Query 006846
Match_columns 629
No_of_seqs 293 out of 958
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 15:20:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 1E-89 2.2E-94 700.7 22.6 258 207-491 1-258 (258)
2 KOG4441 Proteins containing BT 99.9 3.3E-22 7.2E-27 225.5 16.0 228 20-328 29-260 (571)
3 PHA02790 Kelch-like protein; P 99.9 5.8E-22 1.3E-26 219.0 9.1 134 21-165 16-154 (480)
4 PHA02713 hypothetical protein; 99.8 4.7E-21 1E-25 215.5 13.0 106 21-136 19-126 (557)
5 PHA03098 kelch-like protein; P 99.8 8.8E-19 1.9E-23 194.6 11.9 115 24-159 6-122 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 1.4E-16 3E-21 140.0 8.2 104 21-132 4-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 6.1E-15 1.3E-19 122.0 7.6 89 29-125 1-89 (90)
8 KOG2075 Topoisomerase TOP1-int 99.1 2.9E-10 6.2E-15 123.9 11.2 139 18-169 105-248 (521)
9 KOG4350 Uncharacterized conser 99.0 2.9E-10 6.2E-15 121.6 6.3 106 20-133 37-145 (620)
10 KOG4591 Uncharacterized conser 98.7 1.1E-08 2.4E-13 101.3 2.8 133 7-159 43-183 (280)
11 KOG4682 Uncharacterized conser 98.3 1.2E-06 2.5E-11 94.6 8.1 129 23-167 65-198 (488)
12 KOG0783 Uncharacterized conser 98.1 3.3E-06 7.1E-11 97.2 6.8 66 25-92 556-633 (1267)
13 KOG0783 Uncharacterized conser 98.0 6.7E-06 1.5E-10 94.7 6.3 126 27-171 712-847 (1267)
14 PF11822 DUF3342: Domain of un 97.7 3.2E-05 6.8E-10 82.1 3.9 94 30-133 1-104 (317)
15 smart00512 Skp1 Found in Skp1 96.6 0.0034 7.3E-08 56.2 5.3 80 30-112 4-104 (104)
16 PF02214 BTB_2: BTB/POZ domain 96.3 0.0033 7.1E-08 54.8 3.3 83 30-115 1-89 (94)
17 KOG2716 Polymerase delta-inter 96.0 0.042 9E-07 56.6 9.6 95 30-133 7-105 (230)
18 KOG3473 RNA polymerase II tran 93.9 0.2 4.3E-06 45.4 6.8 74 35-111 25-111 (112)
19 KOG1724 SCF ubiquitin ligase, 93.3 0.17 3.6E-06 49.7 5.9 90 35-133 13-127 (162)
20 KOG2838 Uncharacterized conser 92.8 0.09 2E-06 55.3 3.3 85 25-111 128-217 (401)
21 PF03931 Skp1_POZ: Skp1 family 92.2 0.24 5.2E-06 40.5 4.5 55 30-89 3-58 (62)
22 KOG3840 Uncharaterized conserv 82.8 6.1 0.00013 42.6 8.7 112 22-135 90-222 (438)
23 KOG2714 SETA binding protein S 76.3 5.4 0.00012 44.7 6.2 82 30-114 13-99 (465)
24 KOG2838 Uncharacterized conser 74.9 2.7 5.9E-05 44.6 3.3 56 38-96 262-329 (401)
25 PF01466 Skp1: Skp1 family, di 74.7 5.6 0.00012 34.1 4.7 34 94-133 10-43 (78)
26 COG5201 SKP1 SCF ubiquitin lig 68.6 20 0.00043 34.4 7.1 90 33-133 8-122 (158)
27 KOG0511 Ankyrin repeat protein 60.1 11 0.00023 42.0 4.2 82 30-115 295-380 (516)
28 KOG1665 AFH1-interacting prote 55.4 42 0.0009 35.1 7.3 83 29-114 10-98 (302)
29 PF14363 AAA_assoc: Domain ass 52.0 8.1 0.00018 34.5 1.5 42 444-486 30-71 (98)
30 KOG1987 Speckle-type POZ prote 51.1 21 0.00045 37.2 4.5 90 36-133 109-201 (297)
31 KOG0511 Ankyrin repeat protein 50.8 3.6 7.8E-05 45.5 -1.1 90 18-113 138-232 (516)
32 KOG3713 Voltage-gated K+ chann 42.5 1.1E+02 0.0025 35.0 8.8 84 26-114 29-126 (477)
33 PHA00617 ribbon-helix-helix do 29.7 63 0.0014 28.4 3.4 37 215-251 44-80 (80)
34 KOG2715 Uncharacterized conser 29.3 2.2E+02 0.0047 28.8 7.3 84 28-114 21-109 (210)
35 PF10929 DUF2811: Protein of u 28.0 40 0.00087 27.9 1.8 19 453-471 8-26 (57)
36 COG3510 CmcI Cephalosporin hyd 23.8 59 0.0013 33.5 2.4 34 441-474 183-218 (237)
37 PF11123 DNA_Packaging_2: DNA 23.0 50 0.0011 28.9 1.5 16 453-468 31-46 (82)
38 KOG2016 NEDD8-activating compl 22.2 1E+02 0.0022 35.3 4.1 61 411-471 344-434 (523)
39 PF01402 RHH_1: Ribbon-helix-h 20.7 1.1E+02 0.0023 22.2 2.7 35 216-250 5-39 (39)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=1e-89 Score=700.65 Aligned_cols=258 Identities=55% Similarity=0.863 Sum_probs=226.0
Q ss_pred CCchhhhhhccChhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcCCcccCCCCCCCcCCCCCCCchhhhhHhHHHHHH
Q 006846 207 KGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLE 286 (629)
Q Consensus 207 ~dWW~eDl~~L~idlf~rVi~amk~~g~~~~~~Ig~al~~YA~r~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~llE 286 (629)
+|||||||+.|++|+|+|||.+|+++|+. +++||++|++||+||||+..+...... ...........+||.+||
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~-~~~I~~~l~~Ya~k~l~~~~~~~~~~~-----~~~~~~~~~~~~~r~llE 74 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMK-PEVIGEALMHYAKKWLPGLSRSSSGSS-----SSAESSTSSENEQRELLE 74 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCccccccccc-----ccccccchhHHHHHHHHH
Confidence 58999999999999999999999999986 489999999999999999865421111 111112336779999999
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhhcccccccccccCCCCCCCccccHHHHHHHHHHHH
Q 006846 287 SIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFK 366 (629)
Q Consensus 287 tiV~LLP~ek~svsc~FL~~LLr~A~~l~as~~cr~~LerRIg~qLd~AtldDLLIPs~~~~~~tlYDVD~V~ril~~Fl 366 (629)
+||+|||.+|++|||+|||+|||+|+++++|.+||.+||+|||+|||||||+|||||+.....+|+||||+|+|||++||
T Consensus 75 tiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl 154 (258)
T PF03000_consen 75 TIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFL 154 (258)
T ss_pred HHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999993334369999999999999999
Q ss_pred hcCCCCCCCCCCCcccccccccccccchhhhhhhhhcCCCCCchhHHHHHhhHHHhhhhhccCCCCChhhHHHHHHhcCC
Q 006846 367 LQGQSPPTSPPRSKLGFERRRSRSAENINFELQESRRSSSASHGSKLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPE 446 (629)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~r~~r~~~~~~~e~~~~~~~~~~~~~~l~~VakLvD~YLaEIA~D~nL~~sKF~~LAe~lPd 446 (629)
.+.+..... +..+....++++..++.+||||||+||+|||+|+||+|+||++|||++|+
T Consensus 155 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~ 213 (258)
T PF03000_consen 155 SQEEEAGEE---------------------EESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPD 213 (258)
T ss_pred hcccccccc---------------------cccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCH
Confidence 986542111 11111223456788999999999999999999999999999999999999
Q ss_pred CCcccccchhHHHHHHHHhCCCCcHHHHhhhhcccccCCCCHHHh
Q 006846 447 FSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEAC 491 (629)
Q Consensus 447 ~aR~~hDgLYRAIDiYLK~Hp~ls~~Er~~lCr~ldc~KLS~eAc 491 (629)
+||++|||||||||||||+||+||++||++||++|||||||+|||
