Query 006852
Match_columns 628
No_of_seqs 320 out of 2129
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 15:25:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 1E-162 3E-167 1352.3 60.7 628 1-628 1-635 (636)
2 KOG2287 Galactosyltransferases 100.0 3E-59 6.4E-64 499.4 27.2 336 287-627 4-347 (349)
3 PLN03193 beta-1,3-galactosyltr 100.0 7E-51 1.5E-55 432.9 19.2 274 327-624 103-403 (408)
4 PF01762 Galactosyl_T: Galacto 100.0 6E-45 1.3E-49 358.9 16.0 183 392-576 1-188 (195)
5 PTZ00210 UDP-GlcNAc-dependent 100.0 7.4E-36 1.6E-40 313.9 20.0 230 375-622 77-360 (382)
6 KOG2288 Galactosyltransferases 100.0 1.6E-35 3.4E-40 294.8 17.3 243 375-627 8-271 (274)
7 smart00276 GLECT Galectin. Gal 100.0 1.4E-31 3E-36 247.7 17.0 128 164-350 1-128 (128)
8 PF00337 Gal-bind_lectin: Gala 100.0 4.6E-31 9.9E-36 245.0 14.4 132 163-349 1-133 (133)
9 cd00070 GLECT Galectin/galacto 100.0 1E-30 2.2E-35 241.5 16.3 127 163-348 1-127 (127)
10 KOG3587 Galectin, galactose-bi 99.9 3.5E-26 7.6E-31 215.7 15.6 138 161-352 3-141 (143)
11 PF02434 Fringe: Fringe-like; 99.7 2.2E-16 4.7E-21 162.5 11.9 177 378-583 6-200 (252)
12 KOG2246 Galactosyltransferases 99.4 3.6E-13 7.8E-18 145.0 11.2 165 375-577 88-263 (364)
13 PLN03153 hypothetical protein; 98.9 1.9E-08 4.1E-13 111.1 14.2 179 375-586 119-313 (537)
14 KOG3708 Uncharacterized conser 97.3 0.00086 1.9E-08 74.0 9.5 199 377-619 25-245 (681)
15 PF13641 Glyco_tranf_2_3: Glyc 95.3 0.29 6.2E-06 48.3 12.8 187 379-585 2-202 (228)
16 cd02520 Glucosylceramide_synth 94.2 1.9 4.1E-05 41.9 15.4 137 411-585 30-169 (196)
17 PF01755 Glyco_transf_25: Glyc 92.9 0.95 2.1E-05 44.4 10.8 93 382-484 4-101 (200)
18 TIGR03472 HpnI hopanoid biosyn 92.7 2.6 5.6E-05 45.9 14.8 194 377-585 40-245 (373)
19 cd06434 GT2_HAS Hyaluronan syn 91.6 3.8 8.3E-05 40.4 13.4 159 411-585 28-205 (235)
20 cd04196 GT_2_like_d Subfamily 91.3 1.7 3.6E-05 42.0 10.3 170 395-575 11-189 (214)
21 cd04186 GT_2_like_c Subfamily 91.0 5.5 0.00012 36.4 13.0 86 466-586 72-158 (166)
22 cd06439 CESA_like_1 CESA_like_ 90.7 12 0.00025 37.5 16.0 190 375-585 26-221 (251)
23 cd02525 Succinoglycan_BP_ExoA 90.5 19 0.00041 35.4 17.7 163 410-586 30-201 (249)
24 cd04192 GT_2_like_e Subfamily 89.6 12 0.00026 36.3 14.8 152 412-573 29-191 (229)
25 cd06532 Glyco_transf_25 Glycos 88.7 1.8 4E-05 39.8 7.7 109 382-553 2-117 (128)
26 PF00535 Glycos_transf_2: Glyc 88.4 2.8 6.1E-05 38.0 8.8 156 381-549 3-168 (169)
27 cd04184 GT2_RfbC_Mx_like Myxoc 88.1 23 0.00049 33.8 15.3 115 460-586 75-194 (202)
28 cd06435 CESA_NdvC_like NdvC_li 86.8 7.1 0.00015 38.6 11.2 124 468-616 84-220 (236)
29 PRK11204 N-glycosyltransferase 86.8 22 0.00049 38.9 16.1 188 376-587 52-254 (420)
30 cd06433 GT_2_WfgS_like WfgS an 86.7 10 0.00022 35.8 11.8 111 460-575 67-179 (202)
31 cd06423 CESA_like CESA_like is 86.6 15 0.00034 33.0 12.6 91 461-551 71-171 (180)
32 COG1216 Predicted glycosyltran 86.2 47 0.001 34.9 17.6 193 378-585 3-212 (305)
33 PF13632 Glyco_trans_2_3: Glyc 85.9 3 6.5E-05 40.1 7.8 109 471-588 1-119 (193)
34 cd04191 Glucan_BSP_ModH Glucan 85.1 6.4 0.00014 40.8 10.2 196 382-586 3-224 (254)
35 cd04185 GT_2_like_b Subfamily 85.1 12 0.00025 36.1 11.5 92 459-582 71-163 (202)
36 PRK14583 hmsR N-glycosyltransf 84.8 18 0.0004 40.3 14.3 184 378-586 75-274 (444)
37 cd02510 pp-GalNAc-T pp-GalNAc- 83.9 46 0.001 34.6 16.2 114 460-575 75-210 (299)
38 cd06421 CESA_CelA_like CESA_Ce 83.6 4 8.6E-05 40.1 7.6 115 465-587 81-205 (234)
39 TIGR03111 glyc2_xrt_Gpos1 puta 82.5 29 0.00062 38.8 14.7 186 377-575 48-251 (439)
40 cd04195 GT2_AmsE_like GT2_AmsE 82.1 9.5 0.00021 36.5 9.5 115 461-586 73-194 (201)
41 TIGR03469 HonB hopene-associat 81.5 44 0.00096 36.5 15.5 194 377-584 39-253 (384)
42 PF13506 Glyco_transf_21: Glyc 81.0 2.7 5.9E-05 41.0 5.2 123 454-584 17-145 (175)
43 COG1215 Glycosyltransferases, 80.3 34 0.00073 37.3 14.1 195 378-588 54-260 (439)
44 cd02526 GT2_RfbF_like RfbF is 80.0 53 0.0011 32.3 14.2 113 468-586 75-197 (237)
45 cd06420 GT2_Chondriotin_Pol_N 79.9 29 0.00062 32.5 11.8 94 461-575 72-165 (182)
46 cd04187 DPM1_like_bac Bacteria 79.1 6.7 0.00014 37.2 7.2 135 411-551 29-164 (181)
47 cd06427 CESA_like_2 CESA_like_ 76.9 30 0.00065 34.6 11.5 117 460-585 76-204 (241)
48 PLN02726 dolichyl-phosphate be 73.3 74 0.0016 31.9 13.3 134 411-552 40-184 (243)
49 PF04646 DUF604: Protein of un 71.5 4.9 0.00011 41.8 4.2 47 535-584 12-60 (255)
50 cd04179 DPM_DPG-synthase_like 67.8 12 0.00025 35.3 5.7 130 412-550 29-167 (185)
51 PRK14716 bacteriophage N4 adso 66.0 1E+02 0.0022 35.5 13.7 110 468-587 158-283 (504)
52 cd06438 EpsO_like EpsO protein 64.2 26 0.00057 33.4 7.5 77 467-548 80-169 (183)
53 TIGR01556 rhamnosyltran L-rham 61.8 1.3E+02 0.0028 30.9 12.6 142 435-586 42-194 (281)
54 cd06437 CESA_CaSu_A2 Cellulose 58.2 1.9E+02 0.0042 28.4 16.0 112 461-586 80-206 (232)
55 PRK11234 nfrB bacteriophage N4 57.7 2.9E+02 0.0062 33.4 15.9 201 371-586 56-279 (727)
56 cd06442 DPM1_like DPM1_like re 53.5 86 0.0019 30.4 9.2 83 467-550 77-167 (224)
57 cd04188 DPG_synthase DPG_synth 48.1 1.2E+02 0.0027 29.3 9.4 89 411-505 30-120 (211)
58 PRK10714 undecaprenyl phosphat 47.9 1.3E+02 0.0027 32.3 10.1 135 411-552 38-175 (325)
59 KOG1594 Uncharacterized enzyme 44.0 71 0.0015 33.7 6.9 43 298-340 135-183 (305)
60 cd04190 Chitin_synth_C C-termi 39.9 21 0.00045 36.2 2.4 109 466-575 71-205 (244)
61 cd02514 GT13_GLCNAC-TI GT13_GL 39.6 1.2E+02 0.0025 33.1 8.2 75 467-549 96-174 (334)
62 TIGR03030 CelA cellulose synth 38.6 2.8E+02 0.006 33.3 11.9 128 451-587 212-352 (713)
63 PF10111 Glyco_tranf_2_2: Glyc 35.7 5.2E+02 0.011 26.8 13.4 160 410-576 33-208 (281)
64 COG3306 Glycosyltransferase in 35.0 1.1E+02 0.0024 32.0 6.9 37 382-423 5-41 (255)
65 PTZ00334 trans-sialidase; Prov 34.7 2.9E+02 0.0063 33.6 11.0 52 291-342 638-691 (780)
66 cd00761 Glyco_tranf_GTA_type G 34.0 3E+02 0.0066 23.6 13.4 73 467-575 76-150 (156)
67 PF06439 DUF1080: Domain of Un 29.6 1.4E+02 0.0031 28.3 6.3 39 288-326 119-157 (185)
68 PRK05454 glucosyltransferase M 29.2 4.7E+02 0.01 31.4 11.6 201 376-587 122-350 (691)
69 PRK11498 bcsA cellulose syntha 25.8 3.6E+02 0.0078 33.2 10.0 126 451-586 323-462 (852)
70 COG4092 Predicted glycosyltran 24.7 2E+02 0.0044 30.6 6.5 78 411-491 38-117 (346)
71 cd02522 GT_2_like_a GT_2_like_ 24.0 6.4E+02 0.014 24.1 14.6 110 461-584 65-178 (221)
72 PHA01631 hypothetical protein 21.6 2.2E+02 0.0048 28.0 5.7 64 467-553 70-134 (176)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.3e-162 Score=1352.34 Aligned_cols=628 Identities=81% Similarity=1.314 Sum_probs=603.7
Q ss_pred CccccchHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCccccccCCCCCCCCCCCCcceeeccccccccccCCC
Q 006852 1 MKKWYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLISSNASNPLEWTHTAAAPGVQDPENSSQVISIDAITFGLFAQRN 80 (628)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (628)
||||+||+||++|||+|+|||.++++|.++++++.++..|+|+||+|+.++.+|++++|+|++++++.++++|+||+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (636)
T PLN03133 1 MKKWYGGVLVVSLFMLLVLRYVLLKNPIGESYLQSVFPSNTTNPLEWLDPTNPPAVQNPENSSQVISTDTIVSSLFATRN 80 (636)
T ss_pred CceeeeeehHHHHHHHHHHHHHHhcCCCCCCCcccccccccCCchhhcccCCCccccCCCccceeeccccchhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhhhhhhHHhhhhccccccHHHHHHHHHHHHHHHHHhHHHhhccCCCCCCcccccCCcCcccccccCCCCCC
Q 006852 81 ISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMASVEEEKLGYTNRSSVRKAKEKQCPHFLNKMNTTDLD 160 (628)
Q Consensus 81 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~v~~~~~~~~~ 160 (628)
+|+|++++|++||+||+|++|||+||+|+|||+||+.||++|+++++++++++.+.++..+.++++||++|+.|++++..
T Consensus 81 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~ 160 (636)
T PLN03133 81 ISNEEQQSLLTWNHLKHLVDHAQVLPNGVEAIKEAGVAWESLMASVEEEKLGYTNESSLRKSKEKQCPYFLNKMNATELG 160 (636)
T ss_pred CchhhhhhhhHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999998887788999999999999999999
Q ss_pred CCceeeeeCCCCCCCCEEEEEEEeCCCCCceEEEcCCCCCCCCCCCCeEEEEEEEeCCCCCCCCCEEEEcCccCCCCccc
Q 006852 161 RSSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGE 240 (628)
Q Consensus 161 ~~p~~~~ip~gL~~Gs~I~V~G~p~~~~~~F~InL~~~~~~~~~~~~i~LH~NpR~~~~~~~~~~~IV~Ns~~~~~~Wg~ 240 (628)
+.+|++.|||||.+|++|||+|+|.+++++|+|||+|+..+|++++||||||||||++|+++++|+||||||+.+|+||.
T Consensus 161 ~~~~~~~iP~GL~~Gs~ItI~G~p~~~~~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~vIV~NT~~~~~~WG~ 240 (636)
T PLN03133 161 DSGYKLKIPCGLTQGSSITIIGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAAHDWGE 240 (636)
T ss_pred CCceEEecCCcCCCCCEEEEEEEeCCCCCeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCCEEEeCCCcCCCcccH
Confidence 89999999999999999999999999999999999999888888899999999999999999999999999993389999
Q ss_pred ceecCCCCCCccccccchhhhhcccCCCCCCCCcccccccc-------cCCCCCccCCCCcCCCEEEEEEEEcCceEEEE
Q 006852 241 EVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNN-------SRTSKTKRFFPFKQGHLFVATIRVGSEGIQTT 313 (628)
Q Consensus 241 EeR~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~fPF~~G~~F~i~i~~~~egf~v~ 313 (628)
||||++|+|.++++||||++||+|+|++++++.+++.+.|. +++.+..++|||++|++|++||+|+.|||||+
T Consensus 241 EERc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~ 320 (636)
T PLN03133 241 EERCPSPDPDKNKKVDDLDQCNKMVGRDDKRVLSTSLHSNGSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQMT 320 (636)
T ss_pred hhhcCCCCccccccccchhhhhhhhcccccccccccccccccccccccccccccccCCCCCCCCcEEEEEEecCCEEEEE
Confidence 99999999999999999999999999999988888765553 67788889999999999999999999999999
Q ss_pred ECCeEEEEEEeccCCCcccceEEEEcCCeeEEEeeccCCCCCCCCcccCCchhhcCCCCCCCCCeeEEEEEecCcCcHHH
Q 006852 314 VDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKR 393 (628)
Q Consensus 314 VnG~h~~sF~yR~~l~p~~v~~l~i~Gdv~l~sv~~~~LP~s~~~~~~~~~~~l~sp~~~~~~~~~LlI~V~S~~~~~~r 393 (628)
|||+|+++|+||++++||.|++|+|+|||+|+||.+.|+|++|++++++|++.+++|+++++++++|||+|+|+++||+|
T Consensus 321 VnG~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~~~~~d~e~lkAppL~~~~~~~LlI~V~Sap~nf~r 400 (636)
T PLN03133 321 VDGKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDSEHVIDLEALKSPPLSPKKPLDLFIGVFSTANNFKR 400 (636)
T ss_pred ECCeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCchhcccchHHhcCCCCCCCCceEEEEEEeCCcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999878899999999999999999
Q ss_pred HHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHHHHHHHHhhhccCCceEEE
Q 006852 394 RMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVM 473 (628)
Q Consensus 394 R~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvl 473 (628)
|+|||+|||+....++..++++|++|.+.++.++..|++|+++||||||+||+|+|+|||+||+++++|+.+|++++|+|
T Consensus 401 R~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFil 480 (636)
T PLN03133 401 RMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVM 480 (636)
T ss_pred HHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEE
Confidence 99999999997766677899999999999888999999999999999999999999999999999999999999999999
Q ss_pred EeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCeeeCCCCCCCCCCCCCcCCCccccchHHHHHHHHHh
Q 006852 474 KTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKRY 553 (628)
Q Consensus 474 K~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~~YPpYc~G~gYVLS~dla~~I~~~~ 553 (628)
|+|||+|||+++|+++|+.....+.+|+|++..+..|+|++.+|||||+++||.+.|||||+|+|||||+|+|++|+.++
T Consensus 481 K~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS~Dla~~L~~~s 560 (636)
T PLN03133 481 KTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVYKRH 560 (636)
T ss_pred EcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEcHHHHHHHHHhh
Confidence 99999999999999999887777789999999999999999999999999999999999999999999999999999886
Q ss_pred hcCccCCCCcchHHHHHHHHHhhhcCceeeccCCCcccCCCcccCcEEEEecCHHHHHHHHHHhhcCCCCCCcCC
Q 006852 554 KEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEKDERVHNDGCRDGYVVAHYQSPREMLCLWQKLKEGNAARCCGD 628 (628)
Q Consensus 554 ~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~d~rf~~~~C~~~~i~~H~~~P~~M~~lW~~l~~~~~~~C~~~ 628 (628)
++..+++|++||||||+|++++++.|+++.|.++.+++..+|..+++++|+++|++|+++|++++++++++||++
T Consensus 561 ~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~H~~sP~eM~~lW~~l~~~~~~~Cc~~ 635 (636)
T PLN03133 561 KEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVAHYQSPREMLCLWQKLQEGKRATCCGE 635 (636)
T ss_pred hhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEEecCCHHHHHHHHHHHhccCCCCccCC
Confidence 556899999999999999999999999999999999999999999999999999999999999999988999986
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-59 Score=499.43 Aligned_cols=336 Identities=35% Similarity=0.550 Sum_probs=290.0
Q ss_pred CccCCCCcCCCEEEEEEEEcCceEEEEECCeEEEEEEeccCCCcccceEEEEcCCeeEEEeeccCCCCCCCCcccCCchh
Q 006852 287 TKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEA 366 (628)
Q Consensus 287 ~~~~fPF~~G~~F~i~i~~~~egf~v~VnG~h~~sF~yR~~l~p~~v~~l~i~Gdv~l~sv~~~~LP~s~~~~~~~~~~~ 366 (628)
..+.+|+..+..|..++.+..+++++.+++++..+|.++...+.+..+....++.+..+.......+.+...-. .....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 82 (349)
T KOG2287|consen 4 KEFLFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFADFQ-KFFYL 82 (349)
T ss_pred ccccccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchhhc-cChhh
Confidence 35678999999999999999999999999999999999997677788888888888666555555555433211 12234
Q ss_pred hcCCCCCCCCC-eeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCCh-hhhhhHHHHHhhcCCeEEEe
Q 006852 367 LRSYPLSLHKP-VDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQ-IVNGELWNEARTYGDIQLMP 444 (628)
Q Consensus 367 l~sp~~~~~~~-~~LlI~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~-~~~~~L~~Ea~~ygDIi~~d 444 (628)
+..|+.++... ++|+++|.|+++|++||+|||+|||++..+++.+++++|++|.+.++ +++..|.+|++.|||||++|
T Consensus 83 l~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~d 162 (349)
T KOG2287|consen 83 LYLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVD 162 (349)
T ss_pred hcCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEe
Confidence 44555554443 89999999999999999999999999988889999999999998865 56889999999999999999
Q ss_pred ccccCCchhHHHHHHHHhhh-ccCCceEEEEeCCcceecHHHHHHHHHhc-CCCCceEEEEecCCCCCcCCCCCCeeeCC
Q 006852 445 FVDYYNLITWKTLAICIFGT-DVVSAKFVMKTDDDAFVRVDEVLTSLKRI-NVHSGLLYGLINSESRPHRNPESKWYISL 522 (628)
Q Consensus 445 f~DsY~nLt~Ktl~~~~~a~-~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~-~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~ 522 (628)
|.|+|.|+|+||++++.|+. +|++++|+||+|||+||++++|+.+|+.. .+...+|+|.+..+..|+|++.+|||||+
T Consensus 163 f~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~ 242 (349)
T KOG2287|consen 163 FEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPE 242 (349)
T ss_pred cccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCH
Confidence 99999999999999999975 59999999999999999999999999998 78889999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccCC-C---cccCCCcccC
Q 006852 523 EEWPEETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEKD-E---RVHNDGCRDG 598 (628)
Q Consensus 523 ~~yp~~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~d-~---rf~~~~C~~~ 598 (628)
++||.+.|||||+|+|||+|+++|++|+++ +.+.+++++|||+||+|+++.. |+.+...+. . ..+..+|..+
T Consensus 243 ~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~--s~~~~~~~iEDV~~g~~l~~~~--gi~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
T KOG2287|consen 243 SEYPCSVYPPYASGPGYVISGDAARRLLKA--SKHLKFFPIEDVFVGGCLAEDL--GIKPVNHPGFFEIPLSFDPCCYRD 318 (349)
T ss_pred HHCCCCCCCCcCCCceeEecHHHHHHHHHH--hcCCCccchHHHHHHHHHHHhc--CCCcccCcccccccccCCCCcccc
Confidence 999999999999999999999999999997 5689999999999999999974 555432222 1 1224556678
Q ss_pred cEEEEecCHHHHHHHHHHhhcCCCCCCcC
Q 006852 599 YVVAHYQSPREMLCLWQKLKEGNAARCCG 627 (628)
Q Consensus 599 ~i~~H~~~P~~M~~lW~~l~~~~~~~C~~ 627 (628)
+++.|.++|.+|.++|+++++..+..||+
T Consensus 319 ~~~~H~~~p~e~~~~w~~~~~~~~~~c~~ 347 (349)
T KOG2287|consen 319 LLAVHRLSPNEMIYLWKKLKDLANLKCKN 347 (349)
T ss_pred eEEEecCCHHHHHHHHHHhhccccccccc
Confidence 99999999999999999999955568875
No 3
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=7e-51 Score=432.92 Aligned_cols=274 Identities=26% Similarity=0.359 Sum_probs=225.9
Q ss_pred CCCcccceEEEEcCCeeEEEeeccCCCCCCCCcccCCchhhcCCCCCCCCCeeEEEEEecCcCcHHHHHHHHHHhccccc
Q 006852 327 TLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTE 406 (628)
Q Consensus 327 ~l~p~~v~~l~i~Gdv~l~sv~~~~LP~s~~~~~~~~~~~l~sp~~~~~~~~~LlI~V~S~~~~~~rR~aIR~TW~~~~~ 406 (628)
.||+|++++.. +.++.++|+|+++++... +.+.+++++|+|+|+|+++|++||+|||+|||+...
