Query 006854
Match_columns 628
No_of_seqs 310 out of 2892
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 15:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 4E-107 8E-112 910.5 56.9 620 6-627 3-633 (868)
2 PLN02270 phospholipase D alpha 100.0 1.1E-94 2.3E-99 810.7 52.1 555 12-627 3-569 (808)
3 PLN02352 phospholipase D epsil 100.0 1.4E-87 3E-92 752.6 49.6 508 11-627 4-519 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 2.2E-76 4.7E-81 659.0 38.8 554 7-627 66-627 (887)
5 PLN02866 phospholipase D 100.0 4.8E-55 1E-59 498.4 32.3 347 203-627 321-792 (1068)
6 PRK12452 cardiolipin synthetas 100.0 6.7E-39 1.4E-43 357.3 26.5 260 203-625 131-391 (509)
7 PRK01642 cls cardiolipin synth 100.0 8.7E-38 1.9E-42 347.5 27.3 257 203-625 107-365 (483)
8 PRK11263 cardiolipin synthase 100.0 7.1E-35 1.5E-39 316.6 26.1 250 207-625 3-253 (411)
9 COG1502 Cls Phosphatidylserine 99.9 1.4E-25 3E-30 247.1 25.5 259 209-625 57-317 (438)
10 PHA03003 palmytilated EEV memb 99.9 6.6E-26 1.4E-30 244.2 21.0 244 241-625 30-274 (369)
11 PRK09428 pssA phosphatidylseri 99.9 3.3E-25 7.2E-30 242.8 22.9 268 209-625 22-298 (451)
12 PHA02820 phospholipase-D-like 99.9 9.6E-25 2.1E-29 238.3 22.7 251 241-626 25-278 (424)
13 cd04015 C2_plant_PLD C2 domain 99.9 8.4E-22 1.8E-26 188.0 16.1 157 12-180 2-158 (158)
14 cd04016 C2_Tollip C2 domain pr 99.8 1E-19 2.3E-24 165.7 14.2 117 17-179 2-121 (121)
15 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.4E-18 3.1E-23 158.0 15.5 120 18-181 1-121 (121)
16 cd08682 C2_Rab11-FIP_classI C2 99.8 1.5E-18 3.2E-23 159.1 13.5 117 19-178 1-126 (126)
17 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.7E-18 8E-23 156.5 14.7 115 18-175 1-125 (126)
18 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 8.1E-18 1.8E-22 153.4 13.9 99 80-179 22-121 (121)
19 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.9E-17 4.2E-22 152.0 15.7 102 80-182 22-125 (126)
20 cd04013 C2_SynGAP_like C2 doma 99.8 1.7E-17 3.7E-22 155.5 15.6 125 15-186 9-145 (146)
21 cd08678 C2_C21orf25-like C2 do 99.7 3.5E-17 7.6E-22 150.1 15.0 105 80-184 18-124 (126)
22 cd08681 C2_fungal_Inn1p-like C 99.7 1.7E-17 3.7E-22 150.0 11.9 116 17-179 1-118 (118)
23 cd04022 C2A_MCTP_PRT_plant C2 99.7 3E-17 6.5E-22 150.7 13.2 119 18-180 1-126 (127)
24 cd04019 C2C_MCTP_PRT_plant C2 99.7 5.4E-17 1.2E-21 153.5 14.2 122 18-182 1-134 (150)
25 cd08378 C2B_MCTP_PRT_plant C2 99.7 1E-16 2.2E-21 146.2 13.1 98 80-180 17-120 (121)
26 cd08381 C2B_PI3K_class_II C2 d 99.7 7.3E-17 1.6E-21 147.3 12.1 107 10-159 6-121 (122)
27 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.3E-16 2.7E-21 147.4 13.1 120 18-180 1-133 (133)
28 cd08377 C2C_MCTP_PRT C2 domain 99.7 2.8E-16 6E-21 142.1 15.0 117 17-179 1-118 (119)
29 cd08376 C2B_MCTP_PRT C2 domain 99.7 3.9E-16 8.5E-21 140.7 15.7 113 18-180 1-115 (116)
30 cd08677 C2A_Synaptotagmin-13 C 99.7 5.8E-17 1.3E-21 146.1 10.0 103 12-159 9-118 (118)
31 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.6E-16 5.7E-21 143.4 14.1 117 19-178 2-120 (121)
32 cd04036 C2_cPLA2 C2 domain pre 99.7 2.9E-16 6.2E-21 142.5 14.1 113 19-179 2-117 (119)
33 cd04024 C2A_Synaptotagmin-like 99.7 2.6E-16 5.7E-21 144.0 13.7 120 17-179 1-128 (128)
34 cd04028 C2B_RIM1alpha C2 domai 99.7 2.1E-16 4.6E-21 148.4 13.2 108 12-161 24-138 (146)
35 cd04044 C2A_Tricalbin-like C2 99.7 2.5E-16 5.4E-21 143.3 13.2 120 17-181 2-124 (124)
36 cd04014 C2_PKC_epsilon C2 doma 99.7 7.3E-16 1.6E-20 142.4 15.1 127 15-182 2-131 (132)
37 cd08685 C2_RGS-like C2 domain 99.7 2.1E-16 4.5E-21 143.8 11.1 107 10-159 5-119 (119)
38 cd08391 C2A_C2C_Synaptotagmin_ 99.7 6.4E-16 1.4E-20 140.0 13.7 120 17-179 1-121 (121)
39 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 6.6E-16 1.4E-20 140.8 13.3 118 18-178 1-123 (123)
40 cd08375 C2_Intersectin C2 doma 99.7 1.5E-15 3.2E-20 141.4 14.8 118 14-180 12-136 (136)
41 cd08395 C2C_Munc13 C2 domain t 99.7 6.5E-16 1.4E-20 140.5 11.6 100 18-160 1-111 (120)
42 cd04046 C2_Calpain C2 domain p 99.7 2.7E-15 5.9E-20 137.6 15.9 122 16-182 2-124 (126)
43 cd08385 C2A_Synaptotagmin-1-5- 99.7 9.9E-16 2.2E-20 139.8 12.2 104 15-160 14-123 (124)
44 cd04029 C2A_SLP-4_5 C2 domain 99.6 1.1E-15 2.4E-20 140.2 11.9 103 15-159 13-124 (125)
45 cd08393 C2A_SLP-1_2 C2 domain 99.6 6.4E-16 1.4E-20 141.7 10.3 102 16-159 14-124 (125)
46 KOG1030 Predicted Ca2+-depende 99.6 5.5E-16 1.2E-20 145.4 9.5 97 14-153 3-100 (168)
47 cd08373 C2A_Ferlin C2 domain f 99.6 4.2E-15 9E-20 136.4 14.8 103 80-185 15-121 (127)
48 cd08387 C2A_Synaptotagmin-8 C2 99.6 1.6E-15 3.5E-20 138.5 11.1 103 15-159 14-122 (124)
49 cd08392 C2A_SLP-3 C2 domain fi 99.6 1.4E-15 3.1E-20 140.0 10.7 102 16-159 14-127 (128)
50 cd04010 C2B_RasA3 C2 domain se 99.6 2.3E-15 5E-20 142.0 11.7 83 80-162 19-123 (148)
51 cd08680 C2_Kibra C2 domain fou 99.6 1.8E-15 3.9E-20 138.5 10.4 103 15-159 12-124 (124)
52 cd08688 C2_KIAA0528-like C2 do 99.6 2.3E-15 4.9E-20 134.8 10.9 100 19-161 1-109 (110)
53 cd04050 C2B_Synaptotagmin-like 99.6 5.7E-15 1.2E-19 131.1 12.2 97 19-160 2-101 (105)
54 cd08394 C2A_Munc13 C2 domain f 99.6 7.3E-15 1.6E-19 133.9 13.0 97 17-160 2-100 (127)
55 cd04030 C2C_KIAA1228 C2 domain 99.6 5.8E-15 1.2E-19 135.1 12.4 106 12-159 9-126 (127)
56 cd04017 C2D_Ferlin C2 domain f 99.6 1.1E-14 2.4E-19 135.3 13.9 119 18-183 2-135 (135)
57 cd04043 C2_Munc13_fungal C2 do 99.6 1.5E-14 3.3E-19 132.2 14.6 114 18-181 2-122 (126)
58 cd04027 C2B_Munc13 C2 domain s 99.6 8.9E-15 1.9E-19 134.4 13.1 114 18-177 2-127 (127)
59 cd08521 C2A_SLP C2 domain firs 99.6 6.4E-15 1.4E-19 134.0 11.9 103 15-159 12-123 (123)
60 cd08382 C2_Smurf-like C2 domai 99.6 8.9E-15 1.9E-19 133.7 12.7 116 19-177 2-122 (123)
61 cd08407 C2B_Synaptotagmin-13 C 99.6 9.2E-16 2E-20 142.9 6.1 114 15-170 13-134 (138)
62 cd04031 C2A_RIM1alpha C2 domai 99.6 1E-14 2.3E-19 133.0 12.3 101 16-159 15-124 (125)
63 cd08389 C2A_Synaptotagmin-14_1 99.6 8.7E-15 1.9E-19 134.0 11.8 105 12-159 9-122 (124)
64 cd08406 C2B_Synaptotagmin-12 C 99.6 1.3E-15 2.9E-20 141.7 6.4 111 15-169 13-131 (136)
65 cd04051 C2_SRC2_like C2 domain 99.6 7.5E-15 1.6E-19 134.2 10.8 113 18-175 1-125 (125)
66 cd00138 PLDc Phospholipase D. 99.6 2.3E-14 4.9E-19 138.3 14.7 145 241-459 20-169 (176)
67 cd08383 C2A_RasGAP C2 domain ( 99.6 2.4E-14 5.2E-19 128.9 13.7 96 80-179 18-117 (117)
68 cd04045 C2C_Tricalbin-like C2 99.6 1.2E-14 2.7E-19 132.3 11.8 104 17-163 1-105 (120)
69 cd04041 C2A_fungal C2 domain f 99.6 6E-15 1.3E-19 132.3 9.3 98 17-159 1-106 (111)
70 cd08690 C2_Freud-1 C2 domain f 99.6 2.9E-14 6.3E-19 135.0 14.4 99 80-181 25-138 (155)
71 cd08388 C2A_Synaptotagmin-4-11 99.6 1.7E-14 3.6E-19 132.9 12.2 102 16-159 15-126 (128)
72 PRK12452 cardiolipin synthetas 99.6 7.1E-15 1.5E-19 164.7 10.3 155 226-461 328-482 (509)
73 cd08386 C2A_Synaptotagmin-7 C2 99.6 2.1E-14 4.6E-19 131.1 11.5 102 16-159 15-123 (125)
74 cd08384 C2B_Rabphilin_Doc2 C2 99.6 3.8E-15 8.3E-20 137.7 6.5 109 15-167 11-127 (133)
75 KOG1028 Ca2+-dependent phospho 99.6 2.3E-14 4.9E-19 156.8 13.5 132 13-186 163-300 (421)
76 TIGR03705 poly_P_kin polyphosp 99.6 1.7E-13 3.7E-18 156.2 20.7 203 242-625 339-554 (672)
77 PHA03003 palmytilated EEV memb 99.6 3E-14 6.5E-19 153.9 13.6 158 231-459 201-363 (369)
78 cd08692 C2B_Tac2-N C2 domain s 99.5 6.8E-15 1.5E-19 135.8 7.0 114 11-167 8-129 (135)
79 cd04040 C2D_Tricalbin-like C2 99.5 6.3E-14 1.4E-18 126.0 12.9 102 19-162 1-104 (115)
80 cd08404 C2B_Synaptotagmin-4 C2 99.5 8.4E-15 1.8E-19 136.1 7.3 109 15-167 13-129 (136)
81 PRK05443 polyphosphate kinase; 99.5 2.7E-13 5.9E-18 155.4 20.8 206 242-625 348-563 (691)
82 cd04039 C2_PSD C2 domain prese 99.5 3.8E-14 8.3E-19 126.7 10.9 96 17-151 1-99 (108)
83 cd08390 C2A_Synaptotagmin-15-1 99.5 4E-14 8.6E-19 128.8 11.0 102 16-159 13-121 (123)
84 cd04018 C2C_Ferlin C2 domain t 99.5 5.2E-14 1.1E-18 133.1 11.7 117 18-163 1-127 (151)
85 cd04052 C2B_Tricalbin-like C2 99.5 7.2E-14 1.6E-18 125.3 11.9 99 78-182 11-111 (111)
86 cd04049 C2_putative_Elicitor-r 99.5 5.4E-14 1.2E-18 128.4 11.3 100 17-159 1-106 (124)
87 cd04011 C2B_Ferlin C2 domain s 99.5 7E-14 1.5E-18 125.3 11.3 81 80-161 21-110 (111)
88 cd08405 C2B_Synaptotagmin-7 C2 99.5 1.7E-14 3.6E-19 134.0 7.0 110 15-168 13-130 (136)
89 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 8.5E-14 1.9E-18 133.4 11.9 103 15-159 25-136 (162)
90 cd08402 C2B_Synaptotagmin-1 C2 99.5 1E-14 2.2E-19 135.5 5.2 110 15-168 13-130 (136)
91 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.6E-14 3.4E-19 133.9 6.2 112 12-167 9-128 (134)
92 cd08409 C2B_Synaptotagmin-15 C 99.5 1.8E-14 3.9E-19 134.3 5.9 108 16-166 14-129 (137)
93 cd08676 C2A_Munc13-like C2 dom 99.5 8.6E-14 1.9E-18 131.9 10.5 102 12-159 23-153 (153)
94 cd04026 C2_PKC_alpha_gamma C2 99.5 1.4E-13 3E-18 126.9 11.5 110 10-162 6-122 (131)
95 cd08410 C2B_Synaptotagmin-17 C 99.5 3.2E-14 6.9E-19 132.2 7.1 109 15-167 12-129 (135)
96 cd08675 C2B_RasGAP C2 domain s 99.5 1.2E-13 2.5E-18 128.8 10.9 101 19-162 1-121 (137)
97 cd08408 C2B_Synaptotagmin-14_1 99.5 3E-14 6.4E-19 133.0 6.8 110 15-167 13-131 (138)
98 KOG0696 Serine/threonine prote 99.5 1.3E-14 2.9E-19 151.7 4.8 108 12-162 175-289 (683)
99 PRK13912 nuclease NucT; Provis 99.5 5.2E-13 1.1E-17 129.8 15.7 142 241-460 32-175 (177)
100 cd00276 C2B_Synaptotagmin C2 d 99.5 3.7E-14 8.1E-19 130.7 6.9 107 16-166 13-127 (134)
101 cd04038 C2_ArfGAP C2 domain pr 99.5 2.4E-13 5.3E-18 127.8 11.6 91 17-151 2-93 (145)
102 cd04021 C2_E3_ubiquitin_ligase 99.5 5.5E-13 1.2E-17 122.3 13.5 97 80-177 22-124 (125)
103 cd00275 C2_PLC_like C2 domain 99.5 7.8E-13 1.7E-17 120.9 13.9 116 18-179 3-127 (128)
104 cd04009 C2B_Munc13-like C2 dom 99.5 3.8E-13 8.3E-18 124.6 11.2 92 17-150 16-119 (133)
105 cd08691 C2_NEDL1-like C2 domai 99.5 1.2E-12 2.6E-17 121.9 14.2 115 18-177 2-136 (137)
106 cd04032 C2_Perforin C2 domain 99.5 4.3E-13 9.3E-18 123.3 10.8 94 11-148 22-118 (127)
107 PLN03200 cellulose synthase-in 99.4 4.4E-13 9.6E-18 165.4 11.0 124 10-181 1973-2101(2102)
108 cd04048 C2A_Copine C2 domain f 99.4 2.1E-12 4.6E-17 117.3 11.3 80 80-159 21-112 (120)
109 KOG2059 Ras GTPase-activating 99.4 7.3E-13 1.6E-17 145.9 9.4 133 17-193 5-138 (800)
110 cd04037 C2E_Ferlin C2 domain f 99.4 1.6E-12 3.5E-17 119.0 9.9 117 18-181 1-120 (124)
111 cd04035 C2A_Rabphilin_Doc2 C2 99.4 3.1E-12 6.8E-17 116.6 11.6 102 15-158 13-122 (123)
112 cd08686 C2_ABR C2 domain in th 99.4 8.9E-12 1.9E-16 112.3 12.9 79 80-159 15-107 (118)
113 PRK01642 cls cardiolipin synth 99.3 3.6E-12 7.7E-17 142.6 11.4 154 226-461 302-456 (483)
114 PF13091 PLDc_2: PLD-like doma 99.2 9.5E-11 2.1E-15 106.6 11.1 124 247-456 1-126 (126)
115 PRK11263 cardiolipin synthase 99.2 6.2E-11 1.3E-15 129.6 11.5 152 227-460 191-343 (411)
116 cd04047 C2B_Copine C2 domain s 99.2 7.7E-11 1.7E-15 105.1 9.9 69 80-149 21-100 (110)
117 PF00168 C2: C2 domain; Inter 99.2 1.2E-10 2.5E-15 97.6 8.5 81 19-141 1-85 (85)
118 cd00030 C2 C2 domain. The C2 d 99.1 4.6E-10 1E-14 95.4 10.2 80 80-159 20-102 (102)
119 KOG1028 Ca2+-dependent phospho 99.1 1.4E-10 3E-15 127.1 6.5 115 12-170 293-415 (421)
120 smart00239 C2 Protein kinase C 99.0 1.1E-09 2.4E-14 93.7 9.9 73 80-152 21-97 (101)
121 KOG1031 Predicted Ca2+-depende 99.0 6.6E-10 1.4E-14 119.8 9.5 167 15-240 1-185 (1169)
122 PHA02820 phospholipase-D-like 99.0 3.6E-09 7.7E-14 116.3 13.4 154 244-459 220-380 (424)
123 cd08374 C2F_Ferlin C2 domain s 99.0 2.3E-09 5.1E-14 99.0 9.6 72 80-151 25-125 (133)
124 KOG1011 Neurotransmitter relea 99.0 8.2E-10 1.8E-14 120.3 7.1 124 15-184 293-428 (1283)
125 PLN02223 phosphoinositide phos 99.0 7.1E-09 1.5E-13 114.6 14.1 96 80-179 435-536 (537)
126 COG5038 Ca2+-dependent lipid-b 99.0 1.9E-09 4.2E-14 125.3 10.1 126 14-183 1037-1164(1227)
127 COG5038 Ca2+-dependent lipid-b 98.9 4.9E-09 1.1E-13 122.0 12.4 136 14-193 433-570 (1227)
128 PLN02952 phosphoinositide phos 98.9 1.8E-08 3.8E-13 113.6 14.4 95 80-178 497-597 (599)
129 PLN02230 phosphoinositide phos 98.8 4.6E-08 1E-12 110.1 13.5 96 80-179 496-597 (598)
130 KOG3603 Predicted phospholipas 98.8 7.8E-07 1.7E-11 94.7 21.6 254 243-626 73-333 (456)
131 PLN02222 phosphoinositide phos 98.7 1.5E-07 3.1E-12 106.0 14.0 96 80-179 479-580 (581)
132 PLN02228 Phosphoinositide phos 98.7 2.1E-07 4.5E-12 104.5 14.7 99 80-182 458-563 (567)
133 cd08689 C2_fungal_Pkc1p C2 dom 98.7 8E-08 1.7E-12 84.3 8.8 66 80-149 23-88 (109)
134 COG1502 Cls Phosphatidylserine 98.7 7.6E-08 1.7E-12 106.3 11.0 152 230-461 254-411 (438)
135 KOG3603 Predicted phospholipas 98.6 3.4E-07 7.4E-12 97.4 13.9 170 231-461 269-441 (456)
136 KOG0169 Phosphoinositide-speci 98.6 1.3E-07 2.8E-12 106.8 11.3 98 80-181 641-745 (746)
137 PF00614 PLDc: Phospholipase D 98.6 9.2E-09 2E-13 68.7 0.3 26 363-396 2-27 (28)
138 KOG1328 Synaptic vesicle prote 98.6 1.4E-08 3.1E-13 112.3 1.5 95 94-190 179-311 (1103)
139 KOG1328 Synaptic vesicle prote 98.5 2.8E-08 6E-13 110.1 2.3 91 16-148 946-1048(1103)
140 KOG1264 Phospholipase C [Lipid 98.5 7.4E-07 1.6E-11 100.1 10.5 103 80-186 1085-1195(1267)
141 KOG0905 Phosphoinositide 3-kin 98.2 1E-06 2.2E-11 102.3 5.1 109 9-159 1516-1633(1639)
142 PRK09428 pssA phosphatidylseri 98.1 2.2E-05 4.8E-10 87.0 13.2 141 241-458 250-407 (451)
143 KOG2059 Ras GTPase-activating 98.0 9.7E-06 2.1E-10 90.7 6.4 104 80-183 151-279 (800)
144 cd08683 C2_C2cd3 C2 domain fou 97.9 1.1E-05 2.4E-10 73.1 4.3 80 80-159 33-143 (143)
145 PF07894 DUF1669: Protein of u 97.8 0.00018 3.8E-09 74.3 11.0 139 241-457 133-279 (284)
146 smart00155 PLDc Phospholipase 97.6 5.3E-05 1.2E-09 50.7 3.0 24 364-395 3-26 (28)
147 KOG1013 Synaptic vesicle prote 97.5 0.00011 2.5E-09 76.0 5.1 103 16-162 232-342 (362)
148 KOG2060 Rab3 effector RIM1 and 97.5 0.00017 3.7E-09 75.9 5.8 109 16-165 268-383 (405)
149 KOG1013 Synaptic vesicle prote 97.3 7.3E-05 1.6E-09 77.4 0.6 129 16-186 92-235 (362)
150 PF13918 PLDc_3: PLD-like doma 97.3 0.0012 2.6E-08 63.8 8.5 69 227-305 71-140 (177)
151 TIGR03705 poly_P_kin polyphosp 97.2 0.0017 3.6E-08 75.2 10.6 145 230-461 492-642 (672)
152 KOG1011 Neurotransmitter relea 97.1 0.0012 2.7E-08 73.2 8.3 80 80-159 1145-1235(1283)
153 PRK05443 polyphosphate kinase; 97.1 0.0024 5.2E-08 74.3 10.5 142 234-462 505-651 (691)
154 KOG1326 Membrane-associated pr 97.0 0.00037 8E-09 81.0 3.2 88 16-145 612-702 (1105)
155 PF13090 PP_kinase_C: Polyphos 97.0 0.019 4E-07 60.9 15.5 138 242-455 18-161 (352)
156 KOG3837 Uncharacterized conser 97.0 0.00045 9.7E-09 73.4 3.5 98 80-180 388-503 (523)
157 cd00138 PLDc Phospholipase D. 97.0 0.0013 2.7E-08 63.2 6.3 55 559-625 19-73 (176)
158 COG0855 Ppk Polyphosphate kina 97.0 0.05 1.1E-06 61.6 18.8 136 242-453 352-493 (696)
159 PLN02964 phosphatidylserine de 96.8 0.0021 4.5E-08 73.9 6.9 86 80-165 68-157 (644)
160 PRK13912 nuclease NucT; Provis 96.6 0.0045 9.8E-08 60.2 6.6 48 560-625 32-79 (177)
161 COG3886 Predicted HKD family n 96.4 0.052 1.1E-06 52.7 11.9 144 241-461 38-183 (198)
162 cd08684 C2A_Tac2-N C2 domain f 96.3 0.0032 6.9E-08 53.7 2.7 77 80-158 21-102 (103)
163 KOG1326 Membrane-associated pr 96.2 0.00089 1.9E-08 77.9 -1.1 102 16-161 205-317 (1105)
164 KOG1265 Phospholipase C [Lipid 95.9 0.036 7.8E-07 64.2 9.8 100 15-166 701-810 (1189)
165 PF11495 Regulator_TrmB: Archa 95.5 0.055 1.2E-06 55.0 8.7 50 241-307 9-58 (233)
166 PF13091 PLDc_2: PLD-like doma 95.5 0.028 6E-07 50.6 5.8 42 566-625 1-42 (126)
167 PF12416 DUF3668: Cep120 prote 95.3 0.19 4.2E-06 53.8 12.1 104 80-184 18-136 (340)
168 PLN02352 phospholipase D epsil 95.2 0.043 9.4E-07 64.0 7.3 62 241-305 452-519 (758)
169 PLN03008 Phospholipase D delta 94.8 0.034 7.3E-07 65.2 5.2 73 230-305 554-633 (868)
170 PLN02270 phospholipase D alpha 94.8 0.057 1.2E-06 63.2 6.9 149 241-399 498-683 (808)
171 KOG1327 Copine [Signal transdu 94.8 0.054 1.2E-06 60.5 6.3 83 80-164 157-250 (529)
172 PF10358 NT-C2: N-terminal C2 94.5 1.2 2.7E-05 41.2 14.0 103 80-186 24-141 (143)
173 KOG1329 Phospholipase D1 [Lipi 94.1 0.16 3.5E-06 59.5 8.5 140 241-400 565-728 (887)
174 PF13918 PLDc_3: PLD-like doma 93.8 0.64 1.4E-05 45.2 10.8 59 561-626 82-141 (177)
175 PF15627 CEP76-C2: CEP76 C2 do 93.8 0.69 1.5E-05 44.0 10.7 98 85-183 39-153 (156)
176 cd08398 C2_PI3K_class_I_alpha 91.9 3.1 6.8E-05 39.8 12.4 66 80-146 26-105 (158)
177 cd08687 C2_PKN-like C2 domain 90.0 2 4.3E-05 37.2 8.0 85 79-179 8-92 (98)
178 KOG3964 Phosphatidylglycerolph 89.4 0.37 8.1E-06 51.7 4.0 130 241-402 38-174 (469)
179 PF15625 CC2D2AN-C2: CC2D2A N- 88.5 1.3 2.7E-05 42.9 6.7 76 73-148 30-107 (168)
180 cd08693 C2_PI3K_class_I_beta_d 88.3 2.5 5.5E-05 41.0 8.7 51 80-130 27-86 (173)
181 PLN02866 phospholipase D 88.0 1 2.2E-05 54.4 6.8 61 560-625 343-403 (1068)
182 cd08380 C2_PI3K_like C2 domain 84.5 3.7 8.1E-05 38.8 7.6 68 80-147 28-107 (156)
183 PF14429 DOCK-C2: C2 domain in 83.9 4 8.8E-05 39.8 7.7 55 92-146 59-120 (184)
184 cd08397 C2_PI3K_class_III C2 d 83.3 3.2 7E-05 39.7 6.5 68 79-146 29-106 (159)
185 PF11618 DUF3250: Protein of u 82.8 11 0.00023 33.8 9.2 94 83-180 2-105 (107)
186 KOG1452 Predicted Rho GTPase-a 80.4 5.2 0.00011 42.0 7.1 127 7-181 41-168 (442)
187 cd08695 C2_Dock-B C2 domains f 79.6 4.3 9.2E-05 40.0 6.0 54 91-144 52-111 (189)
188 PF00792 PI3K_C2: Phosphoinosi 79.2 13 0.00029 34.5 9.1 67 81-147 3-85 (142)
189 cd08694 C2_Dock-A C2 domains f 78.3 6.6 0.00014 38.8 6.9 55 91-145 52-114 (196)
190 cd08399 C2_PI3K_class_I_gamma 75.8 18 0.0004 35.3 9.1 101 81-185 31-143 (178)
191 cd08697 C2_Dock-D C2 domains f 72.1 17 0.00038 35.7 8.0 40 91-130 55-97 (185)
192 cd04012 C2A_PI3K_class_II C2 d 67.3 17 0.00037 35.1 6.8 67 80-146 29-118 (171)
193 cd08696 C2_Dock-C C2 domains f 65.1 14 0.00031 36.0 5.8 54 92-145 54-117 (179)
194 smart00142 PI3K_C2 Phosphoinos 60.0 61 0.0013 28.2 8.4 50 80-129 32-90 (100)
195 cd08679 C2_DOCK180_related C2 59.7 20 0.00044 34.8 5.8 52 94-146 55-115 (178)
196 KOG3964 Phosphatidylglycerolph 55.4 19 0.00041 39.2 5.0 51 561-627 39-89 (469)
197 KOG4269 Rac GTPase-activating 50.4 52 0.0011 39.4 7.8 203 11-309 753-972 (1112)
198 cd05137 RasGAP_CLA2_BUD2 CLA2/ 48.6 22 0.00047 39.2 4.4 49 136-186 1-50 (395)
199 KOG1327 Copine [Signal transdu 48.5 21 0.00045 40.5 4.2 85 91-178 40-130 (529)
200 PF13090 PP_kinase_C: Polyphos 46.1 76 0.0017 34.2 7.8 134 241-461 182-320 (352)
201 KOG0694 Serine/threonine prote 45.1 9.9 0.00022 44.0 1.1 96 80-184 28-125 (694)
202 PTZ00447 apical membrane antig 37.9 3.5E+02 0.0076 29.3 10.9 94 80-178 74-171 (508)
203 PF06219 DUF1005: Protein of u 31.2 5.4E+02 0.012 28.6 11.3 61 120-181 95-168 (460)
204 PF10409 PTEN_C2: C2 domain of 27.2 4.7E+02 0.01 23.6 10.6 68 80-148 25-98 (134)
205 cd03413 CbiK_C Anaerobic cobal 24.3 4.5E+02 0.0098 23.0 8.0 78 241-342 15-96 (103)
206 COG1553 DsrE Uncharacterized c 24.3 3.2E+02 0.0069 25.2 7.0 74 230-305 4-79 (126)
207 KOG1467 Translation initiation 23.8 1.3E+02 0.0029 33.8 5.3 46 285-343 370-415 (556)
208 PF14924 DUF4497: Protein of u 22.6 2.2E+02 0.0048 25.3 5.7 59 120-181 29-105 (112)
209 PF07894 DUF1669: Protein of u 20.7 2E+02 0.0043 30.3 5.6 48 560-627 133-181 (284)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=3.5e-107 Score=910.53 Aligned_cols=620 Identities=73% Similarity=1.214 Sum_probs=543.5
Q ss_pred CCCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEE
Q 006854 6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT 85 (628)
Q Consensus 6 ~~~~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~ 85 (628)
+.-+.++.++||+|.|+|++|++||+||..+++++.+|..+..|...+.+..-.....+..+.+++-..++.+++||||+
T Consensus 3 ~~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~ 82 (868)
T PLN03008 3 EKVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVT 82 (868)
T ss_pred cccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEE
Confidence 34578899999999999999999999999999899999876766654332222222333333345556777889999999
Q ss_pred EEECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854 86 VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (628)
Q Consensus 86 v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~ 165 (628)
|.++..++.||+|++++.||+|||+|.|.+.++...|+|+|||+|.+++++||.+.||++++..|+..+.|++|.+..++
T Consensus 83 I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~k 162 (868)
T PLN03008 83 VVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGK 162 (868)
T ss_pred EEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCC
Confidence 99988778899999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEeecCCCCccccccCCCCCCCCccCccccCCCCCceeEeecccccCCCCCceecCCCCccCCcchHH
Q 006854 166 PPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWE 245 (628)
Q Consensus 166 ~~~~~g~i~l~l~y~p~~~~~~~~~gv~~~p~~~~~~~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~ 245 (628)
+.+..++|+++|+|.|....+.|..|++++|++.+++.++||.+.|++|++|+|+++++|+.|.+.|.+|..|++..||+
T Consensus 163 p~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwe 242 (868)
T PLN03008 163 PPKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWE 242 (868)
T ss_pred CCCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccC
Q 006854 246 DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMAT 325 (628)
Q Consensus 246 ~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~ 325 (628)
+++.||.+|+++|||.+|+++|.++|+|++.. |.+...+|.++|++||++||+|.||+||+..|....+++..|+|.+
T Consensus 243 di~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~--~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~t 320 (868)
T PLN03008 243 DICYAISEAHHMIYIVGWSIFHKIKLVRETKV--PRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGT 320 (868)
T ss_pred HHHHHHHhhhheEEEeceeecceeEEecCCCC--CCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccc
Confidence 99999999999999999999999999998752 2223589999999999999999999999999886677888999999
Q ss_pred ChHHHHhhhccCCceEEeccCCCCCccchhhhc-----------cccccccCcceEEEEecCCCCCCcceEEEEccccCC
Q 006854 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (628)
Q Consensus 326 ~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~-----------~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~ 394 (628)
|++++.+.+++.+|.|.++|+++....+++++. .....++||||+||||+++++.+++++|||||+||+
T Consensus 321 hdeet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc 400 (868)
T PLN03008 321 HDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLC 400 (868)
T ss_pred ccHHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceecc
Confidence 999999999999999999998877766666542 234679999999999998777889999999999999
Q ss_pred CCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccchhhhhhccccc
Q 006854 395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH 474 (628)
Q Consensus 395 ~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~ 474 (628)
++||||+.|++++++++.+.+||+||++.++.+.+++||||+|++|+||+|.+|+.+|.+||+++++.+..-...++...