T Consensus 214 ~aR~~hD~LYrAID~YLk~Hp~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 214 SARPSHDGLYRAIDIYLKAHPGLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred hhhhccchHHHHHHHHHHHcccCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999999999999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.88 E-value=3.3e-22 Score=225.45 Aligned_cols=228 Identities=15% Similarity=0.197 Sum_probs=172.0
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhh
Q 006846 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYN 99 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~N 99 (629)
-++.++.+|||+|.|++++|++||.|||++|+||++||++...+..+.+|+|++++ +++++++++|+||+++.|+.+|
T Consensus 29 ~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt~~i~i~~~n 106 (571)
T KOG4441|consen 29 ELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYTGKLEISEDN 106 (571)
T ss_pred HHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhcceEEechHh
Confidence 37899999999999999999999999999999999999998666555899999986 6999999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhcc-chh--HHHHhhcCCchhHhhHHhCchhHHHHHHHHHhccCCC
Q 006846 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHG-WRD--SIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPS 176 (629)
Q Consensus 100 V~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~s-w~d--sia~L~sC~~L~~~Ae~l~iv~rcidsiA~ka~~d~~ 176 (629)
|+.|+.||.+|||++ |++.|+.||.+++.++ |.. .++.+++|.+|...|+.+ |.+++.+-...
T Consensus 107 Vq~ll~aA~~lQi~~------v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~-i~~~F~~v~~~------- 172 (571)
T KOG4441|consen 107 VQELLEAASLLQIPE------VVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEY-ILQHFAEVSKT------- 172 (571)
T ss_pred HHHHHHHHHHhhhHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHHhcc-------
Confidence 999999999999997 6889999999999988 443 678888888888888874 67777663311
Q ss_pred CCcCccccCCCCCCCCCCCCCcccccCCCCCCchhhhhhccChhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcCCcc
Q 006846 177 KVSLSHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNIS 256 (629)
Q Consensus 177 ~~~~s~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~eDl~~L~idlf~rVi~amk~~g~~~~~~Ig~al~~YA~r~L~~~~ 256 (629)
||.-.|+.+.+..+|..-.-. +..++- +...+-+|+-+
T Consensus 173 -----------------------------------eefl~L~~~~l~~ll~~d~l~-v~~E~~----vf~a~~~Wv~~-- 210 (571)
T KOG4441|consen 173 -----------------------------------EEFLLLSLEELIGLLSSDDLN-VDSEEE----VFEAAMRWVKH-- 210 (571)
T ss_pred -----------------------------------HHhhCCCHHHHHhhccccCCC-cCCHHH----HHHHHHHHHhc--
Confidence 455557777766666654332 223333 34445666632
Q ss_pred cCCCCCCCcCCCCCCCchhhhhHhHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 006846 257 RNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEK-GSVSCSFLLKLLKAANILNASSSSKMELARRV 328 (629)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~LLP~ek-~svsc~FL~~LLr~A~~l~as~~cr~~LerRI 328 (629)
+ ...++. .+..||..-+ .-++-.||.......-.+.....|+.-|..=.
T Consensus 211 -d------------------~~~R~~----~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 211 -D------------------FEEREE----HLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred -C------------------HhhHHH----HHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 0 000111 1122222222 23777899999999989999999998875433
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.86 E-value=5.8e-22 Score=218.95 Aligned_cols=134 Identities=12% Similarity=0.086 Sum_probs=106.6
Q ss_pred eeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeec--CCCCCCHHHHHHHHHHhhcCccccchh
Q 006846 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQL--PDFPGGIDAFELCAKFCYGITITLSAY 98 (629)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L--~d~pGGaeaFell~~FcYg~~i~it~~ 98 (629)
++.+|.+|||++. .|.+|++||.|||++|+|||+||++++.+++ .+|.+ .+++ +++|+.+++|+|||+|.||.+
T Consensus 16 ~~~~~~~~~~~~~-~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~--~~~l~~lldy~YTg~l~it~~ 91 (480)
T PHA02790 16 LSMTKKFKTIIEA-IGGNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLD--IHSLTSIVIYSYTGKVYIDSH 91 (480)
T ss_pred HHhhhhhceEEEE-cCcEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCcC--HHHHHHHHHhheeeeEEEecc
Confidence 5678999998775 4669999999999999999999999876655 45665 3775 799999999999999999999
Q ss_pred hHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhcc-chh--HHHHhhcCCchhHhhHHhCchhHHHH
Q 006846 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHG-WRD--SIVTLQSTKAFPLWSEDLGITSRCIE 165 (629)
Q Consensus 99 NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~s-w~d--sia~L~sC~~L~~~Ae~l~iv~rcid 165 (629)
||+.|+.||.+|||++ |++.|++||.++|.++ |.+ .++..++|.+|...|.++ |.++|.+
T Consensus 92 nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~f-i~~nF~~ 154 (480)
T PHA02790 92 NVVNLLRASILTSVEF------IIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDF-IAKHFLE 154 (480)
T ss_pred cHHHHHHHHHHhChHH------HHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHH-HHHhHHH
Confidence 9999999999999996 6899999999999776 333 444444555554444442 4444443
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.85 E-value=4.7e-21 Score=215.55 Aligned_cols=106 Identities=21% Similarity=0.305 Sum_probs=96.9
Q ss_pred eeccCCceeEEEEEc-CEEEEecccccccCCHHHHHhhcCCCCC-CCCceeecCCCCCCHHHHHHHHHHhhcCccccchh
Q 006846 21 SISSEVSSDLIIQVK-GTRYLLHKFPLLSKCLRLQRLCSESPES-SQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAY 98 (629)
Q Consensus 21 ~~~~~~lcDV~I~V~-g~~F~lHK~vLas~S~YFr~Lft~~~~~-~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~ 98 (629)
++.++.+|||+|.|+ |++|++||.|||++|+||++||++++.+ ..+.+|+|++++ +++|+.+++|+||++ |+.+
T Consensus 19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt~~--i~~~ 94 (557)
T PHA02713 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYNRH--ISSM 94 (557)
T ss_pred HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcCCC--CCHH
Confidence 788899999999998 8999999999999999999999998654 324789999996 799999999999997 6899
Q ss_pred hHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhcc
Q 006846 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHG 136 (629)
Q Consensus 99 NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~s 136 (629)
||+.|+.||++|||++ |++.|++||.+++.++
T Consensus 95 nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l~~~ 126 (557)
T PHA02713 95 NVIDVLKCADYLLIDD------LVTDCESYIKDYTNHD 126 (557)
T ss_pred HHHHHHHHHHHHCHHH------HHHHHHHHHHhhCCcc
Confidence 9999999999999996 7899999999999765
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.77 E-value=8.8e-19 Score=194.57 Aligned_cols=115 Identities=19% Similarity=0.168 Sum_probs=103.0
Q ss_pred cCCceeEEEEE--cCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhhHH
Q 006846 24 SEVSSDLIIQV--KGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIV 101 (629)
Q Consensus 24 ~~~lcDV~I~V--~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~NV~ 101 (629)
++.+|||+|.| +|++|++||.+|+++|+||++||++.+. + .+|+|++ + +++|+.+++|+|||+++|+.+||+
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~-~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~ 79 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--E-NEINLNI-D--YDSFNEVIKYIYTGKINITSNNVK 79 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--C-ceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHH
Confidence 68899999998 9999999999999999999999998766 3 6899988 5 799999999999999999999999
Q ss_pred HHHHhHhhcCcchhhccccHHHHHHHHHHHhhhccchhHHHHhhcCCchhHhhHHhCc
Q 006846 102 AARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGI 159 (629)
Q Consensus 102 ~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~sw~dsia~L~sC~~L~~~Ae~l~i 159 (629)
.|+.||++|||++ |+..|++||.+.+.. .||..++.+|+.+++
T Consensus 80 ~ll~~A~~l~~~~------l~~~C~~~l~~~l~~---------~nc~~~~~~a~~~~~ 122 (534)
T PHA03098 80 DILSIANYLIIDF------LINLCINYIIKIIDD---------NNCIDIYRFSFFYGC 122 (534)
T ss_pred HHHHHHHHhCcHH------HHHHHHHHHHHhCCH---------hHHHHHHHHHHHcCc
Confidence 9999999999996 789999999998854 467777777777663
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.67 E-value=1.4e-16 Score=139.99 Aligned_cols=104 Identities=27% Similarity=0.331 Sum_probs=90.2
Q ss_pred eeccCCceeEEEEEc-CEEEEecccccccCCHHHHHhhcCC-CCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccc-h
Q 006846 21 SISSEVSSDLIIQVK-GTRYLLHKFPLLSKCLRLQRLCSES-PESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLS-A 97 (629)
Q Consensus 21 ~~~~~~lcDV~I~V~-g~~F~lHK~vLas~S~YFr~Lft~~-~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it-~ 97 (629)
+..++.+||++|.|+ +..|++||.+|+++|+||++||... ..+....+|.+++++ +++|+.+++|+|++.+.++ .
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-T
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHH
Confidence 456788999999999 7999999999999999999999987 333332478899997 7999999999999999998 9
Q ss_pred hhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHh
Q 006846 98 YNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSC 132 (629)
Q Consensus 98 ~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~ 132 (629)
+|+..++..|.+|+|++ |+..|+.||.+.
T Consensus 82 ~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 99999999999999995 899999999875
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.57 E-value=6.1e-15 Score=121.98 Aligned_cols=89 Identities=24% Similarity=0.290 Sum_probs=79.2
Q ss_pred eEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhhHHHHHHhHh
Q 006846 29 DLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAE 108 (629)
Q Consensus 29 DV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~NV~~L~cAA~ 108 (629)
||++.|+|..|++||.+|+++|+||++||.+...+.....|.+.+++ +++|+.+++|+||+++.++..|+..++.+|.
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999986443323689998875 7999999999999999999999999999999
Q ss_pred hcCcchhhccccHHHHH
Q 006846 109 YLQMTEDVEKGNLIYKI 125 (629)
Q Consensus 109 ~LqMte~~~~gNLi~~c 125 (629)
+++|.+ |+..|
T Consensus 79 ~~~~~~------l~~~c 89 (90)
T smart00225 79 YLQIPG------LVELC 89 (90)
T ss_pred HHCcHH------HHhhh
Confidence 999986 55565
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.12 E-value=2.9e-10 Score=123.86 Aligned_cols=139 Identities=18% Similarity=0.238 Sum_probs=117.6
Q ss_pred ceeeeccCCceeEEEEEcC-----EEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCc
Q 006846 18 AVRSISSEVSSDLIIQVKG-----TRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGIT 92 (629)
Q Consensus 18 ~~~~~~~~~lcDV~I~V~g-----~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~ 92 (629)
+.-+..++..+||++.|++ +.||+||++|+..|.-|.+||..+..+....+|+++|+. |.+|...++|+|+-.
T Consensus 105 ~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flYsde 182 (521)
T KOG2075|consen 105 QAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLYSDE 182 (521)
T ss_pred hHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHhcch
Confidence 3334567889999999984 589999999999999999999997655533799999996 799999999999999
Q ss_pred cccchhhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhccchhHHHHhhcCCchhHhhHHhCchhHHHHHHHH
Q 006846 93 ITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIAS 169 (629)
Q Consensus 93 i~it~~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~sw~dsia~L~sC~~L~~~Ae~l~iv~rcidsiA~ 169 (629)
+.+.++||..++.||.-.-.+ .|...|.+||+..+.. .+.+..|.+|. .+.++-.++++|++.|.-
T Consensus 183 v~~~~dtvi~tl~~AkKY~Vp------aLer~CVkflr~~l~~--~naf~~L~q~A---~lf~ep~Li~~c~e~id~ 248 (521)
T KOG2075|consen 183 VKLAADTVITTLYAAKKYLVP------ALERQCVKFLRKNLMA--DNAFLELFQRA---KLFDEPSLISICLEVIDK 248 (521)
T ss_pred hhhhHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHhcCC--hHHHHHHHHHH---HhhcCHHHHHHHHHHhhh
Confidence 999999999999999777666 4889999999999977 56777787874 345556689999998864
No 9
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.02 E-value=2.9e-10 Score=121.61 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=88.3
Q ss_pred eeeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccch--
Q 006846 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-- 97 (629)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~-- 97 (629)
.++..+...||++.|++..|++||.+||++|.|||+|+-.++.+..+..|.|++- .+++|..+++|+|||++.++.