T Consensus 103 ~le~el~~~~~------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~ 167 (408)
T PLN03193 103 NLEMELAAARA------AQESILNGSPISEDLKKT---------QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGE 167 (408)
T ss_pred HHhHHHHHHHh------hhhhhccCCCcccccccc---------CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcc
Confidence 46777777776 566778899999886541 344478899999999999999999999999998643
Q ss_pred cC-----CCeEEEEEEEeecC--ChhhhhhHHHHHhhcCCeEEEeccccCCchhHHHHHHHHhhhccCCceEEEEeCCcc
Q 006852 407 VR-----SGTVAVRFFVGLHK--NQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDA 479 (628)
Q Consensus 407 ~~-----~~~v~v~FvvG~~~--~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDt 479 (628)
.. ...++++|++|.+. +..+++.|++|+++|||||++||+|+|.|||+||+++|+|+..+++++||||+|||+
T Consensus 168 ~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDv 247 (408)
T PLN03193 168 KRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDV 247 (408)
T ss_pred cccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence 21 35699999999987 567899999999999999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCeeeCCCCC----CCCCCCCCcCCCccccchHHHHHHHHHhhc
Q 006852 480 FVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEW----PEETYPPWAHGPGYVVSHDIGKAVYKRYKE 555 (628)
Q Consensus 480 fVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~y----p~~~YPpYc~G~gYVLS~dla~~I~~~~~~ 555 (628)
|||+++|+.+|+.......+|+|++.. .|+|++.++||++++.| +.+.|||||.|+|||||+|+|+.|+.+ .
T Consensus 248 fVnv~~L~~~L~~~~~~~rlYiG~m~~--gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n--~ 323 (408)
T PLN03193 248 HVNIATLGETLVRHRKKPRVYIGCMKS--GPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISIN--Q 323 (408)
T ss_pred eEcHHHHHHHHHhcCCCCCEEEEeccc--CccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhC--h
Confidence 999999999998765556799999975 38898878888888888 569999999999999999999999976 3
Q ss_pred CccCCCCcchHHHHHHHHHhhhcCceeeccCCCcccC---CCccc----Cc--EEEEecC-------HHHHHHHHHHhhc
Q 006852 556 GRLKMFKLEDVAMGIWIADMKKEGLQVRYEKDERVHN---DGCRD----GY--VVAHYQS-------PREMLCLWQKLKE 619 (628)
Q Consensus 556 ~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~d~rf~~---~~C~~----~~--i~~H~~~-------P~~M~~lW~~l~~ 619 (628)
..++.|++|||+||+|+. +++++|+|+.+||. +.|.- +- ++.+..+ ...|..+.+.-..
T Consensus 324 ~~L~~y~~EDV~vG~Wl~-----~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~ 398 (408)
T PLN03193 324 HVLHKYANEDVSLGSWFI-----GLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGE 398 (408)
T ss_pred hhhcccCcchhhhhhHhc-----cCCceeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCC
Confidence 478889999999999996 45789999999974 45652 22 3334333 3446666665555
Q ss_pred CCCCC
Q 006852 620 GNAAR 624 (628)
Q Consensus 620 ~~~~~ 624 (628)
+..+.
T Consensus 399 ~~~~~ 403 (408)
T PLN03193 399 GENAL 403 (408)
T ss_pred Ccccc
Confidence 54433
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=6e-45 Score=358.95 Aligned_cols=183 Identities=39% Similarity=0.647 Sum_probs=170.6
Q ss_pred HHHHHHHHHhccccccCCCeEEEEEEEeecC--ChhhhhhHHHHHhhcCCeEEEeccccCCchhHHHHHHHHhhh-ccCC
Q 006852 392 KRRMAVRRTWMQYTEVRSGTVAVRFFVGLHK--NQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGT-DVVS 468 (628)
Q Consensus 392 ~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~--~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Ktl~~~~~a~-~~~~ 468 (628)
+||++||+||++.......+++++|++|.+. +..++..|++|+++|+||||+||.|+|.|+|+||+++++|+. +|++
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 5899999999998777788999999999998 677888899999999999999999999999999999999984 5778
Q ss_pred ceEEEEeCCcceecHHHHHHHHHhc--CCCCceEEEEecCCCCCcCCCCCCeeeCCCCCCCCCCCCCcCCCccccchHHH
Q 006852 469 AKFVMKTDDDAFVRVDEVLTSLKRI--NVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIG 546 (628)
Q Consensus 469 a~fvlK~DDDtfVnv~~Ll~~L~~~--~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~~YPpYc~G~gYVLS~dla 546 (628)
++||+|+|||+|||+++|.++|... ......++|.+..+.+|.|++.+|||+|+++||.+.|||||+|+||+||+++|
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~~v 160 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSDVV 160 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEEecHHHH
Confidence 9999999999999999999999997 45677889999988899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccCCCCcchHHHHHHHHHhh
Q 006852 547 KAVYKRYKEGRLKMFKLEDVAMGIWIADMK 576 (628)
Q Consensus 547 ~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~ 576 (628)
+.|+.++ ..++++++|||++|+|+.+++
T Consensus 161 ~~i~~~~--~~~~~~~~eDv~iGi~~~~~~ 188 (195)
T PF01762_consen 161 KRIYKAS--SHTPFFPLEDVFIGILAEKLG 188 (195)
T ss_pred HHHHHHh--hcCCCCCchHHHHHHHHHHCC
Confidence 9999984 577999999999999999984
No 5
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=7.4e-36 Score=313.87 Aligned_cols=230 Identities=24% Similarity=0.306 Sum_probs=191.5
Q ss_pred CCCeeEEEEEecCcCc--HHHHHHHHHHhccccccC------CCeEEEEEEEeecCCh--hhhhhHHHHHhhcCCeEEEe
Q 006852 375 HKPVDLFIGVFSTANN--FKRRMAVRRTWMQYTEVR------SGTVAVRFFVGLHKNQ--IVNGELWNEARTYGDIQLMP 444 (628)
Q Consensus 375 ~~~~~LlI~V~S~~~~--~~rR~aIR~TW~~~~~~~------~~~v~v~FvvG~~~~~--~~~~~L~~Ea~~ygDIi~~d 444 (628)
.++..+++||.|..++ +.||++.|+||+++..+. .+.+.++|++|.+++. +++++|++|+++|||||++|
T Consensus 77 ~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilp 156 (382)
T PTZ00210 77 AQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLP 156 (382)
T ss_pred cCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEe
Confidence 6788999999999999 999999999999998776 7789999999999987 89999999999999999999
Q ss_pred c------------------cccCCchhHHHHHHHHhhhc-cCCceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEec
Q 006852 445 F------------------VDYYNLITWKTLAICIFGTD-VVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLIN 505 (628)
Q Consensus 445 f------------------~DsY~nLt~Ktl~~~~~a~~-~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~ 505 (628)
| .|+|.++|+||+++++|+.+ ||+++|+||+|||+|||++++++.|+. .+.+++|+|++.
T Consensus 157 f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~-~prr~LY~G~v~ 235 (382)
T PTZ00210 157 TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRV-MPRHGLYMGRYN 235 (382)
T ss_pred cccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhh-CCCCceEEEeeC
Confidence 9 67778899999999999855 789999999999999999999999977 456679999998
Q ss_pred CCCCCcCCCCCCeeeCCCCCCCCCCCCCcCCCccccchHHHHHHHHHhhcCcc---------------CCCCcchHHHHH
Q 006852 506 SESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKRYKEGRL---------------KMFKLEDVAMGI 570 (628)
Q Consensus 506 ~~~~p~Rd~~~Kwyvs~~~yp~~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~---------------~~~~lEDV~iGi 570 (628)
....|.|++ +||||+|+||+||+|+|+.|++.....++ -.+..||+++|.
T Consensus 236 ~~~~p~Rd~---------------~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~ 300 (382)
T PTZ00210 236 YYNRIWRRN---------------QLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGM 300 (382)
T ss_pred CCCccccCC---------------CCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHH
Confidence 877788863 49999999999999999999987432233 235679999999
Q ss_pred HHHH-hhhcCceeeccC--CCccc---CCCcc----cCcEEEEecCHHHHHHHHHHhhcCCC
Q 006852 571 WIAD-MKKEGLQVRYEK--DERVH---NDGCR----DGYVVAHYQSPREMLCLWQKLKEGNA 622 (628)
Q Consensus 571 ~l~~-l~~~gi~v~~~~--d~rf~---~~~C~----~~~i~~H~~~P~~M~~lW~~l~~~~~ 622 (628)
+++. ++..++ .|+. ..+|+ ...|. .+.|++|...+++...+...+++...
T Consensus 301 vLr~~~k~~~l--~~V~~~~c~Fhd~~~~~~~~~v~~~sVvvHhike~dYa~Lm~~F~n~~~ 360 (382)
T PTZ00210 301 ILREKVVYRNL--ISVEMGRCHFHNAGKFGVRKSVRNMSVVIHHIQEADYEMLMDYFPEGVI 360 (382)
T ss_pred HHHHhcCcCce--eeeccccccceecCCCCCccccccceEEEEecCHHHHHHHHHHhcCCCC
Confidence 9954 443332 2222 22343 23343 47899999999998888888888654
No 6
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-35 Score=294.84 Aligned_cols=243 Identities=31% Similarity=0.467 Sum_probs=208.7
Q ss_pred CCCeeEEEEEecCcCcHHHHHHHHHHhcccc-----ccCCCeEEEEEEEee-cCChhhhhhHHHHHhhcCCeEEEe-ccc
Q 006852 375 HKPVDLFIGVFSTANNFKRRMAVRRTWMQYT-----EVRSGTVAVRFFVGL-HKNQIVNGELWNEARTYGDIQLMP-FVD 447 (628)
Q Consensus 375 ~~~~~LlI~V~S~~~~~~rR~aIR~TW~~~~-----~~~~~~v~v~FvvG~-~~~~~~~~~L~~Ea~~ygDIi~~d-f~D 447 (628)
.++++++|+|.|+++..+||+.+|.|||... .-....+.++|++|. +...+...+|++|.++|+|.+.+| ..|
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 5689999999999999999999999999862 123567999999999 666888999999999999999999 999
Q ss_pred cCCchhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCeeeCCCCCC-
Q 006852 448 YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWP- 526 (628)
Q Consensus 448 sY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp- 526 (628)
.|.+|+.||++++.+|....+++|++|+|||+|||++.|...|.+......+|+|++..+ +++-++++|||-|+ |.
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg-~v~~~~~~kw~Epe--Wkf 164 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSG-PVLTQPGGKWYEPE--WKF 164 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCC-ccccCCCCcccChh--hhc
Confidence 999999999999999999999999999999999999999999998776788999999876 45566789999887 54
Q ss_pred CC--CCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccCCCcccCCCcc--cCcEEE
Q 006852 527 EE--TYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEKDERVHNDGCR--DGYVVA 602 (628)
Q Consensus 527 ~~--~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~d~rf~~~~C~--~~~i~~ 602 (628)
.+ .|-+|+.|++|+||+|++..|....+ .+..+..|||.+|-|+. |++|.+++|.|+|...|. .+.+.+
T Consensus 165 g~~g~YfrhA~G~~YvlS~dLa~yi~in~~--lL~~y~nEDVSlGaW~~-----gldV~h~dd~rlC~~~~~~~~~~~~~ 237 (274)
T KOG2288|consen 165 GDNGNYFRHATGGGYVLSKDLATYISINRQ--LLHKYANEDVSLGAWMI-----GLDVEHVDDPRLCCSTPKALAGMVCA 237 (274)
T ss_pred CcccccchhccCceEEeeHHHHHHHHHhHH--HHHhhccCCcccceeee-----eeeeeEecCCcccccchhhhccceee
Confidence 23 39999999999999999999998743 57889999999999996 458999999999877772 345544
Q ss_pred Ee---------cCHHHHHHHHHHhhcCCCCCCcC
Q 006852 603 HY---------QSPREMLCLWQKLKEGNAARCCG 627 (628)
Q Consensus 603 H~---------~~P~~M~~lW~~l~~~~~~~C~~ 627 (628)
+. .+..+|..++..-..+..+.||.
T Consensus 238 ~~~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~ 271 (274)
T KOG2288|consen 238 ASFDWKCSGLCKSEDRMLEVHKYDWEGKPATCCS 271 (274)
T ss_pred eeecccccccCchHHHHhHHHHhhccCCCcccCc
Confidence 43 34466888888777777788986
No 7
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.98 E-value=1.4e-31 Score=247.70 Aligned_cols=128 Identities=37% Similarity=0.515 Sum_probs=119.5
Q ss_pred eeeeeCCCCCCCCEEEEEEEeCCCCCceEEEcCCCCCCCCCCCCeEEEEEEEeCCCCCCCCCEEEEcCccCCCCccccee
Q 006852 164 FKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEVR 243 (628)
Q Consensus 164 ~~~~ip~gL~~Gs~I~V~G~p~~~~~~F~InL~~~~~~~~~~~~i~LH~NpR~~~~~~~~~~~IV~Ns~~~~~~Wg~EeR 243 (628)
|+.+||+||.+|++|+|+|++..++++|.|||+++ .++|+|||||||+++ +||+||+.+ |.||.|||
T Consensus 1 ~~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~------~~di~lH~n~rf~~~------~iV~Ns~~~-g~Wg~Eer 67 (128)
T smart00276 1 FTLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTG------GDDIALHFNPRFNEN------KIVCNSKLN-GSWGSEER 67 (128)
T ss_pred CcccCCCCCCCCCEEEEEEEECCCCCEEEEEeecC------CCCEEEEEeccCCCC------EEEEeCccC-CccchheE
Confidence 46789999999999999999999999999999995 358999999999986 999999998 89999999
Q ss_pred cCCCCCCccccccchhhhhcccCCCCCCCCcccccccccCCCCCccCCCCcCCCEEEEEEEEcCceEEEEECCeEEEEEE
Q 006852 244 CPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFA 323 (628)
Q Consensus 244 ~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~i~i~~~~egf~v~VnG~h~~sF~ 323 (628)
+ ..|||.+|++|+|+|.++.++|+|+|||+|+++|+
T Consensus 68 ~--------------------------------------------~~~Pf~~g~~F~l~i~~~~~~f~i~vng~~~~~f~ 103 (128)
T smart00276 68 E--------------------------------------------GGFPFQPGQPFDLTIIVQPDHFQIFVNGVHITTFP 103 (128)
T ss_pred c--------------------------------------------CCCCCCCCCEEEEEEEEcCCEEEEEECCEeEEEec
Confidence 6 57999999999999999999999999999999999
Q ss_pred eccCCCcccceEEEEcCCeeEEEeecc
Q 006852 324 YRETLEPWLVNEVRISGDLKLISVLAS 350 (628)
Q Consensus 324 yR~~l~p~~v~~l~i~Gdv~l~sv~~~ 350 (628)
||.++ ..|+.|.|.||++|++|+++
T Consensus 104 ~R~~~--~~i~~l~v~Gdv~l~~v~~~ 128 (128)
T smart00276 104 HRLPL--ESIDYLSINGDVQLTSVSFE 128 (128)
T ss_pred CCCCc--ccEeEEEEeCCEEEEEEEEC
Confidence 99865 69999999999999999863
No 8
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.97 E-value=4.6e-31 Score=245.04 Aligned_cols=132 Identities=38% Similarity=0.614 Sum_probs=121.2
Q ss_pred ceeeeeCCCCCCCCEEEEEEEeCCCCCceEEEcCCCCCCCCCCCCeEEEEEEEeCC-CCCCCCCEEEEcCccCCCCcccc
Q 006852 163 SFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLG-DKITENPVIVQNTWTLAHDWGEE 241 (628)
Q Consensus 163 p~~~~ip~gL~~Gs~I~V~G~p~~~~~~F~InL~~~~~~~~~~~~i~LH~NpR~~~-~~~~~~~~IV~Ns~~~~~~Wg~E 241 (628)
||++.||+||.+|++|+|+|++.+++++|.|||+++. .++.++|+|||||||.+ + +||+||+.+ |.||.|
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~~~f~inl~~~~--~~~~~~i~lH~~~rf~~~~------~iv~Ns~~~-g~Wg~E 71 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDAKRFSINLQTGP--NDPDDDIALHFNPRFDEQN------VIVRNSRIN-GKWGQE 71 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTSSBEEEEEEES---STTTTEEEEEEEEECTTEE------EEEEEEEET-TEE-SE
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCCCEEEEEecCCC--cCCCCCEEEEEEEEeCCCc------eEEEeceEC-CEeccc
Confidence 8999999999999999999999999999999999974 23568999999999999 6 999999998 889999
Q ss_pred eecCCCCCCccccccchhhhhcccCCCCCCCCcccccccccCCCCCccCCCCcCCCEEEEEEEEcCceEEEEECCeEEEE
Q 006852 242 VRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITS 321 (628)
Q Consensus 242 eR~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~i~i~~~~egf~v~VnG~h~~s 321 (628)
||. ..|||.+|++|+|+|+++.++|+|+|||+|+++
T Consensus 72 e~~--------------------------------------------~~~pf~~g~~F~i~I~~~~~~f~I~vng~~~~~ 107 (133)
T PF00337_consen 72 ERE--------------------------------------------SPFPFQPGQPFEIRIRVEEDGFKIYVNGKHFCS 107 (133)
T ss_dssp EEE--------------------------------------------SSTSSTTTSEEEEEEEEESSEEEEEETTEEEEE
T ss_pred eee--------------------------------------------eeeeecCCceEEEEEEEecCeeEEEECCeEEEE
Confidence 995 689999999999999999999999999999999
Q ss_pred EEeccCCCcccceEEEEcCCeeEEEeec
Q 006852 322 FAYRETLEPWLVNEVRISGDLKLISVLA 349 (628)
Q Consensus 322 F~yR~~l~p~~v~~l~i~Gdv~l~sv~~ 349 (628)
|+||.++ ..|++|.|.||++|.+|++
T Consensus 108 F~~R~~~--~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 108 FPHRLPL--SSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp EE-SSCG--GGEEEEEEEESEEEEEEEE
T ss_pred eeCcCCH--HHcCEEEEECCEEEEEEEC
Confidence 9999755 7999999999999999975
No 9
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.97 E-value=1e-30 Score=241.51 Aligned_cols=127 Identities=37% Similarity=0.561 Sum_probs=119.4
Q ss_pred ceeeeeCCCCCCCCEEEEEEEeCCCCCceEEEcCCCCCCCCCCCCeEEEEEEEeCCCCCCCCCEEEEcCccCCCCcccce
Q 006852 163 SFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEV 242 (628)
Q Consensus 163 p~~~~ip~gL~~Gs~I~V~G~p~~~~~~F~InL~~~~~~~~~~~~i~LH~NpR~~~~~~~~~~~IV~Ns~~~~~~Wg~Ee 242 (628)
||...||++|.+|++|+|+|++..++++|.|||+++ ..+|+|||||||.++ +||+||+.+ |.||.||
T Consensus 1 p~~~~l~~~l~~G~~i~i~G~~~~~~~~f~Inl~~~------~~~i~lH~n~rf~~~------~IV~Ns~~~-g~Wg~Ee 67 (127)
T cd00070 1 PYKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTG------SSDIALHFNPRFDEN------VIVRNSFLN-GNWGPEE 67 (127)
T ss_pred CcccccCCCCcCCCEEEEEEEECCCCCEEEEEEecC------CCCEEEEEeeeCCCC------EEEEcCCCC-CEecHhh
Confidence 688899999999999999999999999999999995 238999999999987 999999998 8999999
Q ss_pred ecCCCCCCccccccchhhhhcccCCCCCCCCcccccccccCCCCCccCCCCcCCCEEEEEEEEcCceEEEEECCeEEEEE
Q 006852 243 RCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSF 322 (628)
Q Consensus 243 R~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~i~i~~~~egf~v~VnG~h~~sF 322 (628)
|+ ..|||.+|++|+|+|.++.++|+|+|||+|+++|
T Consensus 68 r~--------------------------------------------~~~pf~~g~~F~l~i~~~~~~f~i~vng~~~~~F 103 (127)
T cd00070 68 RS--------------------------------------------GGFPFQPGQPFELTILVEEDKFQIFVNGQHFFSF 103 (127)
T ss_pred cc--------------------------------------------CCCCCCCCCeEEEEEEEcCCEEEEEECCEeEEEe
Confidence 97 5799999999999999999999999999999999
Q ss_pred EeccCCCcccceEEEEcCCeeEEEee
Q 006852 323 AYRETLEPWLVNEVRISGDLKLISVL 348 (628)
Q Consensus 323 ~yR~~l~p~~v~~l~i~Gdv~l~sv~ 348 (628)
+||.++ +.|+.|.|.||++|.+|.
