Score=35.59 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=39.7
Q ss_pred eeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEe
Q 006845 8 PFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (629)
Q Consensus 8 ~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vil 81 (629)
..++++-+..--++ ++.|++.+..+-++|+|.|+- +|+. ..|..+|.++|+++|..++=
T Consensus 34 ~~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsG-----LH~~---------L~ddpel~~~A~~~g~~i~D 92 (301)
T PF07755_consen 34 DTLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSG-----LHDF---------LSDDPELAAAAKKNGVRIID 92 (301)
T ss_dssp SEEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE------SSS----------HCCHHHHHCCHHCCT--EEE
T ss_pred CEEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEec-----Chhh---------hccCHHHHHHHHHcCCeEee
Confidence 44566655555455 589999999999999999997 6763 23578999999999987543
No 240
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=23.77 E-value=2.5e+02 Score=27.56 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=54.3
Q ss_pred EEEecCCCC-----CHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeee--cc-hhhHHHHHHHHHHcCceEEecCC
Q 006845 13 GGDLHYFRI-----LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVF--SG-IADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 13 sg~~Hy~r~-----p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df--~~-~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
-|.+||+|. +.++.+.-++.++..++..- ..|--.|..++.+.- +. ...+.+|++..+++|.++++-.+
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~---~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKYG---TVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCcee---EEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 388998863 36778888899888655421 112233332343321 11 12478999999999999999888
Q ss_pred Cccccc----c---cCCCCcccccc
Q 006845 85 PYICAE----W---DLGGFPAWLLA 102 (629)
Q Consensus 85 Pyi~aE----w---~~GG~P~Wl~~ 102 (629)
++..-. . +....|-|+..
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~ 156 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAH 156 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecC
Confidence 753211 1 13467888876
No 241
>PLN02231 alanine transaminase
Probab=23.68 E-value=2.5e+02 Score=32.47 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=43.4
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 20 RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 20 r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
.+..+..++.++..+..|+++--+++. |-|.|.=-+++-+- +.+++++|+++|+.||..
T Consensus 252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e~---l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 252 GLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEEN---QRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHHH---HHHHHHHHHHcCCEEEEE
Confidence 455666666666666667766555665 77888766665554 899999999999999886
No 242
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=23.57 E-value=4.7e+02 Score=27.79 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceE
Q 006845 64 DLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIV 143 (629)
Q Consensus 64 Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII 143 (629)
.+.+.|+.||+.|++|+|-.|- |. | . . + ..++ +..+++.+.|...++++ .+=
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG-----~~-~-------~--~-~---~~~~---~~~~~fa~sl~~~~~~~------g~D 112 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGG-----AN-G-------H--V-D---LNHT---AQEDNFVDSIVAIIKEY------GFD 112 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeC-----CC-C-------c--c-c---cCCH---HHHHHHHHHHHHHHHHh------CCC
Confidence 4788899999999999999542 11 1 0 0 0 1222 33456666777777765 345
Q ss_pred EEeeccccCCCC----Cc-HHHHHHHHHHHHHhcCCceEE
Q 006845 144 MVQIENEFGSYG----DD-KEYLHHLVTLARAHLGKDIIL 178 (629)
Q Consensus 144 ~~QvENEyg~~~----~~-~~y~~~l~~~~~~~~G~~v~l 178 (629)
++.|+=|+.... .+ ..|...|+++-. .++.+..|
T Consensus 113 GiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~-~~~~~~~l 151 (312)
T cd02871 113 GLDIDLESGSNPLNATPVITNLISALKQLKD-HYGPNFIL 151 (312)
T ss_pred eEEEecccCCccCCcHHHHHHHHHHHHHHHH-HcCCCeEE
Confidence 788888886532 12 445555555443 35544333
No 243
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=23.19 E-value=6.8e+02 Score=25.17 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=62.0
Q ss_pred CEeeEEEEEEecCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCCC
Q 006845 6 GEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (629)
Q Consensus 6 G~~~~~~sg~~Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpGP 85 (629)
.--+++++|.+-. +.+.+.....++.+++.... +|+...=||.. +. +.+++.+..++.+..+.. -..