T Consensus 401 ~gRwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~ 480 (868)
T PLN03008 401 DGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTH 480 (868)
T ss_pred CCccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccc
Confidence 99999999999999999999999999987777788899999999999999999999999999999885311112234456
Q ss_pred ccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhcccccccc
Q 006854 475 WRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAK 554 (628)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~ 554 (628)
|.++.|+.+.++++++.|......++....+...+.+...+..++++|.+|++||++.++++++|..+++++..+|++++
T Consensus 481 ~~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk 560 (868)
T PLN03008 481 WQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAK 560 (868)
T ss_pred cccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccc
Confidence 78899999999999887654322222222222111111111245688999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEEe
Q 006854 555 DVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRC 627 (628)
Q Consensus 555 ~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~~ 627 (628)
+...|+||++||++||++||||||||||||++..++|+++++.++.|+|++||+++|+++++++++|+||||+
T Consensus 561 ~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 561 RLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred ccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=1.1e-94 Score=810.75 Aligned_cols=555 Identities=47% Similarity=0.826 Sum_probs=486.1
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccc-cCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACD-VCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (628)
Q Consensus 12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~ 90 (628)
..++||+|+|+|++|++|++++. ...++.++..+. .|+.. .+++||||+|.+++
T Consensus 3 ~~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~~------------------------~~~~~~y~tv~~~~ 57 (808)
T PLN02270 3 QILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGVG------------------------KGESQLYATIDLEK 57 (808)
T ss_pred ceeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccCC------------------------CCCCCceEEEEeCC
Confidence 35999999999999999998644 444444443222 11111 13599999999999
Q ss_pred eeeeeeccccCC-CCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCC
Q 006854 91 ATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (628)
Q Consensus 91 ~~~~kT~v~~~~-~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~ 169 (628)
..+.||+++.+. .||.|||+|.+++.+..+.|.|+|+|.|.++..+||.+.||+.+|..|+.+++||++++..+++.+.
T Consensus 58 a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~ 137 (808)
T PLN02270 58 ARVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHG 137 (808)
T ss_pred cEEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCC
Confidence 999999999884 6999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CceEEEEEEEeecCCCCccccccCCCCCCCCccCccccCCCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHH
Q 006854 170 GASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249 (628)
Q Consensus 170 ~g~i~l~l~y~p~~~~~~~~~gv~~~p~~~~~~~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~ 249 (628)
..+|+++|+|.|.+.++.|..|+++ +++.+++.++||.+.|++|++|+|+++.+|+.|.+.|.+|..|++..||+++++
T Consensus 138 ~~~~~~~~~f~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~ 216 (808)
T PLN02270 138 GSKIHVKLQYFEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFD 216 (808)
T ss_pred CCEEEEEEEEEEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHH
Confidence 8899999999999999999999976 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHH
Q 006854 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEE 329 (628)
Q Consensus 250 aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~ 329 (628)
||.+||++|||++|.|++.++|+|++..++|.| ..+|.++|++||++||+|+||+||+..+.. .++..|+|.+|+++
T Consensus 217 AI~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~~-~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~--~~k~~g~m~thd~~ 293 (808)
T PLN02270 217 AITNAKHLIYITGWSVYTEISLVRDSRRPKPGG-DVTIGELLKKKASEGVRVLLLVWDDRTSVD--LLKKDGLMATHDEE 293 (808)
T ss_pred HHHhhhcEEEEEEeecCCCceEecCCCCCCCCC-cchHHHHHHHHhcCCCEEEEEEEcCcccch--hhccccccccCHHH
Confidence 999999999999999999999999765444443 579999999999999999999999987653 24567889999999
Q ss_pred HHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCC---CCCCcceEEEEccccCCCCCCCCCCCCCc
Q 006854 330 TKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA---SGNNRKITAFIGGIDLCDGRYDTPEHRLF 406 (628)
Q Consensus 330 ~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~---~~~~~~~vafvGG~ni~~~r~d~~~H~~~ 406 (628)
+.+++++.+|+|++++++|+.+..++++......++||||+||||++. .+++++.+|||||+||+++||||+.|+++
T Consensus 294 t~~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf 373 (808)
T PLN02270 294 TENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLF 373 (808)
T ss_pred HHHHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCcccccc
Confidence 999999999999999999876655665556677899999999999973 34678999999999999999999999999
Q ss_pred cCCcccccCCCCCCCCCC---CCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccchhhc
Q 006854 407 RDLDTVFKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKI 483 (628)
Q Consensus 407 ~~~~~~~~~~~~n~~~~~---~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (628)
+++++.+.+||+||.|.+ +.+.+++||||+|++|+||+|.+|+.+|.+||+.+++.. .++..
T Consensus 374 ~~Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~---------------ll~~~ 438 (808)
T PLN02270 374 RTLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKD---------------ILVQL 438 (808)
T ss_pred ccccccccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCcc---------------chhhh
Confidence 999999999999998864 566789999999999999999999999999999988763 11222
Q ss_pred cccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCcchhhHHH
Q 006854 484 GRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQ 563 (628)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~ 563 (628)
+++.++..|.. + .++ +.+.++|.+|++||++.+..+++|..+++++.+|++++++...+++|+
T Consensus 439 ~~~~~~~~P~~----------~--~~~-----p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~ 501 (808)
T PLN02270 439 RELEDVIIPPS----------P--VMF-----PDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQ 501 (808)
T ss_pred cccccccCCCC----------c--ccC-----CCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHH
Confidence 22322221111 0 001 234578999999999999999999999998889999999888899999
Q ss_pred HHHHHHHHhccceEEEeecccccccCCCCCc----cCCCCCChhHHHHHHHHHHHHHcCCceEEEEEe
Q 006854 564 TAYIQAIRSAQHFIYIENQYFLGSSYAWPSY----KNAGADNLIPMELALKIASKIRANERFAVARRC 627 (628)
Q Consensus 564 ~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~----~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~~ 627 (628)
.+|+.||++|+||||||||||++..++|+++ ++.++.|+|++||+++|+++++++++|+||||+
T Consensus 502 ~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 502 DAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred HHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 9999999999999999999999999999877 888999999999999999999999999999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=1.4e-87 Score=752.58 Aligned_cols=508 Identities=43% Similarity=0.740 Sum_probs=430.7
Q ss_pred eeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (628)
Q Consensus 11 ~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~ 90 (628)
+--++||+|+++|.+|+ | ++.++.....|..+ .||||+|.++.
T Consensus 4 ~~~~lhg~l~~~i~~~~--~--------~~~~~~~~~~~~~~---------------------------~~~y~tv~~~~ 46 (758)
T PLN02352 4 KQKFFHGTLEATIFDAT--P--------YTPPFPFNCIFLNG---------------------------KATYVTIKIGN 46 (758)
T ss_pred cccccccceEEEEEEee--e--------hhhcccccccccCC---------------------------CCceEEEEeCC
Confidence 34689999999999999 2 33344333333322 59999999999
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCCCeeeEEEeccccccccCce-eEEEEEccCCCCCCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGEL-ISRWYDIIAPSGSPPK 168 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~ 168 (628)
..+.|| .+..||.|+|+|.+++.+.. +.|.|+|+| +..+||.+.||+.+|..|+. +++||++++..+++..
T Consensus 47 ~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~ 119 (758)
T PLN02352 47 KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNP 119 (758)
T ss_pred cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCC
Confidence 999999 56679999999999999988 789999998 47899999999999999866 9999999999999875
Q ss_pred CCceEEEEEEEeecCCCCccccccCCCCCCCCccCccccCCCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHH
Q 006854 169 PGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDIC 248 (628)
Q Consensus 169 ~~g~i~l~l~y~p~~~~~~~~~gv~~~p~~~~~~~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~ 248 (628)
. .+|+++|+|.|.++++.|..|+.+ +++.+++.++||.+.|++|++|+|+++.+|+.|.+.| -|...++|++|+
T Consensus 120 ~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~ 193 (758)
T PLN02352 120 E-LKLRFMLWFRPAELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVY 193 (758)
T ss_pred C-CEEEEEEEEEEhhhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHH
Confidence 4 799999999999999999999977 6999999999999999999999999999999999988 455578999999
Q ss_pred HHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChH
Q 006854 249 HAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDE 328 (628)
Q Consensus 249 ~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~ 328 (628)
+||.+||++|+|++|+|+++++|+|++..+.|.+.+.+|.++|++||++||+||||+||+.++... ++..|+|.++++
T Consensus 194 eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~ 271 (758)
T PLN02352 194 KAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDE 271 (758)
T ss_pred HHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchH
Confidence 999999999999999999999999987543333335899999999999999999999999887643 466778888899
Q ss_pred HHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCC--CCCcceEEEEccccCCCCCCCCCCCCCc
Q 006854 329 ETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQAS--GNNRKITAFIGGIDLCDGRYDTPEHRLF 406 (628)
Q Consensus 329 ~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~--~~~~~~vafvGG~ni~~~r~d~~~H~~~ 406 (628)
+..+++++.+|.|.+.|.++. .....++||||+||||+..+ +..++.+|||||+|||++||||++|+++
T Consensus 272 ~~~~~f~h~~V~~~l~pr~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~ 342 (758)
T PLN02352 272 DAFAYFKHTKVVCKLCPRLHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLF 342 (758)
T ss_pred HHHhhccCCceEEeecccccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcc
Confidence 999999999999998776543 22467999999999999732 3678889999999999999999999999
Q ss_pred cCCccc-ccCCCCCCCCC---CCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccchhh
Q 006854 407 RDLDTV-FKDDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIK 482 (628)
Q Consensus 407 ~~~~~~-~~~~~~n~~~~---~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (628)
+++++. +.+||+|+.+. .+.+.+++||||+||+|+||||+||..+|.+||+++++.. .++.
T Consensus 343 d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~---------------~l~p 407 (758)
T PLN02352 343 RTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS---------------VLVP 407 (758)
T ss_pred cccccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc---------------ccCC
Confidence 998875 56899998875 2556789999999999999999999999999999988753 0111
Q ss_pred ccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCcchhhHH
Q 006854 483 IGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSI 562 (628)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I 562 (628)
..+..++.. +|+ .+ ..+.++|.+|++||.+.++.+++|. +...|+||
T Consensus 408 ~~~~~~~~~------------~p~---~~----~~~~~~w~VQv~RSid~~sa~~~P~--------------~~~~erSI 454 (758)
T PLN02352 408 TSSIRNLVH------------QPG---SS----ESNNRNWKVQVYRSIDHVSASHMPR--------------NLPVERSI 454 (758)
T ss_pred ccccccccc------------CCC---CC----cccCCcccceEEEecCccccccCCC--------------CCchhhHH
Confidence 111111110 111 00 1245789999999998877777764 23458999
Q ss_pred HHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEEe
Q 006854 563 QTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRC 627 (628)
Q Consensus 563 ~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~~ 627 (628)
+++|++||++||||||||||||++.++.|+++++.++.|+|+++|+++|++|++++++|+||||+
T Consensus 455 q~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 455 HEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred HHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-76 Score=659.03 Aligned_cols=554 Identities=40% Similarity=0.645 Sum_probs=461.2
Q ss_pred CCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEE
Q 006854 7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV 86 (628)
Q Consensus 7 ~~~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v 86 (628)
+.+..+.+.||+|.++|..+..++.+.....+.+..+..+..|......-+-..+.+|.+.++ .++-+...+.++|+++
T Consensus 66 ~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~e~Ylt~ 144 (887)
T KOG1329|consen 66 SGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSL-NSSMEKRKTLENYLTV 144 (887)
T ss_pred CcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCc-ccchhhhhhccchhee
Confidence 456678999999999999999999877666555444444433222211111111233333221 1122333458999999
Q ss_pred EECCeeeeeeccccCC-CCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCC
Q 006854 87 VVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (628)
Q Consensus 87 ~l~~~~~~kT~v~~~~-~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~ 164 (628)
.+......+|....+. .+|.|.+.|.+...+....+.+++.+.+..+ ...+|.+.+|+..+..+....+|+++...++
T Consensus 145 ~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 145 VLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDG 224 (887)
T ss_pred eechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCC
Confidence 9998777899999887 8999999999999988889999999999999 9999999999999999999999999999988
Q ss_pred CCCCCCceEEEEEEEeecCCCCccccccCCCCCCCCccCccccCCCCCceeEeecccccCCCCCceecCCCC-ccCCcch
Q 006854 165 SPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK-LYKPGTC 243 (628)
Q Consensus 165 ~~~~~~g~i~l~l~y~p~~~~~~~~~gv~~~p~~~~~~~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~-~y~~~~~ 243 (628)
++......+.+++.|.+......+..+..+.+++.+.+.+.++...+..+++|.+.+.-+++.|++.+..|+ -|.+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~ 304 (887)
T KOG1329|consen 225 KPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKY 304 (887)
T ss_pred ccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhH
Confidence 887777789999999999999999999999999999999999999999999999999999999999999999 7888999
Q ss_pred HHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcc
Q 006854 244 WEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVM 323 (628)
Q Consensus 244 f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~ 323 (628)
|++++.||.+|++.|||++|++.|+++|+|+...+ ...+|.++|++||++||+|+||+||+..+... +
T Consensus 305 ~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~--------i 372 (887)
T KOG1329|consen 305 WEDVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG--------I 372 (887)
T ss_pred HHHHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc--------c
Confidence 99999999999999999999999999999987632 35899999999999999999999999977542 3
Q ss_pred cCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCC
Q 006854 324 ATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEH 403 (628)
Q Consensus 324 ~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H 403 (628)
+++.++...++++++|+|+.+|.++.++. ...|+||||+||||.+ +||+||+|||+|||||++|
T Consensus 373 ~S~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH 436 (887)
T KOG1329|consen 373 NSHYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEH 436 (887)
T ss_pred CchhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCccc
Confidence 35678888889999999998888766421 2578999999999998 9999999999999999999
Q ss_pred CCccCCcccccCCCCCCCCC-----CCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccchhhhhhccccccccc
Q 006854 404 RLFRDLDTVFKDDFHNPTYP-----IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (628)
Q Consensus 404 ~~~~~~~~~~~~~~~n~~~~-----~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~ 478 (628)
++++.++.++++||+||++. ++.+.||+||||+||+|.||+|+|+.++|.||||++...+. .
T Consensus 437 ~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~-----------~-- 503 (887)
T KOG1329|consen 437 PLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK-----------P-- 503 (887)
T ss_pred cccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC-----------C--
Confidence 99999999999999999987 67889999999999999999999999999999999876530 0
Q ss_pred chhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCcch
Q 006854 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (628)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 558 (628)
..+.++.+.+.+.. ..|+. + ...++..+.+|+++|.+.+...+ +....+.|+|+++....
T Consensus 504 ---~~~~~p~L~p~~~~-------~~~~~-~-----~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~ 563 (887)
T KOG1329|consen 504 ---YDDSLPLLLPISDI-------TGPSE-P-----NEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEI 563 (887)
T ss_pred ---CCccceeecChhhh-------cCCCC-c-----cccccccccccceeeccCCcccc----hHHhhhhcccccCCCch
Confidence 01122222222221 01110 1 13456789999999999876544 56778889999999889
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEEe
Q 006854 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRC 627 (628)
Q Consensus 559 e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~~ 627 (628)
|.||++||+++|++||||||||||||+++++.|+. +.|.+++||+++|++|+++||+||||||+
T Consensus 564 e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVI 627 (887)
T KOG1329|consen 564 EDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVI 627 (887)
T ss_pred HHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 99999999999999999999999999999876544 46778899999999999999999999997
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=4.8e-55 Score=498.39 Aligned_cols=347 Identities=30% Similarity=0.458 Sum_probs=245.1
Q ss_pred CccccCC----CCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCC
Q 006854 203 NAYFPLR----KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRP 278 (628)
Q Consensus 203 ~s~~P~~----~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~ 278 (628)
.+++|++ .+|.+++|+|| +++|.+|++||++||++|+|++|+|+|.+||+|++...
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~ 380 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHDH 380 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCCc
Confidence 4556766 68999999998 68999999999999999999999999999999853211
Q ss_pred CCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhh--ccCCceEEeccCCCCCccchhh
Q 006854 279 LPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFF--KHSSVNCVLAPRYASSKLSYFK 356 (628)
Q Consensus 279 ~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l--~~~gv~~~~~~~~~~~~~~~~~ 356 (628)
. +.+|.++|++||++||+||||+||..|..... . +....+.+ .++||+|... |....
T Consensus 381 --~--g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~--~--------S~~~k~~L~~lh~gI~V~r~---P~~~~---- 439 (1068)
T PLN02866 381 --E--SSRLDSLLEAKAKQGVQIYILLYKEVALALKI--N--------SVYSKRRLLGIHENVKVLRY---PDHFS---- 439 (1068)
T ss_pred --h--HHHHHHHHHHHHHCCCEEEEEEECcccccccc--C--------chhhHHHHHHhCCCeEEEec---Ccccc----
Confidence 3 48999999999999999999999998643210 0 11122222 3689998632 22110
Q ss_pred hccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcc-cccCCCCCCCCC------------
Q 006854 357 QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDT-VFKDDFHNPTYP------------ 423 (628)
Q Consensus 357 ~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~-~~~~~~~n~~~~------------ 423 (628)
....++|||||++|||++ +||+||+|||.+||||++|.+.|.... +-++||.|++..
T Consensus 440 --~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ 509 (1068)
T PLN02866 440 --SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDE 509 (1068)
T ss_pred --cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccc
Confidence 224689999999999998 999999999999999999999874433 445699998753
Q ss_pred -CCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccchhhhhhcccccc--------------------------c
Q 006854 424 -IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHW--------------------------R 476 (628)
Q Consensus 424 -~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~--------------------------~ 476 (628)
++...+++||||+||+|+||+|.+|+++|++|||.+++.+. ..+....| .
T Consensus 510 ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~---~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~ 586 (1068)
T PLN02866 510 LDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKA---PNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQE 586 (1068)
T ss_pred cccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccC---ccccccccccccccccccccccccccccccccccc
Confidence 23455678999999999999999999999999999887630 00000000 0
Q ss_pred c--------cc---hhhccccccccCcccccc------------------------CC----CccccCC---CC--cc--
Q 006854 477 D--------DY---LIKIGRISWILSPELSLK------------------------TN----GTTIVPR---DD--NV-- 510 (628)
Q Consensus 477 ~--------~~---~~~~~~~~~~~~~~~~~~------------------------~~----~~~~~p~---~~--~~-- 510 (628)
+ +. ..+.+.++.+++...... ++ ..+..|- .+ ..
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 666 (1068)
T PLN02866 587 DNQKGIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLD 666 (1068)
T ss_pred cccccccccccccccccccccccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00 000011222222211000 00 0000000 00 00
Q ss_pred -------------------c-------------ccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCc-c
Q 006854 511 -------------------V-------------RVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDV-V 557 (628)
Q Consensus 511 -------------------~-------------~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~-~ 557 (628)
. ........++|.+||+||.+.++. +. .
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~-------------------G~~~ 727 (1068)
T PLN02866 667 LSVKMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSA-------------------GTSQ 727 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccC-------------------CCCc
Confidence 0 000012346799999999854432 22 3
Q ss_pred hhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEEe
Q 006854 558 IDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRC 627 (628)
Q Consensus 558 ~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~~ 627 (628)
+|+||++||+++|++|+||||||||||++... .+..+.|+|+++|+++|++|++++++||||||+
T Consensus 728 ~E~SI~~AYi~~I~~A~hfIYIENQFFis~~~-----~~~~i~N~I~~AL~~RI~rA~~~~~~frviIVi 792 (1068)
T PLN02866 728 VEESIHAAYCSLIEKAEHFIYIENQFFISGLS-----GDDTIQNRVLEALYRRILRAHKEKKCFRVIIVI 792 (1068)
T ss_pred hHHHHHHHHHHHHHhcccEEEEeccccccccc-----ccccccchHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 58999999999999999999999999999852 256789999999999999999999999999997
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=6.7e-39 Score=357.26 Aligned_cols=260 Identities=22% Similarity=0.332 Sum_probs=201.3
Q ss_pred CccccCCCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCC
Q 006854 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (628)
Q Consensus 203 ~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g 282 (628)
.+.+|.+.+|.++++++| +++|++++++|++|+++|+|++|+|.+ |. .|
T Consensus 131 ~~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~~-------d~----~g 179 (509)
T PRK12452 131 FGGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYKS-------DE----IG 179 (509)
T ss_pred ccCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEeC-------Cc----HH
Confidence 466899999999999998 689999999999999999999999965 33 44
Q ss_pred CCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhhccCCceEEe-ccCCCCCccchhhhcccc
Q 006854 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL-APRYASSKLSYFKQQIVG 361 (628)
Q Consensus 283 ~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~-~~~~~~~~~~~~~~~~~~ 361 (628)
..+.++|++||+|||+|||| +|+.||... .....+.|+++||++.. .|.... ++ ..+
T Consensus 180 --~~i~~aL~~aa~rGV~VRiL-~D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~~----~~---~~~ 237 (509)
T PRK12452 180 --TKVRDALIKKAKDGVIVRFL-YDGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFSA----WL---LET 237 (509)
T ss_pred --HHHHHHHHHHHHCCCEEEEE-EECCCCCCC------------CHHHHHHHHhCCeEEEEecCcccc----cc---ccc
Confidence 79999999999999999999 599998631 35678889999999973 332111 11 335
Q ss_pred ccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEe
Q 006854 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD 441 (628)
Q Consensus 362 ~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~ 441 (628)
.++|||||++||||+ +||+||+|+++++... ....++|||+|++++
T Consensus 238 ~n~RnHRKi~VIDg~--------ia~~GG~Ni~d~y~~~--------------------------~~~~~~WrD~~~~i~ 283 (509)
T PRK12452 238 VNYRNHRKIVIVDGE--------IGFTGGLNVGDEYLGR--------------------------SKKFPVWRDSHLKVE 283 (509)
T ss_pred ccCCCCCeEEEEcCC--------EEEeCCcccchhhcCC--------------------------CCCCCCceEEEEEEE
Confidence 789999999999998 9999999999954421 123468999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCC
Q 006854 442 GPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPEN 521 (628)
Q Consensus 442 Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 521 (628)
||+|.+++..|.++|+.+++... . ..| ... ... ..+|+. ....+.
T Consensus 284 Gp~V~~l~~~F~~dW~~~~~~~~------~-~~~--------~~~---~~~---------~~~~~~--------~~~~~~ 328 (509)
T PRK12452 284 GKALYKLQAIFLEDWLYASSGLN------T-YSW--------DPF---MNR---------QYFPGK--------EISNAE 328 (509)
T ss_pred CHHHHHHHHHHHHHHHHhhCccc------c-ccc--------ccc---cch---------hcCCCc--------cccCCC
Confidence 99999999999999998765310 0 000 000 000 001110 011245
Q ss_pred eeeEEeeeccCCccCCCCCCccchhccccccccCcchhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCC
Q 006854 522 WHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADN 601 (628)
Q Consensus 522 ~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n 601 (628)
..+|++.+.|.. .+.+|+++|+++|.+||++|||+||||+|+.
T Consensus 329 ~~~q~~~sgp~~------------------------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~------------- 371 (509)
T PRK12452 329 GAVQIVASGPSS------------------------DDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ------------- 371 (509)
T ss_pred eEEEEEeCCCCc------------------------hhHHHHHHHHHHHHHhhhEEEEECCccCCCH-------------
Confidence 689999984311 1468999999999999999999999999985
Q ss_pred hhHHHHHHHHHHHHHcCCceEEEE
Q 006854 602 LIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 602 ~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
+|.++|..|+++|+++|+++
T Consensus 372 ----~l~~aL~~Aa~rGV~Vrii~ 391 (509)
T PRK12452 372 ----ETLTLLRLSAISGIDVRILY 391 (509)
T ss_pred ----HHHHHHHHHHHcCCEEEEEc
Confidence 79999999999999999876
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=8.7e-38 Score=347.46 Aligned_cols=257 Identities=21% Similarity=0.312 Sum_probs=200.2
Q ss_pred CccccCCCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCC
Q 006854 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (628)
Q Consensus 203 ~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g 282 (628)
.+.+|++.+|.++++.+| +++|++|+++|++|+++|+|++|+|.+ |. .|
T Consensus 107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~~-------d~----~g 155 (483)
T PRK01642 107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWRP-------DG----LG 155 (483)
T ss_pred ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEcc-------CC----cH
Confidence 466899999999999998 689999999999999999999999854 33 44
Q ss_pred CCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhhccCCceEEec-cCCCCCccchhhhcccc
Q 006854 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA-PRYASSKLSYFKQQIVG 361 (628)
Q Consensus 283 ~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~~~~~~~~~ 361 (628)
.++.++|++||+|||+|||| +|..|+.... .....+.|+++||++... |....+ ++ ..+
T Consensus 156 --~~i~~aL~~aa~rGV~VriL-~D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~p~~~~~---~~---~~~ 215 (483)
T PRK01642 156 --DQVAEALIAAAKRGVRVRLL-YDSIGSFAFF-----------RSPYPEELRNAGVEVVEFLKVNLGR---VF---RRR 215 (483)
T ss_pred --HHHHHHHHHHHHCCCEEEEE-EECCCCCCCC-----------cHHHHHHHHHCCCEEEEecCCCccc---cc---ccc
Confidence 79999999999999999999 5999986421 233677899999998842 221111 11 335
Q ss_pred ccccCcceEEEEecCCCCCCcceEEEEccccCCC-CCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeE
Q 006854 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD-GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL 440 (628)
Q Consensus 362 ~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~-~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l 440 (628)
.++|||||++||||+ +||+||+|+++ ++... ....++|||+|+++
T Consensus 216 ~n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~--------------------------~~~~~~w~D~~~~i 261 (483)
T PRK01642 216 LDLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQ--------------------------DPGVGQWRDTHVRI 261 (483)
T ss_pred cccccCceEEEEcCC--------EEEeCCcccCCHHHhCC--------------------------CCCCCCcEEEEEEE
Confidence 789999999999998 99999999999 65532 12346899999999
Q ss_pred eCHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCC
Q 006854 441 DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPE 520 (628)
Q Consensus 441 ~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 520 (628)
+||+|.+++..|.++|+.+++... ... . +.. ..++ ....+
T Consensus 262 ~Gp~v~~l~~~F~~dW~~~~~~~~---------------~~~---~-----~~~--------~~~~---------~~~~~ 301 (483)
T PRK01642 262 EGPVVTALQLIFAEDWEWETGERI---------------LPP---P-----PDV--------LIMP---------FEEAS 301 (483)
T ss_pred EcHHHHHHHHHHHHHHHHHhCccc---------------CCC---C-----ccc--------ccCC---------ccCCC
Confidence 999999999999999998765410 000 0 000 0010 01123
Q ss_pred CeeeEEeeeccCCccCCCCCCccchhccccccccCcchhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCC
Q 006854 521 NWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGAD 600 (628)
Q Consensus 521 ~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~ 600 (628)
+..+|++++.|. . .+..++++|+++|.+|+++|||+||||+|+.
T Consensus 302 ~~~~qi~~sgP~--------~----------------~~~~~~~~~~~~I~~A~~~I~I~tpYfip~~------------ 345 (483)
T PRK01642 302 GHTVQVIASGPG--------D----------------PEETIHQFLLTAIYSARERLWITTPYFVPDE------------ 345 (483)
T ss_pred CceEEEEeCCCC--------C----------------hhhHHHHHHHHHHHHhccEEEEEcCCcCCCH------------
Confidence 468999988431 1 1467999999999999999999999999986
Q ss_pred ChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 601 NLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 601 n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
+|.++|..|+++|+++++++
T Consensus 346 -----~i~~aL~~Aa~rGV~Vril~ 365 (483)
T PRK01642 346 -----DLLAALKTAALRGVDVRIII 365 (483)
T ss_pred -----HHHHHHHHHHHcCCEEEEEe
Confidence 79999999999999999886
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=7.1e-35 Score=316.56 Aligned_cols=250 Identities=21% Similarity=0.315 Sum_probs=190.6
Q ss_pred cCCCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCc
Q 006854 207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT 286 (628)
Q Consensus 207 P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~ 286 (628)
+.+.||.++++.|| +++|++++++|++|+++|+|++|+|.+ |. .| ..
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~-------d~----~g--~~ 49 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFE-------DK----VG--KQ 49 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEec-------Cc----hH--HH
Confidence 56789999999998 689999999999999999999999965 32 33 78
Q ss_pred HHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhhccCCceEEe-ccCCCCCccchhhhcccccccc
Q 006854 287 LGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL-APRYASSKLSYFKQQIVGTIFT 365 (628)
Q Consensus 287 l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~-~~~~~~~~~~~~~~~~~~~~~r 365 (628)
|.++|++||+|||+||||+ |..|+... +....+.|.++||++.. .|... ++. .....+.|
T Consensus 50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~~-----~~~-~~~~~~~R 110 (411)
T PRK11263 50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRPR-----LLG-MRTNLFRR 110 (411)
T ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCccc-----ccc-cccccccC
Confidence 9999999999999999995 99987542 35678889999999974 22211 110 01223459
Q ss_pred CcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHH
Q 006854 366 HHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAA 445 (628)
Q Consensus 366 ~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav 445 (628)
+|+|++|||++ +||+||+|++++++.. .....|+|++++|+||+|
T Consensus 111 ~HrKiiVIDg~--------~a~vGg~N~~~~~~~~---------------------------~g~~~w~D~~v~i~Gp~V 155 (411)
T PRK11263 111 MHRKIVVIDGR--------IAFVGGINYSADHLSD---------------------------YGPEAKQDYAVEVEGPVV 155 (411)
T ss_pred CcceEEEEcCC--------EEEEcCeEchHhhccc---------------------------cCCCCceEEEEEEECHHH
Confidence 99999999998 9999999999855431 112469999999999999
Q ss_pred HHHHHHHHHHHhhhcccchhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeE
Q 006854 446 YDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQ 525 (628)
Q Consensus 446 ~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQ 525 (628)
.+++..|.+.|....... ..|.. . . . .+. ....+...+|
T Consensus 156 ~~l~~~f~~~w~~~~~~~---------~~~~~--------~-----~-~---------~~~---------~~~~g~~~~~ 194 (411)
T PRK11263 156 ADIHQFELEALPGQSAAR---------RWWRR--------H-----H-R---------AEE---------NRQPGEAQAL 194 (411)
T ss_pred HHHHHHHHHHHhhcccch---------hhhcc--------c-----c-c---------Ccc---------cCCCCCeEEE
Confidence 999999999996432110 00000 0 0 0 000 0123455788
Q ss_pred EeeeccCCccCCCCCCccchhccccccccCcchhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHH
Q 006854 526 IFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPM 605 (628)
Q Consensus 526 v~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~ 605 (628)
++.+-|. . ....|+++|+.+|.+|++.|||+||||+|+.
T Consensus 195 ~v~~~p~--------~----------------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~----------------- 233 (411)
T PRK11263 195 LVWRDNE--------E----------------HRDDIERHYLKALRQARREVIIANAYFFPGY----------------- 233 (411)
T ss_pred EEECCCc--------c----------------hHHHHHHHHHHHHHHhceEEEEEecCcCCCH-----------------
Confidence 8876321 0 1467999999999999999999999999975
Q ss_pred HHHHHHHHHHHcCCceEEEE
Q 006854 606 ELALKIASKIRANERFAVAR 625 (628)
Q Consensus 606 ~i~~~i~~a~~~~~~~~v~i 625 (628)
.|..+|..|.++|++|++++
T Consensus 234 ~l~~aL~~Aa~RGV~V~ii~ 253 (411)
T PRK11263 234 RLLRALRNAARRGVRVRLIL 253 (411)
T ss_pred HHHHHHHHHHHCCCEEEEEe
Confidence 69999999999999999986
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=99.94 E-value=1.4e-25 Score=247.10 Aligned_cols=259 Identities=23% Similarity=0.307 Sum_probs=189.9
Q ss_pred CCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHH
Q 006854 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (628)
Q Consensus 209 ~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~ 288 (628)
..++.++++.+| .+.|.++.++|++|+++|++++|++.. +. .| ..+.
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~~-------d~----~~--~~i~ 103 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQD-------DE----LG--REIL 103 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEeC-------Ch----hH--HHHH
Confidence 678889999987 689999999999999999999999865 22 33 7999
Q ss_pred HHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhhccCCc-eEEe-ccCCCCCccchhhhccccccccC
Q 006854 289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSV-NCVL-APRYASSKLSYFKQQIVGTIFTH 366 (628)
Q Consensus 289 ~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv-~~~~-~~~~~~~~~~~~~~~~~~~~~r~ 366 (628)
++|.++|++||+||+|+ |..|+... ........++++++ .+.. .+..+.. ......+.|+
T Consensus 104 ~~l~~~a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~r~ 165 (438)
T COG1502 104 DALIEAAKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPRP------LRFRRLNRRL 165 (438)
T ss_pred HHHHHHHHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCccccc------chhhhhhccc
Confidence 99999999999999995 99987331 13567788889999 5543 2222210 0134568899
Q ss_pred cceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHH
Q 006854 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY 446 (628)
Q Consensus 367 HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~ 446 (628)
|+|++|||+. ++|+||+|++++++... ...++|+|++++++||+|.
T Consensus 166 H~K~~viD~~--------i~~vGg~N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~ 211 (438)
T COG1502 166 HRKIVVIDGK--------VAFVGGANIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVA 211 (438)
T ss_pred cceEEEEcCC--------EEEecCcccchhhhccC--------------------------cCcccceeeeEEEECHHHH
Confidence 9999999998 99999999999776431 1234899999999999999
Q ss_pred HHHHHHHHHHhhhcccchhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEE
Q 006854 447 DVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQI 526 (628)
Q Consensus 447 ~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv 526 (628)
++...|.++|+....... .+. ... ... .+.. .. .+......+|+
T Consensus 212 ~l~~~f~~~w~~~~~~~~--------------~~~---~~~----~~~---------~~~~--~~----~~~~~~~~~~~ 255 (438)
T COG1502 212 DLARLFIQDWNLESGSSK--------------PLL---ALV----RPP---------LQSL--SL----LPVGRGSTVQV 255 (438)
T ss_pred HHHHHHHHHhhhccCcCc--------------ccc---ccc----ccc---------cccc--cc----cccccCcceEE
Confidence 999999999998744310 000 000 000 0000 00 01112233788
Q ss_pred eeeccCCccCCCCCCccchhccccccccCcchhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHH
Q 006854 527 FRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPME 606 (628)
Q Consensus 527 ~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~ 606 (628)
+.+.|. ...+. ....+.+.|+.+|.+|+++|+|++|||+|+. +
T Consensus 256 ~~~~P~---~~~~~-----------------~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~-----------------~ 298 (438)
T COG1502 256 LSSGPD---KGLGS-----------------ELIELNRLLLKAINSARESILIATPYFVPDR-----------------E 298 (438)
T ss_pred EecCCc---cccch-----------------hhhhHHHHHHHHHHhhceEEEEEcCCcCCCH-----------------H
Confidence 888542 11110 0112559999999999999999999999997 7
Q ss_pred HHHHHHHHHHcCCceEEEE
Q 006854 607 LALKIASKIRANERFAVAR 625 (628)
Q Consensus 607 i~~~i~~a~~~~~~~~v~i 625 (628)
+..+|..|.++|.+++|++
T Consensus 299 ~~~al~~a~~~Gv~V~ii~ 317 (438)
T COG1502 299 LLAALKAAARRGVDVRIII 317 (438)
T ss_pred HHHHHHHHHhcCCEEEEEe
Confidence 9999999999999999886
No 10
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.94 E-value=6.6e-26 Score=244.18 Aligned_cols=244 Identities=16% Similarity=0.162 Sum_probs=161.9
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~ 320 (628)
-.+|++++++|++||++|+|++|+|.- +++. .| ..|.++|++||+|||+||||+ |..|+
T Consensus 30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~~-----~~d~----~g--~~i~~aL~~aa~rGV~Vril~-D~~~~--------- 88 (369)
T PHA03003 30 MSTYECFDEIISQAKKYIYIASFCCNL-----RSTP----EG--RLILDKLKEAAESGVKVTILV-DEQSG--------- 88 (369)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEEecc-----cCCc----hH--HHHHHHHHHhccCCCeEEEEe-cCCCC---------
Confidence 368999999999999999999998421 2233 44 899999999999999999995 97653
Q ss_pred CcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCC
Q 006854 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (628)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~ 400 (628)
....+.|+++||++..... .. + +....+|+|++||||+ +||+||+||+++++..
T Consensus 89 -------~~~~~~L~~~Gv~v~~~~~--~~--------~-~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~~~~~~ 142 (369)
T PHA03003 89 -------DKDEEELQSSNINYIKVDI--GK--------L-NNVGVLLGSFWVSDDR--------RCYIGNASLTGGSIST 142 (369)
T ss_pred -------CccHHHHHHcCCEEEEEec--cc--------c-CCCCceeeeEEEEcCc--------EEEEecCccCCcccCc
Confidence 2345678889999873211 10 0 0012348899999999 9999999999955432
Q ss_pred CCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccch
Q 006854 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYL 480 (628)
Q Consensus 401 ~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~ 480 (628)
. ...+.|+|. ||+|.+|+..|.+.|..+++.. +
T Consensus 143 -~-------------------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~----------------~ 175 (369)
T PHA03003 143 -I-------------------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKS----------------V 175 (369)
T ss_pred -c-------------------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCC----------------c
Confidence 1 223579994 9999999999999998775432 0
Q ss_pred hhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCcchhh
Q 006854 481 IKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDK 560 (628)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~ 560 (628)
. .+.. ... ..|...+.. .. .....+++.+.|.. ..+. ...
T Consensus 176 ~--~~~~----~~~--------~~~~~~~~~----~~--~~~~~~~~~s~P~~---~~~~-----------------~~~ 215 (369)
T PHA03003 176 F--NRLC----CAC--------CLPVSTKYH----IN--NPIGGVFFSDSPEH---LLGY-----------------SRT 215 (369)
T ss_pred c--cccc----ccc--------CCccccccc----cc--CCCcceEEecCChH---HcCC-----------------CCC
Confidence 0 0000 000 001000000 00 00112344443211 0000 023
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHH-HcCCceEEEE
Q 006854 561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKI-RANERFAVAR 625 (628)
Q Consensus 561 ~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~-~~~~~~~v~i 625 (628)
.++++|+.+|.+||++|+|+++||+|.... ++ ......+|.++|.+|+ ++|++||+++
T Consensus 216 ~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~---d~----~~~~~~~i~~AL~~AAa~RGV~VRILv 274 (369)
T PHA03003 216 LDADVVLHKIKSAKKSIDLELLSLVPVIRE---DD----KTTYWPDIYNALIRAAINRGVKVRLLV 274 (369)
T ss_pred cCHHHHHHHHHHHhhEEEEEEeccccEEee---CC----CCccHHHHHHHHHHHHHcCCCEEEEEE
Confidence 578999999999999999999999986311 11 1233468999999985 9999999986
No 11
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=99.94 E-value=3.3e-25 Score=242.80 Aligned_cols=268 Identities=15% Similarity=0.150 Sum_probs=174.7
Q ss_pred CCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHH
Q 006854 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (628)
Q Consensus 209 ~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~ 288 (628)
..++.++++.+| .++|++|+++|++|+++|+|++|+|.. |+ .| ..|.
T Consensus 22 ~~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~~-------D~----~g--~~il 68 (451)
T PRK09428 22 QSPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLED-------DE----AG--REIL 68 (451)
T ss_pred cCcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEecC-------Cc----hH--HHHH
Confidence 457789999997 689999999999999999999999865 33 44 8999
Q ss_pred HHHHHHhh--cCCEEEEEEecCCCccC-cccccCCCcccCChHHHHhhhccC--CceEEeccCCCCCccchhhhcccccc
Q 006854 289 ELLKYKSE--EGVRVLLLVWDDKTSHD-KLGVKTPGVMATHDEETKKFFKHS--SVNCVLAPRYASSKLSYFKQQIVGTI 363 (628)
Q Consensus 289 ~~L~~aA~--rGV~VrILvwD~~gs~~-~~~~~~~~~~~~~~~~~~~~l~~~--gv~~~~~~~~~~~~~~~~~~~~~~~~ 363 (628)
++|.+|++ +||+|+||+ |...... ..+... ......+.+.++++ |+++.+.. .|.. ....+
T Consensus 69 ~AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~----~~~~~~~~~~l~~~~~gv~v~~f~-~p~~--------~~e~~ 134 (451)
T PRK09428 69 DALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAA----SNTNADWYCEMAQEYPGVDIPVYG-VPVN--------TREAL 134 (451)
T ss_pred HHHHHHHhcCCCcEEEEEE-EcccccccccccCC----CCcCHHHHHHHHHhCCCceEEEcC-Cccc--------cchhh
Confidence 99999854 899999996 9852111 000000 00135566667654 58887431 1211 12356
Q ss_pred ccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH
Q 006854 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP 443 (628)
Q Consensus 364 ~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp 443 (628)
.++|+|++|||++ |+|+| +||++.|+... ... ..|..++|+||
T Consensus 135 gr~HrKi~IiD~~--------v~ysG-aNi~d~Yl~~~--------------------------~~~--r~Dry~~i~g~ 177 (451)
T PRK09428 135 GVLHLKGFIIDDT--------VLYSG-ASLNNVYLHQH--------------------------DKY--RYDRYHLIRNA 177 (451)
T ss_pred hhceeeEEEECCC--------EEEec-ccccHHHhcCC--------------------------ccc--CcceEEEEeCc
Confidence 7899999999998 99987 89999655320 111 23778889999
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhhhcccc-ccccc--chhh-ccccccccCccccccCCCccccCCCCcccccccCCCC
Q 006854 444 AAYDVLINFEQRWRKATKLTELTFKFKRVS-HWRDD--YLIK-IGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDP 519 (628)
Q Consensus 444 av~~l~~~F~~rW~~~~~~~~~~~~~~~~~-~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 519 (628)
++.++...|.++|..++... .+.. .|... .+.. ...+...+.. ....++ ...
T Consensus 178 ~la~~~~~fi~~~~~~~~~v------~~l~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~----------~~~ 233 (451)
T PRK09428 178 ELADSMVNFIQQNLLNSPAV------NRLDQPNRPKTKEIKNDIRQFRQRLRD--------AAYQFQ----------GQA 233 (451)
T ss_pred hHHHHHHHHHHHHhhccCcc------ccccccccccchhhHHHHHHHHHHHhh--------hccCcc----------ccc
Confidence 99999999999998765421 0000 00000 0000 0000000000 000000 001
Q ss_pred CCeeeEEeeeccCCccCCCCCCccchhccccccccCcchhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCC
Q 006854 520 ENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGA 599 (628)
Q Consensus 520 ~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~ 599 (628)
+...+++.+..+.++ ...+...+..+|.+|++.|+|+||||+|+.
T Consensus 234 ~~~~~~v~p~~g~g~------------------------~~~l~~~~~~li~~A~~~i~I~TPYF~p~~----------- 278 (451)
T PRK09428 234 NNDELSVTPLVGLGK------------------------KNLLNKTIFHLMASAEQKLTICTPYFNLPA----------- 278 (451)
T ss_pred CCCCeEEeeeeccCC------------------------chHHHHHHHHHHhccCcEEEEEeCCcCCCH-----------
Confidence 122345554432111 146889999999999999999999999996
Q ss_pred CChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 600 DNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 600 ~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
.+..+|.+|.++|.+++|++
T Consensus 279 ------~l~~~L~~a~~rGv~V~Ii~ 298 (451)
T PRK09428 279 ------ILVRNIIRLLRRGKKVEIIV 298 (451)
T ss_pred ------HHHHHHHHHHhcCCcEEEEc
Confidence 69999999999999998876
No 12
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.93 E-value=9.6e-25 Score=238.33 Aligned_cols=251 Identities=14% Similarity=0.109 Sum_probs=163.9
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~ 320 (628)
..+|+.+.+.|.+|+++|+|++|.|.|+ +...-+.| ..|.++|++||+|||+||||+ |..+.
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~~------d~~~~~~G--~~i~~aL~~aA~rGV~VRIL~-d~~~~--------- 86 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISSFYWSLS------DEVGTNFG--TMILNEIIQLPKRGVRVRIAV-NKSNK--------- 86 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEeEEEecC------ccccchhH--HHHHHHHHHHHHCCCEEEEEE-CCCCC---------
Confidence 3578999999999999999999998752 11000123 789999999999999999995 86532
Q ss_pred CcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCC
Q 006854 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (628)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~ 400 (628)
.....+.|+++||++..... .. ..+.++|+|++|||++ ++|+||+|+.+ |+..
T Consensus 87 ------~~~~~~~L~~aGv~v~~~~~--~~----------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~ 139 (424)
T PHA02820 87 ------PLKDVELLQMAGVEVRYIDI--TN----------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT 139 (424)
T ss_pred ------chhhHHHHHhCCCEEEEEec--CC----------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh
Confidence 12334678889999874221 10 1235799999999998 99999999977 4322
Q ss_pred CCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeE--eCHHHHHHHHHHHHHHhhhcccchhhhhhccccccccc
Q 006854 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL--DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (628)
Q Consensus 401 ~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l--~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~ 478 (628)
..+|+++.+ +||+|.+|+..|..+|+.+++.. + ..|.
T Consensus 140 -------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~--~------~~~~-- 178 (424)
T PHA02820 140 -------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL--P------YNWK-- 178 (424)
T ss_pred -------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCC--C------Cccc--
Confidence 124677777 79999999999999998775321 0 0010
Q ss_pred chhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCcch
Q 006854 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (628)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 558 (628)
..+ +. .++...|.. ....+....|++.+.|.. ..+ ..
T Consensus 179 -----~~~----~~----------~~~~~~p~~----~~~~~~~~~~~~sssP~~---~~~-----------------~~ 215 (424)
T PHA02820 179 -----NFY----PL----------YYNTDHPLS----LNVSGVPHSVFIASAPQQ---LCT-----------------ME 215 (424)
T ss_pred -----ccc----cc----------ccccCCCcc----cccCCccceEEEeCCChh---hcC-----------------CC
Confidence 000 00 011110000 011122234555553211 000 01
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHH-HHHcCCceEEEEE
Q 006854 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIAS-KIRANERFAVARR 626 (628)
Q Consensus 559 e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~-a~~~~~~~~v~i~ 626 (628)
....+++|+.+|.+|+++|||+++||+|+... + +. .+.-=.+|.++|.+ |+++|++||++|=
T Consensus 216 r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~~~---~-~~--~~~yw~~i~~AL~~AA~~RGV~VriLvp 278 (424)
T PHA02820 216 RTNDLTALLSCIRNASKFVYVSVMNFIPIIYS---K-AG--KILFWPYIEDELRRAAIDRKVSVKLLIS 278 (424)
T ss_pred CCchHHHHHHHHHHHhhEEEEEEccccceeec---c-CC--cccchHHHHHHHHHHHHhCCCEEEEEEe
Confidence 13468999999999999999999999998310 0 00 11111379999986 6679999999874
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.88 E-value=8.4e-22 Score=187.96 Aligned_cols=157 Identities=50% Similarity=0.808 Sum_probs=130.3
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe
Q 006854 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (628)
Q Consensus 12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~ 91 (628)
..++||+|.|+|++|++|++||..+.++++++.+...|..... ..+. +. .....+++||||+|.+++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~--~~-------~~~~~g~sDPYv~V~l~~~ 69 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTL---KRPS--SH-------RHVGKITSDPYATVDLAGA 69 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhccccc---cccc--cc-------ccCCCCCcCeEEEEEECCe
Confidence 4789999999999999999999888888888876544332210 0000 00 0112346999999999987
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCc
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g 171 (628)
+..||++++++.||+|||+|.|.+.++.+.|.|+|||++.+++++||++.+|++++..+...+.|++|.+..+++.+..|
T Consensus 70 ~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~ 149 (158)
T cd04015 70 RVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGA 149 (158)
T ss_pred EeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCC
Confidence 77899999999999999999999988888899999999998889999999999999988889999999888788888889
Q ss_pred eEEEEEEEe
Q 006854 172 SIQLELKFT 180 (628)
Q Consensus 172 ~i~l~l~y~ 180 (628)
+|+|+++|.
T Consensus 150 ~l~v~~~f~ 158 (158)
T cd04015 150 KIRVSLQFT 158 (158)
T ss_pred EEEEEEEEC
Confidence 999999984
No 14
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.82 E-value=1e-19 Score=165.66 Aligned_cols=117 Identities=23% Similarity=0.491 Sum_probs=101.5
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (628)
|+|.|+|++|++|+..+ .+. +||||++.++..+ .||
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~------------------------------------------sDPYv~i~lg~~~-~kT 37 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTR------------------------------------------MDPYCRIRVGHAV-YET 37 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCC------------------------------------------CCceEEEEECCEE-EEe
Confidence 79999999999887654 443 9999999998866 599
Q ss_pred ccccC-CCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEecccc-ccccCceeEEEEEccCCCCCCCCCCceE
Q 006854 97 RVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAH-TIATGELISRWYDIIAPSGSPPKPGASI 173 (628)
Q Consensus 97 ~v~~~-~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~-~l~~~~~~~~w~~L~~~~~~~~~~~g~i 173 (628)
++..+ +.||+|||+|.|.+.+....|.|+|||+|.++ |++||.+.+++. .+..++..+.||+|....++ ...|+|
T Consensus 38 ~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~--~~~g~i 115 (121)
T cd04016 38 PTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE--DKEGMI 115 (121)
T ss_pred EEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC--CCceEE
Confidence 99876 79999999999999887778999999999998 899999999995 67788888999999654433 466999
Q ss_pred EEEEEE
Q 006854 174 QLELKF 179 (628)
Q Consensus 174 ~l~l~y 179 (628)
+|+|+|
T Consensus 116 ~l~l~y 121 (121)
T cd04016 116 NLVFSY 121 (121)
T ss_pred EEEEeC
Confidence 999997
No 15
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=1.4e-18 Score=158.02 Aligned_cols=120 Identities=26% Similarity=0.388 Sum_probs=107.1
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (628)
+|.|+|++|++|+..+..+. +||||++.+.+....+|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~~~kT~ 38 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGT------------------------------------------SDPYVKFKYGGKTVYKSK 38 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCC------------------------------------------CCCeEEEEECCEEEEEee
Confidence 48999999999998776554 999999999887778999
Q ss_pred cccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEEE
Q 006854 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (628)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l~ 176 (628)
+++++.||.|||+|.|.+......|.|+|||++.++ +++||.+.+++.++..+...+.|++|.+..+ .+..|+|+|.
T Consensus 39 ~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~ 116 (121)
T cd04042 39 TIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLV 116 (121)
T ss_pred eccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEE
Confidence 999999999999999999877788999999999996 9999999999999999888999999965543 3567999999
Q ss_pred EEEee
Q 006854 177 LKFTP 181 (628)
Q Consensus 177 l~y~p 181 (628)
++|.|
T Consensus 117 ~~~~~ 121 (121)
T cd04042 117 VTLTP 121 (121)
T ss_pred EEECC
Confidence 99986
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=1.5e-18 Score=159.15 Aligned_cols=117 Identities=21% Similarity=0.493 Sum_probs=100.8
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 006854 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (628)
Q Consensus 19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v 98 (628)
+.|+|++|++|++++..+. +||||++.+++.+ .||++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~------------------------------------------~dpYv~v~l~~~~-~kT~v 37 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT------------------------------------------NDAYVIIQLGKEK-YSTSV 37 (126)
T ss_pred CEEEEEECcCCcCCCCCcC------------------------------------------CCceEEEEECCee-eeeee
Confidence 5799999999998776554 9999999998755 69999
Q ss_pred ccCCCCCeEeeEEEEEecC------CCceEEEEEEEcCCCC-CeeeEEEeccccccc--cCceeEEEEEccCCCCCCCCC
Q 006854 99 LKNSQEPVWNEHFNIPLAH------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA--TGELISRWYDIIAPSGSPPKP 169 (628)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~------~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~--~~~~~~~w~~L~~~~~~~~~~ 169 (628)
++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||.+.|+++++. .+.....||+|....++..+.
T Consensus 38 ~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~ 117 (126)
T cd08682 38 KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKE 117 (126)
T ss_pred ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccc
Confidence 9999999999999999877 3567999999999987 999999999999988 567788999996555555567
Q ss_pred CceEEEEEE
Q 006854 170 GASIQLELK 178 (628)
Q Consensus 170 ~g~i~l~l~ 178 (628)
.|+|+|+++
T Consensus 118 ~Gei~l~~~ 126 (126)
T cd08682 118 RGEIEVDIQ 126 (126)
T ss_pred cceEEEEeC
Confidence 899999873
No 17
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=3.7e-18 Score=156.53 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=101.1
Q ss_pred EEEEEEEEeeC---CCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854 18 DLDLKIIRARR---LPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (628)
Q Consensus 18 ~L~v~I~~a~~---L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (628)
.|+|+|++|++ |+.++..+. +||||+|.+++++ .
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~------------------------------------------sDPYv~i~~g~~~-~ 37 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGS------------------------------------------TDAYCVAKYGPKW-V 37 (126)
T ss_pred CeEEEEEEeECCccccccccCCC------------------------------------------CCeeEEEEECCEE-e
Confidence 38999999999 666655543 9999999998875 5
Q ss_pred eeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCC-------CCeeeEEEeccccccccCceeEEEEEccCCCCCCC
Q 006854 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (628)
Q Consensus 95 kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~-------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~ 167 (628)
||++++++.||+|||+|.|.+..+...|+|+|||++.+ ++++||++.+++..+..+.....||+|....+++.
T Consensus 38 rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~ 117 (126)
T cd08379 38 RTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGV 117 (126)
T ss_pred EcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCc
Confidence 99999999999999999999988778899999999887 69999999999999999999999999987666667
Q ss_pred CCCceEEE
Q 006854 168 KPGASIQL 175 (628)
Q Consensus 168 ~~~g~i~l 175 (628)
+..|+|++
T Consensus 118 ~~~g~l~~ 125 (126)
T cd08379 118 KKMGELEC 125 (126)
T ss_pred cCCcEEEe
Confidence 78898875
No 18
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=8.1e-18 Score=153.45 Aligned_cols=99 Identities=25% Similarity=0.442 Sum_probs=87.5
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEE
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~ 158 (628)
+||||++.+.....++|++++++.||.|||+|.|.++.....|.|.|||++.++ +++||.+.++++++..+...+.||+
T Consensus 22 sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 101 (121)
T cd08401 22 RDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFP 101 (121)
T ss_pred cCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEE
Confidence 899999999877678999999999999999999999876678999999999987 8999999999999998888899999
Q ss_pred ccCCCCCCCCCCceEEEEEEE
Q 006854 159 IIAPSGSPPKPGASIQLELKF 179 (628)
Q Consensus 159 L~~~~~~~~~~~g~i~l~l~y 179 (628)
|. +..+..+..|+|+|+++|
T Consensus 102 L~-~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 102 LQ-PVDADSEVQGKVHLELRL 121 (121)
T ss_pred EE-ccCCCCcccEEEEEEEEC
Confidence 94 444444467999999875
No 19
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=1.9e-17 Score=152.00 Aligned_cols=102 Identities=20% Similarity=0.399 Sum_probs=87.2
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEE
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~ 157 (628)
+||||++.+++....||+++ ++.||.|||+|.|.+..+. ..++|.|+|++.++ +++||.+.+||.++..+...+.||
T Consensus 22 ~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~ 100 (126)
T cd08400 22 PHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWY 100 (126)
T ss_pred CCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeE
Confidence 89999999988776799985 5899999999999865543 57899999999887 999999999999999888889999
Q ss_pred EccCCCCCCCCCCceEEEEEEEeec
Q 006854 158 DIIAPSGSPPKPGASIQLELKFTPC 182 (628)
Q Consensus 158 ~L~~~~~~~~~~~g~i~l~l~y~p~ 182 (628)
+|.....++.+..|+|+|+|+|.+.
T Consensus 101 ~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 101 PLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred EcccCCCCCCCcCcEEEEEEEEEcc
Confidence 9965443345677999999999873
No 20
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.76 E-value=1.7e-17 Score=155.53 Aligned_cols=125 Identities=24% Similarity=0.483 Sum_probs=109.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (628)
+...|.|.|++|++||.+ .+|||+|.|++..++
T Consensus 9 ~~~sL~v~V~EAk~Lp~~-----------------------------------------------~~~Y~~i~Ld~~~va 41 (146)
T cd04013 9 TENSLKLWIIEAKGLPPK-----------------------------------------------KRYYCELCLDKTLYA 41 (146)
T ss_pred EEEEEEEEEEEccCCCCc-----------------------------------------------CCceEEEEECCEEEE
Confidence 457899999999999863 579999999999999
Q ss_pred eeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcC-CC----CCeeeEEEeccccccccCceeEEEEEccCCCCCC---
Q 006854 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD-VF----GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP--- 166 (628)
Q Consensus 95 kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d-~~----~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~--- 166 (628)
||+++.++.||.|+|+|.|...++.+.|+|.|+..+ .. ++++||.+.||+.++..+...++||+|....+.+
T Consensus 42 RT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~ 121 (146)
T cd04013 42 RTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSG 121 (146)
T ss_pred EEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccc
Confidence 999999999999999999998888888999997543 33 4799999999999999999999999998887775
Q ss_pred ----CCCCceEEEEEEEeecCCCC
Q 006854 167 ----PKPGASIQLELKFTPCDKNP 186 (628)
Q Consensus 167 ----~~~~g~i~l~l~y~p~~~~~ 186 (628)
....++|+++++|.+....|
T Consensus 122 ~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 122 GKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred cccccCCCCEEEEEEEEEEeeeCC
Confidence 56678999999999987665
No 21
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.74 E-value=3.5e-17 Score=150.07 Aligned_cols=105 Identities=20% Similarity=0.344 Sum_probs=91.2
Q ss_pred CCcEEEEEECC-eeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEE
Q 006854 80 SDPYVTVVVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (628)
Q Consensus 80 ~dpyv~v~l~~-~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~ 157 (628)
+||||++.++. ....+|++++++.||.|||.|.|.+......|.|+|||.+..+ +++||.+.+++.++..+.....|+
T Consensus 18 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~ 97 (126)
T cd08678 18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF 97 (126)
T ss_pred cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence 99999999974 3457999999999999999999999876788999999999987 999999999999999888888999
Q ss_pred EccCCCCCCCCCCceEEEEEEEeecCC
Q 006854 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (628)
Q Consensus 158 ~L~~~~~~~~~~~g~i~l~l~y~p~~~ 184 (628)
+|....++..+..|+|.+++.|.+.+.
T Consensus 98 ~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 98 PLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EecCCCCCCCCcceEEEEEEEEecccc
Confidence 995443333456899999999988653
No 22
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.74 E-value=1.7e-17 Score=150.05 Aligned_cols=116 Identities=26% Similarity=0.507 Sum_probs=99.4
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (628)
|.|.|+|++|++|++.+..+. +||||++.+++.. .+|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~kT 37 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK------------------------------------------QDPYCVLRIGGVT-KKT 37 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC------------------------------------------CCceEEEEECCCc-ccc
Confidence 789999999999998776554 9999999998744 688
Q ss_pred ccccC-CCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEE
Q 006854 97 RVLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (628)
Q Consensus 97 ~v~~~-~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~ 174 (628)
+++++ +.||.|||.|.|.+..+ ...|.|+|||++..++++||.+.+++.++..+....+|++|.. .+ +..|+|+
T Consensus 38 ~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~---~~~G~i~ 113 (118)
T cd08681 38 KTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KG---RYAGEVY 113 (118)
T ss_pred ccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CC---cEeeEEE
Confidence 88754 79999999999999875 5679999999998779999999999999887777789999953 33 4569999
Q ss_pred EEEEE
Q 006854 175 LELKF 179 (628)
Q Consensus 175 l~l~y 179 (628)
|+|+|
T Consensus 114 l~l~f 118 (118)
T cd08681 114 LELTF 118 (118)
T ss_pred EEEEC
Confidence 99986
No 23
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.73 E-value=3e-17 Score=150.68 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=101.0
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (628)
.|.|+|++|++|++.+..+. +||||++.+++.. .||+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~rT~ 37 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS------------------------------------------SSAYVELDFDGQK-KRTR 37 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEE-ecce
Confidence 48999999999998775554 9999999998865 6999
Q ss_pred cccCCCCCeEeeEEEEEecCCC----ceEEEEEEEcCCC--CCeeeEEEeccccccc-cCceeEEEEEccCCCCCCCCCC
Q 006854 98 VLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVF--GAQIIGTAAIPAHTIA-TGELISRWYDIIAPSGSPPKPG 170 (628)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~~----~~l~i~v~d~d~~--~~~~iG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~~ 170 (628)
+++++.||.|||.|.|.+..+. ..|.|+|||.+.+ ++++||++.++++++. .++....||+|. ..+...+..
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~-~~~~~~~~~ 116 (127)
T cd04022 38 TKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE-KRGLFSRVR 116 (127)
T ss_pred eEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEee-eCCCCCCcc
Confidence 9999999999999999988642 5799999999887 4899999999999988 567778999995 344444568
Q ss_pred ceEEEEEEEe
Q 006854 171 ASIQLELKFT 180 (628)
Q Consensus 171 g~i~l~l~y~ 180 (628)
|+|+|++.++
T Consensus 117 G~l~l~~~~~ 126 (127)
T cd04022 117 GEIGLKVYIT 126 (127)
T ss_pred EEEEEEEEEc
Confidence 9999999875
No 24
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.73 E-value=5.4e-17 Score=153.53 Aligned_cols=122 Identities=27% Similarity=0.404 Sum_probs=103.7
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (628)
.|.|+|++|++|++++..+. +||||++.+++. ..+|+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~------------------------------------------sDPYV~v~l~~~-~~kTk 37 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRV------------------------------------------PEVFVKAQLGNQ-VLRTR 37 (150)
T ss_pred CEEEEEEEeECCCCCCCCCC------------------------------------------CCeEEEEEECCE-EeeeE
Confidence 38999999999998876665 999999999984 46999
Q ss_pred cccC-CCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccC----ceeEEEEEccCCCC-----C
Q 006854 98 VLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG-----S 165 (628)
Q Consensus 98 v~~~-~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~----~~~~~w~~L~~~~~-----~ 165 (628)
+..+ +.||.|||+|.|.+..+ .+.|.|+|+|.+..+ +++||.+.++|.++..+ ....+||+|....+ +
T Consensus 38 ~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k 117 (150)
T cd04019 38 PSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKK 117 (150)
T ss_pred eccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccc
Confidence 9877 69999999999999765 458999999999876 99999999999998743 45689999976654 4
Q ss_pred CCCCCceEEEEEEEeec
Q 006854 166 PPKPGASIQLELKFTPC 182 (628)
Q Consensus 166 ~~~~~g~i~l~l~y~p~ 182 (628)
+.+..|+|+|+++|.+.
T Consensus 118 ~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 118 KRKFASRIHLRLCLDGG 134 (150)
T ss_pred cCcccccEEEEEEecCc
Confidence 56778999999999864
No 25
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=1e-16 Score=146.16 Aligned_cols=98 Identities=24% Similarity=0.442 Sum_probs=83.9
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCc-----ee
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGE-----LI 153 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~-----~~ 153 (628)
+||||++.+++. ..||++++++.||+|||+|.|.+... ...|.|+|||++.+++++||.+.++++++.... ..
T Consensus 17 ~Dpyv~v~l~~~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~ 95 (121)
T cd08378 17 NDPVVEVKLGNY-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLA 95 (121)
T ss_pred CCCEEEEEECCc-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCC
Confidence 899999999875 47999999999999999999998774 667999999999888999999999999987532 35
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEEe
Q 006854 154 SRWYDIIAPSGSPPKPGASIQLELKFT 180 (628)
Q Consensus 154 ~~w~~L~~~~~~~~~~~g~i~l~l~y~ 180 (628)
..||+|....+ .+..|+|+|+|.|-
T Consensus 96 ~~W~~L~~~~~--~~~~G~i~l~~~~~ 120 (121)
T cd08378 96 PQWYRLEDKKG--GRVGGELMLAVWFG 120 (121)
T ss_pred cceEEccCCCC--CccceEEEEEEEec
Confidence 68999965543 46779999999984
No 26
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.71 E-value=7.3e-17 Score=147.35 Aligned_cols=107 Identities=24% Similarity=0.473 Sum_probs=93.4
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (628)
Q Consensus 10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~ 89 (628)
+.+.|-.+.|.|+|++|++|++++ .+. +||||++.+.
T Consensus 6 ~~l~y~~~~L~V~Vi~A~~L~~~~-~~~------------------------------------------~DpyVkv~l~ 42 (122)
T cd08381 6 LSISYKNGTLFVMVMHAKNLPLLD-GSD------------------------------------------PDPYVKTYLL 42 (122)
T ss_pred EEEEEeCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCCEEEEEEe
Confidence 346677899999999999999887 544 9999999996
Q ss_pred C----eeeeeeccccCCCCCeEeeEEEEEe-cC---CCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 90 Q----ATVARTRVLKNSQEPVWNEHFNIPL-AH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 90 ~----~~~~kT~v~~~~~~P~wne~f~~~~-~~---~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
+ ..+.||++++++.||.|||+|.|.+ +. ....|.|+|||++.++ +++||++.++|+++..++....||+|
T Consensus 43 ~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 43 PDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 4 3357999999999999999999997 32 2567999999999988 89999999999999988888999998
No 27
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=1.3e-16 Score=147.41 Aligned_cols=120 Identities=22% Similarity=0.412 Sum_probs=100.8
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe------
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA------ 91 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~------ 91 (628)
.|+|+|++|++|+.++..+. +||||++.+.+.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~------------------------------------------~Dpyv~v~~~~~~~~~~~ 38 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA------------------------------------------SDPYVKISLYDPDGNGEI 38 (133)
T ss_pred CEEEEEEEeECCCcccCCCC------------------------------------------cCcEEEEEEECCCCCCcc
Confidence 48999999999998776554 999999998653
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCce------eEEEEEccCCCC
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAPSG 164 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~------~~~w~~L~~~~~ 164 (628)
...+|++++++.||.|||+|.|.+......|.|+|||++.++ +++||.+.+++.++..+.. ...||+|. +..
T Consensus 39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~-~~~ 117 (133)
T cd04033 39 DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLR-PRS 117 (133)
T ss_pred cceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeee-ecC
Confidence 246999999999999999999999876778999999999987 8999999999999886543 45899995 333
Q ss_pred CCCCCCceEEEEEEEe
Q 006854 165 SPPKPGASIQLELKFT 180 (628)
Q Consensus 165 ~~~~~~g~i~l~l~y~ 180 (628)
...+..|+|+|++.|.
T Consensus 118 ~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 118 SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCcceeEEEEEEeeC
Confidence 3445689999999984
No 28
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.70 E-value=2.8e-16 Score=142.11 Aligned_cols=117 Identities=31% Similarity=0.549 Sum_probs=100.4
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (628)
|.|.|+|++|++|+.++..+. +||||++.+.+.. .+|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~~T 37 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK------------------------------------------SDPFCVLELVNAR-LQT 37 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC------------------------------------------CCcEEEEEECCEe-eec
Confidence 789999999999998765554 9999999998755 699
Q ss_pred ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 006854 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (628)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l 175 (628)
++++++.||.|||+|.|.+......+.|+|||++.++ +++||.+.+++.++..+. ..|++|.... ...+..|+|.|
T Consensus 38 ~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~-~~~~~~G~i~l 114 (119)
T cd08377 38 HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKK-LRTRAKGSILL 114 (119)
T ss_pred ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccC-CCCceeeEEEE
Confidence 9999999999999999999876788999999999876 899999999999987654 5799996443 33446799999
Q ss_pred EEEE
Q 006854 176 ELKF 179 (628)
Q Consensus 176 ~l~y 179 (628)
++.+
T Consensus 115 ~~~~ 118 (119)
T cd08377 115 EMDV 118 (119)
T ss_pred EEEe
Confidence 9986
No 29
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.70 E-value=3.9e-16 Score=140.68 Aligned_cols=113 Identities=26% Similarity=0.377 Sum_probs=99.2
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (628)
.|+|+|++|++|+..+..+. +||||++.+.+.. .+|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~kT~ 37 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGL------------------------------------------SDPYVKFRLGNEK-YKSK 37 (116)
T ss_pred CEEEEEEEEECCCCCCCCCC------------------------------------------CCcEEEEEECCEe-Eecc
Confidence 37899999999998775544 8999999998754 7999
Q ss_pred cccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 006854 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (628)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l 175 (628)
+++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..++....|++|... .|+|++
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~ 110 (116)
T cd08376 38 VCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLL 110 (116)
T ss_pred cccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEE
Confidence 999999999999999998876 678999999999987 99999999999999988889999999422 399999
Q ss_pred EEEEe
Q 006854 176 ELKFT 180 (628)
Q Consensus 176 ~l~y~ 180 (628)
.+.|.
T Consensus 111 ~~~~~ 115 (116)
T cd08376 111 LLTLT 115 (116)
T ss_pred EEEec
Confidence 98875
No 30
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.70 E-value=5.8e-17 Score=146.11 Aligned_cols=103 Identities=17% Similarity=0.303 Sum_probs=88.0
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-
Q 006854 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (628)
Q Consensus 12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~- 90 (628)
-.+..+.|+|+|++|++|+ . .+. +||||+++|.+
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~--~g~------------------------------------------sDPYVKv~L~~~ 43 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V--DAG------------------------------------------CECYISGCVSVS 43 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C--CCC------------------------------------------CCeEEEEEEcCC
Confidence 3445789999999999998 2 232 89999999965
Q ss_pred --eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 91 --ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 91 --~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
..+.+|+++++|.||+|||+|.|.++.. ...|.|+|||+|+++ +++||++.++++++..+...++|.+|
T Consensus 44 ~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 44 EGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 2456999999999999999999998874 457999999999998 99999999999998777777888764
No 31
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.70 E-value=2.6e-16 Score=143.37 Aligned_cols=117 Identities=25% Similarity=0.513 Sum_probs=99.5
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 006854 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (628)
Q Consensus 19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v 98 (628)
|.|+|++|++|++++..+. +||||++.+.+....||++
T Consensus 2 l~v~vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT~v 39 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS------------------------------------------SDPYCIVKVDNEVIIRTAT 39 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC------------------------------------------CCceEEEEECCEeeeeeee
Confidence 8899999999998876664 9999999998876689999
Q ss_pred ccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccC-ceeEEEEEccCCCCCCCCCCceEEEE
Q 006854 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDIIAPSGSPPKPGASIQLE 176 (628)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~~g~i~l~ 176 (628)
++++.||.|||.|.|.+.+....|.|+|||++.++ +++||.+.+++.++..+ ...+.|++|. +.....+..|+|+|+
T Consensus 40 ~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~-~~~~~~~~~G~i~l~ 118 (121)
T cd04054 40 VWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLT-EVDPDEEVQGEIHLE 118 (121)
T ss_pred EcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECe-eeCCCCccccEEEEE
Confidence 99999999999999999877788999999999987 89999999999988753 3468899994 322233456999998
Q ss_pred EE
Q 006854 177 LK 178 (628)
Q Consensus 177 l~ 178 (628)
++
T Consensus 119 ~~ 120 (121)
T cd04054 119 LS 120 (121)
T ss_pred EE
Confidence 75
No 32
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.69 E-value=2.9e-16 Score=142.47 Aligned_cols=113 Identities=28% Similarity=0.540 Sum_probs=96.8
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--eeeeee
Q 006854 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVART 96 (628)
Q Consensus 19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~~kT 96 (628)
|.|+|++|++|+..+..+. +||||++.+.+ ..+.||
T Consensus 2 L~V~vi~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~kT 39 (119)
T cd04036 2 LTVRVLRATNITKGDLLST------------------------------------------PDCYVELWLPTASDEKKRT 39 (119)
T ss_pred eEEEEEEeeCCCccCCCCC------------------------------------------CCcEEEEEEcCCCCccCcc
Confidence 7899999999998765443 99999999864 455799
Q ss_pred ccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 006854 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (628)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l 175 (628)
++++++.||.|||+|.|.+... ...|.|+|||++.+++++||++.+++.++..+.....|++| .+.+ .|+|++
T Consensus 40 ~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L-~~~~-----~g~l~~ 113 (119)
T cd04036 40 KTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL-NPQG-----KEELEV 113 (119)
T ss_pred ceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEEC-CCCC-----CceEEE
Confidence 9999999999999999998765 34689999999988889999999999999999999999999 3432 488888
Q ss_pred EEEE
Q 006854 176 ELKF 179 (628)
Q Consensus 176 ~l~y 179 (628)
++.+
T Consensus 114 ~~~~ 117 (119)
T cd04036 114 EFLL 117 (119)
T ss_pred EEEe
Confidence 8764
No 33
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.69 E-value=2.6e-16 Score=144.03 Aligned_cols=120 Identities=22% Similarity=0.421 Sum_probs=100.5
Q ss_pred eEEEEEEEEeeCCCCCCC--CchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854 17 GDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (628)
|.|.|+|++|++|+..+. .+. +||||++.++... .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~ 37 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------------------SDPYAILSVGAQR-F 37 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC------------------------------------------cCCeEEEEECCEE-E
Confidence 789999999999998765 443 9999999997654 7
Q ss_pred eeccccCCCCCeEeeEEEEEecC-CCceEEEEEEEcCCCC-CeeeEEEecccccccc---CceeEEEEEccCCC-CCCCC
Q 006854 95 RTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPS-GSPPK 168 (628)
Q Consensus 95 kT~v~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~---~~~~~~w~~L~~~~-~~~~~ 168 (628)
+|++++++.||.|||.|.|.+.. ....|.|+|||++.++ +++||.+.+++.++.. ......||+|.... ++...
T Consensus 38 kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~ 117 (128)
T cd04024 38 KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117 (128)
T ss_pred ecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccc
Confidence 99999999999999999999987 4678999999999886 8999999999999873 34467999996442 23345
Q ss_pred CCceEEEEEEE
Q 006854 169 PGASIQLELKF 179 (628)
Q Consensus 169 ~~g~i~l~l~y 179 (628)
..|+|+|+++|
T Consensus 118 ~~G~i~l~~~~ 128 (128)
T cd04024 118 VSGEIHLQFSW 128 (128)
T ss_pred ccceEEEEEEC
Confidence 68999999875
No 34
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.69 E-value=2.1e-16 Score=148.41 Aligned_cols=108 Identities=20% Similarity=0.409 Sum_probs=93.2
Q ss_pred eEeeceEEEEEEEEeeCCCCCC-CCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854 12 VIYLHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (628)
Q Consensus 12 ~~~~~g~L~v~I~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~ 90 (628)
+.|..|.|.|+|++|+||++++ ..+. +||||+++|.+
T Consensus 24 l~y~~~~L~V~Vi~ArnL~~~~~~~g~------------------------------------------sDPYVKv~Llp 61 (146)
T cd04028 24 LYDKKGQLEVEVIRARGLVQKPGSKVL------------------------------------------PAPYVKVYLLE 61 (146)
T ss_pred EEeCCCEEEEEEEEeeCCCcccCCCCC------------------------------------------cCCeEEEEEEC
Confidence 5677899999999999998764 3333 89999999965
Q ss_pred e----eeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEE-EcCCCC-CeeeEEEeccccccccCceeEEEEEccC
Q 006854 91 A----TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (628)
Q Consensus 91 ~----~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~-d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 161 (628)
. .+.||++++++.||+|||+|.|.+......|.|+|| |++.++ +++||.+.|+|+.+..+.....||+|..
T Consensus 62 ~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 62 GKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence 2 367999999999999999999999866778999999 577776 8999999999999988888899999953
No 35
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.5e-16 Score=143.26 Aligned_cols=120 Identities=30% Similarity=0.460 Sum_probs=100.0
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-eeeee
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-~~~~k 95 (628)
|.|.|+|++|++|+..+..+. .+||||++.+.+ ....+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-----------------------------------------~~dpyv~v~~~~~~~~~k 40 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-----------------------------------------TVDPYVTFSISNRRELAR 40 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-----------------------------------------CCCCeEEEEECCCCcceE
Confidence 789999999999986542221 289999999988 56789
Q ss_pred eccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEE-EEEccCCCCCCCCCCceE
Q 006854 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR-WYDIIAPSGSPPKPGASI 173 (628)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~-w~~L~~~~~~~~~~~g~i 173 (628)
|+++.++.||.|||.|.|.+......|.|+|||.+.++ +++||.+.+++.++..+..... |..+ ...++ ..|+|
T Consensus 41 T~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~-~~~~k---~~G~i 116 (124)
T cd04044 41 TKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNL-LRNGK---PVGEL 116 (124)
T ss_pred eeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhh-hcCCc---cceEE
Confidence 99999999999999999999866888999999999886 8999999999999997666654 4444 44333 56999
Q ss_pred EEEEEEee
Q 006854 174 QLELKFTP 181 (628)
Q Consensus 174 ~l~l~y~p 181 (628)
+++|+|.|
T Consensus 117 ~~~l~~~p 124 (124)
T cd04044 117 NYDLRFFP 124 (124)
T ss_pred EEEEEeCC
Confidence 99999987
No 36
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.68 E-value=7.3e-16 Score=142.43 Aligned_cols=127 Identities=23% Similarity=0.439 Sum_probs=102.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (628)
+.|.|.|+|++|++|+..+..+. ..+ .+ . -.+++||||++.+++....
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~---~~~----------------~~-~------------~~g~~dpyv~v~~~~~~~~ 49 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTR---HAV----------------PK-K------------GSQLLDPYVSIDVDDTHIG 49 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhh---hcc----------------cc-c------------CccCcCcEEEEEECCEEEe
Confidence 46899999999999987764321 000 00 0 0123899999999987778
Q ss_pred eeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEecccccccc--CceeEEEEEccCCCCCCCCCCc
Q 006854 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT--GELISRWYDIIAPSGSPPKPGA 171 (628)
Q Consensus 95 kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~--~~~~~~w~~L~~~~~~~~~~~g 171 (628)
+|++++++.||.|||+|.|.+. ....|.|.|||++.++ +++||.+.++|.++.. +...+.|++|. +.|
T Consensus 50 kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G 120 (132)
T cd04014 50 KTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQG 120 (132)
T ss_pred EEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCc
Confidence 9999999999999999999997 4678999999998887 8999999999999887 56778999993 249
Q ss_pred eEEEEEEEeec
Q 006854 172 SIQLELKFTPC 182 (628)
Q Consensus 172 ~i~l~l~y~p~ 182 (628)
+|+|+++|...
T Consensus 121 ~l~l~~~~~~~ 131 (132)
T cd04014 121 KLHVKIELKGS 131 (132)
T ss_pred EEEEEEEEecC
Confidence 99999998763
No 37
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.68 E-value=2.1e-16 Score=143.77 Aligned_cols=107 Identities=18% Similarity=0.339 Sum_probs=91.8
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (628)
Q Consensus 10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~ 89 (628)
+...|-++.|.|+|++|++|++++ .+. +||||++++.
T Consensus 5 l~~~~~~~~L~V~Vi~ar~L~~~~-~g~------------------------------------------~dpYVkv~l~ 41 (119)
T cd08685 5 LSIEGQNRKLTLHVLEAKGLRSTN-SGT------------------------------------------CNSYVKISLS 41 (119)
T ss_pred EEEEEcCCEEEEEEEEEECCCCCC-CCC------------------------------------------CCeeEEEEEE
Confidence 346678999999999999999876 443 9999999997
Q ss_pred C----eeeeeeccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC--CeeeEEEeccccccccCceeEEEEEc
Q 006854 90 Q----ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 90 ~----~~~~kT~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~--~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
+ ..+.||++++++.||.|||+|.|.+... ...|.|+|||++... +++||.+.||+.++..++...+||.|
T Consensus 42 p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 42 PDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred eCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 5 3356999999999999999999998764 356899999998774 68999999999999988888999986
No 38
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.67 E-value=6.4e-16 Score=139.95 Aligned_cols=120 Identities=27% Similarity=0.476 Sum_probs=98.5
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (628)
|.|.|+|++|++|+..+.... |. -.+++||||++.+++ ...+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~--------------------------~~----------~~g~~dPyv~v~~~~-~~~kT 43 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVG--------------------------GL----------VKGKSDPYVIVRVGA-QTFKS 43 (121)
T ss_pred CeEEEEEEEccCCcccccccc--------------------------cC----------CCCCcCCEEEEEECC-EeEEc
Confidence 679999999999997764210 00 001389999999987 45899
Q ss_pred ccccCCCCCeEeeEEEEEecC-CCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 006854 97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (628)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l 175 (628)
++++++.||.|||+|.|.+.. ....|.|+|||++..++++||.+.+++.++..+.....||+|... ..|+|+|
T Consensus 44 ~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~ 117 (121)
T cd08391 44 KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL 117 (121)
T ss_pred cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence 999999999999999999875 467899999999988889999999999999877778899999432 3499999
Q ss_pred EEEE
Q 006854 176 ELKF 179 (628)
Q Consensus 176 ~l~y 179 (628)
+++|
T Consensus 118 ~~~~ 121 (121)
T cd08391 118 KLEW 121 (121)
T ss_pred EEeC
Confidence 9875
No 39
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.67 E-value=6.6e-16 Score=140.83 Aligned_cols=118 Identities=26% Similarity=0.422 Sum_probs=99.3
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (628)
.|.|+|++|++|+.++..+. +||||++.+.+.. .+|+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~------------------------------------------~DPyv~v~~~~~~-~kT~ 37 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT------------------------------------------SDPFVRVFYNGQT-LETS 37 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC------------------------------------------cCceEEEEECCEE-Eece
Confidence 48999999999998775554 8999999997754 6999
Q ss_pred cccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCC---CCCCCce
Q 006854 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS---PPKPGAS 172 (628)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~---~~~~~g~ 172 (628)
+++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+.....||.|.....+ ..+..|.
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~ 117 (123)
T cd04025 38 VVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGS 117 (123)
T ss_pred eecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEE
Confidence 999999999999999998875 467999999999887 89999999999999877777899999643322 3456788
Q ss_pred EEEEEE
Q 006854 173 IQLELK 178 (628)
Q Consensus 173 i~l~l~ 178 (628)
|++.|+
T Consensus 118 l~~~~~ 123 (123)
T cd04025 118 LRLKVR 123 (123)
T ss_pred EEEEeC
Confidence 988873
No 40
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.66 E-value=1.5e-15 Score=141.42 Aligned_cols=118 Identities=23% Similarity=0.362 Sum_probs=98.2
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeee
Q 006854 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (628)
Q Consensus 14 ~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~ 93 (628)
..-|.|.|+|++|++|+.++..+. +||||++.++...
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~- 48 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGK------------------------------------------SDPYCEVSMGSQE- 48 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEe-
Confidence 345899999999999998776554 9999999997754
Q ss_pred eeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEecccccccc-----CceeEEEEEccCCCCCC
Q 006854 94 ARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-----GELISRWYDIIAPSGSP 166 (628)
Q Consensus 94 ~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~ 166 (628)
.+|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++.. ......|..+ .
T Consensus 49 ~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~-~----- 122 (136)
T cd08375 49 HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL-H----- 122 (136)
T ss_pred eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc-c-----
Confidence 7999999999999999999999765 467999999999887 8999999999999885 3344567766 2
Q ss_pred CCCCceEEEEEEEe
Q 006854 167 PKPGASIQLELKFT 180 (628)
Q Consensus 167 ~~~~g~i~l~l~y~ 180 (628)
.+..|+|+|++.+.
T Consensus 123 ~~~~g~i~l~~~~~ 136 (136)
T cd08375 123 EVPTGEVVVKLDLQ 136 (136)
T ss_pred cccceeEEEEEEeC
Confidence 23459999999873
No 41
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.66 E-value=6.5e-16 Score=140.51 Aligned_cols=100 Identities=22% Similarity=0.300 Sum_probs=85.6
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC-----C-e
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-----Q-A 91 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~-----~-~ 91 (628)
.|+|+|++|++|+.++. |. +||||+|++. . .
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~------------------------------------------~DPYVkV~l~g~~~~~k~ 37 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM------------------------------------------FRPFVEVNLIGPHLSDKK 37 (120)
T ss_pred CEEEEEEECcCCCcccC-CC------------------------------------------CCCEEEEEEecCCCcccc
Confidence 48999999999987652 43 8999999983 2 2
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEcc
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~ 160 (628)
.+.+|+++.++.||+|||+|.|.+... ...|.|.|+|++..+ +++||++.+|++++..++....|++|.
T Consensus 38 ~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 38 RKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred cEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 346899999999999999999999753 245899999999887 899999999999999988899999993
No 42
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.66 E-value=2.7e-15 Score=137.65 Aligned_cols=122 Identities=17% Similarity=0.236 Sum_probs=102.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeee
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~k 95 (628)
...|+|+|++|++|+..+..+. +||||++.+++.. .+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------------------~dPyv~v~~~~~~-~k 38 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG------------------------------------------ADPYVIIKCEGES-VR 38 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC------------------------------------------cCccEEEEECCEE-EE
Confidence 5689999999999998775554 9999999998765 69
Q ss_pred eccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCC-CCCCCCCceEE
Q 006854 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS-GSPPKPGASIQ 174 (628)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~~~g~i~ 174 (628)
|++++++.||.|||.|.|.+......|+|+|||++.+++++||.+.+++.++. .....|++|.... ....+..|+|.
T Consensus 39 T~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~ 116 (126)
T cd04046 39 SPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTIS 116 (126)
T ss_pred eCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEE
Confidence 99999999999999999998888888999999999888999999999998764 3345788885322 23456789999
Q ss_pred EEEEEeec
Q 006854 175 LELKFTPC 182 (628)
Q Consensus 175 l~l~y~p~ 182 (628)
+++++.+.
T Consensus 117 ~~~~~~~~ 124 (126)
T cd04046 117 VKVTSSDD 124 (126)
T ss_pred EEEEEccc
Confidence 99987663
No 43
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.65 E-value=9.9e-16 Score=139.78 Aligned_cols=104 Identities=33% Similarity=0.526 Sum_probs=91.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~ 92 (628)
..++|.|+|++|++|+.++..+. +||||++.+.+ ..
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~l~~~~~~ 51 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT------------------------------------------SDPYVKVYLLPDKKK 51 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 56899999999999998775554 89999999864 34
Q ss_pred eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEcc
Q 006854 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (628)
Q Consensus 93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~ 160 (628)
+.+|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.++++++..+...++|++|.
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 57999999999999999999998763 457999999999987 899999999999998888899999983
No 44
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.65 E-value=1.1e-15 Score=140.19 Aligned_cols=103 Identities=22% Similarity=0.398 Sum_probs=89.8
Q ss_pred eceEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC---
Q 006854 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--- 90 (628)
..+.|.|+|++|++|++.+.. +. +||||++++.+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyVkv~l~p~~~ 50 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKR------------------------------------------SNPYVKTYLLPDKS 50 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCC------------------------------------------CCcEEEEEEEcCCc
Confidence 578899999999999976542 22 99999999854
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 91 -~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
..+.||++++++.||.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++..+........|++|
T Consensus 51 ~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 51 RQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred cccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 3356999999999999999999998763 557999999999988 89999999999999988889999998
No 45
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.65 E-value=6.4e-16 Score=141.68 Aligned_cols=102 Identities=23% Similarity=0.401 Sum_probs=88.5
Q ss_pred ceEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
.+.|.|+|++|++|++++.. +. +||||++++.+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~------------------------------------------~dpyVkv~l~p~~~~ 51 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQR------------------------------------------SDPYVKTYLLPDKSN 51 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence 45899999999999987653 33 99999999854
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
..+.||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.++|.++........||+|
T Consensus 52 ~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 52 RGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred cccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 2346999999999999999999998753 467999999999987 89999999999999877778899998
No 46
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.64 E-value=5.5e-16 Score=145.41 Aligned_cols=97 Identities=29% Similarity=0.566 Sum_probs=88.5
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeee
Q 006854 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (628)
Q Consensus 14 ~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~ 93 (628)
.+.|.|.|+|++|.+|...|..+. +||||.+.+++++
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~s------------------------------------------SDPyVVl~lg~q~- 39 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGS------------------------------------------SDPYVVLELGNQK- 39 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccC------------------------------------------CCCeEEEEECCee-
Confidence 467999999999999998877554 9999999999977
Q ss_pred eeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCcee
Q 006854 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (628)
Q Consensus 94 ~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~ 153 (628)
.||++++++.||+|||.|+|++.++...|+++|||+|.++ ||+||.|.|++..+......
T Consensus 40 lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 40 LKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred eeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 5999999999999999999999999999999999999999 99999999999988865433
No 47
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=4.2e-15 Score=136.38 Aligned_cols=103 Identities=35% Similarity=0.593 Sum_probs=90.3
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEE
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~ 155 (628)
+||||++.+...+ .+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+.....
T Consensus 15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~ 93 (127)
T cd08373 15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV 93 (127)
T ss_pred CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence 9999999998765 6999999999999999999998764 577999999999887 8999999999999998888899
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEeecCCC
Q 006854 156 WYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (628)
Q Consensus 156 w~~L~~~~~~~~~~~g~i~l~l~y~p~~~~ 185 (628)
|++|....+++ ..|+|+++++|.|.+..
T Consensus 94 ~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 94 TEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred EEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 99997655542 35899999999997654
No 48
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.63 E-value=1.6e-15 Score=138.46 Aligned_cols=103 Identities=26% Similarity=0.471 Sum_probs=91.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~ 92 (628)
..|.|.|+|++|++|+.++..+. +||||++.+.+ ..
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 51 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGT------------------------------------------ADPYCKVRLLPDRSN 51 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCeEEEEEecCCCC
Confidence 45899999999999998776554 99999999953 45
Q ss_pred eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
..+|++++++.||.|||+|.|.+... ...|.|+|||.+.++ +++||.+.++++++..++....||+|
T Consensus 52 ~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 52 TKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred cEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 67999999999999999999998764 457999999999987 99999999999999988888999998
No 49
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.63 E-value=1.4e-15 Score=140.02 Aligned_cols=102 Identities=23% Similarity=0.346 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
.+.|.|+|++|+||++++.. +. +||||++.+.+
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~------------------------------------------~dpYVkv~llp~~~~ 51 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK------------------------------------------CHPYVKVCLLPDKSH 51 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC------------------------------------------CCeEEEEEEEeCCcc
Confidence 48899999999999987653 43 99999999865
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecccccccc---CceeEEEEEc
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDI 159 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~---~~~~~~w~~L 159 (628)
..+.||++++++.||+|||+|.|.+... ...|.|.|||.+.++ +++||.+.|+|.++.. ++....||+|
T Consensus 52 ~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 52 NSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred cceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 2356999999999999999999998764 468999999999887 8999999999999874 3467789998
No 50
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.62 E-value=2.3e-15 Score=141.97 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=70.7
Q ss_pred CCcEEEEEECCe----eeeeeccccCCCCCeEeeEEEEEecC----------------CCceEEEEEEEcCCCC-CeeeE
Q 006854 80 SDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVFG-AQIIG 138 (628)
Q Consensus 80 ~dpyv~v~l~~~----~~~kT~v~~~~~~P~wne~f~~~~~~----------------~~~~l~i~v~d~d~~~-~~~iG 138 (628)
+||||+|.+.+. ...+|++++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||
T Consensus 19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG 98 (148)
T cd04010 19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLG 98 (148)
T ss_pred CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeE
Confidence 999999999762 34699999999999999999999851 1246899999999886 99999
Q ss_pred EEeccccccccC-ceeEEEEEccCC
Q 006854 139 TAAIPAHTIATG-ELISRWYDIIAP 162 (628)
Q Consensus 139 ~~~i~l~~l~~~-~~~~~w~~L~~~ 162 (628)
++.|++..+..+ .....||+|...
T Consensus 99 ~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 99 EVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEecccccccCCcCcceeecCCc
Confidence 999999999976 567899999544
No 51
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.62 E-value=1.8e-15 Score=138.54 Aligned_cols=103 Identities=23% Similarity=0.465 Sum_probs=88.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-e--
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-A-- 91 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-~-- 91 (628)
..+.|.|+|++|+||++++..+. +||||+++|.+ .
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~------------------------------------------~dpyVKv~Llp~~~~ 49 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPEN------------------------------------------SKVYVRVALLPCSSS 49 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCC------------------------------------------CCeEEEEEEccCCCC
Confidence 45689999999999998765443 89999999865 1
Q ss_pred --eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccC-ceeEEEEEc
Q 006854 92 --TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDI 159 (628)
Q Consensus 92 --~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~-~~~~~w~~L 159 (628)
...||++++++.||+|||+|.|+++.. ...|.|+||+.+.++ +++||.+.|+|+++... +....||+|
T Consensus 50 ~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 50 TSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 367999999999999999999998774 568999999999987 89999999999999644 457889876
No 52
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.62 E-value=2.3e-15 Score=134.83 Aligned_cols=100 Identities=32% Similarity=0.540 Sum_probs=87.2
Q ss_pred EEEEEEEeeCCCCCCC-CchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854 19 LDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (628)
Q Consensus 19 L~v~I~~a~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (628)
|.|+|++|++|+.++. .+. +||||++.+++ .+.||+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~-~~~kT~ 37 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL------------------------------------------TDAFVEVKFGS-TTYKTD 37 (110)
T ss_pred CEEEEEEEECCCccccCCCC------------------------------------------CCceEEEEECC-eeEecc
Confidence 6899999999998763 332 89999999988 557999
Q ss_pred cccCCCCCeE-eeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecccccccc---CceeEEEEEccC
Q 006854 98 VLKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIA 161 (628)
Q Consensus 98 v~~~~~~P~w-ne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~---~~~~~~w~~L~~ 161 (628)
+++++.||.| ||.|.|.+... ...|.|+|||++.++ +++||++.+++.++.. +...++||+|++
T Consensus 38 v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 38 VVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999999 99999998874 368999999999987 8999999999999986 456789999964
No 53
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.61 E-value=5.7e-15 Score=131.06 Aligned_cols=97 Identities=27% Similarity=0.507 Sum_probs=85.1
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 006854 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (628)
Q Consensus 19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v 98 (628)
|.|+|++|++|+..+..+. +||||++.+++ ...+|++
T Consensus 2 L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~-~~~kT~v 38 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE------------------------------------------PSPYVELTVGK-TTQKSKV 38 (105)
T ss_pred EEEEEeeecCCCCcccCCC------------------------------------------CCcEEEEEECC-EEEeCcc
Confidence 8899999999997664443 99999999988 4579999
Q ss_pred ccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCc--eeEEEEEcc
Q 006854 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGE--LISRWYDII 160 (628)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~--~~~~w~~L~ 160 (628)
++++.||.|||.|.|.+..+ ...|.|+|+|.+. +++||++.++|.++.... ..+.||+|.
T Consensus 39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 39 KERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecC
Confidence 99999999999999999885 5679999999887 889999999999988543 678999994
No 54
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.61 E-value=7.3e-15 Score=133.87 Aligned_cols=97 Identities=22% Similarity=0.336 Sum_probs=84.8
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (628)
+.|.|+|++||+|+.++ +.||||+|.+++.+ .+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---------------------------------------------~~dPYV~Ik~g~~k-~kT 35 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---------------------------------------------KFNTYVTLKVQNVK-STT 35 (127)
T ss_pred ceEEEEEEEeeCCCCCC---------------------------------------------CCCCeEEEEECCEE-eEe
Confidence 58999999999997432 27899999998855 699
Q ss_pred ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCcee--EEEEEcc
Q 006854 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELI--SRWYDII 160 (628)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~--~~w~~L~ 160 (628)
++.+.+ ||.|||.|.|.+......|.|+|||++.++|++||.+.|+|+++..++.. ..||+|.
T Consensus 36 ~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 36 IAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred eECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999884 99999999999988877899999999988899999999999999866544 7899995
No 55
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.61 E-value=5.8e-15 Score=135.13 Aligned_cols=106 Identities=26% Similarity=0.531 Sum_probs=91.0
Q ss_pred eEeec--eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854 12 VIYLH--GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (628)
Q Consensus 12 ~~~~~--g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~ 89 (628)
+.|-. +.|.|+|++|++|+.++..+. +||||++.+.
T Consensus 9 l~y~~~~~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~ 46 (127)
T cd04030 9 IRYSSQRQKLIVTVHKCRNLPPCDSSDI------------------------------------------PDPYVRLYLL 46 (127)
T ss_pred EEEeCCCCEEEEEEEEEECCCCccCCCC------------------------------------------CCceEEEEEE
Confidence 44444 889999999999998775544 9999999986
Q ss_pred C----eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCC--C-CeeeEEEeccccccccCceeEEEEEc
Q 006854 90 Q----ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF--G-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 90 ~----~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~--~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
+ ..+.||++++++.||.|||+|.|.+... ...|.|.|||.+.+ + +++||.+.+++.++..++...+||+|
T Consensus 47 ~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 47 PDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred cCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 4 3457999999999999999999998654 46799999999875 4 89999999999999888888999998
No 56
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.60 E-value=1.1e-14 Score=135.27 Aligned_cols=119 Identities=19% Similarity=0.353 Sum_probs=96.4
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (628)
.|+|+|++|++|+.++..+. +||||++.+.... .+|+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~kT~ 38 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL------------------------------------------SDPFARVSFLNQS-QETE 38 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC------------------------------------------CCCEEEEEECCee-eEee
Confidence 58999999999998876664 9999999998754 6999
Q ss_pred cccCCCCCeEeeEEEEEecCC----------CceEEEEEEEcCCCC-CeeeEEEec-ccccccc---CceeEEEEEccCC
Q 006854 98 VLKNSQEPVWNEHFNIPLAHP----------LSNLEIQVKDDDVFG-AQIIGTAAI-PAHTIAT---GELISRWYDIIAP 162 (628)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~----------~~~l~i~v~d~d~~~-~~~iG~~~i-~l~~l~~---~~~~~~w~~L~~~ 162 (628)
+++++.||.|||.|.|.+... ...|.|+|||.+.++ +++||++.+ ++..+.. +....+|++|. .
T Consensus 39 v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~ 117 (135)
T cd04017 39 VIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-K 117 (135)
T ss_pred eEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-c
Confidence 999999999999999974321 246899999999987 899999986 5544442 45678999994 3
Q ss_pred CCCCCCCCceEEEEEEEeecC
Q 006854 163 SGSPPKPGASIQLELKFTPCD 183 (628)
Q Consensus 163 ~~~~~~~~g~i~l~l~y~p~~ 183 (628)
.+ ...|+|+|++++.+.+
T Consensus 118 ~~---~~~Geil~~~~~~~~~ 135 (135)
T cd04017 118 GG---QSAGELLAAFELIEVT 135 (135)
T ss_pred CC---CchhheeEEeEEEEeC
Confidence 33 3579999999998853
No 57
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.60 E-value=1.5e-14 Score=132.24 Aligned_cols=114 Identities=24% Similarity=0.394 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--eeeee
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVAR 95 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~~k 95 (628)
.|+|+|++|++|+..+..+. +||||++.+.+ ....|
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~k 39 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL------------------------------------------SDPYVTLVDTNGKRRIAK 39 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC------------------------------------------CCceEEEEECCCCeeeec
Confidence 58999999999998765554 89999999865 34579
Q ss_pred eccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEecccccccc---CceeEEEEEccCCCCCCCCCC
Q 006854 96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPSGSPPKPG 170 (628)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~~~ 170 (628)
|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||++.+++.++.. +.....|++|. + .
T Consensus 40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-~-------~ 111 (126)
T cd04043 40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-T-------Q 111 (126)
T ss_pred ccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-C-------C
Confidence 99999999999999999999875 567999999999986 8999999999987653 34567899993 2 3
Q ss_pred ceEEEEEEEee
Q 006854 171 ASIQLELKFTP 181 (628)
Q Consensus 171 g~i~l~l~y~p 181 (628)
|+|+|.+.+.-
T Consensus 112 g~i~l~~~~~~ 122 (126)
T cd04043 112 GRLLLRVSMEG 122 (126)
T ss_pred CeEEEEEEEee
Confidence 88999988754
No 58
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.60 E-value=8.9e-15 Score=134.42 Aligned_cols=114 Identities=25% Similarity=0.493 Sum_probs=95.2
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (628)
.|.|+|++|++|+..+..+. +||||++.+++. ..+|+
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~~~~~-~~kT~ 38 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT------------------------------------------SDPYVTVQVGKT-KKRTK 38 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC------------------------------------------cCcEEEEEECCE-eeecc
Confidence 68999999999998776554 899999999765 47999
Q ss_pred cccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCC------------CCeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (628)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~------------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~ 165 (628)
+++++.||.|||.|.|.+..+...|.|+|||+|.. .+++||.+.+++.++.. ....||.|. +.+.
T Consensus 39 ~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~-~~~~ 115 (127)
T cd04027 39 TIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLE-KRTD 115 (127)
T ss_pred eecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECc-cCCC
Confidence 99999999999999999877677899999999852 38999999999998753 356899995 4344
Q ss_pred CCCCCceEEEEE
Q 006854 166 PPKPGASIQLEL 177 (628)
Q Consensus 166 ~~~~~g~i~l~l 177 (628)
.....|+|+|++
T Consensus 116 ~~~~~G~i~~~~ 127 (127)
T cd04027 116 KSAVSGAIRLHI 127 (127)
T ss_pred CCcEeEEEEEEC
Confidence 455789999875
No 59
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.60 E-value=6.4e-15 Score=133.98 Aligned_cols=103 Identities=29% Similarity=0.521 Sum_probs=88.9
Q ss_pred eceEEEEEEEEeeCCCCCC-CCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC---
Q 006854 15 LHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--- 90 (628)
..+.|.|+|++|++|+.++ ..+. +||||++.+.+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~ 49 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKR------------------------------------------SNPYVKVYLLPDKS 49 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCC------------------------------------------CCcEEEEEEecCCC
Confidence 5689999999999999876 3332 99999999854
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 91 -~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
..+.+|++++++.||.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.++..+.....||+|
T Consensus 50 ~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 50 KQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred cCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 1457999999999999999999998763 457999999999887 89999999999999888888999987
No 60
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.60 E-value=8.9e-15 Score=133.65 Aligned_cols=116 Identities=25% Similarity=0.376 Sum_probs=95.2
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 006854 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (628)
Q Consensus 19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v 98 (628)
|+|+|++|++|+.++..+. +||||++.+.+...++|++
T Consensus 2 l~v~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~kT~v 39 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL------------------------------------------PDPFAVITVDGGQTHSTDV 39 (123)
T ss_pred eEEEEEEecCCCccCCCCC------------------------------------------CCcEEEEEECCccceEccE
Confidence 7899999999998765554 9999999997666689999
Q ss_pred ccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC---CeeeEEEeccccccccCc-eeEEEEEccCCCCC-CCCCCceE
Q 006854 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS-PPKPGASI 173 (628)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~---~~~iG~~~i~l~~l~~~~-~~~~w~~L~~~~~~-~~~~~g~i 173 (628)
++++.||.|||+|.|.+.. ...|.|+|||++.++ +++||.+.+++.++.... ....|++|...... .....|+|
T Consensus 40 ~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v 118 (123)
T cd08382 40 AKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKI 118 (123)
T ss_pred EcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEE
Confidence 9999999999999999976 778999999999886 479999999999987433 34679999444321 23446888
Q ss_pred EEEE
Q 006854 174 QLEL 177 (628)
Q Consensus 174 ~l~l 177 (628)
.+++
T Consensus 119 ~~~~ 122 (123)
T cd08382 119 VVSL 122 (123)
T ss_pred EEEe
Confidence 8876
No 61
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.60 E-value=9.2e-16 Score=142.91 Aligned_cols=114 Identities=22% Similarity=0.324 Sum_probs=93.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..+.|.|+|++|+||+.++.... .++||||++++.+
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~----------------------------------------~~~DpYVKv~l~~~~~k 52 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLL----------------------------------------LGIDVSVKVTLKHQNAK 52 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCC----------------------------------------CCCCeEEEEEEEcCCcc
Confidence 46889999999999998763211 1289999999865
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~ 166 (628)
..+.||++++++.||+|||.|.|.++.. ...|.|+|||.|.++ +++||.+.+++.. .|+..++|..|+...+++
T Consensus 53 ~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~ 130 (138)
T cd08407 53 LKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQ 130 (138)
T ss_pred cceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCc
Confidence 2356999999999999999999998874 467999999999998 9999999999974 677788999998776665
Q ss_pred CCCC
Q 006854 167 PKPG 170 (628)
Q Consensus 167 ~~~~ 170 (628)
...+
T Consensus 131 va~W 134 (138)
T cd08407 131 IAMW 134 (138)
T ss_pred hhEE
Confidence 5433
No 62
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.59 E-value=1e-14 Score=132.96 Aligned_cols=101 Identities=28% Similarity=0.441 Sum_probs=85.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (628)
.+.|.|+|++|++|+.++..+. +||||++.+.+ .
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 52 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL------------------------------------------RNPYVKVYLLPDRSEK 52 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC------------------------------------------CCCEEEEEEccCCCcc
Confidence 4789999999999998775554 99999999865 3
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecC----CCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
.+.||++++++.||.|||+|.|.+.. ....|.|+|||.+.++ +++||.+.++|.+.. ......||+|
T Consensus 53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 45799999999999999999998644 2467999999999887 899999999999833 3345689998
No 63
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.59 E-value=8.7e-15 Score=134.04 Aligned_cols=105 Identities=22% Similarity=0.367 Sum_probs=90.0
Q ss_pred eEeec--eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854 12 VIYLH--GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (628)
Q Consensus 12 ~~~~~--g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~ 89 (628)
+.|-. +.|.|+|++|+||++++..+. +||||++.+.
T Consensus 9 l~Y~~~~~~L~V~Vi~a~nL~~~~~~~~------------------------------------------~d~yVk~~ll 46 (124)
T cd08389 9 FEYDPSARKLTVTVIRAQDIPTKDRGGA------------------------------------------SSWQVHLVLL 46 (124)
T ss_pred EEECCCCCEEEEEEEEecCCCchhcCCC------------------------------------------CCcEEEEEEc
Confidence 34444 789999999999998775443 8999999885
Q ss_pred C--eeeeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 90 Q--ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 90 ~--~~~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
+ ..+.||+++++ .||+|||+|.|+ +... ...|.|+|||++.++ +++||.+.|+|+++..+.....|++|
T Consensus 47 p~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 47 PSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred cCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 5 44679999988 999999999998 5543 567999999999988 99999999999999988889999998
No 64
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.59 E-value=1.3e-15 Score=141.67 Aligned_cols=111 Identities=23% Similarity=0.354 Sum_probs=91.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..+.|.|+|++|++|+.++..+. +||||++++.+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~------------------------------------------~DpyVkv~l~~~~~~ 50 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTT------------------------------------------ADPFVKVYLLQDGRK 50 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCcc
Confidence 35789999999999998775554 99999999854
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~ 166 (628)
..+.||++++++.||+|||+|.|.++.. ...|.|+|||+|.++ +++||.+.|+.. ..|+..++|..|+...+++
T Consensus 51 ~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~ 128 (136)
T cd08406 51 ISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKP 128 (136)
T ss_pred ccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCe
Confidence 1245899999999999999999998763 567999999999887 999999999776 4567778899987776665
Q ss_pred CCC
Q 006854 167 PKP 169 (628)
Q Consensus 167 ~~~ 169 (628)
...
T Consensus 129 v~~ 131 (136)
T cd08406 129 VAM 131 (136)
T ss_pred eeE
Confidence 433
No 65
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.58 E-value=7.5e-15 Score=134.15 Aligned_cols=113 Identities=25% Similarity=0.428 Sum_probs=94.5
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (628)
+|+|+|++|++|+..+..+. +||||++.+.+....+|+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~------------------------------------------~dpYv~v~~~~~~~~~T~ 38 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK------------------------------------------MKVYAVVWIDPSHKQSTP 38 (125)
T ss_pred CEEEEEEEcccCCCCCcccC------------------------------------------CceEEEEEECCCcccccc
Confidence 58999999999997765443 999999999884557999
Q ss_pred ccc-CCCCCeEeeEEEEEecCC-----CceEEEEEEEcCCCC-CeeeEEEeccccccccCce-----eEEEEEccCCCCC
Q 006854 98 VLK-NSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----ISRWYDIIAPSGS 165 (628)
Q Consensus 98 v~~-~~~~P~wne~f~~~~~~~-----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~ 165 (628)
+.. .+.||.|||.|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+.. ...||+|..+.|+
T Consensus 39 ~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~ 118 (125)
T cd04051 39 VDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK 118 (125)
T ss_pred cccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC
Confidence 986 489999999999999887 578999999999866 8999999999999986554 3689999776654
Q ss_pred CCCCCceEEE
Q 006854 166 PPKPGASIQL 175 (628)
Q Consensus 166 ~~~~~g~i~l 175 (628)
..|.|++
T Consensus 119 ---~~G~~~~ 125 (125)
T cd04051 119 ---PQGVLNF 125 (125)
T ss_pred ---cCeEEeC
Confidence 5588764
No 66
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.58 E-value=2.3e-14 Score=138.27 Aligned_cols=145 Identities=23% Similarity=0.272 Sum_probs=109.7
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~ 320 (628)
.++++.++++|.+|+++|+|+.|.|++.. .. . ...|.++|.+|+++||+|+||+ |.......
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----~~-----~--~~~l~~~L~~a~~rGv~V~il~-~~~~~~~~------ 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI----TE-----Y--GPVILDALLAAARRGVKVRILV-DEWSNTDL------ 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc----cc-----c--chHHHHHHHHHHHCCCEEEEEE-cccccCCc------
Confidence 57899999999999999999999987632 01 1 2689999999999999999997 55432210
Q ss_pred CcccCChHHHHhhhccC---CceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCC
Q 006854 321 GVMATHDEETKKFFKHS---SVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (628)
Q Consensus 321 ~~~~~~~~~~~~~l~~~---gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r 397 (628)
.......+.+... |+.+...+... ....++|+|++|||++ ++++||.|+++.+
T Consensus 82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~------------~~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~ 137 (176)
T cd00138 82 ----KISSAYLDSLRALLDIGVRVFLIRTDK------------TYGGVLHTKLVIVDDE--------TAYIGSANLDGRS 137 (176)
T ss_pred ----hHHHHHHHHHHHhhcCceEEEEEcCCc------------ccccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence 0123445555544 78876422110 0235889999999998 9999999999955
Q ss_pred CCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH--HHHHHHHHHHHHHhhh
Q 006854 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKA 459 (628)
Q Consensus 398 ~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp--av~~l~~~F~~rW~~~ 459 (628)
|. .++|..+.+++| +|+++.+.|...|+..
T Consensus 138 ~~--------------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 LT--------------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred hh--------------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 42 457999999999 7999999999999874
No 67
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=2.4e-14 Score=128.94 Aligned_cols=96 Identities=26% Similarity=0.479 Sum_probs=75.8
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEE
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~ 155 (628)
+||||++.+.+...++|+++++ .||.|||+|.|.+... ...|.|.+||.+... +..+|.+. +..+..+...+.
T Consensus 18 ~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~--l~~~~~~~~~~~ 94 (117)
T cd08383 18 RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVA--LSKLDLGQGKDE 94 (117)
T ss_pred CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEE--ecCcCCCCccee
Confidence 9999999998877789999999 9999999999999874 356788888887665 56666654 555555777899
Q ss_pred EEEccCCCCCCCCCCceEEEEEEE
Q 006854 156 WYDIIAPSGSPPKPGASIQLELKF 179 (628)
Q Consensus 156 w~~L~~~~~~~~~~~g~i~l~l~y 179 (628)
||+|...++ .....|+|+|+++|
T Consensus 95 w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 95 WFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred EEECccCCC-CCCcCceEEEEEEC
Confidence 999954333 33467999999986
No 68
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.2e-14 Score=132.28 Aligned_cols=104 Identities=27% Similarity=0.457 Sum_probs=92.8
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (628)
|.|.|+|++|++|+..+..+. +||||++.+.+....+|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT 38 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK------------------------------------------IDPYVRVLVNGIVKGRT 38 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC------------------------------------------cCCEEEEEECCEEeece
Confidence 689999999999998765554 99999999987777899
Q ss_pred ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCC
Q 006854 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (628)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 163 (628)
++++++.||.|||.|.|.+......|.|+|||++.++ +++||.+.+++.++..+ ..+.||.|++.+
T Consensus 39 ~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 39 VTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999999999999999887789999999999988 89999999999999866 668899987654
No 69
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.58 E-value=6e-15 Score=132.28 Aligned_cols=98 Identities=28% Similarity=0.465 Sum_probs=84.7
Q ss_pred eEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--eee
Q 006854 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~ 93 (628)
|.|.|+|++|++|+.++.. +. +||||++.+.+ ...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~~~~~~ 38 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS------------------------------------------SDPYVTASFAKFGKPL 38 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC------------------------------------------CCccEEEEEccCCCcc
Confidence 7899999999999987755 43 99999999854 345
Q ss_pred eeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 94 ~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
.+|++++++.||.|||.|.|.+... ...|.|+|||++.++ +++||.+.+++.++. ...+|+++
T Consensus 39 ~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~---~~~~~~~~ 106 (111)
T cd04041 39 YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI---EDRNWMGR 106 (111)
T ss_pred EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh---cCCCCCcc
Confidence 7999999999999999999987664 467999999999987 899999999999988 34578887
No 70
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.58 E-value=2.9e-14 Score=135.04 Aligned_cols=99 Identities=20% Similarity=0.417 Sum_probs=83.6
Q ss_pred CCcEEEEEE--C--CeeeeeeccccCCCCCeEeeEEEEEecCC---------CceEEEEEEEcCCC-C-CeeeEEEeccc
Q 006854 80 SDPYVTVVV--P--QATVARTRVLKNSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVF-G-AQIIGTAAIPA 144 (628)
Q Consensus 80 ~dpyv~v~l--~--~~~~~kT~v~~~~~~P~wne~f~~~~~~~---------~~~l~i~v~d~d~~-~-~~~iG~~~i~l 144 (628)
+||||++++ + ...+.||+++++|.||+|||+|.|.+... ...|.|+|||.+.+ + |++||++.++|
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 999999997 2 24568999999999999999999999765 34699999999886 4 99999999999
Q ss_pred cccccCceeEEEEEccCCCCCCCCCCceEEEEEEEee
Q 006854 145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (628)
Q Consensus 145 ~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p 181 (628)
..+........|++|.... + ..+|+|+++++...
T Consensus 105 ~~l~~~~~~~~~~~L~~~~-k--~~Gg~l~v~ir~r~ 138 (155)
T cd08690 105 EPLETKCEIHESVDLMDGR-K--ATGGKLEVKVRLRE 138 (155)
T ss_pred ccccccCcceEEEEhhhCC-C--CcCCEEEEEEEecC
Confidence 9998887788899996433 2 46799999999654
No 71
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.58 E-value=1.7e-14 Score=132.89 Aligned_cols=102 Identities=27% Similarity=0.394 Sum_probs=85.7
Q ss_pred ceEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~ 92 (628)
.++|.|+|++|++|+.++.. +. +||||++.+.+ ..
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyV~v~l~~~~~~ 52 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGT------------------------------------------SDPYVKLQLLPEKEH 52 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCC------------------------------------------cCCEEEEEEeCCcCc
Confidence 56899999999999987654 32 89999999864 34
Q ss_pred eeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccC--ceeEEEEEc
Q 006854 93 VARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDI 159 (628)
Q Consensus 93 ~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~--~~~~~w~~L 159 (628)
+.||++++++.||.|||+|.|. ++.. ...|.|+|||++.++ +++||.+.++|.++... +....|.+|
T Consensus 53 ~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 53 KVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred eeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 5699999999999999999994 4432 346999999999887 99999999999999755 678889988
No 72
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.56 E-value=7.1e-15 Score=164.72 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=120.9
Q ss_pred CCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEE
Q 006854 226 ILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (628)
Q Consensus 226 ~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILv 305 (628)
...++++.+||+...+.++..++++|.+|+++|+|++..|-| + ..+.++|+.||+|||+||||+
T Consensus 328 ~~~~q~~~sgp~~~~~~i~~~~l~~I~~A~~~I~I~tpYf~p-------d---------~~l~~aL~~Aa~rGV~Vrii~ 391 (509)
T PRK12452 328 EGAVQIVASGPSSDDKSIRNTLLAVMGSAKKSIWIATPYFIP-------D---------QETLTLLRLSAISGIDVRILY 391 (509)
T ss_pred CeEEEEEeCCCCchhHHHHHHHHHHHHHhhhEEEEECCccCC-------C---------HHHHHHHHHHHHcCCEEEEEc
Confidence 345777888888877899999999999999999999865543 1 479999999999999999997
Q ss_pred ecCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceE
Q 006854 306 WDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT 385 (628)
Q Consensus 306 wD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~v 385 (628)
+..+..... ........+.|.++||++.. +.. ...|+|++|||++ +
T Consensus 392 -p~~~D~~~~--------~~a~~~~~~~L~~aGv~I~~---y~~--------------~~lHaK~~ivD~~--------~ 437 (509)
T PRK12452 392 -PGKSDSIIS--------DQASQSYFTPLLKAGASIYS---YKD--------------GFMHAKIVLVDDK--------I 437 (509)
T ss_pred -CCCCChHHH--------HHHHHHHHHHHHHcCCEEEE---ecC--------------CCeeeeEEEECCC--------E
Confidence 665432110 01134456778889999873 221 1359999999998 9
Q ss_pred EEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcc
Q 006854 386 AFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461 (628)
Q Consensus 386 afvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~ 461 (628)
|++||+|+....+. ..|.+..+...|+.|.+++..|.++|..+..
T Consensus 438 a~vGS~Nld~RS~~-------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~~ 482 (509)
T PRK12452 438 ATIGTANMDVRSFE-------------------------------LNYEIISVLYESETVHDIKRDFEDDFKHSTE 482 (509)
T ss_pred EEEeCcccCHhHhh-------------------------------hhhhccEEEECHHHHHHHHHHHHHHHHhCeE
Confidence 99999999884331 2567889999999999999999999987643
No 73
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.56 E-value=2.1e-14 Score=131.08 Aligned_cols=102 Identities=30% Similarity=0.468 Sum_probs=88.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--eee
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~ 93 (628)
.++|.|+|++|++|+.++..+. +||||++.+.+ ...
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 52 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKHK 52 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC------------------------------------------CCceEEEEECCCCCcc
Confidence 6789999999999998765554 89999999843 445
Q ss_pred eeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 94 ~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
.+|++++++.||.|||+|.|.+.+. ...|.|+|||++.++ +++||.+.++++++..+.....|+.|
T Consensus 53 ~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 53 LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 7999999999999999999975332 356999999999887 89999999999999988889999998
No 74
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.56 E-value=3.8e-15 Score=137.67 Aligned_cols=109 Identities=28% Similarity=0.423 Sum_probs=91.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~------------------------------------------~DpyV~v~l~~~~~~ 48 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGY------------------------------------------SDPFVKLYLKPDAGK 48 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence 45899999999999998776554 99999999854
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~ 166 (628)
..+.+|++++++.||.|||+|.|.+... ...|.|+|||.+..+ +++||.+.+++.. .++...+|++|+...+++
T Consensus 49 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 49 KSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred cCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence 3357999999999999999999998764 457999999999887 8999999999985 466678999997776654
Q ss_pred C
Q 006854 167 P 167 (628)
Q Consensus 167 ~ 167 (628)
.
T Consensus 127 ~ 127 (133)
T cd08384 127 I 127 (133)
T ss_pred h
Confidence 4
No 75
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.3e-14 Score=156.76 Aligned_cols=132 Identities=27% Similarity=0.375 Sum_probs=109.8
Q ss_pred EeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--
Q 006854 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (628)
Q Consensus 13 ~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-- 90 (628)
.+....|.|+|++|++|+.++..+ ++||||++++.+
T Consensus 163 d~~~~~L~V~V~qa~~Lp~~d~~g------------------------------------------~sdpyVK~~llPdk 200 (421)
T KOG1028|consen 163 DFELNLLTVRVIQAHDLPAKDRGG------------------------------------------TSDPYVKVYLLPDK 200 (421)
T ss_pred cccCCEEEEEEEEecCCCcccCCC------------------------------------------CCCCeeEEEEcCCC
Confidence 345677999999999999887322 299999999987
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~ 166 (628)
..+.+|++.++++||.|||+|.|.++.. ...|.++|||.|+|+ +++||.+.++|..+........|.+|.......
T Consensus 201 ~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~ 280 (421)
T KOG1028|consen 201 KGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS 280 (421)
T ss_pred CCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCc
Confidence 3467999999999999999999997774 567999999999999 999999999999988777778899996543333
Q ss_pred CCCCceEEEEEEEeecCCCC
Q 006854 167 PKPGASIQLELKFTPCDKNP 186 (628)
Q Consensus 167 ~~~~g~i~l~l~y~p~~~~~ 186 (628)
....|+|.++|+|.|++..-
T Consensus 281 ~~~~gel~~sL~Y~p~~g~l 300 (421)
T KOG1028|consen 281 EELAGELLLSLCYLPTAGRL 300 (421)
T ss_pred ccccceEEEEEEeecCCCeE
Confidence 33448999999999985433
No 76
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.55 E-value=1.7e-13 Score=156.16 Aligned_cols=203 Identities=15% Similarity=0.122 Sum_probs=150.9
Q ss_pred chHHHHHHHHHhccc-----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEec---CCCccC
Q 006854 242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD---DKTSHD 313 (628)
Q Consensus 242 ~~f~~l~~aI~~Ak~-----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD---~~gs~~ 313 (628)
+-|..+++.|++|.+ +|.++.|.+.. ...|.++|.+||++|++|++|+ + -.+.
T Consensus 339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~ii~aL~~Aa~~Gk~V~v~v-eLkArfde-- 399 (672)
T TIGR03705 339 ESFDPVVEFLRQAAEDPDVLAIKQTLYRTSK----------------DSPIIDALIEAAENGKEVTVVV-ELKARFDE-- 399 (672)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEEEEecC----------------CcHHHHHHHHHHHcCCEEEEEE-Eehhhccc--
Confidence 568899999999997 99999998743 1589999999999999999998 6 2221
Q ss_pred cccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccC
Q 006854 314 KLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDL 393 (628)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni 393 (628)
..+-.+.+.|+++|++|++ .. ..++.|+|+++||.+.+| .-+..+++|.-|.
T Consensus 400 -----------~~ni~wa~~le~aG~~viy--g~--------------~~~k~H~K~~li~r~~~~-~~~~y~~igTgN~ 451 (672)
T TIGR03705 400 -----------EANIRWARRLEEAGVHVVY--GV--------------VGLKTHAKLALVVRREGG-ELRRYVHLGTGNY 451 (672)
T ss_pred -----------hhhHHHHHHHHHcCCEEEE--cC--------------CCeeeeeEEEEEEEeeCC-ceEEEEEecCCCC
Confidence 1245677889999999985 12 124779999999986211 1223566665555
Q ss_pred CCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeee-EeCHHHHHHHHHHHHHHhhhcccchhhhhhccc
Q 006854 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-LDGPAAYDVLINFEQRWRKATKLTELTFKFKRV 472 (628)
Q Consensus 394 ~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~-l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~ 472 (628)
... ....|+|+++. ..+..+.|+...|...|.......
T Consensus 452 n~~--------------------------------ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~--------- 490 (672)
T TIGR03705 452 HPK--------------------------------TARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK--------- 490 (672)
T ss_pred CCc--------------------------------ccccccceeEEEeChHHHHHHHHHHHHhhCCCcchh---------
Confidence 541 12479999999 889999999999999886432110
Q ss_pred ccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhcccccc
Q 006854 473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552 (628)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~ 552 (628)
+.. +- + + |.
T Consensus 491 -------------~~~---------------l~-----------------------~---~-----P~------------ 499 (672)
T TIGR03705 491 -------------FKH---------------LL-----------------------V---S-----PF------------ 499 (672)
T ss_pred -------------hHH---------------HH-----------------------h---C-----cc------------
Confidence 000 00 0 1 11
Q ss_pred ccCcchhhHHHHHHHHHHHhccc----eEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 553 ~~~~~~e~~I~~ay~~aI~~Ak~----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
..+..+.+.+.+.|++|++ +|+|.++| +++. +|..+|..|+.+|+++++||
T Consensus 500 ----~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~-l~D~-----------------~ii~aL~~As~aGV~V~Liv 554 (672)
T TIGR03705 500 ----TLRKRLLELIDREIENARAGKPARIIAKMNS-LVDP-----------------DLIDALYEASQAGVKIDLIV 554 (672)
T ss_pred ----hHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC-CCCH-----------------HHHHHHHHHHHCCCeEEEEE
Confidence 1246788999999999999 99999999 4554 79999999999999999998
No 77
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.55 E-value=3e-14 Score=153.89 Aligned_cols=158 Identities=19% Similarity=0.181 Sum_probs=107.2
Q ss_pred ecCCCCccCC----cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHh-hcCCEEEEEE
Q 006854 231 PLDGGKLYKP----GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLV 305 (628)
Q Consensus 231 ~l~~g~~y~~----~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA-~rGV~VrILv 305 (628)
.+.+||+..+ ....++++++|.+|+++|+|++|.|-|.. +.+.. ......+.++|.+|| +|||+||||+
T Consensus 201 ~~~s~P~~~~~~~~~~~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~~---~~~~~~i~~AL~~AAa~RGV~VRILv 274 (369)
T PHA03003 201 FFSDSPEHLLGYSRTLDADVVLHKIKSAKKSIDLELLSLVPVI---REDDK---TTYWPDIYNALIRAAINRGVKVRLLV 274 (369)
T ss_pred EEecCChHHcCCCCCcCHHHHHHHHHHHhhEEEEEEeccccEE---eeCCC---CccHHHHHHHHHHHHHcCCCEEEEEE
Confidence 3445555432 23578999999999999999999886632 22210 000248999999985 9999999996
Q ss_pred ecCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceE
Q 006854 306 WDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT 385 (628)
Q Consensus 306 wD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~v 385 (628)
|..+.... ......+.|.++|+++.+... ++ ...+|+|++|||++ +
T Consensus 275 -~~~~~~~~-----------~~~~~~~~L~~~G~~~~i~vr-------i~-------~~~~H~K~~VVD~~--------~ 320 (369)
T PHA03003 275 -GSWKKNDV-----------YSMASVKSLQALCVGNDLSVK-------VF-------RIPNNTKLLIVDDE--------F 320 (369)
T ss_pred -ecCCcCCc-----------hhhhHHHHHHHcCCCCCceEe-------ee-------cCCCCceEEEEcCC--------E
Confidence 87653211 023456678888855210000 00 01269999999998 9
Q ss_pred EEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhh
Q 006854 386 AFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKA 459 (628)
Q Consensus 386 afvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~ 459 (628)
||+||+|+...++.. ..|.++ ...+|++|.+++..|.++|+.+
T Consensus 321 a~iGS~N~d~~s~~~------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 321 AHITSANFDGTHYLH------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred EEEeccccCchhhcc------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 999999998854432 123343 2568999999999999999864
No 78
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.55 E-value=6.8e-15 Score=135.82 Aligned_cols=114 Identities=20% Similarity=0.320 Sum_probs=90.0
Q ss_pred eeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (628)
Q Consensus 11 ~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~ 90 (628)
......|+|+|+|++|+||+++...+ ..||||+|++-.
T Consensus 8 ~Y~p~~~rLtV~VikarnL~~~~~~~------------------------------------------~~dpYVKV~L~~ 45 (135)
T cd08692 8 CFQAVNSRIQLQILEAQNLPSSSTPL------------------------------------------TLSFFVKVGMFS 45 (135)
T ss_pred eecCcCCeEEEEEEEccCCCcccCCC------------------------------------------CCCcEEEEEEEE
Confidence 34556788999999999999753222 279999999843
Q ss_pred ----eeeeeeccccCCC-CCeEeeEEEEEecCCC--ceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854 91 ----ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (628)
Q Consensus 91 ----~~~~kT~v~~~~~-~P~wne~f~~~~~~~~--~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 162 (628)
..+.||++++++. +|.|||+|.|.++.+. ..|.|+|||++..+ +++||.+.++.+.. .++..++|.++...
T Consensus 46 ~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~ 124 (135)
T cd08692 46 TGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIAN 124 (135)
T ss_pred CCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhC
Confidence 4457999999995 6999999999998763 34688999999887 99999999999763 34557899998776
Q ss_pred CCCCC
Q 006854 163 SGSPP 167 (628)
Q Consensus 163 ~~~~~ 167 (628)
.+++.
T Consensus 125 pr~~i 129 (135)
T cd08692 125 PEKVV 129 (135)
T ss_pred CCCee
Confidence 66544
No 79
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=6.3e-14 Score=125.99 Aligned_cols=102 Identities=28% Similarity=0.478 Sum_probs=89.9
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 006854 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (628)
Q Consensus 19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v 98 (628)
|+|+|++|++|+..+..+. +||||++.+.+....+|++
T Consensus 1 l~v~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~T~v 38 (115)
T cd04040 1 LTVDVISAENLPSADRNGK------------------------------------------SDPFVKFYLNGEKVFKTKT 38 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC------------------------------------------CCCeEEEEECCCcceeece
Confidence 5799999999998765443 8999999998766689999
Q ss_pred ccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (628)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 162 (628)
+.++.+|.|||+|.|.+... ...+.|+|||++..+ +++||.+.+++.++..+.....|++|...
T Consensus 39 ~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 39 IKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred ecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCC
Confidence 99999999999999998864 567999999999887 89999999999999988888999999533
No 80
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.54 E-value=8.4e-15 Score=136.10 Aligned_cols=109 Identities=27% Similarity=0.440 Sum_probs=91.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--e-
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A- 91 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~- 91 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+ .
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~ 50 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGL------------------------------------------ADPYVKVNLYYGKKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCeEEEEEEEcCCce
Confidence 46789999999999998776554 99999999853 2
Q ss_pred -eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854 92 -TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (628)
Q Consensus 92 -~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~ 166 (628)
...||++++++.||.|||+|.|.++.. ...|.|+|||++.++ +++||.+.+++.. .+....+|++|....+++
T Consensus 51 ~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~ 128 (136)
T cd08404 51 ISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQ 128 (136)
T ss_pred eeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCe
Confidence 346899999999999999999998763 456899999999998 8999999999988 466678899997666654
Q ss_pred C
Q 006854 167 P 167 (628)
Q Consensus 167 ~ 167 (628)
.
T Consensus 129 i 129 (136)
T cd08404 129 I 129 (136)
T ss_pred e
Confidence 3
No 81
>PRK05443 polyphosphate kinase; Provisional
Probab=99.54 E-value=2.7e-13 Score=155.41 Aligned_cols=206 Identities=15% Similarity=0.146 Sum_probs=154.2
Q ss_pred chHHHHHHHHHhccc-----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccc
Q 006854 242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (628)
Q Consensus 242 ~~f~~l~~aI~~Ak~-----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~ 316 (628)
+-|..+++.|++|.+ +|.++.|.+.. ...+.++|+.||++||+|+||+ +.-. .
T Consensus 348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~iv~aL~~Aa~~Gk~V~vlv-e~ka-r---- 405 (691)
T PRK05443 348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTSK----------------DSPIVDALIEAAENGKQVTVLV-ELKA-R---- 405 (691)
T ss_pred cCchHHHHHHHHhccCCCeeEEEEEEEEecC----------------CHHHHHHHHHHHHcCCEEEEEE-ccCc-c----
Confidence 568899999999998 99999998743 2589999999999999999997 5432 1
Q ss_pred ccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (628)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~ 396 (628)
+.......+.+.|+++||++++ .+++ +..|.|+++||++.++ .-+.+|++|+.|+...
T Consensus 406 -----fde~~n~~~~~~L~~aGv~V~y--~~~~--------------~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~~ 463 (691)
T PRK05443 406 -----FDEEANIRWARRLEEAGVHVVY--GVVG--------------LKTHAKLALVVRREGG-GLRRYVHLGTGNYNPK 463 (691)
T ss_pred -----ccHHHHHHHHHHHHHcCCEEEE--ccCC--------------ccceeEEEEEEeecCC-ceeEEEEEcCCCCCcc
Confidence 1122245678889999999974 2222 3569999999997222 2345899999999982
Q ss_pred CCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeE-eCHHHHHHHHHHHHHHhhhcccchhhhhhcccccc
Q 006854 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL-DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHW 475 (628)
Q Consensus 397 r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l-~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~ 475 (628)
. ...|.|+.+.. .+..+.++...|...|.......
T Consensus 464 s--------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~------------ 499 (691)
T PRK05443 464 T--------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK------------ 499 (691)
T ss_pred h--------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCcccc------------
Confidence 1 13678999994 55699999999999985422110
Q ss_pred cccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccC
Q 006854 476 RDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKD 555 (628)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~ 555 (628)
+. .++-+ |.
T Consensus 500 ----------~~-------------------------------------~l~~s---------P~--------------- 508 (691)
T PRK05443 500 ----------LR-------------------------------------KLLVS---------PF--------------- 508 (691)
T ss_pred ----------cc-------------------------------------EEeec---------Cc---------------
Confidence 00 00000 10
Q ss_pred cchhhHHHHHHHHHHHhccc----eEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 556 VVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 556 ~~~e~~I~~ay~~aI~~Ak~----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
.....+.+.+.+.|.+||+ +|+|.++| +++. +|.++|..|+.+|++++++|
T Consensus 509 -~~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~-l~d~-----------------~ii~aL~~As~~GV~V~liV 563 (691)
T PRK05443 509 -TLRERLLELIDREIANARAGKPARIIAKMNS-LVDP-----------------QIIDALYEASQAGVKIDLIV 563 (691)
T ss_pred -cHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCCH-----------------HHHHHHHHHHHCCCeEEEEE
Confidence 1146799999999999999 99999999 5554 79999999999999999998
No 82
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.54 E-value=3.8e-14 Score=126.67 Aligned_cols=96 Identities=22% Similarity=0.405 Sum_probs=80.1
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (628)
|.|.|+|++|++|+..+..+. .| .++||||++.++.. +.||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~-------------------------~~-------------~~~DPYv~v~~~~~-~~kT 41 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR-------------------------TG-------------FDMDPFVIISFGRR-VFRT 41 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC-------------------------CC-------------CccCceEEEEECCE-eEee
Confidence 789999999999998764321 00 12899999999765 4699
Q ss_pred ccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCc
Q 006854 97 RVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (628)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~ 151 (628)
++++++.||+|||.|.|.+... ...|.|+|||++.++ +++||++.++|++|..+.
T Consensus 42 ~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 42 SWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred eeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999998654 346899999999987 999999999999988653
No 83
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.54 E-value=4e-14 Score=128.85 Aligned_cols=102 Identities=25% Similarity=0.442 Sum_probs=88.8
Q ss_pred ceEEEEEEEEeeCCCCCC-CCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~ 92 (628)
.+.|.|+|++|++|+.++ ..+. +||||++.+.+ ..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyV~v~l~~~~~~ 50 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH------------------------------------------CDPFVKVCLLPDERR 50 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC------------------------------------------CCcEEEEEEeeCCCC
Confidence 678999999999999876 3433 89999999853 34
Q ss_pred eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
..+|++++++.||+|||.|.|.+... ...|.|+|||.+..+ +++||++.++|+++........|++|
T Consensus 51 ~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 51 SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 57999999999999999999998764 457999999999887 89999999999999988888899998
No 84
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.53 E-value=5.2e-14 Score=133.13 Aligned_cols=117 Identities=29% Similarity=0.375 Sum_probs=87.5
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (628)
.|.|+|++|++|+.++..+. ...+. .+++ ...+.+||||+|.+++.+ .||+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~~--~~~~------------------------~~~~~~DPYV~V~~~g~~-~kT~ 51 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVKK--AFLG------------------------EKKELVDPYVEVSFAGQK-VKTS 51 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--cccee--cccc------------------------CCCCCcCcEEEEEECCEe-eecc
Confidence 47899999999999885431 00000 0011 111238999999999866 5999
Q ss_pred cccCCCCCeEeeEEEEEecC--CCceEEEEEEEcCCCC-CeeeEEEeccccccccCce-------eEEEEEccCCC
Q 006854 98 VLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-------ISRWYDIIAPS 163 (628)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~--~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~-------~~~w~~L~~~~ 163 (628)
+++++.||+|||+|.|++.. ....|.|+|||+|..+ +++||.+.+++.++...+. ...|+.|+++.
T Consensus 52 v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 52 VKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred eEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 99999999999999998653 3568999999999986 9999999999999885432 24677776553
No 85
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=7.2e-14 Score=125.32 Aligned_cols=99 Identities=20% Similarity=0.383 Sum_probs=85.2
Q ss_pred CCCCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEecccccccc-CceeEE
Q 006854 78 ITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GELISR 155 (628)
Q Consensus 78 ~~~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~-~~~~~~ 155 (628)
+.+||||++.+++....+|++++++.||.|||.|.|.+.+. ...|.|.|+|.+.+++++||.+.++|.++.. +.....
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~ 90 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQ 90 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccce
Confidence 44899999999887678999999999999999999999875 4679999999998889999999999999853 445689
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEeec
Q 006854 156 WYDIIAPSGSPPKPGASIQLELKFTPC 182 (628)
Q Consensus 156 w~~L~~~~~~~~~~~g~i~l~l~y~p~ 182 (628)
||+|.. ...|+|++++.|.|.
T Consensus 91 w~~L~~------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 91 WFPLSG------NGQGRIRISALWKPV 111 (111)
T ss_pred eEECCC------CCCCEEEEEEEEecC
Confidence 999943 235999999999984
No 86
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.53 E-value=5.4e-14 Score=128.37 Aligned_cols=100 Identities=26% Similarity=0.515 Sum_probs=88.3
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (628)
|.|.|+|++|++|+..+..+. +||||++.+.... .+|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~~T 37 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK------------------------------------------IDPYVIIQCRTQE-RKS 37 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC------------------------------------------cCceEEEEECCEe-eee
Confidence 689999999999998765543 9999999997754 588
Q ss_pred ccccC-CCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 97 RVLKN-SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 97 ~v~~~-~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
++.++ +.||.|||+|.|.+..+ ...|.|+|||.+.+. +++||.+.+++.++..++....|++|
T Consensus 38 ~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 38 KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 88875 89999999999999886 467999999999887 89999999999999988788999999
No 87
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.52 E-value=7e-14 Score=125.25 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=70.8
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC-----CceEEEEEEEcCCCC-CeeeEEEeccccccccC---
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--- 150 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~-----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~--- 150 (628)
+||||++++++.+ .+|++++++.||.|||+|.|.+..+ ...|.|+|||.+.++ +++||++.++|+++..+
T Consensus 21 ~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~ 99 (111)
T cd04011 21 IDPVVKVEVGGQK-KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH 99 (111)
T ss_pred CCCEEEEEECCEe-eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCC
Confidence 8999999999765 6999999999999999999997553 357999999999887 89999999999999755
Q ss_pred ceeEEEEEccC
Q 006854 151 ELISRWYDIIA 161 (628)
Q Consensus 151 ~~~~~w~~L~~ 161 (628)
.....|++|.+
T Consensus 100 ~~~~~w~~L~~ 110 (111)
T cd04011 100 AFLRKWLLLTD 110 (111)
T ss_pred cceEEEEEeeC
Confidence 45688999964
No 88
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.52 E-value=1.7e-14 Score=134.04 Aligned_cols=110 Identities=28% Similarity=0.446 Sum_probs=91.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..++|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~ 50 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGT------------------------------------------SDPYVKVWLMYKDKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCCc
Confidence 45899999999999998765554 99999999842
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~ 166 (628)
....+|++++++.||.|||+|.|.++.. ...|.|+|||.+.++ +++||.+.+++.+. +...++|++|+...+++
T Consensus 51 ~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~ 128 (136)
T cd08405 51 VEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQP 128 (136)
T ss_pred cccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCc
Confidence 2346899999999999999999997643 457999999999987 89999999999876 55678899988776665
Q ss_pred CC
Q 006854 167 PK 168 (628)
Q Consensus 167 ~~ 168 (628)
..
T Consensus 129 ~~ 130 (136)
T cd08405 129 VA 130 (136)
T ss_pred hh
Confidence 43
No 89
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.52 E-value=8.5e-14 Score=133.42 Aligned_cols=103 Identities=26% Similarity=0.404 Sum_probs=87.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..|.|.|+|++|++|+..+..+. +||||++.+.+
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------------------~DPYVkv~l~~~~~~ 62 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT------------------------------------------SDSFVKCYLLPDKSK 62 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 45899999999999998775554 99999999843
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
..+.||++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++........|+.+
T Consensus 63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 3467999999999999999999985432 357999999999998 99999999999998866667788777
No 90
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.51 E-value=1e-14 Score=135.49 Aligned_cols=110 Identities=29% Similarity=0.489 Sum_probs=91.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..|+|.|+|++|++|+.++..+. +||||+|.+.+
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 50 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC------------------------------------------CCCeEEEEEEECCcc
Confidence 67899999999999998765554 99999999853
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~ 166 (628)
....+|++++++.||.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.. .++..++|++|+...+++
T Consensus 51 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~ 128 (136)
T cd08402 51 LKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRP 128 (136)
T ss_pred cceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCe
Confidence 2356899999999999999999998754 247899999999988 8999999999975 466678899998776554
Q ss_pred CC
Q 006854 167 PK 168 (628)
Q Consensus 167 ~~ 168 (628)
..
T Consensus 129 ~~ 130 (136)
T cd08402 129 IA 130 (136)
T ss_pred ee
Confidence 43
No 91
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.51 E-value=1.6e-14 Score=133.86 Aligned_cols=112 Identities=32% Similarity=0.473 Sum_probs=91.7
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-
Q 006854 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (628)
Q Consensus 12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~- 90 (628)
.....+.|+|+|++|++|+.++..+. +||||++.+.+
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~------------------------------------------~dpyvkv~l~~~ 46 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGF------------------------------------------SDPYVKVSLMCE 46 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeC
Confidence 34457889999999999998876654 99999999843
Q ss_pred ---eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCC
Q 006854 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (628)
Q Consensus 91 ---~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 163 (628)
....+|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++. ..+...++|++|+...
T Consensus 47 ~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~ 124 (134)
T cd08403 47 GRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANP 124 (134)
T ss_pred CcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCC
Confidence 2356999999999999999999998653 246899999999998 999999999987 4455567899998776
Q ss_pred CCCC
Q 006854 164 GSPP 167 (628)
Q Consensus 164 ~~~~ 167 (628)
+++.
T Consensus 125 ~~~~ 128 (134)
T cd08403 125 RKPI 128 (134)
T ss_pred CCee
Confidence 6643
No 92
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.50 E-value=1.8e-14 Score=134.25 Aligned_cols=108 Identities=20% Similarity=0.417 Sum_probs=90.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (628)
.++|.|+|++|+||+.++ .+. +||||++.+.+ .
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~------------------------------------------~d~yVkv~l~~~~~~~ 50 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAH------------------------------------------TSVYVKVSLMIHNKVV 50 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCC------------------------------------------CCeEEEEEEEECCEEe
Confidence 578999999999999876 443 99999999864 1
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~ 166 (628)
...||++++++.||.|||+|.|.++.. ...|.|+||+.+..+ +++||++.++......++..++|..|....+++
T Consensus 51 ~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~ 129 (137)
T cd08409 51 KTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKEL 129 (137)
T ss_pred eeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCc
Confidence 346999999999999999999998753 357999999999877 899999999987777788888999987665543
No 93
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.50 E-value=8.6e-14 Score=131.85 Aligned_cols=102 Identities=25% Similarity=0.428 Sum_probs=87.6
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe
Q 006854 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (628)
Q Consensus 12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~ 91 (628)
.....+.|.|+|++|++|++++..+. +||||++.+.+.
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~ 60 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGF------------------------------------------SDPYCMLGIVPA 60 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCC------------------------------------------CCceEEEEEccc
Confidence 34567899999999999998887665 999999998641
Q ss_pred ----------------------------eeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEec
Q 006854 92 ----------------------------TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAI 142 (628)
Q Consensus 92 ----------------------------~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i 142 (628)
...+|++++++.||.|||+|.|.+... ...|.|+|||++ +++||.+.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i 137 (153)
T cd08676 61 SRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNI 137 (153)
T ss_pred ccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEE
Confidence 246899999999999999999998764 567999999998 899999999
Q ss_pred cccccccCceeEEEEEc
Q 006854 143 PAHTIATGELISRWYDI 159 (628)
Q Consensus 143 ~l~~l~~~~~~~~w~~L 159 (628)
+++++. +...++||+|
T Consensus 138 ~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 138 PLKDLP-SCGLDSWFKL 153 (153)
T ss_pred EHHHhC-CCCCCCeEeC
Confidence 999998 4457999987
No 94
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.50 E-value=1.4e-13 Score=126.88 Aligned_cols=110 Identities=26% Similarity=0.432 Sum_probs=93.6
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (628)
Q Consensus 10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~ 89 (628)
+.+.|-.+.|.|+|++|++|+..+..+. +||||++.+.
T Consensus 6 ~~~~~~~~~l~v~i~~a~nL~~~~~~~~------------------------------------------~dpyv~v~~~ 43 (131)
T cd04026 6 LKISVKDNKLTVEVREAKNLIPMDPNGL------------------------------------------SDPYVKLKLI 43 (131)
T ss_pred EEEEECCCEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCcEEEEEE
Confidence 3467888999999999999997664443 8999999986
Q ss_pred C----eeeeeeccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854 90 Q----ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (628)
Q Consensus 90 ~----~~~~kT~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 162 (628)
+ ....+|++++++.+|.|||+|.|.+... ...|.|+|||++.++ +++||.+.++++++... ....||+|.++
T Consensus 44 ~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 44 PDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred cCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 3 3567999999999999999999998764 457999999999886 89999999999999854 67889999654
No 95
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.50 E-value=3.2e-14 Score=132.23 Aligned_cols=109 Identities=24% Similarity=0.456 Sum_probs=88.1
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..|.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyV~v~l~~~~~~ 49 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQG------------------------------------------SDPFVKIQLVHGLKL 49 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 56899999999999998876654 99999999733
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCc-eeEEEEEccCCCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS 165 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~-~~~~w~~L~~~~~~ 165 (628)
....+|++++++.||.|||+|.|.++.. ...|.|+|||++..+ +++||.+.|.. +..+. ..++|+.|+.+.++
T Consensus 50 ~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~--~~~~~~~~~~W~~l~~~~~~ 127 (135)
T cd08410 50 IKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQ--YSSGPSETNHWRRMLNSQRT 127 (135)
T ss_pred cceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcC--ccCCchHHHHHHHHHhCCCC
Confidence 2346999999999999999999998653 346899999999887 99999998765 33333 46789999877666
Q ss_pred CC
Q 006854 166 PP 167 (628)
Q Consensus 166 ~~ 167 (628)
+.
T Consensus 128 ~~ 129 (135)
T cd08410 128 AV 129 (135)
T ss_pred Ee
Confidence 44
No 96
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.50 E-value=1.2e-13 Score=128.83 Aligned_cols=101 Identities=21% Similarity=0.410 Sum_probs=86.9
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC---eeeee
Q 006854 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---ATVAR 95 (628)
Q Consensus 19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---~~~~k 95 (628)
|.|+|++|++|+.+ ..+. +||||++.+.. ..+.+
T Consensus 1 L~V~Vi~A~~L~~~-~~g~------------------------------------------~dPyv~v~~~~~~~~~~~r 37 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT------------------------------------------CDPFARVTLNYSSKTDTKR 37 (137)
T ss_pred CEEEEEEccCCCcc-cCCC------------------------------------------CCcEEEEEEecCCcCCeec
Confidence 67999999999876 4443 99999999984 45689
Q ss_pred eccccCCCCCeEeeEEEEEecCC----------------CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEE
Q 006854 96 TRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (628)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~----------------~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~ 158 (628)
|++++++.+|.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.++........||+
T Consensus 38 T~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~ 117 (137)
T cd08675 38 TKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYF 117 (137)
T ss_pred cceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEe
Confidence 99999999999999999997764 357899999999986 9999999999999987777899999
Q ss_pred ccCC
Q 006854 159 IIAP 162 (628)
Q Consensus 159 L~~~ 162 (628)
|...
T Consensus 118 L~~~ 121 (137)
T cd08675 118 LQPR 121 (137)
T ss_pred cCCc
Confidence 9433
No 97
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.50 E-value=3e-14 Score=133.00 Aligned_cols=110 Identities=19% Similarity=0.362 Sum_probs=89.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC---e
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A 91 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---~ 91 (628)
..++|.|+|++|+||+.++..+. +||||++.+.+ .
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~------------------------------------------~dpyVkv~llp~~~~ 50 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKA------------------------------------------PDTYVKLTLLNSDGQ 50 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCC------------------------------------------CCeeEEEEEEeCCCc
Confidence 35899999999999998765554 99999999854 1
Q ss_pred --eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854 92 --TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (628)
Q Consensus 92 --~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~ 165 (628)
.+.||++++++.||+|||+|.|.++.. ...|.|+|||.+.++ +++||++.+++.... .+..++|+.+..+.++
T Consensus 51 ~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~ 129 (138)
T cd08408 51 EISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQ 129 (138)
T ss_pred ceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCC
Confidence 246999999999999999999998863 457999999999887 999999999987433 2344689988776665
Q ss_pred CC
Q 006854 166 PP 167 (628)
Q Consensus 166 ~~ 167 (628)
+.
T Consensus 130 ~v 131 (138)
T cd08408 130 QV 131 (138)
T ss_pred EE
Confidence 44
No 98
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.49 E-value=1.3e-14 Score=151.69 Aligned_cols=108 Identities=26% Similarity=0.429 Sum_probs=96.4
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-
Q 006854 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (628)
Q Consensus 12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~- 90 (628)
+..-...|+|+|.+|+||-+||.+|. +||||++.+-+
T Consensus 175 ~~~~~~~l~v~i~ea~NLiPMDpNGl------------------------------------------SDPYvk~kliPD 212 (683)
T KOG0696|consen 175 AHIKRDVLTVTIKEAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPD 212 (683)
T ss_pred EEecCceEEEEehhhccccccCCCCC------------------------------------------CCcceeEEeccC
Confidence 45567789999999999999999997 99999999854
Q ss_pred ---eeeeeeccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (628)
Q Consensus 91 ---~~~~kT~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 162 (628)
..++||++++.++||+|||+|+|.+.+. ...|.|+|||+|+-+ ++|+|...+.+++|. .++.++||.|++.
T Consensus 213 ~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 213 PKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQ 289 (683)
T ss_pred CcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhh
Confidence 5567999999999999999999999886 467999999999998 999999999999998 4578899999755
No 99
>PRK13912 nuclease NucT; Provisional
Probab=99.49 E-value=5.2e-13 Score=129.83 Aligned_cols=142 Identities=17% Similarity=0.255 Sum_probs=100.6
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~ 320 (628)
.+++..++++|++|+++|+|+.|.|.. ..+.++|.+|++|||+||||+ |..++...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~~-----------------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAIYSFTH-----------------KDIAKALKSAAKRGVKISIIY-DYESNHNN------ 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEEEEEch-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence 357899999999999999999998742 479999999999999999996 88754321
Q ss_pred CcccCChHHHHhhh-ccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCC
Q 006854 321 GVMATHDEETKKFF-KHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD 399 (628)
Q Consensus 321 ~~~~~~~~~~~~~l-~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d 399 (628)
.......+ +.+++++......... .......+|+|++|||++ ++++||.|++...+.
T Consensus 88 ------~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~ 145 (177)
T PRK13912 88 ------DQSTIGYLDKYPNIKVCLLKGLKAK--------NGKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFE 145 (177)
T ss_pred ------chhHHHHHHhCCCceEEEecCcccc--------CcccccccceeEEEEcCC--------EEEEeCCCCChhHhc
Confidence 11111122 2346665531110000 001234689999999998 999999999985543
Q ss_pred CCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhc
Q 006854 400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (628)
Q Consensus 400 ~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~ 460 (628)
. =+++.+.++.| .+.++.+.|.+.|..+.
T Consensus 146 ~--------------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s~ 175 (177)
T PRK13912 146 N--------------------------------NYEVLLITDDTETILKAKEYFQKMLGSCV 175 (177)
T ss_pred c--------------------------------CCceEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 2 13567778887 66999999999997653
No 100
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.49 E-value=3.7e-14 Score=130.67 Aligned_cols=107 Identities=32% Similarity=0.544 Sum_probs=91.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe----
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA---- 91 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~---- 91 (628)
.++|.|+|++|++|+..+..+. +||||++.+.+.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 50 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL------------------------------------------SDPYVKVSLLQGGKKL 50 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCcEEEEEEEcCCeEe
Confidence 4789999999999997764443 899999998652
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~ 166 (628)
...+|++++++.+|.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++++ .+...++|++|....+++
T Consensus 51 ~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~ 127 (134)
T cd00276 51 KKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKP 127 (134)
T ss_pred eeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCc
Confidence 356999999999999999999998775 467999999999876 8999999999998 677788999998776554
No 101
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.48 E-value=2.4e-13 Score=127.82 Aligned_cols=91 Identities=31% Similarity=0.645 Sum_probs=81.7
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (628)
|.|.|+|++|++|+..+. +. +||||++.+++.. .+|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~------------------------------------------sDPYV~v~~g~~~-~kT 37 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS------------------------------------------SDPYVVLTLGNQK-VKT 37 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC------------------------------------------cCcEEEEEECCEE-EEe
Confidence 789999999999987654 32 9999999998755 799
Q ss_pred ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCc
Q 006854 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (628)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~ 151 (628)
++++++.||+|||+|.|.+..+...|.|+|||++.++ +++||.+.+++.++....
T Consensus 38 ~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 38 RVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred eeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence 9999999999999999999988888999999999998 899999999999887543
No 102
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.48 E-value=5.5e-13 Score=122.25 Aligned_cols=97 Identities=24% Similarity=0.396 Sum_probs=79.6
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCce-----e
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----I 153 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~-----~ 153 (628)
+||||++.+.+....+|++++++.+|.|||+|.|.+.. ...|.|+|||++..+ +++||.+.++|.++..... .
T Consensus 22 ~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 100 (125)
T cd04021 22 PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENV 100 (125)
T ss_pred CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccce
Confidence 99999999987656899999999999999999999864 578999999999987 8999999999998874322 3
Q ss_pred EEEEEccCCCCCCCCCCceEEEEE
Q 006854 154 SRWYDIIAPSGSPPKPGASIQLEL 177 (628)
Q Consensus 154 ~~w~~L~~~~~~~~~~~g~i~l~l 177 (628)
..|+++..+.....+..|+|.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 101 KLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEccCCCcceeeeeEEEEe
Confidence 469999644311345678988875
No 103
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.47 E-value=7.8e-13 Score=120.88 Aligned_cols=116 Identities=29% Similarity=0.522 Sum_probs=94.0
Q ss_pred EEEEEEEEeeCCCCCC--CCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-----
Q 006854 18 DLDLKIIRARRLPNMD--MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----- 90 (628)
.|+|+|++|++|+.++ ..+. .||||++++..
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 40 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI------------------------------------------VDPYVEVEIHGLPADD 40 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc------------------------------------------cCCEEEEEEEeCCCCC
Confidence 6899999999999765 2332 89999999843
Q ss_pred eeeeeeccccCCC-CCeEeeEEEEEecCCC-ceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCC
Q 006854 91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (628)
Q Consensus 91 ~~~~kT~v~~~~~-~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~ 168 (628)
....+|+++.++. ||.|||+|.|.+..+. ..|.|+|||++..++++||.+.++++++..+ .+|++|.+..+. ..
T Consensus 41 ~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~-~~ 116 (128)
T cd00275 41 SAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGE-PL 116 (128)
T ss_pred CCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCC-CC
Confidence 3447999988765 9999999999987654 5689999999887889999999999999755 478999777665 33
Q ss_pred CCceEEEEEEE
Q 006854 169 PGASIQLELKF 179 (628)
Q Consensus 169 ~~g~i~l~l~y 179 (628)
..|.|.+++++
T Consensus 117 ~~~~l~v~~~~ 127 (128)
T cd00275 117 ELSTLFVHIDI 127 (128)
T ss_pred cceeEEEEEEE
Confidence 45899988875
No 104
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.46 E-value=3.8e-13 Score=124.58 Aligned_cols=92 Identities=29% Similarity=0.439 Sum_probs=80.2
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC------
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------ 90 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~------ 90 (628)
+.|.|+|++|++|+.++..+. +||||+|.+.+
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------------------~dPyv~v~l~~~~~~~~ 53 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS------------------------------------------SDPFVKVELLPRHLFPD 53 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCEEEEEEECCCcCcc
Confidence 789999999999998765554 99999999863
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC-----CceEEEEEEEcCCCC-CeeeEEEeccccccccC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG 150 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~-----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~ 150 (628)
....||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.++|+++...
T Consensus 54 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 54 VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred ccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 3467999999999999999999998763 457999999999998 99999999999998843
No 105
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.45 E-value=1.2e-12 Score=121.93 Aligned_cols=115 Identities=23% Similarity=0.379 Sum_probs=92.4
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--e----
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A---- 91 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~---- 91 (628)
.+.|++++|++|+ ++..+. +||||++++.+ .
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~------------------------------------------~DPyvki~~~~~~~~~~~ 38 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFN------------------------------------------PDPYVKISIQPGKRHIFP 38 (137)
T ss_pred EEEEEEEEeCCCC-CccCCC------------------------------------------CCceEEEEEECCCccccc
Confidence 3679999999998 555554 99999999954 1
Q ss_pred ------eeeeeccccCCCCCeE-eeEEEEEecCCCceEEEEEEEcCCCC----CeeeEEEeccccccccC---ceeEEEE
Q 006854 92 ------TVARTRVLKNSQEPVW-NEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIATG---ELISRWY 157 (628)
Q Consensus 92 ------~~~kT~v~~~~~~P~w-ne~f~~~~~~~~~~l~i~v~d~d~~~----~~~iG~~~i~l~~l~~~---~~~~~w~ 157 (628)
...+|++++++.||+| ||+|.|.+.. ...|.|+|||++..+ +++||.+.+++.++..+ .....|+
T Consensus 39 ~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~ 117 (137)
T cd08691 39 ALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSY 117 (137)
T ss_pred ccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEE
Confidence 2579999999999999 9999999864 568999999976532 68999999999999754 3467899
Q ss_pred EccCCCCCCCCCCceEEEEE
Q 006854 158 DIIAPSGSPPKPGASIQLEL 177 (628)
Q Consensus 158 ~L~~~~~~~~~~~g~i~l~l 177 (628)
+|. ..+......|+|.|.+
T Consensus 118 ~l~-k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 118 TLG-RRTPTDHVSGQLTFRF 136 (137)
T ss_pred ECC-cCCCCCcEEEEEEEEe
Confidence 994 4445566789998876
No 106
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.45 E-value=4.3e-13 Score=123.28 Aligned_cols=94 Identities=26% Similarity=0.355 Sum_probs=79.1
Q ss_pred eeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (628)
Q Consensus 11 ~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~ 90 (628)
.....-|+|.|+|++|++|+. +..+. +||||+|.+++
T Consensus 22 ~~~~~~~~L~V~V~~A~~L~~-d~~g~------------------------------------------~DPYVkV~~~~ 58 (127)
T cd04032 22 PTRRGLATLTVTVLRATGLWG-DYFTS------------------------------------------TDGYVKVFFGG 58 (127)
T ss_pred cCcCCcEEEEEEEEECCCCCc-CcCCC------------------------------------------CCeEEEEEECC
Confidence 345566899999999999973 33332 89999999987
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecC--CCceEEEEEEEcCCCC-CeeeEEEeccccccc
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~--~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~ 148 (628)
. +.||++++++.||+|||+|.|.... ....|+|+|||++.++ +++||.+.++|....
T Consensus 59 ~-~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 59 Q-EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred c-cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 6 5799999999999999999997433 3678999999999996 999999999998655
No 107
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.42 E-value=4.4e-13 Score=165.42 Aligned_cols=124 Identities=22% Similarity=0.447 Sum_probs=105.4
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (628)
Q Consensus 10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~ 89 (628)
..++.+.|.|.|+|++|+||. +.++ ++||||++.++
T Consensus 1973 ~~~~~~~G~L~V~V~~a~nl~--~~~~------------------------------------------~sdPyv~l~~g 2008 (2102)
T PLN03200 1973 SLLQCLPGSLTVTIKRGNNLK--QSMG------------------------------------------NTNAFCKLTLG 2008 (2102)
T ss_pred HHHhhCCcceEEEEeeccccc--cccC------------------------------------------CCCCeEEEEEC
Confidence 346678999999999999997 2222 39999999999
Q ss_pred CeeeeeeccccCCCCCeEeeEEEEEecCCC--ceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCC
Q 006854 90 QATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (628)
Q Consensus 90 ~~~~~kT~v~~~~~~P~wne~f~~~~~~~~--~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~ 167 (628)
+..+.||++++++.||+|||+|+|.+..+. ..|.|+|||+|.|+++.+|.+.|++.++..+....+||+|. ++++
T Consensus 2009 ~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~-~~~~-- 2085 (2102)
T PLN03200 2009 NGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLN-PESN-- 2085 (2102)
T ss_pred CCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecC-cccc--
Confidence 765569999999999999999998877764 67999999999999779999999999999999999999995 3332
Q ss_pred CCCce---EEEEEEEee
Q 006854 168 KPGAS---IQLELKFTP 181 (628)
Q Consensus 168 ~~~g~---i~l~l~y~p 181 (628)
..|+ |++++.|.+
T Consensus 2086 -k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2086 -KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -cCCCcceEEEEEEecC
Confidence 2366 999998875
No 108
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.39 E-value=2.1e-12 Score=117.32 Aligned_cols=80 Identities=25% Similarity=0.371 Sum_probs=70.5
Q ss_pred CCcEEEEEECCee------eeeeccccCCCCCeEeeEEEEEecC-CCceEEEEEEEcCC----CC-CeeeEEEecccccc
Q 006854 80 SDPYVTVVVPQAT------VARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDV----FG-AQIIGTAAIPAHTI 147 (628)
Q Consensus 80 ~dpyv~v~l~~~~------~~kT~v~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~d~----~~-~~~iG~~~i~l~~l 147 (628)
+||||++.+.+.. ..+|++++++.||+|||+|.|.+.. ....|.|+|||++. ++ +++||.+.+++.++
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l 100 (120)
T cd04048 21 SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100 (120)
T ss_pred CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH
Confidence 9999999997643 5799999999999999999998653 35679999999997 66 89999999999999
Q ss_pred ccCceeEEEEEc
Q 006854 148 ATGELISRWYDI 159 (628)
Q Consensus 148 ~~~~~~~~w~~L 159 (628)
..++....|++|
T Consensus 101 ~~~~~~~~~~~l 112 (120)
T cd04048 101 VSSPGQKLTLPL 112 (120)
T ss_pred hcCCCcEEEEEc
Confidence 988888889999
No 109
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.39 E-value=7.3e-13 Score=145.93 Aligned_cols=133 Identities=25% Similarity=0.352 Sum_probs=117.8
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (628)
..|.|+|.+|+|||+.+..+. .||||.|.++++.+.||
T Consensus 5 ~sl~vki~E~knL~~~~~~g~------------------------------------------~D~yC~v~lD~E~v~RT 42 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGM------------------------------------------RDCYCTVNLDQEEVCRT 42 (800)
T ss_pred cceeEEEeecccCCCCCCCCC------------------------------------------cCcceEEeecchhhhhh
Confidence 468999999999998876665 99999999999999999
Q ss_pred ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 006854 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (628)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l 175 (628)
.++.+++.|.|.|+|.|.++.....|.|.|||.| ++ |+.||.+.|.-++|..-...+.||.| .+-.......|+|+|
T Consensus 43 ~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L-~~VD~dsEVQG~v~l 120 (800)
T KOG2059|consen 43 ATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSL-QPVDPDSEVQGKVHL 120 (800)
T ss_pred hhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceec-cccCCChhhceeEEE
Confidence 9999999999999999999999999999999999 66 99999999999999988888999999 565556678899999
Q ss_pred EEEEeecCCCCccccccC
Q 006854 176 ELKFTPCDKNPLYRQGIA 193 (628)
Q Consensus 176 ~l~y~p~~~~~~~~~gv~ 193 (628)
++.+.+........+.+.
T Consensus 121 ~l~~~e~~~~~~~~c~~L 138 (800)
T KOG2059|consen 121 ELALTEAIQSSGLVCHVL 138 (800)
T ss_pred EEEeccccCCCcchhhhh
Confidence 999999877665555433
No 110
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.39 E-value=1.6e-12 Score=118.97 Aligned_cols=117 Identities=24% Similarity=0.338 Sum_probs=88.7
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCee-eeee
Q 006854 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VART 96 (628)
Q Consensus 18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~-~~kT 96 (628)
.|+|.|++|++|+.++..+. +||||++.+++.. ..||
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~~kT 38 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGK------------------------------------------SDPYLKIKLGKKKINDRD 38 (124)
T ss_pred CEEEEEEECcCCCCCCCCCC------------------------------------------CCcEEEEEECCeecccee
Confidence 37899999999998776554 9999999998743 3588
Q ss_pred ccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEE
Q 006854 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (628)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~ 174 (628)
++++++.||.|||+|.|.+..+ ...|.|+|||.+.++ +++||.+.+++.+... ..+|..+..+...+ ..|.++
T Consensus 39 ~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~---~~~~~~~~~~~~~~--~~~~~~ 113 (124)
T cd04037 39 NYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF---SKHRATCGLPPTYE--ESGPNQ 113 (124)
T ss_pred eEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc---chHHHhccCCCccc--ccCcee
Confidence 8899999999999999987654 567999999999986 9999999999986653 23444443232221 345565
Q ss_pred EEEEEee
Q 006854 175 LELKFTP 181 (628)
Q Consensus 175 l~l~y~p 181 (628)
.+-++.|
T Consensus 114 ~~~~~~~ 120 (124)
T cd04037 114 WRDSLKP 120 (124)
T ss_pred cCcccCc
Confidence 5555444
No 111
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.38 E-value=3.1e-12 Score=116.57 Aligned_cols=102 Identities=28% Similarity=0.428 Sum_probs=83.0
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..+.|.|+|++|++|+..+..+. +||||++.+.+
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~ 50 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGL------------------------------------------SDPYVKLNLLPGASK 50 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCceEEEEEecCCCC
Confidence 34689999999999997665443 89999999843
Q ss_pred eeeeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEE
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD 158 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 158 (628)
..+.+|++++++.||.|||+|.|. +... ...+.|+|||.+.+++++||.+.++++++..++..+-|+.
T Consensus 51 ~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 51 ATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 345799999999999999999996 3322 4579999999988788999999999999997765555543
No 112
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.36 E-value=8.9e-12 Score=112.31 Aligned_cols=79 Identities=29% Similarity=0.471 Sum_probs=61.4
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEc-------CCCC-CeeeEEEecccc--
Q 006854 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-------DVFG-AQIIGTAAIPAH-- 145 (628)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~-------d~~~-~~~iG~~~i~l~-- 145 (628)
+||||++.+.+ ..++||++++++.||+|||+|.|.+.. ...|.+.|||+ |..+ |+++|.+.+.|+
T Consensus 15 sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 15 ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEECHH
Confidence 89999999865 346899999999999999999999975 77899999998 4556 899988888764
Q ss_pred ccccCceeEEEEEc
Q 006854 146 TIATGELISRWYDI 159 (628)
Q Consensus 146 ~l~~~~~~~~w~~L 159 (628)
.+........-+.|
T Consensus 94 ~~~~~~~~~~~~~~ 107 (118)
T cd08686 94 SLQTKKWQEKVISM 107 (118)
T ss_pred HhccCCeeEEEEEe
Confidence 33333333344555
No 113
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.34 E-value=3.6e-12 Score=142.56 Aligned_cols=154 Identities=18% Similarity=0.126 Sum_probs=115.7
Q ss_pred CCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEE
Q 006854 226 ILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (628)
Q Consensus 226 ~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILv 305 (628)
...++.+.+||++..+.+...+.++|.+|+++|+|++-.|-| . ..+.++|+.||+|||+|+||+
T Consensus 302 ~~~~qi~~sgP~~~~~~~~~~~~~~I~~A~~~I~I~tpYfip--------~--------~~i~~aL~~Aa~rGV~Vril~ 365 (483)
T PRK01642 302 GHTVQVIASGPGDPEETIHQFLLTAIYSARERLWITTPYFVP--------D--------EDLLAALKTAALRGVDVRIII 365 (483)
T ss_pred CceEEEEeCCCCChhhHHHHHHHHHHHHhccEEEEEcCCcCC--------C--------HHHHHHHHHHHHcCCEEEEEe
Confidence 346778888999887888999999999999999999632322 1 579999999999999999997
Q ss_pred ecCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceE
Q 006854 306 WDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT 385 (628)
Q Consensus 306 wD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~v 385 (628)
+........ ........+.|.++||++.. +... ..|.|++|||++ +
T Consensus 366 -p~~~d~~~~--------~~~~~~~~~~L~~~Gv~I~~---y~~~--------------~~HaK~~ivD~~--------~ 411 (483)
T PRK01642 366 -PSKNDSLLV--------FWASRAFFTELLEAGVKIYR---YEGG--------------LLHTKSVLVDDE--------L 411 (483)
T ss_pred -CCCCCcHHH--------HHHHHHHHHHHHHcCCEEEE---eCCC--------------ceEeEEEEECCC--------E
Confidence 655332211 01134456667789999873 2221 249999999998 9
Q ss_pred EEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhcc
Q 006854 386 AFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK 461 (628)
Q Consensus 386 afvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~ 461 (628)
+++|+.|+....|.. =+++.+.+.+| .++++.+.|.++|..+..
T Consensus 412 ~~vGS~N~d~rS~~~--------------------------------N~E~~~~i~d~~~~~~l~~~f~~d~~~s~~ 456 (483)
T PRK01642 412 ALVGTVNLDMRSFWL--------------------------------NFEITLVIDDTGFAADLAAMQEDYFARSRE 456 (483)
T ss_pred EEeeCCcCCHhHHhh--------------------------------hhcceEEEECHHHHHHHHHHHHHHHHhCeE
Confidence 999999997733311 13778888887 689999999999987654
No 114
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.21 E-value=9.5e-11 Score=106.56 Aligned_cols=124 Identities=20% Similarity=0.372 Sum_probs=86.4
Q ss_pred HHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCcc-CcccccCCCcccC
Q 006854 247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH-DKLGVKTPGVMAT 325 (628)
Q Consensus 247 l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~-~~~~~~~~~~~~~ 325 (628)
|.++|++|+++|+|+.+.|.. ..+.++|..++++||+|+||+ +..... ... ...
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~-----------------~~i~~~l~~~~~~gv~v~ii~-~~~~~~~~~~-------~~~ 55 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITD-----------------PDIIKALLDAAKRGVKVRIIV-DSNQDDSEAI-------NLA 55 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-S-----------------CHHHHHHHHHHHTT-EEEEEE-ECGGGHHCCC-------SHH
T ss_pred CHHHHhccCCEEEEEEEecCc-----------------HHHHHHHHHHHHCCCeEEEEE-CCCccccchh-------hhH
Confidence 578999999999999875521 478999999999999999997 654210 000 000
Q ss_pred ChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCC
Q 006854 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 405 (628)
Q Consensus 326 ~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~ 405 (628)
....+.+.+...|+++. .+.|.|++|||++ ++++|+.|++...|.
T Consensus 56 ~~~~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~~------ 100 (126)
T PF13091_consen 56 SLKELRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSFR------ 100 (126)
T ss_dssp HHHHHHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCSC------
T ss_pred HHHHHHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchhc------
Confidence 12334455577888865 1349999999998 999999999996552
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHH-HHHHHHHHHHHH
Q 006854 406 FRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRW 456 (628)
Q Consensus 406 ~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpa-v~~l~~~F~~rW 456 (628)
..++..+.+++|. ++++.+.|.+.|
T Consensus 101 --------------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 --------------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp --------------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred --------------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2369999999995 999999998889
No 115
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.21 E-value=6.2e-11 Score=129.57 Aligned_cols=152 Identities=13% Similarity=0.079 Sum_probs=108.0
Q ss_pred CCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEe
Q 006854 227 LPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVW 306 (628)
Q Consensus 227 ~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvw 306 (628)
..++.+.+||+.....+...+.++|.+|+++|+|++=-| . +. ..+.++|+.||+|||+|+||+
T Consensus 191 ~~~~~v~~~p~~~~~~i~~~~~~~i~~A~~~I~I~tpYf------~--p~--------~~l~~aL~~Aa~RGV~V~ii~- 253 (411)
T PRK11263 191 AQALLVWRDNEEHRDDIERHYLKALRQARREVIIANAYF------F--PG--------YRLLRALRNAARRGVRVRLIL- 253 (411)
T ss_pred eEEEEEECCCcchHHHHHHHHHHHHHHhceEEEEEecCc------C--CC--------HHHHHHHHHHHHCCCEEEEEe-
Confidence 345555566665556788899999999999999986222 2 11 579999999999999999997
Q ss_pred cCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEE
Q 006854 307 DDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITA 386 (628)
Q Consensus 307 D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~va 386 (628)
+..++... +........+.|.++||++.. +... ..|.|++|||++ ++
T Consensus 254 ~~~~d~~~--------~~~a~~~~~~~Ll~~Gv~I~~---y~~~--------------~lHaK~~viD~~--------~~ 300 (411)
T PRK11263 254 QGEPDMPI--------VRVGARLLYNYLLKGGVQIYE---YCRR--------------PLHGKVALMDDH--------WA 300 (411)
T ss_pred CCCCCcHH--------HHHHHHHHHHHHHHCCCEEEE---ecCC--------------CceeEEEEECCC--------EE
Confidence 66544321 111123456678889999863 2211 249999999998 99
Q ss_pred EEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhc
Q 006854 387 FIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (628)
Q Consensus 387 fvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~ 460 (628)
++|+.|+....+ .. =..+.+.|.+| .+++|...|.+.+...+
T Consensus 301 ~vGS~Nld~rS~-~l-------------------------------N~E~~~~i~d~~~a~~l~~~~~~~~~~~s 343 (411)
T PRK11263 301 TVGSSNLDPLSL-SL-------------------------------NLEANLIIRDRAFNQTLRDNLNGLIAADC 343 (411)
T ss_pred EEeCCcCCHHHh-hh-------------------------------hhhcCEEEeCHHHHHHHHHHHHHHHHhhC
Confidence 999999987322 10 02566777887 56888899999996333
No 116
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.20 E-value=7.7e-11 Score=105.15 Aligned_cols=69 Identities=33% Similarity=0.556 Sum_probs=59.3
Q ss_pred CCcEEEEEECCe-----eeeeeccccCCCCCeEeeEEEEEecC-----CCceEEEEEEEcCCCC-CeeeEEEeccccccc
Q 006854 80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (628)
Q Consensus 80 ~dpyv~v~l~~~-----~~~kT~v~~~~~~P~wne~f~~~~~~-----~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~ 148 (628)
+||||++++.+. ..++|++++++.||.|| +|.|++.. ....|.|+|||++.++ +++||.+.+++.++.
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence 999999998542 35899999999999999 78887532 2568999999999997 899999999999998
Q ss_pred c
Q 006854 149 T 149 (628)
Q Consensus 149 ~ 149 (628)
.
T Consensus 100 ~ 100 (110)
T cd04047 100 K 100 (110)
T ss_pred c
Confidence 3
No 117
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.16 E-value=1.2e-10 Score=97.60 Aligned_cols=81 Identities=44% Similarity=0.762 Sum_probs=69.6
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe--eeeee
Q 006854 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--TVART 96 (628)
Q Consensus 19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~--~~~kT 96 (628)
|.|+|++|++|+..+..+. .||||++.+... ...+|
T Consensus 1 L~v~I~~a~~L~~~~~~~~------------------------------------------~~~yv~v~~~~~~~~~~~T 38 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK------------------------------------------PDPYVRVSVNGSESTKYKT 38 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS------------------------------------------BEEEEEEEEETTTCEEEEE
T ss_pred CEEEEEEEECCCCcccCCc------------------------------------------ccccceeecceeeeeeeee
Confidence 7899999999997664443 899999999873 33899
Q ss_pred ccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEe
Q 006854 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAA 141 (628)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~ 141 (628)
++++++.+|.|||+|.|.+..+ ...|.|+|||.+.++ +++||++.
T Consensus 39 ~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 39 KVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp CCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 9999999999999999995554 556999999999999 99999873
No 118
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.11 E-value=4.6e-10 Score=95.42 Aligned_cols=80 Identities=34% Similarity=0.646 Sum_probs=71.1
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecC-CCceEEEEEEEcCCCC-CeeeEEEeccccccc-cCceeEEE
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRW 156 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~-~~~~~~~w 156 (628)
.+|||++.+.+....+|+++..+.+|.|||.|.|.+.. ....|.|+|++.+... +.+||.+.+++.++. .......|
T Consensus 20 ~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~ 99 (102)
T cd00030 20 SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW 99 (102)
T ss_pred CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcce
Confidence 89999999988556799999999999999999999988 6778999999998887 899999999999998 66667778
Q ss_pred EEc
Q 006854 157 YDI 159 (628)
Q Consensus 157 ~~L 159 (628)
++|
T Consensus 100 ~~l 102 (102)
T cd00030 100 LPL 102 (102)
T ss_pred ecC
Confidence 765
No 119
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.4e-10 Score=127.11 Aligned_cols=115 Identities=30% Similarity=0.515 Sum_probs=93.4
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-
Q 006854 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (628)
Q Consensus 12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~- 90 (628)
....+|.|+|.|++|++|+.++..+. +||||++.+..
T Consensus 293 Y~p~~g~ltv~v~kar~L~~~~~~~~------------------------------------------~d~~Vk~~l~~~ 330 (421)
T KOG1028|consen 293 YLPTAGRLTVVVIKARNLKSMDVGGL------------------------------------------SDPYVKVTLLDG 330 (421)
T ss_pred eecCCCeEEEEEEEecCCCcccCCCC------------------------------------------CCccEEEEEecC
Confidence 34457999999999999999887765 89999999854
Q ss_pred ---eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCC
Q 006854 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (628)
Q Consensus 91 ---~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 163 (628)
.++.||.+++++.||+|||+|.|.++.. ...|.|+|||+|.++ +++||.+.+.... .+....+|..+....
T Consensus 331 ~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p 408 (421)
T KOG1028|consen 331 DKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSP 408 (421)
T ss_pred CceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCc
Confidence 4567999999999999999999988875 456899999999999 7899998887764 455567788877666
Q ss_pred CCCCCCC
Q 006854 164 GSPPKPG 170 (628)
Q Consensus 164 ~~~~~~~ 170 (628)
+++...+
T Consensus 409 ~~pv~~w 415 (421)
T KOG1028|consen 409 RKPVAQW 415 (421)
T ss_pred cCceeee
Confidence 5554433
No 120
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.05 E-value=1.1e-09 Score=93.71 Aligned_cols=73 Identities=42% Similarity=0.754 Sum_probs=65.3
Q ss_pred CCcEEEEEECCe--eeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCce
Q 006854 80 SDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (628)
Q Consensus 80 ~dpyv~v~l~~~--~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~ 152 (628)
.+|||++.+... ...+|+++.++.+|.|||.|.|.+... ...|.|+||+.+... +.++|.+.+++.++..+..
T Consensus 21 ~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 21 SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 899999999875 568999999999999999999999887 788999999998877 8999999999998876543
No 121
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.03 E-value=6.6e-10 Score=119.82 Aligned_cols=167 Identities=27% Similarity=0.473 Sum_probs=126.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (628)
+.|.|-|+|..||+||.||..+. ..|.||++.+.+.. .
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd-----------------------------------------~tdafveik~~n~t-~ 38 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD-----------------------------------------LTDAFVEIKFANTT-F 38 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc-----------------------------------------cchheeEEEecccc-e
Confidence 46889999999999999987765 38999999999876 7
Q ss_pred eeccccCCCCCeEe-eEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecccccccc----------CceeEEEEEc
Q 006854 95 RTRVLKNSQEPVWN-EHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT----------GELISRWYDI 159 (628)
Q Consensus 95 kT~v~~~~~~P~wn-e~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~----------~~~~~~w~~L 159 (628)
||.|-.+++||.|| +-|.|.+... .++|.|++.|+|..+ ++.||.+.|.+..+.. |..+.+|||+
T Consensus 39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi 118 (1169)
T KOG1031|consen 39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI 118 (1169)
T ss_pred ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence 99999999999999 5589998875 578999999999999 8999999998876652 3467899999
Q ss_pred cCCCCCCCCCCceEEEEEE---EeecCCCCccccccCCCCCCCCccCccccCCCCCceeEeecccccCCCCCceecCCCC
Q 006854 160 IAPSGSPPKPGASIQLELK---FTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK 236 (628)
Q Consensus 160 ~~~~~~~~~~~g~i~l~l~---y~p~~~~~~~~~gv~~~p~~~~~~~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~ 236 (628)
++.-- ...|+|.+-+. |.....-|+.++|+.- .+.. ..|. -|. +....||.++.++-++|
T Consensus 119 fdtih---girgeinvivkvdlfndlnkf~qsscgvkf----fctt--sip~-------~yr-a~iihgfveelvvnddp 181 (1169)
T KOG1031|consen 119 FDTIH---GIRGEINVIVKVDLFNDLNKFPQSSCGVKF----FCTT--SIPF-------CYR-AQIIHGFVEELVVNDDP 181 (1169)
T ss_pred ceecc---cccceeEEEEEEeehhhhhhccccccccee----eecc--cCcc-------cee-ehhhhhhhHHhccCCCc
Confidence 76532 24588888776 5555555565555332 1110 0111 111 23456899999999999
Q ss_pred ccCC
Q 006854 237 LYKP 240 (628)
Q Consensus 237 ~y~~ 240 (628)
+|.|
T Consensus 182 eyqw 185 (1169)
T KOG1031|consen 182 EYQW 185 (1169)
T ss_pred chhh
Confidence 9988
No 122
>PHA02820 phospholipase-D-like protein; Provisional
Probab=98.99 E-value=3.6e-09 Score=116.30 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=99.9
Q ss_pred HHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHH-HhhcCCEEEEEEecCCCccCcccccCCCc
Q 006854 244 WEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKY-KSEEGVRVLLLVWDDKTSHDKLGVKTPGV 322 (628)
Q Consensus 244 f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~-aA~rGV~VrILvwD~~gs~~~~~~~~~~~ 322 (628)
..+++.+|.+|+++|+|++=-|-|+.+...++.. -...|.++|++ |++|||+||||+ -........
T Consensus 220 ~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~-----yw~~i~~AL~~AA~~RGV~VriLv-p~~~d~~~~------- 286 (424)
T PHA02820 220 LTALLSCIRNASKFVYVSVMNFIPIIYSKAGKIL-----FWPYIEDELRRAAIDRKVSVKLLI-SCWQRSSFI------- 286 (424)
T ss_pred HHHHHHHHHHHhhEEEEEEccccceeeccCCccc-----chHHHHHHHHHHHHhCCCEEEEEE-eccCCCCcc-------
Confidence 5889999999999999998777776332222211 13579999996 567999999998 333222110
Q ss_pred ccCChHHHHhhhccCCceEE--eccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCC
Q 006854 323 MATHDEETKKFFKHSSVNCV--LAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (628)
Q Consensus 323 ~~~~~~~~~~~l~~~gv~~~--~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~ 400 (628)
+ .......+.|..+|+++. .. .+|.... ......-+|.|++|||+ .|++|..|+...+|..
T Consensus 287 ~-~a~~~~l~~L~~~gv~I~Vk~y-~~p~~~~------~~~~~~f~HaK~~vvD~---------~a~IGTsN~D~rsf~~ 349 (424)
T PHA02820 287 M-RNFLRSIAMLKSKNINIEVKLF-IVPDADP------PIPYSRVNHAKYMVTDK---------TAYIGTSNWTGNYFTD 349 (424)
T ss_pred H-HHHHHHHHHHhccCceEEEEEE-EcCcccc------cCCcceeeeeeEEEEcc---------cEEEECCcCCHHHHhc
Confidence 0 001223444567888863 11 1221100 00112356999999995 8999999999965532
Q ss_pred CCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeC----HHHHHHHHHHHHHHhhh
Q 006854 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG----PAAYDVLINFEQRWRKA 459 (628)
Q Consensus 401 ~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~G----pav~~l~~~F~~rW~~~ 459 (628)
. .-+.+.+.. +.+++|+..|.++|+..
T Consensus 350 n--------------------------------~ev~~~i~~~~~~~~~~~l~~~F~~D~~s~ 380 (424)
T PHA02820 350 T--------------------------------CGVSINITPDDGLGLRQQLEDIFIRDWNSK 380 (424)
T ss_pred c--------------------------------CcEEEEEecCCcHHHHHHHHHHHHHhcCCC
Confidence 0 245666654 59999999999999864
No 123
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.98 E-value=2.3e-09 Score=99.03 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=62.9
Q ss_pred CCcEEEEEECC--eeeeeeccccCCCC--CeEeeEEEEEecCC------------------------CceEEEEEEEcCC
Q 006854 80 SDPYVTVVVPQ--ATVARTRVLKNSQE--PVWNEHFNIPLAHP------------------------LSNLEIQVKDDDV 131 (628)
Q Consensus 80 ~dpyv~v~l~~--~~~~kT~v~~~~~~--P~wne~f~~~~~~~------------------------~~~l~i~v~d~d~ 131 (628)
+||||++.+.+ ..+++|.|..++.| |.||+.|.|++..+ ...|.++|||.|.
T Consensus 25 sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~ 104 (133)
T cd08374 25 SDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK 104 (133)
T ss_pred cCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc
Confidence 99999999987 56689999999999 99999999986661 2458999999999
Q ss_pred CC-CeeeEEEeccccccccCc
Q 006854 132 FG-AQIIGTAAIPAHTIATGE 151 (628)
Q Consensus 132 ~~-~~~iG~~~i~l~~l~~~~ 151 (628)
++ +++||.+.++|..+..+.
T Consensus 105 ~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 105 FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cCCCCcceEEEEEhhhccccc
Confidence 98 999999999999887654
No 124
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=8.2e-10 Score=120.32 Aligned_cols=124 Identities=25% Similarity=0.476 Sum_probs=101.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (628)
....++++|+.|++|...|..|. +||||.+.++..+ .
T Consensus 293 wsakitltvlcaqgl~akdktg~------------------------------------------sdpyvt~qv~ktk-r 329 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGK------------------------------------------SDPYVTAQVGKTK-R 329 (1283)
T ss_pred cceeeEEeeeecccceecccCCC------------------------------------------CCCcEEEeecccc-h
Confidence 34568999999999998877665 9999999998866 5
Q ss_pred eeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCC------------CCeeeEEEeccccccccCceeEEEEEccCC
Q 006854 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAP 162 (628)
Q Consensus 95 kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~------------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 162 (628)
||+++...+||+|||.|.|........|+++|||.|.. +|+|+|+..|-+..+. | +.+.||.|. .
T Consensus 330 rtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynle-k 406 (1283)
T KOG1011|consen 330 RTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNLE-K 406 (1283)
T ss_pred hhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcchh-h
Confidence 99999999999999999999998889999999998733 3899999999888776 3 467899994 4
Q ss_pred CCCCCCCCceEEEEEEEeecCC
Q 006854 163 SGSPPKPGASIQLELKFTPCDK 184 (628)
Q Consensus 163 ~~~~~~~~g~i~l~l~y~p~~~ 184 (628)
.......+|-|+|.|+---...
T Consensus 407 rtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 407 RTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred ccchhhccceEEEEEEEEEcCc
Confidence 3344556788888887555443
No 125
>PLN02223 phosphoinositide phospholipase C
Probab=98.96 E-value=7.1e-09 Score=114.58 Aligned_cols=96 Identities=23% Similarity=0.432 Sum_probs=78.6
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCC-CeeeEEEeccccccccCcee
Q 006854 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (628)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~ 153 (628)
.||||+|.+.+ ....+|++..++.||.|||+|.|.+..+. .-|.|+|+|.|... ++++|+..+|+..|..|-
T Consensus 435 ~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy-- 512 (537)
T PLN02223 435 PDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI-- 512 (537)
T ss_pred CCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc--
Confidence 89999999854 33457888888999999999999987765 45799999999877 899999999999999885
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 006854 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (628)
Q Consensus 154 ~~w~~L~~~~~~~~~~~g~i~l~l~y 179 (628)
++++|.+..|.+... .+|.+.+.|
T Consensus 513 -R~VpL~~~~g~~l~~-~~Ll~~f~~ 536 (537)
T PLN02223 513 -RAVPLYDERGKACSS-TMLLTRFKW 536 (537)
T ss_pred -eeEeccCCCcCCCCC-ceEEEEEEe
Confidence 678998888775432 466666654
No 126
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.96 E-value=1.9e-09 Score=125.27 Aligned_cols=126 Identities=25% Similarity=0.343 Sum_probs=106.2
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeee
Q 006854 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (628)
Q Consensus 14 ~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~ 93 (628)
--.|.|+|.+..|.||++.|.++. +||||++.+..++.
T Consensus 1037 ~nsG~l~I~~~~~~nl~~~d~ng~------------------------------------------sDpfv~~~ln~k~v 1074 (1227)
T COG5038 1037 ENSGYLTIMLRSGENLPSSDENGY------------------------------------------SDPFVKLFLNEKSV 1074 (1227)
T ss_pred cccCcEEEEEeccCCCcccccCCC------------------------------------------CCceEEEEecceec
Confidence 347899999999999999998887 99999999999889
Q ss_pred eeeccccCCCCCeEeeEEEEEecC-CCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCc
Q 006854 94 ARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (628)
Q Consensus 94 ~kT~v~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g 171 (628)
++|+++++++||+|||+|.+++.. ....+++.|+|+|.-. ++.||++.++|+.+..+.....-.+|.+. . .....|
T Consensus 1075 yktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk-~-~~~~~g 1152 (1227)
T COG5038 1075 YKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGK-T-FIVLDG 1152 (1227)
T ss_pred ccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCc-c-eEeccc
Confidence 999999999999999999999885 4677899999999988 89999999999999988777767777322 2 223456
Q ss_pred eEEEEEEEeecC
Q 006854 172 SIQLELKFTPCD 183 (628)
Q Consensus 172 ~i~l~l~y~p~~ 183 (628)
.++....|.+.-
T Consensus 1153 ~~~~~~~~r~~~ 1164 (1227)
T COG5038 1153 TLHPGFNFRSKY 1164 (1227)
T ss_pred Eeecceecchhh
Confidence 777777666643
No 127
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.94 E-value=4.9e-09 Score=122.00 Aligned_cols=136 Identities=26% Similarity=0.417 Sum_probs=108.2
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeee
Q 006854 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (628)
Q Consensus 14 ~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~ 93 (628)
.--|.|+|+|.+|++|...+..-. ++.|||+++.+.....
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~----------------------------------------~~vDpyit~~~~~r~~ 472 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTIN----------------------------------------GTVDPYITVTFSDRVI 472 (1227)
T ss_pred CeeEEEEEEEeeccCccccccccc----------------------------------------CCCCceEEEEeccccC
Confidence 345899999999999986652211 1399999999888677
Q ss_pred eeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeE-EEEEccCCCCCCCCCCc
Q 006854 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS-RWYDIIAPSGSPPKPGA 171 (628)
Q Consensus 94 ~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~-~w~~L~~~~~~~~~~~g 171 (628)
.||++.+++.||+|||+|.+.+....+.|.++|||.+.++ |+++|++.++|..|....... +-+.+. ... +..|
T Consensus 473 gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~---k~vG 548 (1227)
T COG5038 473 GKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNT---KNVG 548 (1227)
T ss_pred CccceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccC---ccce
Confidence 8999999999999999999999999999999999987777 999999999999888554443 344442 222 4569
Q ss_pred eEEEEEEEeecCCCCccccccC
Q 006854 172 SIQLELKFTPCDKNPLYRQGIA 193 (628)
Q Consensus 172 ~i~l~l~y~p~~~~~~~~~gv~ 193 (628)
+|...++|.|...+..-..+..
T Consensus 549 rL~yDl~ffp~~e~k~~~~~s~ 570 (1227)
T COG5038 549 RLTYDLRFFPVIEDKKELKGSV 570 (1227)
T ss_pred EEEEeeeeecccCCcccccccc
Confidence 9999999999876665555444
No 128
>PLN02952 phosphoinositide phospholipase C
Probab=98.89 E-value=1.8e-08 Score=113.62 Aligned_cols=95 Identities=22% Similarity=0.435 Sum_probs=76.5
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCC-CeeeEEEeccccccccCcee
Q 006854 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (628)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~ 153 (628)
.||||+|.+-+ ....+|+++.++.||+|||+|.|++..+. .-|.|.|+|+|..+ ++++|++.+|+..|..|-
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-- 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI-- 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence 69999999854 34469999999999999999999977764 45799999999887 899999999999999885
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEE
Q 006854 154 SRWYDIIAPSGSPPKPGASIQLELK 178 (628)
Q Consensus 154 ~~w~~L~~~~~~~~~~~g~i~l~l~ 178 (628)
+|++|.+..|.+.. ...|.+.+.
T Consensus 575 -R~VpL~~~~G~~l~-~a~Llv~f~ 597 (599)
T PLN02952 575 -RSVPLHDKKGEKLK-NVRLLMRFI 597 (599)
T ss_pred -eeEeCcCCCCCCCC-CEEEEEEEE
Confidence 59999877776442 234444443
No 129
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.79 E-value=4.6e-08 Score=110.11 Aligned_cols=96 Identities=23% Similarity=0.472 Sum_probs=78.4
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCcee
Q 006854 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (628)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~ 153 (628)
.||||+|.+-+ ....+|++..++.||.|||+|.|++.-+ ..-|.|.|+|+|... ++++|+..+|+..|..|-
T Consensus 496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-- 573 (598)
T PLN02230 496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI-- 573 (598)
T ss_pred CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc--
Confidence 79999999843 3346899999999999999999997766 456799999999876 999999999999999884
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 006854 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (628)
Q Consensus 154 ~~w~~L~~~~~~~~~~~g~i~l~l~y 179 (628)
+.++|.+..|.+... .+|.+.+.|
T Consensus 574 -R~V~L~~~~G~~l~~-~~Ll~~f~~ 597 (598)
T PLN02230 574 -HAVPLFNRKGVKYSS-TRLLMRFEF 597 (598)
T ss_pred -ceEeccCCCcCCCCC-CeeEEEEEe
Confidence 568898887775433 467776665
No 130
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.78 E-value=7.8e-07 Score=94.73 Aligned_cols=254 Identities=16% Similarity=0.099 Sum_probs=146.5
Q ss_pred hHHHHHHHHHhccceEEEEEEEEecccc-eeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCC
Q 006854 243 CWEDICHAISEAHHLIYIVGWSVFHKIK-LIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (628)
Q Consensus 243 ~f~~l~~aI~~Ak~sI~i~~w~f~~~~~-l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~ 321 (628)
.+++.++.+++|+++++|..|-+.-... +--++. -... +..+...|..++.+||.|||.. .... ...
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~ds-St~~--G~~vy~~L~~~~~~gIsiriA~-~~p~-~~~------- 140 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDS-STQY--GEQVYNTLLALAKSGVKIRIAQ-SYPS-GGP------- 140 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccCCC-cchH--HHHHHHHHHHhccCCeEEEEEe-ecCC-CCC-------
Confidence 4688899999999999998775432100 000010 0112 2689999999999999999996 3331 110
Q ss_pred cccCChHHHHhhhccCC-ceEEe--ccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCC
Q 006854 322 VMATHDEETKKFFKHSS-VNCVL--APRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRY 398 (628)
Q Consensus 322 ~~~~~~~~~~~~l~~~g-v~~~~--~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~ 398 (628)
++.-...|+..| +++.- .+.++.+ .-.|-|+.|||++ .-|+||+|+...-
T Consensus 141 -----~~~d~~~Le~~Gaa~vr~id~~~l~g~-------------GvlHtKf~vvD~k--------hfylGSaNfDWrS- 193 (456)
T KOG3603|consen 141 -----PNADLQVLESLGLAQVRSIDMNRLTGG-------------GVLHTKFWVVDIK--------HFYLGSANFDWRS- 193 (456)
T ss_pred -----CcccHHHHHhCCCceEEeecccccccC-------------ceEEEEEEEEecc--------eEEEeccccchhh-
Confidence 112234466666 66651 1223221 2349999999998 9999999999822
Q ss_pred CCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeC--HHHHHHHHHHHHHHhhhcccchhhhhhccccccc
Q 006854 399 DTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG--PAAYDVLINFEQRWRKATKLTELTFKFKRVSHWR 476 (628)
Q Consensus 399 d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~G--pav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~ 476 (628)
.+ + --.+.+.++- -.++||...|.+.|..-.... +.+ ..|.
T Consensus 194 lT----------q---------------------vkElGv~v~NCpclakDL~kiFe~yW~lg~~~s-~~p-----~~wp 236 (456)
T KOG3603|consen 194 LT----------Q---------------------VKELGVVVRNCPCLAKDLKKIFERYWYLGNAKS-LIP-----KKWP 236 (456)
T ss_pred cc----------c---------------------eeEeeeEEecChhHHHHHHHHHHHHhcCCCCCc-cCC-----CCCc
Confidence 11 0 0123333322 389999999999998644331 000 0111
Q ss_pred ccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCc
Q 006854 477 DDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDV 556 (628)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~ 556 (628)
.. ++ . ......|..- ..+......++..|-| |..+ .|
T Consensus 237 ~~-------~s----t----------~~N~~~p~~~---~~dg~~~~~y~saSP~-------~~~~-----~g------- 273 (456)
T KOG3603|consen 237 NC-------YS----T----------HYNKPLPMKI---AVDGTPATPYISASPP-------PLNP-----SG------- 273 (456)
T ss_pred cc-------cc----c----------cccccCccee---ecCCCCcceEEccCCC-------CCCC-----CC-------
Confidence 00 00 0 0000000000 1112233444444421 0111 11
Q ss_pred chhhHHHHHHHHHHHhccceEEEe-ecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEE
Q 006854 557 VIDKSIQTAYIQAIRSAQHFIYIE-NQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARR 626 (628)
Q Consensus 557 ~~e~~I~~ay~~aI~~Ak~~IyIe-nqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~ 626 (628)
..-=.+|+++.|..|++||||. .+||=+..+ .+. ++.- +|=++|.+|+-+|++||..|-
T Consensus 274 --rt~DL~ail~~i~~A~~fv~isVMdY~Ps~~y------~k~--~~fw-~iDdaiR~aa~RgV~vR~lvs 333 (456)
T KOG3603|consen 274 --RTWDLEAILNTIDEAQKFVYISVMDYFPSTIY------SKN--HRFW-EIDDAIRRAAVRGVKVRLLVS 333 (456)
T ss_pred --CchhHHHHHHHHHHHhhheeeeehhccchhee------ecC--cchh-hhhHHHHHHhhcceEEEEEEe
Confidence 2334689999999999999996 677755443 222 3333 889999999999999999874
No 131
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.71 E-value=1.5e-07 Score=105.99 Aligned_cols=96 Identities=24% Similarity=0.500 Sum_probs=78.3
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCcee
Q 006854 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (628)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~ 153 (628)
.||||+|.+.+ ....+|+++.++.||+|||+|.|.+..+ ..-|.|.|+|.|... ++++|+..+|+..|..|-
T Consensus 479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy-- 556 (581)
T PLN02222 479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI-- 556 (581)
T ss_pred CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc--
Confidence 79999999853 3456999999999999999999997766 456799999998876 899999999999999884
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 006854 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (628)
Q Consensus 154 ~~w~~L~~~~~~~~~~~g~i~l~l~y 179 (628)
+.++|.+..|.+... ..|.+.+.|
T Consensus 557 -R~V~L~~~~g~~l~~-a~Lfv~~~~ 580 (581)
T PLN02222 557 -RAFPLHSRKGEKYKS-VKLLVKVEF 580 (581)
T ss_pred -ceEEccCCCcCCCCC-eeEEEEEEe
Confidence 568898887775433 466666654
No 132
>PLN02228 Phosphoinositide phospholipase C
Probab=98.69 E-value=2.1e-07 Score=104.46 Aligned_cols=99 Identities=22% Similarity=0.365 Sum_probs=81.9
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeE-eeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCce
Q 006854 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVW-NEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (628)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~~~~P~w-ne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~ 152 (628)
.||||+|.+.+ ....+|+++.++.||.| ||+|.|++..+ ..-|.|.|+|.|..+ ++++|+..+|+..|..|-
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY- 536 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV- 536 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe-
Confidence 79999999854 34469999999999999 99999997776 456799999999776 899999999999999874
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEeec
Q 006854 153 ISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (628)
Q Consensus 153 ~~~w~~L~~~~~~~~~~~g~i~l~l~y~p~ 182 (628)
+.++|.+..|.... ..+|.+.+.+.+.
T Consensus 537 --R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 537 --RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred --eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 56889888887543 3688888887764
No 133
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.69 E-value=8e-08 Score=84.32 Aligned_cols=66 Identities=29% Similarity=0.402 Sum_probs=58.1
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEecccccccc
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT 149 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~ 149 (628)
+||||.|.+++..+.||++ +.||.|||+|.|++. ....+++.|||+..-..-.||..-+.+++|..
T Consensus 23 ~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 23 PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCCeecceeeehhhHHHHHH
Confidence 8999999999987889988 489999999999995 47789999999876667799999999988773
No 134
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.69 E-value=7.6e-08 Score=106.32 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=103.7
Q ss_pred eecCCCCcc--CCcch--HHHHHHHHHhccceEEEEE-EEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEE
Q 006854 230 IPLDGGKLY--KPGTC--WEDICHAISEAHHLIYIVG-WSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLL 304 (628)
Q Consensus 230 ~~l~~g~~y--~~~~~--f~~l~~aI~~Ak~sI~i~~-w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrIL 304 (628)
+.+.+||.+ ....+ -..++.+|.+|+++|+|++ |.+ +. ..+.++|+.++++||+|+||
T Consensus 254 ~~~~~~P~~~~~~~~~~~~~~~~~~i~~A~~~i~i~~pYf~---------~~--------~~~~~al~~a~~~Gv~V~ii 316 (438)
T COG1502 254 QVLSSGPDKGLGSELIELNRLLLKAINSARESILIATPYFV---------PD--------RELLAALKAAARRGVDVRII 316 (438)
T ss_pred EEEecCCccccchhhhhHHHHHHHHHHhhceEEEEEcCCcC---------CC--------HHHHHHHHHHHhcCCEEEEE
Confidence 445555555 22232 2679999999999999997 644 11 57899999999999999999
Q ss_pred EecCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcce
Q 006854 305 VWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKI 384 (628)
Q Consensus 305 vwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~ 384 (628)
+ +..+..... .+........+.+.+.|+++.. ++.. ...|.|++|||++
T Consensus 317 ~-~~~~~~d~~------~~~~~~~~~~~~l~~~gv~i~~---~~~g-------------~~lH~K~~iiD~~-------- 365 (438)
T COG1502 317 I-PSLGANDSA------IVHAAYRAYLKELLEAGVKVYE---YPGG-------------AFLHSKVMIIDDR-------- 365 (438)
T ss_pred e-CCCCCCChH------HHHHHHHHHHHHHHHhCCEEEE---ecCC-------------CcceeeEEEEcCC--------
Confidence 7 743211100 0000123456667789999863 2210 2349999999998
Q ss_pred EEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhcc
Q 006854 385 TAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK 461 (628)
Q Consensus 385 vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~ 461 (628)
++++|+.|++..-+.. + ..+.+.|+.+ .+.++...|...|..+..
T Consensus 366 ~~~vGS~N~~~rS~~l---------------N-----------------~E~~~~i~d~~~~~~~~~~~~~~~~~s~~ 411 (438)
T COG1502 366 TVLVGSANLDPRSLRL---------------N-----------------FEVGLVIEDPELALKLRREFEADLARSKR 411 (438)
T ss_pred EEEEeCCcCCHhHHHH---------------h-----------------hhheeEEeCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999943321 0 2556777777 888999999977766543
No 135
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.65 E-value=3.4e-07 Score=97.42 Aligned_cols=170 Identities=16% Similarity=0.264 Sum_probs=106.3
Q ss_pred ecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCC
Q 006854 231 PLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKT 310 (628)
Q Consensus 231 ~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~g 310 (628)
+...|++- =+++|++.|.+|+++|+|..-...|......+.. -..|.++|++||-|||+||+|+ -...
T Consensus 269 ~~~~grt~----DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~~~-------fw~iDdaiR~aa~RgV~vR~lv-s~~~ 336 (456)
T KOG3603|consen 269 LNPSGRTW----DLEAILNTIDEAQKFVYISVMDYFPSTIYSKNHR-------FWEIDDAIRRAAVRGVKVRLLV-SCWK 336 (456)
T ss_pred CCCCCCch----hHHHHHHHHHHHhhheeeeehhccchheeecCcc-------hhhhhHHHHHHhhcceEEEEEE-eccC
Confidence 44566643 4889999999999999998766677654443321 2489999999999999999998 3332
Q ss_pred ccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEcc
Q 006854 311 SHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGG 390 (628)
Q Consensus 311 s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG 390 (628)
+.-+ ...+++.- ...+...+++-.|+|.+.- -|... . ........+|.|++|-+. .||+|.
T Consensus 337 -~~~~--~m~~~L~S-Lq~l~~~~~~~~iqvk~f~-VP~~~--~---~~ip~~Rv~HnKymVTe~---------aayIGT 397 (456)
T KOG3603|consen 337 -HSEP--SMFRFLRS-LQDLSDPLENGSIQVKFFI-VPQTN--I---EKIPFARVNHNKYMVTES---------AAYIGT 397 (456)
T ss_pred -CCCc--hHHHHHHH-HHHhcCccccCceEEEEEE-eCCCc--c---ccCchhhhccceeEEeec---------ceeeec
Confidence 1100 00000000 0111222345667766421 11110 0 022334688999999998 899999
Q ss_pred ccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeee---EeCHHHHHHHHHHHHHHhhhcc
Q 006854 391 IDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR---LDGPAAYDVLINFEQRWRKATK 461 (628)
Q Consensus 391 ~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~---l~Gpav~~l~~~F~~rW~~~~~ 461 (628)
.|.+-+||..- .+. -+-++ -.|+++.+|..+|.++|+....
T Consensus 398 SNws~dYf~~T------------------------aG~------~ivv~q~~~~~~~~~ql~~vFeRdW~S~Ys 441 (456)
T KOG3603|consen 398 SNWSGDYFTST------------------------AGT------AIVVRQTPHKGTLVSQLKAVFERDWNSTYS 441 (456)
T ss_pred cCCCccceecc------------------------Cce------EEEEecCCCCCcHHHHHHHHHhhccccccc
Confidence 99999888431 000 00011 3578999999999999987543
No 136
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.65 E-value=1.3e-07 Score=106.76 Aligned_cols=98 Identities=27% Similarity=0.513 Sum_probs=79.2
Q ss_pred CCcEEEEEECC----eeeeeec-cccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCC-CeeeEEEeccccccccCce
Q 006854 80 SDPYVTVVVPQ----ATVARTR-VLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (628)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~-v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~ 152 (628)
.||||.|.+-+ ....+|+ |..++.||.|+|+|.|++..+. .-|.|.|+|.|..+ |+|+|+..+|+..|..|-
T Consensus 641 ~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy- 719 (746)
T KOG0169|consen 641 SDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY- 719 (746)
T ss_pred CCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce-
Confidence 78998888754 4456899 5667999999999999988875 55799999999999 999999999999999884
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEee
Q 006854 153 ISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (628)
Q Consensus 153 ~~~w~~L~~~~~~~~~~~g~i~l~l~y~p 181 (628)
+-++|.+..|... ...+|.+.+++.+
T Consensus 720 --RhVpL~~~~G~~~-~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 720 --RHVPLLSREGEAL-SSASLFVRIAIVE 745 (746)
T ss_pred --eeeeecCCCCccc-cceeEEEEEEEec
Confidence 4577877777644 2357777777654
No 137
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.60 E-value=9.2e-09 Score=68.71 Aligned_cols=26 Identities=58% Similarity=0.994 Sum_probs=17.6
Q ss_pred cccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (628)
Q Consensus 363 ~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~ 396 (628)
.++||||++|||++ +||+||+|++++
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~ 27 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDG 27 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCC
Confidence 36899999999998 999999999874
No 138
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.59 E-value=1.4e-08 Score=112.34 Aligned_cols=95 Identities=19% Similarity=0.411 Sum_probs=78.7
Q ss_pred eeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCC-------------------------------------CCe
Q 006854 94 ARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVF-------------------------------------GAQ 135 (628)
Q Consensus 94 ~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~-------------------------------------~~~ 135 (628)
.-|+|+++|+||.|+|+|.|.+.+. ...+.+.+||+|.- .|+
T Consensus 179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD 258 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD 258 (1103)
T ss_pred hhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence 3588999999999999999999886 56789999998621 168
Q ss_pred eeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEEEEEEeecCCCCcccc
Q 006854 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQ 190 (628)
Q Consensus 136 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p~~~~~~~~~ 190 (628)
|+|.+.||+.++... ..+.||.| .+.....+..|.++|+|....++.....+.
T Consensus 259 FLGciNipl~EiP~~-Gld~WFkL-epRS~~S~VqG~~~LklwLsT~e~~~a~se 311 (1103)
T KOG1328|consen 259 FLGCINIPLAEIPPD-GLDQWFKL-EPRSDKSKVQGQVKLKLWLSTKEEGRAGSE 311 (1103)
T ss_pred cccccccchhcCCcc-hHHHHhcc-CcccccccccceEEEEEEEeeeccccccCc
Confidence 999999999999843 57899999 566667788999999999998876665443
No 139
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.54 E-value=2.8e-08 Score=110.13 Aligned_cols=91 Identities=22% Similarity=0.406 Sum_probs=81.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-----
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----- 90 (628)
+.+|.|.|+-|+++.+.|.+|. +||||.|.+.+
T Consensus 946 ~q~L~veVlhA~diipLD~NGl------------------------------------------SDPFVviEl~P~~~fp 983 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGL------------------------------------------SDPFVVIELIPKFRFP 983 (1103)
T ss_pred ccchhhhhhccccccccCCCCC------------------------------------------CCCeEEEEeccccccc
Confidence 4569999999999999999987 99999999977
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEEecCC-----CceEEEEEEEcCCCC-CeeeEEEeccccccc
Q 006854 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (628)
Q Consensus 91 -~~~~kT~v~~~~~~P~wne~f~~~~~~~-----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~ 148 (628)
-...+|+|+++|+||+|+|+|.|.++.+ ...|.|+|+|+|-++ ++|-|++.+.|..+.
T Consensus 984 ~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 984 AVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 3456999999999999999999999885 345899999999998 999999999998876
No 140
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.45 E-value=7.4e-07 Score=100.08 Aligned_cols=103 Identities=24% Similarity=0.402 Sum_probs=76.9
Q ss_pred CCcEEEEEECC-----eeeeeeccccCCCCCeEe-eEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCc
Q 006854 80 SDPYVTVVVPQ-----ATVARTRVLKNSQEPVWN-EHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (628)
Q Consensus 80 ~dpyv~v~l~~-----~~~~kT~v~~~~~~P~wn-e~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~ 151 (628)
+.|||+|.+-+ ...++|.|..+++||+|| |.|+|.+..| ..-|.|.|++.|+++ ..|||++..|+..|..|-
T Consensus 1085 ~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf 1164 (1267)
T KOG1264|consen 1085 ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF 1164 (1267)
T ss_pred cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc
Confidence 77999999854 333455666679999999 9999999887 466899999999999 589999999999999774
Q ss_pred eeEEEEEccCCCCCCCCCCceEEEEEEEeecCCCC
Q 006854 152 LISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186 (628)
Q Consensus 152 ~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p~~~~~ 186 (628)
+-++| .+.-+..-...+|.+.+...|.....
T Consensus 1165 ---RsVpL-kN~ySEdlELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1165 ---RSVPL-KNGYSEDLELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred ---eeeec-ccCchhhhhhhhheeeeEeccccCcc
Confidence 33556 33333222345677777777755443
No 141
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.23 E-value=1e-06 Score=102.33 Aligned_cols=109 Identities=21% Similarity=0.425 Sum_probs=91.4
Q ss_pred CceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEE
Q 006854 9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV 88 (628)
Q Consensus 9 ~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l 88 (628)
++...|-+|+|.|-|.-+++|+-... |.+ +||||+.+|
T Consensus 1516 ~LsIsY~~~~LtImV~H~K~L~~Lqd-----------------------------g~~-------------P~pyVK~YL 1553 (1639)
T KOG0905|consen 1516 KLSISYNNGTLTIMVMHAKGLALLQD-----------------------------GQD-------------PDPYVKTYL 1553 (1639)
T ss_pred EEEEEEcCceEEEEhhhhcccccccC-----------------------------CCC-------------CCcceeEEe
Confidence 35688999999999999999964332 222 999999999
Q ss_pred CC----eeeeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854 89 PQ----ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 89 ~~----~~~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
.+ ..+.||+|+.+|.+|.|||..... ++.. ...|.++||..+.+. +.++|.+.|+|..+....+..+||.|
T Consensus 1554 lPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1554 LPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred cCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 76 556799999999999999998876 3332 467999999998888 89999999999999977777799999
No 142
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.14 E-value=2.2e-05 Score=87.01 Aligned_cols=141 Identities=16% Similarity=0.124 Sum_probs=90.9
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~ 320 (628)
......+..+|.+|+++|+|+ +| ||. +. ..+.++|+.++++||+|+||+ .+..+... +...
T Consensus 250 ~~l~~~~~~li~~A~~~i~I~----TP--YF~--p~--------~~l~~~L~~a~~rGv~V~Ii~-~~~~andf--y~~~ 310 (451)
T PRK09428 250 NLLNKTIFHLMASAEQKLTIC----TP--YFN--LP--------AILVRNIIRLLRRGKKVEIIV-GDKTANDF--YIPP 310 (451)
T ss_pred hHHHHHHHHHHhccCcEEEEE----eC--CcC--CC--------HHHHHHHHHHHhcCCcEEEEc-CCcccccC--cCCC
Confidence 456778899999999999988 45 444 21 579999999999999999997 54422211 1111
Q ss_pred C--ccc-CChHHHHh-----------hhccCC---ceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcc
Q 006854 321 G--VMA-THDEETKK-----------FFKHSS---VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRK 383 (628)
Q Consensus 321 ~--~~~-~~~~~~~~-----------~l~~~g---v~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~ 383 (628)
+ ++. .......+ .+.++| |++.. ++ .+..|.|.++||++
T Consensus 311 d~~~~~~~~~py~ye~~lr~f~~~~~~li~~G~l~v~i~~---~~--------------~~~~HaK~i~vD~~------- 366 (451)
T PRK09428 311 DEPFKIIGALPYLYEINLRRFAKRLQYYIDNGQLNVRLWK---DG--------------DNSYHLKGIWVDDR------- 366 (451)
T ss_pred ccHHHHhhhhHHHHHHhhhhhHHHhhhhhhcCcceEEEEe---cC--------------CCcceEEEEEEeCC-------
Confidence 0 000 00011111 223444 55442 22 23459999999998
Q ss_pred eEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhh
Q 006854 384 ITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRK 458 (628)
Q Consensus 384 ~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~ 458 (628)
++++||.|+...-|.- | ..+.+.|..|. .+|...|.+....
T Consensus 367 -~~~iGS~Nld~RS~~l---------------n-----------------~E~~l~i~d~~-~~l~~~~~~E~~~ 407 (451)
T PRK09428 367 -WMLLTGNNLNPRAWRL---------------D-----------------LENALLIHDPK-QELAEQREKELEL 407 (451)
T ss_pred -EEEEcCCCCChhHhhh---------------c-----------------ccceEEEECCh-HHHHHHHHHHHHH
Confidence 9999999999955532 0 14566777776 7888888887754
No 143
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.98 E-value=9.7e-06 Score=90.66 Aligned_cols=104 Identities=16% Similarity=0.355 Sum_probs=81.6
Q ss_pred CCcEEEEEECC---eeeeeeccccCCCCCeEeeEEEEEecCC----------------CceEEEEEEE-cCCCC-CeeeE
Q 006854 80 SDPYVTVVVPQ---ATVARTRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKD-DDVFG-AQIIG 138 (628)
Q Consensus 80 ~dpyv~v~l~~---~~~~kT~v~~~~~~P~wne~f~~~~~~~----------------~~~l~i~v~d-~d~~~-~~~iG 138 (628)
+|||+++...+ ....+|++++.+.+|.|+|.|.|.+... ...|.+++|+ .+... +.|+|
T Consensus 151 ~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlG 230 (800)
T KOG2059|consen 151 CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLG 230 (800)
T ss_pred CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhce
Confidence 99999999754 2336999999999999999999987765 2357889998 45555 89999
Q ss_pred EEeccccccccCceeEEEEEccCCC-CC---CCCCCceEEEEEEEeecC
Q 006854 139 TAAIPAHTIATGELISRWYDIIAPS-GS---PPKPGASIQLELKFTPCD 183 (628)
Q Consensus 139 ~~~i~l~~l~~~~~~~~w~~L~~~~-~~---~~~~~g~i~l~l~y~p~~ 183 (628)
++.+|+..+.....-..||.|...+ |+ .....|.+++.++|+...
T Consensus 231 evrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~ 279 (800)
T KOG2059|consen 231 EVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDH 279 (800)
T ss_pred eEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeece
Confidence 9999999888666678899995222 22 344568999999988755
No 144
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.91 E-value=1.1e-05 Score=73.15 Aligned_cols=80 Identities=28% