BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006847
(629 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 18/122 (14%)
Query: 341 FLEASRFGSTELVRILLQIAQRNSLDVDVDLALGF-----ASHYCKIGTMECLVEEG--- 392
LEA+R G + VRIL+ N DV+ +G+ A+++ + +E L++ G
Sbjct: 18 LLEAARAGQDDEVRILMA----NGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 393 NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSSQVEVAAYLL 446
NA LG PL AA+RG ++VV+ +K G D + L A + +E+ LL
Sbjct: 74 NADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
Query: 447 PH 448
H
Sbjct: 134 KH 135
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 333 GADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVD--VDLALGFASHYCKIGTMECLVE 390
G ++ LEA++ G E V+ L + N D++ L FA+ Y ++ +E L++
Sbjct: 6 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 391 EGNAV-----AFLGPLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEV 441
G V L PL A G +V + VK G D+ L A + + E+
Sbjct: 66 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 125
Query: 442 AAYLLPH 448
LL H
Sbjct: 126 CKLLLQH 132
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 333 GADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVD--VDLALGFASHYCKIGTMECLVE 390
G ++ LEA++ G E V+ L + N D++ L FA+ Y ++ +E L++
Sbjct: 8 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 391 EGNAV-----AFLGPLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEV 441
G V L PL A G +V + VK G D+ L A + + E+
Sbjct: 68 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 127
Query: 442 AAYLLPH 448
LL H
Sbjct: 128 CKLLLQH 134
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 333 GADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVD--VDLALGFASHYCKIGTMECLVE 390
G ++ LEA++ G E V+ L + N D++ L FA+ Y ++ +E L++
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 391 EGNAV-----AFLGPLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEV 441
G V L PL A G +V + VK G D+ L A + + E+
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Query: 442 AAYLLPH 448
LL H
Sbjct: 124 CKLLLQH 130
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 344 ASRFGSTELVRILLQIAQRNSLDVDVDLALG-----FASHYCKIGTMECLVEEG---NAV 395
A+ FG E+V +LL +N DV+ +LG A+ + +E L++ G NA
Sbjct: 54 AAHFGHLEIVEVLL----KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS 109
Query: 396 AFLG--PLMRAAERGCMQVVQWFVKRGC 421
G PL AA+RG +++V+ +K G
Sbjct: 110 DSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 147 CITLDSIWFLRTQQELHGVTGLIK--KIIAN--GAYDFT 181
C ++ +W+ QQE +G+TG++K K+I N G YD+
Sbjct: 255 CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV 293
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 147 CITLDSIWFLRTQQELHGVTGLIK--KIIAN--GAYDFT 181
C ++ +W+ QQE +G+TG++K K+I N G YD+
Sbjct: 255 CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV 293
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 147 CITLDSIWFLRTQQELHGVTGLIK--KIIAN--GAYDFT 181
C ++ +W+ QQE +G+TG++K K+I N G YD+
Sbjct: 255 CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV 293
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 147 CITLDSIWFLRTQQELHGVTGLIK--KIIAN--GAYDFT 181
C ++ +W+ QQE +G+TG++K K+I N G YD+
Sbjct: 255 CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV 293
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 147 CITLDSIWFLRTQQELHGVTGLIK--KIIAN--GAYDFT 181
C ++ +W+ QQE +G+TG++K K+I N G YD+
Sbjct: 255 CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV 293
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 147 CITLDSIWFLRTQQELHGVTGLIK--KIIAN--GAYDFT 181
C ++ +W+ QQE +G+TG++K K+I N G YD+
Sbjct: 255 CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV 293
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 147 CITLDSIWFLRTQQELHGVTGLIK--KIIAN--GAYDFT 181
C ++ +W+ QQE +G+TG++K K+I N G YD+
Sbjct: 255 CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV 293
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAV----AF- 397
A+ G E+V +LL+ A N+ D D L A+ + +E L++ G V A+
Sbjct: 54 AAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYG 113
Query: 398 LGPLMRAAERGCMQVVQWFVKRG 420
L PL AA+RG +++V+ +K G
Sbjct: 114 LTPLHLAADRGHLEIVEVLLKHG 136
>pdb|3IV3|A Chain A, The Structure Of A Putative Tagatose 1,6-Aldolase From
Streptococcus Mutans
Length = 332
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 458 SIEILKAAGERSGGSLDGVAFLLHSDFLGDPAATYAVADSIARSDDEGVAPDLKVFL 514
SI+ LK AG D V FLL+ D GDP I R E A D+ FL
Sbjct: 115 SIKRLKEAG------ADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAEDIPFFL 165
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 150 LDSIWFLRTQQELHGVTGLIK--KIIAN--GAYDFT 181
++ +W+ QQE +G+TG++K K+I N G YD+
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV 293
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 150 LDSIWFLRTQQELHGVTGLIK--KIIAN--GAYDFT 181
++ +W+ QQE +G+TG++K K+I N G YD+
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV 293
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 400 PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLL 446
PLM AAE ++ V++ +K G +D + L A EV YLL
Sbjct: 47 PLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 150 LDSIWFLRTQQELHGVTGLIK--KIIAN--GAYDFT 181
++ +W+ QQE +G+TG++K K+I N G YD+
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV 293
>pdb|2KSN|A Chain A, Solution Structure Of The N-Terminal Domain Of Dc-UbpUBTD2
Length = 137
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 49 SEGSEGSNVVFSREAPLISKESRISSGCSCSAKNLKSRRIIATDSDFATEKIGHEKKLSK 108
+E SEG+ V R PL ++ + S + L+S+R D+ A E +
Sbjct: 4 NENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFE--------GR 55
Query: 109 SERVELGKMFQSAMSSHDWELAESLI 134
E + K A S+D ELA+++I
Sbjct: 56 KEIWDALKAAAHAFESNDHELAQAII 81
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 147 CITLDSIWFLRTQQELHGVTGLIK--KIIAN--GAYDFT 181
C ++ +W+ QQE G+ G++K K+I N G YD+
Sbjct: 254 CDPVNRLWYCDLQQESSGIAGILKWVKLIDNFEGEYDYV 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,663,676
Number of Sequences: 62578
Number of extensions: 686921
Number of successful extensions: 1409
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1407
Number of HSP's gapped (non-prelim): 21
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)