T Consensus 41 ~~D~viiaGDl~~-~~~~~~~~~~l~~l~~l~~~---v~~V~GNHD~~-----~~---~~~~~~~~l~~~~~~~~~-n~~ 107 (232)
T cd07393 41 PEDIVLIPGDISW-AMKLEEAKLDLAWIDALPGT---KVLLKGNHDYW-----WG---SASKLRKALEESRLALLF-NNA 107 (232)
T ss_pred CCCEEEEcCCCcc-CCChHHHHHHHHHHHhCCCC---eEEEeCCcccc-----CC---CHHHHHHHHHhcCeEEec-cCc
Confidence 4457889999863 44566777788888887543 45555666641 12 256666667777765442 122
Q ss_pred cccccccCCCCcccccccCC-----CeeecCCCHHHHHHHHHHHHHHHHhhcc
Q 006845 86 YICAEWDLGGFPAWLLAKKP-----ALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (629)
Q Consensus 86 yi~aEw~~GG~P~Wl~~~~p-----~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 133 (629)
.+...+..-|...|.....+ +......+..+.+.-.+|+++.++....
T Consensus 108 ~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~ 160 (232)
T cd07393 108 YIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKK 160 (232)
T ss_pred EEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 22222333344444322000 1111223445556666788877776654
No 244
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=23.16 E-value=2.9e+02 Score=24.98 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=36.6
Q ss_pred eEEEEEeecCCCCC-cceeecccccEEEEEECCCCCCCCCCCeEEEEEecccc--------ce--eEecccccCCccEEE
Q 006845 386 FLLYVSEFGGKDYG-SSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWSN--------RA--LSLPNFRCGSNISLF 454 (629)
Q Consensus 386 yilYrt~~~~~~~~-~~L~i~~~~D~a~V~vng~~~~~~~~~~~vG~l~~~~~--------~~--~~lp~~~~~~~~~L~ 454 (629)
.+.|++.|....++ .++.+ ...|.+.+|||| +.+-...+... .. -.+ .+.+++.+.|+
T Consensus 47 ~~~~~G~~~~~~~G~y~f~~-~~~d~~~l~idg---------~~vid~~~~~~~~~~~~~~~~~~~~v-~l~~g~~y~i~ 115 (145)
T PF07691_consen 47 SVRWTGYFKPPETGTYTFSL-TSDDGARLWIDG---------KLVIDNWGNQGGGFFNSGPSSTSGTV-TLEAGGKYPIR 115 (145)
T ss_dssp EEEEEEEEEESSSEEEEEEE-EESSEEEEEETT---------EEEEECSCTTTSTTTTTSBCCEEEEE-EE-TT-EEEEE
T ss_pred EEEEEEEEecccCceEEEEE-EecccEEEEECC---------EEEEcCCccccccccccccceEEEEE-EeeCCeeEEEE
Confidence 56788888764333 23333 478899999999 55544332111 11 111 12334567787
Q ss_pred EEEEecCcc
Q 006845 455 VLVENMGRV 463 (629)
Q Consensus 455 ILVEn~GRv 463 (629)
|...+.+..
T Consensus 116 i~y~~~~~~ 124 (145)
T PF07691_consen 116 IEYFNRGGD 124 (145)
T ss_dssp EEEEECSCS
T ss_pred EEEEECCCC
Confidence 777666543
No 245
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=23.11 E-value=1.6e+02 Score=31.10 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=49.5
Q ss_pred EeeE-EEEEEecCC-CCCHhHHHHHHHHHHHcCCCEEEEeccCCC-CCC--------CCCeeeecchhhHHHHHHHHHHc
Q 006845 7 EPFR-IIGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNL-HEP--------KPGKLVFSGIADLVSFLKLCQKL 75 (629)
Q Consensus 7 ~~~~-~~sg~~Hy~-r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~-hEp--------~~G~~df~~~~Dl~~fl~~a~~~ 75 (629)
++++ +..|.-+.. |||.++|.+.++.+++.|+..|-+ +.- .|. ....-+..|..+|.+++.+.+..