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t--~~eAF~~lLrYiYtg~~~l~~~~ 114 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQET--NSEAFRALLRYIYTGKIDLAGVE 114 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccc--cHHHHHHHHHHHhhcceecccch
Confidence 4677788999999999999999999999999999999999876665578888864 479999999999999998865
Q ss_pred -hhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhh
Q 006846 98 -YNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 98 -~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
+-..+.+.-|+..++.+ |-....+||.+.+
T Consensus 115 ed~lld~LslAh~Ygf~~------Le~aiSeYl~~iL 145 (620)
T KOG4350|consen 115 EDILLDYLSLAHRYGFIQ------LETAISEYLKEIL 145 (620)
T ss_pred HHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHH
Confidence 44455566666666664 6778899998877
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.65 E-value=1.1e-08 Score=101.32 Aligned_cols=133 Identities=19% Similarity=0.237 Sum_probs=105.5
Q ss_pred cCCCCccccCC---ceeeeccCCceeEEEEEc---CEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHH
Q 006846 7 GSRPDTFYTSE---AVRSISSEVSSDLIIQVK---GTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDA 80 (629)
Q Consensus 7 gsk~d~f~~~~---~~~~~~~~~lcDV~I~V~---g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaea 80 (629)
.|-||+|..+- .+-+.....++||++.++ ++.+++||+|||++|++.+ |.+...+.. .+..+.|.. +++
T Consensus 43 eSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~dDad--~Ea 117 (280)
T KOG4591|consen 43 ESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDLDDAD--FEA 117 (280)
T ss_pred cCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhcccccC--HHH
Confidence 46799998774 233567788999999999 5689999999999999865 344433332 456677774 799
Q ss_pred HHHHHHHhhcCccccchhhH--HHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhccchhHHHHhhcCCchhHhhHHhC
Q 006846 81 FELCAKFCYGITITLSAYNI--VAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLG 158 (629)
Q Consensus 81 Fell~~FcYg~~i~it~~NV--~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~sw~dsia~L~sC~~L~~~Ae~l~ 158 (629)
|..+++++||-.|++..+.+ ..++..|..+|+.- |..+|+.=|-..+ ...||..++..||++.
T Consensus 118 ~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n 182 (280)
T KOG4591|consen 118 FHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALL---------HVDNCIKFYEFAEELN 182 (280)
T ss_pred HHHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHhh
Confidence 99999999999999877665 56788899999874 7889998888777 4579999999999976
Q ss_pred c
Q 006846 159 I 159 (629)
Q Consensus 159 i 159 (629)
.
T Consensus 183 ~ 183 (280)
T KOG4591|consen 183 A 183 (280)
T ss_pred H
Confidence 4
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.34 E-value=1.2e-06 Score=94.56 Aligned_cols=129 Identities=20% Similarity=0.257 Sum_probs=103.8
Q ss_pred ccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCcee--ecCCCCCCHHHHHHHHHHhhcCccccchhhH
Q 006846 23 SSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIV--QLPDFPGGIDAFELCAKFCYGITITLSAYNI 100 (629)
Q Consensus 23 ~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V--~L~d~pGGaeaFell~~FcYg~~i~it~~NV 100 (629)
.+|.-+||+|..-|.+.++||.-| .-|+||..||.+...+.+...| +|+|---...+|..++.=.|...|+|..+.|
T Consensus 65 ~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv 143 (488)
T KOG4682|consen 65 LQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDV 143 (488)
T ss_pred hcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHH
Confidence 468889999999999999999766 5699999999987544332444 4544333579999999999999999999999
Q ss_pred HHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhccchhHHHHhhcCCchhHhhHHhCchh---HHHHHH
Q 006846 101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITS---RCIEAI 167 (629)
Q Consensus 101 ~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~sw~dsia~L~sC~~L~~~Ae~l~iv~---rcidsi 167 (629)
..++.||.+||+.. |+++|.+-+.+.+.+ ++-...+..+..||+++ .|.+-+
T Consensus 144 ~gvlAaA~~lqldg------l~qrC~evMie~lsp---------kta~~yYea~ckYgle~vk~kc~ewl 198 (488)
T KOG4682|consen 144 VGVLAAACLLQLDG------LIQRCGEVMIETLSP---------KTACGYYEAACKYGLESVKKKCLEWL 198 (488)
T ss_pred HHHHHHHHHHHHhh------HHHHHHHHHHHhcCh---------hhhhHhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999984 899999999999966 35556777888887653 344444
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.14 E-value=3.3e-06 Score=97.20 Aligned_cols=66 Identities=24% Similarity=0.372 Sum_probs=55.1
Q ss_pred CCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCC------------CCCceeecCCCCCCHHHHHHHHHHhhcCc
Q 006846 25 EVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPES------------SQHQIVQLPDFPGGIDAFELCAKFCYGIT 92 (629)
Q Consensus 25 ~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~------------~~~~~V~L~d~pGGaeaFell~~FcYg~~ 92 (629)
+-..|||+.||+..|++||++|+++|++||+||...... ..+..|.+.++| |.+||+++.|+||.+
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc
Confidence 356799999999999999999999999999999864322 112456688998 599999999999975
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.02 E-value=6.7e-06 Score=94.70 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=94.9
Q ss_pred ceeEEEEEcCEEEEecccccccCCHHHHHhhcCC-CCCCCCceeecCCCCCCHHHHHHHHHHhh-cCcccc-----chhh
Q 006846 27 SSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSES-PESSQHQIVQLPDFPGGIDAFELCAKFCY-GITITL-----SAYN 99 (629)
Q Consensus 27 lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~-~~~~~~~~V~L~d~pGGaeaFell~~FcY-g~~i~i-----t~~N 99 (629)
.|||++. +|+.|.|||.+|.+++.||..||... ++.+ .|.....|-.+|.++.+++|.| +-++.+ ..+=
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~s---S~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESS---SITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhc---cceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 4455555 88889999999999999999999875 4433 3455555656899999999999 444433 2233
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhccchhHHHHhhcCCchhHhhHHhC---chhHHHHHHHHHh
Q 006846 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLG---ITSRCIEAIASKV 171 (629)
Q Consensus 100 V~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~sw~dsia~L~sC~~L~~~Ae~l~---iv~rcidsiA~ka 171 (629)
