Query 006848
Match_columns 629
No_of_seqs 328 out of 1681
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 15:21:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00079 NADP-specific glutama 100.0 2E-135 3E-140 1099.6 50.6 437 189-629 10-454 (454)
2 PRK14030 glutamate dehydrogena 100.0 2E-130 4E-135 1060.7 49.2 431 193-629 3-445 (445)
3 PRK14031 glutamate dehydrogena 100.0 3E-128 7E-133 1043.8 49.2 430 193-629 3-444 (444)
4 COG0334 GdhA Glutamate dehydro 100.0 3E-125 6E-130 1003.2 42.5 406 207-629 1-411 (411)
5 PRK09414 glutamate dehydrogena 100.0 1E-121 3E-126 994.5 48.6 428 192-629 6-445 (445)
6 PLN02477 glutamate dehydrogena 100.0 6E-119 1E-123 966.0 46.3 404 209-628 2-409 (410)
7 KOG2250 Glutamate/leucine/phen 100.0 9E-113 2E-117 912.6 37.4 456 157-628 1-483 (514)
8 PTZ00324 glutamate dehydrogena 100.0 1.3E-69 2.7E-74 623.7 35.8 360 233-616 464-911 (1002)
9 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 6.9E-69 1.5E-73 546.6 26.6 246 379-628 1-254 (254)
10 PF00208 ELFV_dehydrog: Glutam 100.0 4.2E-59 9.2E-64 473.0 14.9 233 386-627 1-244 (244)
11 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 2E-55 4.3E-60 441.8 23.3 223 386-621 1-227 (227)
12 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 3.9E-55 8.5E-60 437.1 22.7 213 394-620 1-217 (217)
13 PF02812 ELFV_dehydrog_N: Glu/ 100.0 2.4E-45 5.3E-50 341.1 12.8 131 241-371 1-131 (131)
14 cd01075 NAD_bind_Leu_Phe_Val_D 100.0 1.3E-38 2.8E-43 314.0 21.1 191 392-620 2-199 (200)
15 smart00839 ELFV_dehydrog Gluta 99.9 1.3E-25 2.8E-30 200.7 8.8 96 499-597 3-102 (102)
16 COG2902 NAD-specific glutamate 99.6 1.6E-13 3.5E-18 162.1 27.1 286 261-561 785-1159(1592)
17 PRK08374 homoserine dehydrogen 99.2 6.8E-11 1.5E-15 126.0 13.1 172 417-603 3-209 (336)
18 PRK06392 homoserine dehydrogen 99.2 2E-10 4.3E-15 122.2 13.0 176 417-604 1-204 (326)
19 PF05088 Bac_GDH: Bacterial NA 99.2 2.1E-09 4.5E-14 131.9 22.2 348 261-628 723-1169(1528)
20 PRK06270 homoserine dehydrogen 98.7 9.3E-08 2E-12 102.2 13.1 173 417-604 3-214 (341)
21 PRK06813 homoserine dehydrogen 98.3 1.9E-06 4.1E-11 92.8 10.2 175 417-604 3-211 (346)
22 cd05191 NAD_bind_amino_acid_DH 98.3 3.3E-06 7.2E-11 72.8 9.3 55 394-448 1-55 (86)
23 PLN02700 homoserine dehydrogen 98.1 1.6E-05 3.5E-10 86.5 11.0 183 417-604 4-228 (377)
24 PRK09436 thrA bifunctional asp 98.0 3.8E-05 8.1E-10 91.2 12.3 189 402-604 451-670 (819)
25 PRK09466 metL bifunctional asp 97.7 0.00026 5.6E-09 84.0 11.8 184 403-604 445-664 (810)
26 COG0460 ThrA Homoserine dehydr 97.6 0.00041 9E-09 74.5 10.3 167 416-604 3-202 (333)
27 PF00670 AdoHcyase_NAD: S-aden 97.5 0.00048 1E-08 67.2 8.9 85 407-518 14-99 (162)
28 TIGR02853 spore_dpaA dipicolin 97.3 0.001 2.3E-08 69.9 9.6 122 392-544 130-259 (287)
29 cd01065 NAD_bind_Shikimate_DH 97.2 0.0056 1.2E-07 57.0 12.6 126 401-547 4-139 (155)
30 PRK08306 dipicolinate synthase 97.0 0.0026 5.7E-08 67.1 8.6 53 392-448 131-183 (296)
31 PTZ00317 NADP-dependent malic 96.9 0.13 2.7E-06 59.1 21.9 165 323-518 221-402 (559)
32 PLN03129 NADP-dependent malic 96.8 0.039 8.4E-07 63.4 16.5 166 322-519 243-423 (581)
33 PRK05476 S-adenosyl-L-homocyst 96.8 0.0028 6E-08 70.4 7.0 53 392-448 191-243 (425)
34 COG0281 SfcA Malic enzyme [Ene 96.7 0.01 2.2E-07 65.6 10.4 111 393-518 176-289 (432)
35 cd05311 NAD_bind_2_malic_enz N 96.6 0.026 5.6E-07 57.5 12.3 110 395-518 4-117 (226)
36 PRK13243 glyoxylate reductase; 96.4 0.022 4.8E-07 61.1 11.2 37 411-448 145-181 (333)
37 PTZ00075 Adenosylhomocysteinas 96.4 0.0088 1.9E-07 67.3 8.0 52 396-448 233-285 (476)
38 smart00597 ZnF_TTF zinc finger 96.4 0.00099 2.2E-08 59.1 0.3 65 100-167 3-72 (90)
39 cd00401 AdoHcyase S-adenosyl-L 96.4 0.0065 1.4E-07 67.3 6.6 50 395-448 184-233 (413)
40 PRK08410 2-hydroxyacid dehydro 96.4 0.024 5.1E-07 60.4 10.6 36 412-448 141-176 (311)
41 PRK07232 bifunctional malic en 96.1 0.039 8.4E-07 65.4 11.7 109 392-518 161-273 (752)
42 PRK06349 homoserine dehydrogen 96.1 0.037 8E-07 61.4 10.7 154 417-603 4-192 (426)
43 cd05312 NAD_bind_1_malic_enz N 96.0 0.055 1.2E-06 57.2 10.8 110 395-518 4-126 (279)
44 PRK12861 malic enzyme; Reviewe 95.9 0.1 2.2E-06 61.9 14.1 162 328-525 119-289 (764)
45 PF02826 2-Hacid_dh_C: D-isome 95.9 0.012 2.7E-07 57.2 5.3 38 410-447 30-67 (178)
46 PRK13529 malate dehydrogenase; 95.9 0.19 4.1E-06 57.8 15.3 172 322-518 218-403 (563)
47 PRK07574 formate dehydrogenase 95.8 0.068 1.5E-06 58.9 11.2 36 412-448 188-223 (385)
48 COG0499 SAM1 S-adenosylhomocys 95.8 0.027 5.9E-07 61.3 7.9 110 394-533 190-307 (420)
49 PRK12549 shikimate 5-dehydroge 95.8 0.075 1.6E-06 55.9 10.9 50 395-448 110-159 (284)
50 PRK15438 erythronate-4-phospha 95.7 0.02 4.3E-07 62.8 6.5 47 401-448 101-147 (378)
51 TIGR00936 ahcY adenosylhomocys 95.7 0.02 4.2E-07 63.5 6.4 51 394-448 176-226 (406)
52 PF03447 NAD_binding_3: Homose 95.6 0.01 2.2E-07 53.5 3.4 33 423-456 1-37 (117)
53 COG0111 SerA Phosphoglycerate 95.6 0.045 9.8E-07 58.9 8.5 130 411-548 137-284 (324)
54 PLN03139 formate dehydrogenase 95.5 0.095 2.1E-06 57.8 11.0 37 411-448 194-230 (386)
55 PRK12862 malic enzyme; Reviewe 95.5 0.06 1.3E-06 64.0 10.0 139 348-518 139-281 (763)
56 PRK09599 6-phosphogluconate de 95.4 0.041 8.9E-07 57.8 7.4 111 417-555 1-125 (301)
57 cd00762 NAD_bind_malic_enz NAD 95.4 0.065 1.4E-06 56.0 8.7 111 395-518 4-127 (254)
58 PRK00257 erythronate-4-phospha 95.4 0.03 6.4E-07 61.5 6.5 45 403-448 103-147 (381)
59 PRK14175 bifunctional 5,10-met 95.3 0.039 8.4E-07 58.5 7.0 52 392-448 138-190 (286)
60 PF10727 Rossmann-like: Rossma 95.3 0.013 2.9E-07 54.9 3.1 74 416-513 10-83 (127)
61 PF01488 Shikimate_DH: Shikima 95.3 0.068 1.5E-06 49.9 7.8 37 412-448 8-44 (135)
62 cd01078 NAD_bind_H4MPT_DH NADP 95.3 0.054 1.2E-06 53.0 7.4 54 394-448 6-60 (194)
63 PRK14192 bifunctional 5,10-met 95.3 0.047 1E-06 57.7 7.3 51 393-448 140-191 (283)
64 COG5322 Predicted dehydrogenas 95.3 0.086 1.9E-06 55.7 9.0 52 394-445 145-197 (351)
65 COG0373 HemA Glutamyl-tRNA red 95.2 0.098 2.1E-06 58.1 9.9 98 397-518 159-260 (414)
66 PRK09310 aroDE bifunctional 3- 95.2 0.21 4.5E-06 56.4 12.7 149 395-585 315-468 (477)
67 smart00846 Gp_dh_N Glyceraldeh 95.2 0.12 2.6E-06 49.6 9.1 99 417-525 1-113 (149)
68 cd01080 NAD_bind_m-THF_DH_Cycl 94.9 0.072 1.6E-06 52.2 7.1 55 389-448 21-76 (168)
69 PF03949 Malic_M: Malic enzyme 94.9 0.039 8.4E-07 57.7 5.4 110 395-518 4-127 (255)
70 PF02882 THF_DHG_CYH_C: Tetrah 94.8 0.079 1.7E-06 51.7 7.0 53 391-448 15-68 (160)
71 PF13241 NAD_binding_7: Putati 94.8 0.028 6E-07 50.2 3.4 36 413-448 4-39 (103)
72 PRK00048 dihydrodipicolinate r 94.7 0.13 2.7E-06 53.3 8.6 105 417-548 2-118 (257)
73 COG1748 LYS9 Saccharopine dehy 94.5 0.12 2.6E-06 57.1 8.3 123 417-558 2-133 (389)
74 PRK14176 bifunctional 5,10-met 94.5 0.083 1.8E-06 56.1 6.8 52 392-448 144-196 (287)
75 PLN02494 adenosylhomocysteinas 94.5 0.066 1.4E-06 60.4 6.3 51 394-448 235-285 (477)
76 PRK14194 bifunctional 5,10-met 94.5 0.089 1.9E-06 56.2 6.9 52 392-448 139-191 (301)
77 COG0057 GapA Glyceraldehyde-3- 94.4 0.27 5.8E-06 53.2 10.3 99 417-525 2-116 (335)
78 PRK10792 bifunctional 5,10-met 94.4 0.094 2E-06 55.6 6.9 52 392-448 139-191 (285)
79 PRK13302 putative L-aspartate 94.2 0.082 1.8E-06 55.2 6.0 105 414-543 4-119 (271)
80 TIGR00507 aroE shikimate 5-deh 94.1 0.56 1.2E-05 48.6 11.8 49 395-448 100-148 (270)
81 PRK06487 glycerate dehydrogena 94.0 0.068 1.5E-06 57.1 4.9 35 412-446 144-178 (317)
82 PRK13535 erythrose 4-phosphate 94.0 0.23 5E-06 53.9 8.9 97 417-523 2-115 (336)
83 PRK13304 L-aspartate dehydroge 94.0 0.08 1.7E-06 55.0 5.2 104 417-546 2-120 (265)
84 PF02737 3HCDH_N: 3-hydroxyacy 94.0 0.087 1.9E-06 51.7 5.2 85 418-510 1-90 (180)
85 PLN02928 oxidoreductase family 94.0 0.074 1.6E-06 57.6 5.1 37 411-448 154-190 (347)
86 cd01079 NAD_bind_m-THF_DH NAD 93.9 0.17 3.6E-06 51.2 7.2 112 392-526 33-159 (197)
87 PRK06719 precorrin-2 dehydroge 93.9 0.076 1.7E-06 51.2 4.7 35 412-446 9-43 (157)
88 PRK14189 bifunctional 5,10-met 93.9 0.14 3.1E-06 54.3 7.0 52 392-448 138-190 (285)
89 COG1052 LdhA Lactate dehydroge 93.9 0.42 9.1E-06 51.6 10.6 38 410-448 140-177 (324)
90 TIGR01532 E4PD_g-proteo D-eryt 93.9 0.28 6E-06 53.0 9.3 96 418-523 1-113 (325)
91 PRK06932 glycerate dehydrogena 93.8 0.073 1.6E-06 56.8 4.7 34 412-445 143-176 (314)
92 PRK14188 bifunctional 5,10-met 93.8 0.21 4.5E-06 53.3 8.1 52 392-448 138-190 (296)
93 PF03446 NAD_binding_2: NAD bi 93.8 0.11 2.3E-06 49.8 5.4 31 417-448 2-32 (163)
94 PRK14191 bifunctional 5,10-met 93.7 0.16 3.4E-06 54.0 7.0 52 392-448 137-189 (285)
95 PF01113 DapB_N: Dihydrodipico 93.7 0.058 1.2E-06 49.8 3.3 111 417-546 1-123 (124)
96 PF00044 Gp_dh_N: Glyceraldehy 93.6 0.15 3.3E-06 49.2 6.1 99 417-524 1-113 (151)
97 PRK06718 precorrin-2 dehydroge 93.5 0.096 2.1E-06 52.5 4.7 35 412-446 6-40 (202)
98 PRK06436 glycerate dehydrogena 93.5 0.11 2.3E-06 55.5 5.2 34 413-446 119-152 (303)
99 cd05212 NAD_bind_m-THF_DH_Cycl 93.4 0.29 6.3E-06 46.7 7.6 51 393-448 9-60 (140)
100 PRK14177 bifunctional 5,10-met 93.3 0.27 5.8E-06 52.3 7.8 52 392-448 139-191 (284)
101 PRK14179 bifunctional 5,10-met 93.2 0.26 5.6E-06 52.4 7.5 52 392-448 138-190 (284)
102 TIGR01470 cysG_Nterm siroheme 93.2 0.12 2.5E-06 52.1 4.7 35 413-447 6-40 (205)
103 PRK15469 ghrA bifunctional gly 93.1 0.14 3.1E-06 54.7 5.4 35 412-446 132-166 (312)
104 PRK15425 gapA glyceraldehyde-3 93.0 0.48 1E-05 51.4 9.3 97 417-523 3-113 (331)
105 PRK11790 D-3-phosphoglycerate 93.0 0.13 2.9E-06 56.9 5.2 35 412-446 147-181 (409)
106 TIGR01921 DAP-DH diaminopimela 92.9 0.24 5.1E-06 53.6 6.8 84 416-526 3-87 (324)
107 PF00070 Pyr_redox: Pyridine n 92.7 0.49 1.1E-05 39.8 7.2 49 418-469 1-49 (80)
108 PLN03096 glyceraldehyde-3-phos 92.7 0.5 1.1E-05 52.4 9.1 97 417-523 61-174 (395)
109 PRK14187 bifunctional 5,10-met 92.7 0.3 6.4E-06 52.2 7.1 52 392-448 140-192 (294)
110 PRK12480 D-lactate dehydrogena 92.6 0.17 3.7E-06 54.4 5.3 35 412-446 142-176 (330)
111 PRK00676 hemA glutamyl-tRNA re 92.6 0.3 6.5E-06 53.1 7.1 51 399-450 158-208 (338)
112 PLN02272 glyceraldehyde-3-phos 92.5 0.59 1.3E-05 52.2 9.4 99 417-524 86-199 (421)
113 PRK15409 bifunctional glyoxyla 92.5 0.16 3.5E-06 54.5 4.9 37 411-448 140-177 (323)
114 PLN02358 glyceraldehyde-3-phos 92.3 0.57 1.2E-05 50.9 8.9 99 417-524 6-120 (338)
115 PLN02516 methylenetetrahydrofo 92.2 0.37 8.1E-06 51.5 7.1 52 392-448 147-199 (299)
116 PRK13581 D-3-phosphoglycerate 92.2 0.29 6.3E-06 55.8 6.8 35 411-445 135-169 (526)
117 TIGR01809 Shik-DH-AROM shikima 92.1 1.5 3.2E-05 46.1 11.4 49 396-448 107-157 (282)
118 PLN02306 hydroxypyruvate reduc 92.1 0.19 4.1E-06 55.4 5.0 35 411-445 160-195 (386)
119 TIGR01534 GAPDH-I glyceraldehy 91.9 0.64 1.4E-05 50.3 8.6 96 418-523 1-114 (327)
120 TIGR02356 adenyl_thiF thiazole 91.9 0.22 4.8E-06 49.7 4.8 37 413-449 18-54 (202)
121 PRK14190 bifunctional 5,10-met 91.9 0.37 8E-06 51.2 6.6 52 392-448 138-190 (284)
122 PRK14166 bifunctional 5,10-met 91.9 0.44 9.5E-06 50.6 7.2 52 392-448 137-189 (282)
123 PRK14173 bifunctional 5,10-met 91.8 0.56 1.2E-05 50.0 7.9 52 392-448 135-187 (287)
124 PRK13301 putative L-aspartate 91.7 0.39 8.5E-06 50.6 6.5 84 417-527 3-90 (267)
125 PRK14172 bifunctional 5,10-met 91.7 0.41 8.9E-06 50.7 6.7 52 392-448 138-190 (278)
126 PRK14618 NAD(P)H-dependent gly 91.6 4.7 0.0001 42.8 14.6 32 416-448 4-35 (328)
127 PLN02616 tetrahydrofolate dehy 91.5 0.53 1.1E-05 51.6 7.5 52 392-448 211-263 (364)
128 PRK14183 bifunctional 5,10-met 91.5 0.44 9.5E-06 50.6 6.7 52 392-448 137-189 (281)
129 COG0569 TrkA K+ transport syst 91.5 0.98 2.1E-05 46.0 9.0 110 417-549 1-124 (225)
130 cd05213 NAD_bind_Glutamyl_tRNA 91.4 0.57 1.2E-05 49.8 7.6 45 403-448 166-210 (311)
131 PF01262 AlaDh_PNT_C: Alanine 91.4 0.29 6.4E-06 47.2 4.9 34 413-446 17-50 (168)
132 PRK14169 bifunctional 5,10-met 91.3 0.53 1.1E-05 50.0 7.1 53 391-448 135-188 (282)
133 PRK14170 bifunctional 5,10-met 91.3 0.47 1E-05 50.5 6.7 52 392-448 137-189 (284)
134 PRK14193 bifunctional 5,10-met 91.2 0.64 1.4E-05 49.4 7.6 52 392-448 138-192 (284)
135 COG0190 FolD 5,10-methylene-te 91.2 0.45 9.7E-06 50.5 6.3 52 392-448 136-188 (283)
136 PRK13940 glutamyl-tRNA reducta 91.1 0.41 8.9E-06 53.3 6.3 50 399-448 164-213 (414)
137 PRK14982 acyl-ACP reductase; P 91.1 0.55 1.2E-05 51.1 7.1 55 394-448 133-189 (340)
138 PRK15057 UDP-glucose 6-dehydro 91.0 2.3 4.9E-05 46.9 11.9 30 417-448 1-30 (388)
139 PRK14171 bifunctional 5,10-met 91.0 0.53 1.1E-05 50.2 6.8 52 392-448 139-191 (288)
140 PRK14180 bifunctional 5,10-met 91.0 0.53 1.1E-05 50.0 6.7 52 392-448 138-190 (282)
141 PRK08955 glyceraldehyde-3-phos 91.0 1.4 3E-05 48.0 9.9 97 417-523 3-112 (334)
142 PRK14186 bifunctional 5,10-met 90.9 0.6 1.3E-05 49.9 7.1 52 392-448 138-190 (297)
143 PRK08289 glyceraldehyde-3-phos 90.9 3.7 8.1E-05 46.6 13.4 141 352-521 83-248 (477)
144 TIGR00872 gnd_rel 6-phosphoglu 90.8 0.63 1.4E-05 49.0 7.1 103 417-545 1-116 (298)
145 TIGR01327 PGDH D-3-phosphoglyc 90.8 0.32 7E-06 55.5 5.2 35 411-445 133-167 (525)
146 KOG0069 Glyoxylate/hydroxypyru 90.6 0.58 1.3E-05 50.9 6.7 38 410-448 156-193 (336)
147 PRK07403 glyceraldehyde-3-phos 90.6 1.2 2.6E-05 48.5 9.0 97 417-523 2-114 (337)
148 PRK00258 aroE shikimate 5-dehy 90.6 0.65 1.4E-05 48.5 6.9 51 395-448 105-155 (278)
149 PRK14178 bifunctional 5,10-met 90.6 0.52 1.1E-05 50.0 6.2 52 392-448 132-184 (279)
150 COG1648 CysG Siroheme synthase 90.4 0.39 8.5E-06 48.8 4.9 37 412-448 8-44 (210)
151 PLN02819 lysine-ketoglutarate 90.3 0.79 1.7E-05 56.5 8.2 110 414-547 567-703 (1042)
152 KOG1370 S-adenosylhomocysteine 90.1 0.6 1.3E-05 50.3 6.1 121 413-560 211-358 (434)
153 PRK15461 NADH-dependent gamma- 90.0 0.49 1.1E-05 49.8 5.4 31 417-448 2-32 (296)
154 PRK14182 bifunctional 5,10-met 89.9 0.85 1.8E-05 48.5 7.1 52 392-448 137-189 (282)
155 PTZ00023 glyceraldehyde-3-phos 89.8 1.3 2.7E-05 48.3 8.5 98 417-523 3-114 (337)
156 PRK07729 glyceraldehyde-3-phos 89.8 1.6 3.4E-05 47.7 9.2 97 417-523 3-113 (343)
157 PRK13303 L-aspartate dehydroge 89.8 0.88 1.9E-05 47.4 7.0 86 417-527 2-89 (265)
158 PRK08300 acetaldehyde dehydrog 89.7 0.62 1.3E-05 50.0 5.9 140 415-577 3-171 (302)
159 TIGR01035 hemA glutamyl-tRNA r 89.5 1.1 2.4E-05 49.8 7.9 37 412-448 176-212 (417)
160 PRK12490 6-phosphogluconate de 89.5 0.97 2.1E-05 47.6 7.2 30 418-448 2-31 (299)
161 PRK13403 ketol-acid reductoiso 89.3 0.49 1.1E-05 51.4 4.8 36 412-447 12-47 (335)
162 PF03807 F420_oxidored: NADP o 89.2 0.61 1.3E-05 40.1 4.6 70 418-512 1-75 (96)
163 PRK08605 D-lactate dehydrogena 89.1 0.47 1E-05 51.0 4.6 35 411-445 141-176 (332)
164 PTZ00142 6-phosphogluconate de 89.0 0.78 1.7E-05 51.9 6.4 108 417-544 2-123 (470)
165 PRK14167 bifunctional 5,10-met 88.6 1.1 2.3E-05 48.1 6.8 52 392-448 137-193 (297)
166 TIGR01505 tartro_sem_red 2-hyd 88.6 0.78 1.7E-05 47.8 5.7 30 418-448 1-30 (291)
167 PRK12548 shikimate 5-dehydroge 88.6 1.1 2.5E-05 47.1 7.0 49 396-448 110-158 (289)
168 PRK06141 ornithine cyclodeamin 88.6 2.2 4.8E-05 45.5 9.2 113 414-546 123-242 (314)
169 PF01408 GFO_IDH_MocA: Oxidore 88.5 0.4 8.6E-06 42.6 3.0 103 417-544 1-117 (120)
170 PRK07531 bifunctional 3-hydrox 88.5 0.95 2.1E-05 51.2 6.7 31 417-448 5-35 (495)
171 PF03435 Saccharop_dh: Sacchar 88.4 0.5 1.1E-05 51.1 4.3 109 419-547 1-122 (386)
172 PRK11579 putative oxidoreducta 88.4 1.5 3.3E-05 46.8 7.9 102 417-545 5-120 (346)
173 PLN02897 tetrahydrofolate dehy 88.4 0.95 2.1E-05 49.4 6.3 52 392-448 194-246 (345)
174 COG2084 MmsB 3-hydroxyisobutyr 88.3 1.8 4E-05 46.1 8.2 31 417-448 1-31 (286)
175 PRK00045 hemA glutamyl-tRNA re 88.3 1.1 2.3E-05 49.8 6.8 36 413-448 179-214 (423)
176 PRK14106 murD UDP-N-acetylmura 88.2 0.68 1.5E-05 50.9 5.2 35 413-448 2-36 (450)
177 PRK02472 murD UDP-N-acetylmura 88.2 0.69 1.5E-05 50.8 5.3 35 413-448 2-36 (447)
178 PRK14181 bifunctional 5,10-met 87.9 1.4 2.9E-05 47.1 7.0 52 392-448 133-189 (287)
179 PLN02237 glyceraldehyde-3-phos 87.9 2.1 4.6E-05 48.1 8.8 97 417-523 76-189 (442)
180 PRK03659 glutathione-regulated 87.8 4.1 8.9E-05 47.4 11.4 144 417-590 401-556 (601)
181 KOG1257 NADP+-dependent malic 87.8 10 0.00022 43.7 13.9 162 325-518 235-410 (582)
182 PRK07680 late competence prote 87.7 1.1 2.4E-05 46.3 6.2 31 418-448 2-35 (273)
183 PRK08762 molybdopterin biosynt 87.7 1.1 2.4E-05 48.8 6.4 37 413-449 132-168 (376)
184 PRK12475 thiamine/molybdopteri 87.6 0.69 1.5E-05 50.1 4.7 37 413-449 21-57 (338)
185 PTZ00434 cytosolic glyceraldeh 87.6 1.2 2.5E-05 49.0 6.4 100 417-525 4-130 (361)
186 PRK14174 bifunctional 5,10-met 87.5 1.4 3.1E-05 47.1 6.9 52 392-448 139-195 (295)
187 PF01118 Semialdhyde_dh: Semia 87.5 1.3 2.8E-05 40.4 5.8 40 418-462 1-43 (121)
188 PRK07530 3-hydroxybutyryl-CoA 87.4 1.1 2.3E-05 46.8 5.8 31 417-448 5-35 (292)
189 PRK05600 thiamine biosynthesis 87.4 1.2 2.5E-05 49.0 6.3 37 413-449 38-74 (370)
190 PRK01438 murD UDP-N-acetylmura 87.4 0.9 1.9E-05 50.6 5.6 39 409-448 9-47 (480)
191 PRK12749 quinate/shikimate deh 87.3 1.5 3.3E-05 46.4 7.0 49 396-448 108-156 (288)
192 PRK14168 bifunctional 5,10-met 87.2 1.3 2.8E-05 47.5 6.3 52 392-448 141-197 (297)
193 PRK14184 bifunctional 5,10-met 87.2 1.2 2.7E-05 47.4 6.1 52 392-448 137-193 (286)
194 PF00899 ThiF: ThiF family; I 87.2 0.59 1.3E-05 43.2 3.4 33 416-448 2-34 (135)
195 PF07991 IlvN: Acetohydroxy ac 87.1 0.82 1.8E-05 45.1 4.4 36 414-450 2-37 (165)
196 PRK05717 oxidoreductase; Valid 87.0 1 2.3E-05 45.0 5.3 37 411-448 5-42 (255)
197 PRK12826 3-ketoacyl-(acyl-carr 86.9 1.1 2.3E-05 44.2 5.3 35 413-447 3-38 (251)
198 PRK14027 quinate/shikimate deh 86.9 1.7 3.6E-05 46.1 6.9 50 395-448 110-159 (283)
199 PRK05472 redox-sensing transcr 86.8 1.2 2.7E-05 44.6 5.7 52 396-448 65-118 (213)
200 TIGR00465 ilvC ketol-acid redu 86.8 0.92 2E-05 48.7 5.0 35 414-448 1-35 (314)
201 PLN02520 bifunctional 3-dehydr 86.8 1.5 3.3E-05 50.3 7.0 54 394-448 351-410 (529)
202 KOG2380 Prephenate dehydrogena 86.7 0.78 1.7E-05 50.1 4.4 33 416-448 52-84 (480)
203 PRK08628 short chain dehydroge 86.6 1 2.3E-05 44.9 5.1 36 411-446 2-38 (258)
204 cd00757 ThiF_MoeB_HesA_family 86.6 0.88 1.9E-05 46.1 4.6 36 413-448 18-53 (228)
205 PRK04690 murD UDP-N-acetylmura 86.6 0.87 1.9E-05 51.1 4.9 35 413-448 5-39 (468)
206 PRK08268 3-hydroxy-acyl-CoA de 86.5 1.2 2.6E-05 50.7 6.1 31 417-448 8-38 (507)
207 PRK05479 ketol-acid reductoiso 86.5 0.96 2.1E-05 49.1 5.0 33 413-445 14-46 (330)
208 TIGR00518 alaDH alanine dehydr 86.4 1.8 3.9E-05 47.3 7.2 34 414-448 165-198 (370)
209 PRK04207 glyceraldehyde-3-phos 86.3 2.1 4.5E-05 46.4 7.5 32 417-448 2-34 (341)
210 PRK09260 3-hydroxybutyryl-CoA 86.3 1.3 2.7E-05 46.3 5.6 31 417-448 2-32 (288)
211 PRK15116 sulfur acceptor prote 86.3 0.87 1.9E-05 48.0 4.4 36 413-448 27-62 (268)
212 KOG0022 Alcohol dehydrogenase, 86.2 0.71 1.5E-05 50.0 3.7 52 389-448 173-225 (375)
213 TIGR01546 GAPDH-II_archae glyc 86.1 3.2 7E-05 45.2 8.8 30 419-448 1-31 (333)
214 PRK03562 glutathione-regulated 86.1 6 0.00013 46.3 11.5 136 417-581 401-547 (621)
215 PLN02545 3-hydroxybutyryl-CoA 86.0 1.3 2.9E-05 46.2 5.7 31 417-448 5-35 (295)
216 PRK05562 precorrin-2 dehydroge 85.9 1.1 2.3E-05 46.2 4.8 36 413-448 22-57 (223)
217 PRK07819 3-hydroxybutyryl-CoA 85.9 1.2 2.7E-05 46.7 5.4 37 417-459 6-42 (286)
218 TIGR01832 kduD 2-deoxy-D-gluco 85.8 1.2 2.7E-05 44.0 5.1 34 413-446 2-36 (248)
219 PRK14185 bifunctional 5,10-met 85.8 2 4.2E-05 46.1 6.8 52 392-448 137-193 (293)
220 PRK07060 short chain dehydroge 85.6 1.4 3.1E-05 43.3 5.4 35 412-446 5-40 (245)
221 TIGR00036 dapB dihydrodipicoli 85.6 5.1 0.00011 41.8 9.7 88 417-523 2-92 (266)
222 COG0169 AroE Shikimate 5-dehyd 85.6 6.9 0.00015 41.7 10.7 51 396-448 108-158 (283)
223 PRK12828 short chain dehydroge 85.6 1.4 2.9E-05 43.0 5.2 35 413-448 4-39 (239)
224 PRK01710 murD UDP-N-acetylmura 85.6 1.1 2.3E-05 50.0 5.0 35 413-448 11-45 (458)
225 PLN02350 phosphogluconate dehy 85.5 1.9 4.1E-05 49.2 7.0 110 417-544 7-129 (493)
226 KOG0068 D-3-phosphoglycerate d 85.5 0.69 1.5E-05 50.4 3.3 36 410-445 140-175 (406)
227 PLN00203 glutamyl-tRNA reducta 85.4 1.8 3.8E-05 49.7 6.7 51 398-448 246-298 (519)
228 CHL00073 chlN photochlorophyll 85.3 9.3 0.0002 43.4 12.1 42 407-448 305-346 (457)
229 PRK07523 gluconate 5-dehydroge 85.1 1.4 3.1E-05 43.9 5.2 35 413-448 7-42 (255)
230 TIGR02279 PaaC-3OHAcCoADH 3-hy 85.1 1.3 2.8E-05 50.5 5.4 31 417-448 6-36 (503)
231 PRK06841 short chain dehydroge 84.9 1.5 3.3E-05 43.5 5.3 35 412-446 11-46 (255)
232 PRK02006 murD UDP-N-acetylmura 84.4 1.3 2.8E-05 49.8 5.0 36 413-449 4-39 (498)
233 PRK01390 murD UDP-N-acetylmura 84.3 1.3 2.9E-05 49.1 4.9 35 413-448 6-40 (460)
234 PLN02240 UDP-glucose 4-epimera 84.3 1.6 3.5E-05 45.8 5.3 35 413-447 2-37 (352)
235 PRK08328 hypothetical protein; 84.1 1.2 2.7E-05 45.4 4.3 36 413-448 24-59 (231)
236 cd00755 YgdL_like Family of ac 84.1 1.2 2.7E-05 45.7 4.3 36 413-448 8-43 (231)
237 PRK08293 3-hydroxybutyryl-CoA 84.1 1.9 4.1E-05 45.0 5.7 31 417-448 4-34 (287)
238 TIGR00873 gnd 6-phosphoglucona 84.0 2.3 5E-05 48.1 6.7 105 419-544 2-120 (467)
239 PLN02712 arogenate dehydrogena 84.0 1.6 3.5E-05 51.5 5.7 38 410-448 363-400 (667)
240 PRK06125 short chain dehydroge 83.9 1.9 4.2E-05 43.2 5.5 36 412-448 3-39 (259)
241 TIGR01202 bchC 2-desacetyl-2-h 83.8 1.5 3.2E-05 45.9 4.8 35 414-448 143-177 (308)
242 TIGR02355 moeB molybdopterin s 83.8 1.3 2.9E-05 45.6 4.4 36 413-448 21-56 (240)
243 PRK06138 short chain dehydroge 83.7 1.8 3.9E-05 42.8 5.2 34 413-446 2-36 (252)
244 cd08230 glucose_DH Glucose deh 83.7 2.5 5.4E-05 44.8 6.5 33 414-446 171-203 (355)
245 PLN02688 pyrroline-5-carboxyla 83.7 3.5 7.5E-05 42.2 7.4 24 417-440 1-24 (266)
246 COG1063 Tdh Threonine dehydrog 83.6 5.7 0.00012 42.9 9.3 34 415-448 168-201 (350)
247 PRK05808 3-hydroxybutyryl-CoA 83.5 1.5 3.2E-05 45.5 4.7 31 417-448 4-34 (282)
248 PRK05557 fabG 3-ketoacyl-(acyl 83.5 2.2 4.7E-05 41.7 5.6 36 413-448 2-38 (248)
249 TIGR02354 thiF_fam2 thiamine b 83.5 1.5 3.2E-05 44.0 4.5 37 413-449 18-54 (200)
250 PTZ00353 glycosomal glyceralde 83.5 6.7 0.00015 42.9 9.7 98 417-523 3-116 (342)
251 PRK05690 molybdopterin biosynt 83.5 1.6 3.4E-05 45.1 4.8 36 413-448 29-64 (245)
252 PRK08217 fabG 3-ketoacyl-(acyl 83.4 2.1 4.4E-05 42.2 5.4 35 413-448 2-37 (253)
253 PF03721 UDPG_MGDP_dh_N: UDP-g 83.4 1.5 3.1E-05 43.5 4.3 31 417-448 1-31 (185)
254 PRK05786 fabG 3-ketoacyl-(acyl 83.3 2.1 4.5E-05 42.1 5.4 33 413-445 2-35 (238)
255 PRK13394 3-hydroxybutyrate deh 83.2 2 4.3E-05 42.8 5.2 35 413-448 4-39 (262)
256 PRK00141 murD UDP-N-acetylmura 83.1 1.6 3.5E-05 48.9 5.1 36 412-448 11-46 (473)
257 PRK07774 short chain dehydroge 83.1 2.1 4.6E-05 42.3 5.4 35 413-448 3-38 (250)
258 PRK06523 short chain dehydroge 83.0 2 4.4E-05 42.9 5.3 35 412-446 5-40 (260)
259 PRK08416 7-alpha-hydroxysteroi 82.8 2.2 4.7E-05 43.0 5.4 37 412-448 4-41 (260)
260 PRK07231 fabG 3-ketoacyl-(acyl 82.8 2.2 4.8E-05 42.0 5.4 35 413-448 2-37 (251)
261 PRK04308 murD UDP-N-acetylmura 82.7 1.9 4.1E-05 47.6 5.4 35 413-448 2-36 (445)
262 PRK12938 acetyacetyl-CoA reduc 82.7 2.2 4.8E-05 42.2 5.4 35 414-448 1-36 (246)
263 PRK12742 oxidoreductase; Provi 82.5 2.4 5.2E-05 41.6 5.5 34 413-446 3-37 (237)
264 PRK08642 fabG 3-ketoacyl-(acyl 82.4 2.5 5.5E-05 41.8 5.6 35 413-447 2-37 (253)
265 COG1064 AdhP Zn-dependent alco 82.4 1.9 4.1E-05 47.0 5.0 34 415-448 166-199 (339)
266 PRK09072 short chain dehydroge 82.4 2.3 5E-05 42.7 5.4 34 413-446 2-36 (263)
267 cd01492 Aos1_SUMO Ubiquitin ac 82.3 1.4 3E-05 44.1 3.7 36 413-448 18-53 (197)
268 PLN02586 probable cinnamyl alc 82.3 3.6 7.8E-05 44.1 7.1 35 414-448 182-216 (360)
269 PRK03369 murD UDP-N-acetylmura 82.2 1.9 4.2E-05 48.6 5.2 34 414-448 10-43 (488)
270 PRK08703 short chain dehydroge 82.1 2.5 5.3E-05 41.8 5.4 35 413-448 3-38 (239)
271 PRK08644 thiamine biosynthesis 82.1 1.7 3.6E-05 44.0 4.2 37 413-449 25-61 (212)
272 PRK12429 3-hydroxybutyrate deh 82.0 2.3 5.1E-05 42.0 5.2 32 414-445 2-34 (258)
273 PRK10637 cysG siroheme synthas 82.0 1.7 3.8E-05 48.7 4.7 36 412-447 8-43 (457)
274 PRK04148 hypothetical protein; 81.9 2.5 5.4E-05 40.4 5.1 33 414-448 15-47 (134)
275 cd01485 E1-1_like Ubiquitin ac 81.9 1.6 3.5E-05 43.6 4.0 36 413-448 16-51 (198)
276 PRK06949 short chain dehydroge 81.7 2.4 5.3E-05 42.1 5.3 35 412-446 5-40 (258)
277 PRK07688 thiamine/molybdopteri 81.5 1.8 3.9E-05 47.0 4.5 37 413-449 21-57 (339)
278 PRK09186 flagellin modificatio 81.3 2.4 5.3E-05 42.1 5.1 32 414-445 2-34 (256)
279 PRK07340 ornithine cyclodeamin 81.3 3.7 7.9E-05 43.7 6.7 112 414-546 123-240 (304)
280 PRK08618 ornithine cyclodeamin 81.2 8.6 0.00019 41.2 9.5 34 415-448 126-160 (325)
281 PRK06153 hypothetical protein; 81.1 1.2 2.5E-05 49.5 2.9 36 413-448 173-208 (393)
282 PLN02896 cinnamyl-alcohol dehy 81.1 2.7 5.8E-05 44.6 5.6 37 411-447 5-42 (353)
283 PRK08264 short chain dehydroge 81.1 2.6 5.6E-05 41.5 5.1 34 413-446 3-38 (238)
284 PRK06172 short chain dehydroge 81.0 2.8 6.1E-05 41.7 5.4 36 412-448 3-39 (253)
285 PRK06550 fabG 3-ketoacyl-(acyl 81.0 2.7 5.8E-05 41.3 5.2 35 413-448 2-37 (235)
286 PRK10669 putative cation:proto 80.9 6.8 0.00015 44.9 9.1 31 417-448 418-448 (558)
287 COG1004 Ugd Predicted UDP-gluc 80.9 6.8 0.00015 43.8 8.6 134 333-506 218-384 (414)
288 TIGR02622 CDP_4_6_dhtase CDP-g 80.8 2.4 5.2E-05 44.9 5.1 33 414-446 2-35 (349)
289 PRK06057 short chain dehydroge 80.8 2.7 5.8E-05 42.1 5.2 33 413-445 4-37 (255)
290 PF03853 YjeF_N: YjeF-related 80.7 17 0.00037 35.4 10.5 47 394-444 7-57 (169)
291 PRK07806 short chain dehydroge 80.6 3.3 7.1E-05 41.0 5.7 35 413-447 3-38 (248)
292 PRK05875 short chain dehydroge 80.5 2.9 6.4E-05 42.2 5.4 34 413-446 4-38 (276)
293 PRK08993 2-deoxy-D-gluconate 3 80.5 2.7 5.8E-05 42.2 5.1 33 413-445 7-40 (253)
294 PRK05579 bifunctional phosphop 80.4 5 0.00011 44.6 7.6 35 412-446 184-235 (399)
295 PRK08339 short chain dehydroge 80.4 3 6.5E-05 42.4 5.5 36 412-448 4-40 (263)
296 PRK07576 short chain dehydroge 80.4 2.9 6.2E-05 42.4 5.3 35 413-448 6-41 (264)
297 PRK11559 garR tartronate semia 80.3 4.2 9.1E-05 42.3 6.6 31 417-448 3-33 (296)
298 PRK12939 short chain dehydroge 80.3 3 6.5E-05 41.1 5.3 33 413-445 4-37 (250)
299 PRK06476 pyrroline-5-carboxyla 80.3 1.4 3.1E-05 45.1 3.1 32 417-448 1-34 (258)
300 COG0771 MurD UDP-N-acetylmuram 80.3 2.1 4.6E-05 48.3 4.6 35 413-448 4-38 (448)
301 PRK06197 short chain dehydroge 80.2 3 6.4E-05 43.3 5.4 36 412-447 12-48 (306)
302 PRK05867 short chain dehydroge 80.1 2.8 6.1E-05 41.9 5.1 35 413-448 6-41 (253)
303 PRK08945 putative oxoacyl-(acy 80.1 2.7 5.8E-05 41.8 4.9 35 413-448 9-44 (247)
304 PRK08936 glucose-1-dehydrogena 80.1 3.5 7.6E-05 41.4 5.8 37 412-448 3-40 (261)
305 PRK00421 murC UDP-N-acetylmura 80.1 2.3 4.9E-05 47.4 4.8 34 414-448 5-39 (461)
306 PRK12829 short chain dehydroge 80.0 3 6.4E-05 41.5 5.2 34 413-446 8-42 (264)
307 PRK12748 3-ketoacyl-(acyl-carr 80.0 2.8 6.1E-05 42.0 5.0 33 413-445 2-37 (256)
308 TIGR03325 BphB_TodD cis-2,3-di 79.7 3.2 6.9E-05 41.8 5.4 35 413-448 2-37 (262)
309 PRK06079 enoyl-(acyl carrier p 79.7 3.1 6.6E-05 42.0 5.2 35 413-448 4-41 (252)
310 PRK08223 hypothetical protein; 79.6 2.1 4.5E-05 45.7 4.1 36 413-448 24-59 (287)
311 PRK06398 aldose dehydrogenase; 79.6 3.3 7.1E-05 41.9 5.4 34 413-446 3-37 (258)
312 COG0673 MviM Predicted dehydro 79.5 4.6 0.0001 42.2 6.7 108 416-547 3-125 (342)
313 PRK07890 short chain dehydroge 79.5 3.1 6.8E-05 41.3 5.1 35 413-448 2-37 (258)
314 PLN02653 GDP-mannose 4,6-dehyd 79.4 2.8 6.1E-05 44.0 5.1 35 413-447 3-38 (340)
315 PRK07062 short chain dehydroge 79.4 3.4 7.3E-05 41.5 5.4 36 412-448 4-40 (265)
316 PRK08261 fabG 3-ketoacyl-(acyl 79.4 8 0.00017 42.6 8.8 34 412-445 206-240 (450)
317 TIGR01692 HIBADH 3-hydroxyisob 79.3 3 6.6E-05 43.5 5.2 27 421-448 1-27 (288)
318 PRK12937 short chain dehydroge 79.3 3.7 8E-05 40.4 5.6 36 413-448 2-38 (245)
319 COG2344 AT-rich DNA-binding pr 79.1 3.4 7.3E-05 42.0 5.1 53 395-448 64-118 (211)
320 PRK06300 enoyl-(acyl carrier p 79.1 2.9 6.2E-05 44.4 5.0 36 411-447 3-41 (299)
321 COG1179 Dinucleotide-utilizing 79.0 1.9 4.1E-05 45.2 3.5 35 414-448 28-62 (263)
322 cd01483 E1_enzyme_family Super 79.0 2.8 6.1E-05 39.0 4.3 31 418-448 1-31 (143)
323 PRK06124 gluconate 5-dehydroge 78.9 3.4 7.5E-05 41.2 5.3 36 412-448 7-43 (256)
324 PRK06522 2-dehydropantoate 2-r 78.9 2.8 6.1E-05 43.3 4.7 31 417-448 1-31 (304)
325 PRK06171 sorbitol-6-phosphate 78.8 3.4 7.4E-05 41.5 5.2 33 413-445 6-39 (266)
326 PRK07066 3-hydroxybutyryl-CoA 78.8 1.9 4.2E-05 46.5 3.6 31 417-448 8-38 (321)
327 PRK06196 oxidoreductase; Provi 78.7 3.3 7.3E-05 43.2 5.3 36 411-446 21-57 (315)
328 PRK06463 fabG 3-ketoacyl-(acyl 78.6 4.2 9E-05 40.7 5.8 36 412-447 3-39 (255)
329 PRK14619 NAD(P)H-dependent gly 78.4 3 6.6E-05 44.0 4.9 33 415-448 3-35 (308)
330 PRK07533 enoyl-(acyl carrier p 78.4 3.6 7.8E-05 41.6 5.3 36 412-448 6-44 (258)
331 PRK08063 enoyl-(acyl carrier p 78.3 3.8 8.3E-05 40.5 5.4 35 414-448 2-37 (250)
332 PRK07035 short chain dehydroge 78.3 3.6 7.9E-05 40.9 5.2 34 413-446 5-39 (252)
333 COG1712 Predicted dinucleotide 78.3 4.4 9.4E-05 42.3 5.8 82 417-523 1-84 (255)
334 PRK06505 enoyl-(acyl carrier p 78.2 3.5 7.6E-05 42.3 5.2 35 413-448 4-41 (271)
335 PRK07814 short chain dehydroge 78.2 3.7 7.9E-05 41.5 5.3 35 413-448 7-42 (263)
336 PRK15181 Vi polysaccharide bio 78.0 3.2 7E-05 44.1 5.0 35 413-447 12-47 (348)
337 PTZ00082 L-lactate dehydrogena 78.0 7.4 0.00016 41.9 7.7 33 415-448 5-38 (321)
338 PRK08226 short chain dehydroge 77.9 3.7 8.1E-05 41.1 5.2 35 413-448 3-38 (263)
339 PF01210 NAD_Gly3P_dh_N: NAD-d 77.8 6 0.00013 37.8 6.3 30 418-448 1-30 (157)
340 PRK07326 short chain dehydroge 77.8 4.1 8.8E-05 40.0 5.3 34 414-448 4-38 (237)
341 PRK12823 benD 1,6-dihydroxycyc 77.8 3.7 8.1E-05 41.0 5.2 36 412-448 4-40 (260)
342 PRK09880 L-idonate 5-dehydroge 77.8 6 0.00013 41.8 7.0 35 414-448 168-202 (343)
343 PRK09424 pntA NAD(P) transhydr 77.8 5.5 0.00012 45.7 7.0 35 413-448 162-196 (509)
344 PRK09987 dTDP-4-dehydrorhamnos 77.8 6.7 0.00014 40.9 7.2 29 417-446 1-30 (299)
345 PRK08213 gluconate 5-dehydroge 77.8 3.8 8.3E-05 41.0 5.2 35 413-448 9-44 (259)
346 PRK10206 putative oxidoreducta 77.8 2.9 6.3E-05 45.0 4.6 103 417-544 2-119 (344)
347 PRK08594 enoyl-(acyl carrier p 77.7 3.6 7.8E-05 41.8 5.1 35 413-448 4-41 (257)
348 PRK05876 short chain dehydroge 77.7 3.8 8.2E-05 42.1 5.3 35 413-448 3-38 (275)
349 PRK05653 fabG 3-ketoacyl-(acyl 77.7 4.1 8.9E-05 39.7 5.3 35 413-448 2-37 (246)
350 PRK12746 short chain dehydroge 77.7 4.3 9.4E-05 40.3 5.5 35 413-447 3-38 (254)
351 PLN02256 arogenate dehydrogena 77.6 4.1 8.9E-05 43.5 5.6 35 413-447 33-67 (304)
352 COG1023 Gnd Predicted 6-phosph 77.5 4.3 9.3E-05 42.8 5.5 112 418-555 2-125 (300)
353 cd08237 ribitol-5-phosphate_DH 77.5 3.9 8.5E-05 43.4 5.5 33 415-448 163-197 (341)
354 PRK07063 short chain dehydroge 77.5 3.9 8.5E-05 40.9 5.2 35 413-448 4-39 (260)
355 PRK05872 short chain dehydroge 77.5 3.9 8.4E-05 42.4 5.3 36 412-448 5-41 (296)
356 PLN02986 cinnamyl-alcohol dehy 77.4 4.3 9.3E-05 42.3 5.7 35 414-448 3-38 (322)
357 PRK07478 short chain dehydroge 77.4 4.2 9.1E-05 40.6 5.4 35 413-448 3-38 (254)
358 PRK11730 fadB multifunctional 77.4 3.9 8.4E-05 48.6 5.9 31 417-448 314-344 (715)
359 PRK05866 short chain dehydroge 77.3 4.2 9.1E-05 42.3 5.5 37 411-448 35-72 (293)
360 PRK06500 short chain dehydroge 77.2 3.9 8.5E-05 40.3 5.1 35 413-448 3-38 (249)
361 PRK06935 2-deoxy-D-gluconate 3 77.2 4.1 8.9E-05 40.8 5.2 33 413-445 12-45 (258)
362 PRK12859 3-ketoacyl-(acyl-carr 77.2 3.8 8.2E-05 41.3 5.0 33 413-445 3-38 (256)
363 TIGR03206 benzo_BadH 2-hydroxy 77.1 3.9 8.5E-05 40.3 5.0 32 414-445 1-33 (250)
364 PRK09135 pteridine reductase; 77.1 4.3 9.3E-05 39.9 5.3 34 414-447 4-38 (249)
365 PRK12481 2-deoxy-D-gluconate 3 77.0 3.8 8.3E-05 41.2 5.0 33 413-445 5-38 (251)
366 PLN02730 enoyl-[acyl-carrier-p 76.9 3.8 8.3E-05 43.6 5.2 34 411-444 4-40 (303)
367 PRK09620 hypothetical protein; 76.9 4.1 9E-05 41.8 5.2 35 414-448 1-52 (229)
368 PLN00141 Tic62-NAD(P)-related 76.9 4.2 9E-05 41.0 5.2 37 412-448 13-50 (251)
369 PRK06077 fabG 3-ketoacyl-(acyl 76.7 4.9 0.00011 39.7 5.6 36 413-448 3-39 (252)
370 PLN02662 cinnamyl-alcohol dehy 76.6 3.5 7.6E-05 42.6 4.7 32 415-446 3-35 (322)
371 PRK12491 pyrroline-5-carboxyla 76.6 7.3 0.00016 40.8 7.0 32 417-448 3-37 (272)
372 PRK05597 molybdopterin biosynt 76.5 3.1 6.8E-05 45.3 4.5 37 413-449 25-61 (355)
373 PRK06194 hypothetical protein; 76.5 4.3 9.3E-05 41.3 5.2 35 413-448 3-38 (287)
374 PRK07856 short chain dehydroge 76.5 4.7 0.0001 40.2 5.5 35 412-446 2-37 (252)
375 PRK07411 hypothetical protein; 76.4 3 6.4E-05 46.1 4.3 36 413-448 35-70 (390)
376 PRK09242 tropinone reductase; 76.4 4.3 9.4E-05 40.6 5.2 34 413-446 6-40 (257)
377 COG1250 FadB 3-hydroxyacyl-CoA 76.4 3.1 6.8E-05 44.8 4.3 32 416-448 3-34 (307)
378 PRK07984 enoyl-(acyl carrier p 76.4 4.4 9.6E-05 41.5 5.3 34 414-448 4-40 (262)
379 PRK07825 short chain dehydroge 76.3 4.7 0.0001 40.8 5.4 35 413-448 2-37 (273)
380 TIGR03366 HpnZ_proposed putati 76.2 7.9 0.00017 39.8 7.1 34 414-448 119-153 (280)
381 PF13738 Pyr_redox_3: Pyridine 76.1 3.4 7.3E-05 39.7 4.2 33 413-445 164-196 (203)
382 PLN02514 cinnamyl-alcohol dehy 76.1 7.7 0.00017 41.4 7.3 42 407-448 172-213 (357)
383 PRK00066 ldh L-lactate dehydro 76.0 6.5 0.00014 42.1 6.6 34 415-448 5-39 (315)
384 PRK08265 short chain dehydroge 75.9 4.6 9.9E-05 40.8 5.2 35 413-448 3-38 (261)
385 PLN02206 UDP-glucuronate decar 75.9 3.9 8.4E-05 45.8 5.1 37 411-447 114-151 (442)
386 PRK05854 short chain dehydroge 75.9 4.4 9.6E-05 42.6 5.3 35 412-446 10-45 (313)
387 PF02254 TrkA_N: TrkA-N domain 75.9 4.7 0.0001 35.6 4.7 28 419-446 1-28 (116)
388 TIGR02437 FadB fatty oxidation 75.8 4.7 0.0001 48.0 6.0 31 417-448 314-344 (714)
389 PRK12827 short chain dehydroge 75.8 4.6 9.9E-05 39.6 5.1 34 413-446 3-37 (249)
390 TIGR03736 PRTRC_ThiF PRTRC sys 75.6 3.2 7E-05 43.2 4.1 25 415-439 10-34 (244)
391 COG2085 Predicted dinucleotide 75.6 4.2 9E-05 41.7 4.7 31 417-448 2-32 (211)
392 PRK07370 enoyl-(acyl carrier p 75.5 4.4 9.6E-05 41.1 5.0 32 413-444 3-37 (258)
393 PRK12825 fabG 3-ketoacyl-(acyl 75.4 5.4 0.00012 38.8 5.4 36 413-448 3-39 (249)
394 PRK12550 shikimate 5-dehydroge 75.4 7.7 0.00017 40.9 6.9 49 395-448 106-154 (272)
395 PTZ00117 malate dehydrogenase; 75.4 8.7 0.00019 41.2 7.4 34 414-448 3-37 (319)
396 TIGR00561 pntA NAD(P) transhyd 75.4 7.5 0.00016 44.7 7.2 35 413-448 161-195 (511)
397 PRK09496 trkA potassium transp 75.3 6.1 0.00013 43.4 6.4 36 412-448 227-262 (453)
398 PF13460 NAD_binding_10: NADH( 75.2 4.5 9.7E-05 38.3 4.7 30 419-448 1-31 (183)
399 PRK07577 short chain dehydroge 75.1 5.1 0.00011 39.2 5.2 33 415-447 2-35 (234)
400 PRK06914 short chain dehydroge 75.1 4.9 0.00011 40.7 5.2 32 415-446 2-34 (280)
401 PRK08017 oxidoreductase; Provi 75.1 4.5 9.7E-05 40.2 4.8 30 417-446 3-33 (256)
402 PRK08589 short chain dehydroge 75.0 5 0.00011 40.9 5.3 33 413-445 3-36 (272)
403 PRK05565 fabG 3-ketoacyl-(acyl 75.0 5.1 0.00011 39.2 5.2 36 413-448 2-38 (247)
404 PRK05447 1-deoxy-D-xylulose 5- 74.9 18 0.00039 40.3 9.8 32 417-448 2-37 (385)
405 PLN02695 GDP-D-mannose-3',5'-e 74.9 4.3 9.3E-05 43.9 5.0 32 415-446 20-52 (370)
406 PRK11154 fadJ multifunctional 74.9 4.8 0.0001 47.8 5.8 31 417-448 310-341 (708)
407 PLN02214 cinnamoyl-CoA reducta 74.7 4.6 0.0001 43.0 5.1 34 414-447 8-42 (342)
408 PRK05993 short chain dehydroge 74.7 4.8 0.0001 41.1 5.1 32 415-446 3-35 (277)
409 PRK15182 Vi polysaccharide bio 74.6 21 0.00046 39.9 10.5 31 416-448 6-36 (425)
410 PLN02178 cinnamyl-alcohol dehy 74.6 7.9 0.00017 42.0 7.0 35 414-448 177-211 (375)
411 PRK07067 sorbitol dehydrogenas 74.6 5.3 0.00012 39.9 5.3 35 413-448 3-38 (257)
412 PRK12744 short chain dehydroge 74.6 5.3 0.00011 40.0 5.2 35 413-447 5-40 (257)
413 PF13380 CoA_binding_2: CoA bi 74.6 30 0.00066 31.7 9.8 98 417-546 1-109 (116)
414 PRK07878 molybdopterin biosynt 74.6 3.5 7.7E-05 45.4 4.3 35 414-448 40-74 (392)
415 PRK03806 murD UDP-N-acetylmura 74.5 4.6 0.0001 44.5 5.2 35 413-448 3-37 (438)
416 PRK05225 ketol-acid reductoiso 74.4 1.8 3.8E-05 49.1 1.9 31 413-443 33-63 (487)
417 PRK06198 short chain dehydroge 74.4 5.3 0.00012 39.8 5.2 36 413-448 3-39 (260)
418 cd08231 MDR_TM0436_like Hypoth 74.3 8.9 0.00019 40.5 7.1 41 407-447 169-210 (361)
419 COG0604 Qor NADPH:quinone redu 74.3 6.8 0.00015 42.1 6.3 57 392-448 118-176 (326)
420 PLN02253 xanthoxin dehydrogena 74.3 5.3 0.00011 40.6 5.2 35 413-448 15-50 (280)
421 PRK07831 short chain dehydroge 74.3 5.2 0.00011 40.2 5.1 35 413-448 14-50 (262)
422 PRK08862 short chain dehydroge 74.1 5.5 0.00012 40.0 5.2 35 413-448 2-37 (227)
423 PRK12833 acetyl-CoA carboxylas 74.1 37 0.0008 38.2 12.3 30 417-446 6-35 (467)
424 PRK06182 short chain dehydroge 74.0 5.4 0.00012 40.4 5.2 32 415-446 2-34 (273)
425 PLN02858 fructose-bisphosphate 74.0 5.7 0.00012 50.7 6.4 33 415-448 3-35 (1378)
426 PRK08690 enoyl-(acyl carrier p 73.9 5.4 0.00012 40.5 5.2 32 413-444 3-37 (261)
427 PRK08085 gluconate 5-dehydroge 73.8 5.5 0.00012 39.7 5.1 35 413-448 6-41 (254)