T Consensus 104 ~~R~~~--~~i~~l~v~Gdv~i~~v~ 127 (127)
T cd00070 104 PHRLPL--ESIDYLSINGDVSLTSVE 127 (127)
T ss_pred cCcCCh--hhEEEEEEeCCEEEEEeC
Confidence 999865 799999999999999874
No 10
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.94 E-value=3.5e-26 Score=215.72 Aligned_cols=138 Identities=30% Similarity=0.419 Sum_probs=125.6
Q ss_pred CCceeeeeCCCCCCCCEEEEEEEeCCC-CCceEEEcCCCCCCCCCCCCeEEEEEEEeCCCCCCCCCEEEEcCccCCCCcc
Q 006852 161 RSSFKLQVPCGLTQGSSITIIGIPNGL-LGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWG 239 (628)
Q Consensus 161 ~~p~~~~ip~gL~~Gs~I~V~G~p~~~-~~~F~InL~~~~~~~~~~~~i~LH~NpR~~~~~~~~~~~IV~Ns~~~~~~Wg 239 (628)
.+|+...++++|.+|+.+++.|.+..+ .++|.+++..+..... +.+|+|||||||+++ .||+||+.+ |.||
T Consensus 3 ~~p~~~~~~~~l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~dia~Hfnprf~~~------~VVrNs~~~-g~Wg 74 (143)
T KOG3587|consen 3 GVPFPVPIPSGLPPGSQVTIKGLVLYGIPKRFAVNLRFGTNLDS-DSDIALHFNPRFDEK------GVVRNSLIN-GEWG 74 (143)
T ss_pred CcccccccccCcCCCcEEEEEEEEcccCCCcceeeeEeecccCC-CCcEEEEEeccCCCC------eEEEecccC-CccC
Confidence 478888899999999999999999865 6789999998766664 677999999999998 799999988 8999
Q ss_pred cceecCCCCCCccccccchhhhhcccCCCCCCCCcccccccccCCCCCccCCCCcCCCEEEEEEEEcCceEEEEECCeEE
Q 006852 240 EEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHI 319 (628)
Q Consensus 240 ~EeR~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~i~i~~~~egf~v~VnG~h~ 319 (628)
.|||. ..+||++|++|.|+|.++.+.|+|+|||.|+
T Consensus 75 ~eE~~--------------------------------------------~~~PF~~g~~F~l~I~~~~~~~~I~VNg~~f 110 (143)
T KOG3587|consen 75 LEERE--------------------------------------------GGNPFQPGQPFDLTILVEEDKFQIFVNGVHF 110 (143)
T ss_pred chhhc--------------------------------------------CCCCCCCCCeEEEEEEEccCeEEEEECCEEE
Confidence 99995 7899999999999999999999999999999
Q ss_pred EEEEeccCCCcccceEEEEcCCeeEEEeeccCC
Q 006852 320 TSFAYRETLEPWLVNEVRISGDLKLISVLASGL 352 (628)
Q Consensus 320 ~sF~yR~~l~p~~v~~l~i~Gdv~l~sv~~~~L 352 (628)
++|.||.+. ..|..|.|.||++|.+|.+.+.
T Consensus 111 ~~y~HR~p~--~~v~~l~i~Gdv~i~~i~~~~~ 141 (143)
T KOG3587|consen 111 ADYPHRIPP--SSVQTLQINGDVQITSIEFSNF 141 (143)
T ss_pred EeecCCCCC--hheeEEEEeeeEEEEEEEEEcc
Confidence 999999854 6899999999999999998753
No 11
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.67 E-value=2.2e-16 Score=162.49 Aligned_cols=177 Identities=18% Similarity=0.241 Sum_probs=96.7
Q ss_pred eeEEEEEecCcCcHHHH-HHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHHH
Q 006852 378 VDLFIGVFSTANNFKRR-MAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKT 456 (628)
Q Consensus 378 ~~LlI~V~S~~~~~~rR-~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Kt 456 (628)
-+++|+|+|++.+.+.| .+|++||++.-. . ..|+.....+..+.. + .-.+++..+....+...+++.
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~----~--~~~ifsd~~d~~l~~----~--~~~~l~~~~~~~~~~~~~~~~ 73 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCN----K--QTFIFSDAEDPSLPT----V--TGVHLVNPNCDAGHCRKTLSC 73 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSG----G--GEEEEESS--HHHHH----H--HGGGEEE-------------H
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcC----C--ceEEecCcccccccc----c--cccccccCCCcchhhHHHHHH
Confidence 47999999999877666 799999998432 1 234322222333222 2 334566666666666556666
Q ss_pred HHHHHhhhc-cCCceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCC----------CCCCeeeCCCCC
Q 006852 457 LAICIFGTD-VVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRN----------PESKWYISLEEW 525 (628)
Q Consensus 457 l~~~~~a~~-~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd----------~~~Kwyvs~~~y 525 (628)
++.+.+..+ .++++|++++|||+||++++|.++|...++.++.|+|+..... +... ..+-||.+
T Consensus 74 ~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~-~~~~~~~~~~~~~~~~~~~f~~---- 148 (252)
T PF02434_consen 74 KMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDR-PIEIIHRFNPNKSKDSGFWFAT---- 148 (252)
T ss_dssp HHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------EE-----
T ss_pred HHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCc-cceeeccccccccCcCceEeeC----
Confidence 655555332 4678999999999999999999999999999999999986543 2221 11223332
Q ss_pred CCCCCCCCcCCCccccchHHHHHHHHHhhcCcc-CC----CCcchHHHHHHHHH-hhhcCceee
Q 006852 526 PEETYPPWAHGPGYVVSHDIGKAVYKRYKEGRL-KM----FKLEDVAMGIWIAD-MKKEGLQVR 583 (628)
Q Consensus 526 p~~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~-~~----~~lEDV~iGi~l~~-l~~~gi~v~ 583 (628)
+|+||+||+.++++|......... .. -..||+.+|.|+.. + |++..
T Consensus 149 ---------GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~l---gv~lt 200 (252)
T PF02434_consen 149 ---------GGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLL---GVPLT 200 (252)
T ss_dssp ---------GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT------EE
T ss_pred ---------CCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcC---Cccee
Confidence 678999999999999654322222 12 23799999999998 5 55543
No 12
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.44 E-value=3.6e-13 Score=144.99 Aligned_cols=165 Identities=19% Similarity=0.266 Sum_probs=125.1
Q ss_pred CCCeeEEEEEecCcCcHHHH-HHHHHHhccccccCCCeEEEEEEE---eecCChhhhhhHHHHHhhcCCeEEEeccccCC
Q 006852 375 HKPVDLFIGVFSTANNFKRR-MAVRRTWMQYTEVRSGTVAVRFFV---GLHKNQIVNGELWNEARTYGDIQLMPFVDYYN 450 (628)
Q Consensus 375 ~~~~~LlI~V~S~~~~~~rR-~aIR~TW~~~~~~~~~~v~v~Fvv---G~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~ 450 (628)
..+.+++++|+|.+.+...| .++-+||++.-. +..|+- ..... .+. .|..+..|+|+
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~------~~~f~s~~~s~~~~------------~f~-~v~~~~~~g~~ 148 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD------KGIFFSPTLSKDDS------------RFP-TVYYNLPDGYR 148 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccC------cceecCccCCCCCC------------cCc-eeeccCCcchH
Confidence 57899999999998777777 599999997422 234443 22211 121 24788999999
Q ss_pred chhHHHHHHHHhhh-c-cCCceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCeeeCCCCCCCC
Q 006852 451 LITWKTLAICIFGT-D-VVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEE 528 (628)
Q Consensus 451 nLt~Ktl~~~~~a~-~-~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~ 528 (628)
++-.||..++++.. + -.+++|++|+|||||+.++||...|...++.+..|+|..... .-. .+ |.+
T Consensus 149 ~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~---~~~-~~--y~~------- 215 (364)
T KOG2246|consen 149 SLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKS---YFQ-NG--YSS------- 215 (364)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccc---ccc-cc--ccc-------
Confidence 99999999999875 3 368999999999999999999999999999999999986531 111 12 444
Q ss_pred CCCCCcCCCccccchHHHHHHHHHhh--cCccCCC---CcchHHHHHHHHHhhh
Q 006852 529 TYPPWAHGPGYVVSHDIGKAVYKRYK--EGRLKMF---KLEDVAMGIWIADMKK 577 (628)
Q Consensus 529 ~YPpYc~G~gYVLS~dla~~I~~~~~--~~~~~~~---~lEDV~iGi~l~~l~~ 577 (628)
+|+||++|+.+.+.+++... ...++.- ..||+.||.|++.++.
T Consensus 216 ------g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV 263 (364)
T KOG2246|consen 216 ------GGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGV 263 (364)
T ss_pred ------CCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCC
Confidence 89999999999999876642 1112222 3899999999999853
No 13
>PLN03153 hypothetical protein; Provisional
Probab=98.89 E-value=1.9e-08 Score=111.12 Aligned_cols=179 Identities=15% Similarity=0.185 Sum_probs=108.3
Q ss_pred CCCeeEEEEEecCcCcHHHH-HHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEecccc----C
Q 006852 375 HKPVDLFIGVFSTANNFKRR-MAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDY----Y 449 (628)
Q Consensus 375 ~~~~~LlI~V~S~~~~~~rR-~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~Ds----Y 449 (628)
..--.++++|.+..+...+| ..|+.+|..... =..+|+.....+...... --- +.+. .|+ |
T Consensus 119 t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~-----rg~v~ld~~~~~~~~~~~-------~P~-i~is-~d~s~f~y 184 (537)
T PLN03153 119 LSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM-----RGHVWLEEQVSPEEGDDS-------LPP-IMVS-EDTSRFRY 184 (537)
T ss_pred CccccEEEEEEEchhhhhhhhhhhhhhcCcccc-----eeEEEecccCCCCCCcCC-------CCC-EEeC-CCcccccc
Confidence 34457888999887777555 789999986321 123444433222111100 000 1111 111 3
Q ss_pred Cch---hHHHHHH---HHhh--hccCCceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCeeeC
Q 006852 450 NLI---TWKTLAI---CIFG--TDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYIS 521 (628)
Q Consensus 450 ~nL---t~Ktl~~---~~~a--~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs 521 (628)
.|- .. .+.+ ...+ ...++++|++++|||||+.+++|...|...++.+..|+|......... ..+.
T Consensus 185 ~~~~Gh~s-a~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn----~~f~-- 257 (537)
T PLN03153 185 TNPTGHPS-GLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSAN----SYFS-- 257 (537)
T ss_pred cCCCCcHH-HHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccc----cccc--
Confidence 331 11 2211 2222 336899999999999999999999999999999999999875432110 1110
Q ss_pred CCCCCCCCCCCCc-CCCccccchHHHHHHHHHhhcCc--cCCCCcchHHHHHHHHHhhhcCceeeccC
Q 006852 522 LEEWPEETYPPWA-HGPGYVVSHDIGKAVYKRYKEGR--LKMFKLEDVAMGIWIADMKKEGLQVRYEK 586 (628)
Q Consensus 522 ~~~yp~~~YPpYc-~G~gYVLS~dla~~I~~~~~~~~--~~~~~lEDV~iGi~l~~l~~~gi~v~~~~ 586 (628)
| .|+ +|+||+||+.+++.|........ .+...-+|.-+|.|+.++ |+++....
T Consensus 258 --------~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~el---GV~LT~~~ 313 (537)
T PLN03153 258 --------H-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITEL---GVPLSREP 313 (537)
T ss_pred --------c-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHc---CCCceecC
Confidence 1 133 78999999999999887643211 122346888999999987 66654443
No 14
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00086 Score=73.96 Aligned_cols=199 Identities=17% Similarity=0.201 Sum_probs=125.0
Q ss_pred CeeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHHH
Q 006852 377 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKT 456 (628)
Q Consensus 377 ~~~LlI~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Kt 456 (628)
+=+|+++|+|.. .---+|-+|-+..= =++.||.+.+.-. .|.-++..+-.|+.-..|+
T Consensus 25 RErl~~aVmte~---tlA~a~NrT~ahhv------prv~~F~~~~~i~-------------~~~a~~~~vs~~d~r~~~~ 82 (681)
T KOG3708|consen 25 RERLMAAVMTES---TLALAINRTLAHHV------PRVHLFADSSRID-------------NDLAQLTNVSPYDLRGQKT 82 (681)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhhc------ceeEEeecccccc-------------ccHhhccccCccccCcccc
Confidence 335667777722 44456777766521 2566777765421 2333444555565556676
Q ss_pred HHH-HHhhhc--cCCceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCeeeCCCCCCCCCCCCC
Q 006852 457 LAI-CIFGTD--VVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPW 533 (628)
Q Consensus 457 l~~-~~~a~~--~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~~YPpY 533 (628)
..+ +.+..+ .-+++|++-+-||||||...|++.+...+-..++|+|.-.. +-++.
T Consensus 83 ~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~------~gs~r---------------- 140 (681)
T KOG3708|consen 83 HSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAE------DGSGR---------------- 140 (681)
T ss_pred HHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhh------CccCc----------------
Confidence 643 355322 34899999999999999999999999999899999993221 11111
Q ss_pred c-CCCccccchHHHHHHHHHhhcC-ccCCCCcchHHHHHHHHHhhhcCceeeccCC--------C--c---cc-CCCc--
Q 006852 534 A-HGPGYVVSHDIGKAVYKRYKEG-RLKMFKLEDVAMGIWIADMKKEGLQVRYEKD--------E--R---VH-NDGC-- 595 (628)
Q Consensus 534 c-~G~gYVLS~dla~~I~~~~~~~-~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~d--------~--r---f~-~~~C-- 595 (628)
| .|.||+||+.++.++-...+.. ..-.-.=.|+.+|.|+......|....+..- . + +. ..+.
T Consensus 141 C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~e~~~s~a 220 (681)
T KOG3708|consen 141 CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIPEWEGSPA 220 (681)
T ss_pred cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccchhhcCChH
Confidence 4 5889999999999998764321 2223345789999999886543433222111 1 1 11 0111
Q ss_pred ccCcEEEE-ecCHHHHHHHHHHhhc
Q 006852 596 RDGYVVAH-YQSPREMLCLWQKLKE 619 (628)
Q Consensus 596 ~~~~i~~H-~~~P~~M~~lW~~l~~ 619 (628)
..+..++| -++|.+|..+.+.+..
T Consensus 221 Fr~A~tv~pv~~p~d~yrLH~yfsr 245 (681)
T KOG3708|consen 221 FRSALTVHPVLSPADMYRLHKYFSR 245 (681)
T ss_pred HhhhhccCccCCHHHHHHHHHHHHH
Confidence 12466777 6889999999887654
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.30 E-value=0.29 Score=48.34 Aligned_cols=187 Identities=13% Similarity=0.113 Sum_probs=90.7
Q ss_pred eEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCe--EEEeccccCCch--hH
Q 006852 379 DLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDI--QLMPFVDYYNLI--TW 454 (628)
Q Consensus 379 ~LlI~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDI--i~~df~DsY~nL--t~ 454 (628)
.+.|+|.+....-.-++.|+.--.+. . .++.++++...+ +....+.+++-.+.|... ..+... .|. +.
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~-~---~~~~v~vvd~~~-~~~~~~~~~~~~~~~~~~~v~vi~~~---~~~g~~~ 73 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQD-Y---PRLEVVVVDDGS-DDETAEILRALAARYPRVRVRVIRRP---RNPGPGG 73 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSH-H---HTEEEEEEEE-S-SS-GCTTHHHHHHTTGG-GEEEEE-------HHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCC-C---CCeEEEEEECCC-ChHHHHHHHHHHHHcCCCceEEeecC---CCCCcch
Confidence 46677777665566667777666542 1 345665555333 333445566556667653 222221 222 23
Q ss_pred HHHHHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhc-CCCCceEEEEecCCCCCcCCC--------CCCeeeCCCCC
Q 006852 455 KTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRI-NVHSGLLYGLINSESRPHRNP--------ESKWYISLEEW 525 (628)
Q Consensus 455 Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~-~~~~~~~~G~v~~~~~p~Rd~--------~~Kwyvs~~~y 525 (628)
|.-+. .++......+|++.+|||+.+..+.|...+... .+.-..+.|.+.... .+.. ...|+......
T Consensus 74 k~~a~-n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 150 (228)
T PF13641_consen 74 KARAL-NEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDN--DRNWLTRLQDLFFARWHLRFRSG 150 (228)
T ss_dssp HHHHH-HHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETT--CCCEEEE-TT--S-EETTTS-TT
T ss_pred HHHHH-HHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecC--CCCHHHHHHHHHHhhhhhhhhhh
Confidence 44332 344333469999999999999988888877776 344455555553321 1100 00111100000
Q ss_pred CCCCCC-CCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeecc
Q 006852 526 PEETYP-PWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYE 585 (628)
Q Consensus 526 p~~~YP-pYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~ 585 (628)
...+. .++.|++.++.+++++++..- . . ....||..++.-+.+. |.++.|.
T Consensus 151 -~~~~~~~~~~G~~~~~rr~~~~~~g~f-d-~---~~~~eD~~l~~r~~~~---G~~~~~~ 202 (228)
T PF13641_consen 151 -RRALGVAFLSGSGMLFRRSALEEVGGF-D-P---FILGEDFDLCLRLRAA---GWRIVYA 202 (228)
T ss_dssp --B----S-B--TEEEEEHHHHHHH-S----S---SSSSHHHHHHHHHHHT---T--EEEE
T ss_pred -hcccceeeccCcEEEEEHHHHHHhCCC-C-C---CCcccHHHHHHHHHHC---CCcEEEE
Confidence 11111 446899999999999988642 1 1 3445999999888775 6666554
No 16
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=94.24 E-value=1.9 Score=41.90 Aligned_cols=137 Identities=18% Similarity=0.123 Sum_probs=79.9
Q ss_pred eEEEEEEEeecCChhhhhhHHHHHhhcCC--eEEEeccccCCchhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHH
Q 006852 411 TVAVRFFVGLHKNQIVNGELWNEARTYGD--IQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLT 488 (628)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygD--Ii~~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~ 488 (628)
.+.++++...+.+.. .+.+++-.+.|.. +......... ....|.-. +..+......+|++.+|+|+.+..+.|..
T Consensus 30 ~~eiivVdd~s~d~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 106 (196)
T cd02520 30 KYEILFCVQDEDDPA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVNN-LIKGYEEARYDILVISDSDISVPPDYLRR 106 (196)
T ss_pred CeEEEEEeCCCcchH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhHHHH
Confidence 366767666555433 2334444455553 3222221111 12234322 23344445789999999999998888877
Q ss_pred HHHhcC-CCCceEEEEecCCCCCcCCCCCCeeeCCCCCCCCCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHH
Q 006852 489 SLKRIN-VHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVA 567 (628)
Q Consensus 489 ~L~~~~-~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~ 567 (628)
.+.... +.-....|. ++.|++.++.+++.+++---. .......||..