+..++..|+.|=+++ |...|+.-|.+.+ .|++|..|+.+|-.|+ +-.+|+|=|.-.+
T Consensus 788 ~~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N~ 847 (1267)
T KOG0783|consen 788 MFEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHNI 847 (1267)
T ss_pred hHHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHhH
Confidence 667777888888886 7888998888887 6789988888877665 4568998876544
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.67 E-value=3.2e-05 Score=82.13 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=75.4
Q ss_pred EEEEEcC------EEEEecccccccCCHHHHHhhcC---CCCCCCCceeecC-CCCCCHHHHHHHHHHhhcCccccchhh
Q 006846 30 LIIQVKG------TRYLLHKFPLLSKCLRLQRLCSE---SPESSQHQIVQLP-DFPGGIDAFELCAKFCYGITITLSAYN 99 (629)
Q Consensus 30 V~I~V~g------~~F~lHK~vLas~S~YFr~Lft~---~~~~~~~~~V~L~-d~pGGaeaFell~~FcYg~~i~it~~N 99 (629)
|+|+|-| +.|.|.+.+|.+.=.||+..+.. .......-.|..+ |+ .+|+-+++|+++-...||+.|
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~N 76 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSN 76 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCc
Confidence 4566633 47999999999999999999964 2211111334444 66 699999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHHHHhh
Q 006846 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 100 V~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
|+.++-.|+||||++ |++.|-.|+..++
T Consensus 77 vvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999996 8889999987665
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.61 E-value=0.0034 Score=56.20 Aligned_cols=80 Identities=11% Similarity=0.242 Sum_probs=60.6
Q ss_pred EEEE-EcCEEEEecccccccCCHHHHHhhcCCCC-CCCCceeecCCCCCCHHHHHHHHHHhhcCc-----------c---
Q 006846 30 LIIQ-VKGTRYLLHKFPLLSKCLRLQRLCSESPE-SSQHQIVQLPDFPGGIDAFELCAKFCYGIT-----------I--- 93 (629)
Q Consensus 30 V~I~-V~g~~F~lHK~vLas~S~YFr~Lft~~~~-~~~~~~V~L~d~pGGaeaFell~~FcYg~~-----------i--- 93 (629)
|++. -+|+.|.+.+.+. ..|+-++.|+..... ......|.|++|+ +.+++.+++||+--+ +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 4444 3778999999855 689999999986432 2121479999998 499999999998321 1
Q ss_pred -----ccchhhHHHHHHhHhhcCc
Q 006846 94 -----TLSAYNIVAARCAAEYLQM 112 (629)
Q Consensus 94 -----~it~~NV~~L~cAA~~LqM 112 (629)
.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1667789999999999986
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.32 E-value=0.0033 Score=54.79 Aligned_cols=83 Identities=16% Similarity=0.108 Sum_probs=61.5
Q ss_pred EEEEEcCEEEEecccccc-cCCHHHHHhhcCC---CCCCCCceeecCCCCCCHHHHHHHHHHhhc-Cccccc-hhhHHHH
Q 006846 30 LIIQVKGTRYLLHKFPLL-SKCLRLQRLCSES---PESSQHQIVQLPDFPGGIDAFELCAKFCYG-ITITLS-AYNIVAA 103 (629)
Q Consensus 30 V~I~V~g~~F~lHK~vLa-s~S~YFr~Lft~~---~~~~~~~~V~L~d~pGGaeaFell~~FcYg-~~i~it-~~NV~~L 103 (629)
|+|.|||+.|..-+..|. -...+|.+|+... .......++-|. -.|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 4477999999864 111112456654 247999999999999 777764 6789999
Q ss_pred HHhHhhcCcchh
Q 006846 104 RCAAEYLQMTED 115 (629)
Q Consensus 104 ~cAA~~LqMte~ 115 (629)
+..|+|.++.+.
T Consensus 78 ~~Ea~fy~l~~l 89 (94)
T PF02214_consen 78 LEEAEFYGLDEL 89 (94)
T ss_dssp HHHHHHHT-HHH
T ss_pred HHHHHHcCCCcc
Confidence 999999999863
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.042 Score=56.59 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=76.8
Q ss_pred EEEEEcCEEEEecccccccCCHHHHHhhcCCC--CCCCCceeecCCCCCCHHHHHHHHHHhhcCcccc--chhhHHHHHH
Q 006846 30 LIIQVKGTRYLLHKFPLLSKCLRLQRLCSESP--ESSQHQIVQLPDFPGGIDAFELCAKFCYGITITL--SAYNIVAARC 105 (629)
Q Consensus 30 V~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~--~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~i--t~~NV~~L~c 105 (629)
|.+.|||..|..+|.-|--..|||+.|+.... +.+....|-|+- .|.=|++|++|+=.|.+.| +..++.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDR---SpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDR---SPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecC---ChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 45899999999999999999999999998763 222223466543 3589999999999777766 5678889999
Q ss_pred hHhhcCcchhhccccHHHHHHHHHHHhh
Q 006846 106 AAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 106 AA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
=|+|..+++ |++.|+.=+....
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhcc
Confidence 999999996 8999998776654
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=93.93 E-value=0.2 Score=45.38 Aligned_cols=74 Identities=14% Similarity=0.231 Sum_probs=58.4
Q ss_pred cCEEEEecccccccCCHHHHHhhcCCC--CCCCCceeecCCCCCCHHHHHHHHHHh-----hcC------ccccchhhHH
Q 006846 35 KGTRYLLHKFPLLSKCLRLQRLCSESP--ESSQHQIVQLPDFPGGIDAFELCAKFC-----YGI------TITLSAYNIV 101 (629)
Q Consensus 35 ~g~~F~lHK~vLas~S~YFr~Lft~~~--~~~~~~~V~L~d~pGGaeaFell~~Fc-----Yg~------~i~it~~NV~ 101 (629)
+|.+|-+-|. .|.-|+-+|+|+.+.. .+.+..+|.+.+|| +..++.+..|. |++ .+.|.++=+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 6778888665 6778999999999642 22233689999998 68999888775 444 3578899999
Q ss_pred HHHHhHhhcC
Q 006846 102 AARCAAEYLQ 111 (629)
Q Consensus 102 ~L~cAA~~Lq 111 (629)
.|+.||+||+
T Consensus 102 eLL~aAn~Le 111 (112)
T KOG3473|consen 102 ELLMAANYLE 111 (112)
T ss_pred HHHHHhhhhc
Confidence 9999999997
No 19
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.17 Score=49.68 Aligned_cols=90 Identities=12% Similarity=0.168 Sum_probs=69.5
Q ss_pred cCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCcc---------------------
Q 006846 35 KGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITI--------------------- 93 (629)
Q Consensus 35 ~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i--------------------- 93 (629)
+|+.|..-.. .|-.|.-++.++.+..-......|-|+.|. +.+|..+++|||--+-
T Consensus 13 DG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEE-VARQSQTISAHMIEDGCADENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHH-HHHHhHHHHHHHHHcCCCccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 6788888665 566799999988764322111368899987 5999999999996331
Q ss_pred ----ccchhhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhh
Q 006846 94 ----TLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 94 ----~it~~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
