BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006852
(628 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSU|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|B Chain B, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|C Chain C, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|D Chain D, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSV|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Lactose
pdb|2WT0|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With N-Acetyl-Lactosamine
pdb|2WT1|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Lacto-N-Neo-Tetraose
pdb|2WT2|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Tri(N-Acetyl-Lactosamine)
pdb|2WT2|B Chain B, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Tri(N-Acetyl-Lactosamine)
Length = 343
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 68/182 (37%), Gaps = 57/182 (31%)
Query: 161 RSSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDK 220
R F L +P G+ G+SI + G F +DL P + LH+NVRL
Sbjct: 31 RIPFVLPLPDGVPTGASIVLEGTLTPSAVFFTLDLVTGPA------SLALHFNVRL---P 81
Query: 221 ITENPVIVQNTWTLAHDWGEEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLN 280
+ IV N+ + +WGEEVR P++
Sbjct: 82 LEGEKHIVCNSREGSSNWGEEVR-----PQE----------------------------- 107
Query: 281 NSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISG 340
FPF++ FV I + S+ Q TV+GK + F R + +SG
Sbjct: 108 ----------FPFEREKPFVLVIVIQSDTYQITVNGKPLVDFPQRL----QGITRASLSG 153
Query: 341 DL 342
DL
Sbjct: 154 DL 155
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 267 NDDKRLPTVSTRLNNSRTSK-TKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYR 325
+D K + R+N + S+ T FPF++G F I Q VD + +T F YR
Sbjct: 240 SDSKGHIACNARMNGTWGSEITVSDFPFQRGKPFTLQILTREADFQVLVDKQPLTQFQYR 299
>pdb|1X50|A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin
Domain From Human Galectin-4
Length = 164
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 279 LNNSRTSKTKRFF--PFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEV 336
LN S S+ K+ PF G F +IR G + + +G+H+ FA+R + V+ +
Sbjct: 87 LNGSWGSEEKKITHNPFGPGQFFDLSIRCGLDRFKVYANGQHLFDFAHRLSAF-QRVDTL 145
Query: 337 RISGDLKLISVLASGLPTS 355
I GD+ L V SG P+S
Sbjct: 146 EIQGDVTLSYVQISG-PSS 163
>pdb|3NV1|A Chain A, Crystal Structure Of Human Galectin-9 C-Terminal Crd
pdb|3NV2|A Chain A, Crystal Structure Of Human Galectin-9 C-Terminal Crd In
Complex With N-Acetyllactosamine
pdb|3NV3|A Chain A, Crystal Structure Of Human Galectin-9 C-Terminal Crd In
Complex With Biantennary Oligosaccharide
pdb|3NV4|A Chain A, Crystal Structure Of Human Galectin-9 C-Terminal Crd In
Complex With Sialyllactose
Length = 138
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 276 STRLNNSRTSKTK---RFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWL 332
+T+++NS S+ + R PF +G F I + ++ VDG+H+ + +R P
Sbjct: 63 NTQIDNSWGSEERSLPRKMPFVRGQSFSVWILCEAHCLKVAVDGQHLFEYYHRLRNLP-T 121
Query: 333 VNEVRISGDLKLISV 347
+N + + GD++L V
Sbjct: 122 INRLEVGGDIQLTHV 136
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 413 AVRFFVGLHKNQIVNGELWNE-----ARTYGDIQLMP-FVDYYNLITWKTLAICIFGTD- 465
+F LH N IV+G+++N Y D + P F DY+ K L + TD
Sbjct: 78 GCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDE 137
Query: 466 ----VVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYG------LINSESRPH 511
+ F++ DD +R VL L R V G +YG INS +P+
Sbjct: 138 SGNRYYDSTFMITLDD---IRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPY 190
>pdb|3I8T|A Chain A, N-Terminal Crd1 Domain Of Mouse Galectin-4 In Complex With
Lactose
Length = 164
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 286 KTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLI 345
+ K+ PF++G F V E + V+G + +R ++ +V +++ GDL+L
Sbjct: 100 EKKKSMPFQKGKHFELVFMVMPEHYKVVVNGNSFYEYGHRLPVQ--MVTHLQVDGDLELQ 157
Query: 346 SV 347
S+
Sbjct: 158 SI 159
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 33 LTSLISSNASNPLEWTHTAAAPGVQDPENSSQVISIDAITFGLFAQRNISKEEQQSLLT 91
+ L S +S P+ ++H A VQ P+N S I+ A+ G+ N ++ ++SLL+
Sbjct: 65 MLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPAL--GILPPENFVEKLRESLLS 121
>pdb|2YV8|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Galectin-8
pdb|2YXS|A Chain A, Crystal Sturcture Of N-Terminal Domain Of Human Galectin-8
With D- Lactose
Length = 164
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 292 PFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASG 351
PFK+ F I V + Q V+GKH + +R + P ++ + I G + + S+ SG
Sbjct: 103 PFKREKSFEIVIXVLKDKFQVAVNGKHTLLYGHR--IGPEKIDTLGIYGKVNIHSIGFSG 160
Query: 352 LPTS 355
P+S
Sbjct: 161 -PSS 163
>pdb|2DYC|A Chain A, Crystal Structure Of The N-Terminal Domain Of Mouse
Galectin-4
Length = 158
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 286 KTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLI 345
+ K+ PF++G F V E + V+G + +R ++ V +++ GDL+L
Sbjct: 87 EKKKSXPFQKGKHFELVFXVXPEHYKVVVNGNSFYEYGHRLPVQX--VTHLQVDGDLELQ 144
Query: 346 SV 347
S+
Sbjct: 145 SI 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,606,014
Number of Sequences: 62578
Number of extensions: 843563
Number of successful extensions: 1809
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1801
Number of HSP's gapped (non-prelim): 13
length of query: 628
length of database: 14,973,337
effective HSP length: 105
effective length of query: 523
effective length of database: 8,402,647
effective search space: 4394584381
effective search space used: 4394584381
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)