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~---~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a 254 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLP---WGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGA 254 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEe---CCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhC
Confidence 3444 345555654 499999999999998888765532 221 111 01124566777888888888888
Q ss_pred CceEEecCCC
Q 006845 76 DLLVMLRPGP 85 (629)
Q Consensus 76 GL~VilrpGP 85 (629)
.+.|=...||
T Consensus 255 ~l~I~nDSGp 264 (322)
T PRK10964 255 KAVVSVDTGL 264 (322)
T ss_pred CEEEecCCcH
Confidence 8877777666
No 246
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=23.07 E-value=61 Score=35.18 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCEEE-----EeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceE
Q 006845 27 EDRLLRAKALGLNTIQ-----TYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~-----~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~V 79 (629)
++.|+++|++|++.+. ++..--++.-.++....+. .-+.++.|++.||.+
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~---~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAER---WLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHH---HHHHHHHHHHcCCCc
Confidence 5668899999987554 2211111222344333332 568999999999875
No 247
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=22.98 E-value=1.2e+02 Score=24.56 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=16.7
Q ss_pred ceeecccccEEEEEECCCCCCCCCCCeEEEE
Q 006845 401 SLLISKVHDRAQVFISCPTEDNSGRPTYVGT 431 (629)
Q Consensus 401 ~L~i~~~~D~a~V~vng~~~~~~~~~~~vG~ 431 (629)
.|.|...-..|.||||| +++|.
T Consensus 3 ~l~V~s~p~gA~V~vdg---------~~~G~ 24 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDG---------KYIGT 24 (71)
T ss_pred EEEEEEECCCCEEEECC---------EEecc
Confidence 45566555678999999 88884
No 248
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=22.85 E-value=7.9e+02 Score=24.75 Aligned_cols=130 Identities=15% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeec--chhhHHHHHHHHHHcCceEEec------CCCcccccccCC----
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLVMLR------PGPYICAEWDLG---- 94 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~--~~~Dl~~fl~~a~~~GL~Vilr------pGPyi~aEw~~G---- 94 (629)
++.++.|+++|++.+.+- |=|| |||. + |.+.++.++++|+..+-- ..||.--|-+.-
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH~-----fD~G~~g---l~~t~~~l~~a~i~~~g~~~~~~~~~~~~i~~~~g~kIg~ 131 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNHS-----LDYGEEG---LLDTLAALDAAGIAHVGAGRNLAEARKPAIVEVKGIKIAL 131 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCcc-----cccchHH---HHHHHHHHHHCCCCEeeCCCChHHhhCcEEEEECCEEEEE
Q ss_pred ------CCcccccccCCCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeeccccCCCCCcHHHHHHHHHHH
Q 006845 95 ------GFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLA 168 (629)
Q Consensus 95 ------G~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y~~~l~~~~ 168 (629)
..|.|.....+.. +...++...+.+.++++++-+. +.. -|+..+...||. .....+.+.+...+
T Consensus 132 ig~t~~~~~~~~~~~~~~g-~~~~~~~~~~~i~~~i~~lr~~-~D~------vIv~~H~G~e~~--~~p~~~~~~~A~~l 201 (239)
T smart00854 132 LAYTYGTNNGWAASKDRPG-VALLPDLDREKILADIARARKK-ADV------VIVSLHWGVEYQ--YEPTDEQRELAHAL 201 (239)
T ss_pred EEEEcCCCCCcccCCCCCC-eeecCcCCHHHHHHHHHHHhcc-CCE------EEEEecCccccC--CCCCHHHHHHHHHH
Q ss_pred HHhcCCceEE
Q 006845 169 RAHLGKDIIL 178 (629)
Q Consensus 169 ~~~~G~~v~l 178 (629)
.+ .|+|+++
T Consensus 202 ~~-~G~DvIi 210 (239)
T smart00854 202 ID-AGADVVI 210 (239)
T ss_pred HH-cCCCEEE
No 249
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=22.70 E-value=2.2e+02 Score=28.43 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=41.1
Q ss_pred EEEEEecCCCCCHhHHHHHHHHHH-HcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEecCC
Q 006845 11 IIGGDLHYFRILPQHWEDRLLRAK-ALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (629)
Q Consensus 11 ~~sg~~Hy~r~p~~~W~~~l~k~k-a~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~VilrpG 84 (629)
+..+.+.+.. .+...+.|++.. +.|+-.|..+-.. +.++.......+.++++|+++|+-|++.+|
T Consensus 73 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~Gv~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 73 IGFAAIPPPD--PEDAVEELERALQELGFRGVKLHPDL-------GGFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp EEEEEETTTS--HHHHHHHHHHHHHTTTESEEEEESSE-------TTCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred EEEEEecCCC--chhHHHHHHHhccccceeeeEecCCC-------CccccccHHHHHHHHHHHHhhccceeeecc
Confidence 3344455433 456666665555 9999999986532 222222222225999999999999999976
No 250
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=22.33 E-value=1.9e+02 Score=33.25 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=44.9
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 18 y~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
|-..|.+.-+..+++..+.|+..++++.+-|.. .++...++.+++.|..+...