T Consensus 107 l~~~~~~~~~~~v~~~-----------------------------~~~g~~~~~r~~~~~~~ggf~---~~~~~~~eD~~ 154 (196)
T cd02520 107 MVAPLMDPGVGLVTCL-----------------------------CAFGKSMALRREVLDAIGGFE---AFADYLAEDYF 154 (196)
T ss_pred HHHHhhCCCCCeEEee-----------------------------cccCceeeeEHHHHHhccChH---HHhHHHHHHHH
Confidence 777642 222233332 568999999999999875321 11223369999
Q ss_pred HHHHHHHhhhcCceeecc
Q 006852 568 MGIWIADMKKEGLQVRYE 585 (628)
Q Consensus 568 iGi~l~~l~~~gi~v~~~ 585 (628)
++.-+.+. |..+.+.
T Consensus 155 l~~rl~~~---G~~i~~~ 169 (196)
T cd02520 155 LGKLIWRL---GYRVVLS 169 (196)
T ss_pred HHHHHHHc---CCeEEEc
Confidence 98887665 5555443
No 17
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=92.92 E-value=0.95 Score=44.42 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=50.3
Q ss_pred EEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEe-----ccccCCchhHHH
Q 006852 382 IGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMP-----FVDYYNLITWKT 456 (628)
Q Consensus 382 I~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~d-----f~DsY~nLt~Kt 456 (628)
|.|.|-+...+||+.+.+..... .+.+.||-|-.....-...+ ...|..-.... +.-.--.-.+-.
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~------~~~~e~~~Avdg~~l~~~~~---~~~~~~~~~~~~~~~~lt~gEiGC~lSH 74 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL------GINFEFFDAVDGRDLSEDEL---FRRYDPELFKKRYGRPLTPGEIGCALSH 74 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCceEEEEeecccccchHHH---HHHhhhhhhhccccccCCcceEeehhhH
Confidence 56788899999999998877653 45677887765542211111 11121111110 000111112223
Q ss_pred HHHHHhhhccCCceEEEEeCCcceecHH
Q 006852 457 LAICIFGTDVVSAKFVMKTDDDAFVRVD 484 (628)
Q Consensus 457 l~~~~~a~~~~~a~fvlK~DDDtfVnv~ 484 (628)
+..++-+.. -+.+|.+-..||+.++.+
T Consensus 75 ~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 75 IKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred HHHHHHHHH-cCCCeEEEEecccccccc
Confidence 333333222 257899999999999854
No 18
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=92.72 E-value=2.6 Score=45.92 Aligned_cols=194 Identities=13% Similarity=0.038 Sum_probs=100.4
Q ss_pred CeeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCC--eEEEeccccCCchhH
Q 006852 377 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGD--IQLMPFVDYYNLITW 454 (628)
Q Consensus 377 ~~~LlI~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygD--Ii~~df~DsY~nLt~ 454 (628)
.+.+-|+|.+......-.+.++. ..+... ..+.++|+...+.+... +.+++=.+.|.+ |..+.-.+ -.....
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~S-l~~q~Y---p~~EIivvdd~s~D~t~-~iv~~~~~~~p~~~i~~v~~~~-~~G~~~ 113 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLAS-FCRQDY---PGFQMLFGVQDPDDPAL-AVVRRLRADFPDADIDLVIDAR-RHGPNR 113 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHH-HHhcCC---CCeEEEEEeCCCCCcHH-HHHHHHHHhCCCCceEEEECCC-CCCCCh
Confidence 44565666655444444455653 322221 23667776655544322 223333455666 33331111 122234
Q ss_pred HHHHHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCC-CCceEEEEecCCCCCcCCCCCC---eeeCCCCCCC---
Q 006852 455 KTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINV-HSGLLYGLINSESRPHRNPESK---WYISLEEWPE--- 527 (628)
Q Consensus 455 Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~-~~~~~~G~v~~~~~p~Rd~~~K---wyvs~~~yp~--- 527 (628)
|.-+... +....+.+|++.+|+|+.+..+.|...+..... .-....|... ..+......+ .++....+|.
T Consensus 114 K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~ 190 (373)
T TIGR03472 114 KVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYR--GRPVPGFWSRLGAMGINHNFLPSVMV 190 (373)
T ss_pred HHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEecccc--CCCCCCHHHHHHHHHhhhhhhHHHHH
Confidence 6544433 234457899999999999999888887776542 2233333211 1111110000 0111111110
Q ss_pred ---CCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeecc
Q 006852 528 ---ETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYE 585 (628)
Q Consensus 528 ---~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~ 585 (628)
..-+.+|.|.++++.+++.+.+---. .....-.||+.+|.-+.+. |..+.+.
T Consensus 191 ~~~~~~~~~~~G~~~a~RR~~l~~iGGf~---~~~~~~~ED~~l~~~i~~~---G~~v~~~ 245 (373)
T TIGR03472 191 ARALGRARFCFGATMALRRATLEAIGGLA---ALAHHLADDYWLGELVRAL---GLRVVLA 245 (373)
T ss_pred HHhccCCccccChhhheeHHHHHHcCChH---HhcccchHHHHHHHHHHHc---CCeEEec
Confidence 01135688999999999999886321 1112235999999998765 5555443
No 19
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=91.63 E-value=3.8 Score=40.39 Aligned_cols=159 Identities=16% Similarity=0.112 Sum_probs=81.2
Q ss_pred eEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHHHH
Q 006852 411 TVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSL 490 (628)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L 490 (628)
...++++...+.++ ....+ ++...+..+.+.. .+. .-|.-+ +..+....+.+|++.+|+|+.+..+.|...+
T Consensus 28 ~~eiivvdd~s~d~-~~~~l-~~~~~~~~~~v~~-~~~----~g~~~a-~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 28 PLEIIVVTDGDDEP-YLSIL-SQTVKYGGIFVIT-VPH----PGKRRA-LAEGIRHVTTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred CCEEEEEeCCCChH-HHHHH-HhhccCCcEEEEe-cCC----CChHHH-HHHHHHHhCCCEEEEECCCceeChhHHHHHH
Confidence 34555554444332 22223 3455666666554 221 223332 2233334478999999999999999988888
Q ss_pred HhcCC-CCceEEEEecCCCCCcCCCCCCee------eCC-------CCCCCCCCCCCcCCCccccchHHHHHHHHHhh--
Q 006852 491 KRINV-HSGLLYGLINSESRPHRNPESKWY------ISL-------EEWPEETYPPWAHGPGYVVSHDIGKAVYKRYK-- 554 (628)
Q Consensus 491 ~~~~~-~~~~~~G~v~~~~~p~Rd~~~Kwy------vs~-------~~yp~~~YPpYc~G~gYVLS~dla~~I~~~~~-- 554 (628)
+.... .-....|.... .....+.|. ... ...... --..+.|.+.++.+++++.+.-...
T Consensus 100 ~~~~~~~v~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~rr~~l~~~~~~~~~~ 174 (235)
T cd06434 100 KPFEDPKVGGVGTNQRI----LRPRDSKWSFLAAEYLERRNEEIRAAMSYDG-GVPCLSGRTAAYRTEILKDFLFLEEFT 174 (235)
T ss_pred HhccCCCEeEEcCceEe----ecCcccHHHHHHHHHHHHHHHHHHHHHhhCC-CEEEccCcHHHHHHHHHhhhhhHHHhh
Confidence 87642 21222232211 111011110 000 000001 0123578888999999887643211
Q ss_pred ---cCccCCCCcchHHHHHHHHHhhhcCceeecc
Q 006852 555 ---EGRLKMFKLEDVAMGIWIADMKKEGLQVRYE 585 (628)
Q Consensus 555 ---~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~ 585 (628)
-...+...-||..++.-+.+. |..+.|.
T Consensus 175 ~~~~~~~~~~~~eD~~l~~~~~~~---g~~~~~~ 205 (235)
T cd06434 175 NETFMGRRLNAGDDRFLTRYVLSH---GYKTVYQ 205 (235)
T ss_pred hhhhcCCCCCcCchHHHHHHHHHC---CCeEEEe
Confidence 011234567999998877665 5555443
No 20
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.34 E-value=1.7 Score=41.95 Aligned_cols=170 Identities=9% Similarity=-0.033 Sum_probs=85.2
Q ss_pred HHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcC-CeEEEeccccCCchhHHHHHHHHhhhccCCceEEE
Q 006852 395 MAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYG-DIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVM 473 (628)
Q Consensus 395 ~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~yg-DIi~~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvl 473 (628)
..|.++..+-.......+.++++-..+.+. ..+.+++-.++|+ .+.......... .. ..+..+....+.+|++
T Consensus 11 ~~l~~~l~sl~~q~~~~~eiiVvddgS~d~-t~~~~~~~~~~~~~~~~~~~~~~~~G-~~----~~~n~g~~~~~g~~v~ 84 (214)
T cd04196 11 KYLREQLDSILAQTYKNDELIISDDGSTDG-TVEIIKEYIDKDPFIIILIRNGKNLG-VA----RNFESLLQAADGDYVF 84 (214)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCCC-cHHHHHHHHhcCCceEEEEeCCCCcc-HH----HHHHHHHHhCCCCEEE
Confidence 334444444222112246666665444432 2333444444554 333333333221 11 1222334445789999
Q ss_pred EeCCcceecHHHHHHHHHh-cC-CCCceEEEEecC--CCCCcCCCCCCeeeC----CCCCCCCCCCCCcCCCccccchHH
Q 006852 474 KTDDDAFVRVDEVLTSLKR-IN-VHSGLLYGLINS--ESRPHRNPESKWYIS----LEEWPEETYPPWAHGPGYVVSHDI 545 (628)
Q Consensus 474 K~DDDtfVnv~~Ll~~L~~-~~-~~~~~~~G~v~~--~~~p~Rd~~~Kwyvs----~~~yp~~~YPpYc~G~gYVLS~dl 545 (628)
..|+|.++..+.|...++. .. +...++.|.... ....... ...+... ...+.......++.|+++++.+++
T Consensus 85 ~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 163 (214)
T cd04196 85 FCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIG-ESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNREL 163 (214)
T ss_pred EECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcc-cccccccccCCccCHHHHHHhCccCCceeeEEHHH
Confidence 9999999998888888776 22 333344454321 1111110 0111000 001112223456689999999999
Q ss_pred HHHHHHHhhcCccCCCCcchHHHHHHHHHh
Q 006852 546 GKAVYKRYKEGRLKMFKLEDVAMGIWIADM 575 (628)
Q Consensus 546 a~~I~~~~~~~~~~~~~lEDV~iGi~l~~l 575 (628)
++++..-. ......||.++...+...
T Consensus 164 ~~~~~~~~----~~~~~~~D~~~~~~~~~~ 189 (214)
T cd04196 164 LELALPFP----DADVIMHDWWLALLASAF 189 (214)
T ss_pred HHhhcccc----ccccccchHHHHHHHHHc
Confidence 99886531 111468999887776653
No 21
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.01 E-value=5.5 Score=36.36 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=56.5
Q ss_pred cCCceEEEEeCCcceecHHHHHHHHHhcCCC-CceEEEEecCCCCCcCCCCCCeeeCCCCCCCCCCCCCcCCCccccchH
Q 006852 466 VVSAKFVMKTDDDAFVRVDEVLTSLKRINVH-SGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHD 544 (628)
Q Consensus 466 ~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~-~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~~YPpYc~G~gYVLS~d 544 (628)
..+.+|++.+|||.++..+.+...++..... .-..++.. +.|++.+++++
T Consensus 72 ~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~ 122 (166)
T cd04186 72 EAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-----------------------------VSGAFLLVRRE 122 (166)
T ss_pred hCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-----------------------------CceeeEeeeHH
Confidence 3489999999999999988888777753322 22222211 68999999999
Q ss_pred HHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccC
Q 006852 545 IGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEK 586 (628)
Q Consensus 545 la~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~ 586 (628)
+++.+..- ..... ...||..+..-+... |.++.+..
T Consensus 123 ~~~~~~~~--~~~~~-~~~eD~~~~~~~~~~---g~~i~~~~ 158 (166)
T cd04186 123 VFEEVGGF--DEDFF-LYYEDVDLCLRARLA---GYRVLYVP 158 (166)
T ss_pred HHHHcCCC--Chhhh-ccccHHHHHHHHHHc---CCeEEEcc
Confidence 98876421 11111 257999887766544 55554443
No 22
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=90.65 E-value=12 Score=37.48 Aligned_cols=190 Identities=13% Similarity=0.058 Sum_probs=90.6
Q ss_pred CCCeeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhH
Q 006852 375 HKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITW 454 (628)
Q Consensus 375 ~~~~~LlI~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~ 454 (628)
...+.+-|+|.+.-....-...|+.-..+.. ....+.++++.-.+.+ ...+.+.+-.+. .+......+.. -
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~--~~~~~eiivvdd~s~d-~t~~~~~~~~~~--~v~~i~~~~~~----g 96 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDY--PRDRLEIIVVSDGSTD-GTAEIAREYADK--GVKLLRFPERR----G 96 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcC--CCCcEEEEEEECCCCc-cHHHHHHHHhhC--cEEEEEcCCCC----C
Confidence 3444566666665544444566666665421 1122455444433332 222222222222 34443322221 1
Q ss_pred HHHHHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCC-CCceEEEEecCCCCCcCCCCCCeeeCCC----CCC-CC
Q 006852 455 KTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINV-HSGLLYGLINSESRPHRNPESKWYISLE----EWP-EE 528 (628)
Q Consensus 455 Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~-~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~----~yp-~~ 528 (628)
|.- .+..+......+|++.+|+|+++..+.|.+.+..... .-....|................+.... .+. ..
T Consensus 97 ~~~-a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (251)
T cd06439 97 KAA-ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRL 175 (251)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhc
Confidence 322 2233333345699999999999997777777776542 3345555553211110000011110000 000 11
Q ss_pred CCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeecc
Q 006852 529 TYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYE 585 (628)
Q Consensus 529 ~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~ 585 (628)
.....+.|+++.+.+++.. .. ......||..++..+... |..+.+.
T Consensus 176 ~~~~~~~g~~~~~rr~~~~----~~----~~~~~~eD~~l~~~~~~~---G~~~~~~ 221 (251)
T cd06439 176 GSTVGANGAIYAIRRELFR----PL----PADTINDDFVLPLRIARQ---GYRVVYE 221 (251)
T ss_pred CCeeeecchHHHhHHHHhc----CC----CcccchhHHHHHHHHHHc---CCeEEec
Confidence 2234467788878877665 11 112336999998877654 5555443
No 23
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=90.47 E-value=19 Score=35.44 Aligned_cols=163 Identities=10% Similarity=0.033 Sum_probs=81.1
Q ss_pred CeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHHH
Q 006852 410 GTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTS 489 (628)
Q Consensus 410 ~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~ 489 (628)
..+.++.+-+.+.+ .....+++..+.+..+....-... . +. ..+..+....+.+|++.+|||..+..+.|...
T Consensus 30 ~~~evivvd~~s~d-~~~~~~~~~~~~~~~v~~i~~~~~----~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~ 102 (249)
T cd02525 30 DLIEIIVVDGGSTD-GTREIVQEYAAKDPRIRLIDNPKR----I-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYILEL 102 (249)
T ss_pred CccEEEEEeCCCCc-cHHHHHHHHHhcCCeEEEEeCCCC----C-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHHHH
Confidence 34566655554443 233444444444444444432221 1 11 23444444457899999999999998877777
Q ss_pred HHhcCCC-CceEEEEecCC-CCCcCC-----CCCCeeeCCCCCCCCCC--CCCcCCCccccchHHHHHHHHHhhcCccCC
Q 006852 490 LKRINVH-SGLLYGLINSE-SRPHRN-----PESKWYISLEEWPEETY--PPWAHGPGYVVSHDIGKAVYKRYKEGRLKM 560 (628)
Q Consensus 490 L~~~~~~-~~~~~G~v~~~-~~p~Rd-----~~~Kwyvs~~~yp~~~Y--PpYc~G~gYVLS~dla~~I~~~~~~~~~~~ 560 (628)
+...... .....|..... ..+... ....+......+..... =.++.|++.++++++.+++.-. ...+
T Consensus 103 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~ 178 (249)
T cd02525 103 VEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGF----DESL 178 (249)
T ss_pred HHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCC----Cccc
Confidence 7654332 23344443221 111000 00000000000111000 1145788888999998876421 1223
Q ss_pred CCcchHHHHHHHHHhhhcCceeeccC
Q 006852 561 FKLEDVAMGIWIADMKKEGLQVRYEK 586 (628)
Q Consensus 561 ~~lEDV~iGi~l~~l~~~gi~v~~~~ 586 (628)
...||..++.-+.+. |..+.+..
T Consensus 179 ~~~eD~~l~~r~~~~---G~~~~~~~ 201 (249)
T cd02525 179 VRNEDAELNYRLRKA---GYKIWLSP 201 (249)
T ss_pred CccchhHHHHHHHHc---CcEEEEcC
Confidence 457999998766554 55555443
No 24
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.65 E-value=12 Score=36.31 Aligned_cols=152 Identities=14% Similarity=0.025 Sum_probs=78.5
Q ss_pred EEEEEEEeecCChhhhhhHHHHHhh--cCCeEEEeccccCCchhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHHH
Q 006852 412 VAVRFFVGLHKNQIVNGELWNEART--YGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTS 489 (628)
Q Consensus 412 v~v~FvvG~~~~~~~~~~L~~Ea~~--ygDIi~~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~ 489 (628)
+.++.+-..+.+. ..+.++ +... +..+..+.... -.+. -|.. .+.++......+|++.+|+|..+..+.|...
T Consensus 29 ~eiivvdd~s~d~-t~~~~~-~~~~~~~~~v~~~~~~~-~~~~-g~~~-a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l 103 (229)
T cd04192 29 FEVILVDDHSTDG-TVQILE-FAAAKPNFQLKILNNSR-VSIS-GKKN-ALTTAIKAAKGDWIVTTDADCVVPSNWLLTF 103 (229)
T ss_pred eEEEEEcCCCCcC-hHHHHH-HHHhCCCcceEEeeccC-cccc-hhHH-HHHHHHHHhcCCEEEEECCCcccCHHHHHHH
Confidence 5555554444332 223333 2222 33455555444 2222 2222 2344444557899999999999998888777
Q ss_pred HHhcCC-CCceEEEEecCCCCCcCCCCCC-----eeeCC---CCCCCCCCCCCcCCCccccchHHHHHHHHHhhcCccCC
Q 006852 490 LKRINV-HSGLLYGLINSESRPHRNPESK-----WYISL---EEWPEETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKM 560 (628)
Q Consensus 490 L~~~~~-~~~~~~G~v~~~~~p~Rd~~~K-----wyvs~---~~yp~~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~ 560 (628)
+..... ....+.|..... .+ ...... +.... .......+|..+.|+++++++++.+++---. ....
T Consensus 104 ~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~---~~~~ 178 (229)
T cd04192 104 VAFIQKEQIGLVAGPVIYF-KG-KSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFE---GNDH 178 (229)
T ss_pred HHHhhcCCCcEEeeeeeec-CC-ccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCc---cccc
Confidence 775432 334555654322 01 000000 00000 0111234566678999999999988885421 1223
Q ss_pred CCcchHHHHHHHH
Q 006852 561 FKLEDVAMGIWIA 573 (628)
Q Consensus 561 ~~lEDV~iGi~l~ 573 (628)
...||..++.-+.
T Consensus 179 ~~~eD~~~~~~~~ 191 (229)
T cd04192 179 IASGDDELLLAKV 191 (229)
T ss_pred cccCCHHHHHHHH
Confidence 4567777765443
No 25
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=88.71 E-value=1.8 Score=39.84 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=65.4
Q ss_pred EEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHH------
Q 006852 382 IGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWK------ 455 (628)
Q Consensus 382 I~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~K------ 455 (628)
|.|.+-+...+||..+++..... .+.+.||-|-.........+...... .........++.-
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~------~~~~~~~~Avd~~~~~~~~~~~~~~~------~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL------GLDFEFFDAVDGKDLSEEELAALYDA------LFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCCeEEEeccccccCCHHHHHHHhHH------HhhhhcCCCCChhhHHHHH
Confidence 46788888999999999865542 35677777765542222222222111 0000011122221
Q ss_pred -HHHHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCeeeCCCCCCCCCCCCCc
Q 006852 456 -TLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWA 534 (628)
Q Consensus 456 -tl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~~YPpYc 534 (628)
.+..++-+.. .+.++.+-..||+.+..+
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------- 98 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC--------------------------------------------------
Confidence 2222222221 256899999999999887
Q ss_pred CCCccccchHHHHHHHHHh
Q 006852 535 HGPGYVVSHDIGKAVYKRY 553 (628)
Q Consensus 535 ~G~gYVLS~dla~~I~~~~ 553 (628)
+..||+||+..|+++++..