428 PRK03803 murD UDP-N-acetylmura 73.7 3.9 8.5E-05 45.2 4.4 32 416-448 6-37 (448)
429 PLN00198 anthocyanidin reducta 73.6 5.1 0.00011 42.1 5.1 34 413-446 6-40 (338)
430 PRK07666 fabG 3-ketoacyl-(acyl 73.6 6.1 0.00013 39.0 5.3 35 413-448 4-39 (239)
431 TIGR02441 fa_ox_alpha_mit fatt 73.6 4.7 0.0001 48.2 5.3 31 417-448 336-366 (737)
432 PRK08277 D-mannonate oxidoredu 73.6 5.6 0.00012 40.3 5.2 36 412-448 6-42 (278)
433 PRK00683 murD UDP-N-acetylmura 73.5 4.4 9.4E-05 44.6 4.7 33 415-448 2-34 (418)
434 PRK12771 putative glutamate sy 73.5 4.3 9.3E-05 46.5 4.8 34 414-448 135-168 (564)
435 PRK08278 short chain dehydroge 73.4 5.9 0.00013 40.4 5.4 34 413-446 3-37 (273)
436 PF02558 ApbA: Ketopantoate re 73.4 5.6 0.00012 36.9 4.7 30 419-448 1-30 (151)
437 cd08295 double_bond_reductase_ 73.4 10 0.00022 39.8 7.2 35 414-448 150-185 (338)
438 PRK01368 murD UDP-N-acetylmura 73.4 4 8.7E-05 45.8 4.4 33 414-448 4-36 (454)
439 PLN03154 putative allyl alcoho 73.4 9.5 0.00021 40.7 7.1 35 414-448 157-192 (348)
440 COG2130 Putative NADP-dependen 73.4 6.3 0.00014 42.7 5.6 55 387-448 129-184 (340)
441 PF00106 adh_short: short chai 73.3 5.8 0.00013 36.7 4.8 32 417-448 1-33 (167)
442 PRK09496 trkA potassium transp 73.1 4.3 9.4E-05 44.5 4.6 29 417-445 1-29 (453)
443 PRK02705 murD UDP-N-acetylmura 73.1 4.5 9.7E-05 44.7 4.7 30 418-448 2-31 (459)
444 PLN02427 UDP-apiose/xylose syn 73.0 5.5 0.00012 42.9 5.3 37 411-447 9-47 (386)
445 PRK00436 argC N-acetyl-gamma-g 72.9 12 0.00025 40.7 7.7 32 417-448 3-36 (343)
446 TIGR01915 npdG NADPH-dependent 72.9 5.4 0.00012 40.0 4.8 31 417-448 1-32 (219)
447 PRK08220 2,3-dihydroxybenzoate 72.9 6.7 0.00014 38.8 5.4 36 412-447 4-40 (252)
448 PRK06113 7-alpha-hydroxysteroi 72.8 6.1 0.00013 39.5 5.2 33 413-445 8-41 (255)
449 PRK06603 enoyl-(acyl carrier p 72.8 6 0.00013 40.2 5.2 35 413-448 5-42 (260)
450 PRK06114 short chain dehydroge 72.6 6.4 0.00014 39.4 5.3 35 413-448 5-40 (254)
451 PLN02858 fructose-bisphosphate 72.5 6 0.00013 50.5 6.1 33 415-448 323-355 (1378)
452 PRK12359 flavodoxin FldB; Prov 72.3 6.1 0.00013 39.0 4.9 44 412-455 75-128 (172)
453 PRK06912 acoL dihydrolipoamide 72.3 15 0.00033 40.9 8.6 37 416-453 170-206 (458)
454 PRK12747 short chain dehydroge 72.2 6.7 0.00015 39.1 5.3 33 414-446 2-35 (252)
455 PRK06200 2,3-dihydroxy-2,3-dih 72.2 6.3 0.00014 39.6 5.2 35 413-448 3-38 (263)
456 PRK06701 short chain dehydroge 72.1 6.2 0.00014 40.9 5.2 34 412-445 42-76 (290)
457 KOG0023 Alcohol dehydrogenase, 72.0 6.7 0.00014 42.8 5.4 42 406-448 173-214 (360)
458 PRK12936 3-ketoacyl-(acyl-carr 71.9 6.7 0.00014 38.5 5.1 35 413-448 3-38 (245)
459 TIGR03628 arch_S11P archaeal r 71.9 15 0.00032 34.4 7.0 64 389-452 38-110 (114)
460 cd01487 E1_ThiF_like E1_ThiF_l 71.7 4.9 0.00011 39.3 4.1 32 418-449 1-32 (174)
461 PLN02686 cinnamoyl-CoA reducta 71.5 6.4 0.00014 42.5 5.3 37 412-448 49-86 (367)
462 PRK07792 fabG 3-ketoacyl-(acyl 71.5 6.4 0.00014 41.2 5.2 36 412-448 8-44 (306)
463 PRK12935 acetoacetyl-CoA reduc 71.5 7.4 0.00016 38.5 5.4 35 413-447 3-38 (247)
464 TIGR01963 PHB_DH 3-hydroxybuty 71.4 6.1 0.00013 39.0 4.8 32 416-448 1-33 (255)
465 KOG1207 Diacetyl reductase/L-x 71.3 5.9 0.00013 40.1 4.5 37 412-448 3-40 (245)
466 TIGR01421 gluta_reduc_1 glutat 71.3 15 0.00033 40.9 8.4 43 416-461 166-208 (450)
467 PRK12769 putative oxidoreducta 71.3 5.4 0.00012 46.7 5.0 33 415-448 326-358 (654)
468 PRK12743 oxidoreductase; Provi 71.2 7.4 0.00016 39.0 5.4 33 416-448 2-35 (256)
469 PRK08159 enoyl-(acyl carrier p 71.2 6.2 0.00014 40.5 4.9 35 413-448 7-44 (272)
470 KOG0455 Homoserine dehydrogena 71.1 5.4 0.00012 42.3 4.4 41 416-456 3-52 (364)
471 PRK07097 gluconate 5-dehydroge 71.1 6.9 0.00015 39.4 5.2 36 412-448 6-42 (265)
472 PRK09607 rps11p 30S ribosomal 71.0 16 0.00034 35.1 7.1 66 389-454 45-119 (132)
473 cd01491 Ube1_repeat1 Ubiquitin 70.9 5 0.00011 42.8 4.3 35 414-448 17-51 (286)
474 PRK07889 enoyl-(acyl carrier p 70.9 6.4 0.00014 39.9 4.9 35 413-448 4-41 (256)
475 PRK10309 galactitol-1-phosphat 70.8 6.5 0.00014 41.4 5.1 35 414-448 159-193 (347)
476 COG0300 DltE Short-chain dehyd 70.7 12 0.00025 39.8 6.8 36 413-448 3-39 (265)
477 PRK12921 2-dehydropantoate 2-r 70.5 5.6 0.00012 41.3 4.4 29 417-445 1-29 (305)
478 PRK06139 short chain dehydroge 70.5 7 0.00015 41.8 5.3 36 412-448 3-39 (330)
479 PRK07985 oxidoreductase; Provi 70.4 6.8 0.00015 40.8 5.0 32 413-444 46-78 (294)
480 PLN02572 UDP-sulfoquinovose sy 70.4 6 0.00013 44.2 4.9 35 412-446 43-78 (442)
481 TIGR01850 argC N-acetyl-gamma- 70.3 11 0.00025 40.8 6.9 32 417-448 1-34 (346)
482 TIGR03632 bact_S11 30S ribosom 70.3 17 0.00036 33.4 7.0 66 389-454 35-101 (108)
483 TIGR01316 gltA glutamate synth 70.2 6.3 0.00014 43.9 5.0 34 414-448 270-303 (449)
484 TIGR01087 murD UDP-N-acetylmur 70.1 4.7 0.0001 44.3 4.0 30 418-448 1-30 (433)
485 PRK12409 D-amino acid dehydrog 70.0 5.9 0.00013 42.9 4.6 31 417-448 2-32 (410)
486 PRK06997 enoyl-(acyl carrier p 69.9 7 0.00015 39.8 4.9 33 413-445 3-38 (260)
487 COG0686 Ald Alanine dehydrogen 69.8 9.3 0.0002 41.7 5.9 34 414-448 166-199 (371)
488 PRK06249 2-dehydropantoate 2-r 69.8 5.6 0.00012 42.0 4.4 33 415-447 4-36 (313)
489 PRK08177 short chain dehydroge 69.8 6.9 0.00015 38.4 4.7 30 417-446 2-32 (225)
490 PRK07454 short chain dehydroge 69.8 7.5 0.00016 38.4 5.0 33 415-448 5-38 (241)
491 PRK07236 hypothetical protein; 69.7 7.4 0.00016 41.9 5.3 36 414-450 4-39 (386)
492 PRK06046 alanine dehydrogenase 69.7 21 0.00046 38.3 8.8 108 416-544 129-244 (326)
493 cd08294 leukotriene_B4_DH_like 69.7 14 0.00031 38.0 7.2 35 414-448 142-177 (329)
494 TIGR00521 coaBC_dfp phosphopan 69.7 11 0.00024 41.9 6.7 37 412-448 181-234 (390)
495 PLN02657 3,8-divinyl protochlo 69.6 7.7 0.00017 42.5 5.5 37 410-446 54-91 (390)
496 KOG1502 Flavonol reductase/cin 69.6 15 0.00031 40.2 7.4 87 415-514 5-94 (327)
497 PRK08415 enoyl-(acyl carrier p 69.6 7.9 0.00017 40.0 5.3 35 413-448 2-39 (274)
498 TIGR01752 flav_long flavodoxin 69.4 12 0.00026 36.1 6.2 43 412-454 74-126 (167)
499 TIGR03201 dearomat_had 6-hydro 69.4 7.2 0.00016 41.3 5.1 33 414-446 165-197 (349)
500 PRK05708 2-dehydropantoate 2-r 69.3 5.9 0.00013 42.0 4.4 31 417-447 3-33 (305)
No 1
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-135 Score=1099.62 Aligned_cols=437 Identities=49% Similarity=0.918 Sum_probs=422.9
Q ss_pred hhhhHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHhhCcccHHHHHHhcCCceEEEEEEeEEcCCCCEEEEEEEEEEe
Q 006848 189 MSKTAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQF 268 (629)
Q Consensus 189 ~~~~~~~~~~~~~~~~p~~~~f~q~v~e~~~~~~~~~~~~p~y~~~~e~L~~Per~i~frvp~~~d~G~v~v~~GyRVqh 268 (629)
+...++++++.+.+|+|+|+||+|+|+|+++|+.|+|+++|+|.+++++|++|+|+|+|+|||+||+|++++|+||||||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~ef~qa~~e~~~~~~~~~~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqh 89 (454)
T PTZ00079 10 VAQEMDALRKRVKSRDPNQPEFLQAFHEVMTSLKPLFQKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQY 89 (454)
T ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEE
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhhcCCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCc
Q 006848 269 SQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDL 348 (629)
Q Consensus 269 s~alGPakGGlRfhp~vt~~evkaLA~~MT~KnALagLP~GGaKGGI~~DP~~~s~~El~R~~r~f~~eL~r~IGp~~DV 348 (629)
|+++|||||||||||+||++++++||++|||||||++||||||||||+|||+++|+.|||||||+||++|.+||||++||
T Consensus 90 n~alGP~kGGlRfhp~v~~~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~Dv 169 (454)
T PTZ00079 90 NSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDV 169 (454)
T ss_pred cCCCCCCCCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHH
Q 006848 349 PSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIA 428 (629)
Q Consensus 349 pApDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG 428 (629)
|||||||+++||+||+++|+++++.++|++||||+.+|||.+|++||||||+|++++++++.+.+|+|+||+||||||||
T Consensus 170 pA~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg 249 (454)
T PTZ00079 170 PAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVA 249 (454)
T ss_pred chhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhc-CcccccccccCCeeEeCCCCcccccccEEeecCC
Q 006848 429 MHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ-RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS 507 (629)
Q Consensus 429 ~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~-g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~ 507 (629)
+++|++|++.|+|||+|||++|+||||+|||+++|..|.++|+.+ +++.+|...++++++++++++|+++||||+|||+
T Consensus 250 ~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~ 329 (454)
T PTZ00079 250 QYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCAT 329 (454)
T ss_pred HHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccc
Confidence 999999999999999999999999999999999998889998865 7888886667789999999999999999999999
Q ss_pred CCccChhhHHH-------HHHccCCCCCCHHHHHHHHHcCCeeechhhcccccceeehhhhhcccCCCCCCHHHHHHHHH
Q 006848 508 QNEIDQSDAIN-------LVNSGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQ 580 (629)
Q Consensus 508 ~n~It~enA~~-------lI~eGAN~P~TpeA~~iL~erGIl~iPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~ 580 (629)
+|+||.++|.+ +|+||||||+|++|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|++||+
T Consensus 330 ~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~L~ 409 (454)
T PTZ00079 330 QNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLR 409 (454)
T ss_pred cccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHHHH
Confidence 99999999985 57799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcccHHHHHhHHHHHHHHHHHHhcCCC
Q 006848 581 EAMKQTYQRALKAATDFGYQKESPEALVHGAVISSFLTIAQAMTDQGCV 629 (629)
Q Consensus 581 ~~m~~~~~~v~~~A~~~g~~~~~~~~~~~aA~i~a~~rVa~Am~~~G~~ 629 (629)
++|.++|.+|+++|++++. ..+||.||||+||.|||+||.+||+|
T Consensus 410 ~~M~~~~~~~~~~a~~~~~----~~~~r~~A~i~~~~rva~Am~~~G~~ 454 (454)
T PTZ00079 410 EIMKSIFEACVKYAEKYGG----KSDLVAGANIAGFLKVADSMIEQGCV 454 (454)
T ss_pred HHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999963 23999999999999999999999986
No 2
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-130 Score=1060.67 Aligned_cols=431 Identities=43% Similarity=0.805 Sum_probs=417.5
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHhhCcccHH--HHHHhcCCceEEEEEEeEEcCCCCEEEEEEEEEEecC
Q 006848 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVN--IMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQ 270 (629)
Q Consensus 193 ~~~~~~~~~~~~p~~~~f~q~v~e~~~~~~~~~~~~p~y~~--~~e~L~~Per~i~frvp~~~d~G~v~v~~GyRVqhs~ 270 (629)
++++++.+.+++|+|+||+|++++++++++++++.+|+|.. ++++|++|+|+|+|+|||+||+|++++|+|||||||+
T Consensus 3 ~~~~~~~~~~~~~~e~eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~ 82 (445)
T PRK14030 3 IEKIMTSLEAKHPGESEYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNN 82 (445)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecC
Confidence 56789999999999999999999999999999999999985 9999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeeecCCCHHHHHHHHHHhhhhhhcCCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcCC
Q 006848 271 ALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPS 350 (629)
Q Consensus 271 alGPakGGlRfhp~vt~~evkaLA~~MT~KnALagLP~GGaKGGI~~DP~~~s~~El~R~~r~f~~eL~r~IGp~~DVpA 350 (629)
++|||||||||||+++++|+++||++|||||||++||||||||||++||+.+|+.|||||||+|+++|.+||||++||||
T Consensus 83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpA 162 (445)
T PRK14030 83 AIGPYKGGIRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPA 162 (445)
T ss_pred cccCCCCcEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHH
Q 006848 351 EEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMH 430 (629)
Q Consensus 351 pDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~ 430 (629)
|||||+++||+||+|+|+++.+..++++||||+.+|||.+|++||||||++++++++++.|.+|+|+||+||||||||++
T Consensus 163 pDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~ 242 (445)
T PRK14030 163 GDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWG 242 (445)
T ss_pred cccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcc-cccccccCCeeEeCCCCcccccccEEeecCCCC
Q 006848 431 VLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL-RDYSKTYARSKYYDEAKPWNERCDVAFPCASQN 509 (629)
Q Consensus 431 aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l-~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~n 509 (629)
+|++|++.|||||+|||++|+||||+|||++++..|.++|+..+++ ..+.+.||++++++++++|+++||||+|||++|
T Consensus 243 aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n 322 (445)
T PRK14030 243 AATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQN 322 (445)
T ss_pred HHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccc
Confidence 9999999999999999999999999999999988888999888776 445556789999999999999999999999999
Q ss_pred ccChhhHHHH-------HHccCCCCCCHHHHHHHHHcCCeeechhhcccccceeehhhhhcccCCCCCCHHHHHHHHHHH
Q 006848 510 EIDQSDAINL-------VNSGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEA 582 (629)
Q Consensus 510 ~It~enA~~l-------I~eGAN~P~TpeA~~iL~erGIl~iPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~ 582 (629)
+||.+||.++ |+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++
T Consensus 323 ~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~ 402 (445)
T PRK14030 323 ELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQI 402 (445)
T ss_pred cCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHHHHHH
Confidence 9999999864 779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCcccHHHHHhHHHHHHHHHHHHhcCCC
Q 006848 583 MKQTYQRALKAATDFG--YQKESPEALVHGAVISSFLTIAQAMTDQGCV 629 (629)
Q Consensus 583 m~~~~~~v~~~A~~~g--~~~~~~~~~~~aA~i~a~~rVa~Am~~~G~~ 629 (629)
|.++|+++++.+++++ + +||+|||++||.||++||..||+|
T Consensus 403 m~~~~~~v~~~~~~~~~~~------~lr~aA~~~a~~rva~a~~~rG~~ 445 (445)
T PRK14030 403 MSGIHEQCVKYGKEGDGYI------NYVKGANIAGFMKVAKAMLAQGVV 445 (445)
T ss_pred HHHHHHHHHHHhhccCCCC------CHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999988 6 899999999999999999999986
No 3
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-128 Score=1043.75 Aligned_cols=430 Identities=43% Similarity=0.807 Sum_probs=413.6
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHhhCcccH--HHHHHhcCCceEEEEEEeEEcCCCCEEEEEEEEEEecC
Q 006848 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYV--NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQ 270 (629)
Q Consensus 193 ~~~~~~~~~~~~p~~~~f~q~v~e~~~~~~~~~~~~p~y~--~~~e~L~~Per~i~frvp~~~d~G~v~v~~GyRVqhs~ 270 (629)
.+++++.+.+|+|+|+||+|+|+|+++++.|+|+++|+|. +++++|++|+|+++|+|||+||+|++++|+|||||||+
T Consensus 3 ~~~~~~~~~~~~~~~~e~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~ 82 (444)
T PRK14031 3 AAKVLEDLKRRFPNEPEYHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNN 82 (444)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecC
Confidence 4678899999999999999999999999999999999996 59999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeeecCCCHHHHHHHHHHhhhhhhcCCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcCC
Q 006848 271 ALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPS 350 (629)
Q Consensus 271 alGPakGGlRfhp~vt~~evkaLA~~MT~KnALagLP~GGaKGGI~~DP~~~s~~El~R~~r~f~~eL~r~IGp~~DVpA 350 (629)
++||+||||||||+++++++++||++|||||||++||||||||||++||+++|+.|||||||+|+++|.++|||++||||
T Consensus 83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipA 162 (444)
T PRK14031 83 AIGPYKGGIRFHASVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPA 162 (444)
T ss_pred CCcCCCCCeeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHH
Q 006848 351 EEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMH 430 (629)
Q Consensus 351 pDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~ 430 (629)
|||||+++||+||+|+|++++++..|++||||+.+|||.+|++||||||++++++++++.|.+|+|+||+||||||||++
T Consensus 163 pDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~ 242 (444)
T PRK14031 163 GDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQY 242 (444)
T ss_pred cccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhh-cCcccccccccCCeeEeCCCCcccccccEEeecCCCC
Q 006848 431 VLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ-QRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQN 509 (629)
Q Consensus 431 aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~-~g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~n 509 (629)
+|++|++.|||||+|||++|+||||+|||+++|..+.++|.. ++++..|...+ ++++++++++|+.+||||+|||++|
T Consensus 243 aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~-ga~~i~~d~~~~~~cDIliPaAl~n 321 (444)
T PRK14031 243 TAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKY-GCKYVEGARPWGEKGDIALPSATQN 321 (444)
T ss_pred HHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhc-CCEEcCCcccccCCCcEEeeccccc
Confidence 999999999999999999999999999999998766677766 56787774433 6788899999999999999999999
Q ss_pred ccChhhHHH-------HHHccCCCCCCHHHHHHHHHcCCeeechhhcccccceeehhhhhcccCCCCCCHHHHHHHHHHH
Q 006848 510 EIDQSDAIN-------LVNSGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEA 582 (629)
Q Consensus 510 ~It~enA~~-------lI~eGAN~P~TpeA~~iL~erGIl~iPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~ 582 (629)
+||.+||.+ +|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|++||+++
T Consensus 322 ~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~~~ 401 (444)
T PRK14031 322 ELNGDDARQLVANGVIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSI 401 (444)
T ss_pred ccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHHHHH
Confidence 999999986 4668999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc--CCCCCCcccHHHHHhHHHHHHHHHHHHhcCCC
Q 006848 583 MKQTYQRALKAATDF--GYQKESPEALVHGAVISSFLTIAQAMTDQGCV 629 (629)
Q Consensus 583 m~~~~~~v~~~A~~~--g~~~~~~~~~~~aA~i~a~~rVa~Am~~~G~~ 629 (629)
|.++|+.+++.++++ ++ +||+|||++||.||++||..||+|
T Consensus 402 m~~~~~~v~~~~~~~~~~~------~~r~aA~~~a~~rva~a~~~~G~~ 444 (444)
T PRK14031 402 MKNIHEACVQYGTEADGYV------NYVKGANVAGFMKVAKAMMAQGIV 444 (444)
T ss_pred HHHHHHHHHHHHhccCCCC------CHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999988 45 899999999999999999999986
No 4
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-125 Score=1003.21 Aligned_cols=406 Identities=38% Similarity=0.646 Sum_probs=388.8
Q ss_pred CccHHHHHHHHHHHHHHHHhhCcccHHHHHHhcCCceEEEEEEeEEcCCCCEEEEEEEEEEecCCCCCCCCCeeeecCCC
Q 006848 207 EIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMN 286 (629)
Q Consensus 207 ~~~f~q~v~e~~~~~~~~~~~~p~y~~~~e~L~~Per~i~frvp~~~d~G~v~v~~GyRVqhs~alGPakGGlRfhp~vt 286 (629)
+++|.|++.++..++.+.. ..+ .++|+|++|+|+++|++||+||+|++++|+|||||||+++|||||||||||+||
T Consensus 1 ~~~~~~a~~~~~~~~~~~~-~~~---~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~ 76 (411)
T COG0334 1 ENEFEQAVKELEKALEPLY-LDE---GVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVT 76 (411)
T ss_pred CcHHHHHHHHHHHhhhhcc-Cch---hHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCC
Confidence 4689999999999988832 222 499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCCHHHHHHHHHH
Q 006848 287 LSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQ 366 (629)
Q Consensus 287 ~~evkaLA~~MT~KnALagLP~GGaKGGI~~DP~~~s~~El~R~~r~f~~eL~r~IGp~~DVpApDvGt~~rem~~m~d~ 366 (629)
++++++||+||||||||++||||||||||++||+.+|+.|+|||||+|+++|.++|||++|||||||||++++|+||+|+
T Consensus 77 ~~ev~~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~de 156 (411)
T COG0334 77 LEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDE 156 (411)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCC-CccccCCccccCCCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006848 367 YRRLAGHF-QGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 367 y~~~~g~~-~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaV 445 (629)
|+++.|.. +|++||||+++|||.+|++||||||+++++++++.++.+|+|+||+||||||||+++|++|++.|||||++
T Consensus 157 y~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~ 236 (411)
T COG0334 157 YSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAV 236 (411)
T ss_pred hhhhcCCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEE
Confidence 99999765 69999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCCCcccccccEEeecCCCCccChhhHHH----HHH
Q 006848 446 SDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAIN----LVN 521 (629)
Q Consensus 446 SDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~~----lI~ 521 (629)
||++|+|||++|||+++|. +.|+..+++.+| +++++++++++|++|||||+|||++|+||.+||.+ +|+
T Consensus 237 sds~g~i~~~~Gld~~~l~---~~~~~~~~v~~~----~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak~V~ 309 (411)
T COG0334 237 SDSKGGIYDEDGLDVEALL---ELKERRGSVAEY----AGAEYITNEELLEVDCDILIPCALENVITEDNADQLKAKIVV 309 (411)
T ss_pred EcCCCceecCCCCCHHHHH---HHhhhhhhHHhh----cCceEccccccccccCcEEcccccccccchhhHHHhhhcEEE
Confidence 9999999999999999974 666666777765 67999999999999999999999999999999986 688
Q ss_pred ccCCCCCCHHHHHHHHHcCCeeechhhcccccceeehhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 006848 522 SGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQK 601 (629)
Q Consensus 522 eGAN~P~TpeA~~iL~erGIl~iPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~ 601 (629)
||||||+|++|+++|.+|||+|+||+++|||||++|||||.||+++++||+|+|++||+++|.++|+.+++.++++++
T Consensus 310 EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~~~~~~-- 387 (411)
T COG0334 310 EGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAAKEYGV-- 387 (411)
T ss_pred eccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHHHhHHHHHHHHHHHHhcCCC
Q 006848 602 ESPEALVHGAVISSFLTIAQAMTDQGCV 629 (629)
Q Consensus 602 ~~~~~~~~aA~i~a~~rVa~Am~~~G~~ 629 (629)
++|.|||++||+||++||.+||++
T Consensus 388 ----~~r~aA~~~a~~Rva~Am~~~G~~ 411 (411)
T COG0334 388 ----DLRTAAYILAFERVADAMKARGWY 411 (411)
T ss_pred ----CHHHHHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999985
No 5
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-121 Score=994.53 Aligned_cols=428 Identities=50% Similarity=0.914 Sum_probs=411.9
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHhhCcccHH--HHHHhcCCceEEEEEEeEEcCCCCEEEEEEEEEEec
Q 006848 192 TAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVN--IMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFS 269 (629)
Q Consensus 192 ~~~~~~~~~~~~~p~~~~f~q~v~e~~~~~~~~~~~~p~y~~--~~e~L~~Per~i~frvp~~~d~G~v~v~~GyRVqhs 269 (629)
+++++++.+.+|+|+|+||+|++++++++++++++.+|.|.. ++++|++|+|+|+|++||+||+|++++|+|||||||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~ 85 (445)
T PRK09414 6 YLESVLEQVKKRNPGQPEFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFN 85 (445)
T ss_pred HHHHHHHHHHhhCcCCchHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEec
Confidence 678999999999999999999999999999999999999985 999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhhcCCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcC
Q 006848 270 QALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLP 349 (629)
Q Consensus 270 ~alGPakGGlRfhp~vt~~evkaLA~~MT~KnALagLP~GGaKGGI~~DP~~~s~~El~R~~r~f~~eL~r~IGp~~DVp 349 (629)
+++||+||||||||+++++|+++||++|||||||+|||||||||||++||+.+|+.|||||||+|+++|.++|||++|||
T Consensus 86 ~~~GPakGG~R~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~Dip 165 (445)
T PRK09414 86 SAIGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVP 165 (445)
T ss_pred CCCcCCCCceeecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHH
Q 006848 350 SEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAM 429 (629)
Q Consensus 350 ApDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~ 429 (629)
||||||+++||+||+|+|++++++..|++||||+.+|||.+|+++|||||++++++++++.+.+|+|+||+||||||||+
T Consensus 166 apDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~ 245 (445)
T PRK09414 166 AGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAI 245 (445)
T ss_pred ccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhc-CcccccccccCCeeEeCCCCcccccccEEeecCCC
Q 006848 430 HVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ-RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ 508 (629)
Q Consensus 430 ~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~-g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~ 508 (629)
++|++|++.|+|||+|||++|+||||+|||+++| .++|+.+ +++..|...+ ++++++++++|+++||||||||++
T Consensus 246 ~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L---~~~k~~~~~~l~~~~~~~-~~~~i~~~~i~~~d~DVliPaAl~ 321 (445)
T PRK09414 246 YAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKL---KEIKEVRRGRISEYAEEF-GAEYLEGGSPWSVPCDIALPCATQ 321 (445)
T ss_pred HHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHH---HHHHHhcCCchhhhhhhc-CCeecCCccccccCCcEEEecCCc
Confidence 9999999999999999999999999999999886 5667665 5787774332 578889999999999999999999
Q ss_pred CccChhhHHHH-------HHccCCCCCCHHHHHHHHHcCCeeechhhcccccceeehhhhhcccCCCCCCHHHHHHHHHH
Q 006848 509 NEIDQSDAINL-------VNSGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQE 581 (629)
Q Consensus 509 n~It~enA~~l-------I~eGAN~P~TpeA~~iL~erGIl~iPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~ 581 (629)
|+||++||.++ |+||||+|+||+|+++|++|||+|+||+++||||||+|||||.||.++++|++++|+++|++
T Consensus 322 n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~~ 401 (445)
T PRK09414 322 NELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHD 401 (445)
T ss_pred CcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHHH
Confidence 99999999764 66999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcC--CCCCCcccHHHHHhHHHHHHHHHHHHhcCCC
Q 006848 582 AMKQTYQRALKAATDFG--YQKESPEALVHGAVISSFLTIAQAMTDQGCV 629 (629)
Q Consensus 582 ~m~~~~~~v~~~A~~~g--~~~~~~~~~~~aA~i~a~~rVa~Am~~~G~~ 629 (629)
+|.++|.++++.+++++ + ++|+|||++||+||++||..||++
T Consensus 402 ~m~~~~~~~~~~~~~~~~~~------~~r~aA~~~a~~rv~~a~~~rG~~ 445 (445)
T PRK09414 402 IMKNIHHACVETAEEYGKPG------NYVAGANIAGFVKVADAMLAQGVI 445 (445)
T ss_pred HHHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 5 899999999999999999999986
No 6
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=6.4e-119 Score=965.98 Aligned_cols=404 Identities=27% Similarity=0.462 Sum_probs=392.7
Q ss_pred cHHHHHHHHHHHHHHHHhhCcccHHHHHHhcCCceEEEEEEeEEcCCCCEEEEEEEEEEecCCCCCCCCCeeeecCCCHH
Q 006848 209 EFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLS 288 (629)
Q Consensus 209 ~f~q~v~e~~~~~~~~~~~~p~y~~~~e~L~~Per~i~frvp~~~d~G~v~v~~GyRVqhs~alGPakGGlRfhp~vt~~ 288 (629)
.+++.++++++.++++++.+|. ++++|++|+|+++|+|||+||+|++++|+|||||||+++||+||||||||++|++
T Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~---~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ 78 (410)
T PLN02477 2 NALAATNRNFREAARLLGLDSK---LEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPD 78 (410)
T ss_pred CHHHHHHHHHHHHHHHcCCCHH---HHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHH
Confidence 3688999999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCCHHHHHHHHHHhh
Q 006848 289 IAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYR 368 (629)
Q Consensus 289 evkaLA~~MT~KnALagLP~GGaKGGI~~DP~~~s~~El~R~~r~f~~eL~r~IGp~~DVpApDvGt~~rem~~m~d~y~ 368 (629)
|+++||++|||||||++||||||||||++||+.+|+.|++|+||+|+++|.++|||++|||||||||+++||+||+++|+
T Consensus 79 ev~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~ 158 (410)
T PLN02477 79 EVNALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYS 158 (410)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccccCCccccCCCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 369 RLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 369 ~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++.|++++++||||+.+|||.+|+++|||||+++++++++++|.+|+|+||+||||||||+++|++|.+.|+|||+|||+
T Consensus 159 ~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 159 KFHGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred HhhCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCCCcccccccEEeecCCCCccChhhHHH----HHHccC
Q 006848 449 KGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAIN----LVNSGS 524 (629)
Q Consensus 449 ~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~~----lI~eGA 524 (629)
+|+||||+|||+++| .++|++++++..| |+++.++++++|..+||||+|||++|+||++||.+ +|+|||
T Consensus 239 ~G~iy~~~GLD~~~L---~~~k~~~g~l~~~----~~a~~i~~~e~l~~~~DvliP~Al~~~I~~~na~~i~ak~I~egA 311 (410)
T PLN02477 239 TGAVKNENGLDIPAL---RKHVAEGGGLKGF----PGGDPIDPDDILVEPCDVLIPAALGGVINKENAADVKAKFIVEAA 311 (410)
T ss_pred CCeEECCCCCCHHHH---HHHHHhcCchhcc----ccceEecCccceeccccEEeeccccccCCHhHHHHcCCcEEEeCC
Confidence 999999999999885 5677777888765 78889999999999999999999999999999986 799999
Q ss_pred CCCCCHHHHHHHHHcCCeeechhhcccccceeehhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 006848 525 NMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESP 604 (629)
Q Consensus 525 N~P~TpeA~~iL~erGIl~iPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~ 604 (629)
|+|+||+|+++|++|||+|+||+++||||||+|||||+||+++++|++++|+++|+++|.++|.++++.|+++++
T Consensus 312 N~p~t~ea~~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~----- 386 (410)
T PLN02477 312 NHPTDPEADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNC----- 386 (410)
T ss_pred CCCCCHHHHHHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccHHHHHhHHHHHHHHHHHHhcCC
Q 006848 605 EALVHGAVISSFLTIAQAMTDQGC 628 (629)
Q Consensus 605 ~~~~~aA~i~a~~rVa~Am~~~G~ 628 (629)
++|+|||++|++||++||..||+
T Consensus 387 -~~r~aA~~~a~~rv~~a~~~rG~ 409 (410)
T PLN02477 387 -SLRMGAFTLGVNRVARATVLRGW 409 (410)
T ss_pred -CHHHHHHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999996
No 7
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-113 Score=912.60 Aligned_cols=456 Identities=42% Similarity=0.670 Sum_probs=416.9
Q ss_pred hhhhhHHHHHHHHhhccchhhhcccchhHHHHhhhhHHHHHHHHHhhCCCCccHHHHHHHHHHH--HHHHHhhCcccHHH
Q 006848 157 HNNSLLHKEALRLQMASKDKIIADKPIYVKALMSKTAGSIVEAALKRDPHEIEFIQSVQESLHA--LERVIAKNSHYVNI 234 (629)
Q Consensus 157 h~~~~~h~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~f~q~v~e~~~~--~~~~~~~~p~y~~~ 234 (629)
|.++++|++|++++.+.+++ ...|.|++.+++.+ ++.+++|.|+..|.+.+ ....++++|.|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~k~~--~~~p~~~~~v~~~~-----------~~~~~~~~~~~~e~v~~~e~~~~fek~~~~~~I 67 (514)
T KOG2250|consen 1 HTLFLLFAAAHQYHNSTKDM--ADSPTFLKMVESMY-----------APAAIEFQQALAEDVLSLELSSKFEKSPLYTAI 67 (514)
T ss_pred CchHHHHHHHHHhhhccccc--ccChHHHHHHHhhc-----------cccchhhhhhhHHHHhcchhhhhhhhhhHhhhh
Confidence 56789999999999999988 88998887664432 38899999999999999 78999999999999
Q ss_pred HHHhcCCceEEEEEEeEEcCCCCEEEEEEEEEEecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhhcCCCCCCCceEE
Q 006848 235 MERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGG 314 (629)
Q Consensus 235 ~e~L~~Per~i~frvp~~~d~G~v~v~~GyRVqhs~alGPakGGlRfhp~vt~~evkaLA~~MT~KnALagLP~GGaKGG 314 (629)
+.+|..|+|+++|++||.+|+|+.+|++||||||+.++||+||||||||+||+|++++||+.||||||++++||||||||
T Consensus 68 l~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaKGG 147 (514)
T KOG2250|consen 68 LFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAKGG 147 (514)
T ss_pred hhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCc
Q 006848 315 SDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEA 394 (629)
Q Consensus 315 I~~DP~~~s~~El~R~~r~f~~eL~r~IGp~~DVpApDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eA 394 (629)
|.+||+++|+.|++|+||+||.+|.+||||++|||||||||++|||+||+++|++..|++.+++||||+.||||.+|++|
T Consensus 148 i~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~A 227 (514)
T KOG2250|consen 148 ILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEA 227 (514)
T ss_pred cccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHcC--CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhh
Q 006848 395 TGYGLVFFAQLILADMN--KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g--~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~ 472 (629)
|||||+|+++.++++++ .+++|+||+||||||||++++++|++.|+|||+|||++|+|+||+|||.++|. +++.+
T Consensus 228 TG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~---~~~~~ 304 (514)
T KOG2250|consen 228 TGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELL---DLADE 304 (514)
T ss_pred cchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHH---HHHHh
Confidence 99999999999999988 89999999999999999999999999999999999999999999999999974 45556
Q ss_pred cCcccccc---cccCCeeEeCCCCcccccccEEeecCCCCccChhhHHH-------HHHccCCCCCCHHHHHHHHHcCCe
Q 006848 473 QRSLRDYS---KTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAIN-------LVNSGSNMPCTPEAVDVLKKANVL 542 (629)
Q Consensus 473 ~g~l~~~~---~~~p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~~-------lI~eGAN~P~TpeA~~iL~erGIl 542 (629)
+++++.|. ..+++.....+-.+|..+||||+|||++|+||.+||.. +|+||||||+||+|+++|+++||+
T Consensus 305 k~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~gv~ 384 (514)
T KOG2250|consen 305 KKTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKAGVL 384 (514)
T ss_pred hccccccccccccCccccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhCCeE
Confidence 66666652 11222111112245678999999999999999999975 577899999999999999999999
Q ss_pred eechhhcccccceeehhhhhcccC-------CCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHcC--CCCCCcccHHH
Q 006848 543 IAPAMAAGAGGVVAGELELNQECN-------MVHWSPEDFESKLQEAMKQTYQRA----LKAATDFG--YQKESPEALVH 609 (629)
Q Consensus 543 ~iPD~~aNAGGVivS~~E~~qN~~-------~~~ws~eeV~~rL~~~m~~~~~~v----~~~A~~~g--~~~~~~~~~~~ 609 (629)
++||+.||+|||+||||||+||++ .+.|++|.|+..|...+...+... ++.+++++ ....-+.+++.
T Consensus 385 i~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~v~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~ 464 (514)
T KOG2250|consen 385 IIPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLASVQENLSRKQGKANLEPAAEFKDRIQGTSEKDLVH 464 (514)
T ss_pred EechhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHHHHHHHHHhccCcccchHHHhhhhhcCCCchHHhh
Confidence 999999999999999999999999 678999999999999888888888 77776655 33334669999
Q ss_pred HHhHHHHHHHHHHHHhcCC
Q 006848 610 GAVISSFLTIAQAMTDQGC 628 (629)
Q Consensus 610 aA~i~a~~rVa~Am~~~G~ 628 (629)
+|++++|.|||+||..+|.
T Consensus 465 gal~~~~~kva~ai~~~g~ 483 (514)
T KOG2250|consen 465 GALIATFNKVARAITDQGD 483 (514)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999985
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=1.3e-69 Score=623.73 Aligned_cols=360 Identities=17% Similarity=0.208 Sum_probs=326.4
Q ss_pred HHHHHhcCCceEEEEEEeEEcCCCCEEEEEEEEEEecCCCCCCCCCeeeecC-----------CCHHHHHHHHHHhhhhh
Q 006848 233 NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPS-----------MNLSIAKFLGFEQTLKN 301 (629)
Q Consensus 233 ~~~e~L~~Per~i~frvp~~~d~G~v~v~~GyRVqhs~alGPakGGlRfhp~-----------vt~~evkaLA~~MT~Kn 301 (629)
.+++.|..|++.+.+.+|+ | ..|+|||++|+.+ ++|||||||+ ++.+|+.+||.+||+||
T Consensus 464 ~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~tqt~KN 534 (1002)
T PTZ00324 464 SFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLASTQLLKN 534 (1002)
T ss_pred HHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHHHHHhc
Confidence 4788899999999999998 5 6799999999999 9999999998 88999999999999999
Q ss_pred hcCCCCCCCceEEEecCCCCCCH---HHHHHHHHHHHHHHHhhcCCCCCc-----------CCCCCCCCHHHHHHHHHHh
Q 006848 302 ALSPYKLGGAAGGSDFDPKGKSD---NEIMRFCQSFMNEIHRYLGPDKDL-----------PSEEMGVGTREMGYLFGQY 367 (629)
Q Consensus 302 ALagLP~GGaKGGI~~DP~~~s~---~El~R~~r~f~~eL~r~IGp~~DV-----------pApDvGt~~rem~~m~d~y 367 (629)
| +||+|||||||.+||+..++ .|++|++++|+++|...|||+.|| ||||+||+++.|+|+ ++|
T Consensus 535 a--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~mdwa-~~~ 611 (1002)
T PTZ00324 535 K--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMDWA-ALH 611 (1002)
T ss_pred C--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHHHH-HHH
Confidence 8 99999999999999998887 899999999999999999999999 999999999999999 999
Q ss_pred hhhhcCC--CccccCCccccCCCCCCC-CcchHHHHHHHHHHHHHcCCCCCCcEEEEec--CccHHHHHHHHHHHCCCEE
Q 006848 368 RRLAGHF--QGSFTGPRIFWSGSSLRT-EATGYGLVFFAQLILADMNKELKGLRCVVSG--SGKIAMHVLEKLIAYGAIP 442 (629)
Q Consensus 368 ~~~~g~~--~g~vTGKp~~~GGs~~r~-eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG--fGNVG~~aA~~L~e~GAkV 442 (629)
.+.+|.. .+++||||+.+||+.++. ++||+||+++++++++++|.++++.||++|| ||+||++.++++. +||
T Consensus 612 s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~lls~---~kl 688 (1002)
T PTZ00324 612 AKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLLSK---EKT 688 (1002)
T ss_pred HHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHHhC---CEE
Confidence 9999976 689999999999999987 9999999999999999999999999999999 9999999999864 799
Q ss_pred EEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccccc------cc-----------CCeeEe-----CCCCc---ccc
Q 006848 443 VSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TY-----------ARSKYY-----DEAKP---WNE 497 (629)
Q Consensus 443 VaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~------~~-----------p~a~~i-----~~~ei---~~~ 497 (629)
|||+|.+|++|||+|||.++|. .++..++++.+|.. +| |+.+.+ ..+++ +..