T Consensus 91 y~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv------------~nl~~ai~~vk~ag~~~~~~ 143 (499)
T PRK12330 91 YRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP------------RNLEHAMKAVKKVGKHAQGT 143 (499)
T ss_pred ccCcchhHHHHHHHHHHHcCCCEEEEEecCChH------------HHHHHHHHHHHHhCCeEEEE
Confidence 556778888999999999999999998776665 67999999999999987444
No 251
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.21 E-value=3.7e+02 Score=20.63 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=38.5
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCe----eeec--chhhHHHHHHHHHHcCceEE
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK----LVFS--GIADLVSFLKLCQKLDLLVM 80 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~----~df~--~~~Dl~~fl~~a~~~GL~Vi 80 (629)
|....+.++.+.+.|+|.+++...=...+-..|. +.++ ...+++.+++..++.|..|.
T Consensus 9 ~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 9 PGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 5567889999999999999875321111111344 2332 33578899999999997663
No 252
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=22.03 E-value=2.3e+02 Score=30.23 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCce--EEecCCCcc-------cccccCCCCccc
Q 006845 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL--VMLRPGPYI-------CAEWDLGGFPAW 99 (629)
Q Consensus 29 ~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~--VilrpGPyi-------~aEw~~GG~P~W 99 (629)
.|++-.++|.+.+-|-.+ ||.+- +.+|++.|++.|+. ||+..-|-. .++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~~---~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVES---YLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchHH---HHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 566666789988888433 44444 89999999999954 555544422 145555679999
Q ss_pred ccccCCCeeecCCC-HHHHHHHHHHHHHHHHhhcc
Q 006845 100 LLAKKPALKLRSSD-RAYLQLVERWWGVLLPKIAP 133 (629)
Q Consensus 100 l~~~~p~~~~R~~~-~~y~~~~~~~~~~l~~~l~~ 133 (629)
+.++.... .+| ...+++--++..+++..|.+
T Consensus 235 l~~~l~~~---~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFDGL---DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 98742211 234 34555666666666666654
No 253
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=22.00 E-value=1.9e+02 Score=30.61 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=47.7
Q ss_pred CEeeEEEE-EE-e-cCCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCC------CC-CCCeeeecchhhHHHHHHHHHHc
Q 006845 6 GEPFRIIG-GD-L-HYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLH------EP-KPGKLVFSGIADLVSFLKLCQKL 75 (629)
Q Consensus 6 G~~~~~~s-g~-~-Hy~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~h------Ep-~~G~~df~~~~Dl~~fl~~a~~~ 75 (629)
+++++++. |+ . .+=|||.+.|.+.++++.+.|+..|-+.-+=... +. .+...|..|..+|..+..+.+..