T Consensus 99 ~~~~Y~vs~~~A~~ll~~~ 117 (128)
T cd06532 99 GTAGYLVSRKGAKKLLAAL 117 (128)
T ss_pred CceEEEeCHHHHHHHHHhC
Confidence 5668999999999999974
No 26
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=88.41 E-value=2.8 Score=37.97 Aligned_cols=156 Identities=11% Similarity=0.108 Sum_probs=75.3
Q ss_pred EEEEecCcCcHHHH-HHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHHHHHH
Q 006852 381 FIGVFSTANNFKRR-MAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAI 459 (628)
Q Consensus 381 lI~V~S~~~~~~rR-~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Ktl~~ 459 (628)
+|.+.-.+....+- ..+++. . .....+.++-..+ ++.....+++-.+....+..+...+.. .+. ..
T Consensus 3 vip~~n~~~~l~~~l~sl~~q--~-----~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~----~~ 69 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQ--T-----DPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL-GFS----AA 69 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHH--S-----GCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS-HHH----HH
T ss_pred EEEeeCCHHHHHHHHHHHhhc--c-----CCCEEEEEecccc-ccccccccccccccccccccccccccc-ccc----cc
Confidence 33344444444444 346665 1 2245565555444 333334344444435566666655543 211 22
Q ss_pred HHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCC-CCceEEEEecCCCCCcCCCCCC-----eeeC---CCCCCCCCC
Q 006852 460 CIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINV-HSGLLYGLINSESRPHRNPESK-----WYIS---LEEWPEETY 530 (628)
Q Consensus 460 ~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~-~~~~~~G~v~~~~~p~Rd~~~K-----wyvs---~~~yp~~~Y 530 (628)
+..+.+....+|++.+|||.++..+.|...++.... .....+|.........+..... +... ........-
T Consensus 70 ~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (169)
T PF00535_consen 70 RNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWK 149 (169)
T ss_dssp HHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTT
T ss_pred ccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCC
Confidence 233333345669999999999988766666555433 3345555543221111110000 0000 011112334
Q ss_pred CCCcCCCccccchHHHHHH
Q 006852 531 PPWAHGPGYVVSHDIGKAV 549 (628)
Q Consensus 531 PpYc~G~gYVLS~dla~~I 549 (628)
-.++.|++.++++++.+++
T Consensus 150 ~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 150 ISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp SSEESSSCEEEEEHHHHHC
T ss_pred cccccccEEEEEHHHHHhh
Confidence 4677899999999998775
No 27
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=88.05 E-value=23 Score=33.85 Aligned_cols=115 Identities=12% Similarity=0.124 Sum_probs=62.1
Q ss_pred HHhhhccCCceEEEEeCCcceecHHHHHHHHHhc-C-CCCceEEEEecCCCCCcCCCCCCeeeCC--CCCCCCC-CCCCc
Q 006852 460 CIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRI-N-VHSGLLYGLINSESRPHRNPESKWYISL--EEWPEET-YPPWA 534 (628)
Q Consensus 460 ~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~-~-~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~--~~yp~~~-YPpYc 534 (628)
+..+......+|++..|+|..+..+.|...++.. . +...+++|..... +..+.++.+. ..|.... +..-+
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKI-----DEGGKRSEPFFKPDWSPDLLLSQNY 149 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhc-----cCCCCEeccccCCCCCHHHhhhcCC
Confidence 3344444567999999999999988888888765 2 3334555543211 1111111111 1112111 11112
Q ss_pred CCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccC
Q 006852 535 HGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEK 586 (628)
Q Consensus 535 ~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~ 586 (628)
.|.+-++++++++++.-- ...+...||.-++.-+.+. |..+.|..
T Consensus 150 ~~~~~~~~r~~~~~iggf----~~~~~~~eD~~l~~rl~~~---g~~~~~~~ 194 (202)
T cd04184 150 IGHLLVYRRSLVRQVGGF----REGFEGAQDYDLVLRVSEH---TDRIAHIP 194 (202)
T ss_pred ccceEeEEHHHHHHhCCC----CcCcccchhHHHHHHHHhc---cceEEEcc
Confidence 355567888887776521 1123457999877766544 55555544
No 28
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=86.79 E-value=7.1 Score=38.62 Aligned_cols=124 Identities=16% Similarity=0.169 Sum_probs=69.8
Q ss_pred CceEEEEeCCcceecHHHHHHHHHhcCCCC-ceEEEEecCCCCCcCCCCCCeeeCC--CCCC----------CCCCCCCc
Q 006852 468 SAKFVMKTDDDAFVRVDEVLTSLKRINVHS-GLLYGLINSESRPHRNPESKWYISL--EEWP----------EETYPPWA 534 (628)
Q Consensus 468 ~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~-~~~~G~v~~~~~p~Rd~~~Kwyvs~--~~yp----------~~~YPpYc 534 (628)
+.+|++.+|+|+.+..+.|...+....... .++.|.. ..++....++... ..|. ...=-.++
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQ-----DYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQ 158 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCc-----cccCCCccHHHHHHhHHHHHHHHHHhccccccCceEE
Confidence 479999999999999999988887754222 2222211 1111111111100 0000 00001256
Q ss_pred CCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccCCCcccCCCcccCcEEEEecCHHHHHHHH
Q 006852 535 HGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEKDERVHNDGCRDGYVVAHYQSPREMLCLW 614 (628)
Q Consensus 535 ~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~d~rf~~~~C~~~~i~~H~~~P~~M~~lW 614 (628)
.|++.++++++...+--- . . .+..||+-++.=+.+. |..+.|.++ ...|.+.|..+..++
T Consensus 159 ~g~~~~~rr~~~~~iGgf-~-~---~~~~eD~dl~~r~~~~---G~~~~~~~~------------~~~~~~~~~~~~~~~ 218 (236)
T cd06435 159 HGTMCLIRRSALDDVGGW-D-E---WCITEDSELGLRMHEA---GYIGVYVAQ------------SYGHGLIPDTFEAFK 218 (236)
T ss_pred ecceEEEEHHHHHHhCCC-C-C---ccccchHHHHHHHHHC---CcEEEEcch------------hhccCcCcccHHHHH
Confidence 788899999999887432 1 1 1247999998877665 556655542 123445666665555
Q ss_pred HH
Q 006852 615 QK 616 (628)
Q Consensus 615 ~~ 616 (628)
++
T Consensus 219 ~q 220 (236)
T cd06435 219 KQ 220 (236)
T ss_pred HH
Confidence 43
No 29
>PRK11204 N-glycosyltransferase; Provisional
Probab=86.78 E-value=22 Score=38.93 Aligned_cols=188 Identities=13% Similarity=0.050 Sum_probs=96.8
Q ss_pred CCeeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHH
Q 006852 376 KPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWK 455 (628)
Q Consensus 376 ~~~~LlI~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~K 455 (628)
..+.+-|+|.+......-++.++.--.+ ......+ +++....++...+.+++..++|..+..++..+ |.. |
T Consensus 52 ~~p~vsViIp~yne~~~i~~~l~sl~~q----~yp~~ei-iVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~---n~G-k 122 (420)
T PRK11204 52 EYPGVSILVPCYNEGENVEETISHLLAL----RYPNYEV-IAINDGSSDNTGEILDRLAAQIPRLRVIHLAE---NQG-K 122 (420)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHhC----CCCCeEE-EEEECCCCccHHHHHHHHHHhCCcEEEEEcCC---CCC-H
Confidence 3445666666654433333333332211 1123444 33433333344455555566677676655333 322 4
Q ss_pred HHHHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcC--CCCceEEEEecCCCCCcCCCCCCeeeC--CCCCCC----
Q 006852 456 TLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRIN--VHSGLLYGLINSESRPHRNPESKWYIS--LEEWPE---- 527 (628)
Q Consensus 456 tl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~--~~~~~~~G~v~~~~~p~Rd~~~Kwyvs--~~~yp~---- 527 (628)
.- .+..+.+..+.+|++..|+|+.+..+.|...++... +.-....|... .++.. .|.-. ..+|..
T Consensus 123 a~-aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~-----~~~~~-~~~~~~~~~~~~~~~~~ 195 (420)
T PRK11204 123 AN-ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPR-----IRNRS-TLLGRIQVGEFSSIIGL 195 (420)
T ss_pred HH-HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCce-----eccch-hHHHHHHHHHHHHhhhH
Confidence 32 234444445789999999999999998888777652 22222223211 11111 01000 000100
Q ss_pred -----C--CCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccCC
Q 006852 528 -----E--TYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEKD 587 (628)
Q Consensus 528 -----~--~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~d 587 (628)
. ..+..++|.+.++.+++++++--- . ...-.||+-++.-+.+. |..+.|..+
T Consensus 196 ~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~----~-~~~~~ED~~l~~rl~~~---G~~i~~~p~ 254 (420)
T PRK11204 196 IKRAQRVYGRVFTVSGVITAFRKSALHEVGYW----S-TDMITEDIDISWKLQLR---GWDIRYEPR 254 (420)
T ss_pred HHHHHHHhCCceEecceeeeeeHHHHHHhCCC----C-CCcccchHHHHHHHHHc---CCeEEeccc
Confidence 0 012234788899999998876432 1 11236999998887654 667766554
No 30
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.68 E-value=10 Score=35.79 Aligned_cols=111 Identities=7% Similarity=-0.077 Sum_probs=63.8
Q ss_pred HHhhhccCCceEEEEeCCcceecHHHHHHHHHhc--CCCCceEEEEecCCCCCcCCCCCCeeeCCCCCCCCCCCCCcCCC
Q 006852 460 CIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRI--NVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGP 537 (628)
Q Consensus 460 ~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~--~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~~YPpYc~G~ 537 (628)
+..+....+.+|++.+|+|.++..+.+...+... .+...+++|........... ...+..............++.|+
T Consensus 67 ~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 145 (202)
T cd06433 67 MNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV-IGRRRPPPFLDKFLLYGMPICHQ 145 (202)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc-ccCCCCcchhhhHHhhcCcccCc
Confidence 3444445578999999999999988888877433 23445666765321111111 11111111122233345667888
Q ss_pred ccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHh
Q 006852 538 GYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADM 575 (628)
Q Consensus 538 gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l 575 (628)
+.++++++.+.+.. + ...+...||..+..-+.+.
T Consensus 146 ~~~~~~~~~~~~~~-f---~~~~~~~~D~~~~~r~~~~ 179 (202)
T cd06433 146 ATFFRRSLFEKYGG-F---DESYRIAADYDLLLRLLLA 179 (202)
T ss_pred ceEEEHHHHHHhCC-C---chhhCchhhHHHHHHHHHc
Confidence 99999999888753 1 1112345888766655554
No 31
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=86.63 E-value=15 Score=32.96 Aligned_cols=91 Identities=10% Similarity=-0.005 Sum_probs=48.9
Q ss_pred HhhhccCCceEEEEeCCcceecHHHHHHHHHhcCC--CCceEEEEecCCCCC---cCCCCC-C---eeeCCCCC-CCCCC
Q 006852 461 IFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINV--HSGLLYGLINSESRP---HRNPES-K---WYISLEEW-PEETY 530 (628)
Q Consensus 461 ~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~--~~~~~~G~v~~~~~p---~Rd~~~-K---wyvs~~~y-p~~~Y 530 (628)
.++.+..+.+|++.+|+|.++..+.|...+..... .-..+.|........ ...... + ++.....+ ....+
T Consensus 71 n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
T cd06423 71 NAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGG 150 (180)
T ss_pred HHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecc
Confidence 34444458999999999999987777766444332 223344443321111 110000 0 11000000 11234
Q ss_pred CCCcCCCccccchHHHHHHHH
Q 006852 531 PPWAHGPGYVVSHDIGKAVYK 551 (628)
Q Consensus 531 PpYc~G~gYVLS~dla~~I~~ 551 (628)
...+.|.+++++++++.++-.
T Consensus 151 ~~~~~g~~~~~~~~~~~~~gg 171 (180)
T cd06423 151 VLVLSGAFGAFRREALREVGG 171 (180)
T ss_pred eeecCchHHHHHHHHHHHhCC
Confidence 566789999999999887653
No 32
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=86.18 E-value=47 Score=34.93 Aligned_cols=193 Identities=12% Similarity=0.027 Sum_probs=99.7
Q ss_pred eeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHHHH
Q 006852 378 VDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTL 457 (628)
Q Consensus 378 ~~LlI~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Ktl 457 (628)
+.+-++|.|-...-...+.++..=.+.. ....++ ++-........+.+.+.. +.++..+...++.---.- .-
T Consensus 3 ~~i~~iiv~yn~~~~l~~~l~~l~~~~~----~~~~iv-~vDn~s~d~~~~~~~~~~--~~~v~~i~~~~NlG~agg-~n 74 (305)
T COG1216 3 PKISIIIVTYNRGEDLVECLASLAAQTY----PDDVIV-VVDNGSTDGSLEALKARF--FPNVRLIENGENLGFAGG-FN 74 (305)
T ss_pred cceEEEEEecCCHHHHHHHHHHHhcCCC----CCcEEE-EccCCCCCCCHHHHHhhc--CCcEEEEEcCCCccchhh-hh
Confidence 3455566665555555555655444421 112222 333222222222222222 788888776664321000 00
Q ss_pred HHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCCCC-ceEEEEecCCC----CCcCC------CCCCe-eeCCCCC
Q 006852 458 AICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHS-GLLYGLINSES----RPHRN------PESKW-YISLEEW 525 (628)
Q Consensus 458 ~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~-~~~~G~v~~~~----~p~Rd------~~~Kw-yvs~~~y 525 (628)
.++++|.... .+|++-.++|+.+..+.|.+.|+...... ..+.|...... .+.+. ....| .....+.
T Consensus 75 ~g~~~a~~~~-~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (305)
T COG1216 75 RGIKYALAKG-DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEI 153 (305)
T ss_pred HHHHHHhcCC-CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccc
Confidence 2333433221 11999999999999999998888765432 33334433221 01111 01122 2222222
Q ss_pred CC-----CCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeecc
Q 006852 526 PE-----ETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYE 585 (628)
Q Consensus 526 p~-----~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~ 585 (628)
+. ...-.++.|++.++++++.+++--- . .--+..+||+-.+.=+++. |.++.+.
T Consensus 154 ~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~-d--e~~F~y~eD~D~~~R~~~~---G~~i~~~ 212 (305)
T COG1216 154 APDLSSYLEVVASLSGACLLIRREAFEKVGGF-D--ERFFIYYEDVDLCLRARKA---GYKIYYV 212 (305)
T ss_pred cccccchhhhhhhcceeeeEEcHHHHHHhCCC-C--cccceeehHHHHHHHHHHc---CCeEEEe
Confidence 21 1122257999999999999999762 1 2224579999998888776 5554443
No 33
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=85.91 E-value=3 Score=40.15 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=66.7
Q ss_pred EEEEeCCcceecHHHHHHHHHhcC-CCCceEEEEecCCCCCcCCCCCCeeeCCCC------C---CCCCCCCCcCCCccc
Q 006852 471 FVMKTDDDAFVRVDEVLTSLKRIN-VHSGLLYGLINSESRPHRNPESKWYISLEE------W---PEETYPPWAHGPGYV 540 (628)
Q Consensus 471 fvlK~DDDtfVnv~~Ll~~L~~~~-~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~------y---p~~~YPpYc~G~gYV 540 (628)
||+.+|+|+.+..+.+...+.... +.-...-|.+... +..+.-.++...... . .....+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR--NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec--CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999998888877655 2223344444321 111111122211110 0 123457778999999
Q ss_pred cchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccCCC
Q 006852 541 VSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEKDE 588 (628)
Q Consensus 541 LS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~d~ 588 (628)
+++++++++.-. .-...-.||..++.-+.+. |..+.|..+.
T Consensus 79 ~r~~~l~~vg~~----~~~~~~~ED~~l~~~l~~~---G~~~~~~~~~ 119 (193)
T PF13632_consen 79 FRREALREVGGF----DDPFSIGEDMDLGFRLRRA---GYRIVYVPDA 119 (193)
T ss_pred eeHHHHHHhCcc----cccccccchHHHHHHHHHC---CCEEEEeccc
Confidence 999999988532 1124456999999888655 6666666543
No 34
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=85.12 E-value=6.4 Score=40.77 Aligned_cols=196 Identities=11% Similarity=0.091 Sum_probs=100.0
Q ss_pred EEEecCcCcHH-HHHHHHHHhccccccC-CCeEEEEEEEeecCChhhhhh----HHHHHhhcCCeEEEeccccCCchhHH
Q 006852 382 IGVFSTANNFK-RRMAVRRTWMQYTEVR-SGTVAVRFFVGLHKNQIVNGE----LWNEARTYGDIQLMPFVDYYNLITWK 455 (628)
Q Consensus 382 I~V~S~~~~~~-rR~aIR~TW~~~~~~~-~~~v~v~FvvG~~~~~~~~~~----L~~Ea~~ygDIi~~df~DsY~nLt~K 455 (628)
|+|.+--...+ -...++.......... ..++.+ |++-.+.++++... +.+=.+++..-+.+-+...-.|.-.|
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~K 81 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRK 81 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCcc
Confidence 45555544444 5566766654210000 124666 77765555433211 11111234443344444444555567
Q ss_pred HHHHHHhhhcc-CCceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCCCC---Cee-------e----
Q 006852 456 TLAICIFGTDV-VSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPES---KWY-------I---- 520 (628)
Q Consensus 456 tl~~~~~a~~~-~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~---Kwy-------v---- 520 (628)
+-.+-.+.... .+.+|++-.|.|+.+..+.|.+.+.......+ +|-+...... .+..+ ++. .
T Consensus 82 ag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~-~n~~~~~~~~~~~~~~~~~~~~~ 158 (254)
T cd04191 82 AGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKL-IGAETLFARLQQFANRLYGPVFG 158 (254)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCcee-ECCCCHHHHHHHHHHHHHHHHHH
Confidence 66554443322 46799999999999999999988876532221 3333221111 11111 100 0
Q ss_pred -CCCCCCCCCCCCCcCCCccccchHHHHHHHHHhh---cCcc-CCCCcchHHHHHHHHHhhhcCceeeccC
Q 006852 521 -SLEEWPEETYPPWAHGPGYVVSHDIGKAVYKRYK---EGRL-KMFKLEDVAMGIWIADMKKEGLQVRYEK 586 (628)
Q Consensus 521 -s~~~yp~~~YPpYc~G~gYVLS~dla~~I~~~~~---~~~~-~~~~lEDV~iGi~l~~l~~~gi~v~~~~ 586 (628)
....|... -.+|.|...++.++++..+..... .... ...-.||..+|+.+... |-.+.|..
T Consensus 159 ~~~~~~~~~--~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~---G~ri~~~~ 224 (254)
T cd04191 159 RGLAAWQGG--EGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRA---GWEVRLAP 224 (254)
T ss_pred HHHHHhcCC--ccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHc---CCEEEEcc
Confidence 00011111 135679999999999877632100 0011 11347999999998765 55565554
No 35
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.07 E-value=12 Score=36.14 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=56.8
Q ss_pred HHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcC-CCCceEEEEecCCCCCcCCCCCCeeeCCCCCCCCCCCCCcCCC
Q 006852 459 ICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRIN-VHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGP 537 (628)
Q Consensus 459 ~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~-~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~~YPpYc~G~ 537 (628)
.+.++. ....+|++..|||..+..+.+...+.... +.-..+.|..... .+ .+.
T Consensus 71 ~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~~------------------~~~ 124 (202)
T cd04185 71 GVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDP-------DG------------------SFV 124 (202)
T ss_pred HHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcC-------CC------------------ceE
Confidence 345554 45789999999999999877776666554 2223333332211 11 345
Q ss_pred ccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCcee
Q 006852 538 GYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQV 582 (628)
Q Consensus 538 gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v 582 (628)
|.++.+++++.+--. .... ....||+.++.-+.+. |..+
T Consensus 125 ~~~~~~~~~~~~g~~--~~~~-~~~~eD~~~~~r~~~~---G~~i 163 (202)
T cd04185 125 GVLISRRVVEKIGLP--DKEF-FIWGDDTEYTLRASKA---GPGI 163 (202)
T ss_pred EEEEeHHHHHHhCCC--Chhh-hccchHHHHHHHHHHc---CCcE
Confidence 678999988876421 1111 2346999998888765 5555
No 36
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=84.77 E-value=18 Score=40.31 Aligned_cols=184 Identities=13% Similarity=0.047 Sum_probs=97.0
Q ss_pred eeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHHHH
Q 006852 378 VDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTL 457 (628)
Q Consensus 378 ~~LlI~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Ktl 457 (628)
+.+-|+|.+......-++.|+.- .+.. -.+..+.++-..+ ++...+.+++..+++..+....... |.. |.