T Consensus 689 VAv~D~~G~~~DP~GLd~~EL~---rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~~l~~~~ 765 (1002)
T PTZ00324 689 VGIVDGSGVLHDPEGLNREELR---RLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFHLLPYS 765 (1002)
T ss_pred EEEEcCCCEEECCCCCCHHHHH---HHHHcCCCcccCchhhccCCCceeecccccccCCccceeccccccchhhccccCC
Confidence 9999999999999999999974 44555667765521 11 322222 22333 478
Q ss_pred cccEEeecCC-CCccChhhHH------------HHHHccCCCCCCHHHHHHHHHcCCeeechhhcccccceeehhhhhcc
Q 006848 498 RCDVAFPCAS-QNEIDQSDAI------------NLVNSGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQE 564 (629)
Q Consensus 498 ~cDIliPcA~-~n~It~enA~------------~lI~eGAN~P~TpeA~~iL~erGIl~iPD~~aNAGGVivS~~E~~qN 564 (629)
+||||+||+. ++.||++|+. ++|+||||+|+||+|+.+|+++||+++||+++|+|||++||+||+||
T Consensus 766 ~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~laNsGGV~~S~~Evl~~ 845 (1002)
T PTZ00324 766 DADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDASANKGGVTSSSLEVLAA 845 (1002)
T ss_pred CccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcchhcCCCcEeeHHHHHhc
Confidence 9999999998 9999999992 27999999999999999999999999999999999999999999999
Q ss_pred cC------------------CCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHhHHHH
Q 006848 565 CN------------------MVHWS--PEDFESKLQEAMKQTYQRALKAATDFGYQKESPEALVHGAVISSF 616 (629)
Q Consensus 565 ~~------------------~~~ws--~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~~~~~~aA~i~a~ 616 (629)
++ ..+|+ .+||.++|++.|...|+.+++.+++.++ +++++|+.+..
T Consensus 846 l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~~L~~~a~~ef~~i~~~~~~~~~------~~r~asd~lS~ 911 (1002)
T PTZ00324 846 LALSDEEFAEHMCVKDATDAPEFYKKYVKEILDRIEENARLEFNAIWREELRTGK------PRCLLADVLSR 911 (1002)
T ss_pred cccchhhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CHHHHHHHHHH
Confidence 98 78899 8999999999999999999999998888 89999998763
No 9
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=6.9e-69 Score=546.62 Aligned_cols=246 Identities=46% Similarity=0.819 Sum_probs=234.2
Q ss_pred cCCccccCCCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCC
Q 006848 379 TGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGF 458 (629)
Q Consensus 379 TGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGL 458 (629)
||||+.+|||.+|++||||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+|||++|+||||+||
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhHHHHHHhhcCc-ccccccccCCeeEeCCCCcccccccEEeecCCCCccChhhHHH-------HHHccCCCCCCH
Q 006848 459 DYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAIN-------LVNSGSNMPCTP 530 (629)
Q Consensus 459 D~~~L~~l~~~k~~~g~-l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~~-------lI~eGAN~P~Tp 530 (629)
|+++|..+.+++..+++ +..|...+|++++++++++|+.+||||+|||++|+||.+||.+ +|+||||+|+||
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~ 160 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA 160 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCH
Confidence 99999888888877665 6777667778899999999999999999999999999999976 467999999999
Q ss_pred HHHHHHHHcCCeeechhhcccccceeehhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHH
Q 006848 531 EAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESPEALVHG 610 (629)
Q Consensus 531 eA~~iL~erGIl~iPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~~~~~~a 610 (629)
+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|++.|.++|+++++.+++++. +.+||+|
T Consensus 161 ~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~----~~~lr~a 236 (254)
T cd05313 161 EAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKKYGD----PPDLVAG 236 (254)
T ss_pred HHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999992 1289999
Q ss_pred HhHHHHHHHHHHHHhcCC
Q 006848 611 AVISSFLTIAQAMTDQGC 628 (629)
Q Consensus 611 A~i~a~~rVa~Am~~~G~ 628 (629)
||++||+||++||..||+
T Consensus 237 A~~~a~~rv~~a~~~rG~ 254 (254)
T cd05313 237 ANIAGFLKVADAMLAQGV 254 (254)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999999996
No 10
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=4.2e-59 Score=473.03 Aligned_cols=233 Identities=33% Similarity=0.558 Sum_probs=215.9
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHcCC-CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHh
Q 006848 386 SGSSLRTEATGYGLVFFAQLILADMNK-ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKIS 464 (629)
Q Consensus 386 GGs~~r~eATG~GV~~~~~~~l~~~g~-~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~ 464 (629)
|||.+|.++|||||++++++++++++. +++|+||+||||||||+++|++|++.|++||+|||++|+||||+|||+++|
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l- 79 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEEL- 79 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHH-
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHH-
Confidence 799999999999999999999999875 499999999999999999999999999999999999999999999999886
Q ss_pred HHHHHHhhcCc-ccccccccC-CeeEeCCC-CcccccccEEeecCCCCccChhhHHH-------HHHccCCCCCCHHHHH
Q 006848 465 FLRDIKSQQRS-LRDYSKTYA-RSKYYDEA-KPWNERCDVAFPCASQNEIDQSDAIN-------LVNSGSNMPCTPEAVD 534 (629)
Q Consensus 465 ~l~~~k~~~g~-l~~~~~~~p-~a~~i~~~-ei~~~~cDIliPcA~~n~It~enA~~-------lI~eGAN~P~TpeA~~ 534 (629)
.+++++.+. +..|....+ ++++++++ ++|+++||||+|||++|+||.+|+.+ +|+||||+|+||+|++
T Consensus 80 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~ 157 (244)
T PF00208_consen 80 --LRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE 157 (244)
T ss_dssp --HHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH
T ss_pred --HHHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH
Confidence 556777776 877743333 57888874 89999999999999999999999982 6779999999999999
Q ss_pred HHHHcCCeeechhhcccccceeehhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHhHH
Q 006848 535 VLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESPEALVHGAVIS 614 (629)
Q Consensus 535 iL~erGIl~iPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~~~~~~aA~i~ 614 (629)
+|++|||+|+||+++|+||||+||+||+||+++++|++++|.++++++|.++++++++.|+++++ ++++||+++
T Consensus 158 ~L~~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~m~~~~~~v~~~a~~~~~------~~~~aA~~~ 231 (244)
T PF00208_consen 158 ILRERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLEEIMDRAFKRVLERAEEEGI------SLRQAAYIL 231 (244)
T ss_dssp HHHHTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SHHHHHHHH
T ss_pred HHHHCCCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHhcC
Q 006848 615 SFLTIAQAMTDQG 627 (629)
Q Consensus 615 a~~rVa~Am~~~G 627 (629)
|++||++||+.||
T Consensus 232 A~~rv~~a~~~rG 244 (244)
T PF00208_consen 232 AFERVAAAMKLRG 244 (244)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999998
No 11
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=2e-55 Score=441.79 Aligned_cols=223 Identities=28% Similarity=0.468 Sum_probs=212.5
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhH
Q 006848 386 SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISF 465 (629)
Q Consensus 386 GGs~~r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~ 465 (629)
|||.+|+++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|++||+|+|++|++|||+|||+++|
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l-- 78 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPAL-- 78 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHH--
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred HHHHHhhcCcccccccccCCeeEeCCCCcccccccEEeecCCCCccChhhHHH----HHHccCCCCCCHHHHHHHHHcCC
Q 006848 466 LRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAIN----LVNSGSNMPCTPEAVDVLKKANV 541 (629)
Q Consensus 466 l~~~k~~~g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~~----lI~eGAN~P~TpeA~~iL~erGI 541 (629)
.++++..+++..| +++++++++++|+.+||||+|||++|+||++++.+ +|+||||+|+||+|+++|++|||
T Consensus 79 -~~~~~~~g~l~~~----~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~rGi 153 (227)
T cd01076 79 -LAYKKEHGSVLGF----PGAERITNEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHERGV 153 (227)
T ss_pred -HHHHHhcCCcccC----CCceecCCccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHHCCC
Confidence 5667777888765 66778889999999999999999999999999986 68999999999999999999999
Q ss_pred eeechhhcccccceeehhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHhHHHHHHHHH
Q 006848 542 LIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESPEALVHGAVISSFLTIAQ 621 (629)
Q Consensus 542 l~iPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~~~~~~aA~i~a~~rVa~ 621 (629)
+|+||+++|||||++||+||.||++++.|++++|.+++++.|.+++.++++.|+++++ +++++|+++|++||++
T Consensus 154 ~~~PD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a~~~~~------~~~~aA~~~a~~rl~~ 227 (227)
T cd01076 154 LVVPDILANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETAEKYGV------DLRTAAYVLALERVAE 227 (227)
T ss_pred EEEChHHhcCcchhhhHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCc------CHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999998 8999999999999973
No 12
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=3.9e-55 Score=437.10 Aligned_cols=213 Identities=28% Similarity=0.452 Sum_probs=200.1
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhc
Q 006848 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (629)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~ 473 (629)
||||||++++++++++++.+|+|+||+||||||||+++|++|.+.|++||+|||++|+|||| |||++++ .+++...
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l---~~~~~~~ 76 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEEL---INYAVAL 76 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHH---HHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999 9999886 3445555
Q ss_pred CcccccccccCCeeEeCCCCcccccccEEeecCCCCccChhhHHH----HHHccCCCCCCHHHHHHHHHcCCeeechhhc
Q 006848 474 RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAIN----LVNSGSNMPCTPEAVDVLKKANVLIAPAMAA 549 (629)
Q Consensus 474 g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~~----lI~eGAN~P~TpeA~~iL~erGIl~iPD~~a 549 (629)
+++..| |.++.++++++|+.+||||+|||++|+||+++|.+ +|+||||+|+|++++++|++|||+|+||+++
T Consensus 77 ~~~~~~----~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd~~~ 152 (217)
T cd05211 77 GGSARV----KVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVA 152 (217)
T ss_pred CCcccc----CcccccCcccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEEChHHh
Confidence 565544 55667788999999999999999999999999986 6889999999999999999999999999999
Q ss_pred ccccceeehhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHhHHHHHHHH
Q 006848 550 GAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESPEALVHGAVISSFLTIA 620 (629)
Q Consensus 550 NAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~~~~~~aA~i~a~~rVa 620 (629)
|+|||++||+||.||.++++|++++|++++++.|.++|.++++.|+++++ ++++|||++|++|||
T Consensus 153 NaGGvi~s~~E~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~------~~r~aA~~~a~~rva 217 (217)
T cd05211 153 NAGGVIVSYFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGV------TMRAAANILAFERIA 217 (217)
T ss_pred cCCCeEeEHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc------CHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998 899999999999986
No 13
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=2.4e-45 Score=341.07 Aligned_cols=131 Identities=41% Similarity=0.716 Sum_probs=125.1
Q ss_pred CceEEEEEEeEEcCCCCEEEEEEEEEEecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhhcCCCCCCCceEEEecCCC
Q 006848 241 PERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPK 320 (629)
Q Consensus 241 Per~i~frvp~~~d~G~v~v~~GyRVqhs~alGPakGGlRfhp~vt~~evkaLA~~MT~KnALagLP~GGaKGGI~~DP~ 320 (629)
|||+++|+|||++|+|....++|||||||+++||+||||||||++|.+|+++||++|||||||++||||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCCHHHHHHHHHHhhhhh
Q 006848 321 GKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLA 371 (629)
Q Consensus 321 ~~s~~El~R~~r~f~~eL~r~IGp~~DVpApDvGt~~rem~~m~d~y~~~~ 371 (629)
.+|..|+++++|+|+.+|.++|||+.|||||||||+++||+||+++|++++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~t 131 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRVT 131 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhcC
Confidence 999999999999999999999999999999999999999999999999874
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=100.00 E-value=1.3e-38 Score=313.99 Aligned_cols=191 Identities=20% Similarity=0.274 Sum_probs=169.6
Q ss_pred CCcchHHHHHHHHHHHHHc--CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHH
Q 006848 392 TEATGYGLVFFAQLILADM--NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~--g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~ 469 (629)
+.+|||||+++++++++++ +.+++|++|+|||||+||+++|+.|.+.|++|+ ++|.+ .+++ ..+
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~----------~~~~---~~~ 67 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADIN----------EEAV---ARA 67 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHH---HHH
Confidence 5799999999999999996 789999999999999999999999999999977 88862 2333 222
Q ss_pred HhhcCcccccccccCCeeEeCCCCcccccccEEeecCCCCccChhhHHH----HHHccCCCCCC-HHHHHHHHHcCCeee
Q 006848 470 KSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAIN----LVNSGSNMPCT-PEAVDVLKKANVLIA 544 (629)
Q Consensus 470 k~~~g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~~----lI~eGAN~P~T-peA~~iL~erGIl~i 544 (629)
++. + +++.++.++++..+|||++|||++++||.+++.+ +|++|||+|+| ++++++|+++||+|+
T Consensus 68 ~~~----------~-g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~ 136 (200)
T cd01075 68 AEL----------F-GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYA 136 (200)
T ss_pred HHH----------c-CCEEEcchhhccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEe
Confidence 221 1 3456677889989999999999999999999986 68899999999 999999999999999
Q ss_pred chhhcccccceeehhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHhHHHHHHHH
Q 006848 545 PAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESPEALVHGAVISSFLTIA 620 (629)
Q Consensus 545 PD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~~~~~~aA~i~a~~rVa 620 (629)
||+++|+|||++||+||+|+. ++++.++++.+ .+.+.++++.|+++++ +++++|+..|.+||+
T Consensus 137 Pd~~~NaGGv~~~~~e~~~~~------~~~~~~~~~~~-~~~~~~v~~~a~~~~~------~~~~aA~~~a~~r~~ 199 (200)
T cd01075 137 PDYVVNAGGLINVADELYGGN------EARVLAKVEAI-YDTLLEIFAQAKQDGI------TTLEAADRMAEERIA 199 (200)
T ss_pred CceeeeCcCceeehhHHhCCc------HHHHHHHHHHH-HHHHHHHHHHHHHhCc------CHHHHHHHHHHHHhc
Confidence 999999999999999999864 67899999765 8899999999999999 899999999999986
No 15
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.92 E-value=1.3e-25 Score=200.66 Aligned_cols=96 Identities=38% Similarity=0.650 Sum_probs=91.3
Q ss_pred ccEEeecCCCCccChhhHHH----HHHccCCCCCCHHHHHHHHHcCCeeechhhcccccceeehhhhhcccCCCCCCHHH
Q 006848 499 CDVAFPCASQNEIDQSDAIN----LVNSGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPED 574 (629)
Q Consensus 499 cDIliPcA~~n~It~enA~~----lI~eGAN~P~TpeA~~iL~erGIl~iPD~~aNAGGVivS~~E~~qN~~~~~ws~ee 574 (629)
||||+|||++++||.+++.+ +|+||||+|+|++++++|++|||+|+||+++|+|||++||+||.||.++ ++++
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~---~~e~ 79 (102)
T smart00839 3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR---TAEE 79 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC---CHHH
Confidence 99999999999999999986 7999999999999999999999999999999999999999999999764 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q 006848 575 FESKLQEAMKQTYQRALKAATDF 597 (629)
Q Consensus 575 V~~rL~~~m~~~~~~v~~~A~~~ 597 (629)
|.+++.+.|.+++.++++.|+++
T Consensus 80 v~~~~~~~i~~~~~~v~~~a~~~ 102 (102)
T smart00839 80 VFTDLSEIMRNALEEIFETAQKY 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998753
No 16
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=99.60 E-value=1.6e-13 Score=162.12 Aligned_cols=286 Identities=19% Similarity=0.210 Sum_probs=201.1
Q ss_pred EEEEEEEecCCCCCCCCCeeeecCCCH---HHHHHHHHHhhhhhhcCCCCCCCceEEEecC--CCCCCHHHHH----HHH
Q 006848 261 NRGFRVQFSQALGPCRGGLRFHPSMNL---SIAKFLGFEQTLKNALSPYKLGGAAGGSDFD--PKGKSDNEIM----RFC 331 (629)
Q Consensus 261 ~~GyRVqhs~alGPakGGlRfhp~vt~---~evkaLA~~MT~KnALagLP~GGaKGGI~~D--P~~~s~~El~----R~~ 331 (629)
++|+...|-.+ +.||||+. +-+. .|+..|+..|..||| .||=+|||||+... |.+-++.|++ +.+
T Consensus 785 vEGvHLRFg~V---ARGGLRws-DR~~D~rtEvlgLvKAQqvKNa--vIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Y 858 (1592)
T COG2902 785 VEGVHLRFGPV---ARGGLRWS-DRNQDFRTEVLGLVKAQQVKNA--VIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACY 858 (1592)
T ss_pred ceEEEeecccc---cccccccc-ccchhHHHHHHHHHHHHHhcCC--cccccCCcceEecccCCCCCchHHHHHhhHHHH
Confidence 67888887765 89999998 5555 499999999999995 79999999999886 5677887775 345
Q ss_pred HHHHHHHHh---hcCCCC------------C----cCCCCCCCC-HHHHHHHHHHhhhhhcCCCccccCCccccCCCCC-
Q 006848 332 QSFMNEIHR---YLGPDK------------D----LPSEEMGVG-TREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSL- 390 (629)
Q Consensus 332 r~f~~eL~r---~IGp~~------------D----VpApDvGt~-~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~- 390 (629)
+.|++.|.. .|.-+. | |-|+|=||- -.|++-.. .+-.| +.-|+-...|||.|
T Consensus 859 k~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTAtFsD~AN~v---A~~~~----fwl~DAFaSGgS~Gy 931 (1592)
T COG2902 859 KAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTATFSDIANSV---AREYG----FWLGDAFASGGSAGY 931 (1592)
T ss_pred HHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCcccHHHHHHHH---HHHhC----CChhhhhhcCCCCCC
Confidence 577777653 222221 1 457777772 23333211 11222 33334444455544
Q ss_pred ---CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC----ccHHHHHHHHHHHCCCEEEEEeCCCCceeCC-CCCCHHH
Q 006848 391 ---RTEATGYGLVFFAQLILADMNKELKGLRCVVSGS----GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDE-DGFDYMK 462 (629)
Q Consensus 391 ---r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf----GNVG~~aA~~L~e~GAkVVaVSDs~G~Iydp-dGLD~~~ 462 (629)
--..|++|+..+++.-++.+|.++....+.+.|- |.|+.+- .|...--+.||+-|-++-.+|| -++|...
T Consensus 932 dHK~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdmsGDVfgNg--MLLS~~irLiAAfDhrhIFiDP~pd~a~S~ 1009 (1592)
T COG2902 932 DHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGNG--MLLSKHIRLIAAFDHRHIFIDPNPDLAVSF 1009 (1592)
T ss_pred CccccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCCCccccccc--eeccccceeeEEecCCceeeCCCCCccccH
Confidence 3468999999999999999999988888877775 5666653 3444445689999999999999 6888766
Q ss_pred HhHHHHHHhhcCcccccccc--cCCeeE------------------------eCCCC------------cccccccEEee
Q 006848 463 ISFLRDIKSQQRSLRDYSKT--YARSKY------------------------YDEAK------------PWNERCDVAFP 504 (629)
Q Consensus 463 L~~l~~~k~~~g~l~~~~~~--~p~a~~------------------------i~~~e------------i~~~~cDIliP 504 (629)
++..+..+-.+.+..+|... .+|+-. .++.+ +|.-..|.+||
T Consensus 1010 ~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lspe~~~~lgi~~~~~~P~elitAILKapvDLLw~GGIgTYVk 1089 (1592)
T COG2902 1010 AERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSPEVIAALGIDKTELAPNELITAILKAPVDLLWNGGIGTYVK 1089 (1592)
T ss_pred HHHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCHHHHHHhCCCccccChHHHHHHHHcCchhhhccCCCceeEe
Confidence 54433333344556665421 111111 11111 23344678999
Q ss_pred cCCC-CccChhhHH------------HHHHccCCCCCCHHHHHHHHHcCCeeechhhcccccceeehhhh
Q 006848 505 CASQ-NEIDQSDAI------------NLVNSGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELEL 561 (629)
Q Consensus 505 cA~~-n~It~enA~------------~lI~eGAN~P~TpeA~~iL~erGIl~iPD~~aNAGGVivS~~E~ 561 (629)
|..+ |.+.+++|. ++|.||||.-+|..+.-.|..+|..+.-|++.|+|||.+|..|.
T Consensus 1090 a~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ~gRief~~~Ggr~ntDaidNsaGVd~SD~EV 1159 (1592)
T COG2902 1090 ASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDHEV 1159 (1592)
T ss_pred cCCCccchhhcccchhhccccceeceeEEeecccccccchhHHHHHHcCCeecchhhcccCCCcccchhh
Confidence 9985 788777774 26899999999999999999999999999999999999999996
No 17
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.23 E-value=6.8e-11 Score=125.95 Aligned_cols=172 Identities=20% Similarity=0.336 Sum_probs=113.9
Q ss_pred cEEEEecCccHHHHHHHHHHH--------CC--CEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCe
Q 006848 417 LRCVVSGSGKIAMHVLEKLIA--------YG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e--------~G--AkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a 486 (629)
.+|+||||||||+++++.|.+ .| .+|++|+|++|++|||+|+|++++ .++++..+++..|...+ +.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l---~~~~~~~~~~~~~~~~~-~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREA---KEVKENFGKLSNWGNDY-EV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHH---HHhhhccCchhhccccc-cc
Confidence 689999999999999999987 56 799999999999999999999875 56677767666552111 11
Q ss_pred eEeCCCCcc-cccccEEeecCCCCccChhhHH----HHHHcc-----CCC-CCC---HHHHHHHHHcCCeeechhhcccc
Q 006848 487 KYYDEAKPW-NERCDVAFPCASQNEIDQSDAI----NLVNSG-----SNM-PCT---PEAVDVLKKANVLIAPAMAAGAG 552 (629)
Q Consensus 487 ~~i~~~ei~-~~~cDIliPcA~~n~It~enA~----~lI~eG-----AN~-P~T---peA~~iL~erGIl~iPD~~aNAG 552 (629)
..++.++++ +.+|||+|.|+. .+++. +++.+| +|- |.+ .+..++.+++|+.+. +-+|.|
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~-----~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~--~ea~v~ 151 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTN-----DKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYL--FEATVM 151 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCC-----cHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEE--Eecccc
Confidence 122445566 579999998884 23443 356666 443 433 344456678888887 455554
Q ss_pred -cceeehhhhhccc---------CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006848 553 -GVVAGELELNQEC---------NM-VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKES 603 (629)
Q Consensus 553 -GVivS~~E~~qN~---------~~-~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~ 603 (629)
|+=+ +..+++. .+ +.=|-.-+..++++ ...|.+++..|++.|+.+..
T Consensus 152 ~GiPi--i~~l~~~l~g~~i~~i~GIlnGT~nyIl~~m~~--g~~f~eal~eAq~~GyaE~D 209 (336)
T PRK08374 152 AGTPI--IGLLRENLLGDTVKRIEAVVNATTTFILTRMEQ--GKTFEEALKEAQTLGIAERD 209 (336)
T ss_pred ccCCc--hHHHHhhccccceEEEEEEEechHHHHHHHhhC--CCCHHHHHHHHHHcCCCCCC
Confidence 3211 1111111 00 11234567777753 45799999999999996544
No 18
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.17 E-value=2e-10 Score=122.18 Aligned_cols=176 Identities=19% Similarity=0.189 Sum_probs=111.7
Q ss_pred cEEEEecCccHHHHHHHHHHH--------CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeE
Q 006848 417 LRCVVSGSGKIAMHVLEKLIA--------YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKY 488 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e--------~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~ 488 (629)
++|+|+||||||+.+++.|.+ .+.+||+|+|++|++|+++|||++++ .++++. +++..+ + ...
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l---~~~~~~-g~l~~~----~-~~~ 71 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKI---ISYKEK-GRLEEI----D-YEK 71 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHH---HHHHhc-CccccC----C-CCc
Confidence 379999999999999999987 46899999999999999999999886 344443 555433 1 111
Q ss_pred eCCCCcccccccEEeecCCCCccChhhHH----HHHHcc-----CC-CCCC---HHHHHHHHHcCCeeechhhcccccce
Q 006848 489 YDEAKPWNERCDVAFPCASQNEIDQSDAI----NLVNSG-----SN-MPCT---PEAVDVLKKANVLIAPAMAAGAGGVV 555 (629)
Q Consensus 489 i~~~ei~~~~cDIliPcA~~n~It~enA~----~lI~eG-----AN-~P~T---peA~~iL~erGIl~iPD~~aNAGGVi 555 (629)
++.++++..++||+|.|+..+ .+++++. +.+..| +| +|.. .+..++.+++|+.+.-.-.+.+|=-+
T Consensus 72 ~~~~~ll~~~~DVvVE~t~~~-~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pi 150 (326)
T PRK06392 72 IKFDEIFEIKPDVIVDVTPAS-KDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPL 150 (326)
T ss_pred CCHHHHhcCCCCEEEECCCCC-CcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccch
Confidence 233456677999999999764 3444443 345555 33 4443 34445667889888844322222222
Q ss_pred eehhhhhcccCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 006848 556 AGELELNQECNM-------VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESP 604 (629)
Q Consensus 556 vS~~E~~qN~~~-------~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~ 604 (629)
...+....-... +.=|-..+..++++ ...|.+++..|++.|+.+..|
T Consensus 151 i~~~~~~~~g~~i~~i~GilnGT~nyIl~~m~~--g~~f~~al~eAq~lG~aE~DP 204 (326)
T PRK06392 151 FSLRDYSTLPSRIKNFRGIVSSTINYVIRQEAN--GRGFLDVVKIAQKMGIAETNY 204 (326)
T ss_pred hhhhhhhcccCCEEEEEEEEeChHHHHHhhccC--CCCHHHHHHHHHHcCCCCCCC
Confidence 222211000000 11233556666653 457999999999999965443
No 19
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=99.15 E-value=2.1e-09 Score=131.93 Aligned_cols=348 Identities=16% Similarity=0.178 Sum_probs=219.7
Q ss_pred EEEEEEEecCCCCCCCCCeeeecCCC--HHHHHHHHHHhhhhhhcCCCCCCCceEEEecCCCCC--CHH----HHHHHHH
Q 006848 261 NRGFRVQFSQALGPCRGGLRFHPSMN--LSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGK--SDN----EIMRFCQ 332 (629)
Q Consensus 261 ~~GyRVqhs~alGPakGGlRfhp~vt--~~evkaLA~~MT~KnALagLP~GGaKGGI~~DP~~~--s~~----El~R~~r 332 (629)
|+|+.+.+... +.||||+.-... ..|+..|+..|..|| +.||=||||||+.++.... +++ |....++
T Consensus 723 ~eGvHLR~g~V---ARGGlRwSdR~eDfRtEvlgL~kaQ~vKN--avIvp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~ 797 (1528)
T PF05088_consen 723 FEGVHLRFGDV---ARGGLRWSDRPEDFRTEVLGLVKAQQVKN--AVIVPVGSKGGFVVKQLPDPADRDAWQAEGIACYK 797 (1528)
T ss_pred eEEEEcccccc---ccCcccccCCHHHHHHHHHHHHHHHHhcC--CcccCCCCceeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 68898888887 999999943221 258999999999999 5799999999999875433 444 3445778
Q ss_pred HHHHHHHhh---------cCC---------CCC-cCCCCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCC-
Q 006848 333 SFMNEIHRY---------LGP---------DKD-LPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRT- 392 (629)
Q Consensus 333 ~f~~eL~r~---------IGp---------~~D-VpApDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~- 392 (629)
.|+..|... +.| |-+ |-|.|=||- .+.=++.+-..-.| +.-|.-...|||.|-.
T Consensus 798 ~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGTA--tfSD~AN~ia~~~g----fWLgDAFASGGS~GYDH 871 (1528)
T PF05088_consen 798 TFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGTA--TFSDIANEIAAEYG----FWLGDAFASGGSAGYDH 871 (1528)
T ss_pred HHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCcc--hHHHHHHHHHHHcC----CCcchhhhcCCcCCCCc
Confidence 899988743 222 111 567888872 23333333322233 3344556678887643
Q ss_pred ---CcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHH--HHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHH
Q 006848 393 ---EATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVL--EKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLR 467 (629)
Q Consensus 393 ---eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA--~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~ 467 (629)
.-|++|.+.++|.-+.++|.++..-.+.|.|.|..+.=+- -.|...--|.||--|..---.||+- |++.- ..
T Consensus 872 K~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~P-D~~~S--f~ 948 (1528)
T PF05088_consen 872 KKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGMLLSRHIRLVAAFNHRHIFIDPDP-DPAAS--FA 948 (1528)
T ss_pred hhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccchhcccceeEEEecCcceeecCcCC-Chhhh--HH
Confidence 6899999999999999999999888888888644332110 1345556788999998877788886 65432 23
Q ss_pred HHHhh----cCccccccccc---CC------ee-----------------EeCCCC----cccccccEEeecCCCCcc--
Q 006848 468 DIKSQ----QRSLRDYSKTY---AR------SK-----------------YYDEAK----PWNERCDVAFPCASQNEI-- 511 (629)
Q Consensus 468 ~~k~~----~g~l~~~~~~~---p~------a~-----------------~i~~~e----i~~~~cDIliPcA~~n~I-- 511 (629)
+.|.- +.+-.+|.... .| ++ .+++++ ++..|+|+|-=-.++..|
T Consensus 949 ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~lS~e~r~~lgi~~~~~tp~eLi~aiL~apVDLlwnGGIGTYVKa 1028 (1528)
T PF05088_consen 949 ERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIPLSPEMRAALGIEKDSLTPDELIRAILKAPVDLLWNGGIGTYVKA 1028 (1528)
T ss_pred HHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCCCCHHHHHHhCCCCCccCHHHHHHHHhcCccceEecCCccceEec
Confidence 33321 11223332110 01 11 223333 457799998766555443
Q ss_pred -ChhhHH------------------HHHHccCCCCCCHHHHHHHHHcCCeeechhhcccccceeehhhh-h----ccc-C
Q 006848 512 -DQSDAI------------------NLVNSGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELEL-N----QEC-N 566 (629)
Q Consensus 512 -t~enA~------------------~lI~eGAN~P~TpeA~~iL~erGIl~iPD~~aNAGGVivS~~E~-~----qN~-~ 566 (629)
++.++. ++|.||+|.-+|..+.=-+..+|-.+=-|++=|||||-+|-.|. + ... .
T Consensus 1029 s~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNLG~TQ~gRiE~a~~GGriNtDaiDNSaGVd~SDhEVNiKIll~~~~~ 1108 (1528)
T PF05088_consen 1029 STESHADVGDKANDAVRVNGSELRAKVVGEGGNLGLTQRGRIEYALNGGRINTDAIDNSAGVDCSDHEVNIKILLNSLVR 1108 (1528)
T ss_pred CCCcccccccccCcceeechHHceEEEEecccccccchHHHHHHHHcCCccchhhhcccCCCcCccchhhHHHHHHHHHH
Confidence 222221 26889999999999988899999999999999999999998875 0 000 0
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-HHHHH----HHHHcCCCCCCcccHHHHHhHHHHHHHHHHHHhcCC
Q 006848 567 MVHWSPEDFESKLQEAMKQTY-QRALK----AATDFGYQKESPEALVHGAVISSFLTIAQAMTDQGC 628 (629)
Q Consensus 567 ~~~ws~eeV~~rL~~~m~~~~-~~v~~----~A~~~g~~~~~~~~~~~aA~i~a~~rVa~Am~~~G~ 628 (629)
.-..+.++=++-|. .|++-. +.|+. +.....+ ...+.+.++-.+.|+.+.+..+|.
T Consensus 1109 ~g~lt~~~Rn~lL~-~mtdeV~~lVL~~N~~Q~~alsl-----~~~~~~~~~~~~~r~~~~Le~~g~ 1169 (1528)
T PF05088_consen 1109 AGDLTRKERNKLLA-SMTDEVAELVLRDNYRQTLALSL-----AERRAAERLEEHQRLIERLEREGR 1169 (1528)
T ss_pred cCCCCHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHH-----HHHhhhccHHHHHHHHHHHHhcCC
Confidence 11246666555554 333322 22221 1111111 123455666777888888877764
No 20
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.74 E-value=9.3e-08 Score=102.20 Aligned_cols=173 Identities=22% Similarity=0.324 Sum_probs=109.6
Q ss_pred cEEEEecCccHHHHHHHHHHHC----------CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCe
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~----------GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a 486 (629)
.+|+|.|+|+||+.+++.|.+. +.+||+|+|++|++|+++|+|.+++ .+.+...+.+..| ++.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~---~~~~~~~~~~~~~----~~~ 75 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELA---LKVKEETGKLADY----PEG 75 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHH---HHHHhccCCcccC----ccc
Confidence 5899999999999999999865 6899999999999999999998775 3344444444333 211
Q ss_pred e-EeCCCCcc-cccccEEeecCCCCccChhhHH----HHHHcc-----CC-CCCC---HHHHHHHHHcCCeeechhhccc
Q 006848 487 K-YYDEAKPW-NERCDVAFPCASQNEIDQSDAI----NLVNSG-----SN-MPCT---PEAVDVLKKANVLIAPAMAAGA 551 (629)
Q Consensus 487 ~-~i~~~ei~-~~~cDIliPcA~~n~It~enA~----~lI~eG-----AN-~P~T---peA~~iL~erGIl~iPD~~aNA 551 (629)
. ..+.++++ +.++||++.|+..+.-+.+++. ..+..| +| .|.+ ++..+..+++|+.+.-.-...+
T Consensus 76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~ 155 (341)
T PRK06270 76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGG 155 (341)
T ss_pred cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeee
Confidence 1 11233444 4679999999987666544444 344555 44 5643 3344556788887763211111
Q ss_pred -------------ccceeehhhhhcccCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCc
Q 006848 552 -------------GGVVAGELELNQECNMVHWSPEDFESKL-QEAMKQTYQRALKAATDFGYQKESP 604 (629)
Q Consensus 552 -------------GGVivS~~E~~qN~~~~~ws~eeV~~rL-~~~m~~~~~~v~~~A~~~g~~~~~~ 604 (629)
|+-+. .++.+-| =|-.-+..++ ++ ...|.+++..|++.|+.+..|
T Consensus 156 glPii~~l~~~l~g~~I~-~I~GIln-----GT~nyIl~~m~~~--g~~f~~al~~Aq~~G~aE~DP 214 (341)
T PRK06270 156 AMPIINLAKETLAGNDIK-SIKGILN-----GTTNYILTRMEEE--GLSYEQALAEAQELGYAEADP 214 (341)
T ss_pred chhHHHHHHhhcccCceE-EEEEEEe-----CcHHHHHHHHhhc--CCCHHHHHHHHHHcCCCCCCC
Confidence 22111 1111111 2334566666 32 457999999999999965443
No 21
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.35 E-value=1.9e-06 Score=92.79 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=106.2
Q ss_pred cEEEEecCccHHHHHHHHHHHC--------C--CEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCe
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY--------G--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~--------G--AkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a 486 (629)
.+|+|.|||+||+.+++.|.+. | .+|++|+|+++.+++++|+|.+.+ + +.+.....+..|.
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~--l-~~~~~~~~~~~~~------ 73 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHL--L-RYGGGSCAIEKYI------ 73 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhh--h-hccccccchhhhh------
Confidence 5899999999999999999763 2 479999999999999999998663 2 1111111111110
Q ss_pred eEeCCCCcc--cccccEEeecCCCCccChhhHHHH----HHcc------CCCCCC---HHHHHHHHHcCCeeechhhccc
Q 006848 487 KYYDEAKPW--NERCDVAFPCASQNEIDQSDAINL----VNSG------SNMPCT---PEAVDVLKKANVLIAPAMAAGA 551 (629)
Q Consensus 487 ~~i~~~ei~--~~~cDIliPcA~~n~It~enA~~l----I~eG------AN~P~T---peA~~iL~erGIl~iPD~~aNA 551 (629)
+ ...+++. ..+.||+|.|+..+..+.++|..+ +..| +..|.+ ++..++.+++|+.|... ++-
T Consensus 74 ~-~~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yE--asV 150 (346)
T PRK06813 74 E-HHPEERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYS--GAT 150 (346)
T ss_pred c-cChHHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEe--eee
Confidence 0 0111222 347899999998888887888654 4444 444433 44556667899998844 433
Q ss_pred c-cc-eeehhhhhcccCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 006848 552 G-GV-VAGELELNQECNM-------VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESP 604 (629)
Q Consensus 552 G-GV-ivS~~E~~qN~~~-------~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~ 604 (629)
| |+ +...+....-... +.=|-..+..++.+ -...|.+++..|++.|+.+..|
T Consensus 151 ggGiPiI~~l~~~~~g~~I~~i~GIlNGT~NyIL~~m~~-~g~~f~eal~~Aq~lGyaE~DP 211 (346)
T PRK06813 151 AAALPTLDIGQFSLAGCHIEKIEGILNGTTNYILTKMNE-EDITFEEALKEAQSKGIAETNP 211 (346)
T ss_pred eeccchHHHHhhhcccCcEEEEEEEEechHHHHHhhhhh-cCCCHHHHHHHHHHcCCCCCCC
Confidence 3 22 1222211100000 01233445555531 1337999999999999965443
No 22
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.32 E-value=3.3e-06 Score=72.79 Aligned_cols=55 Identities=31% Similarity=0.337 Sum_probs=49.5
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+||+|++..+++..+..+.++++++++|+|+|++|+.+++.|.+.|.+.|.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5899999999999988888999999999999999999999999996555777765
No 23
>PLN02700 homoserine dehydrogenase family protein
Probab=98.11 E-value=1.6e-05 Score=86.55 Aligned_cols=183 Identities=21% Similarity=0.273 Sum_probs=107.5
Q ss_pred cEEEEecCccHHHHHHHHHHHC-------C--CEEEEEeCCCCceeCCC----CCCHHHHhHHHHHHhhcCccccccc--
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY-------G--AIPVSVSDAKGYLVDED----GFDYMKISFLRDIKSQQRSLRDYSK-- 481 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-------G--AkVVaVSDs~G~Iydpd----GLD~~~L~~l~~~k~~~g~l~~~~~-- 481 (629)
..|+|.|+||||+.+++.|.+. | .+|++|+||+|++++++ |||.+.+......+.+...+..|..
T Consensus 4 i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~~~ 83 (377)
T PLN02700 4 IPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGALA 83 (377)
T ss_pred EEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhhcc
Confidence 5789999999999999987653 3 58999999999999975 9998876433334444444443311
Q ss_pred ccCC--------eeEeCCCCcc-cccccEEeecCCCCccChhhHHHHHHcc------CCCCCCH--HHHHHHHHcCCeee
Q 006848 482 TYAR--------SKYYDEAKPW-NERCDVAFPCASQNEIDQSDAINLVNSG------SNMPCTP--EAVDVLKKANVLIA 544 (629)
Q Consensus 482 ~~p~--------a~~i~~~ei~-~~~cDIliPcA~~n~It~enA~~lI~eG------AN~P~Tp--eA~~iL~erGIl~i 544 (629)
..++ .+.++..+.. ..+.+|+|.|+... -+.+.....+..| |..|.+. +.-+.|+++|+.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ViVD~T~s~-~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~~~~~~~ 162 (377)
T PLN02700 84 GGCQVFNNSELSRKVIDIATLLGKSTGLVVVDCSASM-ETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAAHPRRIR 162 (377)
T ss_pred ccccccccccccchhhhHHHHhhccCCCEEEECCCCh-HHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHHcCCeEE
Confidence 0000 0011111122 45679999999752 2233444556666 4445432 23355667898888
Q ss_pred chhhcccccce--eehhh-hhc---ccCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 006848 545 PAMAAGAGGVV--AGELE-LNQ---ECNM----VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESP 604 (629)
Q Consensus 545 PD~~aNAGGVi--vS~~E-~~q---N~~~----~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~ 604 (629)
. =++-||-+ ...+. .+. +..+ +.=|-.-+..++++ ...|.+++..|++.|+.+..|
T Consensus 163 y--EatVgaGlPiI~tl~~ll~sGd~I~~I~GIlnGT~nyIl~~m~~--g~~fseal~eAq~~GyaEpDP 228 (377)
T PLN02700 163 H--ESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSELED--GKPFSEVVKQAKSLGYTEPDP 228 (377)
T ss_pred E--EeeeeeccchHHHHHHHhhccCCEEEEEEEEeChHHHHHHHHhc--CCCHHHHHHHHHHcCCCCCCC
Confidence 4 34444322 22221 110 0000 11234557777753 457999999999999976443
No 24
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.00 E-value=3.8e-05 Score=91.15 Aligned_cols=189 Identities=16% Similarity=0.201 Sum_probs=109.1
Q ss_pred HHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHC---------CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhh
Q 006848 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY---------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (629)
Q Consensus 402 ~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~---------GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~ 472 (629)
+++.+-+.+-.+-+-.+|+|.|||+||+.+++.|.+. ..+|++|+|+++.+++++|+|.+.+. +....
T Consensus 451 al~~LH~~f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~---~~~~~ 527 (819)
T PRK09436 451 ALRACHQSFFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWR---EELAE 527 (819)
T ss_pred HHHHHHHHHhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHH---HHHhh
Confidence 3333333333344678999999999999999998753 35799999999999999999986542 21111
Q ss_pred cCcccccccccCCeeEeCCCCcccccccEEeecCCCCccChhhHHHHHHcc------CCCCCC------HHHHHHHHHcC
Q 006848 473 QRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSG------SNMPCT------PEAVDVLKKAN 540 (629)
Q Consensus 473 ~g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~~lI~eG------AN~P~T------peA~~iL~erG 540 (629)
. ...+ ....+++...-...+.||+|.|+....+.. .....+..| +..|.+ ++..+..+++|
T Consensus 528 ~--~~~~----~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~-~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~ 600 (819)
T PRK09436 528 A--GEPF----DLDRLIRLVKEYHLLNPVIVDCTSSQAVAD-QYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSR 600 (819)
T ss_pred c--cCCC----CHHHHHHHHhhcCCCCCEEEECCCChHHHH-HHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcC
Confidence 1 0010 000011100012347799999997655432 334455555 445554 34445667899
Q ss_pred Ceeechhhcccccce-e-ehh-hhhc------ccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 006848 541 VLIAPAMAAGAGGVV-A-GEL-ELNQ------ECNM-VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESP 604 (629)
Q Consensus 541 Il~iPD~~aNAGGVi-v-S~~-E~~q------N~~~-~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~ 604 (629)
+.|.. =++.||-+ + ..+ +.++ ...+ +.=|-..+..++++ ...|.+++..|++.|+.+..|
T Consensus 601 ~~~~y--eatV~~giPii~~l~~~~~~g~~i~~i~GilnGT~nyIl~~~~~--g~~f~~al~~Aq~~GyaE~DP 670 (819)
T PRK09436 601 RKFLY--ETNVGAGLPVIETLQNLLNAGDELLKFEGILSGSLSFIFGKLDE--GMSFSEATRLAKEKGYTEPDP 670 (819)
T ss_pred CeEEE--eeeeccccchHHHHHHHHhccCcEEEEEEEEeChHHHHhhhhhc--CCCHHHHHHHHHHcCCCCCCC
Confidence 98884 34433221 1 111 1110 0000 11233456666644 347999999999999866443
No 25
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.66 E-value=0.00026 Score=84.04 Aligned_cols=184 Identities=14% Similarity=0.135 Sum_probs=104.1
Q ss_pred HHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHC--------C--CEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhh
Q 006848 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY--------G--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (629)
Q Consensus 403 ~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~--------G--AkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~ 472 (629)
++.+-+.+-.+-+-.+++|.|||+||+.+++.|.+. | .+|++|+|+++.+++++|+|...+. +....
T Consensus 445 v~~LH~~f~~~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~---~~~~~ 521 (810)
T PRK09466 445 IQGLHQSLFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRAL---AFFDD 521 (810)
T ss_pred HHHHHHHHhCcCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHH---hhHHh
Confidence 333333333344557899999999999999998763 3 5789999999999999999976642 11111
Q ss_pred cCcccccccccCCee-EeCCCCcc--cccccEEeecCCCCccChhhHHHHHHcc-----CCC-CCC---H---HHHHHHH
Q 006848 473 QRSLRDYSKTYARSK-YYDEAKPW--NERCDVAFPCASQNEIDQSDAINLVNSG-----SNM-PCT---P---EAVDVLK 537 (629)
Q Consensus 473 ~g~l~~~~~~~p~a~-~i~~~ei~--~~~cDIliPcA~~n~It~enA~~lI~eG-----AN~-P~T---p---eA~~iL~ 537 (629)
.. ..+ ... .+ +.+- ..+.+|+|.|+.+..+.. .....+..| ||- +.+ . +..+..+
T Consensus 522 ~~--~~~-----~~~~~~--e~i~~~~~~~~vvVd~t~~~~~~~-~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~ 591 (810)
T PRK09466 522 EA--VEW-----DEESLF--LWLRAHPYDELVVLDVTASEQLAL-QYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFA 591 (810)
T ss_pred hc--CCc-----cHHHHH--HHHhhcCCCCcEEEECCCChHHHH-HHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHH
Confidence 10 000 000 00 0111 233469999997553322 122455555 444 222 2 3335567
Q ss_pred HcCCeeechhhcccccceeehhhhhcccC--C---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 006848 538 KANVLIAPAMAAGAGGVVAGELELNQECN--M---------VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESP 604 (629)
Q Consensus 538 erGIl~iPD~~aNAGGVivS~~E~~qN~~--~---------~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~ 604 (629)
++|+.|... ++.||-+=. +..++++. + +.=|-..+..++++ ...|.+++..|++.|+.+..|
T Consensus 592 ~~~~~~~yE--asV~~giPi-i~~l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~--g~~f~eal~~Aq~~GyaE~DP 664 (810)
T PRK09466 592 KTGRHWLYN--ATVGAGLPI-NHTVRDLRNSGDSILAISGIFSGTLSWLFLQFDG--SVPFSELVDQAWQQGLTEPDP 664 (810)
T ss_pred HcCCeEEEe--ceeeeccCh-HHHHHHHHhccCcEEEEEEEEccHHHHHHHHHhc--CCCHHHHHHHHHHcCCCCCCC
Confidence 889988843 444432211 11111110 0 01122345555554 348999999999999975443
No 26
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00041 Score=74.50 Aligned_cols=167 Identities=20% Similarity=0.266 Sum_probs=102.7
Q ss_pred CcEEEEecCccHHHHHHHHHHHC----------CCEEEEEeCCCCceeC-CCCCCHHHHhHHHHHHhhcCcccccccccC
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVD-EDGFDYMKISFLRDIKSQQRSLRDYSKTYA 484 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~----------GAkVVaVSDs~G~Iyd-pdGLD~~~L~~l~~~k~~~g~l~~~~~~~p 484 (629)
-.+|.|.|||+||+.+++.|.+. ..+|++|+|+++..+. -++.+. ..+...+.+
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~-------- 67 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA-------EVWTTDGAL-------- 67 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch-------hhheecccc--------
Confidence 36899999999999999999984 3589999999998774 333332 111111110
Q ss_pred CeeEeCCCCcccccccEEeecCCCCccChhhHH---HHHHcc------CCCCCCHH---HHHHHHHcCCeeechhhcccc
Q 006848 485 RSKYYDEAKPWNERCDVAFPCASQNEIDQSDAI---NLVNSG------SNMPCTPE---AVDVLKKANVLIAPAMAAGAG 552 (629)
Q Consensus 485 ~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~---~lI~eG------AN~P~Tpe---A~~iL~erGIl~iPD~~aNAG 552 (629)
. .+.+-++..+.||++++...+.-+.+++. +.+.+| |..|.+.. -.+..+++|+.+. |=|+-|
T Consensus 68 --~-~~~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~--yEAtV~ 142 (333)
T COG0460 68 --S-LGDEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLL--YEATVG 142 (333)
T ss_pred --c-ccHhhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEE--EEeeec
Confidence 0 11233457789999999999877777532 245555 44455543 4456688888777 334433
Q ss_pred cceeehhhhhccc---CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 006848 553 GVVAGELELNQEC---NM-------VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESP 604 (629)
Q Consensus 553 GVivS~~E~~qN~---~~-------~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~~ 604 (629)
|=+=. +..+++. .. +.=|-..+..++.+.. ..|+++++.|++.|+.+..|
T Consensus 143 gGiPi-I~~lr~~l~g~~I~~i~GIlNGT~NyIlt~m~~~~-~~f~dal~eAq~lGyAE~DP 202 (333)
T COG0460 143 GGIPI-IKLLRELLAGDEILSIRGILNGTTNYILTRMEEGG-LSFEDALAEAQELGYAEADP 202 (333)
T ss_pred cCcch-HHHHHhhcccCceEEEEEEEeccHHHHHHHHHccC-CCHHHHHHHHHHcCCCCCCC
Confidence 32210 1111111 00 1234567777776532 28999999999999865443
No 27
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.48 E-value=0.00048 Score=67.20 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=48.7
Q ss_pred HHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCe
Q 006848 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (629)
Q Consensus 407 l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a 486 (629)
++..+..|.||+|+|.|||+||+.+|+.|..+|++ |.|+|. || +.. +...- ..|
T Consensus 14 ~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~-----DP----i~a---lqA~~------dGf------- 67 (162)
T PF00670_consen 14 MRATNLMLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEI-----DP----IRA---LQAAM------DGF------- 67 (162)
T ss_dssp HHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-S-----SH----HHH---HHHHH------TT--------
T ss_pred HhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEEC-----Ch----HHH---HHhhh------cCc-------
Confidence 34456789999999999999999999999999999 689997 55 222 22111 122
Q ss_pred eEeCCCCcccccccEEeecCCC-CccChhhHHH
Q 006848 487 KYYDEAKPWNERCDVAFPCASQ-NEIDQSDAIN 518 (629)
Q Consensus 487 ~~i~~~ei~~~~cDIliPcA~~-n~It~enA~~ 518 (629)
+..+-++.. ..+||+|-|+.. ++|+.+.-..