.+...++..|.-||.||+|. +|+..||..+...+
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~------gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIK------GLLDLTCKTVANMI 127 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccH------HHHHHHHHHHHHHH
Confidence 23456899999999999999 48999999998877
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=92.77 E-value=0.09 Score=55.29 Aligned_cols=85 Identities=21% Similarity=0.206 Sum_probs=62.1
Q ss_pred CCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCC--ceeecCCCCCCHHHHHHHHHHhhcCcccc---chhh
Q 006846 25 EVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQH--QIVQLPDFPGGIDAFELCAKFCYGITITL---SAYN 99 (629)
Q Consensus 25 ~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~--~~V~L~d~pGGaeaFell~~FcYg~~i~i---t~~N 99 (629)
.+..||-|......|++||..|+++|++|+-+.....+.... ..|..-+|. -++|+..+.+.|++..-. .-.|
T Consensus 128 k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~tgEfgmEd~~fqn 205 (401)
T KOG2838|consen 128 KVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLITGEFGMEDLGFQN 205 (401)
T ss_pred eeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHhcccchhhcCCch
Confidence 456799999999999999999999999999988765443221 345566775 589999999999987633 3345
Q ss_pred HHHHHHhHhhcC
Q 006846 100 IVAARCAAEYLQ 111 (629)
Q Consensus 100 V~~L~cAA~~Lq 111 (629)
+..|-.-.+-++
T Consensus 206 ~diL~QL~edFG 217 (401)
T KOG2838|consen 206 SDILEQLCEDFG 217 (401)
T ss_pred HHHHHHHHHhhC
Confidence 555544444443
No 21
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=92.15 E-value=0.24 Score=40.54 Aligned_cols=55 Identities=7% Similarity=0.271 Sum_probs=42.1
Q ss_pred EEEEE-cCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhh
Q 006846 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCY 89 (629)
Q Consensus 30 V~I~V-~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcY 89 (629)
|+|.- +|+.|...+.+ |-.|+.++.|+........ .|.|++|+ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~-a~~S~~i~~ml~~~~~~~~--~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREA-AKQSKTIKNMLEDLGDEDE--PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHH-HTTSHHHHHHHHCTCCCGT--EEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhhhccccc--ccccCccC--HHHHHHHHHHHH
Confidence 34443 78899998875 4579999999987543322 69999997 599999999997
No 22
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=82.78 E-value=6.1 Score=42.61 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=78.7
Q ss_pred eccCCceeEEEEEcCEEEEecccccccCCH-HHHHhhcCC---CCCCCCceeecC-CCCCCHHHHHHHHHHhhcCccccc
Q 006846 22 ISSEVSSDLIIQVKGTRYLLHKFPLLSKCL-RLQRLCSES---PESSQHQIVQLP-DFPGGIDAFELCAKFCYGITITLS 96 (629)
Q Consensus 22 ~~~~~lcDV~I~V~g~~F~lHK~vLas~S~-YFr~Lft~~---~~~~~~~~V~L~-d~pGGaeaFell~~FcYg~~i~it 96 (629)
+..|..--++..|++..|-.-+++|-+.-. -+-.||..+ ...+...+.+.- ++ +...|..|++|--+|.|.-.
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi--~s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGM--TSSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcch--hHHHHHHHHHHHhcCceeCC
Confidence 445556678999999999999999887632 344566543 112223567764 66 47899999999889988754
Q ss_pred h-hhHHHHHHhHhhcCcchh---------------hccccHHHHHHHHHHHhhhc
Q 006846 97 A-YNIVAARCAAEYLQMTED---------------VEKGNLIYKIEVFFNSCILH 135 (629)
Q Consensus 97 ~-~NV~~L~cAA~~LqMte~---------------~~~gNLi~~ce~FL~~~v~~ 135 (629)
+ -.|-.|+.|.+||-+.-+ ++...-..+-+.||++.|++
T Consensus 168 ~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~ILP 222 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEIILP 222 (438)
T ss_pred CCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 4 678999999999987632 22233456677778777766
No 23
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=76.32 E-value=5.4 Score=44.67 Aligned_cols=82 Identities=13% Similarity=0.022 Sum_probs=61.5
Q ss_pred EEEEEcCEEEEecccccccCC--HHHHHhhcCCCCC--CCCceeecCCCCCCHHHHHHHHHHhhcCccccchhhHHHHHH
Q 006846 30 LIIQVKGTRYLLHKFPLLSKC--LRLQRLCSESPES--SQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARC 105 (629)
Q Consensus 30 V~I~V~g~~F~lHK~vLas~S--~YFr~Lft~~~~~--~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~NV~~L~c 105 (629)
|.+.|||+.|.--+.-|+... .+|-+|++..... ....-|-|. -.|+.|..+++|.-|+.+.+..--...++-
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 578999999999999888765 7999999754222 111224443 246999999999999999996644444554
Q ss_pred -hHhhcCcch
Q 006846 106 -AAEYLQMTE 114 (629)
Q Consensus 106 -AA~~LqMte 114 (629)
=|.|.++++
T Consensus 90 dEA~fYGl~~ 99 (465)
T KOG2714|consen 90 DEAMFYGLTP 99 (465)
T ss_pred hhhhhcCcHH
Confidence 899999986
No 24
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=74.88 E-value=2.7 Score=44.60 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=39.4
Q ss_pred EEEecccccccCCHHHHHhhcCC----CCC-----CCCceeecCC--CCCCHHHHH-HHHHHhhcCccccc
Q 006846 38 RYLLHKFPLLSKCLRLQRLCSES----PES-----SQHQIVQLPD--FPGGIDAFE-LCAKFCYGITITLS 96 (629)
Q Consensus 38 ~F~lHK~vLas~S~YFr~Lft~~----~~~-----~~~~~V~L~d--~pGGaeaFe-ll~~FcYg~~i~it 96 (629)
++.+||.+.+++|++||.|+... .+. .....|.+.. || .+|. +++.|.||-++.++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~P---kafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFP---KAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcc---hhhhhhhhhhheecccchh
Confidence 57899999999999999997532 111 1124677763 54 5665 45788899888764
No 25
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=74.72 E-value=5.6 Score=34.06 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=27.8
Q ss_pred ccchhhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhh
Q 006846 94 TLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 94 ~it~~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
.++...+..|+.||.||+|.. |+..|+.++...+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i 43 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKG------LLDLCCKYIANMI 43 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHh
Confidence 447789999999999999995 8899999998877
No 26
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=68.56 E-value=20 Score=34.39 Aligned_cols=90 Identities=11% Similarity=0.167 Sum_probs=65.7