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a 252 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALA 252 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhC
Confidence 45666554 33 2 3446999999999999988887766654331100 00 01234555655666666666666
Q ss_pred CceEEecCCC
Q 006845 76 DLLVMLRPGP 85 (629)
Q Consensus 76 GL~VilrpGP 85 (629)
.|.|=...||
T Consensus 253 ~l~I~~DSGp 262 (334)
T TIGR02195 253 KAVVTNDSGL 262 (334)
T ss_pred CEEEeeCCHH
Confidence 6665555444
No 254
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.97 E-value=1.5e+02 Score=32.09 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 28 ~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
++|+++.+.|+..|++.+..+..+ .+.+.++.|++.|+.|.+-
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~~------------~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEAD------------VSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchHH------------HHHHHHHHHHHCCCeEEEE
Confidence 568899999999999987655421 3789999999999998776
No 255
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=21.96 E-value=2e+02 Score=33.79 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=43.9
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEec
Q 006845 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 18 y~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
|-..|.+.-+..+++++++|+..|++..+.|.. +++...++.|+++|+.|...
T Consensus 85 ~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 85 YRHYADDVVERFVKKAVENGMDVFRIFDALNDP------------RNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred cccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCEEEEE
Confidence 444566777889999999999999998777652 57999999999999987755
No 256
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=21.68 E-value=2.1e+02 Score=29.73 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCce-EEecCCCcccc
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL-VMLRPGPYICA 89 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~-VilrpGPyi~a 89 (629)
.+..++.++++|++|+ -|+.+| +|. .+.++.|++.|.. |=|-.|||..+
T Consensus 112 ~~~l~~~i~~L~~~gI-rVSLFi-----dP~------------~~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 112 FDKLKPAIARLKDAGI-RVSLFI-----DPD------------PEQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHHCCC-EEEEEe-----CCC------------HHHHHHHHHhCcCEEEEechhhhcC
Confidence 4556788899999999 677754 565 5789999999995 77899999875
No 257
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=21.64 E-value=2.2e+02 Score=28.55 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=43.6
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCee-eecch--hhHHHHHHHHHHcCceEEecCCCcccccccCC
Q 006845 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKL-VFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG 94 (629)
Q Consensus 18 y~r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~-df~~~--~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~G 94 (629)
..|+..+|--..-+.+|+.||.++-.--.=..|-...=-| --.|. +|+.++ +..=++|+||||..|- -...
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KGEvE~~v~eL-----~F~~~~i~RPG~ll~~-R~es 176 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKGEVERDVIEL-----DFKHIIILRPGPLLGE-RTES 176 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccchhhhhhhhc-----cccEEEEecCcceecc-cccc
Confidence 3488899998899999999998765432222222221111 11121 222221 2334699999997663 3333
Q ss_pred CCcccccc
Q 006845 95 GFPAWLLA 102 (629)
Q Consensus 95 G~P~Wl~~ 102 (629)
-.=.||.+
T Consensus 177 r~geflg~ 184 (238)
T KOG4039|consen 177 RQGEFLGN 184 (238)
T ss_pred cccchhhh
Confidence 33345554
No 258
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.54 E-value=2.7e+02 Score=22.03 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=38.1
Q ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCC--eeeecchhhHHHHHHHHHHcCceEE
Q 006845 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG--KLVFSGIADLVSFLKLCQKLDLLVM 80 (629)
Q Consensus 23 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G--~~df~~~~Dl~~fl~~a~~~GL~Vi 80 (629)
+..-.+.++.+.+.|+|..+++..= ..+.... .+..+. .|.+++++..++.|..|+
T Consensus 12 pG~l~~i~~~l~~~~inI~~i~~~~-~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 12 PGQLADIAAIFKDRGVNIVSVLVYP-SKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEEec-cCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 3466778889999999999987531 1112222 344444 467799999999997664
No 259
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=21.50 E-value=1.2e+02 Score=24.93 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=32.0
Q ss_pred HHHHhhccccccCCCceEEEeecccc------CCC-C---CcHHHHHHHHHHHHHhcC
Q 006845 126 VLLPKIAPLLYDIGGPIVMVQIENEF------GSY-G---DDKEYLHHLVTLARAHLG 173 (629)
Q Consensus 126 ~l~~~l~~~~~~~ggpII~~QvENEy------g~~-~---~~~~y~~~l~~~~~~~~G 173 (629)
++++.++|++..+||.|-.+-|+++. |.. + ++..-...++++.+++++
T Consensus 3 ~~l~~IrP~L~~dGGdv~lv~v~~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~ 60 (68)
T PF01106_consen 3 EVLEEIRPYLQSDGGDVELVDVDDGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVP 60 (68)
T ss_dssp HHHHHCHHHHHHTTEEEEEEEEETTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHST
T ss_pred HHHHHhChHHHhcCCcEEEEEecCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 34555666666779999999999994 221 2 234455777777877544
No 260
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=21.31 E-value=1.7e+02 Score=32.82 Aligned_cols=62 Identities=16% Similarity=0.040 Sum_probs=43.0
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCce-EEecC
Q 006845 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL-VMLRP 83 (629)
Q Consensus 21 ~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~-Vilrp 83 (629)
+..+.-+..|+.+|++|+|.|-+++.=..--..+-.|.-. ..|-...++++.+.|.. .+|..