T Consensus 68 ~v~~~~~a~-~~adi~vtaTG~~~vi~~e~~~~ 99 (162)
T PF00670_consen 68 EVMTLEEAL-RDADIFVTATGNKDVITGEHFRQ 99 (162)
T ss_dssp EEE-HHHHT-TT-SEEEE-SSSSSSB-HHHHHH
T ss_pred EecCHHHHH-hhCCEEEECCCCccccCHHHHHH
Confidence 111112222 378999987654 6678876654
No 28
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.31 E-value=0.001 Score=69.93 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=75.4
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHh
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~ 471 (629)
+.+|+.|++. .+++..+.++.|++|.|.|+|.+|+.+|+.|...|++ |.|.|++ + +++. ....
T Consensus 130 ~~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~-V~v~~R~-----~-----~~~~---~~~~ 192 (287)
T TIGR02853 130 SIPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGAR-VFVGARS-----S-----ADLA---RITE 192 (287)
T ss_pred cHhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCE-EEEEeCC-----H-----HHHH---HHHH
Confidence 3567777643 4455566799999999999999999999999999998 5677762 2 1221 1111
Q ss_pred hcCcccccccccCCeeEeCCCCc--ccccccEEeecCCCCccChhhHHH-----HHHccCCCC-CCHHHHHHHHHcCCee
Q 006848 472 QQRSLRDYSKTYARSKYYDEAKP--WNERCDVAFPCASQNEIDQSDAIN-----LVNSGSNMP-CTPEAVDVLKKANVLI 543 (629)
Q Consensus 472 ~~g~l~~~~~~~p~a~~i~~~ei--~~~~cDIliPcA~~n~It~enA~~-----lI~eGAN~P-~TpeA~~iL~erGIl~ 543 (629)
. +...++.+++ +-.++||+|-|.....++.+.... +|..-+..| -|+- +..+++|+..
T Consensus 193 ~------------g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a 258 (287)
T TIGR02853 193 M------------GLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKA 258 (287)
T ss_pred C------------CCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEE
Confidence 0 1111111111 123899999998777777654332 233334445 2332 5678888766
Q ss_pred e
Q 006848 544 A 544 (629)
Q Consensus 544 i 544 (629)
+
T Consensus 259 ~ 259 (287)
T TIGR02853 259 L 259 (287)
T ss_pred E
Confidence 5
No 29
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.23 E-value=0.0056 Score=56.98 Aligned_cols=126 Identities=16% Similarity=0.108 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccc
Q 006848 401 FFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYS 480 (629)
Q Consensus 401 ~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~ 480 (629)
++++.++++.+.++++++|.|.|.|++|..+++.|.+.|...|.+.|+ +++ .+..+. +..+. ...
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r-----~~~-----~~~~~~---~~~~~-~~~- 68 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR-----TLE-----KAKALA---ERFGE-LGI- 68 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC-----CHH-----HHHHHH---HHHhh-ccc-
Confidence 344555556677789999999999999999999999997544777776 322 221111 11010 000
Q ss_pred cccCCeeEeCCCCcccccccEEeecCCCCccChhhH---HH------HHH-ccCCCCCCHHHHHHHHHcCCeeechh
Q 006848 481 KTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDA---IN------LVN-SGSNMPCTPEAVDVLKKANVLIAPAM 547 (629)
Q Consensus 481 ~~~p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA---~~------lI~-eGAN~P~TpeA~~iL~erGIl~iPD~ 547 (629)
.....+..+. -.++|++|-|+.....+.+.. .. ++. -+-+.+.| +..+.++++|+.++|..
T Consensus 69 ----~~~~~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~-~l~~~~~~~g~~~v~g~ 139 (155)
T cd01065 69 ----AIAYLDLEEL-LAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET-PLLKEARALGAKTIDGL 139 (155)
T ss_pred ----ceeecchhhc-cccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC-HHHHHHHHCCCceeCCH
Confidence 0011111122 247999999987665411111 11 111 12332334 77788899998887653
No 30
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.97 E-value=0.0026 Score=67.13 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=44.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+.+|+.| ++.++++..+.++.|++|.|.|+|.+|+.++..|..+|++ |.+.|+
T Consensus 131 s~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~-V~v~~r 183 (296)
T PRK08306 131 SIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGAN-VTVGAR 183 (296)
T ss_pred cHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence 4567777 3455666677889999999999999999999999999997 566776
No 31
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=96.92 E-value=0.13 Score=59.12 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCcchHHHHHH
Q 006848 323 SDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFF 402 (629)
Q Consensus 323 s~~El~R~~r~f~~eL~r~IGp~~DVpApDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~ 402 (629)
+.+|-..|...||..+.+.. |..-|==+|++.. .--.+.+.|+.-.. ++ .+--.-||-=+..+
T Consensus 221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~--naf~iL~kyr~~i~----~F----------nDDiQGTaaV~lAg 283 (559)
T PTZ00317 221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNN--HCFDLLERYQNKYR----CF----------NDDIQGTGAVIAAG 283 (559)
T ss_pred ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCc--cHHHHHHHhccCCC----Ee----------cccchhHHHHHHHH
Confidence 56788889999999998654 6666677888754 23346677764211 11 12234566666677
Q ss_pred HHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHH----CCC------EEEEEeCCCCceeCCCC--CCHHHHhHHHHHH
Q 006848 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA----YGA------IPVSVSDAKGYLVDEDG--FDYMKISFLRDIK 470 (629)
Q Consensus 403 ~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e----~GA------kVVaVSDs~G~IydpdG--LD~~~L~~l~~~k 470 (629)
+..+++-.|.+|+..||++.|.|..|..+|+.|.. .|. +=+.+.|++|-|++..+ ++..+..
T Consensus 284 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~------ 357 (559)
T PTZ00317 284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVP------ 357 (559)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHH------
Confidence 88888888999999999999999999999999874 787 45789999999998754 4433321
Q ss_pred hhcCccccccccc---CCeeEeCCCC-cccccccEEeecCC-CCccChhhHHH
Q 006848 471 SQQRSLRDYSKTY---ARSKYYDEAK-PWNERCDVAFPCAS-QNEIDQSDAIN 518 (629)
Q Consensus 471 ~~~g~l~~~~~~~---p~a~~i~~~e-i~~~~cDIliPcA~-~n~It~enA~~ 518 (629)
|+... ++....+-.+ +-.++.||||=++. .+.+|++-.+.
T Consensus 358 --------fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~ 402 (559)
T PTZ00317 358 --------FARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKT 402 (559)
T ss_pred --------HhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHH
Confidence 11100 0000001111 22567799999997 68999987665
No 32
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=96.79 E-value=0.039 Score=63.42 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=115.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCcchHHHHH
Q 006848 322 KSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVF 401 (629)
Q Consensus 322 ~s~~El~R~~r~f~~eL~r~IGp~~DVpApDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~ 401 (629)
.+.+|-..|...||+.+.+-+||+.-|-=+|++..-. --+.+.|+.-. .++ .+--..||-=+..
T Consensus 243 v~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~a--f~iL~ryr~~i----~~F----------nDDiQGTaaV~lA 306 (581)
T PLN03129 243 LTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNA--FRLLQRYRTTH----LCF----------NDDIQGTAAVALA 306 (581)
T ss_pred CchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCccH--HHHHHHhccCC----CEe----------ccccchHHHHHHH
Confidence 3456778899999999998889988888899986533 23667775211 111 1223457766777
Q ss_pred HHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHH-----CCC------EEEEEeCCCCceeCCCC--CCHHHHhHHHH
Q 006848 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA-----YGA------IPVSVSDAKGYLVDEDG--FDYMKISFLRD 468 (629)
Q Consensus 402 ~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e-----~GA------kVVaVSDs~G~IydpdG--LD~~~L~~l~~ 468 (629)
++..+++-.|.+|+..||+|.|.|..|..+|+.|.+ .|. +=+.+.|++|-|++... ++..+..
T Consensus 307 gll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~---- 382 (581)
T PLN03129 307 GLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKP---- 382 (581)
T ss_pred HHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHH----
Confidence 888888888999999999999999999999999987 476 34789999999998653 4433321
Q ss_pred HHhhcCcccccccccCCeeEeCCCC-cccccccEEeecCC-CCccChhhHHHH
Q 006848 469 IKSQQRSLRDYSKTYARSKYYDEAK-PWNERCDVAFPCAS-QNEIDQSDAINL 519 (629)
Q Consensus 469 ~k~~~g~l~~~~~~~p~a~~i~~~e-i~~~~cDIliPcA~-~n~It~enA~~l 519 (629)
|+...+ ...+-.+ +-.+++||||=++. .+.+|++-.+..
T Consensus 383 ----------fa~~~~--~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~M 423 (581)
T PLN03129 383 ----------FAHDHE--PGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAM 423 (581)
T ss_pred ----------HHhhcc--cCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHH
Confidence 111000 0001112 22568999999996 589999877653
No 33
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.75 E-value=0.0028 Score=70.39 Aligned_cols=53 Identities=26% Similarity=0.271 Sum_probs=43.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.-.||.|++.+++.+. +..+.|++|+|.|+|++|+.+|+.|...|++ |.|+|.
T Consensus 191 ~~gt~~s~~~ai~rat---~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~-ViV~d~ 243 (425)
T PRK05476 191 RYGTGESLLDGIKRAT---NVLIAGKVVVVAGYGDVGKGCAQRLRGLGAR-VIVTEV 243 (425)
T ss_pred cHHHHhhhHHHHHHhc---cCCCCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcC
Confidence 3457777776665432 5568999999999999999999999999999 667776
No 34
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.67 E-value=0.01 Score=65.58 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=80.5
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCE--EEEEeCCCCceeCCC-CCCHHHHhHHHHH
Q 006848 393 EATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED-GFDYMKISFLRDI 469 (629)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAk--VVaVSDs~G~Iydpd-GLD~~~L~~l~~~ 469 (629)
.-||-=+..++-.+|+-.|++|+..+|++.|.|.-|..++++|...|.+ =|.+.|++|-||+.. -++..+ .
T Consensus 176 qGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~------~ 249 (432)
T COG0281 176 QGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQ------K 249 (432)
T ss_pred cHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccch------H
Confidence 4577777778888888899999999999999999999999999999985 589999999999754 211111 1
Q ss_pred HhhcCcccccccccCCeeEeCCCCcccccccEEeecCCCCccChhhHHH
Q 006848 470 KSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAIN 518 (629)
Q Consensus 470 k~~~g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~~ 518 (629)
|.... ... ...+.. +.-...+|||+=|+..+.+|++-.++
T Consensus 250 k~~~a-~~~------~~~~~~--~~~~~~adv~iG~S~~G~~t~e~V~~ 289 (432)
T COG0281 250 KYAKA-IED------TGERTL--DLALAGADVLIGVSGVGAFTEEMVKE 289 (432)
T ss_pred HHHHH-Hhh------hccccc--cccccCCCEEEEcCCCCCcCHHHHHH
Confidence 11100 000 001110 11345899999999999999988776
No 35
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.61 E-value=0.026 Score=57.52 Aligned_cols=110 Identities=16% Similarity=0.198 Sum_probs=71.9
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCE--EEEEeCCCCceeCCCC--CCHHHHhHHHHHH
Q 006848 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDEDG--FDYMKISFLRDIK 470 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAk--VVaVSDs~G~IydpdG--LD~~~L~~l~~~k 470 (629)
||-=+..++..+++..+.+++++||+|.|.|..|..+|+.|.+.|++ -|.|.|++|-++.... +...+. .+.
T Consensus 4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~----~la 79 (226)
T cd05311 4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKN----EIA 79 (226)
T ss_pred hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHH----HHH
Confidence 33334445666777778899999999999999999999999999987 7899999987766543 322211 111
Q ss_pred hhcCcccccccccCCeeEeCCCCcccccccEEeecCCCCccChhhHHH
Q 006848 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAIN 518 (629)
Q Consensus 471 ~~~g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~~ 518 (629)
+..+. .... .+-.+.+ .++||+|=|+..+.++.+....
T Consensus 80 ~~~~~--------~~~~-~~l~~~l-~~~dvlIgaT~~G~~~~~~l~~ 117 (226)
T cd05311 80 KETNP--------EKTG-GTLKEAL-KGADVFIGVSRPGVVKKEMIKK 117 (226)
T ss_pred HHhcc--------Cccc-CCHHHHH-hcCCEEEeCCCCCCCCHHHHHh
Confidence 11000 0000 0100112 2589999999888888766553
No 36
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.45 E-value=0.022 Score=61.15 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=32.7
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+.+|.|+||.|.|+|++|+.+|+.|...|++|+ +.|.
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~ 181 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL-YYSR 181 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECC
Confidence 457899999999999999999999999999965 4455
No 37
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.39 E-value=0.0088 Score=67.29 Aligned_cols=52 Identities=25% Similarity=0.329 Sum_probs=40.6
Q ss_pred hHHHHHHH-HHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 396 GYGLVFFA-QLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 396 G~GV~~~~-~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.||+..++ ...++..+..+.|++|+|.|+|+||+.+|+.|...|++ |.+.|+
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~-ViV~e~ 285 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGAR-VVVTEI 285 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 44544433 44455567899999999999999999999999999999 556655
No 38
>smart00597 ZnF_TTF zinc finger in transposases and transcription factors.
Probab=96.36 E-value=0.00099 Score=59.10 Aligned_cols=65 Identities=25% Similarity=0.616 Sum_probs=53.6
Q ss_pred HHHHHHHHhhcc-ee-eeeecCCccceeehHhhhh--ccccCCCCCCCcCcccccccc-chhhhhhhHHHHHH
Q 006848 100 KRWREEWADTYK-WA-YVDVKEGTARIFCSVCREY--GRKHRRNPYGNEGSRNMQMSA-LEEHNNSLLHKEAL 167 (629)
Q Consensus 100 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a-l~~h~~~~~h~~a~ 167 (629)
|+-.-.|-+.|+ |. |-.. .+++||-+|..| |....-+.|.++|-+|+.... +..|..+.+|..|-
T Consensus 3 RrF~~~W~~~~~~WL~YS~~---~D~~fC~~C~lF~~~~~~~~~~f~~~Gf~nwk~~~~l~~H~~s~~H~~a~ 72 (90)
T smart00597 3 RRFQRSWFKQFPDWLEYSVE---KDKAFCKACYLFRPGRDGDSDLFVTEGFCSWNVERILKQHEVSKRHRNAF 72 (90)
T ss_pred ccccccccccCcchheeecc---cCcEEEEEEEeeccCCCCCcCcccccCcCcchhhhhHHhhcCCHHHHhHH
Confidence 445567888899 97 4443 556999999998 456788899999999999876 99999999999986
No 39
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.36 E-value=0.0065 Score=67.31 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
||.++ +..+++..+..+.|++|+|.|+|.+|..+|+.+...|++ |.|+|.
T Consensus 184 ~g~s~---~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~-ViV~d~ 233 (413)
T cd00401 184 CRESL---IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGAR-VIVTEV 233 (413)
T ss_pred hchhh---HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence 45544 344555567789999999999999999999999999998 455776
No 40
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.35 E-value=0.024 Score=60.39 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=32.4
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+|.|+||.|.|+|++|+.+|+.|...|++|++. |.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~-d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYY-ST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEE-CC
Confidence 4799999999999999999999999999997655 44
No 41
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.11 E-value=0.039 Score=65.39 Aligned_cols=109 Identities=23% Similarity=0.269 Sum_probs=79.5
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCE--EEEEeCCCCceeCCC--CCCHHHHhHHH
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED--GFDYMKISFLR 467 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAk--VVaVSDs~G~Iydpd--GLD~~~L~~l~ 467 (629)
-.-||-=+..++..+++-.|.+++..||+|.|.|..|..+|++|...|.+ =+.+.|++|.|+... +++..+..
T Consensus 161 ~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~--- 237 (752)
T PRK07232 161 QHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAA--- 237 (752)
T ss_pred cchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHH---
Confidence 34577777778888888889999999999999999999999999999982 478999999999865 45543321
Q ss_pred HHHhhcCcccccccccCCeeEeCCCCcccccccEEeecCCCCccChhhHHH
Q 006848 468 DIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAIN 518 (629)
Q Consensus 468 ~~k~~~g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~~ 518 (629)
|+.. ++. -+-.+.+. .+||||=++..+.+|++-...
T Consensus 238 -----------~a~~-~~~--~~l~~~i~-~~~v~iG~s~~g~~~~~~v~~ 273 (752)
T PRK07232 238 -----------YAVD-TDA--RTLAEAIE-GADVFLGLSAAGVLTPEMVKS 273 (752)
T ss_pred -----------Hhcc-CCC--CCHHHHHc-CCCEEEEcCCCCCCCHHHHHH
Confidence 1110 000 01112223 379999988889999887765
No 42
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.07 E-value=0.037 Score=61.40 Aligned_cols=154 Identities=17% Similarity=0.145 Sum_probs=86.6
Q ss_pred cEEEEecCccHHHHHHHHHHHC----------CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCe
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~----------GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a 486 (629)
.+|+|.|+|+||+.+++.|.+. +.+|++|+|++..-. .+++ .++.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~~-----------------------~~~~ 58 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGVD-----------------------LPGI 58 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCCC-----------------------Cccc
Confidence 6899999999999999988653 468999999842111 1111 0111
Q ss_pred eEeC-CCCcc-cccccEEeecCCCCccChhhHHHHHHcc-----CCCCCC----HHHHHHHHHcCCeeechhhcc-cccc
Q 006848 487 KYYD-EAKPW-NERCDVAFPCASQNEIDQSDAINLVNSG-----SNMPCT----PEAVDVLKKANVLIAPAMAAG-AGGV 554 (629)
Q Consensus 487 ~~i~-~~ei~-~~~cDIliPcA~~n~It~enA~~lI~eG-----AN~P~T----peA~~iL~erGIl~iPD~~aN-AGGV 554 (629)
.+.+ .++++ +.+.||++.|+.+.....+-+...+..| +|-+.. .+..++.+++|+.+. |-+. +||+
T Consensus 59 ~~~~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~--fEasV~ggi 136 (426)
T PRK06349 59 LLTTDPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY--FEAAVAGGI 136 (426)
T ss_pred ceeCCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE--EEEEeeccC
Confidence 1222 23455 4579999999865433333344456666 553322 222345578898766 2222 2221
Q ss_pred ee-e------------hhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006848 555 VA-G------------ELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKES 603 (629)
Q Consensus 555 iv-S------------~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~g~~~~~ 603 (629)
=+ . .++.+-| =|-.-+..++.+ =...|.++++.|++.|+.+..
T Consensus 137 Pii~~l~~~l~~~~I~~I~GIln-----GT~nyIl~~m~~-~g~~f~~al~~Aq~~GyaE~D 192 (426)
T PRK06349 137 PIIKALREGLAANRITRVMGIVN-----GTTNYILTKMTE-EGLSFEDALKEAQRLGYAEAD 192 (426)
T ss_pred chHHHHHhhcccCCeeEEEEEEe-----CcHHHHHhhhhh-cCCCHHHHHHHHHHcCCCCCC
Confidence 11 0 1111111 233455555531 134799999999999986544
No 43
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.96 E-value=0.055 Score=57.25 Aligned_cols=110 Identities=13% Similarity=0.105 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHC----CC------EEEEEeCCCCceeCCCC-CCHHHH
Q 006848 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY----GA------IPVSVSDAKGYLVDEDG-FDYMKI 463 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~----GA------kVVaVSDs~G~IydpdG-LD~~~L 463 (629)
||-=+..++..+++-.|.+|+..||+|.|.|.-|.++|+.|... |. +=+.+.|++|-|++... ++..+.
T Consensus 4 Ta~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~ 83 (279)
T cd05312 4 TAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKK 83 (279)
T ss_pred HHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHH
Confidence 55555667788888889999999999999999999999999876 87 45789999999998654 433322
Q ss_pred hHHHHHHhhcCcccccccccCCeeEeCCCCcc-cccccEEeecCC-CCccChhhHHH
Q 006848 464 SFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW-NERCDVAFPCAS-QNEIDQSDAIN 518 (629)
Q Consensus 464 ~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei~-~~~cDIliPcA~-~n~It~enA~~ 518 (629)
. |..........+-.+.. .+++||||=++. .+.+|++-.+.
T Consensus 84 ~--------------~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~ 126 (279)
T cd05312 84 P--------------FARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRA 126 (279)
T ss_pred H--------------HHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHH
Confidence 1 11000000000111222 468999999996 68999987665
No 44
>PRK12861 malic enzyme; Reviewed
Probab=95.94 E-value=0.1 Score=61.95 Aligned_cols=162 Identities=16% Similarity=0.145 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCcCCCCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCcchHHHHHHHHHHH
Q 006848 328 MRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLIL 407 (629)
Q Consensus 328 ~R~~r~f~~eL~r~IGp~~DVpApDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l 407 (629)
..|. .|+..+.+.+|. |-=+|++.. .--.|-+.|+.-... |+ ..+--.-||-=+..++..++
T Consensus 119 d~~v-~~v~a~~~~fg~---i~lED~~~p--~~f~il~~~~~~~~i--------pv----f~DD~qGTa~v~lA~llnal 180 (764)
T PRK12861 119 DKLV-DIIAGLEPTFGG---INLEDIKAP--ECFTVERKLRERMKI--------PV----FHDDQHGTAITVSAAFINGL 180 (764)
T ss_pred HHHH-HHHHHHHhhcCC---ceeeeccCc--hHHHHHHHHHhcCCC--------Ce----eccccchHHHHHHHHHHHHH
Confidence 4455 788888865544 667888654 444567777752111 11 11223456766777888888
Q ss_pred HHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCE--EEEEeCCCCceeCCCC--CCHHHHhHHHHHHhhcCccccccccc
Q 006848 408 ADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDEDG--FDYMKISFLRDIKSQQRSLRDYSKTY 483 (629)
Q Consensus 408 ~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAk--VVaVSDs~G~IydpdG--LD~~~L~~l~~~k~~~g~l~~~~~~~ 483 (629)
+-.|.+|+..||+|.|.|.-|..+|++|...|.+ =+.+.|++|.|+.... ++..+.. |+..
T Consensus 181 ~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~--------------~a~~- 245 (764)
T PRK12861 181 KVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKER--------------FAQE- 245 (764)
T ss_pred HHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHH--------------HHhh-
Confidence 8889999999999999999999999999999983 3689999999998652 5543321 1100
Q ss_pred CCeeEeCCCCcccccccEEeecCCCCccChhhHHH-----HHHccCC
Q 006848 484 ARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAIN-----LVNSGSN 525 (629)
Q Consensus 484 p~a~~i~~~ei~~~~cDIliPcA~~n~It~enA~~-----lI~eGAN 525 (629)
.+. .+-.+.+. .+||||=++..+.+|++-... +|-.-||
T Consensus 246 ~~~--~~L~eai~-~advliG~S~~g~ft~e~v~~Ma~~PIIFaLsN 289 (764)
T PRK12861 246 TDA--RTLAEVIG-GADVFLGLSAGGVLKAEMLKAMAARPLILALAN 289 (764)
T ss_pred cCC--CCHHHHHh-cCCEEEEcCCCCCCCHHHHHHhccCCEEEECCC
Confidence 000 01111222 369999999999999987765 3434466
No 45
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.88 E-value=0.012 Score=57.23 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=31.8
Q ss_pred cCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006848 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 410 ~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
.+.++.|+||.|.|+|++|+.+|+.|...|++|++++-
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~ 67 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDR 67 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEES
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecc
Confidence 35689999999999999999999999999999766544
No 46
>PRK13529 malate dehydrogenase; Provisional
Probab=95.87 E-value=0.19 Score=57.80 Aligned_cols=172 Identities=16% Similarity=0.201 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCcchHHHHH
Q 006848 322 KSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVF 401 (629)
Q Consensus 322 ~s~~El~R~~r~f~~eL~r~IGp~~DVpApDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~ 401 (629)
.+.+|-..|...||+.+.+.. |..-|==+|++.. .--.|.+.|+.-.. ++ .+--.-||-=+..
T Consensus 218 ~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~--~af~iL~ryr~~i~----~F----------nDDiQGTaaV~LA 280 (563)
T PRK13529 218 IRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQK--NARRILERYRDEIC----TF----------NDDIQGTGAVTLA 280 (563)
T ss_pred CchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCc--hHHHHHHHhccCCC----ee----------ccccchHHHHHHH
Confidence 345677888999999888654 6666667788654 33346677764211 11 1223457766777
Q ss_pred HHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHH----CCC------EEEEEeCCCCceeCCCC-CCHHHHhHHHHHH
Q 006848 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA----YGA------IPVSVSDAKGYLVDEDG-FDYMKISFLRDIK 470 (629)
Q Consensus 402 ~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e----~GA------kVVaVSDs~G~IydpdG-LD~~~L~~l~~~k 470 (629)
++..+++-.|.+|+..||+|.|.|..|..+|+.|.. .|. +=+.+.|++|-|++... ++..+.. +.
T Consensus 281 gll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~----fa 356 (563)
T PRK13529 281 GLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKP----YA 356 (563)
T ss_pred HHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHH----Hh
Confidence 888888888999999999999999999999999986 687 34789999999998764 3222211 00
Q ss_pred hhcCcccccccccCCe-eEeCCCCc-ccccccEEeecCC-CCccChhhHHH
Q 006848 471 SQQRSLRDYSKTYARS-KYYDEAKP-WNERCDVAFPCAS-QNEIDQSDAIN 518 (629)
Q Consensus 471 ~~~g~l~~~~~~~p~a-~~i~~~ei-~~~~cDIliPcA~-~n~It~enA~~ 518 (629)
.....+..+ +.. ...+-.++ -.++.||||=++. .+.+|++-.+.
T Consensus 357 ~~~~~~~~~----~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~ 403 (563)
T PRK13529 357 RKREELADW----DTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKE 403 (563)
T ss_pred hhccccccc----ccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHH
Confidence 000011000 000 00011122 2467899999998 69999987665
No 47
>PRK07574 formate dehydrogenase; Provisional
Probab=95.82 E-value=0.068 Score=58.87 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=31.6
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+|.|+||.|.|+|++|+.+|+.|...|.+|++ .|.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~-~dr 223 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY-TDR 223 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-ECC
Confidence 368999999999999999999999999999654 344
No 48
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.81 E-value=0.027 Score=61.33 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=71.7
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhc
Q 006848 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (629)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~ 473 (629)
-||.+.+-++..+ .+.-+.||+|+|.|||-||+..|..|.-.||+ |.|.+. || +.+|..++
T Consensus 190 GtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~-ViVtEv-----DP----I~AleA~M------ 250 (420)
T COG0499 190 GTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGAR-VIVTEV-----DP----IRALEAAM------ 250 (420)
T ss_pred ccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCe-EEEEec-----Cc----hHHHHHhh------
Confidence 3566665555544 34568999999999999999999999999999 688887 55 22332121
Q ss_pred CcccccccccCCeeEeCCCCcccccccEEeecCC-CCccChhhHHH-----HHHcc--CCCCCCHHHH
Q 006848 474 RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAIN-----LVNSG--SNMPCTPEAV 533 (629)
Q Consensus 474 g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA~-~n~It~enA~~-----lI~eG--AN~P~TpeA~ 533 (629)
..| +..+-++. ....||||-|+. .++|+.+.... ++++. .|.-+..++-
T Consensus 251 ---dGf-------~V~~m~~A-a~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L 307 (420)
T COG0499 251 ---DGF-------RVMTMEEA-AKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGL 307 (420)
T ss_pred ---cCc-------EEEEhHHh-hhcCCEEEEccCCcCccCHHHHHhccCCeEEecccccceeccHHHH
Confidence 122 22221111 235699999986 58999988775 33332 4555555553
No 49
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.76 E-value=0.075 Score=55.92 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-|+|++.+++. .+.++++++|+|.|.|.+|+.++..|.+.|++=|.|.|+
T Consensus 110 D~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 110 DWSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred CHHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 36777777653 335688999999999999999999999999865888887
No 50
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.69 E-value=0.02 Score=62.82 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 401 FFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 401 ~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
..+-.+.+..+.+|.|+||.|.|+||||+.+|+.|...|.+|++. |.
T Consensus 101 ~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~-dp 147 (378)
T PRK15438 101 SSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLC-DP 147 (378)
T ss_pred HHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE-CC
Confidence 334444455678999999999999999999999999999997655 54
No 51
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.67 E-value=0.02 Score=63.47 Aligned_cols=51 Identities=25% Similarity=0.229 Sum_probs=38.9
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.||.+++.+ +++..+..+.|++|+|.|+|++|..+|+.|...|++| .|.|.
T Consensus 176 g~g~s~~~~---i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~V-iV~d~ 226 (406)
T TIGR00936 176 GTGQSTIDG---ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARV-IVTEV 226 (406)
T ss_pred ccchhHHHH---HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEE-EEEeC
Confidence 355544432 3333466799999999999999999999999999994 55665
No 52
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.64 E-value=0.01 Score=53.49 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=27.1
Q ss_pred cCccHHHHHHHHHHHC----CCEEEEEeCCCCceeCCC
Q 006848 423 GSGKIAMHVLEKLIAY----GAIPVSVSDAKGYLVDED 456 (629)
Q Consensus 423 GfGNVG~~aA~~L~e~----GAkVVaVSDs~G~Iydpd 456 (629)
|+|+||+.+++.|.+. +.+|++|+|++ .+.+++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~ 37 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD 37 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh
Confidence 8999999999999986 78999999998 666654
No 53
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.55 E-value=0.045 Score=58.87 Aligned_cols=130 Identities=17% Similarity=0.250 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCC-ceeCCCCCC-HHHHhHHHHHHhhcCccccccc-ccC---
Q 006848 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKG-YLVDEDGFD-YMKISFLRDIKSQQRSLRDYSK-TYA--- 484 (629)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G-~IydpdGLD-~~~L~~l~~~k~~~g~l~~~~~-~~p--- 484 (629)
+.+|.||||-|.|+|++|+.+|+.|...|.+|++.+=... ..-..+|.- .+.|+.+. .+. ++.- ..|
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL---~~s----Div~lh~PlT~ 209 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELL---AEA----DILTLHLPLTP 209 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHH---hhC----CEEEEcCCCCc
Confidence 4578999999999999999999999999999776543111 111111111 11121111 111 1100 011
Q ss_pred Cee-EeCCCCcccc-cccEEeecCCCCccChhhHHHHHHcc----------CCCCCCHHHHHHHHHcCCeeechhh
Q 006848 485 RSK-YYDEAKPWNE-RCDVAFPCASQNEIDQSDAINLVNSG----------SNMPCTPEAVDVLKKANVLIAPAMA 548 (629)
Q Consensus 485 ~a~-~i~~~ei~~~-~cDIliPcA~~n~It~enA~~lI~eG----------AN~P~TpeA~~iL~erGIl~iPD~~ 548 (629)
.-+ .++.+++-.. +--|||=||-+..++++.-...+.+| .+=|..++ ..++.--+|++-|-+.
T Consensus 210 eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~-~pL~~~pnV~~TPHia 284 (324)
T COG0111 210 ETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPAD-SPLWDLPNVILTPHIG 284 (324)
T ss_pred chhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCC-ChhhcCCCeEECCccc
Confidence 000 1111111112 22388888888888886655666655 44454443 3455555666666553
No 54
>PLN03139 formate dehydrogenase; Provisional
Probab=95.54 E-value=0.095 Score=57.77 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=32.7
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+.+|.|+||.|.|+|++|+.+|+.|...|++|++ .|.
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~ 230 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDR 230 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECC
Confidence 4579999999999999999999999999999754 454
No 55
>PRK12862 malic enzyme; Reviewed
Probab=95.50 E-value=0.06 Score=64.00 Aligned_cols=139 Identities=18% Similarity=0.191 Sum_probs=94.7
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccH
Q 006848 348 LPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKI 427 (629)
Q Consensus 348 VpApDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNV 427 (629)
|-=+|++.. .--.|-+.|+.-... |+ ..+--.-||-=+..++..+++-.|.+|+..||+|.|.|.-
T Consensus 139 i~~ED~~~~--~~f~i~~~~~~~~~i--------p~----f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaa 204 (763)
T PRK12862 139 INLEDIKAP--ECFYIERELRERMKI--------PV----FHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAA 204 (763)
T ss_pred eeeecccCc--hHHHHHHHHHhcCCC--------ce----EecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHH
Confidence 455777653 444567777753211 11 1122345777777788888888899999999999999999
Q ss_pred HHHHHHHHHHCCCE--EEEEeCCCCceeCCC--CCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCCCcccccccEEe
Q 006848 428 AMHVLEKLIAYGAI--PVSVSDAKGYLVDED--GFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAF 503 (629)
Q Consensus 428 G~~aA~~L~e~GAk--VVaVSDs~G~Iydpd--GLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei~~~~cDIli 503 (629)
|..+|++|...|.+ =+.+.|++|.|+... +++..+...... .+.+ +-.+.+. .+||||
T Consensus 205 g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~--~~~~---------------~l~e~~~-~~~v~i 266 (763)
T PRK12862 205 ALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQK--TDAR---------------TLAEVIE-GADVFL 266 (763)
T ss_pred HHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhh--cccC---------------CHHHHHc-CCCEEE
Confidence 99999999999983 478999999999865 365444211100 0000 1112233 379999
Q ss_pred ecCCCCccChhhHHH
Q 006848 504 PCASQNEIDQSDAIN 518 (629)
Q Consensus 504 PcA~~n~It~enA~~ 518 (629)
=++..|.+|++-...
T Consensus 267 G~s~~g~~~~~~v~~ 281 (763)
T PRK12862 267 GLSAAGVLKPEMVKK 281 (763)
T ss_pred EcCCCCCCCHHHHHH
Confidence 999999999987765
No 56
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.40 E-value=0.041 Score=57.79 Aligned_cols=111 Identities=13% Similarity=0.144 Sum_probs=64.3
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEe-CCCCcc
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAKPW 495 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i-~~~ei~ 495 (629)
++|.|+|+|++|+.+|+.|.+.|.+| .+.|. + .+++. ...+. ++... +.+++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v-~v~dr-----~-----~~~~~---~~~~~------------g~~~~~~~~e~~ 54 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEV-VGYDR-----N-----PEAVE---ALAEE------------GATGADSLEELV 54 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeE-EEEEC-----C-----HHHHH---HHHHC------------CCeecCCHHHHH
Confidence 37999999999999999999999984 56665 2 22221 11111 11211 122232
Q ss_pred cc--cccEEeecCCCCccChhhHHH---------HHHc-cCCCC-CCHHHHHHHHHcCCeeechhhcccccce
Q 006848 496 NE--RCDVAFPCASQNEIDQSDAIN---------LVNS-GSNMP-CTPEAVDVLKKANVLIAPAMAAGAGGVV 555 (629)
Q Consensus 496 ~~--~cDIliPcA~~n~It~enA~~---------lI~e-GAN~P-~TpeA~~iL~erGIl~iPD~~aNAGGVi 555 (629)
.. .+|+++-|........+-... +++. +...| .+.+..+.++++|+.|+ | ...+||+.
T Consensus 55 ~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~ 125 (301)
T PRK09599 55 AKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVW 125 (301)
T ss_pred hhcCCCCEEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHH
Confidence 21 468877766544222222211 1222 24444 44556688999999998 6 66667653
No 57
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.39 E-value=0.065 Score=56.00 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCE----------EEEEeCCCCceeCCCC-CCHHHH
Q 006848 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI----------PVSVSDAKGYLVDEDG-FDYMKI 463 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAk----------VVaVSDs~G~IydpdG-LD~~~L 463 (629)
||-=+..++..+++-.|.+|+..||+|.|.|..|.++|++|.+.+.+ =+.+.|++|-|++... ++..+.
T Consensus 4 TaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~ 83 (254)
T cd00762 4 TASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEY 83 (254)
T ss_pred hHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHH
Confidence 55555667788888889999999999999999999999999987764 4789999999998763 443221
Q ss_pred hHHHHHHhhcCcccccccccCCeeEeCCCCcc-cccccEEeecCC-CCccChhhHHH
Q 006848 464 SFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW-NERCDVAFPCAS-QNEIDQSDAIN 518 (629)
Q Consensus 464 ~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei~-~~~cDIliPcA~-~n~It~enA~~ 518 (629)
. +.+|.. +.....+-.+.. .++.||||=++. .+.+|++-...
T Consensus 84 ~-----------~~~~~~--~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~ 127 (254)
T cd00762 84 H-----------LARFAN--PERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRA 127 (254)
T ss_pred H-----------HHHHcC--cccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHH
Confidence 1 111211 000001111222 468999999988 89999987765
No 58
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.38 E-value=0.03 Score=61.54 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 403 ~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+-.+.+..+.++.|+||.|.|+||||+.+|+.|...|.+|++. |.
T Consensus 103 lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~-Dp 147 (381)
T PRK00257 103 LLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVC-DP 147 (381)
T ss_pred HHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEE-CC
Confidence 3334455678999999999999999999999999999997654 54
No 59
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.35 E-value=0.039 Score=58.55 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=44.7
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCcc-HHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..|++.. +++.+.+|+|++|+|.|.|+ ||..+|.+|.+.||+ |+++++
T Consensus 138 ~PcTp~ai~~l----l~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gat-Vtv~~s 190 (286)
T PRK14175 138 VPCTPLGIMEI----LKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNAS-VTILHS 190 (286)
T ss_pred CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeC
Confidence 46898887655 45668899999999999999 999999999999999 677776
No 60
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.31 E-value=0.013 Score=54.91 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=43.5
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCCCcc
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei~ 495 (629)
-.+|.|+|.|+||.++++.|.+.|..|++|... ++. ... .... ..+.....+..++.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr-----s~~-----sa~----------~a~~---~~~~~~~~~~~~~~ 66 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR-----SPA-----SAE----------RAAA---FIGAGAILDLEEIL 66 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC-----HH------HHH----------HHHC-----TT-----TTGGG
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC-----Ccc-----ccc----------cccc---cccccccccccccc
Confidence 368999999999999999999999999988765 211 100 0111 12333333334444
Q ss_pred cccccEEeecCCCCccCh
Q 006848 496 NERCDVAFPCASQNEIDQ 513 (629)
Q Consensus 496 ~~~cDIliPcA~~n~It~ 513 (629)
.++|+++-|..-+.|.+
T Consensus 67 -~~aDlv~iavpDdaI~~ 83 (127)
T PF10727_consen 67 -RDADLVFIAVPDDAIAE 83 (127)
T ss_dssp -CC-SEEEE-S-CCHHHH
T ss_pred -ccCCEEEEEechHHHHH
Confidence 38999999987666643
No 61
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.30 E-value=0.068 Score=49.92 Aligned_cols=37 Identities=35% Similarity=0.504 Sum_probs=34.5
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++|++|.|.|.|.+|+.++..|.+.|++-|.|..+
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR 44 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR 44 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 4899999999999999999999999999987888876
No 62
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.29 E-value=0.054 Score=53.04 Aligned_cols=54 Identities=33% Similarity=0.281 Sum_probs=46.1
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-|++-.+..++..++..+.++++++++|.|. |.+|+.+++.|.+.|++|+.+ ++
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~-~R 60 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV-GR 60 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-cC
Confidence 4777777888888888889999999999996 999999999999999986544 44
No 63
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.26 E-value=0.047 Score=57.69 Aligned_cols=51 Identities=25% Similarity=0.338 Sum_probs=43.7
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEecCcc-HHHHHHHHHHHCCCEEEEEeCC
Q 006848 393 EATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaVSDs 448 (629)
..|-+|++..++ +.+.+++|++|+|.|.|+ ||..+|..|.+.||. |+|+++
T Consensus 140 p~T~~gii~~L~----~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gat-Vtv~~~ 191 (283)
T PRK14192 140 SATPAGIMRLLK----AYNIELAGKHAVVVGRSAILGKPMAMMLLNANAT-VTICHS 191 (283)
T ss_pred CCcHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCE-EEEEeC
Confidence 577777766554 568899999999999998 999999999999995 788886
No 64
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.26 E-value=0.086 Score=55.69 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006848 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaV 445 (629)
-|+|-.+-.+.+..+.+|.+|+..+|+|.|. |.||..+|+.|.-++.+..-+
T Consensus 145 ~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll 197 (351)
T COG5322 145 HTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELL 197 (351)
T ss_pred cchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEe
Confidence 5888887777777788999999999999998 999999999999888775443
No 65
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.23 E-value=0.098 Score=58.14 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcc
Q 006848 397 YGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (629)
Q Consensus 397 ~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l 476 (629)
-++.+++-+.++..-.+|++++|.|.|.|.+|.-+|+.|.+.|.+-|.|+.+ +.++...|. .+
T Consensus 159 VSi~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR----------T~erA~~La---~~---- 221 (414)
T COG0373 159 VSISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------TLERAEELA---KK---- 221 (414)
T ss_pred cchHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC----------CHHHHHHHH---HH----
Confidence 3455555556665556799999999999999999999999999888999987 233322121 11
Q ss_pred cccccccCCeeEeCCCCcc--cccccEEeec--CCCCccChhhHHH
Q 006848 477 RDYSKTYARSKYYDEAKPW--NERCDVAFPC--ASQNEIDQSDAIN 518 (629)
Q Consensus 477 ~~~~~~~p~a~~i~~~ei~--~~~cDIliPc--A~~n~It~enA~~ 518 (629)
+ ++.+++-+++. -.++||+|-| |...+|+.++...
T Consensus 222 ------~-~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~ 260 (414)
T COG0373 222 ------L-GAEAVALEELLEALAEADVVISSTSAPHPIITREMVER 260 (414)
T ss_pred ------h-CCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHH
Confidence 1 13333333332 3488998888 5667777766554
No 66
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.20 E-value=0.21 Score=56.36 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcC
Q 006848 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g 474 (629)
-++|...+++ +.+.++++++++|.|.|.+|+.++..|.+.|++| .+.|. + .+++..+. +..+
T Consensus 315 D~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V-~i~~R-----~-----~~~~~~la---~~~~ 376 (477)
T PRK09310 315 DGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAEL-LIFNR-----T-----KAHAEALA---SRCQ 376 (477)
T ss_pred CHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEE-EEEeC-----C-----HHHHHHHH---HHhc
Confidence 4677766664 4567889999999999999999999999999974 56565 2 22222121 1110
Q ss_pred cccccccccCCeeEeCCCCcc-cccccEEeecCCCCccChhhHHHHHHccCCCC-CCHHHHHHHHHcCCeeechhhcccc
Q 006848 475 SLRDYSKTYARSKYYDEAKPW-NERCDVAFPCASQNEIDQSDAINLVNSGSNMP-CTPEAVDVLKKANVLIAPAMAAGAG 552 (629)
Q Consensus 475 ~l~~~~~~~p~a~~i~~~ei~-~~~cDIliPcA~~n~It~enA~~lI~eGAN~P-~TpeA~~iL~erGIl~iPD~~aNAG 552 (629)
. ..++.+++- -.++||+|=|+.-+..-.+....++..-.-.| .|+ -.+..+++|+.++.
T Consensus 377 ~-----------~~~~~~~~~~l~~~DiVInatP~g~~~~~~l~~~v~D~~Y~P~~T~-ll~~A~~~G~~~~~------- 437 (477)
T PRK09310 377 G-----------KAFPLESLPELHRIDIIINCLPPSVTIPKAFPPCVVDINTLPKHSP-YTQYARSQGSSIIY------- 437 (477)
T ss_pred c-----------ceechhHhcccCCCCEEEEcCCCCCcchhHHhhhEEeccCCCCCCH-HHHHHHHCcCEEEC-------
Confidence 0 001111110 13789999887654322222222333333334 455 44556666665554
Q ss_pred cceeehhhhhc--c-cCCCCCCHHHHHHHHHHHHHH
Q 006848 553 GVVAGELELNQ--E-CNMVHWSPEDFESKLQEAMKQ 585 (629)
Q Consensus 553 GVivS~~E~~q--N-~~~~~ws~eeV~~rL~~~m~~ 585 (629)
++||+- . .+-..|+..+..++|+....+
T Consensus 438 -----G~~Ml~~Qa~~~f~lw~g~~~~~~~~~~~~~ 468 (477)
T PRK09310 438 -----GYEMFAEQALLQFRLWFPTLLFKHLEKTFRR 468 (477)
T ss_pred -----cHHHHHHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 445432 1 111237777777777654433
No 67
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=95.16 E-value=0.12 Score=49.64 Aligned_cols=99 Identities=20% Similarity=0.317 Sum_probs=58.7
Q ss_pred cEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccc---cc---cCC--ee
Q 006848 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYS---KT---YAR--SK 487 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~---~~---~p~--a~ 487 (629)
.+|+|.|||.+|+.+++.+.+ .+..++++.|. .+++.+..|.++-...|.+..-. .. ..+ ..
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~---------~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~ 71 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL---------TDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIK 71 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC---------CCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEE
Confidence 479999999999999998875 57899999874 23444433333222223322100 00 000 01
Q ss_pred Ee---CCCC-cc-cccccEEeecCCCCccChhhHHHHHHccCC
Q 006848 488 YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGSN 525 (629)
Q Consensus 488 ~i---~~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eGAN 525 (629)
.+ ++.+ .| ...+||++.| ++...+.+.+...+..||.
T Consensus 72 ~~~~~~p~~~~w~~~gvDiVie~-tG~f~~~~~~~~hl~~Gak 113 (149)
T smart00846 72 VLAERDPANLPWKELGVDIVVEC-TGKFTTREKASAHLKAGAK 113 (149)
T ss_pred EEecCChHHCcccccCCeEEEec-cccccchHHHHHHHHcCCC
Confidence 11 1222 35 5689999999 6666777767666666654
No 68
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.93 E-value=0.072 Score=52.17 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=44.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCcc-HHHHHHHHHHHCCCEEEEEeCC
Q 006848 389 SLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaVSDs 448 (629)
....++|++.++..++ ....+|+|++|+|.|.|. +|..+|+.|.+.|++ |.|+++
T Consensus 21 ~~~~p~~~~a~v~l~~----~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~-V~v~~r 76 (168)
T cd01080 21 PGFIPCTPAGILELLK----RYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNAT-VTVCHS 76 (168)
T ss_pred CCccCChHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCE-EEEEEC
Confidence 3456788877766544 445689999999999998 599899999999998 677776
No 69
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.92 E-value=0.039 Score=57.67 Aligned_cols=110 Identities=16% Similarity=0.161 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHC----CC------EEEEEeCCCCceeCCC-CCCHHHH
Q 006848 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY----GA------IPVSVSDAKGYLVDED-GFDYMKI 463 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~----GA------kVVaVSDs~G~Iydpd-GLD~~~L 463 (629)
||-=+..++-.+++-.|.+|+..||+|.|.|..|..+|++|.+. |. +=+.+.|++|-|++.. .++..+
T Consensus 4 TaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~- 82 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHK- 82 (255)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHH-
T ss_pred hHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhh-
Confidence 44445567778888889999999999999999999999999987 98 5689999999999875 222221
Q ss_pred hHHHHHHhhcCccccccccc-CCeeEeCCCC-cccccccEEeecC-CCCccChhhHHH
Q 006848 464 SFLRDIKSQQRSLRDYSKTY-ARSKYYDEAK-PWNERCDVAFPCA-SQNEIDQSDAIN 518 (629)
Q Consensus 464 ~~l~~~k~~~g~l~~~~~~~-p~a~~i~~~e-i~~~~cDIliPcA-~~n~It~enA~~ 518 (629)
. .|.... +...+.+-.+ +-.++.||||=++ ..+.+|++-.+.
T Consensus 83 -------~------~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~ 127 (255)
T PF03949_consen 83 -------K------PFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRA 127 (255)
T ss_dssp -------H------HHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHH
T ss_pred -------h------hhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHH
Confidence 1 111100 1001111111 2256779999999 679999987765
No 70
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.83 E-value=0.079 Score=51.70 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=38.7
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCc-cHHHHHHHHHHHCCCEEEEEeCC
Q 006848 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfG-NVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-.++|..|++..+ +..+.+++||+|+|.|-+ .||.-++.+|.+.||. |+++++
T Consensus 15 ~~PcTp~aii~lL----~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~at-Vt~~h~ 68 (160)
T PF02882_consen 15 FVPCTPLAIIELL----EYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGAT-VTICHS 68 (160)
T ss_dssp S--HHHHHHHHHH----HHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-E-EEEE-T
T ss_pred CcCCCHHHHHHHH----HhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCe-EEeccC
Confidence 3467888876554 456889999999999986 5999999999999999 688887
No 71
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.77 E-value=0.028 Score=50.21 Aligned_cols=36 Identities=33% Similarity=0.468 Sum_probs=31.0
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++|+|.|.|+||..-++.|.+.||+|.-||..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 689999999999999999999999999998877765
No 72
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.71 E-value=0.13 Score=53.31 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=64.5
Q ss_pred cEEEEecC-ccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEe-CCCC
Q 006848 417 LRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAK 493 (629)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i-~~~e 493 (629)
.+|+|.|+ |++|+..++.+.+ .+.++++++|+ +++.... . ..+ +.... +-++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~-----~~~~~~~--------~-------~~~-----~i~~~~dl~~ 56 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDR-----PGSPLVG--------Q-------GAL-----GVAITDDLEA 56 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec-----CCccccc--------c-------CCC-----CccccCCHHH
Confidence 58999998 9999999998886 47999999998 3332210 0 000 11111 1123
Q ss_pred cccccccEEeecCCCCccChhhHHHHHHccCCCC-----CCHHHHHHH----HHcCCeeechhh
Q 006848 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGSNMP-----CTPEAVDVL----KKANVLIAPAMA 548 (629)
Q Consensus 494 i~~~~cDIliPcA~~n~It~enA~~lI~eGAN~P-----~TpeA~~iL----~erGIl~iPD~~ 548 (629)
++. ++|+++-|+..+.. .+.+...+..|-|.- .+++..+.| ++.+|++.|.+.