Q ss_pred EEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCcc-------------------
Q 006846 33 QVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITI------------------- 93 (629)
Q Consensus 33 ~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i------------------- 93 (629)
-.+|+.|.+.+. .|-+|-.++.|+....+.+- .+.++.+ .+..|..+.+||---+=
T Consensus 8 s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~--p~p~pnV--rSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~ 82 (158)
T COG5201 8 SIDGEIFRVDEN-IAERSILIKNMLCDSTACNY--PIPAPNV--RSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDF 82 (158)
T ss_pred ecCCcEEEehHH-HHHHHHHHHHHhccccccCC--CCcccch--hHHHHHHHHHHHHhccccCCCccChHhhhccCCccH
Confidence 468889999876 68889999999877655433 2445556 36899999999963211
Q ss_pred ------ccchhhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhh
Q 006846 94 ------TLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 94 ------~it~~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v 133 (629)
.+...-...+.-||.||++.. |++.||.-..+.+
T Consensus 83 wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 83 WDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred HHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 123344667788999999986 7889998888877
No 27
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=60.13 E-value=11 Score=41.99 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=59.1
Q ss_pred EEEEEcCEEEEecccccccCCHHHHHhhcCC-CCCCCCce---eecCCCCCCHHHHHHHHHHhhcCccccchhhHHHHHH
Q 006846 30 LIIQVKGTRYLLHKFPLLSKCLRLQRLCSES-PESSQHQI---VQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARC 105 (629)
Q Consensus 30 V~I~V~g~~F~lHK~vLas~S~YFr~Lft~~-~~~~~~~~---V~L~d~pGGaeaFell~~FcYg~~i~it~~NV~~L~c 105 (629)
|.+-+.+ .+++|..++. ++.||+.||++. .+++.+.+ ..|+.+. ....|++++|.|+-+-+|-+.-...++-
T Consensus 295 iql~~~~-RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll 370 (516)
T KOG0511|consen 295 IQLPEED-RYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDIIFDVASDVLL 370 (516)
T ss_pred ccccccc-cccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccchHHHHhhHHH
Confidence 4444433 4999998764 688999999986 33221122 2334442 4788999999999999999998889998
Q ss_pred hHhhcCcchh
Q 006846 106 AAEYLQMTED 115 (629)
Q Consensus 106 AA~~LqMte~ 115 (629)
-|..|-+..+
T Consensus 371 ~ad~lal~~d 380 (516)
T KOG0511|consen 371 FADKLALADD 380 (516)
T ss_pred HhhHhhhhhh
Confidence 8988877754
No 28
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=55.43 E-value=42 Score=35.15 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=62.6
Q ss_pred eEEEEEcCEEEEecccccccC--CHHHHHhhcCCC---CCCCCceeecCCCCCCHHHHHHHHHHhhcCcc-ccchhhHHH
Q 006846 29 DLIIQVKGTRYLLHKFPLLSK--CLRLQRLCSESP---ESSQHQIVQLPDFPGGIDAFELCAKFCYGITI-TLSAYNIVA 102 (629)
Q Consensus 29 DV~I~V~g~~F~lHK~vLas~--S~YFr~Lft~~~---~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i-~it~~NV~~ 102 (629)
=|.+.+||+.|.-...-|.-+ =.-+-+||.... +++.+.-+-|.- .|.-||-|+.|.-.|.| ..+.-|+..
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDR---sp~yFepIlNyLr~Gq~~~~s~i~~lg 86 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDR---SPKYFEPILNYLRDGQIPSLSDIDCLG 86 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEcc---CchhhHHHHHHHhcCceeecCCccHHH
Confidence 366889999999888877777 346889998742 222223444443 35899999999998876 467789999
Q ss_pred HHHhHhhcCcch
Q 006846 103 ARCAAEYLQMTE 114 (629)
Q Consensus 103 L~cAA~~LqMte 114 (629)
++.+|.|+|+-.
T Consensus 87 vLeeArff~i~s 98 (302)
T KOG1665|consen 87 VLEEARFFQILS 98 (302)
T ss_pred HHHHhhHHhhHh
Confidence 999999999984
No 29
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=52.02 E-value=8.1 Score=34.53 Aligned_cols=42 Identities=29% Similarity=0.536 Sum_probs=33.4
Q ss_pred cCCCCcccccchhHHHHHHHHhCCCCcHHHHhhhhcccccCCC
Q 006846 444 VPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKL 486 (629)
Q Consensus 444 lPd~aR~~hDgLYRAIDiYLK~Hp~ls~~Er~~lCr~ldc~KL 486 (629)
+|++..-....||+|+..||.+....+. .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4555557788999999999999987775 88888888777664
No 30
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.08 E-value=21 Score=37.23 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=64.3
Q ss_pred CEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhhHH---HHHHhHhhcCc
Q 006846 36 GTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIV---AARCAAEYLQM 112 (629)
Q Consensus 36 g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~NV~---~L~cAA~~LqM 112 (629)
+..+..|+.+++++|.-|+.|+.....+.....+.+.+.. ++.|+.+..|.|...-.-+..++. .+.++|...+-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 4559999999999999999998865332222345666653 688999999999865444455554 66666666665
Q ss_pred chhhccccHHHHHHHHHHHhh
Q 006846 113 TEDVEKGNLIYKIEVFFNSCI 133 (629)
Q Consensus 113 te~~~~gNLi~~ce~FL~~~v 133 (629)
. .|...|...|.+.+
T Consensus 187 ~------~lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 R------HLKLACMPVLLSLI 201 (297)
T ss_pred H------HHHHHHHHHHHHHH
Confidence 5 37888888888766
No 31
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=50.82 E-value=3.6 Score=45.47 Aligned_cols=90 Identities=13% Similarity=-0.013 Sum_probs=57.0
Q ss_pred ceeeeccCC--ceeEEEEE-cCEEEEecccccccCCHHHHH-hhcCCCCCCCCcee-ecCCCCCCHHHHHHHHHHhhcCc
Q 006846 18 AVRSISSEV--SSDLIIQV-KGTRYLLHKFPLLSKCLRLQR-LCSESPESSQHQIV-QLPDFPGGIDAFELCAKFCYGIT 92 (629)
Q Consensus 18 ~~~~~~~~~--lcDV~I~V-~g~~F~lHK~vLas~S~YFr~-Lft~~~~~~~~~~V-~L~d~pGGaeaFell~~FcYg~~ 92 (629)
++-++.+++ -.|++..+ +|..|-+||+.|+++|.||.. +......+ .+| .+.-+ +.+|+..++|.|-..
T Consensus 138 ~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~---heI~~~~v~---~~~f~~flk~lyl~~ 211 (516)
T KOG0511|consen 138 QSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQG---HEIEAHRVI---LSAFSPFLKQLYLNT 211 (516)
T ss_pred HHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcccc---Cchhhhhhh---HhhhhHHHHHHHHhh
Confidence 344566655 33887765 677899999999999877654 33222111 244 44455 489999999999764
Q ss_pred cccchhhHHHHHHhHhhcCcc
Q 006846 93 ITLSAYNIVAARCAAEYLQMT 113 (629)
Q Consensus 93 i~it~~NV~~L~cAA~~LqMt 113 (629)
-.+-+.--.+|+.-..-++..