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~A-i~dAr~vfd~g~e~Gf~m~~Ldi 252 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDA-ISDARNVFDMGAELGFEMDILDI 252 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHH-HHHHHHHHHHHHhcCceEEEeec
Confidence 4466788899999999999999976543322222222221 24778889999999997 56664
No 261
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=21.22 E-value=2e+02 Score=26.50 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeccC-------------------CCCCCCCCee-eecchhhHHHHHHHHHHcCceEEec
Q 006845 24 QHWEDRLLRAKALGLNTIQTYVPW-------------------NLHEPKPGKL-VFSGIADLVSFLKLCQKLDLLVMLR 82 (629)
Q Consensus 24 ~~W~~~l~k~ka~G~NtV~~yv~W-------------------n~hEp~~G~~-df~~~~Dl~~fl~~a~~~GL~Vilr 82 (629)
+..+.-++.++..|+.++.....- .... ..+.+ =.||+.|+...++.+++.|..|++-
T Consensus 52 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~-~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~ 129 (149)
T cd06167 52 ERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKR-RIDTIVLVSGDSDFVPLVERLRELGKRVIVV 129 (149)
T ss_pred hhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhc-CCCEEEEEECCccHHHHHHHHHHcCCEEEEE
Confidence 455666678889999999887432 1222 23333 4578899999999999999998887
No 262
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.86 E-value=1.7e+02 Score=31.76 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCeeeecchhhHHHHHHHHHHcCceEEe
Q 006845 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (629)
Q Consensus 27 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~~df~~~~Dl~~fl~~a~~~GL~Vil 81 (629)
.++|+++.++|+..|++.++.+..+ .+.+.++.|++.|+.|..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d------------~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEAD------------VSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHH------------HHHHHHHHHHHcCCeEEE
No 263
>PLN03231 putative alpha-galactosidase; Provisional
Probab=20.49 E-value=1.2e+03 Score=25.78 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCHhHHHHHHH----HHHHcCCCEEEEeccCCCCCC----------------------CCCeeeec------chhhHHHH
Q 006845 21 ILPQHWEDRLL----RAKALGLNTIQTYVPWNLHEP----------------------KPGKLVFS------GIADLVSF 68 (629)
Q Consensus 21 ~p~~~W~~~l~----k~ka~G~NtV~~yv~Wn~hEp----------------------~~G~~df~------~~~Dl~~f 68 (629)
+..+.+++..+ .||++|.+.|-+-..|...+. .|..=.|= | +..+
T Consensus 15 i~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G---~k~l 91 (357)
T PLN03231 15 ISEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKG---FAPI 91 (357)
T ss_pred cCHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccC---cHHH
Confidence 55666766553 678999999999999975431 11111221 4 8889
Q ss_pred HHHHHHcCce--EEecCCCccccc
Q 006845 69 LKLCQKLDLL--VMLRPGPYICAE 90 (629)
Q Consensus 69 l~~a~~~GL~--VilrpGPyi~aE 90 (629)