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sl-l~q~---yp~~eIivVdDgs-~D~t~~~~~~~~~~~~~v~vv~~~~---n~G-ka- 144 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAA-LAQT---YTNIEVIAINDGS-SDDTAQVLDALLAEDPRLRVIHLAH---NQG-KA- 144 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHH-HcCC---CCCeEEEEEECCC-CccHHHHHHHHHHhCCCEEEEEeCC---CCC-HH-
Confidence 45666666654444444445432 2211 1245554443333 3334445555566677665544322 222 43
Q ss_pred HHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcC--CCCceEEEEecCCCCCcCCCC---CCeeeCCCCCCC-----
Q 006852 458 AICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRIN--VHSGLLYGLINSESRPHRNPE---SKWYISLEEWPE----- 527 (628)
Q Consensus 458 ~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~--~~~~~~~G~v~~~~~p~Rd~~---~Kwyvs~~~yp~----- 527 (628)
..++.+....+.+|++..|+|+.+..+.+...+.... +.-....|... .++.. ++... .+|..
T Consensus 145 ~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~-----~~~~~~~~~~~~~--~e~~~~~~~~ 217 (444)
T PRK14583 145 IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPR-----IRTRSTLIGRVQV--GEFSSIIGLI 217 (444)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccce-----ecCCCcchhhHHH--HHHHHHHHHH
Confidence 2345555556789999999999999998888776542 22222333221 11111 11110 01100
Q ss_pred ----CCC--CCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccC
Q 006852 528 ----ETY--PPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEK 586 (628)
Q Consensus 528 ----~~Y--PpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~ 586 (628)
..| +..++|.+.++.+++++++--.. +..-.||.-+|.-+... |..+.|..
T Consensus 218 ~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~-----~~~i~ED~dl~~rl~~~---G~~i~~~p 274 (444)
T PRK14583 218 KRTQRVYGQVFTVSGVVAAFRRRALADVGYWS-----PDMITEDIDISWKLQLK---HWSVFFEP 274 (444)
T ss_pred HHHHHHhCCceEecCceeEEEHHHHHHcCCCC-----CCcccccHHHHHHHHHc---CCeEEEee
Confidence 011 12347888999999988874321 11236999999988765 55665554
No 37
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=83.94 E-value=46 Score=34.61 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=60.3
Q ss_pred HHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCCCCc-eEEEEecCCCC------CcCC---------CCCCeeeCCC
Q 006852 460 CIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSG-LLYGLINSESR------PHRN---------PESKWYISLE 523 (628)
Q Consensus 460 ~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~-~~~G~v~~~~~------p~Rd---------~~~Kwyvs~~ 523 (628)
...+......+|++..|+|+.+..+-|...+........ +..|.+..... .... -...|.....
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 334444457899999999999987776666665432222 22232211000 0000 0001110000
Q ss_pred -----CCC-CCCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHh
Q 006852 524 -----EWP-EETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADM 575 (628)
Q Consensus 524 -----~yp-~~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l 575 (628)
..+ ....-+++.|+++++++++...+--- ...+.....||+-+..=+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgf--De~~~~~~~ED~Dl~~R~~~~ 210 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGY--DEGMDIWGGENLELSFKVWQC 210 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCC--CCcccccCchhHHHHHHHHHc
Confidence 001 12334577899999999999888532 112333346999776655544
No 38
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=83.62 E-value=4 Score=40.08 Aligned_cols=115 Identities=16% Similarity=0.107 Sum_probs=65.1
Q ss_pred ccCCceEEEEeCCcceecHHHHHHHHHhcCC-CC-ceEEEEecCC-CCC----cCCC--CCCeeeCCCCCC-CCCCCCCc
Q 006852 465 DVVSAKFVMKTDDDAFVRVDEVLTSLKRINV-HS-GLLYGLINSE-SRP----HRNP--ESKWYISLEEWP-EETYPPWA 534 (628)
Q Consensus 465 ~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~-~~-~~~~G~v~~~-~~p----~Rd~--~~Kwyvs~~~yp-~~~YPpYc 534 (628)
+..+.+|++.+|+|+++..+.|...+..... .+ ....|..... ... .+.. ....+....... ......++
T Consensus 81 ~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (234)
T cd06421 81 AHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFC 160 (234)
T ss_pred HhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcee
Confidence 3347899999999999999888888776543 22 2333332111 000 0000 000000000000 01224567
Q ss_pred CCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccCC
Q 006852 535 HGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEKD 587 (628)
Q Consensus 535 ~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~d 587 (628)
.|++.++++++++++..- . .....||..++.-+.+. |..+.|..+
T Consensus 161 ~g~~~~~r~~~~~~ig~~----~-~~~~~eD~~l~~r~~~~---g~~i~~~~~ 205 (234)
T cd06421 161 CGSGAVVRREALDEIGGF----P-TDSVTEDLATSLRLHAK---GWRSVYVPE 205 (234)
T ss_pred cCceeeEeHHHHHHhCCC----C-ccceeccHHHHHHHHHc---CceEEEecC
Confidence 899999999999887532 1 12347999999877665 556666553
No 39
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=82.54 E-value=29 Score=38.80 Aligned_cols=186 Identities=10% Similarity=0.006 Sum_probs=90.9
Q ss_pred CeeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHHH
Q 006852 377 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKT 456 (628)
Q Consensus 377 ~~~LlI~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Kt 456 (628)
.+.+-|+|.+--..-.-++.|+.--.+. .....+.+..+-..+.++ ..+.+++-.+.+..+...- .+. + .-|.
T Consensus 48 ~P~vsVIIP~yNe~~~l~~~l~sl~~q~--yp~~~~eIiVVDd~StD~-T~~il~~~~~~~~~v~v~~-~~~--~-~Gka 120 (439)
T TIGR03111 48 LPDITIIIPVYNSEDTLFNCIESIYNQT--YPIELIDIILANNQSTDD-SFQVFCRAQNEFPGLSLRY-MNS--D-QGKA 120 (439)
T ss_pred CCCEEEEEEeCCChHHHHHHHHHHHhcC--CCCCCeEEEEEECCCChh-HHHHHHHHHHhCCCeEEEE-eCC--C-CCHH
Confidence 3455555555443344445555443331 112234443343333332 2222333334455543322 221 1 2233
Q ss_pred HHHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCC--CCceEEEEecCCCCCcCCCCC--CeeeCCC---CCC---
Q 006852 457 LAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINV--HSGLLYGLINSESRPHRNPES--KWYISLE---EWP--- 526 (628)
Q Consensus 457 l~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~--~~~~~~G~v~~~~~p~Rd~~~--Kwyvs~~---~yp--- 526 (628)
- .+.++.+..+.+|++.+|+|..+..+.|.+.++.... .-....|.+...........+ .+.+... +|.
T Consensus 121 ~-AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 199 (439)
T TIGR03111 121 K-ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAF 199 (439)
T ss_pred H-HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHH
Confidence 2 3345555567899999999999999998888876532 223344655432111100001 1111110 110
Q ss_pred --------CCCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHh
Q 006852 527 --------EETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADM 575 (628)
Q Consensus 527 --------~~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l 575 (628)
...-+..++|++.++.++++.++.-- .... -.||.-++.-++.+
T Consensus 200 l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf----~~~~-i~ED~~l~~rl~~~ 251 (439)
T TIGR03111 200 LAGRNFESQVNSLFTLSGAFSAFRRETILKTQLY----NSET-VGEDTDMTFQIREL 251 (439)
T ss_pred HhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCC----CCCC-cCccHHHHHHHHHh
Confidence 01122345788899999998776421 1112 37999998776543
No 40
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=82.10 E-value=9.5 Score=36.54 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=61.1
Q ss_pred HhhhccCCceEEEEeCCcceecHHHHHHHHHhcC--CCCceEEEEecCCCCCcCCCCCCeeeCCC-----CCCCCCCCCC
Q 006852 461 IFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRIN--VHSGLLYGLINSESRPHRNPESKWYISLE-----EWPEETYPPW 533 (628)
Q Consensus 461 ~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~--~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~-----~yp~~~YPpY 533 (628)
..+....+.+|++..|+|.++..+.|...++... +...++.|.........+....+. .+.. .+....- +
T Consensus 73 N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~- 149 (201)
T cd04195 73 NEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTSHDDILKFARRRS-P- 149 (201)
T ss_pred HHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc-CCCCHHHHHHHhccCC-C-
Confidence 3444445789999999999999888887777643 333455554432110000000000 0000 0000111 1
Q ss_pred cCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccC
Q 006852 534 AHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEK 586 (628)
Q Consensus 534 c~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~ 586 (628)
..|++.++.++++.++..- . .....||..+...+... |..+.+..
T Consensus 150 ~~~~~~~~rr~~~~~~g~~----~-~~~~~eD~~~~~r~~~~---g~~~~~~~ 194 (201)
T cd04195 150 FNHPTVMFRKSKVLAVGGY----Q-DLPLVEDYALWARMLAN---GARFANLP 194 (201)
T ss_pred CCChHHhhhHHHHHHcCCc----C-CCCCchHHHHHHHHHHc---CCceeccc
Confidence 2466778887776665321 1 12568999988887654 55555544
No 41
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=81.54 E-value=44 Score=36.50 Aligned_cols=194 Identities=13% Similarity=0.056 Sum_probs=95.6
Q ss_pred CeeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHH-HhhcC---CeEEEeccccCCch
Q 006852 377 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNE-ARTYG---DIQLMPFVDYYNLI 452 (628)
Q Consensus 377 ~~~LlI~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~E-a~~yg---DIi~~df~DsY~nL 452 (628)
.+.+-|+|.+--....-.+.++.--.+. . ...+.++++-..+.+.. .++.++ .+.|. .+..+...+.-.+-
T Consensus 39 ~p~VSVIIpa~Ne~~~L~~~L~sL~~q~-y--p~~~eIIVVDd~StD~T--~~i~~~~~~~~~~~~~i~vi~~~~~~~g~ 113 (384)
T TIGR03469 39 WPAVVAVVPARNEADVIGECVTSLLEQD-Y--PGKLHVILVDDHSTDGT--ADIARAAARAYGRGDRLTVVSGQPLPPGW 113 (384)
T ss_pred CCCEEEEEecCCcHhHHHHHHHHHHhCC-C--CCceEEEEEeCCCCCcH--HHHHHHHHHhcCCCCcEEEecCCCCCCCC
Confidence 3445555555443333334444333331 1 11356666665554433 223333 23343 45555433322222
Q ss_pred hHHHHH---HHHhhh-ccCCceEEEEeCCcceecHHHHHHHHHhcCCCC-ceEEEEecCCCCCcCCCCCCeeeC------
Q 006852 453 TWKTLA---ICIFGT-DVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHS-GLLYGLINSESRPHRNPESKWYIS------ 521 (628)
Q Consensus 453 t~Ktl~---~~~~a~-~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~-~~~~G~v~~~~~p~Rd~~~Kwyvs------ 521 (628)
.-|.-+ +++.+. ..++.+|++.+|+|+.+..+.+.+.+....... .+..|...... .....+..++
T Consensus 114 ~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~---~~~~~~~~~~~~~~~~ 190 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC---ESFWEKLLIPAFVFFF 190 (384)
T ss_pred cchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC---CCHHHHHHHHHHHHHH
Confidence 345332 334443 234589999999999999888888776643322 33223221100 0000000000
Q ss_pred CCCCC------CCCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeec
Q 006852 522 LEEWP------EETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRY 584 (628)
Q Consensus 522 ~~~yp------~~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~ 584 (628)
...|| ......++.|++.++++++.+++--.. . ......||+.++.-+++. |..+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~-~--~~~~~~ED~~L~~r~~~~---G~~v~~ 253 (384)
T TIGR03469 191 QKLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGIA-A--IRGALIDDCTLAAAVKRS---GGRIWL 253 (384)
T ss_pred HHhcchhhhcCCCccceeecceEEEEEHHHHHHcCCHH-H--HhhCcccHHHHHHHHHHc---CCcEEE
Confidence 00011 011234568999999999999884321 1 112248999999888765 444444
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=81.03 E-value=2.7 Score=40.98 Aligned_cols=123 Identities=17% Similarity=0.119 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCC-CCceEEEEecCCCCCcCCCCC---CeeeC--CCCCCC
Q 006852 454 WKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINV-HSGLLYGLINSESRPHRNPES---KWYIS--LEEWPE 527 (628)
Q Consensus 454 ~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~-~~~~~~G~v~~~~~p~Rd~~~---Kwyvs--~~~yp~ 527 (628)
.|+-.+........+.++++..|+|+.++.+.|...+..+.. ...+..|.. .. .|.+...+ .-++. ...+..
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~a 94 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLP-RG-VPARGFWSRLEAAFFNFLPGVLQA 94 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecc-cc-cCCcCHHHHHHHHHHhHHHHHHHH
Confidence 555444433222368999999999999999998888877653 333333321 11 12221100 01110 000001
Q ss_pred CCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeec
Q 006852 528 ETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRY 584 (628)
Q Consensus 528 ~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~ 584 (628)
-.-.++|.|+.+++.+++++++--- . .+.-.--||..+|..+++. |..+..
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~GG~-~--~l~~~ladD~~l~~~~~~~---G~~v~~ 145 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEIGGF-E--ALADYLADDYALGRRLRAR---GYRVVL 145 (175)
T ss_pred hcCCCceecceeeeEHHHHHHcccH-H--HHhhhhhHHHHHHHHHHHC---CCeEEE
Confidence 1246889999999999999988321 1 1223448999999999876 555543
No 43
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=80.30 E-value=34 Score=37.33 Aligned_cols=195 Identities=13% Similarity=0.012 Sum_probs=108.5
Q ss_pred eeEEEEEecCcCcH-HHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHHH
Q 006852 378 VDLFIGVFSTANNF-KRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKT 456 (628)
Q Consensus 378 ~~LlI~V~S~~~~~-~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Kt 456 (628)
+.+-|+|.+-..+. --.+.++..=.++ -.+..+..+...+. ++.-+.+.+-.+++++.+.+... -.....|
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d----yp~~evivv~d~~~-d~~~~~~~~~~~~~~~~~~~~~~--~~~~~gK- 125 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD----YPRYEVIVVDDGST-DETYEILEELGAEYGPNFRVIYP--EKKNGGK- 125 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC----CCCceEEEECCCCC-hhHHHHHHHHHhhcCcceEEEec--cccCccc-
Confidence 56667777765555 3344444433331 12255655555333 33444555666666544444321 0121222
Q ss_pred HHHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCCCCce-EEEEecCCCCCc-CCCCCCe----eeCC----CCCC
Q 006852 457 LAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGL-LYGLINSESRPH-RNPESKW----YISL----EEWP 526 (628)
Q Consensus 457 l~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~-~~G~v~~~~~p~-Rd~~~Kw----yvs~----~~yp 526 (628)
...+.++.+..+.++|+..|-|+.+..+.|.+.+......... +.|.......+. .+.-++- |... ..+.
T Consensus 126 ~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (439)
T COG1215 126 AGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAA 205 (439)
T ss_pred hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhh
Confidence 2344555555569999999999999999999999886544333 333321111000 0000000 0000 0001
Q ss_pred -CCCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccCCC
Q 006852 527 -EETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEKDE 588 (628)
Q Consensus 527 -~~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~d~ 588 (628)
.......|.|.+.++.+++++++... ....--||..+++.+... |..+.|.++.
T Consensus 206 ~~~g~~~~~~G~~~~~rr~aL~~~g~~-----~~~~i~ED~~lt~~l~~~---G~~~~~~~~~ 260 (439)
T COG1215 206 SKGGLISFLSGSSSAFRRSALEEVGGW-----LEDTITEDADLTLRLHLR---GYRVVYVPEA 260 (439)
T ss_pred hhcCCeEEEcceeeeEEHHHHHHhCCC-----CCCceeccHHHHHHHHHC---CCeEEEeecc
Confidence 12257889999999999999988832 223346999999999844 6677666543
No 44
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=79.96 E-value=53 Score=32.25 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=58.1
Q ss_pred CceEEEEeCCcceecHHHHHHHH---HhcCCC-CceEEEEecCC-CCCcCCC---CCCeeeCCCCCCC--CCCCCCcCCC
Q 006852 468 SAKFVMKTDDDAFVRVDEVLTSL---KRINVH-SGLLYGLINSE-SRPHRNP---ESKWYISLEEWPE--ETYPPWAHGP 537 (628)
Q Consensus 468 ~a~fvlK~DDDtfVnv~~Ll~~L---~~~~~~-~~~~~G~v~~~-~~p~Rd~---~~Kwyvs~~~yp~--~~YPpYc~G~ 537 (628)
+++|++..|+|+.+..+.|...+ ...... .-..+|..... ....... ...|......... ..-..++.|+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITS 154 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeecc
Confidence 68999999999999988877774 222222 22233332221 1110000 0001100001111 1112455688
Q ss_pred ccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccC
Q 006852 538 GYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEK 586 (628)
Q Consensus 538 gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~ 586 (628)
|.++++++.+.+--- . ... ....||+.+++-+.+. |..+.+..
T Consensus 155 ~~~~rr~~~~~~ggf-d-~~~-~~~~eD~d~~~r~~~~---G~~~~~~~ 197 (237)
T cd02526 155 GSLISLEALEKVGGF-D-EDL-FIDYVDTEWCLRARSK---GYKIYVVP 197 (237)
T ss_pred ceEEcHHHHHHhCCC-C-HHH-cCccchHHHHHHHHHc---CCcEEEEc
Confidence 889999998887432 1 111 2456899988777665 44444433
No 45
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=79.87 E-value=29 Score=32.51 Aligned_cols=94 Identities=11% Similarity=-0.002 Sum_probs=56.6
Q ss_pred HhhhccCCceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCeeeCCCCCCCCCCCCCcCCCccc
Q 006852 461 IFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 540 (628)
Q Consensus 461 ~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~~YPpYc~G~gYV 540 (628)
..+.+....+|++..|+|..+..+.|...++... ....+.|.......... . ....|++++
T Consensus 72 n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~-~~~~v~g~~~~~~~~~~----~--------------~~~~~~~~~ 132 (182)
T cd06420 72 NKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAE-PGVFLSGSRVLLNEKLT----E--------------RGIRGCNMS 132 (182)
T ss_pred HHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhC-CCcEEecceeecccccc----e--------------eEeccceEE
Confidence 4444556789999999999999888877777653 23334443321111100 0 344678888
Q ss_pred cchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHh
Q 006852 541 VSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADM 575 (628)
Q Consensus 541 LS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l 575 (628)
+.+..+..+..- .........||+-++.-+.+.
T Consensus 133 ~~r~~~~~~ggf--~~~~~~~~~eD~~l~~r~~~~ 165 (182)
T cd06420 133 FWKKDLLAVNGF--DEEFTGWGGEDSELVARLLNS 165 (182)
T ss_pred EEHHHHHHhCCC--CcccccCCcchHHHHHHHHHc
Confidence 888887754422 112222347999888766655
No 46
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=79.12 E-value=6.7 Score=37.17 Aligned_cols=135 Identities=13% Similarity=0.116 Sum_probs=71.6
Q ss_pred eEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHHHH
Q 006852 411 TVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSL 490 (628)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L 490 (628)
.+.++.+-..+.+.. ...+++..+++..+..+.....+. |. ..+..+......+|++.+|+|.....+.|...+
T Consensus 29 ~~eiivvdd~s~d~t-~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 29 DYEIIFVDDGSTDRT-LEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CeEEEEEeCCCCccH-HHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 455555554444332 233444445566666655543322 21 222333334456999999999999888777777
Q ss_pred HhcCCCCceEEEEecCCCCCc-CCCCCCeeeCCCCCCCCCCCCCcCCCccccchHHHHHHHH
Q 006852 491 KRINVHSGLLYGLINSESRPH-RNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 551 (628)
Q Consensus 491 ~~~~~~~~~~~G~v~~~~~p~-Rd~~~Kwyvs~~~yp~~~YPpYc~G~gYVLS~dla~~I~~ 551 (628)
+.........+|.......+. +...++.+...........-+...|+.+++++++++.+..
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 103 AKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 765555567777654322110 0000011100000001222345678888999999998875
No 47
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=76.89 E-value=30 Score=34.64 Aligned_cols=117 Identities=14% Similarity=0.142 Sum_probs=65.0
Q ss_pred HHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCCC-Cce-EE-EEecCCCCCcCCCCCCeeeC-C-----CCCC---C
Q 006852 460 CIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVH-SGL-LY-GLINSESRPHRNPESKWYIS-L-----EEWP---E 527 (628)
Q Consensus 460 ~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~-~~~-~~-G~v~~~~~p~Rd~~~Kwyvs-~-----~~yp---~ 527 (628)
+..+....+.+|++.+|+|+.+..+.|.+.+...... ..+ +. |.+.....+ .....+++.. . ...+ .