T Consensus 212 na~~~~qynallsi~~kF~~e 232 (516)
T KOG0511|consen 212 NAEWKDQYNALLSIEVKFSKE 232 (516)
T ss_pred hhhhhhHHHHHHhhhhhccHH
Confidence 334344445566666555554
No 32
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=42.47 E-value=1.1e+02 Score=35.02 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=53.4
Q ss_pred CceeEEEEEcCEEEEecccccccC-CHHHHHhhcCCC-----------CCCCCceeecCCCCCCHHHHHHHHHHhhcCcc
Q 006846 26 VSSDLIIQVKGTRYLLHKFPLLSK-CLRLQRLCSESP-----------ESSQHQIVQLPDFPGGIDAFELCAKFCYGITI 93 (629)
Q Consensus 26 ~lcDV~I~V~g~~F~lHK~vLas~-S~YFr~Lft~~~-----------~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i 93 (629)
...-|.|.|||..+.+-+..|... =.++.++..... .+. .++.-++- .|.+|..+++|-+||++
T Consensus 29 ~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~-~~EyfFDR---~P~~F~~Vl~fYrtGkL 104 (477)
T KOG3713|consen 29 LDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPV-TNEYFFDR---HPGAFAYVLNFYRTGKL 104 (477)
T ss_pred cCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcc-cCeeeecc---ChHHHHHHHHHHhcCee
Confidence 345688999999999988877662 234444444221 111 24555544 35799999999999999
Q ss_pred ccchhhHHHHH--HhHhhcCcch
Q 006846 94 TLSAYNIVAAR--CAAEYLQMTE 114 (629)
Q Consensus 94 ~it~~NV~~L~--cAA~~LqMte 114 (629)
..- .+|..+. .=-+|=++.+
T Consensus 105 H~p-~~vC~~~F~eEL~yWgI~~ 126 (477)
T KOG3713|consen 105 HVP-ADVCPLSFEEELDYWGIDE 126 (477)
T ss_pred ccc-cccchHHHHHHHHHhCCCh
Confidence 873 4444433 2335666665
No 33
>PHA00617 ribbon-helix-helix domain containing protein
Probab=29.65 E-value=63 Score=28.45 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=33.8
Q ss_pred hccChhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHh
Q 006846 215 AELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRW 251 (629)
Q Consensus 215 ~~L~idlf~rVi~amk~~g~~~~~~Ig~al~~YA~r~ 251 (629)
..||-++.+++-.-.+..|...+++|-+||..|...|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 5689999999999999999988899999999998877
No 34
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=29.28 E-value=2.2e+02 Score=28.79 Aligned_cols=84 Identities=19% Similarity=0.120 Sum_probs=62.5
Q ss_pred eeEEEEEcCEEEEecccccccCC-HHHHHhhcCCCC----CCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhhHHH
Q 006846 28 SDLIIQVKGTRYLLHKFPLLSKC-LRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVA 102 (629)
Q Consensus 28 cDV~I~V~g~~F~lHK~vLas~S-~YFr~Lft~~~~----~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~NV~~ 102 (629)
.=|.+.|||..|.--|.-|.--+ .++.+++...+. .+. .---|-|= .|.-|.-+++|.--|++-++.--=..
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDe-tGAYlIDR--DP~~FgpvLNylRhgklvl~~l~eeG 97 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDE-TGAYLIDR--DPFYFGPVLNYLRHGKLVLNKLSEEG 97 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccc-cCceEecc--CcchHHHHHHHHhcchhhhhhhhhhc
Confidence 34567899999999999998887 666677665422 111 22233222 36899999999999999999877778
Q ss_pred HHHhHhhcCcch
Q 006846 103 ARCAAEYLQMTE 114 (629)
Q Consensus 103 L~cAA~~LqMte 114 (629)
++.-|+|...+.
T Consensus 98 vL~EAefyn~~~ 109 (210)
T KOG2715|consen 98 VLEEAEFYNDPS 109 (210)
T ss_pred cchhhhccCChH
Confidence 888999998885
No 35
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=28.02 E-value=40 Score=27.92 Aligned_cols=19 Identities=26% Similarity=0.716 Sum_probs=16.5
Q ss_pred cchhHHHHHHHHhCCCCcH
Q 006846 453 DDLYRAIDIYLKAHPDLNK 471 (629)
Q Consensus 453 DgLYRAIDiYLK~Hp~ls~ 471 (629)
-.||.|+..||+.||+-..
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 3599999999999998765
No 36
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=23.79 E-value=59 Score=33.49 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=25.7
Q ss_pred HHhcC--CCCcccccchhHHHHHHHHhCCCCcHHHH
Q 006846 441 AESVP--EFSRLDHDDLYRAIDIYLKAHPDLNKCER 474 (629)
Q Consensus 441 Ae~lP--d~aR~~hDgLYRAIDiYLK~Hp~ls~~Er 474 (629)
.+-+| +..+..-+|=|+||.-|||.||+==|.++
T Consensus 183 v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~ 218 (237)
T COG3510 183 VNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDT 218 (237)
T ss_pred ccCCCCcccchhcCCChHHHHHHHHHhCCcccccch
Confidence 45666 55555689999999999999996444443
No 37
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=22.96 E-value=50 Score=28.92 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=14.2
Q ss_pred cchhHHHHHHHHhCCC
Q 006846 453 DDLYRAIDIYLKAHPD 468 (629)
Q Consensus 453 DgLYRAIDiYLK~Hp~ 468 (629)
-.||-||+.||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999974
No 38
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=22.22 E-value=1e+02 Score=35.27 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=45.5
Q ss_pred hHHHHHhhHHHhhhhhccCC----------------CCChhhHHHHHHhcCCCCc----ccc-cc---------hhHHHH
Q 006846 411 SKLKVAKLVDGYLQEIAKDV----------------NLPLSKFITIAESVPEFSR----LDH-DD---------LYRAID 460 (629)
Q Consensus 411 ~l~~VakLvD~YLaEIA~D~----------------nL~~sKF~~LAe~lPd~aR----~~h-Dg---------LYRAID 460 (629)
....|.+.|-.+|.+++.+| +|++-.|..|+|-.-++.+ .+. |. +|||+|
T Consensus 344 D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavd 423 (523)
T KOG2016|consen 344 DALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVD 423 (523)
T ss_pred hHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHHH
Confidence 46789999999999999883 4666667778876654444 333 33 699999
Q ss_pred HHHHhCCCCcH
Q 006846 461 IYLKAHPDLNK 471 (629)
Q Consensus 461 iYLK~Hp~ls~ 471 (629)
.||+.|-....
T Consensus 424 rfl~~~gk~pG 434 (523)
T KOG2016|consen 424 RFLKEKGKYPG 434 (523)
T ss_pred HHHHHhcCCCC
Confidence 99999877655
No 39
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=20.74 E-value=1.1e+02 Score=22.23 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=28.8
Q ss_pred ccChhHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 006846 216 ELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASR 250 (629)
Q Consensus 216 ~L~idlf~rVi~amk~~g~~~~~~Ig~al~~YA~r 250 (629)
.||-++++++=...+..|+-.+++|-.+|..|..+
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 47788899988888889987778888888888764
Done!