.+.+++.||+ +-.-+|..-||-
T Consensus 92 ADyvHs~GLKfGIY~~~G~~tca~ 115 (357)
T PLN03231 92 AAKVHALGLKLGIHVMRGISTTAV 115 (357)
T ss_pred HHHHHhCCcceEEEecCCccchhc
Confidence 9999999998 556678888873
No 264
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=20.23 E-value=1.1e+03 Score=25.24 Aligned_cols=98 Identities=11% Similarity=0.139 Sum_probs=59.8
Q ss_pred HHHHHHcCCCEEEE---eccCCCCCCCCCeeeec--chhhHHHHHHHHHHcCceEEecCCCcccccccCCCCcccccccC
Q 006845 30 LLRAKALGLNTIQT---YVPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKK 104 (629)
Q Consensus 30 l~k~ka~G~NtV~~---yv~Wn~hEp~~G~~df~--~~~Dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~Wl~~~~ 104 (629)
|+-..+.|+..-|+ -+|+.-|+.-.+ |++. -..++++|-++++++|+.+.+.|+.|++
T Consensus 54 l~~~~~~~I~~~R~sS~l~P~~~h~~~~~-w~~~~~~~~~~~~~g~~~~~~~irls~Hp~y~in---------------- 116 (303)
T PRK02308 54 LKYNIAHGIGLFRLSSSLIPLATHPELEG-WDYIEPFKEELREIGEFIKEHNIRLSFHPDQFVV---------------- 116 (303)
T ss_pred HHHHHHCCCCEEEcccCcCCCCCChhhcc-cCCCCCCHHHHHHHHHHHHHcCCCeeccChhhhc----------------
Confidence 33445667777666 378999974333 4443 2357999999999999999999775553
Q ss_pred CCeeecCCCHHHHHHHHHHHHHHHHhhccccccCCCceEEEeecc
Q 006845 105 PALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (629)
Q Consensus 105 p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvEN 149 (629)
+-+.+|.-++..-+.+..-+..+...-+... ..|-+.+--
T Consensus 117 ----L~S~~~ev~e~Si~~L~~~~~~~~~lG~~~~-~~vViHpG~ 156 (303)
T PRK02308 117 ----LNSPKPEVVENSIKDLEYHAKLLDLMGIDDS-SKINIHVGG 156 (303)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CEEEECCCc
Confidence 2234565555555555555555544322111 256666544
No 265
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.21 E-value=2.3e+02 Score=29.65 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=47.7
Q ss_pred eEEEEEEecCC-CCCHhHHHHHHHHHHHcCCCEEEEeccCCCC-C---------CCCCeeeecchhhHHHHHHHHHHcCc
Q 006845 9 FRIIGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLH-E---------PKPGKLVFSGIADLVSFLKLCQKLDL 77 (629)
Q Consensus 9 ~~~~sg~~Hy~-r~p~~~W~~~l~k~ka~G~NtV~~yv~Wn~h-E---------p~~G~~df~~~~Dl~~fl~~a~~~GL 77 (629)
+.+.-|.-+.. |||.+.|.+.++.+.+.|+..|-+ +.-- | ..++. +..|..+|.+++.+.+...+
T Consensus 182 i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~---~g~~~e~~~~~~i~~~~~~~-~l~g~~sL~el~ali~~a~l 257 (319)
T TIGR02193 182 AVLLHATSRDDKTWPEERWRELARLLLARGLQIVLP---WGNDAEKQRAERIAEALPGA-VVLPKMSLAEVAALLAGADA 257 (319)
T ss_pred EEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEe---CCCHHHHHHHHHHHhhCCCC-eecCCCCHHHHHHHHHcCCE
Confidence 44455554555 499999999999998778876643 2210 1 11222 66677778888888777777
Q ss_pred eEEecCCC
Q 006845 78 LVMLRPGP 85 (629)
Q Consensus 78 ~VilrpGP 85 (629)
.|=...||
T Consensus 258 ~I~~DSgp 265 (319)
T TIGR02193 258 VVGVDTGL 265 (319)
T ss_pred EEeCCChH
Confidence 77666555
Done!