T Consensus 76 ~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 76 CNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNAR-ENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCC-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444567999999999999999998888775432 222 22 222111100 0000011000 0 0001 1
Q ss_pred CCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeecc
Q 006852 528 ETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYE 585 (628)
Q Consensus 528 ~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~ 585 (628)
...+..+.|++.++++++.+.+... . . ....||..++.-+.+. |..+.+.
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~-~--~--~~~~eD~~l~~rl~~~---G~r~~~~ 204 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGW-D--P--FNVTEDADLGLRLARA---GYRTGVL 204 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCC-C--c--ccchhhHHHHHHHHHC---CceEEEe
Confidence 1234456899999999998887542 1 1 1236999998877554 5555444
No 48
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=73.29 E-value=74 Score=31.94 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=68.1
Q ss_pred eEEEEEEEeecCChhhhhhHHHHHhhcCC--eEEEeccccCCchhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHH
Q 006852 411 TVAVRFFVGLHKNQIVNGELWNEARTYGD--IQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLT 488 (628)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygD--Ii~~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~ 488 (628)
.+.++++-..+.+.. .+.+++-.++|++ +....... |.. |. ..+..+....+.+|++.+|+|..+.++.|..
T Consensus 40 ~~eiivvDdgS~D~t-~~i~~~~~~~~~~~~v~~~~~~~---n~G-~~-~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~ 113 (243)
T PLN02726 40 DFEIIVVDDGSPDGT-QDVVKQLQKVYGEDRILLRPRPG---KLG-LG-TAYIHGLKHASGDFVVIMDADLSHHPKYLPS 113 (243)
T ss_pred CeEEEEEeCCCCCCH-HHHHHHHHHhcCCCcEEEEecCC---CCC-HH-HHHHHHHHHcCCCEEEEEcCCCCCCHHHHHH
Confidence 566666655544432 2333333445553 33332222 211 11 1233333334689999999999999988888
Q ss_pred HHHhcC-CCCceEEEEecCCCC--C----cCCCCCC--eeeCCCCCCCCCCCCCcCCCccccchHHHHHHHHH
Q 006852 489 SLKRIN-VHSGLLYGLINSESR--P----HRNPESK--WYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKR 552 (628)
Q Consensus 489 ~L~~~~-~~~~~~~G~v~~~~~--p----~Rd~~~K--wyvs~~~yp~~~YPpYc~G~gYVLS~dla~~I~~~ 552 (628)
.+.... ....+.+|....... . .|.-.++ .++...... ... ..+.|++.++++++++.|...
T Consensus 114 l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~-~d~~g~~~~~rr~~~~~i~~~ 184 (243)
T PLN02726 114 FIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLW-PGV-SDLTGSFRLYKRSALEDLVSS 184 (243)
T ss_pred HHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhC-CCC-CcCCCcccceeHHHHHHHHhh
Confidence 777653 234566775432110 0 0100000 000000111 111 235788889999999999754
No 49
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=71.54 E-value=4.9 Score=41.76 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=34.6
Q ss_pred CCCccccchHHHHHHHHHhhcC--ccCCCCcchHHHHHHHHHhhhcCceeec
Q 006852 535 HGPGYVVSHDIGKAVYKRYKEG--RLKMFKLEDVAMGIWIADMKKEGLQVRY 584 (628)
Q Consensus 535 ~G~gYVLS~dla~~I~~~~~~~--~~~~~~lEDV~iGi~l~~l~~~gi~v~~ 584 (628)
+|+|++||..+|+.|.+..... +.+.+.--|-.+..|+.++ |++...
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~l---gv~LT~ 60 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAEL---GVPLTK 60 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---CCCcee
Confidence 8999999999999999875321 2333445788999999887 555543
No 50
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=67.77 E-value=12 Score=35.25 Aligned_cols=130 Identities=7% Similarity=-0.040 Sum_probs=68.2
Q ss_pred EEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCCchhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHHHHH
Q 006852 412 VAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLK 491 (628)
Q Consensus 412 v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~ 491 (628)
..+..+...+.+ .....+.+-.+++..+..+........ -..+..+..+...+|++.+|+|..+..+.|...+.
T Consensus 29 ~eiivvd~~s~d-~~~~~~~~~~~~~~~~~~~~~~~n~G~-----~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 29 YEIIVVDDGSTD-GTAEIARELAARVPRVRVIRLSRNFGK-----GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred EEEEEEcCCCCC-ChHHHHHHHHHhCCCeEEEEccCCCCc-----cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 444444433333 333445555556666655555444321 12233333444559999999999999888888887
Q ss_pred h-cCCCCceEEEEecCCCCCcCCCCCCeee--CCC----CCC--CCCCCCCcCCCccccchHHHHHHH
Q 006852 492 R-INVHSGLLYGLINSESRPHRNPESKWYI--SLE----EWP--EETYPPWAHGPGYVVSHDIGKAVY 550 (628)
Q Consensus 492 ~-~~~~~~~~~G~v~~~~~p~Rd~~~Kwyv--s~~----~yp--~~~YPpYc~G~gYVLS~dla~~I~ 550 (628)
. ........+|........ . ...++- ... ... ...-.....|+.+++++++++.|.
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 103 KLLEGGADVVIGSRFVRGGG-A--GMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHhccCCcEEEEEeecCCCc-c--cchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 6 344556677765432210 0 011100 000 000 111123345777789999999886
No 51
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=65.99 E-value=1e+02 Score=35.46 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=62.8
Q ss_pred CceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCe----eeCCCCCCC-----------CCCCC
Q 006852 468 SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKW----YISLEEWPE-----------ETYPP 532 (628)
Q Consensus 468 ~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kw----yvs~~~yp~-----------~~YPp 532 (628)
++++++..|-|..+..+.|... ....+...+.-+.+.... + +.+.| |. .+|.. -.-+-
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~-~~~~~~~~~VQ~pv~~~~---~-~~~~~~ag~y~--~ef~~~~~~~l~~r~~LG~~~ 230 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLY-NYLLPRHDFVQLPVFSLP---R-DWGEWVAGTYM--DEFAESHLKDLPVREALGGLI 230 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHH-HhhcCCCCEEecceeccC---C-chhHHHHHHHH--HHHHHHHHHHHHHHHhcCCcc
Confidence 5699999999999999987654 332232222211111111 1 11111 11 11111 01233
Q ss_pred CcCCCccccchHHHHHHHHHhhcCcc-CCCCcchHHHHHHHHHhhhcCceeeccCC
Q 006852 533 WAHGPGYVVSHDIGKAVYKRYKEGRL-KMFKLEDVAMGIWIADMKKEGLQVRYEKD 587 (628)
Q Consensus 533 Yc~G~gYVLS~dla~~I~~~~~~~~~-~~~~lEDV~iGi~l~~l~~~gi~v~~~~d 587 (628)
.|.|.|++++++++++|.....-... ...--||.-+|.-+... |.++.|.++
T Consensus 231 ~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~---G~rv~y~p~ 283 (504)
T PRK14716 231 PSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRA---GFRQIFVRV 283 (504)
T ss_pred ccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHC---CCEEEEecc
Confidence 46899999999999998653110001 12347999999998766 777777654
No 52
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=64.21 E-value=26 Score=33.36 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=47.5
Q ss_pred CCceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCeeeCC--CCC-----------CCCCCCCC
Q 006852 467 VSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISL--EEW-----------PEETYPPW 533 (628)
Q Consensus 467 ~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~--~~y-----------p~~~YPpY 533 (628)
.+.+|++.+|.|+.+.++.|...+...........|.... +++.+.|.-.. ..| ..-.-+.+
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNS-----KNPDDSWITRLYAFAFLVFNRLRPLGRSNLGLSCQ 154 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEee-----eCCccCHHHHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 3689999999999999888888877765444556665432 11122221000 000 01122346
Q ss_pred cCCCccccchHHHHH
Q 006852 534 AHGPGYVVSHDIGKA 548 (628)
Q Consensus 534 c~G~gYVLS~dla~~ 548 (628)
+.|.+++++++++++
T Consensus 155 ~~G~~~~~rr~~l~~ 169 (183)
T cd06438 155 LGGTGMCFPWAVLRQ 169 (183)
T ss_pred ecCchhhhHHHHHHh
Confidence 688999999998887
No 53
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=61.80 E-value=1.3e+02 Score=30.89 Aligned_cols=142 Identities=10% Similarity=0.021 Sum_probs=67.8
Q ss_pred hhcCCeEEEeccccCCchh-HHHH-HHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCCC--CceEEEEecCCC-C
Q 006852 435 RTYGDIQLMPFVDYYNLIT-WKTL-AICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVH--SGLLYGLINSES-R 509 (628)
Q Consensus 435 ~~ygDIi~~df~DsY~nLt-~Ktl-~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~--~~~~~G~v~~~~-~ 509 (628)
+.+.+|..+...+ |+- .+.. .++++|.. .+++|++..|||+.+..+.|...++..... .-.+.|...... .
T Consensus 42 ~~~~~i~~i~~~~---N~G~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (281)
T TIGR01556 42 LRGQKIALIHLGD---NQGIAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGT 117 (281)
T ss_pred ccCCCeEEEECCC---CcchHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCC
Confidence 3345565555433 322 1222 23455543 268999999999999987777766654322 222333221111 0
Q ss_pred CcCCC---CCCeeeCCC--CCCCC-CCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceee
Q 006852 510 PHRNP---ESKWYISLE--EWPEE-TYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVR 583 (628)
Q Consensus 510 p~Rd~---~~Kwyvs~~--~yp~~-~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~ 583 (628)
..+.+ ...+..+.. ..+.. .-..++.++|.++++++++++----+ .+ ++..||+-+.+=+.+. |..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~li~~~~~~~iG~fde--~~-fi~~~D~e~~~R~~~~---G~~i~ 191 (281)
T TIGR01556 118 SRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISSGCLITREVYQRLGMMDE--EL-FIDHVDTEWSLRAQNY---GIPLY 191 (281)
T ss_pred cccCCceeecccceeeecccccCCceeccEEEcCcceeeHHHHHHhCCccH--hh-cccchHHHHHHHHHHC---CCEEE
Confidence 00000 000100000 00111 11235556777899999988843111 11 2346888765554443 54444
Q ss_pred ccC
Q 006852 584 YEK 586 (628)
Q Consensus 584 ~~~ 586 (628)
+..
T Consensus 192 ~~~ 194 (281)
T TIGR01556 192 IDP 194 (281)
T ss_pred EeC
Confidence 333
No 54
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=58.24 E-value=1.9e+02 Score=28.38 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=59.3
Q ss_pred HhhhccCCceEEEEeCCcceecHHHHHHHHHhcCCCC-ceEEEEecCCCCCcCCCCCCeeeCCCC--------------C
Q 006852 461 IFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHS-GLLYGLINSESRPHRNPESKWYISLEE--------------W 525 (628)
Q Consensus 461 ~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~-~~~~G~v~~~~~p~Rd~~~Kwyvs~~~--------------y 525 (628)
..+....+.+|++.+|.|+.+..+.|...+......+ ..+.|.+.. .+....|...... +
T Consensus 80 n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 80 AEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGH-----INANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceee-----EcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 3444445789999999999999988887554432221 233333211 1111122100000 0
Q ss_pred CCCCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccC
Q 006852 526 PEETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEK 586 (628)
Q Consensus 526 p~~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~ 586 (628)
....+ ..+.|++-++.+++.+.+-- +.. ....||+.++.-+... |..+.|..
T Consensus 155 ~~~~~-~~~~g~~~~~rr~~~~~vgg-~~~----~~~~ED~~l~~rl~~~---G~~~~~~~ 206 (232)
T cd06437 155 STGLF-FNFNGTAGVWRKECIEDAGG-WNH----DTLTEDLDLSYRAQLK---GWKFVYLD 206 (232)
T ss_pred hcCCe-EEeccchhhhhHHHHHHhCC-CCC----CcchhhHHHHHHHHHC---CCeEEEec
Confidence 11111 12356666788888877642 111 1247999998777654 55554443
No 55
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=57.65 E-value=2.9e+02 Score=33.39 Aligned_cols=201 Identities=12% Similarity=-0.015 Sum_probs=103.4
Q ss_pred CCCCCCCeeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccccCC
Q 006852 371 PLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYN 450 (628)
Q Consensus 371 ~~~~~~~~~LlI~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~DsY~ 450 (628)
.++......+-|+|.-....-.-.+.|...=.+... .++.+.|++. +.++.....+++-.++|+++..+-... ..
T Consensus 56 ~l~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~ldY---P~~eI~vi~~-~nD~~T~~~~~~l~~~~p~~~~v~~~~-~g 130 (727)
T PRK11234 56 ELYKPDEKPLAIMVPAWNETGVIGNMAELAATTLDY---ENYHIFVGTY-PNDPATQADVDAVCARFPNVHKVVCAR-PG 130 (727)
T ss_pred hcccCCCCCEEEEEecCcchhhHHHHHHHHHHhCCC---CCeEEEEEec-CCChhHHHHHHHHHHHCCCcEEEEeCC-CC
Confidence 344345566777777655444444555543212111 2355555544 334443455555567788864333333 12
Q ss_pred chhHHHHHH---HHhhhc---cC--CceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCC---CCCee
Q 006852 451 LITWKTLAI---CIFGTD---VV--SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNP---ESKWY 519 (628)
Q Consensus 451 nLt~Ktl~~---~~~a~~---~~--~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~---~~Kwy 519 (628)
.+-|.-+. +..+.. +. .+..++-.|-|+.|.++.|. .+..+.....+.-+-.. +..|+. -++-|
T Consensus 131 -~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~---p~~~~~~~~~~~~~ 205 (727)
T PRK11234 131 -PTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVY---PFEREWTHFTSGTY 205 (727)
T ss_pred -CCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeeccc---CCCccHHHHHHHHH
Confidence 24565532 233211 22 34557779999999999996 34443332333333221 111210 01111
Q ss_pred eCCCCCC---------CC--CCCCCcCCCccccchHHHHHHHHHhhc-CccCCCCcchHHHHHHHHHhhhcCceeeccC
Q 006852 520 ISLEEWP---------EE--TYPPWAHGPGYVVSHDIGKAVYKRYKE-GRLKMFKLEDVAMGIWIADMKKEGLQVRYEK 586 (628)
Q Consensus 520 vs~~~yp---------~~--~YPpYc~G~gYVLS~dla~~I~~~~~~-~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~ 586 (628)
+. +|. .. .-+-.+.|.|..+++.+++.+.+.... .-..-.--||.-+|+-+... |..+.|..
T Consensus 206 ~~--EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~---G~~v~f~~ 279 (727)
T PRK11234 206 ID--EFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEK---GMREIFVR 279 (727)
T ss_pred HH--HHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHC---CCEEEEcc
Confidence 11 111 01 124457899999998877666654200 11223346999999998776 66776654
No 56
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=53.50 E-value=86 Score=30.35 Aligned_cols=83 Identities=10% Similarity=-0.049 Sum_probs=47.8
Q ss_pred CCceEEEEeCCcceecHHHHHHHHHh-cCCCCceEEEEecCCCCCcCCCCCCe--eeCC--C---CCCCCCCCCCcCCCc
Q 006852 467 VSAKFVMKTDDDAFVRVDEVLTSLKR-INVHSGLLYGLINSESRPHRNPESKW--YISL--E---EWPEETYPPWAHGPG 538 (628)
Q Consensus 467 ~~a~fvlK~DDDtfVnv~~Ll~~L~~-~~~~~~~~~G~v~~~~~p~Rd~~~Kw--yvs~--~---~yp~~~YPpYc~G~g 538 (628)
...+|++.+|+|..+..+.|...++. ..+......|........... ...+ +.+. . .+....-...+.|++
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEG-WGLKRKLISRGANLLARLLLGRKVSDPTSGF 155 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCC-CcHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 34589999999999998888888876 344455666654322111100 0000 0000 0 000011124567888
Q ss_pred cccchHHHHHHH
Q 006852 539 YVVSHDIGKAVY 550 (628)
Q Consensus 539 YVLS~dla~~I~ 550 (628)
.++++++++.+.
T Consensus 156 ~~~~r~~~~~ig 167 (224)
T cd06442 156 RAYRREVLEKLI 167 (224)
T ss_pred chhhHHHHHHHh
Confidence 899999999997
No 57
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=48.08 E-value=1.2e+02 Score=29.27 Aligned_cols=89 Identities=10% Similarity=0.060 Sum_probs=51.4
Q ss_pred eEEEEEEEeecCChhhhhhHHHHHhhcCCe-EEEeccccCCchhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHHH
Q 006852 411 TVAVRFFVGLHKNQIVNGELWNEARTYGDI-QLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTS 489 (628)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDI-i~~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~ 489 (628)
.+.++.+-+.+.+. ....+++..+.++.. ..+..... .- |. ..+..+......+|++.+|+|..+..+.+...
T Consensus 30 ~~eiivvdd~S~D~-t~~~~~~~~~~~~~~i~~i~~~~n---~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKDG-TAEVARKLARKNPALIRVLTLPKN---RG-KG-GAVRAGMLAARGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCCc-hHHHHHHHHHhCCCcEEEEEcccC---CC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 45666555544443 334455555566664 33333222 11 11 22233333345699999999999999998888
Q ss_pred HHhc-CCCCceEEEEec
Q 006852 490 LKRI-NVHSGLLYGLIN 505 (628)
Q Consensus 490 L~~~-~~~~~~~~G~v~ 505 (628)
++.. .......+|...
T Consensus 104 ~~~~~~~~~~~v~g~r~ 120 (211)
T cd04188 104 EEALKTSGYDIAIGSRA 120 (211)
T ss_pred HHHHhccCCcEEEEEee
Confidence 8863 444566777654
No 58
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=47.92 E-value=1.3e+02 Score=32.33 Aligned_cols=135 Identities=11% Similarity=0.061 Sum_probs=69.9
Q ss_pred eEEEEEEEeecCChhhhhhHHHHHhhcCC-eEEEeccccCCchhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHHH
Q 006852 411 TVAVRFFVGLHKNQIVNGELWNEARTYGD-IQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTS 489 (628)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygD-Ii~~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~ 489 (628)
.+.++++-..+.+... +.+++-++.+++ ++......++- |.- .+..+....+.+|++.+|+|.-.+++.+.++
T Consensus 38 ~~EIIvVDDgS~D~T~-~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 38 EYEILLIDDGSSDNSA-EMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CEEEEEEeCCCCCcHH-HHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Confidence 4677777665555332 223333344444 44444333332 111 1222333347899999999999999999888
Q ss_pred HHhcCCCCceEEEEecCC-CCCcCCCCCCeeeCC-CCCCCCCCCCCcCCCccccchHHHHHHHHH
Q 006852 490 LKRINVHSGLLYGLINSE-SRPHRNPESKWYISL-EEWPEETYPPWAHGPGYVVSHDIGKAVYKR 552 (628)
Q Consensus 490 L~~~~~~~~~~~G~v~~~-~~p~Rd~~~Kwyvs~-~~yp~~~YPpYc~G~gYVLS~dla~~I~~~ 552 (628)
++..........|..... ..+.|...++.+--. .......++.+.+| .-++++++++.+...
T Consensus 112 ~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~g-fr~~~r~~~~~l~~~ 175 (325)
T PRK10714 112 VAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCM-LRAYRRHIVDAMLHC 175 (325)
T ss_pred HHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcC-eEEEcHHHHHHHHHC
Confidence 887643334555543221 122222112211000 01112334544333 238999999998653
No 59
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=44.02 E-value=71 Score=33.66 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=28.4
Q ss_pred EEEEEEEEcCceEEEE-----ECCeEE-EEEEeccCCCcccceEEEEcC
Q 006852 298 LFVATIRVGSEGIQTT-----VDGKHI-TSFAYRETLEPWLVNEVRISG 340 (628)
Q Consensus 298 ~F~i~i~~~~egf~v~-----VnG~h~-~sF~yR~~l~p~~v~~l~i~G 340 (628)
.|.++|..+.+..+.+ .|++.+ .+|+|+.=+.-.+|++++|+|
T Consensus 135 e~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtYf~vsdisevrveG 183 (305)
T KOG1594|consen 135 ELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTYFRVSDISEVRVEG 183 (305)
T ss_pred EEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeeeEeecccceEEEec
Confidence 4666666676555543 277777 678888755555677766666
No 60
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=39.88 E-value=21 Score=36.21 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=60.1
Q ss_pred cCCceEEEEeCCcceecHHHHHHHHHhcC--CCCceEEEEecCCCCCcCCCCCC-----eee----CCCCCCCCCCCCCc
Q 006852 466 VVSAKFVMKTDDDAFVRVDEVLTSLKRIN--VHSGLLYGLINSESRPHRNPESK-----WYI----SLEEWPEETYPPWA 534 (628)
Q Consensus 466 ~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~--~~~~~~~G~v~~~~~p~Rd~~~K-----wyv----s~~~yp~~~YPpYc 534 (628)
..+.+|++.+|.|+.+..+.|...+..+. +.-....|.+...... .+.-.+ |.. -......-.+...+
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~-~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~ 149 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKK-QGPLVMYQVFEYAISHWLDKAFESVFGFVTCL 149 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCc-chhHHHhHheehhhhhhhcccHHHcCCceEEC
Confidence 34789999999999999998887776653 3223455654321110 000000 000 00001112345677
Q ss_pred CCCccccchHHHHHHHHHhhc--------Ccc-------CCCCcchHHHHHHHHHh
Q 006852 535 HGPGYVVSHDIGKAVYKRYKE--------GRL-------KMFKLEDVAMGIWIADM 575 (628)
Q Consensus 535 ~G~gYVLS~dla~~I~~~~~~--------~~~-------~~~~lEDV~iGi~l~~l 575 (628)
.|+++++.+++++.+...... ..+ ...--||..++..+.+.
T Consensus 150 ~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~ 205 (244)
T cd04190 150 PGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKA 205 (244)
T ss_pred CCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhcc
Confidence 899999999998776332100 000 01236888888777554
No 61
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=39.55 E-value=1.2e+02 Score=33.14 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=43.0
Q ss_pred CCceEEEEeCCcceecHH---HHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCeeeCCCCCCCCCC-CCCcCCCccccc
Q 006852 467 VSAKFVMKTDDDAFVRVD---EVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETY-PPWAHGPGYVVS 542 (628)
Q Consensus 467 ~~a~fvlK~DDDtfVnv~---~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~~Y-PpYc~G~gYVLS 542 (628)
.++++++.+|||+.+.++ .+...|..+.....++. +.... + .|+....... |...| -.|+.|.|.++.
T Consensus 96 ~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~--ISa~N----d-nG~~~~~~~~-~~~lyrs~ff~glGWml~ 167 (334)
T cd02514 96 FGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWC--ISAWN----D-NGKEHFVDDT-PSLLYRTDFFPGLGWMLT 167 (334)
T ss_pred cCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEE--EEeec----c-CCcccccCCC-cceEEEecCCCchHHHHH
Confidence 479999999999999988 33454544433333222 21111 0 1221111011 22222 267889999999
Q ss_pred hHHHHHH
Q 006852 543 HDIGKAV 549 (628)
Q Consensus 543 ~dla~~I 549 (628)
+++-+.+
T Consensus 168 r~~W~e~ 174 (334)
T cd02514 168 RKLWKEL 174 (334)
T ss_pred HHHHHHh
Confidence 9998777
No 62
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=38.63 E-value=2.8e+02 Score=33.29 Aligned_cols=128 Identities=13% Similarity=0.014 Sum_probs=67.8
Q ss_pred chhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhcCCCCce-EE-EEe-cCCCCCc-CCCCCCeeeCCC--C
Q 006852 451 LITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGL-LY-GLI-NSESRPH-RNPESKWYISLE--E 524 (628)
Q Consensus 451 nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~-~~-G~v-~~~~~p~-Rd~~~Kwyvs~~--~ 524 (628)
|...|.-+ +..+.+..+.+|++..|.|+.+..+.|.+.+.......++ +. +.. ..+..+. |+......++.+ .
T Consensus 212 n~~~KAgn-LN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAGN-INNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChHH-HHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 43445432 3444444578999999999999988888777654222221 11 111 1111111 110000000000 0
Q ss_pred -C----C--CCCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccCC
Q 006852 525 -W----P--EETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEKD 587 (628)
Q Consensus 525 -y----p--~~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~d 587 (628)
| + ...-..+|.|.+.++.+++.+++---. . ..-.||..++.-+.+. |....|.++
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~----~-~~vtED~~l~~rL~~~---G~~~~y~~~ 352 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA----G-ETVTEDAETALKLHRR---GWNSAYLDR 352 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC----C-CCcCcHHHHHHHHHHc---CCeEEEecc
Confidence 0 0 000124677999999999988875321 1 1237999999988765 556555543
No 63
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=35.69 E-value=5.2e+02 Score=26.76 Aligned_cols=160 Identities=11% Similarity=0.009 Sum_probs=84.4
Q ss_pred CeEEEEEEEeecCChhhhhhHHHHHhhcCCe-EE-EeccccCCchhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHH
Q 006852 410 GTVAVRFFVGLHKNQIVNGELWNEARTYGDI-QL-MPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVL 487 (628)
Q Consensus 410 ~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDI-i~-~df~DsY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll 487 (628)
..+.++++-+.+. ....+.|.+-.+.++-+ ++ .+....+.+.+ .+...+......+|++.+|.|+++..+.+.
T Consensus 33 ~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~~i~ 107 (281)
T PF10111_consen 33 PDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPDFIE 107 (281)
T ss_pred CCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHHHHH
Confidence 3455555544433 23346677777777766 32 22222122211 122344444589999999999999999998
Q ss_pred HHHH---hcCC-CCceEEEEecCCCCCcCC--CC-CCeeeCCCCC------CCCCCC-CCcCCCccccchHHHHHHHHHh
Q 006852 488 TSLK---RINV-HSGLLYGLINSESRPHRN--PE-SKWYISLEEW------PEETYP-PWAHGPGYVVSHDIGKAVYKRY 553 (628)
Q Consensus 488 ~~L~---~~~~-~~~~~~G~v~~~~~p~Rd--~~-~Kwyvs~~~y------p~~~YP-pYc~G~gYVLS~dla~~I~~~~ 553 (628)
+.++ .... ...++.+-+.....+... .. .+........ ....+. .+..|++.+++++.-.+|.--
T Consensus 108 ~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGf- 186 (281)
T PF10111_consen 108 KLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGF- 186 (281)
T ss_pred HHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCC-
Confidence 8888 4332 233444333222211110 00 0000000000 011111 233568899999998887642
Q ss_pred hcCccCCCCcchHHHHHHHHHhh
Q 006852 554 KEGRLKMFKLEDVAMGIWIADMK 576 (628)
Q Consensus 554 ~~~~~~~~~lEDV~iGi~l~~l~ 576 (628)
.........||.=++.=+.+.+
T Consensus 187 -DE~f~G~G~ED~D~~~RL~~~~ 208 (281)
T PF10111_consen 187 -DERFRGWGYEDIDFGYRLKKAG 208 (281)
T ss_pred -CccccCCCcchHHHHHHHHHcC
Confidence 1233345789998887777663
No 64
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=35.05 E-value=1.1e+02 Score=32.03 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=27.5
Q ss_pred EEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEEeecCC
Q 006852 382 IGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKN 423 (628)
Q Consensus 382 I~V~S~~~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~ 423 (628)
+.|.|-.+..+|+..++++-.... + +...|+-|.++.
T Consensus 5 ~~vIsL~~s~~R~~~~~~~f~~~~----~-~~f~~~~av~~~ 41 (255)
T COG3306 5 IHVISLKSSQERLEHVAETFEALG----G-LPFQRFDAVNGK 41 (255)
T ss_pred eehhhhhhhHHHHHHHHHHHhhcc----C-CCceEeeccCcc
Confidence 456777788889999999988742 2 667778777664
No 65
>PTZ00334 trans-sialidase; Provisional
Probab=34.66 E-value=2.9e+02 Score=33.61 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=38.5
Q ss_pred CCCcCCCEEEEEEEEcC-ceEEEEECCeEEEEEEecc-CCCcccceEEEEcCCe
Q 006852 291 FPFKQGHLFVATIRVGS-EGIQTTVDGKHITSFAYRE-TLEPWLVNEVRISGDL 342 (628)
Q Consensus 291 fPF~~G~~F~i~i~~~~-egf~v~VnG~h~~sF~yR~-~l~p~~v~~l~i~Gdv 342 (628)
-+..+|+...+.|.... ..-.++|||+.+.+-.... .-.+..|+++.|-||-
T Consensus 638 stWe~~k~yqVal~L~~G~~gsvYVDG~~vg~~~~~l~~~~~~~IshFyiGgdg 691 (780)
T PTZ00334 638 SNWEPETTHQVAIVLRNGKQGSAYVDGQRVGDASCELKNTDSKGISHFYIGGDG 691 (780)
T ss_pred ccccCCCeEEEEEEEeCCCeEEEEECCEEecCcccccCCCCCcccceEEECCCc
Confidence 46788999999998854 4789999999996643322 1135689999998763
No 66
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=34.02 E-value=3e+02 Score=23.58 Aligned_cols=73 Identities=8% Similarity=0.033 Sum_probs=47.3
Q ss_pred CCceEEEEeCCcceecHHHHHHHHHhcC--CCCceEEEEecCCCCCcCCCCCCeeeCCCCCCCCCCCCCcCCCccccchH
Q 006852 467 VSAKFVMKTDDDAFVRVDEVLTSLKRIN--VHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHD 544 (628)
Q Consensus 467 ~~a~fvlK~DDDtfVnv~~Ll~~L~~~~--~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~~YPpYc~G~gYVLS~d 544 (628)
.+.+|++.+|+|..+..+.+...+.... +...+..|. ++++++++
T Consensus 76 ~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------------~~~~~~~~ 122 (156)
T cd00761 76 ARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP---------------------------------GNLLFRRE 122 (156)
T ss_pred hcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc---------------------------------chheeeHH
Confidence 3799999999999999888877644322 222222232 78999999
Q ss_pred HHHHHHHHhhcCccCCCCcchHHHHHHHHHh
Q 006852 545 IGKAVYKRYKEGRLKMFKLEDVAMGIWIADM 575 (628)
Q Consensus 545 la~~I~~~~~~~~~~~~~lEDV~iGi~l~~l 575 (628)
+.+.+..... ......||..++..+.+.
T Consensus 123 ~~~~~~~~~~---~~~~~~ed~~~~~~~~~~ 150 (156)
T cd00761 123 LLEEIGGFDE---ALLSGEEDDDFLLRLLRG 150 (156)
T ss_pred HHHHhCCcch---HhcCCcchHHHHHHHHhh
Confidence 9888764321 111226888777666543
No 67
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=29.57 E-value=1.4e+02 Score=28.35 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=31.6
Q ss_pred ccCCCCcCCCEEEEEEEEcCceEEEEECCeEEEEEEecc
Q 006852 288 KRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRE 326 (628)
Q Consensus 288 ~~~fPF~~G~~F~i~i~~~~egf~v~VnG~h~~sF~yR~ 326 (628)
.....+..|+=.+++|+|..+.+.+.|||+.+.++.-..
T Consensus 119 ~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~~ 157 (185)
T PF06439_consen 119 SVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDPS 157 (185)
T ss_dssp SS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTS
T ss_pred cccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcCC
Confidence 456778999999999999999999999999998887665
No 68
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=29.17 E-value=4.7e+02 Score=31.41 Aligned_cols=201 Identities=11% Similarity=0.083 Sum_probs=103.5
Q ss_pred CCeeEEEEEecCcCcHH-HHHHHHHHhccccccC-CCeEEEEEEEeecCChhhhh----hHHHHHhhcC---CeEEEecc
Q 006852 376 KPVDLFIGVFSTANNFK-RRMAVRRTWMQYTEVR-SGTVAVRFFVGLHKNQIVNG----ELWNEARTYG---DIQLMPFV 446 (628)
Q Consensus 376 ~~~~LlI~V~S~~~~~~-rR~aIR~TW~~~~~~~-~~~v~v~FvvG~~~~~~~~~----~L~~Ea~~yg---DIi~~df~ 446 (628)
...++.|+|.+.-...+ -+..|+.+..+..... ..++.+ |++..+.++.... .+.+=.++|+ .|.. .
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~y---r 197 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIFY---R 197 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEE---E
Confidence 44566666666654443 2356777765422111 224555 8887766544321 1222234443 3433 3
Q ss_pred ccCCchhHHHHHHHHhhhcc-CCceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCeeeCCCCC
Q 006852 447 DYYNLITWKTLAICIFGTDV-VSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEW 525 (628)
Q Consensus 447 DsY~nLt~Ktl~~~~~a~~~-~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~y 525 (628)
..-.|.-.|.-..-.+.... .+++|++-.|-|+.+..+.|.+.+.....+.+ +|-+.....+.. .. .++--...+
T Consensus 198 ~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n-~~-slfaR~qqf 273 (691)
T PRK05454 198 RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVG-AD-TLFARLQQF 273 (691)
T ss_pred ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcC-CC-CHHHHHHHH
Confidence 33345556776655554442 47899999999999999999888876532222 555543222211 11 111100011
Q ss_pred CCCCCC--------------CCcCCCccccchHHHHHHHHHhhc-Ccc---CCCCcchHHHHHHHHHhhhcCceeeccCC
Q 006852 526 PEETYP--------------PWAHGPGYVVSHDIGKAVYKRYKE-GRL---KMFKLEDVAMGIWIADMKKEGLQVRYEKD 587 (628)
Q Consensus 526 p~~~YP--------------pYc~G~gYVLS~dla~~I~~~~~~-~~~---~~~~lEDV~iGi~l~~l~~~gi~v~~~~d 587 (628)
....|- ..+.|...|+.+++...+.....- ... ...--||...|..+++. |-.+.|..+
T Consensus 274 ~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~---GyrV~~~pd 350 (691)
T PRK05454 274 ATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRA---GWGVWLAPD 350 (691)
T ss_pred HHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHC---CCEEEEcCc
Confidence 111111 012356667888776554311000 011 12246899999998875 667777766
No 69
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=25.82 E-value=3.6e+02 Score=33.23 Aligned_cols=126 Identities=12% Similarity=0.050 Sum_probs=67.4
Q ss_pred chhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHHHHHhc--CCCCceEEEEec-CCCCC-cCCCCCCe-eeCCC-C
Q 006852 451 LITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRI--NVHSGLLYGLIN-SESRP-HRNPESKW-YISLE-E 524 (628)
Q Consensus 451 nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~--~~~~~~~~G~v~-~~~~p-~Rd~~~Kw-yvs~~-~ 524 (628)
|...|.- .+..+.+..+.+|++..|.|+.+..+-|...+... ++.-.+..+... .+..| .|+- +.+ ..+.+ +
T Consensus 323 n~~gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl-~~~~~~~~e~~ 400 (852)
T PRK11498 323 HEHAKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNL-GRFRKTPNEGT 400 (852)
T ss_pred CCcchHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhh-HHHhhcccchh
Confidence 3334543 23444444578999999999999988877665432 222222222110 01111 1110 000 00000 0
Q ss_pred --C----C--CCCCCCCcCCCccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeeccC
Q 006852 525 --W----P--EETYPPWAHGPGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRYEK 586 (628)
Q Consensus 525 --y----p--~~~YPpYc~G~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~~~ 586 (628)
| + ...--.+|.|++.++.+++++.+---. .. .--||.-+++-+.+. |-.+.|..
T Consensus 401 ~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd----~~-titED~dlslRL~~~---Gyrv~yl~ 462 (852)
T PRK11498 401 LFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA----VE-TVTEDAHTSLRLHRR---GYTSAYMR 462 (852)
T ss_pred HHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCCC----CC-ccCccHHHHHHHHHc---CCEEEEEe
Confidence 0 0 000124678999999999999885421 11 236999999988765 65666654
No 70
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=24.69 E-value=2e+02 Score=30.55 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=52.8
Q ss_pred eEEEEEEEeecCChhhhhhHHHHHhhcCCeEEEeccc--cCCchhHHHHHHHHhhhccCCceEEEEeCCcceecHHHHHH
Q 006852 411 TVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVD--YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLT 488 (628)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIi~~df~D--sY~nLt~Ktl~~~~~a~~~~~a~fvlK~DDDtfVnv~~Ll~ 488 (628)
.+.+.|+-|.. ..+..|.+=.....-++-+++.+ .+..-+....++..|+.+.++..+++..|-|+|...|+..+
T Consensus 38 ~~~vi~~~~~~---~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k 114 (346)
T COG4092 38 ITMVICLRAHE---VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAK 114 (346)
T ss_pred cEEEEEEecch---hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHHHHHH
Confidence 34444444432 33455555555556667777764 44444555556677887777999999999999999999988
Q ss_pred HHH
Q 006852 489 SLK 491 (628)
Q Consensus 489 ~L~ 491 (628)
.|+
T Consensus 115 ~l~ 117 (346)
T COG4092 115 MLS 117 (346)
T ss_pred HHH
Confidence 873
No 71
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=23.99 E-value=6.4e+02 Score=24.07 Aligned_cols=110 Identities=12% Similarity=0.059 Sum_probs=57.1
Q ss_pred HhhhccCCceEEEEeCCcceecHHHHHHHHHhcCCCCceEEEEecCC----CCCcCCCCCCeeeCCCCCCCCCCCCCcCC
Q 006852 461 IFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSE----SRPHRNPESKWYISLEEWPEETYPPWAHG 536 (628)
Q Consensus 461 ~~a~~~~~a~fvlK~DDDtfVnv~~Ll~~L~~~~~~~~~~~G~v~~~----~~p~Rd~~~Kwyvs~~~yp~~~YPpYc~G 536 (628)
..+......+|++.+|+|..+..+.+...+...... ....|..... ....+....++... ......+ ..+
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~ 138 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRAD-GAVAGAFRLRFDDPGPRLRLLELGANLR----SRLFGLP-YGD 138 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcC-CcEEEEEEeeecCCccchhhhhhcccce----ecccCCC-cCC
Confidence 334444458999999999999887777766554333 2333332211 11111001111110 0011111 235
Q ss_pred CccccchHHHHHHHHHhhcCccCCCCcchHHHHHHHHHhhhcCceeec
Q 006852 537 PGYVVSHDIGKAVYKRYKEGRLKMFKLEDVAMGIWIADMKKEGLQVRY 584 (628)
Q Consensus 537 ~gYVLS~dla~~I~~~~~~~~~~~~~lEDV~iGi~l~~l~~~gi~v~~ 584 (628)
.|.++++++...+..- . - .+..||.-++.-+.+. |..+.+
T Consensus 139 ~~~~~r~~~~~~~G~f-d---~-~~~~ED~d~~~r~~~~---G~~~~~ 178 (221)
T cd02522 139 QGLFIRRELFEELGGF-P---E-LPLMEDVELVRRLRRR---GRPALL 178 (221)
T ss_pred ceEEEEHHHHHHhCCC-C---c-cccccHHHHHHHHHhC---CCEEEc
Confidence 6788999988777532 1 1 1268999887655544 544443
No 72
>PHA01631 hypothetical protein
Probab=21.57 E-value=2.2e+02 Score=28.04 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=41.9
Q ss_pred CCceEEEEeCCcceecHH-HHHHHHHhcCCCCceEEEEecCCCCCcCCCCCCeeeCCCCCCCCCCCCCcCCCccccchHH
Q 006852 467 VSAKFVMKTDDDAFVRVD-EVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDI 545 (628)
Q Consensus 467 ~~a~fvlK~DDDtfVnv~-~Ll~~L~~~~~~~~~~~G~v~~~~~p~Rd~~~Kwyvs~~~yp~~~YPpYc~G~gYVLS~dl 545 (628)
.+-+.++.+|.|++|+.- .+ .+.... ....+|.-.+|.+.+-+||.|.-|++.+..
T Consensus 70 i~DDi~~iIDSDV~ipn~~~~-------~~~~~v----------------~t~CiPA~~kp~~~v~~FC~sTNf~~pr~~ 126 (176)
T PHA01631 70 IEDDIIAIIDSDLIIPNLREI-------IPNERV----------------FTPCYWLYYDWANEIRPFCSGTNYIFRKSL 126 (176)
T ss_pred CCccEEEEeccceEecCcccc-------ccCCCc----------------cceeeeeeecCCCcEEEEEccccEEeeHHH
Confidence 467888899999999653 21 111111 122233333444556689999999999999
Q ss_pred HHHHHHHh
Q 006852 546 GKAVYKRY 553 (628)
Q Consensus 546 a~~I~~~~ 553 (628)
+..+....
T Consensus 127 l~~l~~vi 134 (176)
T PHA01631 127 LPYLEYTI 134 (176)
T ss_pred hHHHHHHH
Confidence 99888763
Done!