T Consensus 57 ll~-~~DvVid~t~p~~~-~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s 118 (257)
T PRK00048 57 VLA-DADVLIDFTTPEAT-LENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFS 118 (257)
T ss_pred hcc-CCCEEEECCCHHHH-HHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECcch
Confidence 444 79999999976655 666666655553222 244433323 335788888873
No 73
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.53 E-value=0.12 Score=57.05 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=72.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCC-CEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCC-CCc
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYG-AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKP 494 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~G-AkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~-~ei 494 (629)
++|+|.|+|+||+.+|++|++.| .. |.|+|. + .+++..+.... .+.++.. .. ++.-.+. .++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~-V~iAdR-----s-----~~~~~~i~~~~--~~~v~~~--~v-D~~d~~al~~l 65 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGE-VTIADR-----S-----KEKCARIAELI--GGKVEAL--QV-DAADVDALVAL 65 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCce-EEEEeC-----C-----HHHHHHHHhhc--cccceeE--Ee-cccChHHHHHH
Confidence 68999999999999999999999 67 789987 3 23332222211 1122111 00 1110000 112
Q ss_pred ccccccEEeecCCCCccChhhHHHHHHcc------CCCCC-CHHHHHHHHHcCCeeechhhcccccceeeh
Q 006848 495 WNERCDVAFPCASQNEIDQSDAINLVNSG------SNMPC-TPEAVDVLKKANVLIAPAMAAGAGGVVAGE 558 (629)
Q Consensus 495 ~~~~cDIliPcA~~n~It~enA~~lI~eG------AN~P~-TpeA~~iL~erGIl~iPD~~aNAGGVivS~ 558 (629)
+. +.|++|=|+.+.. +..-.+..|..| +|.+- ..+-++..+++||+++|+. --+=|++..+
T Consensus 66 i~-~~d~VIn~~p~~~-~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~ 133 (389)
T COG1748 66 IK-DFDLVINAAPPFV-DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVL 133 (389)
T ss_pred Hh-cCCEEEEeCCchh-hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHH
Confidence 22 5599999987643 333344466666 44442 2455678899999999876 2334444433
No 74
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.52 E-value=0.083 Score=56.11 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=45.1
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCcc-HHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+.. +++.+.+++|++|+|.|-++ ||.-+|.+|.+.||. |+++++
T Consensus 144 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~at-Vtv~hs 196 (287)
T PRK14176 144 VPCTPHGVIRA----LEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNAT-VSVCHV 196 (287)
T ss_pred CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCE-EEEEec
Confidence 46898887654 55678899999999999999 999999999999999 688886
No 75
>PLN02494 adenosylhomocysteinase
Probab=94.51 E-value=0.066 Score=60.38 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-||.++ +..+++..+..+.|++|+|.|+|.+|+.+|+.+...|++| .|.|.
T Consensus 235 GtgqS~---~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~V-IV~e~ 285 (477)
T PLN02494 235 GCRHSL---PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARV-IVTEI 285 (477)
T ss_pred cccccH---HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEE-EEEeC
Confidence 345555 4444555667799999999999999999999999999995 45554
No 76
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.48 E-value=0.089 Score=56.22 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=44.2
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCc-cHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfG-NVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.|..|++.. |++.+.+++||+|+|.|.| .||..+|..|.+.|+. |++.++
T Consensus 139 ~PcTp~aii~l----L~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gat-Vtv~~~ 191 (301)
T PRK14194 139 TPCTPSGCLRL----LEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCS-VTVVHS 191 (301)
T ss_pred CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEECC
Confidence 36888887654 4556889999999999996 9999999999999999 677766
No 77
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.41 E-value=0.27 Score=53.21 Aligned_cols=99 Identities=18% Similarity=0.305 Sum_probs=61.8
Q ss_pred cEEEEecCccHHHHHHHHHHHCC--CEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccc------ccccCCe--
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDY------SKTYARS-- 486 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~G--AkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~------~~~~p~a-- 486 (629)
.||+|=|||-.|+.+++.+.+.+ ..||+|.|. .|.+-+..|.++....|++..- ...+.+.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~---------t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I 72 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL---------TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGI 72 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC---------CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceE
Confidence 58999999999999999999976 899999995 2333443344333222322211 0111111
Q ss_pred eEe---CCCC-cc-cccccEEeecCCCCccChhhHHHHHHc-cCC
Q 006848 487 KYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNS-GSN 525 (629)
Q Consensus 487 ~~i---~~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~e-GAN 525 (629)
+.. +++. .| +..+||.+.|+.... +.+++.+++.. ||.
T Consensus 73 ~v~~~~~p~~l~w~d~gvdiVve~Tg~f~-~~e~~~~hl~agGaK 116 (335)
T COG0057 73 KVLAERDPANLPWADLGVDIVVECTGKFT-GREKAEKHLKAGGAK 116 (335)
T ss_pred EEEecCChHHCCccccCccEEEECCCCcc-chhhHHHHHHhcCCC
Confidence 111 1122 35 567999999997766 88888876655 444
No 78
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.39 E-value=0.094 Score=55.64 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=44.9
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCcc-HHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+.. +++.+.+++|++|+|.|-++ ||.-+|.+|.+.||. |+++++
T Consensus 139 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~at-Vtv~hs 191 (285)
T PRK10792 139 RPCTPRGIMTL----LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCT-VTVCHR 191 (285)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCe-EEEEEC
Confidence 36898887654 55668899999999999999 999999999999998 688877
No 79
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=94.25 E-value=0.082 Score=55.24 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=63.0
Q ss_pred CCCcEEEEecCccHHHHHHHHHHH--CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEe-C
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIA--YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-D 490 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e--~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i-~ 490 (629)
.+.+||.|.|+|++|+..++.|.+ .+.++++|.|. +++ +. .+..+. ++..... +
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr-----~~~-----~a---~~~a~~----------~g~~~~~~~ 60 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR-----DPQ-----RH---ADFIWG----------LRRPPPVVP 60 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC-----CHH-----HH---HHHHHh----------cCCCcccCC
Confidence 456899999999999999999986 48899999987 332 21 111111 1111111 2
Q ss_pred CCCcccccccEEeecCCCCccChhhHHHHHHccCCCC--------CCHHHHHHHHHcCCee
Q 006848 491 EAKPWNERCDVAFPCASQNEIDQSDAINLVNSGSNMP--------CTPEAVDVLKKANVLI 543 (629)
Q Consensus 491 ~~ei~~~~cDIliPcA~~n~It~enA~~lI~eGAN~P--------~TpeA~~iL~erGIl~ 543 (629)
.++++ .++|+++-|+..... .+-+..++..|-+-- ...+..+..+++|+.+
T Consensus 61 ~eell-~~~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 61 LDQLA-THADIVVEAAPASVL-RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred HHHHh-cCCCEEEECCCcHHH-HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 23444 368999999976543 445555555552221 1133335667788754
No 80
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.10 E-value=0.56 Score=48.62 Aligned_cols=49 Identities=22% Similarity=0.218 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-++|.+.+++. .+...+++++.|.|.|.+|+.++..|.+.|++ |.|.|+
T Consensus 100 D~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~-v~v~~R 148 (270)
T TIGR00507 100 DGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCN-VIIANR 148 (270)
T ss_pred CHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence 46677666543 34567789999999999999999999999987 567776
No 81
>PRK06487 glycerate dehydrogenase; Provisional
Probab=93.98 E-value=0.068 Score=57.06 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+|.|+||.|.|+|++|+.+|+.|...|++|++..
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~ 178 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQ 178 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEEC
Confidence 47899999999999999999999999999987764
No 82
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=93.98 E-value=0.23 Score=53.87 Aligned_cols=97 Identities=20% Similarity=0.313 Sum_probs=60.7
Q ss_pred cEEEEecCccHHHHHHHHHHHC----CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccccc------ccCC-
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR- 485 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~----GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~------~~p~- 485 (629)
.+|+|-|||-||+.+.+.|.+. ...||+|-|. .|.+.+..|.++-...|++..-.. .+.+
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~---------~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~ 72 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL---------ADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDD 72 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCE
Confidence 4799999999999999999884 4788888764 245555445444333233221000 0111
Q ss_pred -eeEe---CCCC-cc-cccccEEeecCCCCccChhhHHHHHHcc
Q 006848 486 -SKYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 486 -a~~i---~~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
.... ++++ .| +..+||++.|+.. ..+.+.|...+..|
T Consensus 73 ~i~v~~~~~p~~~~w~~~gvDiVle~tG~-~~s~~~a~~~l~aG 115 (336)
T PRK13535 73 AIRLLHERDIASLPWRELGVDVVLDCTGV-YGSREDGEAHIAAG 115 (336)
T ss_pred EEEEEEcCCcccCcccccCCCEEEEccch-hhhHHHHHHHHHcC
Confidence 1122 2333 46 4799999999954 47777787776666
No 83
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.97 E-value=0.08 Score=55.02 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=62.2
Q ss_pred cEEEEecCccHHHHHHHHHHHC--CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEe-CCCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAK 493 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~--GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i-~~~e 493 (629)
++|.|.|+|++|...++.|.+. +..+++|.|+ ++ +... +..+. + +.... +.++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~-----~~-----~~a~---~~a~~------~-----~~~~~~~~~e 57 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR-----NL-----EKAE---NLASK------T-----GAKACLSIDE 57 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC-----CH-----HHHH---HHHHh------c-----CCeeECCHHH
Confidence 4899999999999999998875 5788999998 32 2221 11111 1 11112 2244
Q ss_pred cccccccEEeecCCCCccChhhHHHHHHccCCCC-------CCH----HHHHHHHHcCC-eeech
Q 006848 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGSNMP-------CTP----EAVDVLKKANV-LIAPA 546 (629)
Q Consensus 494 i~~~~cDIliPcA~~n~It~enA~~lI~eGAN~P-------~Tp----eA~~iL~erGI-l~iPD 546 (629)
++ .++|+++-|+..... .+-+..++..|.+.- .++ +..+..+++|+ +++|.
T Consensus 58 ll-~~~DvVvi~a~~~~~-~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~s 120 (265)
T PRK13304 58 LV-EDVDLVVECASVNAV-EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPS 120 (265)
T ss_pred Hh-cCCCEEEEcCChHHH-HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeC
Confidence 55 589999999865443 445555555554432 122 33345677785 44553
No 84
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.96 E-value=0.087 Score=51.74 Aligned_cols=85 Identities=12% Similarity=0.192 Sum_probs=46.7
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHH---HHhhcCcccc--cccccCCeeEeCCC
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRD---IKSQQRSLRD--YSKTYARSKYYDEA 492 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~---~k~~~g~l~~--~~~~~p~a~~i~~~ 492 (629)
+|+|.|.|..|...|..++..|.. |.+.|. |++.++... ..+.. ....++.+.. .........+.++-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~-----~~~~l~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDR-----SPEALERAR-KRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSE-EEEE-S-----SHHHHHHHH-HHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCc-EEEEEC-----ChHHHHhhh-hHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 689999999999999999999999 677777 555443211 11111 1112232220 00011223333332
Q ss_pred CcccccccEEeecCCCCc
Q 006848 493 KPWNERCDVAFPCASQNE 510 (629)
Q Consensus 493 ei~~~~cDIliPcA~~n~ 510 (629)
+-+. +||+.|.|..++.
T Consensus 74 ~~~~-~adlViEai~E~l 90 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDL 90 (180)
T ss_dssp GGGC-TESEEEE-S-SSH
T ss_pred HHHh-hhheehhhccccH
Confidence 3333 9999999998764
No 85
>PLN02928 oxidoreductase family protein
Probab=93.95 E-value=0.074 Score=57.59 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=32.7
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+.+|.|+||.|.|+|++|+.+|+.|...|++|++. |.
T Consensus 154 ~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~-dr 190 (347)
T PLN02928 154 GDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT-RR 190 (347)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CC
Confidence 35799999999999999999999999999997654 54
No 86
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.94 E-value=0.17 Score=51.18 Aligned_cols=112 Identities=16% Similarity=0.112 Sum_probs=72.1
Q ss_pred CCcchHHHHHHHHHHH-----HHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhH
Q 006848 392 TEATGYGLVFFAQLIL-----ADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISF 465 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l-----~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~ 465 (629)
.++|..||+..++..- ...+.+++||+|+|.|- ..||.-+|.+|.+.||. |+++|++|..+-..+-..
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~At-Vti~~~~~~~~~~~~~~~----- 106 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGAR-VYSVDINGIQVFTRGESI----- 106 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEEecCccccccccccc-----
Confidence 4799999877766430 01145899999999995 66899999999999999 679999876664433210
Q ss_pred HHHHHhhcCcccccccccCCeeEeCC-C-Ccc--cccccEEeecCCC-Cc-cChhhHHH---HHHccCCC
Q 006848 466 LRDIKSQQRSLRDYSKTYARSKYYDE-A-KPW--NERCDVAFPCASQ-NE-IDQSDAIN---LVNSGSNM 526 (629)
Q Consensus 466 l~~~k~~~g~l~~~~~~~p~a~~i~~-~-ei~--~~~cDIliPcA~~-n~-It~enA~~---lI~eGAN~ 526 (629)
.+ .+ +...+ + .+. -..+||+|-|... +. |+.+..+. +|.-|-|.
T Consensus 107 -~h---s~-------------t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 107 -RH---EK-------------HHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIK 159 (197)
T ss_pred -cc---cc-------------ccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCCcEEEEcCCCc
Confidence 00 00 00000 0 122 3488999998875 55 68776653 44455553
No 87
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.93 E-value=0.076 Score=51.23 Aligned_cols=35 Identities=34% Similarity=0.340 Sum_probs=31.8
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+|+|++|+|.|.|+||...++.|.+.|+.|+-|+
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 47899999999999999999999999999976663
No 88
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.89 E-value=0.14 Score=54.34 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=43.6
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccH-HHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKI-AMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNV-G~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..|++. +|++.+.+++|++|+|.|.|++ |.-+|.+|.+.||. |+++++
T Consensus 138 ~PcTp~aii~----lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~at-Vt~~hs 190 (285)
T PRK14189 138 RPCTPYGVMK----MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGAT-VTICHS 190 (285)
T ss_pred cCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEecC
Confidence 4688888754 4566789999999999999887 99999999999999 566665
No 89
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=93.88 E-value=0.42 Score=51.58 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=32.8
Q ss_pred cCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 410 ~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.++.|||+.|.|+|.+|+.+|+.+.-.|++|+ ..|.
T Consensus 140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y~~~ 177 (324)
T COG1052 140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-YYDR 177 (324)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-EECC
Confidence 4568999999999999999999999999999964 4443
No 90
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=93.87 E-value=0.28 Score=52.99 Aligned_cols=96 Identities=18% Similarity=0.320 Sum_probs=57.6
Q ss_pred EEEEecCccHHHHHHHHHHHCC----CEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccccc------ccCC--
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYG----AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR-- 485 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~G----AkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~------~~p~-- 485 (629)
||+|.|||-+|+.+.+.|.+.+ ..|++|.|.. +.+.+..|.++-...|++..-.. .+.+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~---------~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 71 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA---------DQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDC 71 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC---------CHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeE
Confidence 5899999999999999999864 7999998851 22333323332211222210000 0001
Q ss_pred eeEe---CCCC-cc-cccccEEeecCCCCccChhhHHHHHHcc
Q 006848 486 SKYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 486 a~~i---~~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
.+.. ++++ .| +..+||++.|+.. ..+.+.|...+..|
T Consensus 72 i~v~~~~~p~~~~w~~~gvDiVie~tG~-~~s~e~a~~~l~aG 113 (325)
T TIGR01532 72 IRVLHSPTPEALPWRALGVDLVLDCTGV-YGNREQGERHIRAG 113 (325)
T ss_pred EEEEEcCChhhccccccCCCEEEEccch-hccHHHHHHHHHcC
Confidence 1222 2323 46 4799999999965 46777787777666
No 91
>PRK06932 glycerate dehydrogenase; Provisional
Probab=93.83 E-value=0.073 Score=56.83 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.6
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaV 445 (629)
.+|.|+||.|.|+|++|+.+|+.|...|++|+++
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~ 176 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA 176 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE
Confidence 4689999999999999999999999999998775
No 92
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.81 E-value=0.21 Score=53.34 Aligned_cols=52 Identities=27% Similarity=0.432 Sum_probs=44.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+.. |++.+.+++||+|+|.| .|.||..+|..|.+.|+. |+|.++
T Consensus 138 ~PcTp~ai~~l----l~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~t-Vtv~~~ 190 (296)
T PRK14188 138 VPCTPLGCMML----LRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANAT-VTIAHS 190 (296)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCE-EEEECC
Confidence 47898887654 45567899999999999 999999999999999999 566653
No 93
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.80 E-value=0.11 Score=49.83 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=25.3
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|.+.|+|+.|+.+|+.|.+.|..| .+-|.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v-~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEV-TVYDR 32 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEE-EEEES
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeE-Eeecc
Confidence 58999999999999999999999995 55554
No 94
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.74 E-value=0.16 Score=54.02 Aligned_cols=52 Identities=27% Similarity=0.356 Sum_probs=44.5
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCc-cHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfG-NVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+.. |++.+.+++|++|+|.|-| .||.-+|.+|.+.||. |+++++
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAt-Vtv~hs 189 (285)
T PRK14191 137 VPATPMGVMRL----LKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGAS-VSVCHI 189 (285)
T ss_pred CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCE-EEEEeC
Confidence 46898887654 5567889999999999998 8999999999999999 678776
No 95
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.72 E-value=0.058 Score=49.81 Aligned_cols=111 Identities=21% Similarity=0.302 Sum_probs=61.2
Q ss_pred cEEEEecC-ccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCC-CC
Q 006848 417 LRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (629)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~-~e 493 (629)
.||+|.|+ |++|+.+++.+.+ .|..++++.|++.. +-.|-|+.++. + +.. .+....++ ++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--~~~g~d~g~~~---------~-~~~-----~~~~v~~~l~~ 63 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--AKVGKDVGELA---------G-IGP-----LGVPVTDDLEE 63 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--TTTTSBCHHHC---------T-SST------SSBEBS-HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--ccccchhhhhh---------C-cCC-----cccccchhHHH
Confidence 48999999 9999999999998 89999999999542 11355554331 0 000 11122222 23
Q ss_pred cccccccEEeecCCCCccChhhHHHHHHccCCCC--C---CHHHHHHHHH----cCCeeech
Q 006848 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGSNMP--C---TPEAVDVLKK----ANVLIAPA 546 (629)
Q Consensus 494 i~~~~cDIliPcA~~n~It~enA~~lI~eGAN~P--~---TpeA~~iL~e----rGIl~iPD 546 (629)
++.. |||+|-++....+ .+++...+..|-+.- + +++..+.|++ -++++.|.
T Consensus 64 ~~~~-~DVvIDfT~p~~~-~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~a~N 123 (124)
T PF01113_consen 64 LLEE-ADVVIDFTNPDAV-YDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVLIAPN 123 (124)
T ss_dssp HTTH--SEEEEES-HHHH-HHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEEE-SS
T ss_pred hccc-CCEEEEcCChHHh-HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEEEeCC
Confidence 4444 9999999833222 123333444443322 1 3555555555 45566554
No 96
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=93.60 E-value=0.15 Score=49.20 Aligned_cols=99 Identities=17% Similarity=0.290 Sum_probs=60.2
Q ss_pred cEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccc------cCC--ee
Q 006848 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKT------YAR--SK 487 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~------~p~--a~ 487 (629)
.||+|-|||-.|+.+++.+.. ....||+|.|. +.|.+.+..|.++-...|++...... ..+ .+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~--------~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~ 72 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDP--------APDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIK 72 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEES--------SSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEE
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecc--------cccchhhhhhhhccccccceecccccccceeEeeccccc
Confidence 389999999999999999884 56899999887 34666665554432222333211110 001 11
Q ss_pred EeC---CCC-cc-cccccEEeecCCCCccChhhHHHHHHccC
Q 006848 488 YYD---EAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGS 524 (629)
Q Consensus 488 ~i~---~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eGA 524 (629)
.+. +++ .| +..+||++.|+. .-.+.+++...+..||
T Consensus 73 ~~~~~dp~~i~W~~~gvDiVvEcTG-~f~~~~~~~~hl~~Ga 113 (151)
T PF00044_consen 73 VTEERDPEEIPWGELGVDIVVECTG-KFRTRENAEAHLDAGA 113 (151)
T ss_dssp EEHTSSGGGSTHHHHTESEEEETSS-STHSHHHHTHHHHTTE
T ss_pred chhhhhhcccccccccccEEEeccc-cceecccccccccccc
Confidence 111 122 36 579999999984 3445666666555553
No 97
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.51 E-value=0.096 Score=52.51 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=31.5
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+|+|++|+|.|.|.||...++.|.+.|++|+-|+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 36899999999999999999999999999976554
No 98
>PRK06436 glycerate dehydrogenase; Provisional
Probab=93.50 E-value=0.11 Score=55.51 Aligned_cols=34 Identities=21% Similarity=0.094 Sum_probs=31.1
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVS 446 (629)
+|.|+||.|.|+|++|+.+|+.|...|.+|+++.
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~ 152 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYT 152 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEC
Confidence 6899999999999999999999999999976654
No 99
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.45 E-value=0.29 Score=46.72 Aligned_cols=51 Identities=24% Similarity=0.256 Sum_probs=41.5
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 393 EATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
..|..|+ .+++++.+.+++|++|.|.| ...||.-+|.+|.+.|+. |.++++
T Consensus 9 p~t~~a~----~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gat-V~~~~~ 60 (140)
T cd05212 9 SPVAKAV----KELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGAT-VYSCDW 60 (140)
T ss_pred ccHHHHH----HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeCC
Confidence 4565555 45566678999999999999 577999999999999999 567776
No 100
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.28 E-value=0.27 Score=52.28 Aligned_cols=52 Identities=25% Similarity=0.392 Sum_probs=44.6
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..|++. +|++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++++
T Consensus 139 ~PcTp~avi~----ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~at-Vt~chs 191 (284)
T PRK14177 139 LPCTPYGMVL----LLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNAT-VTLCHS 191 (284)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 4689988876 455678899999999999 577999999999999999 788887
No 101
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.16 E-value=0.26 Score=52.35 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=44.1
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+.. |++.+.+++||+|+|.|- |.||.-+|..|.+.|+. |+++.+
T Consensus 138 ~PcTp~avi~l----L~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gat-Vtv~~s 190 (284)
T PRK14179 138 IPCTPAGIMEM----FREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNAT-VTLTHS 190 (284)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCE-EEEECC
Confidence 47898887554 456788999999999998 99999999999999999 566654
No 102
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.15 E-value=0.12 Score=52.06 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=31.2
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
+|+|++|+|.|.|.||..-++.|.+.||+|+-||.
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 68999999999999999999999999999655543
No 103
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.07 E-value=0.14 Score=54.70 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=31.6
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVS 446 (629)
.++.|+||.|.|+|++|+.+|+.|...|.+|+++.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~ 166 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWS 166 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 36789999999999999999999999999977664
No 104
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=93.00 E-value=0.48 Score=51.37 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=61.7
Q ss_pred cEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccccc------ccCC--ee
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR--SK 487 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~------~~p~--a~ 487 (629)
.||+|=|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|.++-...|++..-.. .+.+ ..
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~---------~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~ 73 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL---------LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIR 73 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC---------CCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEE
Confidence 4899999999999999987754 6899999875 245555445444333343321110 0111 11
Q ss_pred Ee---CCCC-cc-cccccEEeecCCCCccChhhHHHHHHcc
Q 006848 488 YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 488 ~i---~~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
.. ++++ .| +..+||++.|+.. ..+.+.|...+..|
T Consensus 74 v~~~~dp~~~~w~~~gvDiVle~tG~-f~s~~~a~~hl~aG 113 (331)
T PRK15425 74 VTAERDPANLKWDEVGVDVVAEATGL-FLTDETARKHITAG 113 (331)
T ss_pred EEEcCChhhCcccccCCCEEEEecch-hhcHHHHHHHHHCC
Confidence 22 2333 46 4699999999854 47777888776666
No 105
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.98 E-value=0.13 Score=56.85 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=31.9
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+|.|+||.|.|+|++|+.+|+.|...|.+|++..
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d 181 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYD 181 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 47899999999999999999999999999976653
No 106
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=92.89 E-value=0.24 Score=53.56 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=56.0
Q ss_pred CcEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCCCc
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~-GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei 494 (629)
..||+|.|+||+|+..++.|.+. +..+|+|.|.+ + .+.+ +. .+..| . ..+.+.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-----~----~~~~------~~---~~~v~----~----~~d~~e 56 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-----G----AETL------DT---ETPVY----A----VADDEK 56 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-----c----HHHH------hh---cCCcc----c----cCCHHH
Confidence 36999999999999999988765 89999999983 2 1111 10 11111 1 112222
Q ss_pred ccccccEEeecCCCCccChhhHHHHHHccCCC
Q 006848 495 WNERCDVAFPCASQNEIDQSDAINLVNSGSNM 526 (629)
Q Consensus 495 ~~~~cDIliPcA~~n~It~enA~~lI~eGAN~ 526 (629)
+..++|+++-|+ .+..+.+.+..++..|-|-
T Consensus 57 ~l~~iDVViIct-Ps~th~~~~~~~L~aG~NV 87 (324)
T TIGR01921 57 HLDDVDVLILCM-GSATDIPEQAPYFAQFANT 87 (324)
T ss_pred hccCCCEEEEcC-CCccCHHHHHHHHHcCCCE
Confidence 336799999995 5566777888888888554
No 107
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.73 E-value=0.49 Score=39.78 Aligned_cols=49 Identities=31% Similarity=0.456 Sum_probs=38.6
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHH
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~ 469 (629)
+|+|.|.|.+|..+|..|.+.|.+ |++-+....+. ..+|.+....+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~-vtli~~~~~~~--~~~~~~~~~~~~~~ 49 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE-VTLIERSDRLL--PGFDPDAAKILEEY 49 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE-EEEEESSSSSS--TTSSHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE-EEEEeccchhh--hhcCHHHHHHHHHH
Confidence 689999999999999999999999 57777767666 66776654444433
No 108
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=92.73 E-value=0.5 Score=52.43 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=60.1
Q ss_pred cEEEEecCccHHHHHHHHHHHC---CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccccc-------ccCC-
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK-------TYAR- 485 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~---GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~-------~~p~- 485 (629)
.+|+|-|||-||+.+.+.|.+. ...||+|-|. .|++.+..|..+-...|++..-.. .+.+
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~---------~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk 131 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT---------GGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGK 131 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC---------CCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCE
Confidence 5899999999999999999876 4688999775 244455444443333233211100 0111
Q ss_pred -eeEeC---CCC-cc-cccccEEeecCCCCccChhhHHHHHHcc
Q 006848 486 -SKYYD---EAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 486 -a~~i~---~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
..... +++ .| +..+||++.|+.. ..+.+.|...+..|
T Consensus 132 ~I~v~~~~dp~~~~w~~~gvDiVie~TG~-f~s~~~a~~hl~aG 174 (395)
T PLN03096 132 VIKVVSDRNPLNLPWGELGIDLVIEGTGV-FVDREGAGKHIQAG 174 (395)
T ss_pred EEEEEEcCCcccccccccCCCEEEECcch-hhhHHHHHHHHHCC
Confidence 11222 222 46 4799999999854 46777777766666
No 109
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.67 E-value=0.3 Score=52.19 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=44.2
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+ ++|++.+.+++||+|+|.|- ..||.-++.+|.+.||. |+++++
T Consensus 140 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aT-Vt~chs 192 (294)
T PRK14187 140 IPCTPKGCL----YLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCT-VTTVHS 192 (294)
T ss_pred cCcCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCE-EEEeCC
Confidence 368988875 45566789999999999995 67899999999999999 688887
No 110
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=92.61 E-value=0.17 Score=54.41 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=31.4
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+|.|++|.|.|+|++|+.+|+.|...|.+|++..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d 176 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYD 176 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 46899999999999999999999999999976553
No 111
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=92.59 E-value=0.3 Score=53.09 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCC
Q 006848 399 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKG 450 (629)
Q Consensus 399 V~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G 450 (629)
+.+++..+++.. .++++++|.|.|.|.+|.-+|+.|.+.|++-|.|+.++-
T Consensus 158 v~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 158 IESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred HHHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 444444444555 579999999999999999999999999987788988743
No 112
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=92.55 E-value=0.59 Score=52.25 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=63.2
Q ss_pred cEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccccc-------ccCC--e
Q 006848 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK-------TYAR--S 486 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~-------~~p~--a 486 (629)
.||.|-|||-.|+.+++.+.+ .+.+||+|-|.. .|.+.+..|.++-...|++..-.+ .+.+ .
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~--------~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I 157 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF--------IDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQI 157 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC--------CCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEE
Confidence 499999999999999999875 689999997742 244455445444333344332111 0111 1
Q ss_pred eEe---CCCC-ccc-ccccEEeecCCCCccChhhHHHHHHccC
Q 006848 487 KYY---DEAK-PWN-ERCDVAFPCASQNEIDQSDAINLVNSGS 524 (629)
Q Consensus 487 ~~i---~~~e-i~~-~~cDIliPcA~~n~It~enA~~lI~eGA 524 (629)
+.. ++++ .|. .++||++.|+.. ..+.+.|...+..||
T Consensus 158 ~V~~~~dp~~~~w~~~gVDiVlesTG~-f~s~e~a~~hl~aGA 199 (421)
T PLN02272 158 KVTSKRDPAEIPWGDFGAEYVVESSGV-FTTVEKASAHLKGGA 199 (421)
T ss_pred EEEecCCcccCcccccCCCEEEEcCch-hccHHHHHHHhhCCC
Confidence 122 2222 464 589999999854 477778887777775
No 113
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=92.45 E-value=0.16 Score=54.48 Aligned_cols=37 Identities=11% Similarity=0.212 Sum_probs=31.8
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHH-HCCCEEEEEeCC
Q 006848 411 NKELKGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDA 448 (629)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aA~~L~-e~GAkVVaVSDs 448 (629)
+.+|.|+||.|.|+|++|+.+|+.|. -.|.+|++ .|.
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~-~~~ 177 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILY-NAR 177 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEE-ECC
Confidence 44799999999999999999999998 89999764 443
No 114
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=92.31 E-value=0.57 Score=50.90 Aligned_cols=99 Identities=15% Similarity=0.265 Sum_probs=62.3
Q ss_pred cEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccc--cc--c----ccCC--
Q 006848 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRD--YS--K----TYAR-- 485 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~--~~--~----~~p~-- 485 (629)
.||+|.|||.+|+..++.+.+ .+..+|+|.|... |.+.+..|.++-...|++.. .. . .+.+
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~--------~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~ 77 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI--------TTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 77 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC--------CHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEE
Confidence 699999999999999998876 4799999998622 44455444433333344431 10 0 0111
Q ss_pred eeEeC---CCC-cc-cccccEEeecCCCCccChhhHHHHHHccC
Q 006848 486 SKYYD---EAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGS 524 (629)
Q Consensus 486 a~~i~---~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eGA 524 (629)
..... +++ .| +..+||++.|+. ...+.+.|...+..||
T Consensus 78 i~v~~~~~p~~~~w~~~gvDiVie~tG-~~~s~~~a~~hl~aGa 120 (338)
T PLN02358 78 VTVFGIRNPEDIPWGEAGADFVVESTG-VFTDKDKAAAHLKGGA 120 (338)
T ss_pred EEEEEcCCcccCcccccCCCEEEEccc-chhhHHHHHHHHHCCC
Confidence 11111 223 36 368999999985 4577778887777774
No 115
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=92.21 E-value=0.37 Score=51.54 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=44.3
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+..+ ++.+.+++||+|+|.|= ..||.-+|.+|.+.||. |+++.+
T Consensus 147 ~PcTp~avi~lL----~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~AT-Vtvchs 199 (299)
T PLN02516 147 LPCTPKGCLELL----SRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADAT-VTVVHS 199 (299)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCC
Confidence 478998876554 46688999999999995 66899999999999999 788887
No 116
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.20 E-value=0.29 Score=55.83 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006848 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaV 445 (629)
+.+|.|+||.|.|+|++|+.+|+.|...|++|++.
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~ 169 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAY 169 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 44789999999999999999999999999997655
No 117
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=92.09 E-value=1.5 Score=46.10 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHcC--CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 396 GYGLVFFAQLILADMN--KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 396 G~GV~~~~~~~l~~~g--~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|.+.+++. .+ .+++|++|+|.|.|..|+.++..|.+.|++-|.|.++
T Consensus 107 ~~G~~~~l~~----~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 107 WDGIAGALAN----IGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred HHHHHHHHHh----hCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence 6677766653 34 2588999999999999999999999999876888877
No 118
>PLN02306 hydroxypyruvate reductase
Probab=92.08 E-value=0.19 Score=55.39 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=30.8
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHH-HCCCEEEEE
Q 006848 411 NKELKGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSV 445 (629)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aA~~L~-e~GAkVVaV 445 (629)
+.+|.|+||.|.|+|++|+.+|+.|. ..|++|++.
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~ 195 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 45789999999999999999999985 899997654
No 119
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=91.95 E-value=0.64 Score=50.34 Aligned_cols=96 Identities=18% Similarity=0.299 Sum_probs=59.4
Q ss_pred EEEEecCccHHHHHHHHHHHC---CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccc-------cccCCe-
Q 006848 418 RCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYS-------KTYARS- 486 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~---GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~-------~~~p~a- 486 (629)
||+|=|||-+|+.+.+.+.+. ..+||+|-|. .|++.+..|.++-...|++..-. ..+.+-
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~ 71 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL---------TDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKF 71 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC---------CCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeE
Confidence 589999999999999998765 5799999874 35555544444332233321100 011111
Q ss_pred --eEe---CCCC-cc-cccccEEeecCCCCccChhhHHHHHHcc
Q 006848 487 --KYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 487 --~~i---~~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
... ++++ .| +..+|+++.|+.. ..+.+.|...+..|
T Consensus 72 ~i~v~~~~dp~~~~w~~~gvDiVle~tG~-~~s~~~a~~hl~~G 114 (327)
T TIGR01534 72 VIVVASERDPSDLPWKALGVDIVIECTGK-FRDKEKLEGHLEAG 114 (327)
T ss_pred EEEEEecCCcccCchhhcCCCEEEEccch-hhcHHHHHHHhhCC
Confidence 122 2222 46 4689999999854 47777777766666
No 120
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.89 E-value=0.22 Score=49.70 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=32.8
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~ 449 (629)
.|+.++|+|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4788999999999999999999999998557888864
No 121
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.86 E-value=0.37 Score=51.24 Aligned_cols=52 Identities=25% Similarity=0.322 Sum_probs=43.5
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+. +|++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++++
T Consensus 138 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~at-Vt~chs 190 (284)
T PRK14190 138 LPCTPHGILE----LLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENAT-VTYCHS 190 (284)
T ss_pred CCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEeC
Confidence 3688887754 556678899999999999 577999999999999999 677776
No 122
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.86 E-value=0.44 Score=50.62 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=43.9
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+..+ ++.+.+++||+|+|.|- ..||.-+|.+|.+.||. |+++.+
T Consensus 137 ~PcTp~avi~lL----~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~at-Vt~chs 189 (282)
T PRK14166 137 LPCTPLGVMKLL----KAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGAT-VSVCHI 189 (282)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 468988876554 55688999999999994 67899999999999999 688887
No 123
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.81 E-value=0.56 Score=49.98 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=44.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+.. |++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++.+
T Consensus 135 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aT-Vtichs 187 (287)
T PRK14173 135 EPCTPAGVVRL----LKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDAT-VTLAHS 187 (287)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEeCC
Confidence 46898887655 45678899999999999 577999999999999998 678776
No 124
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=91.71 E-value=0.39 Score=50.63 Aligned_cols=84 Identities=20% Similarity=0.149 Sum_probs=55.8
Q ss_pred cEEEEecCccHHHHHHHHHHHC---CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeC-CC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EA 492 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~---GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~-~~ 492 (629)
.||.|.|||+.|+.+++.|... +..+++|.|+ ++ ++. .... +. ...++ -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~-----~~-----~~~---~~~~---~~----------~~~~~~l~ 56 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN-----AA-----DLP---PALA---GR----------VALLDGLP 56 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC-----CH-----HHH---HHhh---cc----------CcccCCHH
Confidence 6899999999999999998753 3788899887 22 111 0000 00 11222 24
Q ss_pred CcccccccEEeecCCCCccChhhHHHHHHccCCCC
Q 006848 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGSNMP 527 (629)
Q Consensus 493 ei~~~~cDIliPcA~~n~It~enA~~lI~eGAN~P 527 (629)
+++..++|++++||....+-+ -+.+++..|.+.-
T Consensus 57 ~ll~~~~DlVVE~A~~~av~e-~~~~iL~~g~dlv 90 (267)
T PRK13301 57 GLLAWRPDLVVEAAGQQAIAE-HAEGCLTAGLDMI 90 (267)
T ss_pred HHhhcCCCEEEECCCHHHHHH-HHHHHHhcCCCEE
Confidence 456778999999998766654 5667777775543
No 125
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.69 E-value=0.41 Score=50.73 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=44.1
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+.. |++.+.+++||+|+|.| +..||.-++.+|.+.||. |+++++
T Consensus 138 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~At-Vt~chs 190 (278)
T PRK14172 138 LPCTPNSVITL----IKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENAT-VTICHS 190 (278)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCC
Confidence 46898887654 55668899999999999 577999999999999998 788887
No 126
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.57 E-value=4.7 Score=42.80 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=27.4
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|+|.|.|++|..+|..|.+.|..| .+.|.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V-~~~~r 35 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPV-RLWAR 35 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeE-EEEeC
Confidence 368999999999999999999999984 45554
No 127
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=91.54 E-value=0.53 Score=51.63 Aligned_cols=52 Identities=33% Similarity=0.347 Sum_probs=44.3
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+ ++|++.+.+++||+|+|.| +..||.-+|.+|.+.+|. |+++.+
T Consensus 211 ~PCTp~avi----elL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~AT-VTicHs 263 (364)
T PLN02616 211 VPCTPKGCI----ELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHS 263 (364)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCe-EEEeCC
Confidence 478988875 4556678999999999999 567899999999999999 688876
No 128
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.54 E-value=0.44 Score=50.60 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=44.2
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCc-cHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfG-NVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+ ++|++.+.+++||+|+|.|-+ .||.-+|.+|.+.||. |+++.+
T Consensus 137 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~At-Vti~hs 189 (281)
T PRK14183 137 VPCTPLGVM----ELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANAT-VDICHI 189 (281)
T ss_pred CCCcHHHHH----HHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 468988875 455667889999999999977 8999999999999998 578877
No 129
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.50 E-value=0.98 Score=46.02 Aligned_cols=110 Identities=20% Similarity=0.332 Sum_probs=63.6
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEe--CCCCc
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY--DEAKP 494 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i--~~~ei 494 (629)
++++|.|.|.||+.+|+.|.+.|..||.|=+ |+ +.+ .+.... .+... +... ++.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~------d~-----~~~---~~~~~~--~~~~~------~v~gd~t~~~~ 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDR------DE-----ERV---EEFLAD--ELDTH------VVIGDATDEDV 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEc------CH-----HHH---HHHhhh--hcceE------EEEecCCCHHH
Confidence 5899999999999999999999999766533 22 221 110010 00000 0000 11222
Q ss_pred c----cccccEEeecCCCCccChhhHHHHHHccCCCC------CCHHHHHHHHHcC--Ceeechhhc
Q 006848 495 W----NERCDVAFPCASQNEIDQSDAINLVNSGSNMP------CTPEAVDVLKKAN--VLIAPAMAA 549 (629)
Q Consensus 495 ~----~~~cDIliPcA~~n~It~enA~~lI~eGAN~P------~TpeA~~iL~erG--Il~iPD~~a 549 (629)
+ -.++|+++=++..++.|.--+.-...+ -|.| .+++..++|.+-| ..+.|...+
T Consensus 59 L~~agi~~aD~vva~t~~d~~N~i~~~la~~~-~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~ 124 (225)
T COG0569 59 LEEAGIDDADAVVAATGNDEVNSVLALLALKE-FGVPRVIARARNPEHEKVLEKLGADVIISPEKLA 124 (225)
T ss_pred HHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHh-cCCCcEEEEecCHHHHHHHHHcCCcEEECHHHHH
Confidence 2 248999999888777765333222221 1333 2577788888888 455666633
No 130
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.44 E-value=0.57 Score=49.77 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=36.5
Q ss_pred HHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 403 ~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++.+....+ ++.|++|+|.|+|.+|..+++.|...|++.|.|+|+
T Consensus 166 v~~a~~~~~-~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r 210 (311)
T cd05213 166 VELAEKIFG-NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR 210 (311)
T ss_pred HHHHHHHhC-CccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 444433333 489999999999999999999999988877888887
No 131
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.41 E-value=0.29 Score=47.20 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=26.9
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+...+|+|.|.|+||..+++.|..+|++++.+-
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d 50 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPD 50 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEecc
Confidence 4556899999999999999999999999965543
No 132
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.33 E-value=0.53 Score=50.02 Aligned_cols=53 Identities=19% Similarity=0.377 Sum_probs=44.2
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-.++|..||+.. |++.+.+++||+|+|.|- ..||.-+|.+|.+.||. |+++.+
T Consensus 135 ~~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~at-Vtichs 188 (282)
T PRK14169 135 VVASTPYGIMAL----LDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDAT-VTIAHS 188 (282)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEECC
Confidence 347898887654 556688999999999994 67899999999999999 678876
No 133
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.31 E-value=0.47 Score=50.47 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=43.7
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+.. |++.+.+++||+|+|.|- ..||.-+|.+|.+.||. |+++.+
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~at-Vtichs 189 (284)
T PRK14170 137 VPCTPAGIIEL----IKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENAT-VTIAHS 189 (284)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 46888877654 456789999999999995 56899999999999999 688877
No 134
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.20 E-value=0.64 Score=49.44 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=44.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHH--CCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIA--YGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e--~GAkVVaVSDs 448 (629)
.++|..||+..+ ++.+.+++||+|+|.| +..||.-+|.+|.+ .+|. |+++.+
T Consensus 138 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~at-Vtvchs 192 (284)
T PRK14193 138 LPCTPRGIVHLL----RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENAT-VTLCHT 192 (284)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCE-EEEeCC
Confidence 478988886554 5668899999999999 57799999999998 7998 688887
No 135
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=91.18 E-value=0.45 Score=50.53 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=44.6
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCcc-HHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.|-.|++. ++++.+.+|.|++++|.|-+| ||.-++.+|...+|+ |+|+.+
T Consensus 136 ~PCTp~gi~~----ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naT-VtvcHs 188 (283)
T COG0190 136 LPCTPAGIMT----LLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANAT-VTVCHS 188 (283)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCE-EEEEcC
Confidence 3689888754 456678899999999999766 899999999999999 799988
No 136
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=91.09 E-value=0.41 Score=53.26 Aligned_cols=50 Identities=10% Similarity=0.222 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 399 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 399 V~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
|.+++-..++..-.++.|++|.|.|.|..|..+|+.|.+.|++-|.|+.+
T Consensus 164 v~~~Av~la~~~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nR 213 (414)
T PRK13940 164 VAFSAITLAKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANR 213 (414)
T ss_pred HHHHHHHHHHHHhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 33333333333334689999999999999999999999999877899887
No 137
>PRK14982 acyl-ACP reductase; Provisional
Probab=91.08 E-value=0.55 Score=51.07 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=43.6
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHH-CCCEEEEEeCC
Q 006848 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDA 448 (629)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e-~GAkVVaVSDs 448 (629)
.|.+-....++.+.+.++.+++|++|+|.|. |.+|+.+|+.|.+ .|.+-|.+.++
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 4666666677777788888999999999998 8999999999986 46533555555
No 138
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.04 E-value=2.3 Score=46.95 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=24.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|.||..+|..|. .|..| .+.|.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~V-igvD~ 30 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEV-VALDI 30 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcE-EEEEC
Confidence 37999999999999997776 48884 55565
No 139
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.04 E-value=0.53 Score=50.16 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=43.9
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+. +|++.+.+++||+|+|.|- ..||.-++.+|.+.||. |+++.|
T Consensus 139 ~PcTp~av~~----lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~AT-Vtichs 191 (288)
T PRK14171 139 IPCTALGCLA----VIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCS-VTICHS 191 (288)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 4689888654 4556788999999999995 66899999999999999 688887
No 140
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.99 E-value=0.53 Score=50.03 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=43.9
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..|++..+ ++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++.+
T Consensus 138 ~PcTp~aii~lL----~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AT-Vt~chs 190 (282)
T PRK14180 138 ESCTPKGIMTML----REYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKAT-VTTCHR 190 (282)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEEcC
Confidence 468988886654 4578899999999999 567999999999999999 688876
No 141
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=90.96 E-value=1.4 Score=47.96 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=61.6
Q ss_pred cEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccccc------ccCC--ee
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR--SK 487 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~------~~p~--a~ 487 (629)
.+|+|.|||..|+.+.+.+.+. ..++|++-|. ..|.+.+..|.++-...|++..-.. .+.+ .+
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~--------~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~ 74 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDP--------AGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIR 74 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC--------CCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEE
Confidence 5899999999999999998765 5788888763 2355555555444333344321110 1111 11
Q ss_pred Ee---CCCC-cccccccEEeecCCCCccChhhHHHHHHcc
Q 006848 488 YY---DEAK-PWNERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 488 ~i---~~~e-i~~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
.. ++++ .|. .+|+++.|+.. ..+.+-|...+..|
T Consensus 75 v~~~~~~~~~~w~-gvDiVle~tG~-~~s~~~a~~hl~aG 112 (334)
T PRK08955 75 TTQNKAIADTDWS-GCDVVIEASGV-MKTKALLQAYLDQG 112 (334)
T ss_pred EEecCChhhCCcc-CCCEEEEccch-hhcHHHHHHHHHCC
Confidence 22 2222 477 99999999954 47777788777666
No 142
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.91 E-value=0.6 Score=49.94 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=43.3
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+. +|++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++.+
T Consensus 138 ~PcTp~aii~----lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~at-Vtv~hs 190 (297)
T PRK14186 138 RSCTPAGVMR----LLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANAT-VTIAHS 190 (297)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCC
Confidence 3588887754 456668899999999999 467899999999999999 677776
No 143
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=90.85 E-value=3.7 Score=46.61 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=81.0
Q ss_pred CCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCcchHHHHHHHHHHHHHc-C--CCCCCcEEEEecCccHH
Q 006848 352 EMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADM-N--KELKGLRCVVSGSGKIA 428 (629)
Q Consensus 352 DvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~-g--~~L~GkrVaIQGfGNVG 428 (629)
|++...-|++-+.-+|+.- ..+..+-.|+++-|... + ...+.++|+|=|||-+|
T Consensus 83 ~l~~~~~d~g~l~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~InGFGRIG 139 (477)
T PRK08289 83 DLGPARVDIGKLAVKYKAE-----------------------GDGSDVEAFVAEELADAVGGADDIEPRDVVLYGFGRIG 139 (477)
T ss_pred CCCcccccHHHHHHHHhhc-----------------------cCCCcHHHHHHHHHhhhhcCCCCCCCceEEEECCCHHH
Confidence 5555556777777777311 11234456666655532 2 23667899999999999
Q ss_pred HHHHHHHHHC-----CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccc--------cCC--eeEe---C
Q 006848 429 MHVLEKLIAY-----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKT--------YAR--SKYY---D 490 (629)
Q Consensus 429 ~~aA~~L~e~-----GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~--------~p~--a~~i---~ 490 (629)
+.+++.|.+. +.+||+|-+..+. --|.+.+..|.++-...|++..-..- ..| ...+ +
T Consensus 140 R~v~R~~~~~~~~~~~l~lvAIn~~~nd-----~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~I~v~~~~d 214 (477)
T PRK08289 140 RLLARLLIEKTGGGNGLRLRAIVVRKGS-----EGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQVIYANS 214 (477)
T ss_pred HHHHHHHHhccCCCCCeEEEEEecCCCC-----CCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEEEEEEecCC
Confidence 9999998865 5789999876442 23666665555544434443211100 001 1111 1
Q ss_pred CCC-cc-ccccc--EEeecCCCCccChhhHHHHHH
Q 006848 491 EAK-PW-NERCD--VAFPCASQNEIDQSDAINLVN 521 (629)
Q Consensus 491 ~~e-i~-~~~cD--IliPcA~~n~It~enA~~lI~ 521 (629)
+++ .| +..+| ++|.|+.- -.+.+.+...+.
T Consensus 215 P~~i~W~~~Gvd~aiVID~TG~-f~~~~~~~~HL~ 248 (477)
T PRK08289 215 PEEVDYTAYGINNALVVDNTGK-WRDEEGLSQHLK 248 (477)
T ss_pred hHHCCchhcCCCeEEEEeCccc-cCCHHHHhhchh
Confidence 222 36 46889 99999742 234444444333
No 144
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=90.79 E-value=0.63 Score=49.01 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=60.3
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCCCccc
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei~~ 496 (629)
++|.|.|+|+.|..+|+.|.+.|..| .+.|. + .+++..+ .+. +. ..+ . +.+++.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V-~~~dr-----~-----~~~~~~l---~~~-g~-~~~----~-----s~~~~~~ 55 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDC-VGYDH-----D-----QDAVKAM---KED-RT-TGV----A-----NLRELSQ 55 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEE-EEEEC-----C-----HHHHHHH---HHc-CC-ccc----C-----CHHHHHh
Confidence 37999999999999999999999985 45665 2 2333222 111 11 000 0 1111211
Q ss_pred --ccccEEeecCCCCccChhhHHH---------HHHccCCC-C-CCHHHHHHHHHcCCeeec
Q 006848 497 --ERCDVAFPCASQNEIDQSDAIN---------LVNSGSNM-P-CTPEAVDVLKKANVLIAP 545 (629)
Q Consensus 497 --~~cDIliPcA~~n~It~enA~~---------lI~eGAN~-P-~TpeA~~iL~erGIl~iP 545 (629)
..||+++-|.... ...+-... +|+...|. | .|.+..+.++++|+.|+-
T Consensus 56 ~~~~~dvIi~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 56 RLSAPRVVWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred hcCCCCEEEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence 2589988886655 22222211 33444554 2 566777788999998763
No 145
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=90.78 E-value=0.32 Score=55.48 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=31.7
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006848 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaV 445 (629)
+.+|.|+||.|.|+|++|+.+|+.|...|++|++.
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~ 167 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAY 167 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 45799999999999999999999999999997654
No 146
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=90.62 E-value=0.58 Score=50.87 Aligned_cols=38 Identities=18% Similarity=0.390 Sum_probs=31.8
Q ss_pred cCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 410 ~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++.++.||||.|.|+|..|+..|+.|...|..+ .-+..
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i-~y~~r 193 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVI-LYHSR 193 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhcccee-eeecc
Confidence 467899999999999999999999999999554 44433
No 147
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=90.59 E-value=1.2 Score=48.54 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=60.0
Q ss_pred cEEEEecCccHHHHHHHHHHHC---CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccccc------ccCC--
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR-- 485 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~---GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~------~~p~-- 485 (629)
.||+|=|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|.++-...|++..-.. .+.+
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 72 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT---------SDPRTNAHLLKYDSMLGKLNADISADENSITVNGKT 72 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC---------CCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEE
Confidence 4899999999999999987764 5789999774 255555545444333344321110 0111
Q ss_pred eeEe---CCCC-cc-cccccEEeecCCCCccChhhHHHHHHcc
Q 006848 486 SKYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 486 a~~i---~~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
.... ++++ .| +..+|+++.|+.. ..+.+.|...+..|
T Consensus 73 I~v~~~~dp~~~~W~~~gvDiV~e~tG~-f~s~~~a~~hl~aG 114 (337)
T PRK07403 73 IKCVSDRNPLNLPWKEWGIDLIIESTGV-FVTKEGASKHIQAG 114 (337)
T ss_pred EEEEEcCCcccCChhhcCCCEEEeccch-hhhHHHHHHHhhCC
Confidence 1111 2233 36 4699999999843 46777777666666
No 148
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.58 E-value=0.65 Score=48.47 Aligned_cols=51 Identities=25% Similarity=0.442 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.|.+.++++ ..+.++.+++|+|.|.|.+|+.++..|.+.|+.-|.|.++
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 45666555542 2456899999999999999999999999999544778777
No 149
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.56 E-value=0.52 Score=50.00 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=44.4
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCc-cHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfG-NVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+.. +++.+.+++|++|+|.|-+ .||..+|.+|...|+. |+++++
T Consensus 132 ~PcTp~av~~l----l~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~at-Vtv~hs 184 (279)
T PRK14178 132 APCTPNGIMTL----LHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADAT-VTICHS 184 (279)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCe-eEEEec
Confidence 46898887654 5566889999999999998 9999999999999999 677776
No 150
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=90.38 E-value=0.39 Score=48.80 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=34.7
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+|+|++|+|.|.|.||..=|++|...||+|+.||+.
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 3789999999999999999999999999999989886
No 151
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.34 E-value=0.79 Score=56.48 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=70.8
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCC-CE------------EEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccc
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYG-AI------------PVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYS 480 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~G-Ak------------VVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~ 480 (629)
.+.++|+|.|.|.||+..|+.|.+.. +. +|+|+|. ++ +++..+. +.
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-----~~-----~~a~~la---~~-------- 625 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-----YL-----KDAKETV---EG-------- 625 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-----CH-----HHHHHHH---Hh--------
Confidence 34679999999999999999998753 33 6899987 22 2221111 11
Q ss_pred cccCCe---eE-eCC-CCccc--ccccEEeecCCCCccChhhHHHHHHccCCCCC----CHH---HHHHHHHcCCeeech
Q 006848 481 KTYARS---KY-YDE-AKPWN--ERCDVAFPCASQNEIDQSDAINLVNSGSNMPC----TPE---AVDVLKKANVLIAPA 546 (629)
Q Consensus 481 ~~~p~a---~~-i~~-~ei~~--~~cDIliPcA~~n~It~enA~~lI~eGAN~P~----Tpe---A~~iL~erGIl~iPD 546 (629)
+|++ .. +++ +++.. .++|++|=|+.. ..+.+-|...|..|.+.-+ .++ ..+..+++||.++|+
T Consensus 626 --~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e 702 (1042)
T PLN02819 626 --IENAEAVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCE 702 (1042)
T ss_pred --cCCCceEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEEC
Confidence 1221 11 222 33443 479999988765 5677777777878866542 233 336678889998876
Q ss_pred h
Q 006848 547 M 547 (629)
Q Consensus 547 ~ 547 (629)
.
T Consensus 703 ~ 703 (1042)
T PLN02819 703 M 703 (1042)
T ss_pred C
Confidence 5
No 152
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=90.05 E-value=0.6 Score=50.32 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=76.0
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ 492 (629)
=+.||-++|.|+|+||...|..|.-.|++ |-|++. || +-+|...+ ..| +...-+
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~-VivTEi-----DP----I~ALQAaM---------eG~-------~V~tm~ 264 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGAR-VIVTEI-----DP----ICALQAAM---------EGY-------EVTTLE 264 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcE-EEEecc-----Cc----hHHHHHHh---------hcc-------EeeeHH
Confidence 47899999999999999999999999999 678776 44 22332111 122 222212
Q ss_pred CcccccccEEeecCC-CCccChhhHHH-----HHHc-----------cCCCC------CCHHHHHHHHHcC---Ceeech
Q 006848 493 KPWNERCDVAFPCAS-QNEIDQSDAIN-----LVNS-----------GSNMP------CTPEAVDVLKKAN---VLIAPA 546 (629)
Q Consensus 493 ei~~~~cDIliPcA~-~n~It~enA~~-----lI~e-----------GAN~P------~TpeA~~iL~erG---Il~iPD 546 (629)
+. ..++|||+-++. .++|+.+.-.+ +|++ +=|-| +-|+.+++.-..| |+++-+
T Consensus 265 ea-~~e~difVTtTGc~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr~iIlLAeG 343 (434)
T KOG1370|consen 265 EA-IREVDIFVTTTGCKDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNGKHIILLAEG 343 (434)
T ss_pred Hh-hhcCCEEEEccCCcchhhHHHHHhCcCCcEEeccccccceeehhhccCCcceeeecccccceeeccCCcEEEEEecC
Confidence 22 237799998876 57888776654 2221 12222 2355566665555 566777
Q ss_pred hhcccccce-eehhh
Q 006848 547 MAAGAGGVV-AGELE 560 (629)
Q Consensus 547 ~~aNAGGVi-vS~~E 560 (629)
-+.|-|-.+ .++|-
T Consensus 344 RLvNL~CatghpSFv 358 (434)
T KOG1370|consen 344 RLVNLGCATGHPSFV 358 (434)
T ss_pred ceeecccccCCCceE
Confidence 788888766 44443
No 153
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=89.98 E-value=0.49 Score=49.78 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.9
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|.|.|+|++|..+|+.|.+.|.+ |.+.|.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~-V~v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQ-LQVFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCe-EEEEcC
Confidence 3799999999999999999999988 456665
No 154
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.89 E-value=0.85 Score=48.49 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=43.7
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|..||+.. |++.+.+++||+|+|.|- ..||.-+|.+|.+.||. |+++.+
T Consensus 137 ~PcTp~avi~l----l~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~At-Vtichs 189 (282)
T PRK14182 137 RPCTPAGVMRM----LDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHAT-VTIAHS 189 (282)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 46898887654 456688999999999995 67899999999999998 688876
No 155
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.84 E-value=1.3 Score=48.32 Aligned_cols=98 Identities=18% Similarity=0.286 Sum_probs=60.0
Q ss_pred cEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccccc---c---cCC--ee
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK---T---YAR--SK 487 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~---~---~p~--a~ 487 (629)
.||+|-|||-+|+.+.+.+.+. ...||+|-|.. .|.+.+..|.++-...|++..-.. . ..+ ..
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~--------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~ 74 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPF--------MTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVH 74 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCC--------CChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEE
Confidence 5899999999999999987754 68999998741 244444434333222343321110 0 001 11
Q ss_pred Ee---CCCC-cc-cccccEEeecCCCCccChhhHHHHHHcc
Q 006848 488 YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 488 ~i---~~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
.+ ++.+ .| +..+|+++.|+.. ..+.+.|...+..|
T Consensus 75 ~~~~~dp~~lpW~~~gvDiVle~tG~-~~s~~~a~~~l~aG 114 (337)
T PTZ00023 75 VFFEKDPAAIPWGKNGVDVVCESTGV-FLTKEKAQAHLKGG 114 (337)
T ss_pred EEeCCChhhCCccccCCCEEEEecch-hcCHHHHHHHhhCC
Confidence 11 1222 47 5799999999854 47888888776666
No 156
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=89.84 E-value=1.6 Score=47.74 Aligned_cols=97 Identities=16% Similarity=0.276 Sum_probs=61.6
Q ss_pred cEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccccc------ccCC--ee
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR--SK 487 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~------~~p~--a~ 487 (629)
.||+|-|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|.++-...|++..-.. .+.+ ..
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~---------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~ 73 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS---------YPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIR 73 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEE
Confidence 4899999999999999987754 5799999774 355565555544333343321110 0111 12
Q ss_pred Ee---CCCC-cc-cccccEEeecCCCCccChhhHHHHHHcc
Q 006848 488 YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 488 ~i---~~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
.. ++++ .| +..+|+++.|+.. ..+.+.|...+..|
T Consensus 74 v~~~~dp~~~~W~~~gvDiVle~tG~-f~s~~~a~~hl~aG 113 (343)
T PRK07729 74 LLNNRDPKELPWTDLGIDIVIEATGK-FNSKEKAILHVEAG 113 (343)
T ss_pred EEEcCChhhCcccccCCCEEEEccch-hhhHhHHHHHHHcC
Confidence 22 2333 37 4699999999854 47777777766666
No 157
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=89.78 E-value=0.88 Score=47.41 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=54.1
Q ss_pred cEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCC-CCc
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKP 494 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~-~ei 494 (629)
+||+|.|+|++|+..++.|.+. +..+++|.+. +.. .++. .. .+. .+...+++ +++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~-----~~~---~~~~---~~------~~~------~~~~~~~d~~~l 58 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVP-----EHS---IDAV---RR------ALG------EAVRVVSSVDAL 58 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEc-----CCC---HHHH---hh------hhc------cCCeeeCCHHHh
Confidence 5899999999999999998875 6788888854 211 1110 00 000 01122222 334
Q ss_pred ccccccEEeecCCCCccChhhHHHHHHccCCCC
Q 006848 495 WNERCDVAFPCASQNEIDQSDAINLVNSGSNMP 527 (629)
Q Consensus 495 ~~~~cDIliPcA~~n~It~enA~~lI~eGAN~P 527 (629)
..++|+++.|+..... .+.+..++..|-|.-
T Consensus 59 -~~~~DvVve~t~~~~~-~e~~~~aL~aGk~Vv 89 (265)
T PRK13303 59 -PQRPDLVVECAGHAAL-KEHVVPILKAGIDCA 89 (265)
T ss_pred -ccCCCEEEECCCHHHH-HHHHHHHHHcCCCEE
Confidence 5679999999976533 667777777775543
No 158
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=89.71 E-value=0.62 Score=49.98 Aligned_cols=140 Identities=14% Similarity=0.173 Sum_probs=77.8
Q ss_pred CCcEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCC-C
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-A 492 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~-~ 492 (629)
+..+|+|.|.|++|...+.+|.+ .+..+++|+|. |++- +.+ . ..++.| +.. +.++ +
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi-----d~es---~gl---a-~A~~~G-i~~---------~~~~ie 60 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI-----DPES---DGL---A-RARRLG-VAT---------SAEGID 60 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC-----Chhh---HHH---H-HHHHcC-CCc---------ccCCHH
Confidence 45789999999999987777765 57899999998 5431 011 1 111111 111 1111 2
Q ss_pred Cccc----ccccEEeecCCCCccChhhHHHHHHcc---------CCCC-CCHH--HHHHHH--HcCCeeechhhcccccc
Q 006848 493 KPWN----ERCDVAFPCASQNEIDQSDAINLVNSG---------SNMP-CTPE--AVDVLK--KANVLIAPAMAAGAGGV 554 (629)
Q Consensus 493 ei~~----~~cDIliPcA~~n~It~enA~~lI~eG---------AN~P-~Tpe--A~~iL~--erGIl~iPD~~aNAGGV 554 (629)
+++. .++|+++-|+ ++..+.+.+.++...| +++| +-|+ .++.+. ..++...|.-..+.-=+
T Consensus 61 ~LL~~~~~~dIDiVf~AT-~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~v~ 139 (302)
T PRK08300 61 GLLAMPEFDDIDIVFDAT-SAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVA 139 (302)
T ss_pred HHHhCcCCCCCCEEEECC-CHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHHHH
Confidence 3333 3689999887 4557777777766665 5666 2222 234444 34666666654433221
Q ss_pred e------eehhhhh---cccCCCCCCHHHHHH
Q 006848 555 V------AGELELN---QECNMVHWSPEDFES 577 (629)
Q Consensus 555 i------vS~~E~~---qN~~~~~ws~eeV~~ 577 (629)
+ +.|-|++ +..+--.|++.-+++
T Consensus 140 Al~~v~~~~~~eIvat~~s~s~g~gtr~nidE 171 (302)
T PRK08300 140 AVSRVAPVHYAEIVASIASKSAGPGTRANIDE 171 (302)
T ss_pred HhcccCcCceeeeeeeehhhccCCcccccHHH
Confidence 1 2455655 333323476655444
No 159
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=89.53 E-value=1.1 Score=49.75 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=32.2
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++.|++|+|.|+|.+|..+++.|...|+.-|.|.+.
T Consensus 176 ~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 176 GSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 3589999999999999999999999999554677776
No 160
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.52 E-value=0.97 Score=47.57 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=26.7
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+|.|.|+|++|+..|+.|.+.|..| .|.|.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v-~v~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEV-VGYDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEE-EEEEC
Confidence 7899999999999999999999985 46676
No 161
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=89.31 E-value=0.49 Score=51.37 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=31.7
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
..|+|+||+|.|+|+.|...|+.|...|.+|+...+
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r 47 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVR 47 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEEC
Confidence 368999999999999999999999999999765433
No 162
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.23 E-value=0.61 Score=40.10 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=44.2
Q ss_pred EEEEecCccHHHHHHHHHHHCC---CEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEe--CCC
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYG---AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY--DEA 492 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~G---AkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i--~~~ 492 (629)
|+.|.|+||+|..+++.|.+.| .+|.-+++. ++ +++ .+++++. + .... +..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-----~~-----~~~---~~~~~~~----------~-~~~~~~~~~ 56 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-----SP-----EKA---AELAKEY----------G-VQATADDNE 56 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-----SH-----HHH---HHHHHHC----------T-TEEESEEHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-----cH-----HHH---HHHHHhh----------c-cccccCChH
Confidence 6889999999999999999999 887656566 33 332 2222221 1 1111 233
Q ss_pred CcccccccEEeecCCCCccC
Q 006848 493 KPWNERCDVAFPCASQNEID 512 (629)
Q Consensus 493 ei~~~~cDIliPcA~~n~It 512 (629)
++.. ++||+|-|-....+.
T Consensus 57 ~~~~-~advvilav~p~~~~ 75 (96)
T PF03807_consen 57 EAAQ-EADVVILAVKPQQLP 75 (96)
T ss_dssp HHHH-HTSEEEE-S-GGGHH
T ss_pred Hhhc-cCCEEEEEECHHHHH
Confidence 3444 899999998665543
No 163
>PRK08605 D-lactate dehydrogenase; Validated
Probab=89.07 E-value=0.47 Score=51.01 Aligned_cols=35 Identities=29% Similarity=0.545 Sum_probs=30.0
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHH-HHCCCEEEEE
Q 006848 411 NKELKGLRCVVSGSGKIAMHVLEKL-IAYGAIPVSV 445 (629)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aA~~L-~e~GAkVVaV 445 (629)
+.+|.|++|.|.|+|++|+.+|+.| ...|.+|++.
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~ 176 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAY 176 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4578999999999999999999999 5578997643
No 164
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=89.01 E-value=0.78 Score=51.90 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=62.7
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcC-cccccccccCCeeEeCCCCcc
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR-SLRDYSKTYARSKYYDEAKPW 495 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g-~l~~~~~~~p~a~~i~~~ei~ 495 (629)
.+|.|.|+|+.|..+|+.|.+.|.+ |.+-|. + .++.+.+.+.....+ .+.. .-+.+++.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~-V~v~dr-----~-----~~~~~~l~~~~~~~g~~i~~---------~~s~~e~v 61 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFK-ISVYNR-----T-----YEKTEEFVKKAKEGNTRVKG---------YHTLEELV 61 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCe-EEEEeC-----C-----HHHHHHHHHhhhhcCCccee---------cCCHHHHH
Confidence 3799999999999999999999998 566665 3 333322222111111 0100 01122333
Q ss_pred c--ccccEEeecCCCCccChhhHHH---------HHHccCCC-C-CCHHHHHHHHHcCCeee
Q 006848 496 N--ERCDVAFPCASQNEIDQSDAIN---------LVNSGSNM-P-CTPEAVDVLKKANVLIA 544 (629)
Q Consensus 496 ~--~~cDIliPcA~~n~It~enA~~---------lI~eGAN~-P-~TpeA~~iL~erGIl~i 544 (629)
. .++|+++-|.+......+-... +|+.+.|. | .|.+-.+.+.++||.|+
T Consensus 62 ~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fl 123 (470)
T PTZ00142 62 NSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYL 123 (470)
T ss_pred hcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 2 1589777775544433322221 34445555 3 45666688999999997
No 165
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.64 E-value=1.1 Score=48.08 Aligned_cols=52 Identities=27% Similarity=0.309 Sum_probs=43.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHHC----CCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e~----GAkVVaVSDs 448 (629)
.++|..||+.. |++.+.+++||+|+|.| +..||.-+|.+|.+. +|. |+++.+
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aT-Vtvchs 193 (297)
T PRK14167 137 KPCTPHGIQKL----LAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNAT-VTVCHS 193 (297)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCE-EEEeCC
Confidence 36898887654 55668899999999999 567899999999988 788 788877
No 166
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=88.62 E-value=0.78 Score=47.75 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=25.9
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+|.|.|+|++|..+|+.|.+.|..| .+.|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V-~~~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQL-HVTTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeE-EEEcC
Confidence 4889999999999999999999985 45565
No 167
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=88.61 E-value=1.1 Score=47.09 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 396 G~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|.+.+++ ..+.++++++|+|.|.|-.|+.++..|.+.|++-|.|.++
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 667666654 3455789999999999999999999999999976777776
No 168
>PRK06141 ornithine cyclodeaminase; Validated
Probab=88.56 E-value=2.2 Score=45.48 Aligned_cols=113 Identities=15% Similarity=0.042 Sum_probs=64.9
Q ss_pred CCCcEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCC-
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE- 491 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~- 491 (629)
...++|.|.|.|..|+..++.+.. .+.+=|.|.+. + .++...+.+...+.+ ......+.
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R-----s-----~~~a~~~a~~~~~~g---------~~~~~~~~~ 183 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR-----D-----PAKAEALAAELRAQG---------FDAEVVTDL 183 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC-----C-----HHHHHHHHHHHHhcC---------CceEEeCCH
Confidence 367899999999999999986665 56544777776 2 233222222111111 01222211
Q ss_pred CCcccccccEEeecCCCC--ccChhhHHH---HHHccCCCCCCHHHHHHHHHcCCeeech
Q 006848 492 AKPWNERCDVAFPCASQN--EIDQSDAIN---LVNSGSNMPCTPEAVDVLKKANVLIAPA 546 (629)
Q Consensus 492 ~ei~~~~cDIliPcA~~n--~It~enA~~---lI~eGAN~P~TpeA~~iL~erGIl~iPD 546 (629)
++.. .+|||++=|+... .++.+.... +..-|++.|...|....+.+++..|+=|
T Consensus 184 ~~av-~~aDIVi~aT~s~~pvl~~~~l~~g~~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 184 EAAV-RQADIISCATLSTEPLVRGEWLKPGTHLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred HHHH-hcCCEEEEeeCCCCCEecHHHcCCCCEEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 1122 3899997666532 244433321 3335688888888777777787766644
No 169
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=88.49 E-value=0.4 Score=42.63 Aligned_cols=103 Identities=22% Similarity=0.297 Sum_probs=61.8
Q ss_pred cEEEEecCccHHHHHHHHHHHC--CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEe-CCCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAK 493 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~--GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i-~~~e 493 (629)
.||+|.|+|+.|+.-...+.+. +.++++|+|. ++ +.. ....+. + +...+ +-++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~-----~~-----~~~---~~~~~~----------~-~~~~~~~~~~ 56 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP-----DP-----ERA---EAFAEK----------Y-GIPVYTDLEE 56 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS-----SH-----HHH---HHHHHH----------T-TSEEESSHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC-----CH-----HHH---HHHHHH----------h-cccchhHHHH
Confidence 3799999999999888777765 6799999997 32 222 111111 1 11122 2344
Q ss_pred ccc-ccccEEeecCCCCccChhhHHHHHHccCCC----C--CC-HHHH---HHHHHcCCeee
Q 006848 494 PWN-ERCDVAFPCASQNEIDQSDAINLVNSGSNM----P--CT-PEAV---DVLKKANVLIA 544 (629)
Q Consensus 494 i~~-~~cDIliPcA~~n~It~enA~~lI~eGAN~----P--~T-peA~---~iL~erGIl~i 544 (629)
+++ .++|+++=|+.. ..+.+-+..++..|-+- | .| .++. +..+++|+.+.
T Consensus 57 ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 57 LLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp HHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred HHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 554 479999988754 44666666777666221 2 23 2333 44477776653
No 170
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=88.47 E-value=0.95 Score=51.25 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=27.6
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|++|...|..|...|.. |.+-|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~-V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGID-VAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeC
Confidence 5899999999999999999999998 567676
No 171
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=88.44 E-value=0.5 Score=51.10 Aligned_cols=109 Identities=21% Similarity=0.244 Sum_probs=59.2
Q ss_pred EEEecCccHHHHHHHHHHHCCCE-EEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeC--C-CCc
Q 006848 419 CVVSGSGKIAMHVLEKLIAYGAI-PVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD--E-AKP 494 (629)
Q Consensus 419 VaIQGfGNVG~~aA~~L~e~GAk-VVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~--~-~ei 494 (629)
|.|.|+|.||+.+++.|.+.+-. =|.|+|. +.+++..+.+.. ....+.. ..++ + +++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r----------~~~~~~~~~~~~-~~~~~~~--------~~~d~~~~~~l 61 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR----------NPEKAERLAEKL-LGDRVEA--------VQVDVNDPESL 61 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES----------SHHHHHHHHT---TTTTEEE--------EE--TTTHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC----------CHHHHHHHHhhc-cccceeE--------EEEecCCHHHH
Confidence 67899999999999999998753 4788887 333432221100 1111111 1111 1 122
Q ss_pred c--cccccEEeecCCCCccChhhHHHHHHccCCCCCC-------HHHHHHHHHcCCeeechh
Q 006848 495 W--NERCDVAFPCASQNEIDQSDAINLVNSGSNMPCT-------PEAVDVLKKANVLIAPAM 547 (629)
Q Consensus 495 ~--~~~cDIliPcA~~n~It~enA~~lI~eGAN~P~T-------peA~~iL~erGIl~iPD~ 547 (629)
- -.+|||+|-|+... .+..-+...+..|.|.-.+ .+.++..+++|+.++++.
T Consensus 62 ~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~ 122 (386)
T PF03435_consen 62 AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGC 122 (386)
T ss_dssp HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-
T ss_pred HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCc
Confidence 1 24899999999766 4444445567777554322 112356678899999876
No 172
>PRK11579 putative oxidoreductase; Provisional
Probab=88.43 E-value=1.5 Score=46.81 Aligned_cols=102 Identities=19% Similarity=0.235 Sum_probs=62.4
Q ss_pred cEEEEecCccHHH-HHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEe-CCCC
Q 006848 417 LRCVVSGSGKIAM-HVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAK 493 (629)
Q Consensus 417 krVaIQGfGNVG~-~aA~~L~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i-~~~e 493 (629)
.||+|.|+|.+|. +.+..+.. .++++++|+|. |+ ++. ++. +++.... +-++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~-----~~-----~~~------~~~----------~~~~~~~~~~~e 58 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS-----DA-----TKV------KAD----------WPTVTVVSEPQH 58 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC-----CH-----HHH------Hhh----------CCCCceeCCHHH
Confidence 5899999999997 45666655 47999999997 32 221 111 1222222 2345
Q ss_pred ccc-ccccEEeecCCCCccChhhHHHHHHccC----CCCC--C-HHHHH---HHHHcCCeeec
Q 006848 494 PWN-ERCDVAFPCASQNEIDQSDAINLVNSGS----NMPC--T-PEAVD---VLKKANVLIAP 545 (629)
Q Consensus 494 i~~-~~cDIliPcA~~n~It~enA~~lI~eGA----N~P~--T-peA~~---iL~erGIl~iP 545 (629)
++. .++|+++=|+ .+..+.+-+...+..|- .-|. | .++.+ ..+++|+.+..
T Consensus 59 ll~~~~vD~V~I~t-p~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v 120 (346)
T PRK11579 59 LFNDPNIDLIVIPT-PNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSV 120 (346)
T ss_pred HhcCCCCCEEEEcC-CcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 553 5789999775 45567777777777662 2342 3 34443 34777877653
No 173
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=88.36 E-value=0.95 Score=49.39 Aligned_cols=52 Identities=25% Similarity=0.198 Sum_probs=43.9
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.|..||+..+ ++.+.+++||+|+|.|= ..||.-+|.+|.+.||. |+++.+
T Consensus 194 ~PCTp~avi~LL----~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~AT-VTicHs 246 (345)
T PLN02897 194 VSCTPKGCVELL----IRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDAT-VSTVHA 246 (345)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCE-EEEEcC
Confidence 478988886554 56788999999999994 66899999999999999 678776
No 174
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=88.29 E-value=1.8 Score=46.10 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=28.4
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+|+++|+|+.|+..|..|.+.|.. |.|.|.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~-v~v~~r 31 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHE-VTVYNR 31 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCE-EEEEeC
Confidence 4799999999999999999999998 688887
No 175
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=88.28 E-value=1.1 Score=49.85 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=32.4
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++.|++|+|.|.|.+|..+++.|...|+.-|.|++.
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 689999999999999999999999999855777776
No 176
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.25 E-value=0.68 Score=50.91 Aligned_cols=35 Identities=34% Similarity=0.496 Sum_probs=31.8
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++++|+|.|.|.+|..+|+.|.+.|++ |.++|.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~-V~~~d~ 36 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAK-VILTDE 36 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 57899999999999999999999999999 567776
No 177
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.20 E-value=0.69 Score=50.82 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=31.9
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++|.|.|.|..|..+|+.|.+.|++ |.++|.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~-V~~~d~ 36 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGAN-VTVNDG 36 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcC
Confidence 46899999999999999999999999999 577786
No 178
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.94 E-value=1.4 Score=47.12 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=43.1
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHC----CCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAY----GAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~----GAkVVaVSDs 448 (629)
.++|..||+.. |++.+.+++||+|+|.|= ..||.-+|.+|.+. +|. |+++.+
T Consensus 133 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~At-Vtvchs 189 (287)
T PRK14181 133 IPCTPAGIIEL----LKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNAT-VTLLHS 189 (287)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCE-EEEeCC
Confidence 36898887655 456688999999999994 67899999999998 788 678776
No 179
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=87.92 E-value=2.1 Score=48.15 Aligned_cols=97 Identities=21% Similarity=0.230 Sum_probs=60.8
Q ss_pred cEEEEecCccHHHHHHHHHHHC---CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccccc-------ccCC-
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK-------TYAR- 485 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~---GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~-------~~p~- 485 (629)
.||+|=|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|.++-...|++..-.+ .+.+
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~---------~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk 146 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGK 146 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC---------CCHHHHHHHHccccCCCCcCCceEECCCCEEEECCE
Confidence 6899999999999999987753 5799999875 245555445443333344321110 0111
Q ss_pred -eeEeCC---CC-cc-cccccEEeecCCCCccChhhHHHHHHcc
Q 006848 486 -SKYYDE---AK-PW-NERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 486 -a~~i~~---~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
....+. .+ .| +..+||++.|+. ...+.+.|...+..|
T Consensus 147 ~I~V~~~~dp~~l~W~~~gVDiViE~TG-~f~s~e~a~~hl~aG 189 (442)
T PLN02237 147 PIKVVSNRDPLKLPWAELGIDIVIEGTG-VFVDGPGAGKHIQAG 189 (442)
T ss_pred EEEEEEcCCchhCChhhcCCCEEEEccC-hhhhHHHHHHHHhCC
Confidence 111111 12 46 479999999984 457777787777666
No 180
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.84 E-value=4.1 Score=47.39 Aligned_cols=144 Identities=14% Similarity=0.139 Sum_probs=77.9
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCCCcc-
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW- 495 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei~- 495 (629)
.+|+|.|+|.+|+.+++.|.+.|..+ .+-|. || +.+ ...++. + ..-+ |.++ +..+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~v-vvID~-----d~-----~~v---~~~~~~-g-~~v~---~GDa---t~~~~L~ 458 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRI-TVLER-----DI-----SAV---NLMRKY-G-YKVY---YGDA---TQLELLR 458 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCE-EEEEC-----CH-----HHH---HHHHhC-C-CeEE---EeeC---CCHHHHH
Confidence 57999999999999999999999985 55565 43 332 222221 1 1111 1111 122233
Q ss_pred ---cccccEEeecCCCCccChhhHHHHHHcc-CCCC-----CCHHHHHHHHHcCCee-echhhcccccceeehhhhh-cc
Q 006848 496 ---NERCDVAFPCASQNEIDQSDAINLVNSG-SNMP-----CTPEAVDVLKKANVLI-APAMAAGAGGVVAGELELN-QE 564 (629)
Q Consensus 496 ---~~~cDIliPcA~~n~It~enA~~lI~eG-AN~P-----~TpeA~~iL~erGIl~-iPD~~aNAGGVivS~~E~~-qN 564 (629)
-.+||+++=|.-..+.|..-+ ..+.+- .|.+ .+++..+.|++.|+.. +|+-...+ +++. +-
T Consensus 459 ~agi~~A~~vv~~~~d~~~n~~i~-~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~-------l~l~~~~ 530 (601)
T PRK03659 459 AAGAEKAEAIVITCNEPEDTMKIV-ELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSA-------LELGRKT 530 (601)
T ss_pred hcCCccCCEEEEEeCCHHHHHHHH-HHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHH-------HHHHHHH
Confidence 237898777664432222111 122221 2222 2578889999999965 46654433 2221 11
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHH
Q 006848 565 CNMVHWSPEDFESKLQEAMKQTYQRA 590 (629)
Q Consensus 565 ~~~~~ws~eeV~~rL~~~m~~~~~~v 590 (629)
+..+..+.+++.+.+++.-.+.+..+
T Consensus 531 L~~lg~~~~~~~~~~~~~r~~~~~~~ 556 (601)
T PRK03659 531 LVSLGMHPHQAQRAQQHFRRLDMRML 556 (601)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 22345677888777754433344433
No 181
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=87.81 E-value=10 Score=43.74 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCcchHHHHHHHH
Q 006848 325 NEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQ 404 (629)
Q Consensus 325 ~El~R~~r~f~~eL~r~IGp~~DVpApDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~ 404 (629)
.|--.|...||.+..+-.||++=|-=+|++.--.-. +.+.|+.-...+- +--.-||-=++.++-
T Consensus 235 ~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfr--lL~kYr~~~c~FN--------------DDIQGTaaValAgll 298 (582)
T KOG1257|consen 235 KEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAFR--LLEKYRNKYCMFN--------------DDIQGTAAVALAGLL 298 (582)
T ss_pred cHHHHHHHHHHHHHHHHhCcceEEEehhccchhHHH--HHHHhccccceec--------------ccccchhHHHHHHHH
Confidence 455568899999999888999999999998753322 3455553322211 112335544556677
Q ss_pred HHHHHcCCCCCCcEEEEecCccHHHHHHHHHH----HCCC------EEEEEeCCCCceeCCC--CCCHHHHhHHHHHHhh
Q 006848 405 LILADMNKELKGLRCVVSGSGKIAMHVLEKLI----AYGA------IPVSVSDAKGYLVDED--GFDYMKISFLRDIKSQ 472 (629)
Q Consensus 405 ~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~----e~GA------kVVaVSDs~G~Iydpd--GLD~~~L~~l~~~k~~ 472 (629)
.+++..+..|+.-++.+.|.|..|..+|+.+. ..|. |=+-+-|++|-|.... .++..+.
T Consensus 299 aa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~--------- 369 (582)
T KOG1257|consen 299 AALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKK--------- 369 (582)
T ss_pred HHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEEEEecCceeeccccCCCChhhc---------
Confidence 77787889999999999999999999998765 3452 2267777777666433 3332221
Q ss_pred cCcccccccccCCeeEeCCCC-cccccccEEeecCC-CCccChhhHHH
Q 006848 473 QRSLRDYSKTYARSKYYDEAK-PWNERCDVAFPCAS-QNEIDQSDAIN 518 (629)
Q Consensus 473 ~g~l~~~~~~~p~a~~i~~~e-i~~~~cDIliPcA~-~n~It~enA~~ 518 (629)
.|++..+..+ +-.+ +-.++..|||=|+. .+..|++-.+.
T Consensus 370 -----~fAk~~~~~~--~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~ 410 (582)
T KOG1257|consen 370 -----PFAKDHEEIK--DLEEAVKEVKPTVLIGASGVGGAFTEEVLRA 410 (582)
T ss_pred -----cccccChHHH--HHHHHHHhcCCcEEEecccCCccCCHHHHHH
Confidence 1111111000 0011 22578899999976 57788865543
No 182
>PRK07680 late competence protein ComER; Validated
Probab=87.74 E-value=1.1 Score=46.31 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=26.1
Q ss_pred EEEEecCccHHHHHHHHHHHCCC---EEEEEeCC
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYGA---IPVSVSDA 448 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GA---kVVaVSDs 448 (629)
+|.|.|+|++|..+++.|.+.|. .-|.|.|.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 68999999999999999999884 23667766
No 183
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.72 E-value=1.1 Score=48.83 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=32.9
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~ 449 (629)
.|++++|+|.|.|-+|..+|+.|...|..=+.+.|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4788999999999999999999999998667888763
No 184
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.60 E-value=0.69 Score=50.10 Aligned_cols=37 Identities=16% Similarity=0.370 Sum_probs=33.4
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~ 449 (629)
.|++++|+|.|.|.+|.++|+.|.+.|..-++|.|.+
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5788999999999999999999999998668888874
No 185
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=87.57 E-value=1.2 Score=48.98 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=57.5
Q ss_pred cEEEEecCccHHHHHHHHHHHC-----CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccccccc----------
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY-----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK---------- 481 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-----GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~---------- 481 (629)
.||+|=|||-+|+.+.+.+.+. ...||+|-|..+ |.+.+..|.++-...|++..-..
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~--------~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~ 75 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMST--------NAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKT 75 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCC--------ChhheeeeeeeecCCCCcCCceeeccccccccc
Confidence 5899999999999999998874 479999998421 22222222222212222210000
Q ss_pred -c---cCC--eeEe----CCCC-cc-cccccEEeecCCCCccChhhHHHHHHccCC
Q 006848 482 -T---YAR--SKYY----DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGSN 525 (629)
Q Consensus 482 -~---~p~--a~~i----~~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eGAN 525 (629)
. ..+ ...+ ++.+ .| +..+|+++.|+. --.+.+.|...+..||.
T Consensus 76 ~~~l~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG-~f~t~~~a~~Hl~~GAK 130 (361)
T PTZ00434 76 DDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTG-LFTDKLAAEGHLKGGAK 130 (361)
T ss_pred CCEEEECCEEEEEEEecCChhhCchhhcCCCEEEeCce-eeccHHHHhhhhhcCCC
Confidence 0 011 1222 1222 37 579999999984 34566677766666643
No 186
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.53 E-value=1.4 Score=47.09 Aligned_cols=52 Identities=27% Similarity=0.460 Sum_probs=42.6
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHH----CCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIA----YGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e----~GAkVVaVSDs 448 (629)
.++|..|+ -+++++.+.+++||+|+|.| +..||.-+|.+|.+ .|+. |+++.+
T Consensus 139 ~PcTp~ai----l~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~at-Vt~~hs 195 (295)
T PRK14174 139 VSCTPYGI----LELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCT-VTICHS 195 (295)
T ss_pred CCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCE-EEEEeC
Confidence 46898887 45566778899999999999 56789999999988 6888 677776
No 187
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=87.52 E-value=1.3 Score=40.38 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=31.1
Q ss_pred EEEEec-CccHHHHHHHHHHHC-CCEEEEEeCCCCceeCC-CCCCHHH
Q 006848 418 RCVVSG-SGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDE-DGFDYMK 462 (629)
Q Consensus 418 rVaIQG-fGNVG~~aA~~L~e~-GAkVVaVSDs~G~Iydp-dGLD~~~ 462 (629)
||+|.| .|.||+.+++.|.+. ...++.+..+ .+ .|..+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~-----~~~~g~~~~~ 43 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSS-----SRSAGKPLSE 43 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEES-----TTTTTSBHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeee-----ccccCCeeeh
Confidence 689999 999999999999984 5677787776 33 5665443
No 188
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.40 E-value=1.1 Score=46.85 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=27.5
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|++|..+|..|...|..| .+-|.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V-~l~d~ 35 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDV-LLNDV 35 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeE-EEEeC
Confidence 58999999999999999999999984 56676
No 189
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=87.40 E-value=1.2 Score=48.98 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=32.5
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~ 449 (629)
.|+..+|+|.|.|-+|..+|+.|...|..=+.+.|.+
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4678899999999999999999999997667888864
No 190
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.36 E-value=0.9 Score=50.62 Aligned_cols=39 Identities=33% Similarity=0.537 Sum_probs=33.9
Q ss_pred HcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 409 DMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 409 ~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+.+.++++++|+|.|.|.+|..+|+.|.+.|.+ |.++|.
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~ 47 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDD 47 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 445567899999999999999999999999999 567775
No 191
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=87.35 E-value=1.5 Score=46.42 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 396 G~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|.+.+++ ..+.+++|++|+|.|.|-.++.++-.|...|++-|.|.++
T Consensus 108 ~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nR 156 (288)
T PRK12749 108 GTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNR 156 (288)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 667666665 4567889999999999999999999999999877889887
No 192
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.22 E-value=1.3 Score=47.50 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=43.1
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHHC----CCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e~----GAkVVaVSDs 448 (629)
.++|..||+..+ ++.+.+++||+|+|.| +..||.-+|.+|.+. +|. |+++.+
T Consensus 141 ~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~at-Vtv~hs 197 (297)
T PRK14168 141 LPCTPAGIQEML----VRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANAT-VTIVHT 197 (297)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCE-EEEecC
Confidence 368988876554 4568999999999999 577999999999998 688 678776
No 193
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.20 E-value=1.2 Score=47.41 Aligned_cols=52 Identities=25% Similarity=0.247 Sum_probs=42.9
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHH----CCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIA----YGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e----~GAkVVaVSDs 448 (629)
.++|..||+. +|++.+.+++||+|+|.| +..||.-+|.+|.+ .+|. |+++++
T Consensus 137 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~At-Vt~~hs 193 (286)
T PRK14184 137 RPCTPAGVMT----LLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANAT-VTVCHS 193 (286)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCE-EEEEeC
Confidence 3689888765 455678899999999999 56789999999999 8899 577776
No 194
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.18 E-value=0.59 Score=43.23 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=29.2
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+||+|.|.|.||..+|+.|...|..-+.+.|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 579999999999999999999999976888875
No 195
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=87.11 E-value=0.82 Score=45.10 Aligned_cols=36 Identities=31% Similarity=0.249 Sum_probs=28.8
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKG 450 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G 450 (629)
|++|+|+|.|+|+-|..-|.-|.+.|.. |.|....|
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~-V~Vglr~~ 37 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVN-VIVGLREG 37 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-E-EEEEE-TT
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCC-EEEEecCC
Confidence 5899999999999999999999999998 56666544
No 196
>PRK05717 oxidoreductase; Validated
Probab=86.99 E-value=1 Score=45.02 Aligned_cols=37 Identities=30% Similarity=0.296 Sum_probs=31.5
Q ss_pred CCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 411 g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+.+++|++|+|.|. |.+|+++|+.|.+.|++|+.+ |.
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~-~~ 42 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLA-DL 42 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEE-cC
Confidence 35789999999985 999999999999999996554 44
No 197
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=86.94 E-value=1.1 Score=44.16 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.4
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
.+++++|+|.| .|.+|.++++.|.+.|++|+.++-
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 46789999999 699999999999999999766643
No 198
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=86.92 E-value=1.7 Score=46.06 Aligned_cols=50 Identities=20% Similarity=0.073 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-|+|.+.+++. .+.++++++|+|.|.|-+|++++-.|.+.|++-|.|.++
T Consensus 110 D~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 159 (283)
T PRK14027 110 DVSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL 159 (283)
T ss_pred CHHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 36777777753 334678999999999999999999999999877888887
No 199
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=86.83 E-value=1.2 Score=44.58 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHH--HHCCCEEEEEeCC
Q 006848 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKL--IAYGAIPVSVSDA 448 (629)
Q Consensus 396 G~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L--~e~GAkVVaVSDs 448 (629)
||=|.+-++..-+.++.. ...+|+|.|+|++|..+++.+ ...|.+++++.|.
T Consensus 65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~ 118 (213)
T PRK05472 65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV 118 (213)
T ss_pred CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC
Confidence 576766666555556555 567999999999999999864 3578999999987
No 200
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=86.81 E-value=0.92 Score=48.72 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=30.0
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
|+|++|+|.|+||.|..+|+.|.+.|.+|+...+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~ 35 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRK 35 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECc
Confidence 57999999999999999999999999886544443
No 201
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=86.80 E-value=1.5 Score=50.25 Aligned_cols=54 Identities=20% Similarity=0.128 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHHHHH------cCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 394 ATGYGLVFFAQLILAD------MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 394 ATG~GV~~~~~~~l~~------~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
--++|++.+++..+.. .+.++++++|+|.|.|.+|+.++..|.+.|++ |.|.+.
T Consensus 351 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~-V~i~nR 410 (529)
T PLN02520 351 TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGAR-VVIANR 410 (529)
T ss_pred ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEcC
Confidence 3468888888754321 24578999999999999999999999999997 557776
No 202
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=86.75 E-value=0.78 Score=50.14 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=28.2
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-++|+|.||||.|+..|+.|...|..+++.+-+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRs 84 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRS 84 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcc
Confidence 468999999999999999999999996555433
No 203
>PRK08628 short chain dehydrogenase; Provisional
Probab=86.65 E-value=1 Score=44.92 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006848 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 411 g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVS 446 (629)
+.+++|++++|.| .|.+|.++|+.|.+.|++|+.++
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~ 38 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFG 38 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEc
Confidence 4579999999998 58899999999999999965553
No 204
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.64 E-value=0.88 Score=46.15 Aligned_cols=36 Identities=31% Similarity=0.402 Sum_probs=32.4
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|..++|+|.|+|-+|.++|+.|...|..-+.+.|.
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 467899999999999999999999999877888875
No 205
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.60 E-value=0.87 Score=51.09 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=31.9
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.|++|+|.|+|.-|..+|++|.+.|++ |.++|.
T Consensus 5 ~~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~ 39 (468)
T PRK04690 5 QLEGRRVALWGWGREGRAAYRALRAHLPA-QALTLF 39 (468)
T ss_pred hcCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcC
Confidence 35789999999999999999999999999 678886
No 206
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=86.50 E-value=1.2 Score=50.73 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=28.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|..|...|..|...|.. |.+-|.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~-V~l~D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHT-VLLYDA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEeC
Confidence 5899999999999999999999998 567787
No 207
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=86.45 E-value=0.96 Score=49.08 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=29.8
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaV 445 (629)
.|+|++|+|.|+|++|...|+.|.+.|.+|+..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~ 46 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVG 46 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEE
Confidence 578999999999999999999999999986543
No 208
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.41 E-value=1.8 Score=47.33 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=30.4
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+.+++|+|.|+|.+|..+++.|..+|++ |.+.|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~-V~v~d~ 198 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGAT-VTILDI 198 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCe-EEEEEC
Confidence 5778999999999999999999999998 666676
No 209
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=86.31 E-value=2.1 Score=46.42 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=28.7
Q ss_pred cEEEEecCccHHHHHHHHHHH-CCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e-~GAkVVaVSDs 448 (629)
.||+|.|||.+|+.+++.+.+ .+.++++|+|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~ 34 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT 34 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC
Confidence 489999999999999998875 57899999997
No 210
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.29 E-value=1.3 Score=46.31 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=27.3
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|.+|..+|..|.+.|..| .+-|.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V-~~~d~ 32 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQT-TLVDI 32 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcE-EEEeC
Confidence 47999999999999999999999985 56676
No 211
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.28 E-value=0.87 Score=48.00 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=31.2
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|++.+|+|.|.|-||.++|+.|.+.|..=++|.|.
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~ 62 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDM 62 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 468899999999999999999999999544777775
No 212
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.22 E-value=0.71 Score=50.02 Aligned_cols=52 Identities=29% Similarity=0.271 Sum_probs=38.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCC-EEEEEeCC
Q 006848 389 SLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSDA 448 (629)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GA-kVVaVSDs 448 (629)
++-.-.||||.+.-+- .=-+|.+|+|-|+|.||.++++-....|| +|++| |.
T Consensus 173 LgCGvsTG~GAa~~~A-------kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv-Di 225 (375)
T KOG0022|consen 173 LGCGVSTGYGAAWNTA-------KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV-DI 225 (375)
T ss_pred eeccccccchhhhhhc-------ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEE-ec
Confidence 3444689999743221 12378999999999999999998888897 66665 44
No 213
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=86.13 E-value=3.2 Score=45.16 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=26.5
Q ss_pred EEEecCccHHHHHHHHHHH-CCCEEEEEeCC
Q 006848 419 CVVSGSGKIAMHVLEKLIA-YGAIPVSVSDA 448 (629)
Q Consensus 419 VaIQGfGNVG~~aA~~L~e-~GAkVVaVSDs 448 (629)
|+|.|||.+|+..++.+.+ .+.+||+|+|.
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~ 31 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT 31 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC
Confidence 5899999999999998775 57899999996
No 214
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.07 E-value=6 Score=46.28 Aligned_cols=136 Identities=16% Similarity=0.168 Sum_probs=71.4
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCCCccc
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei~~ 496 (629)
.+|+|.|||.+|+.+++.|.+.|.+++ +-|. |+ +.++ ..++. + ..-| |.++ +..+++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~-----d~-----~~v~---~~~~~-g-~~v~---~GDa---t~~~~L~ 458 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMT-VLDH-----DP-----DHIE---TLRKF-G-MKVF---YGDA---TRMDLLE 458 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEE-EEEC-----CH-----HHHH---HHHhc-C-CeEE---EEeC---CCHHHHH
Confidence 689999999999999999999999855 4476 43 3322 22221 1 1111 1111 1222331
Q ss_pred ----ccccEEeecCCCCccChhhHHHHHHc-cCCCC-----CCHHHHHHHHHcCCeee-chhhcccccceeehhhhhccc
Q 006848 497 ----ERCDVAFPCASQNEIDQSDAINLVNS-GSNMP-----CTPEAVDVLKKANVLIA-PAMAAGAGGVVAGELELNQEC 565 (629)
Q Consensus 497 ----~~cDIliPcA~~n~It~enA~~lI~e-GAN~P-----~TpeA~~iL~erGIl~i-PD~~aNAGGVivS~~E~~qN~ 565 (629)
.++|.++-|.-..+.|..-+. .+.+ --|.+ .+++..+.|++.|+.++ |...-.+=-+....++.
T Consensus 459 ~agi~~A~~vvv~~~d~~~n~~i~~-~ar~~~p~~~iiaRa~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~~~L~~---- 533 (621)
T PRK03562 459 SAGAAKAEVLINAIDDPQTSLQLVE-LVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGRLVLES---- 533 (621)
T ss_pred hcCCCcCCEEEEEeCCHHHHHHHHH-HHHHhCCCCeEEEEECCHHHHHHHHHCCCCEEehhhHhHHHHHHHHHHHH----
Confidence 378888877744333332221 1111 11222 24677788999998754 44433222222222222
Q ss_pred CCCCCCHHHHHHHHHH
Q 006848 566 NMVHWSPEDFESKLQE 581 (629)
Q Consensus 566 ~~~~ws~eeV~~rL~~ 581 (629)
+.-+++++.+..+.
T Consensus 534 --lg~~~~~~~~~~~~ 547 (621)
T PRK03562 534 --LGLGPYEARERADR 547 (621)
T ss_pred --cCCCHHHHHHHHHH
Confidence 23455677665543
No 215
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.05 E-value=1.3 Score=46.16 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=27.4
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|++|..+|..|...|.. |.+.|.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~-V~~~d~ 35 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMD-VWLLDS 35 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCe-EEEEeC
Confidence 5899999999999999999999988 456676
No 216
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.89 E-value=1.1 Score=46.15 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=32.2
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|++|+|.|.|.||..=++.|.+.||+|.-||-.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 677999999999999999999999999998777654
No 217
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.88 E-value=1.2 Score=46.75 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=30.9
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFD 459 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD 459 (629)
++|+|.|.|..|...|..|...|.. |.+-|. +++.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~-----~~~~~~ 42 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFET-----TEELAT 42 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCE-EEEEEC-----CHHHHH
Confidence 3899999999999999999999998 677776 555443
No 218
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=85.83 E-value=1.2 Score=44.01 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
+++|++++|.|. |.+|.++|+.|.+.|++|+.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 578999999996 8999999999999999977664
No 219
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.81 E-value=2 Score=46.06 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=42.9
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHC----CCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAY----GAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~----GAkVVaVSDs 448 (629)
.++|..||+.. |++.+.+++||+|+|.|- ..||.-+|.+|.+. +|. |+++.+
T Consensus 137 ~PcTp~av~~l----L~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aT-Vtvchs 193 (293)
T PRK14185 137 VSATPNGILEL----LKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCT-VTVCHS 193 (293)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCE-EEEecC
Confidence 46898887654 556688999999999995 67899999999988 688 688776
No 220
>PRK07060 short chain dehydrogenase; Provisional
Probab=85.63 E-value=1.4 Score=43.33 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+++|++++|.|. |.+|.++++.|.+.|++|+.++
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~ 40 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAA 40 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEe
Confidence 4678999999997 8999999999999999966553
No 221
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=85.62 E-value=5.1 Score=41.85 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=52.0
Q ss_pred cEEEEec-CccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCC-CC
Q 006848 417 LRCVVSG-SGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (629)
Q Consensus 417 krVaIQG-fGNVG~~aA~~L~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~-~e 493 (629)
.+|+|.| +|..|+.+++.+.+ .+.++|++.|+...- ..|-|..++ . + ... .+....++ ++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~--~~~~~~~~~---~------~-~~~-----~gv~~~~d~~~ 64 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSS--LQGTDAGEL---A------G-IGK-----VGVPVTDDLEA 64 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--ccCCCHHHh---c------C-cCc-----CCceeeCCHHH
Confidence 4899999 69999999998886 689999999952210 013333221 0 0 000 01222222 22
Q ss_pred cccccccEEeecCCCCccChhhHHHHHHcc
Q 006848 494 PWNERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 494 i~~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
+ ..++||+|-|+.. ....+.+...+..|
T Consensus 65 l-~~~~DvVIdfT~p-~~~~~~~~~al~~g 92 (266)
T TIGR00036 65 V-ETDPDVLIDFTTP-EGVLNHLKFALEHG 92 (266)
T ss_pred h-cCCCCEEEECCCh-HHHHHHHHHHHHCC
Confidence 3 4568999999843 33444555555555
No 222
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=85.59 E-value=6.9 Score=41.70 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 396 G~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
|+|++..+++.. .+.+.+|++|+|.|.|-.++.++..|.+.|++=|.|..+
T Consensus 108 ~~G~~~~L~~~~--~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 108 GIGFLRALKEFG--LPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred HHHHHHHHHhcC--CCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 566655544321 125678999999999999999999999999754677776
No 223
>PRK12828 short chain dehydrogenase; Provisional
Probab=85.55 E-value=1.4 Score=42.98 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=29.9
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|++++|.|. |.+|+++++.|.+.|++|+.+ ++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~-~r 39 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALI-GR 39 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEE-eC
Confidence 578999999985 999999999999999996544 44
No 224
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.55 E-value=1.1 Score=50.01 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=32.1
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-+.+++|.|.|+|.-|..+|++|.+.|++ |.++|.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~-V~~~D~ 45 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAK-VTAFDK 45 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCE-EEEECC
Confidence 45689999999999999999999999998 788996
No 225
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=85.54 E-value=1.9 Score=49.21 Aligned_cols=110 Identities=10% Similarity=0.022 Sum_probs=61.2
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCCCccc
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei~~ 496 (629)
.+|.+.|+|+.|..+|+.|.+.|.+ |+|-|. + .++...+.+.....|. ..+ -. .-+.+++.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NR-----t-----~~k~~~l~~~~~~~Ga-~~~----~~--a~s~~e~v~ 68 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFP-ISVYNR-----T-----TSKVDETVERAKKEGN-LPL----YG--FKDPEDFVL 68 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCe-EEEECC-----C-----HHHHHHHHHhhhhcCC-ccc----cc--CCCHHHHHh
Confidence 3699999999999999999999998 667776 2 2332222221110010 000 00 001122222
Q ss_pred c--cccEEeecCCCCccChhhHHH---------HHHccCCC-C-CCHHHHHHHHHcCCeee
Q 006848 497 E--RCDVAFPCASQNEIDQSDAIN---------LVNSGSNM-P-CTPEAVDVLKKANVLIA 544 (629)
Q Consensus 497 ~--~cDIliPcA~~n~It~enA~~---------lI~eGAN~-P-~TpeA~~iL~erGIl~i 544 (629)
. .||++|-|-.......+-... +|+.+.|. | .|.+..+.++++||.|+
T Consensus 69 ~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 69 SIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1 488888876544322221111 33333443 4 55666788999999987
No 226
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=85.50 E-value=0.69 Score=50.43 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=32.7
Q ss_pred cCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006848 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 410 ~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaV 445 (629)
+|.+|.|||++|.|+|.+|+.+|..+.-.|.++|+-
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~ 175 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGY 175 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEee
Confidence 467999999999999999999999999999997754
No 227
>PLN00203 glutamyl-tRNA reductase
Probab=85.37 E-value=1.8 Score=49.74 Aligned_cols=51 Identities=20% Similarity=0.344 Sum_probs=39.3
Q ss_pred HHHHH-HHHHHHHcCC-CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 398 GLVFF-AQLILADMNK-ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 398 GV~~~-~~~~l~~~g~-~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|.++ ++.+.+.++. ++.+++|.|.|.|.+|..+++.|...|++-|.|.+.
T Consensus 246 Sv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR 298 (519)
T PLN00203 246 SVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR 298 (519)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 34443 4444445553 699999999999999999999999999865777776
No 228
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=85.32 E-value=9.3 Score=43.40 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=35.3
Q ss_pred HHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 407 l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++...-|.||||++.|=..-..+++++|.+.|++||.++..
T Consensus 305 l~d~~~~L~GKrvai~Gdp~~~i~LarfL~elGmevV~vgt~ 346 (457)
T CHL00073 305 LKDYLDLVRGKSVFFMGDNLLEISLARFLIRCGMIVYEIGIP 346 (457)
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeC
Confidence 333344679999999998789999999999999999999665
No 229
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=85.12 E-value=1.4 Score=43.92 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=30.5
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++|+|.|. |.+|..+|+.|.+.|++|+ +.++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEeC
Confidence 588999999985 9999999999999999965 4555
No 230
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=85.11 E-value=1.3 Score=50.50 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=27.8
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|..|...|..|...|.. |.+-|.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~ 36 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDI 36 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCe-EEEEeC
Confidence 5799999999999999999999998 456676
No 231
>PRK06841 short chain dehydrogenase; Provisional
Probab=84.95 E-value=1.5 Score=43.53 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+++|++|+|.| .|.+|+++|+.|.+.|++|+.++
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~ 46 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLD 46 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 368899999998 59999999999999999966543
No 232
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.44 E-value=1.3 Score=49.84 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=32.4
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~ 449 (629)
++.+++|.|.|+|..|..+|++|.+.|++ |.++|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~-v~~~D~~ 39 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGAR-LRVADTR 39 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCE-EEEEcCC
Confidence 46789999999999999999999999999 6789973
No 233
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.33 E-value=1.3 Score=49.11 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=32.2
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|++|.|.|+|.-|..+|++|.+.|++ |.+||.
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~-v~~~D~ 40 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAE-VIAWDD 40 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCE-EEEECC
Confidence 36789999999999999999999999998 788996
No 234
>PLN02240 UDP-glucose 4-epimerase
Probab=84.32 E-value=1.6 Score=45.80 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSD 447 (629)
++++++|+|.|. |.||+++++.|.+.|.+|++++.
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 678999999985 99999999999999999877753
No 235
>PRK08328 hypothetical protein; Provisional
Probab=84.14 E-value=1.2 Score=45.42 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=31.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|++++|+|.|.|-+|..+|+.|...|..=+.+.|.
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457889999999999999999999999866777774
No 236
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.08 E-value=1.2 Score=45.74 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=31.0
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|+.++|+|.|.|.||+++|+.|.+.|..=+++.|.
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~ 43 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF 43 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 357889999999999999999999999755677764
No 237
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.06 E-value=1.9 Score=45.04 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=27.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|.+|..+|..|.+.|.. |.+-|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~-V~l~d~ 34 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFD-VTIYDI 34 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCe-EEEEeC
Confidence 5899999999999999999999998 555565
No 238
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=84.02 E-value=2.3 Score=48.13 Aligned_cols=105 Identities=14% Similarity=0.040 Sum_probs=59.5
Q ss_pred EEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcC-cccccccccCCeeEeCCCCccc-
Q 006848 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR-SLRDYSKTYARSKYYDEAKPWN- 496 (629)
Q Consensus 419 VaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g-~l~~~~~~~p~a~~i~~~ei~~- 496 (629)
|.|.|+|+.|..+|+.|.+.|.+ |.|-|. + .++...+.+.. ..+ .+.. +. +..++..
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~-V~v~dr-----t-----~~~~~~l~~~~-~~g~~~~~-------~~--s~~e~v~~ 60 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFT-VSVYNR-----T-----PEKTDEFLAEH-AKGKKIVG-------AY--SIEEFVQS 60 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCe-EEEEeC-----C-----HHHHHHHHhhc-cCCCCcee-------cC--CHHHHHhh
Confidence 78999999999999999999998 556565 2 23332222100 001 0110 00 1122221
Q ss_pred -ccccEEeecCCCCccChhhHHH---------HHHccCCC-C-CCHHHHHHHHHcCCeee
Q 006848 497 -ERCDVAFPCASQNEIDQSDAIN---------LVNSGSNM-P-CTPEAVDVLKKANVLIA 544 (629)
Q Consensus 497 -~~cDIliPcA~~n~It~enA~~---------lI~eGAN~-P-~TpeA~~iL~erGIl~i 544 (629)
.+||+++-|...+....+-... +|+.+.|. | .|.+..+.|.++||.|+
T Consensus 61 l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fv 120 (467)
T TIGR00873 61 LERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFV 120 (467)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEE
Confidence 2589888886654333322221 34445553 3 45555678899999987
No 239
>PLN02712 arogenate dehydrogenase
Probab=83.96 E-value=1.6 Score=51.45 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=32.8
Q ss_pred cCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 410 ~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.++++++|+|+|+|++|+.+|+.|.+.|.+|+++ |.
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~-dr 400 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAY-SR 400 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEE-EC
Confidence 456789999999999999999999999999986644 44
No 240
>PRK06125 short chain dehydrogenase; Provisional
Probab=83.90 E-value=1.9 Score=43.23 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=30.6
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
..++|++++|.|. |.+|..+|+.|.+.|++|+.+ ++
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~-~r 39 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLV-AR 39 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 4578999999997 789999999999999986554 44
No 241
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=83.82 E-value=1.5 Score=45.85 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=30.9
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
..|.+|+|.|.|.||..+++++...|+++|.++|.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 36789999999999999999999999997777775
No 242
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.77 E-value=1.3 Score=45.57 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=31.9
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|++++|+|.|.|-+|..+|+.|...|..=+.+.|.
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 56 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDF 56 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 467899999999999999999999999766777775
No 243
>PRK06138 short chain dehydrogenase; Provisional
Probab=83.74 E-value=1.8 Score=42.78 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=29.8
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
+++|++++|.|. |-+|+++|+.|.+.|++|+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 578999999985 9999999999999999976554
No 244
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=83.69 E-value=2.5 Score=44.81 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=29.4
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVS 446 (629)
..|.+|+|.|.|.||..+++++...|++|++++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 478999999999999999999999999976654
No 245
>PLN02688 pyrroline-5-carboxylate reductase
Probab=83.68 E-value=3.5 Score=42.18 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.3
Q ss_pred cEEEEecCccHHHHHHHHHHHCCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGA 440 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GA 440 (629)
++|.|.|+|++|..+++.|.+.|.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC
Confidence 479999999999999999999986
No 246
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.57 E-value=5.7 Score=42.86 Aligned_cols=34 Identities=32% Similarity=0.355 Sum_probs=30.1
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.+|+|.|.|.+|.-++..+.-.|+..|.++|.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~ 201 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDR 201 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 3339999999999999999999999988888887
No 247
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.55 E-value=1.5 Score=45.54 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=27.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|.+|..+|..|...|..| .+.|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V-~~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDV-VMVDI 34 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCce-EEEeC
Confidence 47999999999999999999999985 45576
No 248
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=83.51 E-value=2.2 Score=41.71 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=31.2
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++++++|.|. |.+|+++++.|.+.|++|+.++..
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 567899999985 999999999999999998776654
No 249
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=83.50 E-value=1.5 Score=44.04 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=32.9
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~ 449 (629)
.|+.++|+|.|.|-+|+.+|+.|.+.|..=+.+.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4688999999999999999999999998657888864
No 250
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=83.48 E-value=6.7 Score=42.92 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=58.3
Q ss_pred cEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCccc--ccc--cc---cCC---
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLR--DYS--KT---YAR--- 485 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~--~~~--~~---~p~--- 485 (629)
.||+|=|||-+|+.+.+.+.+. +..||+|-|. ..|.+.+..|.++-...|++. ... .. ..+
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~--------~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~ 74 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDA--------SVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQK 74 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCC--------CCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeE
Confidence 5899999999999999987764 5899999874 235555555555444445442 110 00 011
Q ss_pred eeEe---CCCC-cc-cccccEEeecCCCCccChhhHHHHHHcc
Q 006848 486 SKYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 486 a~~i---~~~e-i~-~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
.... ++++ .| +..+|+++.|+.. ..+.+.+...+..|
T Consensus 75 i~~~~~~dp~~~~w~~~gvDiVie~TG~-f~~~~~a~~hl~~G 116 (342)
T PTZ00353 75 IRVSAKHDLVEIAWRDYGVQYVVECTGL-YSTRSRCWGHVTGG 116 (342)
T ss_pred EEEEecCCcccCcccccCCCEEEEcccc-cccHhhhhhhhhcC
Confidence 1111 1222 36 4699999999853 33444455444444
No 251
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=83.47 E-value=1.6 Score=45.09 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=32.1
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|+.++|+|.|.|.+|..+|+.|...|..=++|.|.
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 64 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF 64 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 467899999999999999999999999766788875
No 252
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.42 E-value=2.1 Score=42.21 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=30.2
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++++|.|. |.+|+.+|+.|.+.|++|+. .|+
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~-~~r 37 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLAL-IDL 37 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 478999999997 99999999999999999654 454
No 253
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=83.40 E-value=1.5 Score=43.53 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=24.5
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|-||.-+|-.|++.|.+|+++ |.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~-D~ 31 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGV-DI 31 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE--S
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEE-eC
Confidence 58999999999999999999999997655 54
No 254
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.26 E-value=2.1 Score=42.05 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=29.1
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaV 445 (629)
+++|++|.|.|. |.+|+++++.|.+.|++|+.+
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~ 35 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCIN 35 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 468899999986 889999999999999997655
No 255
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=83.22 E-value=2 Score=42.77 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=30.3
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|++++|.|. |.+|+++++.|.+.|++|+.+ +.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~-~r 39 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIA-DL 39 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE-eC
Confidence 467999999987 999999999999999997654 44
No 256
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.14 E-value=1.6 Score=48.93 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=32.5
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
..+.+++|.|.|+|..|..+|+.|.+.|++ |.++|.
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~-V~~~D~ 46 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCD-VVVADD 46 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCE-EEEECC
Confidence 356789999999999999999999999996 788986
No 257
>PRK07774 short chain dehydrogenase; Provisional
Probab=83.08 E-value=2.1 Score=42.33 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=30.1
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|++++|.|. |-+|.++++.|.+.|++|+.+ |+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~-~r 38 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVA-DI 38 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 468899999986 999999999999999997655 44
No 258
>PRK06523 short chain dehydrogenase; Provisional
Probab=83.00 E-value=2 Score=42.88 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=30.5
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+++|++++|.|. |.+|+++|+.|.+.|++|+.++
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 40 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTA 40 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEe
Confidence 4688999999995 8999999999999999976553
No 259
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=82.84 E-value=2.2 Score=43.02 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=32.0
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++||+++|.|. +.+|.++|+.|.+.|++|+.++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4689999999986 889999999999999997766554
No 260
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.82 E-value=2.2 Score=42.04 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=30.0
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++++++|.|. |.+|.++++.|.+.|++|+ +.++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~-~~~r 37 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVV-VTDR 37 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEE-EEeC
Confidence 578899999985 9999999999999999954 4455
No 261
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.73 E-value=1.9 Score=47.63 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=31.4
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++.+++|.|.|.|..|..+|++|.+.|++ |.++|.
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~-v~~~d~ 36 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAE-VAAYDA 36 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 36789999999999999999999999999 567786
No 262
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=82.69 E-value=2.2 Score=42.15 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=30.3
Q ss_pred CCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++++++|.|. |.+|+++|+.|.+.|++||.+.+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~ 36 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGP 36 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence 46899999985 999999999999999998776654
No 263
>PRK12742 oxidoreductase; Provisional
Probab=82.54 E-value=2.4 Score=41.61 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=29.7
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
.++|++|+|.|. |.+|+.+|+.|.+.|++|+.+.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~ 37 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTY 37 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEec
Confidence 478999999995 9999999999999999976553
No 264
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.39 E-value=2.5 Score=41.77 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
.+++++++|.| .|.+|+++|+.|.+.|++|+.+.+
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 46789999998 699999999999999999876544
No 265
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=82.38 E-value=1.9 Score=47.04 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=31.2
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|++|+|.|+|-+|..+++++..+||+|++++-+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~ 199 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS 199 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5899999999999999999999999999888765
No 266
>PRK09072 short chain dehydrogenase; Provisional
Probab=82.38 E-value=2.3 Score=42.73 Aligned_cols=34 Identities=38% Similarity=0.488 Sum_probs=29.4
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVS 446 (629)
++++++++|.| .|-+|..+++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 56889999998 59999999999999999966554
No 267
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=82.35 E-value=1.4 Score=44.09 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=32.3
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|+.++|.|.|.|.+|..+|+.|...|..-+++.|.
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~ 53 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDD 53 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 467889999999999999999999999877888875
No 268
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=82.32 E-value=3.6 Score=44.11 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-.|.+|+|.|.|.||..+++.+...|++|++++++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~ 216 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36899999999999999999999999998776554
No 269
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.18 E-value=1.9 Score=48.63 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=30.9
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+.|++|+|.|+|..|..++++|...|++ |.++|.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~-v~~~D~ 43 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGAR-PTVCDD 43 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCE-EEEEcC
Confidence 4789999999999999999999999999 566886
No 270
>PRK08703 short chain dehydrogenase; Provisional
Probab=82.13 E-value=2.5 Score=41.83 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++++|.|. |.+|.++|+.|.+.|++|+.+ ++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~-~r 38 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILV-AR 38 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE-eC
Confidence 578999999985 999999999999999996554 44
No 271
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.06 E-value=1.7 Score=44.01 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=32.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~ 449 (629)
.|+.++|+|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4788999999999999999999999998667788763
No 272
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.03 E-value=2.3 Score=42.03 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=28.4
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006848 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 414 L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaV 445 (629)
+++++|+|.| .|.+|.++|+.|.+.|++|+.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~ 34 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIA 34 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 5788999998 6999999999999999997655
No 273
>PRK10637 cysG siroheme synthase; Provisional
Probab=81.97 E-value=1.7 Score=48.72 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=32.4
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
.+|+|++|+|.|.|+||..=++.|.+.||+|+-||-
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp 43 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNAL 43 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 378999999999999999999999999999876664
No 274
>PRK04148 hypothetical protein; Provisional
Probab=81.93 E-value=2.5 Score=40.38 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=28.3
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++++|++.|.| -|..+|+.|.+.|..|+ ..|.
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~Vi-aIDi 47 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVI-VIDI 47 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEE-EEEC
Confidence 467899999999 88889999999999954 5576
No 275
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=81.89 E-value=1.6 Score=43.60 Aligned_cols=36 Identities=17% Similarity=0.468 Sum_probs=32.1
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|+..+|.|.|.|.+|..+|+.|...|.+=+++.|.
T Consensus 16 ~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~ 51 (198)
T cd01485 16 KLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDH 51 (198)
T ss_pred HHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 357789999999999999999999999877888875
No 276
>PRK06949 short chain dehydrogenase; Provisional
Probab=81.74 E-value=2.4 Score=42.09 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=30.3
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+++|++++|.|. |.+|+++|+.|.+.|++|+.++
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~ 40 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLAS 40 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 4688999999985 9999999999999999966553
No 277
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=81.54 E-value=1.8 Score=46.97 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=32.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~ 449 (629)
.|+.++|+|.|.|.+|..+|+.|.+.|..=|.+.|.+
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678999999999999999999999998557888863
No 278
>PRK09186 flagellin modification protein A; Provisional
Probab=81.33 E-value=2.4 Score=42.06 Aligned_cols=32 Identities=25% Similarity=0.550 Sum_probs=28.6
Q ss_pred CCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006848 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaV 445 (629)
++|++|+|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 57899999995 899999999999999997665
No 279
>PRK07340 ornithine cyclodeaminase; Validated
Probab=81.32 E-value=3.7 Score=43.73 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=63.5
Q ss_pred CCCcEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ 492 (629)
...+++.|.|.|..|+..++.|.. .+.+-|.|.|. ++ ++...+.+.... . . .....-+.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r-----~~-----~~a~~~a~~~~~---~-~-----~~~~~~~~~ 183 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR-----TA-----ASAAAFCAHARA---L-G-----PTAEPLDGE 183 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC-----CH-----HHHHHHHHHHHh---c-C-----CeeEECCHH
Confidence 467899999999999999998875 67676888877 32 332222221111 0 0 111111112
Q ss_pred CcccccccEEeecCCC--CccChhhHHH---HHHccCCCCCCHHHHHHHHHcCCeeech
Q 006848 493 KPWNERCDVAFPCASQ--NEIDQSDAIN---LVNSGSNMPCTPEAVDVLKKANVLIAPA 546 (629)
Q Consensus 493 ei~~~~cDIliPcA~~--n~It~enA~~---lI~eGAN~P~TpeA~~iL~erGIl~iPD 546 (629)
+.. .++||++=|+.. ..++.. .+. ++.=|++.|-..|.+.-+..+--+|+-|
T Consensus 184 ~av-~~aDiVitaT~s~~Pl~~~~-~~~g~hi~~iGs~~p~~~El~~~~~~~a~v~vD~ 240 (304)
T PRK07340 184 AIP-EAVDLVVTATTSRTPVYPEA-ARAGRLVVAVGAFTPDMAELAPRTVRGSRLYVDD 240 (304)
T ss_pred HHh-hcCCEEEEccCCCCceeCcc-CCCCCEEEecCCCCCCcccCCHHHHhhCeEEEcC
Confidence 223 389999998764 445442 211 4445688887666654343343334433
No 280
>PRK08618 ornithine cyclodeaminase; Validated
Probab=81.21 E-value=8.6 Score=41.20 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=28.7
Q ss_pred CCcEEEEecCccHHHHHHHHHH-HCCCEEEEEeCC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDA 448 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~-e~GAkVVaVSDs 448 (629)
..++++|.|.|..|++.++.+. ..+.+-|.|.|.
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r 160 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence 5689999999999998887765 468888999887
No 281
>PRK06153 hypothetical protein; Provisional
Probab=81.15 E-value=1.2 Score=49.53 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=31.8
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|++++|+|.|+|-+|+++++.|++.|..=+.+.|.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 467899999999999999999999999765777775
No 282
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=81.09 E-value=2.7 Score=44.59 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=32.6
Q ss_pred CCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006848 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 411 g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
+.+..++||+|.| .|-+|+++++.|.+.|.+|+++++
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4577899999999 599999999999999999887755
No 283
>PRK08264 short chain dehydrogenase; Validated
Probab=81.08 E-value=2.6 Score=41.48 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=28.8
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCC-EEEEEe
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGA-IPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GA-kVVaVS 446 (629)
++.+++++|.| .|.+|+++|+.|.+.|+ +|+.++
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 46789999998 59999999999999999 754443
No 284
>PRK06172 short chain dehydrogenase; Provisional
Probab=81.05 E-value=2.8 Score=41.71 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=30.6
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++|++++|.|. |.+|.++|+.|.+.|++|+.+ ++
T Consensus 3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~-~r 39 (253)
T PRK06172 3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVA-DR 39 (253)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 3578999999985 899999999999999996555 55
No 285
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.01 E-value=2.7 Score=41.26 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=29.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++++|.| .|.+|+++|+.|.+.|++|+.+ +.
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~-~r 37 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGV-DK 37 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 57899999998 5899999999999999996554 44
No 286
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=80.94 E-value=6.8 Score=44.93 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.4
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-+++|.|+|++|+.+|+.|.+.|..++ +-|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~ 448 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIET 448 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEEC
Confidence 468999999999999999999999854 4454
No 287
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.89 E-value=6.8 Score=43.76 Aligned_cols=134 Identities=22% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCCcCCCCCCCCHHHHHHHHHHhhhhhcCCCccccCCccccCCCCCCCCcchHHHHH-----------
Q 006848 333 SFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVF----------- 401 (629)
Q Consensus 333 ~f~~eL~r~IGp~~DVpApDvGt~~rem~~m~d~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~----------- 401 (629)
+|+.||..+ +.=+|.+.+++..=.+.=+|+..++-..-.| +|||--+-.-.+.=-.+
T Consensus 218 sFiNEia~i--------ce~~g~D~~~V~~gIGlD~RIG~~fl~aG~G----yGGsCfPKD~~AL~~~a~~~~~~~~ll~ 285 (414)
T COG1004 218 SFINEIANI--------CEKVGADVKQVAEGIGLDPRIGNHFLNAGFG----YGGSCFPKDTKALIANAEELGYDPNLLE 285 (414)
T ss_pred HHHHHHHHH--------HHHhCCCHHHHHHHcCCCchhhHhhCCCCCC----CCCcCCcHhHHHHHHHHHhcCCchHHHH
Q ss_pred ------------HHHHHHHHcCCCCCCcEEEEecC----------ccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCC
Q 006848 402 ------------FAQLILADMNKELKGLRCVVSGS----------GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFD 459 (629)
Q Consensus 402 ------------~~~~~l~~~g~~L~GkrVaIQGf----------GNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD 459 (629)
.++.++++++ |+||+|+|-|+ -.....+++.|.+.||+|+ +|||....
T Consensus 286 avv~vN~~qk~~~~~~i~~~~~--l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~--------aYDP~a~~ 355 (414)
T COG1004 286 AVVEVNERRKDKLAEKILNHLG--LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVI--------AYDPVAME 355 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEE--------EECchhhH
Q ss_pred HHHHhHHHHHHhhcCcccccccccCCeeEeCCCCcccccccEEeecC
Q 006848 460 YMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCA 506 (629)
Q Consensus 460 ~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei~~~~cDIliPcA 506 (629)
-... .+|+..+.+..+-.-..||+++-+.
T Consensus 356 ~~~~------------------~~~~~~~~~~~~~~~~~aDaivi~t 384 (414)
T COG1004 356 NAFR------------------NFPDVELESDAEEALKGADAIVINT 384 (414)
T ss_pred HHHh------------------cCCCceEeCCHHHHHhhCCEEEEec
No 288
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=80.79 E-value=2.4 Score=44.89 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=29.4
Q ss_pred CCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
++|++|+|.|. |-+|+++++.|.+.|.+|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 46899999995 9999999999999999987764
No 289
>PRK06057 short chain dehydrogenase; Provisional
Probab=80.75 E-value=2.7 Score=42.11 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=29.5
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaV 445 (629)
.++|++|+|.|. |.+|.++++.|.+.|++|+.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 478999999997 999999999999999996554
No 290
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=80.65 E-value=17 Score=35.36 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCc-EEEEecCccHH---HHHHHHHHHCCCEEEE
Q 006848 394 ATGYGLVFFAQLILADMNKELKGL-RCVVSGSGKIA---MHVLEKLIAYGAIPVS 444 (629)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~L~Gk-rVaIQGfGNVG---~~aA~~L~e~GAkVVa 444 (629)
..|++++..++..+. ..+.+ -+++.|.||=| ..+|+.|.+.|.+|..
T Consensus 7 ~Ag~~~a~~i~~~~~----~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 7 NAGRAIAELIRKLFG----SPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHHHHHST----CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhc----ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 457777766655543 33444 45678998865 6899999999999544
No 291
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.61 E-value=3.3 Score=41.04 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=30.5
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSD 447 (629)
+++|++++|.|. |.+|+++++.|.+.|++|+.++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 478899999995 99999999999999999776653
No 292
>PRK05875 short chain dehydrogenase; Provisional
Probab=80.48 E-value=2.9 Score=42.22 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=29.9
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
++++++++|.|. |.+|.++|+.|.+.|++|+.++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 578999999996 8999999999999999976554
No 293
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=80.46 E-value=2.7 Score=42.20 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaV 445 (629)
+++|++++|.|. |.+|.++|+.|.+.|++|+.+
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 688999999985 789999999999999998766
No 294
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=80.45 E-value=5 Score=44.61 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=30.7
Q ss_pred CCCCCcEEEEecC-----------------ccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGS-----------------GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGf-----------------GNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+++|++|+|.|- |..|..+|+.|.+.||+|+.++
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 5789999999986 8899999999999999966554
No 295
>PRK08339 short chain dehydrogenase; Provisional
Probab=80.37 E-value=3 Score=42.40 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++||+++|.|. |.+|..+|+.|.+.|++|+ +.|.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~-~~~r 40 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVI-LLSR 40 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEeC
Confidence 4689999999986 7899999999999999955 4555
No 296
>PRK07576 short chain dehydrogenase; Provisional
Probab=80.37 E-value=2.9 Score=42.44 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=30.6
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++++++|.|. |.+|.++|+.|.+.|++|+.+ |.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~-~r 41 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVA-SR 41 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 578999999986 899999999999999996665 44
No 297
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=80.31 E-value=4.2 Score=42.31 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.9
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|.|.|+|++|..+|+.|.+.|.+| .+.|.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v-~~~d~ 33 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSL-VVYDR 33 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeE-EEEcC
Confidence 57999999999999999999999985 45555
No 298
>PRK12939 short chain dehydrogenase; Provisional
Probab=80.28 E-value=3 Score=41.07 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaV 445 (629)
++++++++|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 578899999985 999999999999999997766
No 299
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.26 E-value=1.4 Score=45.10 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=25.5
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEE--EEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIP--VSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkV--VaVSDs 448 (629)
++|.|.|+|++|+.+++.|.+.|..+ +.|+|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r 34 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR 34 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence 37999999999999999999888532 455554
No 300
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=80.25 E-value=2.1 Score=48.30 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=32.0
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++.+++|+|.|+|.-|..+|+.|.+.|++ |.|+|.
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~-v~v~D~ 38 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLGAE-VTVSDD 38 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCCCe-EEEEcC
Confidence 44589999999999999999999999999 788886
No 301
>PRK06197 short chain dehydrogenase; Provisional
Probab=80.17 E-value=3 Score=43.27 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=31.4
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSD 447 (629)
.+++|++|+|.|. |-+|.++|+.|.+.|++|+.++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 3678999999985 99999999999999999776654
No 302
>PRK05867 short chain dehydrogenase; Provisional
Probab=80.14 E-value=2.8 Score=41.87 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=30.0
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++++|.|. |.+|.++|+.|.+.|++|+. .+.
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~-~~r 41 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAI-AAR 41 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EcC
Confidence 578999999996 88999999999999999654 444
No 303
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=80.13 E-value=2.7 Score=41.81 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=29.7
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-+++++|+|.| .|.+|.++++.|.+.|++|+.+ |+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~-~r 44 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILL-GR 44 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEE-eC
Confidence 46899999997 5899999999999999997654 44
No 304
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=80.07 E-value=3.5 Score=41.42 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=31.5
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++|++++|.| .|.+|.++|+.|.+.|++||.++.+
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~ 40 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRS 40 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 468999999998 4889999999999999997766543
No 305
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=80.07 E-value=2.3 Score=47.38 Aligned_cols=34 Identities=35% Similarity=0.323 Sum_probs=31.1
Q ss_pred CCCcEEEEecCccHHHH-HHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMH-VLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~-aA~~L~e~GAkVVaVSDs 448 (629)
.++++|.|.|.|..|.. +|++|.+.|++ |.++|.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~ 39 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDL 39 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECC
Confidence 46789999999999999 79999999999 688997
No 306
>PRK12829 short chain dehydrogenase; Provisional
Probab=80.00 E-value=3 Score=41.55 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=29.2
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
.++++++.|.|. |.+|+++|+.|.+.|++|+.+.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 478899999985 9999999999999999965443
No 307
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.99 E-value=2.8 Score=41.98 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=29.0
Q ss_pred CCCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaV 445 (629)
+++|++|.|.|.+ .+|.++|+.|.+.|++|+.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~ 37 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFT 37 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 5789999999974 69999999999999997655
No 308
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=79.73 E-value=3.2 Score=41.81 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=29.6
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++++++|.|. |.+|+++|+.|.+.|++|+.+ |.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~-~r 37 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVL-DK 37 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 468999999985 789999999999999997654 44
No 309
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.68 E-value=3.1 Score=42.01 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=29.9
Q ss_pred CCCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++||+++|.|.+ .+|..+|+.|.+.|++|+.+ +.
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~-~r 41 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT-YQ 41 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe-cC
Confidence 4789999999985 79999999999999996644 44
No 310
>PRK08223 hypothetical protein; Validated
Probab=79.63 E-value=2.1 Score=45.75 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=32.3
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|+..+|+|.|+|-+|..+|+.|+..|..=+.+.|.
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 467899999999999999999999999866888875
No 311
>PRK06398 aldose dehydrogenase; Validated
Probab=79.55 E-value=3.3 Score=41.88 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=29.9
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
+++|++++|.|. |-+|.++|+.|.+.|++|+.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~ 37 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFD 37 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 578999999985 7899999999999999977554
No 312
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=79.54 E-value=4.6 Score=42.23 Aligned_cols=108 Identities=25% Similarity=0.340 Sum_probs=62.7
Q ss_pred CcEEEEecCccHHH-HHHHHHHHCC--CEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCee-EeCC
Q 006848 416 GLRCVVSGSGKIAM-HVLEKLIAYG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSK-YYDE 491 (629)
Q Consensus 416 GkrVaIQGfGNVG~-~aA~~L~e~G--AkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~-~i~~ 491 (629)
-.||+|.|+|+.+. +.+..+.+.+ ..+|+|.|+ |+ +.+ ....++ |+-.. +-+-
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~-----~~-----~~a---~~~a~~----------~~~~~~~~~~ 59 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR-----DP-----ERA---EAFAEE----------FGIAKAYTDL 59 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC-----CH-----HHH---HHHHHH----------cCCCcccCCH
Confidence 36899999997774 4666777765 599999998 33 222 111221 11111 2233
Q ss_pred CCcccc-cccEEeecCCCCccChhhHHHHHHccCC----CC--CC-HHHH---HHHHHcCCeeechh
Q 006848 492 AKPWNE-RCDVAFPCASQNEIDQSDAINLVNSGSN----MP--CT-PEAV---DVLKKANVLIAPAM 547 (629)
Q Consensus 492 ~ei~~~-~cDIliPcA~~n~It~enA~~lI~eGAN----~P--~T-peA~---~iL~erGIl~iPD~ 547 (629)
++++.. ++|+++=|+ .+..+.+-+.+.+..|-+ -| .| .|+. ++.+++|+.+.-.+
T Consensus 60 ~~ll~~~~iD~V~Iat-p~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~ 125 (342)
T COG0673 60 EELLADPDIDAVYIAT-PNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGF 125 (342)
T ss_pred HHHhcCCCCCEEEEcC-CChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeeh
Confidence 556654 488888766 566777777776666621 13 22 3444 44566676655333
No 313
>PRK07890 short chain dehydrogenase; Provisional
Probab=79.47 E-value=3.1 Score=41.34 Aligned_cols=35 Identities=29% Similarity=0.245 Sum_probs=29.7
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-+++++|+|.|. |.+|+++|+.|.+.|++|+ +.|+
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~-~~~r 37 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAGADVV-LAAR 37 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EEeC
Confidence 367899999985 8999999999999999965 5555
No 314
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=79.44 E-value=2.8 Score=44.04 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=31.3
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSD 447 (629)
++++++|.|.|. |-+|+++++.|.+.|.+|+++..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r 38 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR 38 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence 678999999995 99999999999999999887754
No 315
>PRK07062 short chain dehydrogenase; Provisional
Probab=79.38 E-value=3.4 Score=41.54 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=30.7
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++|++++|.|. |.+|.++|+.|.+.|++|+ +.++
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~-~~~r 40 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVA-ICGR 40 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeC
Confidence 4688999999986 7899999999999999965 4454
No 316
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.38 E-value=8 Score=42.59 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=30.2
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaV 445 (629)
..++|++++|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~ 240 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCL 240 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999996 999999999999999997765
No 317
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=79.29 E-value=3 Score=43.51 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.2
Q ss_pred EecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 421 VSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 421 IQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
|.|+|++|..+|+.|.+.|.+ |.+.|.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~-V~v~dr 27 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHP-VRVFDL 27 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCe-EEEEeC
Confidence 469999999999999999998 456665
No 318
>PRK12937 short chain dehydrogenase; Provisional
Probab=79.28 E-value=3.7 Score=40.39 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=30.7
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++++++|.| .|.+|+++|+.|.+.|++|+.+..+
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 56889999998 5999999999999999997766543
No 319
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=79.15 E-value=3.4 Score=41.97 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHH--HHCCCEEEEEeCC
Q 006848 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKL--IAYGAIPVSVSDA 448 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L--~e~GAkVVaVSDs 448 (629)
-||-|-+-.++..+-+|.+ +-..|+|.|.||.|++++.+- .+.|.+|+++-|.
T Consensus 64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv 118 (211)
T COG2344 64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV 118 (211)
T ss_pred CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecC
Confidence 4677777666666666654 336799999999999998743 3689999999998
No 320
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.14 E-value=2.9 Score=44.39 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEEeC
Q 006848 411 NKELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 411 g~~L~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaVSD 447 (629)
..+++||+++|-|.| -+|+++|+.|++.|++|| |.|
T Consensus 3 ~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vv-v~~ 41 (299)
T PRK06300 3 KIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATIL-VGT 41 (299)
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEE-EEe
Confidence 357899999999997 799999999999999965 455
No 321
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=79.05 E-value=1.9 Score=45.23 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=30.1
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
|+..+|+|.|.|-||+++++.|.+-|..=+++-|-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence 57789999999999999999999999755666664
No 322
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=78.95 E-value=2.8 Score=38.98 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=27.4
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+|+|.|.|.+|..+|+.|...|..=+.+.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcC
Confidence 5899999999999999999999855777775
No 323
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=78.91 E-value=3.4 Score=41.16 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.7
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++|++++|.|. |.+|+.+|+.|.+.|++|+.+ ++
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~-~r 43 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVN-GR 43 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE-eC
Confidence 4689999999985 899999999999999996554 54
No 324
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=78.88 E-value=2.8 Score=43.27 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=26.4
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|++|..+|..|.+.|..| .+.|.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V-~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDV-TLVAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeE-EEEEC
Confidence 47999999999999999999999985 44444
No 325
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=78.81 E-value=3.4 Score=41.52 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=29.2
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaV 445 (629)
++++++++|.| .|.+|.++|+.|.+.|++|+.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNA 39 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 57899999998 5899999999999999996544
No 326
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.77 E-value=1.9 Score=46.45 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=27.7
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|..|...|..+...|.. |.+-|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeC
Confidence 5899999999999999999999999 556665
No 327
>PRK06196 oxidoreductase; Provisional
Probab=78.74 E-value=3.3 Score=43.23 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 411 g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
..+++|++|+|.|. |-+|.++|+.|.+.|++|+.++
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPA 57 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 34678999999986 8899999999999999976654
No 328
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.56 E-value=4.2 Score=40.71 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=30.6
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006848 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 412 ~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
..++|++++|.| .|-+|.++|+.|.+.|++|+.+..
T Consensus 3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~ 39 (255)
T PRK06463 3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYN 39 (255)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 357899999998 599999999999999999776543
No 329
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.43 E-value=3 Score=44.01 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=29.0
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++|.|.|+|++|..+|+.|.+.|..| .+.|+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V-~~~~r 35 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRV-RVWSR 35 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEE-EEEeC
Confidence 4679999999999999999999999985 56665
No 330
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.43 E-value=3.6 Score=41.65 Aligned_cols=36 Identities=31% Similarity=0.266 Sum_probs=30.6
Q ss_pred CCCCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++||+++|.|.+ .+|..+|+.|.+.|++| .+.|.
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v-~l~~r 44 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAEL-AVTYL 44 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEE-EEEeC
Confidence 36789999999975 69999999999999995 55565
No 331
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.32 E-value=3.8 Score=40.49 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=29.6
Q ss_pred CCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+.|++++|.|. |.+|+++|+.|.+.|++|+.+.++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r 37 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYAR 37 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 46789999985 899999999999999997765444
No 332
>PRK07035 short chain dehydrogenase; Provisional
Probab=78.31 E-value=3.6 Score=40.88 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=29.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVS 446 (629)
++++++|+|.| .|.+|.++++.|.+.|++|+.++
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 67899999998 58999999999999999977663
No 333
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=78.30 E-value=4.4 Score=42.29 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=49.8
Q ss_pred cEEEEecCccHHHHHHHHHHHC--CCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCCCc
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~--GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ei 494 (629)
.+|.|.|+|+.|..+++++.+- .++.++|.|. ++ +++ +++-. ++. .-...+-+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~-----~~-----ek~---~~~~~---~~~-------~~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR-----DE-----EKA---KELEA---SVG-------RRCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC-----CH-----HHH---HHHHh---hcC-------CCccccHHHH
Confidence 3689999999999999987753 5899999997 22 232 11111 111 1011112334
Q ss_pred ccccccEEeecCCCCccChhhHHHHHHcc
Q 006848 495 WNERCDVAFPCASQNEIDQSDAINLVNSG 523 (629)
Q Consensus 495 ~~~~cDIliPcA~~n~It~enA~~lI~eG 523 (629)
. .+.|+++.||.++.+-+ -+.+++..|
T Consensus 58 ~-~~~DlvVEaAS~~Av~e-~~~~~L~~g 84 (255)
T COG1712 58 I-AEVDLVVEAASPEAVRE-YVPKILKAG 84 (255)
T ss_pred h-hccceeeeeCCHHHHHH-HhHHHHhcC
Confidence 4 68999999997655433 234455554
No 334
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.20 E-value=3.5 Score=42.34 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++||+++|.|.+ .+|..+|+.|++.|++|+ +.+.
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~-~~~r 41 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELA-FTYQ 41 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEE-EecC
Confidence 4789999999987 699999999999999965 4554
No 335
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.18 E-value=3.7 Score=41.48 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=29.7
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++++|.|. |-+|.++++.|.+.|++|+.+ ++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~-~r 42 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIA-AR 42 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 478999999986 679999999999999997655 44
No 336
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=78.01 E-value=3.2 Score=44.15 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=31.1
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSD 447 (629)
-+++++|.|.|. |-+|+++++.|.+.|.+|+++.-
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 467899999995 99999999999999999887754
No 337
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=77.98 E-value=7.4 Score=41.87 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=29.3
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCC-EEEEEeCC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSDA 448 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GA-kVVaVSDs 448 (629)
+.++|+|.|.|+||..+|..|...|. . |.+-|.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi 38 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI 38 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence 45799999999999999999998885 6 788898
No 338
>PRK08226 short chain dehydrogenase; Provisional
Probab=77.94 E-value=3.7 Score=41.10 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=29.8
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++++++|.| .|.+|+++|+.|.+.|++|+.+ ++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~-~r 38 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILL-DI 38 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe-cC
Confidence 46789999998 6899999999999999997655 44
No 339
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=77.85 E-value=6 Score=37.75 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=26.2
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+|+|.|.||-|..+|..|.+.|.. |.+-+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~-V~l~~~ 30 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHE-VTLWGR 30 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEE-EEEETS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCE-EEEEec
Confidence 589999999999999999999977 566554
No 340
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.84 E-value=4.1 Score=39.97 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=28.9
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+.+++|+|.| .|.+|+++++.|.+.|++|+.+ ++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~-~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT-AR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe-eC
Confidence 5688999998 4999999999999999996655 44
No 341
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=77.83 E-value=3.7 Score=41.00 Aligned_cols=36 Identities=31% Similarity=0.282 Sum_probs=30.4
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
..+++++++|.|. |.+|+++|+.|.+.|++|+. .|.
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~-~~r 40 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGARVVL-VDR 40 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 3578999999986 88999999999999999654 454
No 342
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=77.82 E-value=6 Score=41.78 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=29.4
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
..|.+|+|.|.|.||..+++++...|++.|.++|.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 46899999999999999999999999954445554
No 343
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=77.81 E-value=5.5 Score=45.74 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=31.1
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
...|.+|+|.|.|.+|..++..+..+||+ |.+.|.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~-V~a~D~ 196 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAI-VRAFDT 196 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence 35689999999999999999999999997 677776
No 344
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=77.76 E-value=6.7 Score=40.89 Aligned_cols=29 Identities=14% Similarity=0.373 Sum_probs=24.6
Q ss_pred cEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 417 LRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
+||.|.|. |-+|+++++.|.+.| .|+++.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~ 30 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALD 30 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEec
Confidence 47899986 999999999999999 766554
No 345
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=77.76 E-value=3.8 Score=40.99 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=30.0
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++++|.| .|.+|.++|+.|.+.|++|+. .++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~-~~r 44 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVL-SAR 44 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEE-EeC
Confidence 57899999998 499999999999999999654 454
No 346
>PRK10206 putative oxidoreductase; Provisional
Probab=77.75 E-value=2.9 Score=45.01 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=58.9
Q ss_pred cEEEEecCccHHH-HHHHHH-HH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeC-CC
Q 006848 417 LRCVVSGSGKIAM-HVLEKL-IA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EA 492 (629)
Q Consensus 417 krVaIQGfGNVG~-~aA~~L-~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~-~~ 492 (629)
.||+|+|+|+.+. .-+..+ .. .++.|++|+|+ +++ ..+ ..+ .|++..+++ -+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~-----~~~---~~~------~~~----------~~~~~~~~~~~~ 57 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRR-----HAK---PEE------QAP----------IYSHIHFTSDLD 57 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcC-----Chh---HHH------HHH----------hcCCCcccCCHH
Confidence 4799999999775 223433 33 47899999997 332 111 011 122222222 34
Q ss_pred Cccc-ccccEEeecCCCCccChhhHHHHHHccCC----CCC---CHHHHH---HHHHcCCeee
Q 006848 493 KPWN-ERCDVAFPCASQNEIDQSDAINLVNSGSN----MPC---TPEAVD---VLKKANVLIA 544 (629)
Q Consensus 493 ei~~-~~cDIliPcA~~n~It~enA~~lI~eGAN----~P~---TpeA~~---iL~erGIl~i 544 (629)
++++ .++|+++=|+ .+..+.+-+.+.+..|-+ -|. ..++.+ ..+++|+.+.
T Consensus 58 ell~~~~iD~V~I~t-p~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 58 EVLNDPDVKLVVVCT-HADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred HHhcCCCCCEEEEeC-CchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 5563 5789888866 566777777777766622 232 244444 3466676654
No 347
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.74 E-value=3.6 Score=41.78 Aligned_cols=35 Identities=34% Similarity=0.327 Sum_probs=30.0
Q ss_pred CCCCcEEEEecC---ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf---GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++||+++|.|. +.+|..+|+.|.+.|++|+ +.+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~-~~~r 41 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLV-FTYA 41 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EecC
Confidence 578999999997 4899999999999999965 4444
No 348
>PRK05876 short chain dehydrogenase; Provisional
Probab=77.71 E-value=3.8 Score=42.11 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.2
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++++|.| .|.+|+++|+.|.+.|++| .++|.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~V-v~~~r 38 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARV-VLGDV 38 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEE-EEEeC
Confidence 47899999998 6899999999999999995 45565
No 349
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=77.71 E-value=4.1 Score=39.70 Aligned_cols=35 Identities=34% Similarity=0.439 Sum_probs=29.3
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++.+++|+|.| .|.+|.++++.|.+.|++|+ +.+.
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~-~~~r 37 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVV-IYDS 37 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence 46778999998 49999999999999999964 4444
No 350
>PRK12746 short chain dehydrogenase; Provisional
Probab=77.68 E-value=4.3 Score=40.32 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
++++++++|.| .|-+|.++|+.|.+.|++|+.+..
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~ 38 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYG 38 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 47789999998 599999999999999999655433
No 351
>PLN02256 arogenate dehydrogenase
Probab=77.57 E-value=4.1 Score=43.50 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=29.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
.-++++|+|.|+|++|+.+|+.|.+.|.+|+++..
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~ 67 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSR 67 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEEC
Confidence 34778999999999999999999999988765543
No 352
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=77.55 E-value=4.3 Score=42.80 Aligned_cols=112 Identities=17% Similarity=0.287 Sum_probs=66.1
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhc----CcccccccccCCeeEeCCCC
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ----RSLRDYSKTYARSKYYDEAK 493 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~----g~l~~~~~~~p~a~~i~~~e 493 (629)
++-++|+|..|.++++.|...|..||+- |. |+ ++. .+++... .++.+++..++ ++..
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~y-D~-----n~-----~av---~~~~~~ga~~a~sl~el~~~L~-----~pr~ 62 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVVGY-DV-----NQ-----TAV---EELKDEGATGAASLDELVAKLS-----APRI 62 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEEEE-cC-----CH-----HHH---HHHHhcCCccccCHHHHHHhcC-----CCcE
Confidence 5668999999999999999999997643 43 33 222 2233221 13333332221 2233
Q ss_pred cccccccEEeecC-CCCccChhhHHH-----HHHccCCCC--CCHHHHHHHHHcCCeeechhhcccccce
Q 006848 494 PWNERCDVAFPCA-SQNEIDQSDAIN-----LVNSGSNMP--CTPEAVDVLKKANVLIAPAMAAGAGGVV 555 (629)
Q Consensus 494 i~~~~cDIliPcA-~~n~It~enA~~-----lI~eGAN~P--~TpeA~~iL~erGIl~iPD~~aNAGGVi 555 (629)
+| +.+|++ +.+.+=.+-+.. +|+.|-|.- -+..-.+.|+++||.|+ =+-.+||+.
T Consensus 63 vW-----lMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~fl--D~GTSGG~~ 125 (300)
T COG1023 63 VW-----LMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL--DVGTSGGVW 125 (300)
T ss_pred EE-----EEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEE--eccCCCCch
Confidence 44 467876 333222223332 455665544 34445568999999998 567788875
No 353
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=77.54 E-value=3.9 Score=43.37 Aligned_cols=33 Identities=21% Similarity=0.081 Sum_probs=26.4
Q ss_pred CCcEEEEecCccHHHHHHHHHHH-CC-CEEEEEeCC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIA-YG-AIPVSVSDA 448 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e-~G-AkVVaVSDs 448 (629)
.|.+|+|.|.|.||..+++.+.. .| ++|+ ++|.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi-~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLV-VFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEE-EEeC
Confidence 58999999999999999998876 55 4654 4454
No 354
>PRK07063 short chain dehydrogenase; Provisional
Probab=77.52 E-value=3.9 Score=40.94 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=29.8
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|++++|.|. |-+|.++|+.|.+.|++|+. .|.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~-~~r 39 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVAL-ADL 39 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 478999999985 88999999999999999654 454
No 355
>PRK05872 short chain dehydrogenase; Provisional
Probab=77.47 E-value=3.9 Score=42.42 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=30.5
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++|++++|.|. |.+|..+|+.|.+.|++|+. .+.
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r 41 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLAL-VDL 41 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 4688999999985 88999999999999999654 444
No 356
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=77.45 E-value=4.3 Score=42.26 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=30.8
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
..|++|.|.| .|-+|+++++.|.+.|.+|+++++.
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4689999998 5999999999999999998877664
No 357
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.41 E-value=4.2 Score=40.58 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=29.9
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++++++|.|. |.+|.++|+.|.+.|++|+.+ +.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~-~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVG-AR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 578999999985 899999999999999996555 44
No 358
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=77.38 E-value=3.9 Score=48.64 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=28.2
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|..|..+|..++..|.. |.+-|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~ 344 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDI 344 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCe-EEEEeC
Confidence 5899999999999999999999998 677777
No 359
>PRK05866 short chain dehydrogenase; Provisional
Probab=77.29 E-value=4.2 Score=42.33 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=30.9
Q ss_pred CCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 411 g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+.+++|++++|.|. |.+|.++|+.|.+.|++|+.+ +.
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~-~R 72 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAV-AR 72 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-EC
Confidence 34678899999985 999999999999999996554 44
No 360
>PRK06500 short chain dehydrogenase; Provisional
Probab=77.19 E-value=3.9 Score=40.30 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=29.9
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|++|+|.|. |.+|+++++.|.+.|++|+.+ ++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~-~r 38 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAIT-GR 38 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe-cC
Confidence 467899999985 999999999999999996554 44
No 361
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.19 E-value=4.1 Score=40.85 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=29.1
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaV 445 (629)
+++|++|+|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 45 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIIT 45 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 588999999985 889999999999999996544
No 362
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.18 E-value=3.8 Score=41.28 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=29.2
Q ss_pred CCCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaV 445 (629)
.|+|++++|.|.. .+|.++|+.|.+.|++||.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 5889999999974 79999999999999997654
No 363
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=77.13 E-value=3.9 Score=40.34 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.1
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006848 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 414 L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaV 445 (629)
|++++++|.| .|.+|+++++.|.+.|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 5789999998 5999999999999999996554
No 364
>PRK09135 pteridine reductase; Provisional
Probab=77.12 E-value=4.3 Score=39.86 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=29.4
Q ss_pred CCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeC
Q 006848 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSD 447 (629)
..+++|+|.|. |.+|+++++.|.+.|++|+.++-
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 46789999985 99999999999999999877753
No 365
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.02 E-value=3.8 Score=41.21 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=29.3
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaV 445 (629)
+++||+++|.| .+.+|+.+|+.|.+.|++|+.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 57899999998 5899999999999999997655
No 366
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=76.91 E-value=3.8 Score=43.61 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=30.6
Q ss_pred CCCCCCcEEEEecC---ccHHHHHHHHHHHCCCEEEE
Q 006848 411 NKELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVS 444 (629)
Q Consensus 411 g~~L~GkrVaIQGf---GNVG~~aA~~L~e~GAkVVa 444 (629)
+.+|+||+++|-|. .-.|..+|+.|++.|++||.
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 45799999999999 66999999999999999776
No 367
>PRK09620 hypothetical protein; Provisional
Probab=76.89 E-value=4.1 Score=41.84 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=29.6
Q ss_pred CCCcEEEEecC-----------------ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGS-----------------GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGf-----------------GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
|+|++|.|.+- |-+|+++|+.|.+.|++|+.|+..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47888888844 899999999999999998877643
No 368
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=76.87 E-value=4.2 Score=41.02 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=31.9
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
....+++|+|.| .|.+|+.+++.|.+.|.+|++++..
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence 356789999999 5999999999999999998877643
No 369
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.73 E-value=4.9 Score=39.72 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=30.2
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++++|+|.| .|-+|+++++.|.+.|++|+.+.++
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKK 39 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46789999998 5789999999999999997665543
No 370
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=76.64 E-value=3.5 Score=42.58 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=28.6
Q ss_pred CCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006848 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVS 446 (629)
+|++|.|.| .|-+|+++++.|.+.|.+|+++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 468999999 69999999999999999987665
No 371
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.57 E-value=7.3 Score=40.84 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=26.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCC---EEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGA---IPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GA---kVVaVSDs 448 (629)
+++.|+|+||+|+.+++-|.+.|. .-|.++|.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC
Confidence 479999999999999999999884 12566665
No 372
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=76.52 E-value=3.1 Score=45.26 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=32.3
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~ 449 (629)
.|+.++|+|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678999999999999999999999998667887753
No 373
>PRK06194 hypothetical protein; Provisional
Probab=76.52 E-value=4.3 Score=41.31 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=29.5
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++++++|.|. |.+|+++|+.|.+.|++|+. .|.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~-~~r 38 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVL-ADV 38 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEE-EeC
Confidence 467899999985 89999999999999999654 454
No 374
>PRK07856 short chain dehydrogenase; Provisional
Probab=76.49 E-value=4.7 Score=40.23 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=29.9
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+++|++++|.|. |-+|+++|+.|.+.|++|+.++
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~ 37 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCG 37 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3678999999985 8899999999999999965553
No 375
>PRK07411 hypothetical protein; Validated
Probab=76.44 E-value=3 Score=46.07 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=31.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|+..+|.|.|+|-+|..+|+.|...|..=+++.|.
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~ 70 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF 70 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 356789999999999999999999999876788775
No 376
>PRK09242 tropinone reductase; Provisional
Probab=76.40 E-value=4.3 Score=40.55 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=29.6
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
.++||+++|.|. |.+|..+++.|.+.|++|+.++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~ 40 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVA 40 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 578999999985 8999999999999999965553
No 377
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=76.36 E-value=3.1 Score=44.80 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=28.2
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-++|+|.|.|..|...|..++..|.. |.+-|.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~ 34 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYD-VVLKDI 34 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCc-eEEEeC
Confidence 47999999999999999999996677 678888
No 378
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.35 E-value=4.4 Score=41.52 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=29.4
Q ss_pred CCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|++++|.|.+ .+|..+|+.|.+.|++|+ +.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vi-l~~r 40 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQ 40 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEE-EEec
Confidence 789999999986 599999999999999965 5554
No 379
>PRK07825 short chain dehydrogenase; Provisional
Probab=76.33 E-value=4.7 Score=40.80 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=29.6
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++++|.|. |.+|+.+|+.|.+.|++|+ +++.
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~-~~~r 37 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVA-IGDL 37 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEEC
Confidence 578899999985 8999999999999999954 4444
No 380
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=76.19 E-value=7.9 Score=39.76 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=29.2
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCE-EEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAk-VVaVSDs 448 (629)
..|.+|+|.|.|.||..+++.+...|++ |+++ |.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-~~ 153 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA-DP 153 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-CC
Confidence 3789999999999999999999999997 5544 54
No 381
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=76.13 E-value=3.4 Score=39.70 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=27.3
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaV 445 (629)
+++|++|+|.|.|+-|.-+|..|++.|.+|.-+
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~ 196 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLV 196 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEE
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEE
Confidence 688999999999999999999999999875433
No 382
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=76.10 E-value=7.7 Score=41.42 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=34.1
Q ss_pred HHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 407 l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+...+....|.+|+|.|.|.||..+++.+...|++|+.++++
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~ 213 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS 213 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 334444457899999999999999999999999998777654
No 383
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=75.99 E-value=6.5 Score=42.14 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=28.9
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCC-EEEEEeCC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSDA 448 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GA-kVVaVSDs 448 (629)
.+++|+|.|.|+||+.+|..|...|. .-+.+-|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 57899999999999999999998885 23677787
No 384
>PRK08265 short chain dehydrogenase; Provisional
Probab=75.95 E-value=4.6 Score=40.82 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=30.0
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++++++|.|. |-+|+.+|+.|.+.|++| .+.|+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V-~~~~r 38 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARV-AIVDI 38 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEE-EEEeC
Confidence 578999999985 899999999999999995 45555
No 385
>PLN02206 UDP-glucuronate decarboxylase
Probab=75.92 E-value=3.9 Score=45.75 Aligned_cols=37 Identities=35% Similarity=0.634 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006848 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 411 g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
|..-++++|.|.| .|-||+++++.|.+.|.+|+++..
T Consensus 114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred ccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence 3445679999999 599999999999999999887743
No 386
>PRK05854 short chain dehydrogenase; Provisional
Probab=75.88 E-value=4.4 Score=42.57 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=30.1
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+++|++++|.|. +-+|.++|+.|.+.|++|+.++
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999985 7899999999999999976553
No 387
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=75.85 E-value=4.7 Score=35.63 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=22.7
Q ss_pred EEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006848 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 419 VaIQGfGNVG~~aA~~L~e~GAkVVaVS 446 (629)
|+|.|+|.+|+.+++.|.+.+.+|+.|.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid 28 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVID 28 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEE
Confidence 6899999999999999999776765554
No 388
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=75.84 E-value=4.7 Score=48.02 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=28.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|..|..+|..++..|.. |.+-|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~ 344 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTP-IVMKDI 344 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCe-EEEEeC
Confidence 5799999999999999999999998 677787
No 389
>PRK12827 short chain dehydrogenase; Provisional
Probab=75.82 E-value=4.6 Score=39.64 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVS 446 (629)
++++++++|.| .|-+|+++|+.|.+.|++|+.+.
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence 46789999998 59999999999999999976654
No 390
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=75.63 E-value=3.2 Score=43.24 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIAYG 439 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~G 439 (629)
+..+|+|.|.|-+|.++++.|++.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 5689999999999999999999986
No 391
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=75.58 E-value=4.2 Score=41.72 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=26.8
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++|.|.||+|..+|+.|...|..|+ |+.+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~ 32 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSS 32 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecC
Confidence 588999999999999999999999954 5443
No 392
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=75.50 E-value=4.4 Score=41.06 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=28.2
Q ss_pred CCCCcEEEEecC---ccHHHHHHHHHHHCCCEEEE
Q 006848 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVS 444 (629)
Q Consensus 413 ~L~GkrVaIQGf---GNVG~~aA~~L~e~GAkVVa 444 (629)
+++|++++|.|. +-+|..+|+.|.+.|++|+.
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~ 37 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGI 37 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEE
Confidence 578999999997 47999999999999999643
No 393
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.42 E-value=5.4 Score=38.84 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++.++|+|.| .|.+|+++++.|.+.|++|+.++.+
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 35678999998 5999999999999999997666655
No 394
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=75.42 E-value=7.7 Score=40.91 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-++|.+.+++. .+.+ .+++|+|.|.|-.|+.++..|.+.|++-|.|.++
T Consensus 106 D~~Gf~~~L~~----~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 106 DYIAIAKLLAS----YQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CHHHHHHHHHh----cCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 36677666653 3444 3579999999999999999999999876888887
No 395
>PTZ00117 malate dehydrogenase; Provisional
Probab=75.40 E-value=8.7 Score=41.18 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=29.6
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCC-CEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYG-AIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~G-AkVVaVSDs 448 (629)
.+.++|+|.|.|+||+.+|..|...| +. |.+-|.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di 37 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDV 37 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEEC
Confidence 46679999999999999999999888 56 778887
No 396
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=75.36 E-value=7.5 Score=44.71 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.5
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.+.+|+|.|+|.+|..++..+..+|++ |.+.|.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~ 195 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDT 195 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 34578999999999999999999999999 566676
No 397
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=75.33 E-value=6.1 Score=43.38 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=30.5
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++..++++|.|+|.+|+.+++.|.+.|..| .+.|.
T Consensus 227 ~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v-~vid~ 262 (453)
T PRK09496 227 LEKPVKRVMIVGGGNIGYYLAKLLEKEGYSV-KLIER 262 (453)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhCCCeE-EEEEC
Confidence 3456789999999999999999999999996 44455
No 398
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=75.16 E-value=4.5 Score=38.26 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=27.2
Q ss_pred EEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 419 CVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 419 VaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
|+|.|. |+||+.+++.|.+.|.+|++++-+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 678885 999999999999999999999865
No 399
>PRK07577 short chain dehydrogenase; Provisional
Probab=75.15 E-value=5.1 Score=39.19 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeC
Q 006848 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSD 447 (629)
.+++++|.|. |.+|.++|+.|.+.|++|+.++-
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r 35 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIAR 35 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 5788999985 89999999999999999877653
No 400
>PRK06914 short chain dehydrogenase; Provisional
Probab=75.07 E-value=4.9 Score=40.75 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006848 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVS 446 (629)
++++++|.| .|-+|.++|+.|.+.|++|++++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEe
Confidence 578888988 59999999999999999987764
No 401
>PRK08017 oxidoreductase; Provisional
Probab=75.06 E-value=4.5 Score=40.16 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=26.8
Q ss_pred cEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 417 LRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
++|+|.|. |.+|+++|+.|.+.|++|+.++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 68999997 9999999999999999976654
No 402
>PRK08589 short chain dehydrogenase; Validated
Probab=75.04 E-value=5 Score=40.87 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaV 445 (629)
.++|++++|.|. |-+|..+|+.|.+.|++|+.+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~ 36 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAV 36 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999999986 889999999999999997655
No 403
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.98 E-value=5.1 Score=39.23 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=30.5
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.+++++|.|. |.+|..+|+.|.+.|++|+.+.+.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r 38 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDI 38 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 477899999985 999999999999999997665354
No 404
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=74.93 E-value=18 Score=40.30 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=26.6
Q ss_pred cEEEEec-CccHHHHHHHHHHHC--CCEEEEEe-CC
Q 006848 417 LRCVVSG-SGKIAMHVLEKLIAY--GAIPVSVS-DA 448 (629)
Q Consensus 417 krVaIQG-fGNVG~~aA~~L~e~--GAkVVaVS-Ds 448 (629)
|+|+|.| .|++|..+.+.+.+. ..+|++++ ++
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~ 37 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK 37 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC
Confidence 6899999 799999988888654 68999998 55
No 405
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=74.90 E-value=4.3 Score=43.90 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=29.0
Q ss_pred CCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
++++|+|.|. |.||+++++.|.+.|..|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 5689999997 9999999999999999987775
No 406
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=74.88 E-value=4.8 Score=47.79 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=27.3
Q ss_pred cEEEEecCccHHHHHHHHHH-HCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~-e~GAkVVaVSDs 448 (629)
++|+|.|.|..|...|..++ ..|.. |.+.|.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~ 341 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDI 341 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCe-EEEEeC
Confidence 68999999999999999988 77988 667776
No 407
>PLN02214 cinnamoyl-CoA reductase
Probab=74.70 E-value=4.6 Score=42.98 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.4
Q ss_pred CCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeC
Q 006848 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSD 447 (629)
+++++|+|.|. |-+|+++++.|.+.|.+|++++-
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 42 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVR 42 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 57899999997 99999999999999999877653
No 408
>PRK05993 short chain dehydrogenase; Provisional
Probab=74.66 E-value=4.8 Score=41.12 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=27.7
Q ss_pred CCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+++|+|.|. |.+|+++|+.|.+.|++|+.++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~ 35 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATC 35 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 3678999987 9999999999999999976653
No 409
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=74.64 E-value=21 Score=39.92 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=25.4
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-++|.|.|.|.||..+|..|.+ |..| .+-|.
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V-~g~D~ 36 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQV-VGFDV 36 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEE-EEEeC
Confidence 4789999999999999999876 6775 45565
No 410
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=74.64 E-value=7.9 Score=41.98 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=30.9
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-.|.+|+|.|.|.||..+++.+...|++|++++++
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 36899999999999999999999999998777554
No 411
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=74.58 E-value=5.3 Score=39.92 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=29.7
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.+++++|.|. |-+|.++|+.|.+.|++|+.+ |.
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~-~r 38 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIA-DI 38 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-cC
Confidence 467899999985 999999999999999996544 54
No 412
>PRK12744 short chain dehydrogenase; Provisional
Probab=74.57 E-value=5.3 Score=40.03 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=30.3
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
.+++++|+|.| .|.+|.++|+.|.+.|++|+.+..
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence 57889999987 589999999999999999776654
No 413
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=74.56 E-value=30 Score=31.66 Aligned_cols=98 Identities=22% Similarity=0.328 Sum_probs=53.2
Q ss_pred cEEEEec----CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCC
Q 006848 417 LRCVVSG----SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (629)
Q Consensus 417 krVaIQG----fGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~ 492 (629)
|+|+|.| -++.|..+.+.|.+.|.+|+.|.-..+.|. | +.- |++. +
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~---G------------------~~~----y~sl-----~ 50 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL---G------------------IKC----YPSL-----A 50 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET---T------------------EE-----BSSG-----G
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC---c------------------EEe----eccc-----c
Confidence 6899999 599999999999999999888844322111 1 111 1211 1
Q ss_pred CcccccccEEeecCCCCccChhhHHHHHHcc------CCCCCCHHHHHHHHHcCCeee-ch
Q 006848 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSG------SNMPCTPEAVDVLKKANVLIA-PA 546 (629)
Q Consensus 493 ei~~~~cDIliPcA~~n~It~enA~~lI~eG------AN~P~TpeA~~iL~erGIl~i-PD 546 (629)
++ -.++|+++-|.....+-+ -...+..-| .-+-..+++.+.+++.|+.++ |.
T Consensus 51 e~-p~~iDlavv~~~~~~~~~-~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 51 EI-PEPIDLAVVCVPPDKVPE-IVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp GC-SST-SEEEE-S-HHHHHH-HHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEESS
T ss_pred CC-CCCCCEEEEEcCHHHHHH-HHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeCC
Confidence 11 357788877763322211 112222222 112456888999999999988 64
No 414
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=74.55 E-value=3.5 Score=45.43 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=31.2
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
|+..+|.|.|.|-+|..+|+.|...|..=+.+.|.
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~ 74 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF 74 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 56789999999999999999999999866788774
No 415
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.48 E-value=4.6 Score=44.50 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=31.6
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++.+++|.|.|+|.-|..++++|.+.|++ |.++|.
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~-v~~~D~ 37 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVT-PRVIDT 37 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCe-EEEEcC
Confidence 35689999999999999999999999998 678997
No 416
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=74.36 E-value=1.8 Score=49.13 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=27.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEE
Q 006848 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPV 443 (629)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVV 443 (629)
.|+|+||+|.|+|+.|..-|.-|...|..|+
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 5899999999999999988888888898854
No 417
>PRK06198 short chain dehydrogenase; Provisional
Probab=74.36 E-value=5.3 Score=39.82 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=30.4
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++++|+|.|. |.+|..+++.|.+.|++.|.+.++
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r 39 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGR 39 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcC
Confidence 478899999985 899999999999999994555566
No 418
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=74.33 E-value=8.9 Score=40.53 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=32.6
Q ss_pred HHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCC-EEEEEeC
Q 006848 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSD 447 (629)
Q Consensus 407 l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GA-kVVaVSD 447 (629)
+...+..-.|.+|.|.|.|.||+.+++.+...|+ +|++++.
T Consensus 169 l~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~ 210 (361)
T cd08231 169 LDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDG 210 (361)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3444433478999999999999999999999999 8766644
No 419
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=74.32 E-value=6.8 Score=42.08 Aligned_cols=57 Identities=26% Similarity=0.280 Sum_probs=40.0
Q ss_pred CCcchHHHHHHHH-HHHHHcCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 392 TEATGYGLVFFAQ-LILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 392 ~eATG~GV~~~~~-~~l~~~g~~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+|..+++.++.- .++.....--.|.+|.|+| .|.||..+++++..+|+.+|+++.+
T Consensus 118 ~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s 176 (326)
T COG0604 118 EEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS 176 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecC
Confidence 4566676665433 3333322111289999998 8999999999999999776777665
No 420
>PLN02253 xanthoxin dehydrogenase
Probab=74.32 E-value=5.3 Score=40.55 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|++++|.|. |.+|+++|+.|.+.|++|+.+ |.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~-~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIV-DL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 578999999985 899999999999999996554 44
No 421
>PRK07831 short chain dehydrogenase; Provisional
Probab=74.28 E-value=5.2 Score=40.19 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=29.2
Q ss_pred CCCCcEEEEecC-c-cHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-G-KIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-G-NVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|++++|.|. | .+|..+|+.|.+.|++|+ +.|+
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEeC
Confidence 457899999996 6 699999999999999954 5554
No 422
>PRK08862 short chain dehydrogenase; Provisional
Probab=74.13 E-value=5.5 Score=39.96 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=29.5
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++++|.|. +.+|..+|+.|.+.|++|+. .++
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~-~~r 37 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLIL-CDQ 37 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEE-EcC
Confidence 578999999986 55999999999999999654 454
No 423
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=74.11 E-value=37 Score=38.25 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=28.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVS 446 (629)
+||.|.|-|-.+..+++.+.++|.++|++.
T Consensus 6 ~~vLi~~~geia~~ii~aa~~lG~~~v~~~ 35 (467)
T PRK12833 6 RKVLVANRGEIAVRIIRAARELGMRTVAAC 35 (467)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEE
Confidence 689999999999999999999999988775
No 424
>PRK06182 short chain dehydrogenase; Validated
Probab=74.05 E-value=5.4 Score=40.42 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=28.0
Q ss_pred CCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
++++++|.|. |.+|+++|+.|.+.|++|++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 5789999995 8999999999999999976654
No 425
>PLN02858 fructose-bisphosphate aldolase
Probab=74.05 E-value=5.7 Score=50.71 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=28.6
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
...+|.+.|+|+.|..+|+.|.+.|..| .|-|.
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v-~v~dr 35 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKV-QAFEI 35 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeE-EEEcC
Confidence 4578999999999999999999999984 56565
No 426
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.91 E-value=5.4 Score=40.52 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=28.0
Q ss_pred CCCCcEEEEec---CccHHHHHHHHHHHCCCEEEE
Q 006848 413 ELKGLRCVVSG---SGKIAMHVLEKLIAYGAIPVS 444 (629)
Q Consensus 413 ~L~GkrVaIQG---fGNVG~~aA~~L~e~GAkVVa 444 (629)
.++|++++|.| .+-+|+.+|+.|.+.|++|+.
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~ 37 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAF 37 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 37899999999 458999999999999999654
No 427
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=73.76 E-value=5.5 Score=39.75 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=29.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++++|.| .|.+|.++|+.|.+.|++|+ +.|+
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vv-l~~r 41 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEII-INDI 41 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEE-EEcC
Confidence 57899999998 58999999999999999965 4554
No 428
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.74 E-value=3.9 Score=45.25 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=29.2
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.-+|+|.|.|..|..+|++|.+.|++ |++||.
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~-v~~~D~ 37 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIP-FAVMDS 37 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCe-EEEEeC
Confidence 35899999999999999999999998 688997
No 429
>PLN00198 anthocyanidin reductase; Provisional
Probab=73.62 E-value=5.1 Score=42.09 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVS 446 (629)
..++++|.|.| .|-+|+++++.|.+.|++|++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 45689999998 79999999999999999976554
No 430
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.59 E-value=6.1 Score=38.96 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=29.3
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++++++|.| .|.+|.++++.|.+.|++|+.+ ++
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~-~r 39 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLL-AR 39 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 46788999998 5799999999999999996554 44
No 431
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=73.58 E-value=4.7 Score=48.20 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=28.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|+|.|.|..|..+|..+...|.. |.+-|.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~-V~l~d~ 366 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLK-TVLKDA 366 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCc-EEEecC
Confidence 5899999999999999999999998 567787
No 432
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=73.55 E-value=5.6 Score=40.31 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=30.6
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++++++++|.|. |.+|+++|+.|.+.|++|+ +.|+
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~-~~~r 42 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVA-ILDR 42 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 3678999999985 8999999999999999954 4555
No 433
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.55 E-value=4.4 Score=44.64 Aligned_cols=33 Identities=27% Similarity=0.179 Sum_probs=29.4
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+.++|.|.|+|..|..+|+.|.+.|++ |.++|.
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~-V~g~D~ 34 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVY-VIGVDK 34 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCE-EEEEeC
Confidence 347899999999999999999999998 667886
No 434
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.50 E-value=4.3 Score=46.53 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.2
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
..|++|+|+|.|..|..+|..|.+.|++ |.|.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence 4689999999999999999999999999 556664
No 435
>PRK08278 short chain dehydrogenase; Provisional
Probab=73.43 E-value=5.9 Score=40.43 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVS 446 (629)
+++|++++|.| .|-+|.++|+.|.+.|++|+.++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 37 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAA 37 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 47889999998 48999999999999999976654
No 436
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=73.41 E-value=5.6 Score=36.88 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=26.2
Q ss_pred EEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 419 VaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
|+|.|.|.+|...|..|++.|..|..++-+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999997666554
No 437
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=73.40 E-value=10 Score=39.79 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=30.7
Q ss_pred CCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-.|.+|.|.|. |.||..+++++..+|++|++++.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46899999997 999999999999999998776654
No 438
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.40 E-value=4 Score=45.79 Aligned_cols=33 Identities=30% Similarity=0.217 Sum_probs=29.4
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-.|++|.|.|+|.-|..+|++|.+ |++ |.|+|.
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~-v~v~D~ 36 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYD-VIVYDD 36 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCE-EEEECC
Confidence 468999999999999999999994 998 678885
No 439
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=73.36 E-value=9.5 Score=40.71 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=30.5
Q ss_pred CCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-.|.+|+|.|. |.||..+++++...|++|++++.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~ 192 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS 192 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC
Confidence 46899999998 999999999999999998776543
No 440
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=73.36 E-value=6.3 Score=42.73 Aligned_cols=55 Identities=25% Similarity=0.251 Sum_probs=41.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 387 GSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 387 Gs~~r~eATG~GV~~~~~~~l~~~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
|++|-+..|+| ++ |.+.|..-.|.||+|++. |.||+-+.++..-+|++||+++-+
T Consensus 129 gvLGmpG~TAY---~g----Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg 184 (340)
T COG2130 129 GVLGMPGLTAY---FG----LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG 184 (340)
T ss_pred hhcCCchHHHH---HH----HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC
Confidence 45554444443 33 345566668999999995 999999988888899999999987
No 441
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=73.30 E-value=5.8 Score=36.67 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=27.1
Q ss_pred cEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
|+|+|.| .+.+|..+|+.|.+.|+++|.+.+.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r 33 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSR 33 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeee
Confidence 6788887 6999999999999998876666665
No 442
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.13 E-value=4.3 Score=44.51 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=26.3
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaV 445 (629)
++|+|.|+|++|+.+++.|.+.|..|+.|
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vi 29 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVI 29 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 47999999999999999999999997655
No 443
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.12 E-value=4.5 Score=44.74 Aligned_cols=30 Identities=33% Similarity=0.269 Sum_probs=28.0
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+|.|.|.|..|..+|+.|.+.|++ |.++|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~-V~~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWE-VVVSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCE-EEEECC
Confidence 689999999999999999999998 688996
No 444
>PLN02427 UDP-apiose/xylose synthase
Probab=73.02 E-value=5.5 Score=42.86 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEecC-ccHHHHHHHHHHHC-CCEEEEEeC
Q 006848 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSD 447 (629)
Q Consensus 411 g~~L~GkrVaIQGf-GNVG~~aA~~L~e~-GAkVVaVSD 447 (629)
|+.++.+||.|.|. |-+|+++++.|.+. |.+|+++..
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 45677789999995 99999999999998 589888753
No 445
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=72.92 E-value=12 Score=40.67 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=28.7
Q ss_pred cEEEEecC-ccHHHHHHHHHHHC-CCEEEEEeCC
Q 006848 417 LRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e~-GAkVVaVSDs 448 (629)
++|+|.|. |.||+.+++.|.+. +.++++++|.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~ 36 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR 36 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc
Confidence 68999996 99999999999886 7899999885
No 446
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=72.91 E-value=5.4 Score=40.04 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=26.4
Q ss_pred cEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++|.|.| .|++|..++..|.+.|..|+ +.+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSR 32 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEc
Confidence 4799997 99999999999999998854 5555
No 447
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=72.87 E-value=6.7 Score=38.83 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.7
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSD 447 (629)
.+++++++.|.|. |.+|+.+|+.|.+.|++|+.+.-
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~ 40 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQ 40 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 4588999999985 78999999999999999766643
No 448
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=72.82 E-value=6.1 Score=39.51 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaV 445 (629)
.+++++|+|.| .|.+|.++|+.|.+.|++|+.+
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~ 41 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVS 41 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 47899999998 4899999999999999997654
No 449
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.76 E-value=6 Score=40.16 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=29.4
Q ss_pred CCCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++||+++|.|.+ -+|..+|+.|.+.|++|+. .+.
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~-~~r 42 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWF-TYQ 42 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEE-EeC
Confidence 5789999999986 4999999999999999654 454
No 450
>PRK06114 short chain dehydrogenase; Provisional
Probab=72.59 E-value=6.4 Score=39.42 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=29.8
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|++++|.| .|-+|+++|+.|.+.|++|+ +.|+
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~-~~~r 40 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVA-LFDL 40 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 57899999998 57899999999999999965 4454
No 451
>PLN02858 fructose-bisphosphate aldolase
Probab=72.48 E-value=6 Score=50.52 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=28.4
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
..++|.+.|+|++|..+|+.|...|.. |.+.|.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~-V~v~dr 355 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFS-VCGYDV 355 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCE-EEEEeC
Confidence 357899999999999999999999998 456564
No 452
>PRK12359 flavodoxin FldB; Provisional
Probab=72.34 E-value=6.1 Score=39.03 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=35.7
Q ss_pred CCCCCcEEEEecCccH-HH---------HHHHHHHHCCCEEEEEeCCCCceeCC
Q 006848 412 KELKGLRCVVSGSGKI-AM---------HVLEKLIAYGAIPVSVSDAKGYLVDE 455 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNV-G~---------~aA~~L~e~GAkVVaVSDs~G~Iydp 455 (629)
.+|+||+|++-|+|+- |+ .+.+.|.+.|+++|+-....|+-|+.
T Consensus 75 ~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~ 128 (172)
T PRK12359 75 LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTS 128 (172)
T ss_pred CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCccccc
Confidence 4799999999999985 32 36667777999999998888877764
No 453
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=72.28 E-value=15 Score=40.86 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=30.2
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCcee
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~Iy 453 (629)
.++|+|.|.|.+|..+|..|.+.|.+| ++.+....+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~V-tli~~~~~ll 206 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKV-TIVEMAPQLL 206 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeE-EEEecCCCcC
Confidence 479999999999999999999999995 5655544444
No 454
>PRK12747 short chain dehydrogenase; Provisional
Probab=72.23 E-value=6.7 Score=39.07 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=28.1
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006848 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 414 L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVS 446 (629)
++|++++|.| .|-+|.++|+.|.+.|++|+.+.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~ 35 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHY 35 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEc
Confidence 4689999998 58999999999999999966543
No 455
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=72.20 E-value=6.3 Score=39.61 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=29.5
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|++++|.|. |.+|+++|+.|.+.|++|+.+ |+
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~-~r 38 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGARVAVL-ER 38 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 368899999985 789999999999999996554 44
No 456
>PRK06701 short chain dehydrogenase; Provisional
Probab=72.07 E-value=6.2 Score=40.92 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=29.6
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaV 445 (629)
.+++|++++|.|. |-+|.++|+.|.+.|++|+.+
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~ 76 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIV 76 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4788999999985 889999999999999996544
No 457
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.00 E-value=6.7 Score=42.84 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=36.8
Q ss_pred HHHHcCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 406 ILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 406 ~l~~~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|++.|.. .|++|.|.|.|-+|.-+.++...+|++|++||-+
T Consensus 173 pLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~ 214 (360)
T KOG0023|consen 173 PLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTS 214 (360)
T ss_pred hhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCC
Confidence 35566766 8999999999999999999999999999999877
No 458
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=71.92 E-value=6.7 Score=38.49 Aligned_cols=35 Identities=34% Similarity=0.524 Sum_probs=29.7
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++++++|.| .|.+|+++++.|.+.|+.| .+.++
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v-~~~~~ 38 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIV-GLHGT 38 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEE-EEEcC
Confidence 57889999998 5999999999999999974 55554
No 459
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=71.85 E-value=15 Score=34.41 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=52.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEec--------CccHHHHHHHHHHHCCCEEEEEeCCCCce
Q 006848 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSG--------SGKIAMHVLEKLIAYGAIPVSVSDAKGYL 452 (629)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~-g~~L~GkrVaIQG--------fGNVG~~aA~~L~e~GAkVVaVSDs~G~I 452 (629)
.++..+|-|....+++.+.+.. ...++...|.|.| .|.-...+.+-|.+.|.+|+.|-|.+-.-
T Consensus 38 kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpiP 110 (114)
T TIGR03628 38 ADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIP 110 (114)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 4678899999988888777642 3567888999999 67888899999999999999999975433
No 460
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=71.66 E-value=4.9 Score=39.33 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=28.1
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~ 449 (629)
+|+|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998657787763
No 461
>PLN02686 cinnamoyl-CoA reductase
Probab=71.52 E-value=6.4 Score=42.50 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=32.4
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.++++|.|.|. |-+|+++++.|.+.|++|+++++.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4677899999986 999999999999999998877664
No 462
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.49 E-value=6.4 Score=41.18 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=30.6
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++|++++|.|. |.+|.++|+.|.+.|++|| +.|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv-~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVV-VNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EecC
Confidence 5789999999985 7899999999999999965 4454
No 463
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=71.46 E-value=7.4 Score=38.46 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=30.0
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006848 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
+++++++.|.| .|-+|+++|+.|.+.|++|+.+..
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~ 38 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYN 38 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence 46789999998 699999999999999999875544
No 464
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=71.37 E-value=6.1 Score=39.01 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=27.1
Q ss_pred CcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 416 GLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 416 GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++++|.| .|-+|+.+++.|.+.|++|+.+ ++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~-~r 33 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVN-DL 33 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEE-eC
Confidence 46899998 5999999999999999996655 54
No 465
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.34 E-value=5.9 Score=40.10 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=33.2
Q ss_pred CCCCCcEEEEecCcc-HHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+|.|++|.+.|.|. +|+.+++.|+..||+||+|+-.
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~ 40 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARN 40 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecC
Confidence 478999999999874 8999999999999999999863
No 466
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=71.33 E-value=15 Score=40.85 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=33.0
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHH
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYM 461 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~ 461 (629)
+++|+|.|.|.+|..+|..|.+.|.+| ++-+..-.+. .++|.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~V-tli~~~~~il--~~~d~~ 208 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSET-HLVIRHERVL--RSFDSM 208 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcE-EEEecCCCCC--cccCHH
Confidence 589999999999999999999999995 5555433343 246654
No 467
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=71.30 E-value=5.4 Score=46.69 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=29.8
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.|++|+|+|.|..|..+|..|.+.|.+ |.|-|.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~ 358 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDR 358 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence 689999999999999999999999999 566665
No 468
>PRK12743 oxidoreductase; Provisional
Probab=71.18 E-value=7.4 Score=39.04 Aligned_cols=33 Identities=15% Similarity=-0.039 Sum_probs=27.8
Q ss_pred CcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 416 GLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 416 GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+++|+|.|. |.+|+.+|+.|.+.|++|+.+..+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~ 35 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHS 35 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 578888875 789999999999999998766544
No 469
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.17 E-value=6.2 Score=40.53 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=29.3
Q ss_pred CCCCcEEEEecC---ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf---GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-++||+++|.|. +.+|..+|+.|.+.|++|+ +++.
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~-l~~r 44 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELA-FTYQ 44 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEE-EEcC
Confidence 467899999997 4799999999999999965 4443
No 470
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=71.13 E-value=5.4 Score=42.26 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=32.4
Q ss_pred CcEEEEecCccHHHHHHHHHHHC------C---CEEEEEeCCCCceeCCC
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIAY------G---AIPVSVSDAKGYLVDED 456 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~------G---AkVVaVSDs~G~Iydpd 456 (629)
...|+|.|+|+||+++...+... + ..||+|+|+.+.+...|
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD 52 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKD 52 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccc
Confidence 35689999999999998776542 2 48999999998876554
No 471
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=71.11 E-value=6.9 Score=39.44 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=30.3
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++++++++|.|. |.+|.++|+.|.+.|++|+.+ ++
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~-~~ 42 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFN-DI 42 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE-eC
Confidence 3678999999875 899999999999999996544 54
No 472
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=71.04 E-value=16 Score=35.07 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=53.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEec--------CccHHHHHHHHHHHCCCEEEEEeCCCCceeC
Q 006848 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSG--------SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVD 454 (629)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~-g~~L~GkrVaIQG--------fGNVG~~aA~~L~e~GAkVVaVSDs~G~Iyd 454 (629)
.++..+|-|....+++.+.+.. ...++...|.|-| .|.-...+.+-|...|.+|+.|-|.+-.-+|
T Consensus 45 kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiPhN 119 (132)
T PRK09607 45 ADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD 119 (132)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 4677899999888888777642 3577888999999 7788889999999999999999998554443
No 473
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=70.93 E-value=5 Score=42.75 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=32.0
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
|...+|.|.|.|-+|..+|+.|...|.+=|+|.|.
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~ 51 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDT 51 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 56789999999999999999999999987888885
No 474
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.92 E-value=6.4 Score=39.89 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=29.7
Q ss_pred CCCCcEEEEecC---ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf---GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++|++++|.|. +-+|..+|+.|.+.|++|+ +.|.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~-l~~r 41 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVV-LTGF 41 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEE-EecC
Confidence 478999999995 7899999999999999954 5554
No 475
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=70.82 E-value=6.5 Score=41.38 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=30.2
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
..|.+|+|.|.|.||..+++.+...|+++|.+.|+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~ 193 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI 193 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 46899999999999999999999999986555554
No 476
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=70.65 E-value=12 Score=39.75 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=32.0
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+.+++++|-|. +..|..+|+.|++.|..+|-|+=+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 467899999994 999999999999999998888764
No 477
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=70.52 E-value=5.6 Score=41.25 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=25.4
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaV 445 (629)
++|+|.|.|+||..+|..|.+.|..|+.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~ 29 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFL 29 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEE
Confidence 47999999999999999999999885444
No 478
>PRK06139 short chain dehydrogenase; Provisional
Probab=70.52 E-value=7 Score=41.81 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++++++|+|.|. |-+|..+|+.|.+.|++|+.+ +.
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~-~R 39 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLA-AR 39 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEE-EC
Confidence 3578999999996 899999999999999997654 44
No 479
>PRK07985 oxidoreductase; Provisional
Probab=70.43 E-value=6.8 Score=40.75 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=28.8
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEE
Q 006848 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVS 444 (629)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVa 444 (629)
.++|++++|.|. |.+|.++|+.|.+.|++|+.
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~ 78 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAI 78 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEE
Confidence 588999999985 89999999999999999764
No 480
>PLN02572 UDP-sulfoquinovose synthase
Probab=70.36 E-value=6 Score=44.16 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=30.8
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
..+++++|.|.|. |-+|+++++.|.+.|++|+++.
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 4688999999985 9999999999999999976654
No 481
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=70.32 E-value=11 Score=40.78 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=27.8
Q ss_pred cEEEEecC-ccHHHHHHHHHHHC-CCEEEEEeCC
Q 006848 417 LRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e~-GAkVVaVSDs 448 (629)
++|+|.|. |-||+.+++.|.+. +.+++++.++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s 34 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSS 34 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEecc
Confidence 47999998 99999999999987 7888878665
No 482
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=70.30 E-value=17 Score=33.40 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=51.2
Q ss_pred CCCCCcchHHHHHHHHHHHHH-cCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeC
Q 006848 389 SLRTEATGYGLVFFAQLILAD-MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVD 454 (629)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~-~g~~L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G~Iyd 454 (629)
.+....|-|....+++.+.+. ....++...|.+-|+|.=-..+.+.|...|.+|+.|.|....-||
T Consensus 35 kg~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D~T~iphN 101 (108)
T TIGR03632 35 KGSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKDVTPIPHN 101 (108)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 355688888887777776654 235678889999999987778888899999999999998655443
No 483
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=70.21 E-value=6.3 Score=43.94 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=29.6
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
..|++|+|.|.|++|.-+|+.|.+.|++ |++...
T Consensus 270 ~~gk~VvVIGgG~~a~d~A~~l~~~G~~-Vtlv~~ 303 (449)
T TIGR01316 270 YAGKSVVVIGGGNTAVDSARTALRLGAE-VHCLYR 303 (449)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCE-EEEEee
Confidence 4689999999999999999999999999 555443
No 484
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=70.13 E-value=4.7 Score=44.33 Aligned_cols=30 Identities=33% Similarity=0.382 Sum_probs=27.7
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
+|.|.|.|..|..+|++|.+.|++ |++||.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~-V~~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAE-VTVTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCE-EEEEeC
Confidence 478999999999999999999999 789996
No 485
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=69.96 E-value=5.9 Score=42.89 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=27.5
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+|+|+|.|-+|..+|..|++.|.+ |+|-|.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~-V~vle~ 32 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQ-VTVFDR 32 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCe-EEEEeC
Confidence 4799999999999999999999999 566665
No 486
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.88 E-value=7 Score=39.76 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=28.3
Q ss_pred CCCCcEEEEecC---ccHHHHHHHHHHHCCCEEEEE
Q 006848 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (629)
Q Consensus 413 ~L~GkrVaIQGf---GNVG~~aA~~L~e~GAkVVaV 445 (629)
.++|++++|.|. +-+|..+|+.|.+.|++|+.+
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~ 38 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFT 38 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEE
Confidence 368999999993 579999999999999996543
No 487
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=69.82 E-value=9.3 Score=41.70 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=30.3
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
....+|+|.|.|-||.++|+...-+||+ |+|-|.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~-Vtild~ 199 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGAD-VTILDL 199 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCe-eEEEec
Confidence 4456899999999999999999999999 788886
No 488
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=69.79 E-value=5.6 Score=42.03 Aligned_cols=33 Identities=18% Similarity=0.017 Sum_probs=28.1
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006848 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
.-++|+|.|.|.||..+|..|++.|..|+.++-
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r 36 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 347899999999999999999999998665543
No 489
>PRK08177 short chain dehydrogenase; Provisional
Probab=69.78 E-value=6.9 Score=38.44 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=25.8
Q ss_pred cEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006848 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 417 krVaIQG-fGNVG~~aA~~L~e~GAkVVaVS 446 (629)
++|+|.| .|.+|+.+|+.|.+.|++|+.++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~ 32 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEe
Confidence 5788887 79999999999999999976654
No 490
>PRK07454 short chain dehydrogenase; Provisional
Probab=69.77 E-value=7.5 Score=38.38 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=27.6
Q ss_pred CCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
++++++|.|. |.+|+.+++.|.+.|++|+. .++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~-~~r 38 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLAL-VAR 38 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 4678999985 99999999999999999655 455
No 491
>PRK07236 hypothetical protein; Provisional
Probab=69.73 E-value=7.4 Score=41.89 Aligned_cols=36 Identities=25% Similarity=0.173 Sum_probs=30.9
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCC
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKG 450 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVSDs~G 450 (629)
.+..+|+|+|.|-+|..+|..|.+.|.+ |.|-|..-
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 4568999999999999999999999998 57777643
No 492
>PRK06046 alanine dehydrogenase; Validated
Probab=69.67 E-value=21 Score=38.26 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=61.7
Q ss_pred CcEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccC-CeeEeCC-C
Q 006848 416 GLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA-RSKYYDE-A 492 (629)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e-~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p-~a~~i~~-~ 492 (629)
-++|.|.|.|..|++.++.|.. .+.+.|.|.|. ++ +....+.+...+ .++ .....++ +
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r-----~~-----~~~~~~~~~~~~---------~~~~~v~~~~~~~ 189 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR-----TK-----SSAEKFVERMSS---------VVGCDVTVAEDIE 189 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC-----CH-----HHHHHHHHHHHh---------hcCceEEEeCCHH
Confidence 4799999999999999988874 57888999987 33 222212211111 011 1122222 3
Q ss_pred CcccccccEEeecCCC--CccChhhHHH---HHHccCCCCCCHHHHHHHHHcCCeee
Q 006848 493 KPWNERCDVAFPCASQ--NEIDQSDAIN---LVNSGSNMPCTPEAVDVLKKANVLIA 544 (629)
Q Consensus 493 ei~~~~cDIliPcA~~--n~It~enA~~---lI~eGAN~P~TpeA~~iL~erGIl~i 544 (629)
+..+ +||++=|+.. -.++.+..+. +..=|++.|-..|.+..+.++.-+|+
T Consensus 190 ~~l~--aDiVv~aTps~~P~~~~~~l~~g~hV~~iGs~~p~~~El~~~~~~~a~vvv 244 (326)
T PRK06046 190 EACD--CDILVTTTPSRKPVVKAEWIKEGTHINAIGADAPGKQELDPEILLRAKVVV 244 (326)
T ss_pred HHhh--CCEEEEecCCCCcEecHHHcCCCCEEEecCCCCCccccCCHHHHhCCcEEE
Confidence 3443 9999988764 3344443221 33456888866665544444443444
No 493
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=69.66 E-value=14 Score=37.96 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=30.7
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 414 L~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
-.|.+|.|.| .|.||..+++++...|++|++++.+
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s 177 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGS 177 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4689999998 6999999999999999998877654
No 494
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=69.66 E-value=11 Score=41.87 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=32.4
Q ss_pred CCCCCcEEEEecC-----------------ccHHHHHHHHHHHCCCEEEEEeCC
Q 006848 412 KELKGLRCVVSGS-----------------GKIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 412 ~~L~GkrVaIQGf-----------------GNVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.+++|++|+|.|- |..|..+|+.|.+.||+|+.++..
T Consensus 181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 4699999999987 579999999999999998877754
No 495
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=69.64 E-value=7.7 Score=42.46 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=32.2
Q ss_pred cCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006848 410 MNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 410 ~g~~L~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVS 446 (629)
.+...++++|.|.|. |.+|+++++.|.+.|.+|++++
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~ 91 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVA 91 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 356778899999986 9999999999999999987765
No 496
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=69.61 E-value=15 Score=40.18 Aligned_cols=87 Identities=23% Similarity=0.351 Sum_probs=51.0
Q ss_pred CCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHhHHHHHHhhcCcccccccccCCeeEeCCCC
Q 006848 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (629)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaVSDs~G~IydpdGLD~~~L~~l~~~k~~~g~l~~~~~~~p~a~~i~~~e 493 (629)
.+++|.|.|. |-+|+|+++.|.+.|++|.+... ||+-- +....|.++.....++.-|. +...+.+.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR------~~~~~--k~~~~L~~l~~a~~~l~l~~-----aDL~d~~s 71 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVR------DPEDE--KKTEHLRKLEGAKERLKLFK-----ADLLDEGS 71 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEc------Ccchh--hhHHHHHhcccCcccceEEe-----ccccccch
Confidence 6789999985 99999999999999999876654 44421 12111333332222233331 11111122
Q ss_pred cc--cccccEEeecCCCCccChh
Q 006848 494 PW--NERCDVAFPCASQNEIDQS 514 (629)
Q Consensus 494 i~--~~~cDIliPcA~~n~It~e 514 (629)
+- -..||..|=+|..-..+..
T Consensus 72 f~~ai~gcdgVfH~Asp~~~~~~ 94 (327)
T KOG1502|consen 72 FDKAIDGCDGVFHTASPVDFDLE 94 (327)
T ss_pred HHHHHhCCCEEEEeCccCCCCCC
Confidence 21 1369999988876555443
No 497
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.60 E-value=7.9 Score=39.96 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEEeCC
Q 006848 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (629)
Q Consensus 413 ~L~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaVSDs 448 (629)
.++||+++|.|.+ -+|+.+|+.|.+.|++|+ +.+.
T Consensus 2 ~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vi-l~~r 39 (274)
T PRK08415 2 IMKGKKGLIVGVANNKSIAYGIAKACFEQGAELA-FTYL 39 (274)
T ss_pred ccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EEec
Confidence 4679999999974 699999999999999954 5565
No 498
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=69.40 E-value=12 Score=36.14 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=33.3
Q ss_pred CCCCCcEEEEecCccH---H-------HHHHHHHHHCCCEEEEEeCCCCceeC
Q 006848 412 KELKGLRCVVSGSGKI---A-------MHVLEKLIAYGAIPVSVSDAKGYLVD 454 (629)
Q Consensus 412 ~~L~GkrVaIQGfGNV---G-------~~aA~~L~e~GAkVVaVSDs~G~Iyd 454 (629)
.+++|++|+|.|+|+- + ..+.+.|.+.|+++|+-....|+.++
T Consensus 74 ~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~ 126 (167)
T TIGR01752 74 LDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFE 126 (167)
T ss_pred CCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccc
Confidence 4689999999999863 1 34556667789999999888886654
No 499
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=69.40 E-value=7.2 Score=41.30 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=29.1
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006848 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (629)
Q Consensus 414 L~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaVS 446 (629)
-.|.+|+|.|.|.||..+++.+...|++|+++.
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~ 197 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAID 197 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEc
Confidence 358999999999999999999999999976653
No 500
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=69.34 E-value=5.9 Score=41.96 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=27.0
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006848 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (629)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaVSD 447 (629)
++|+|.|.|.||..+|-.|.+.|..|..|.-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r 33 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILR 33 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 5899999999999999999999998655543
Done!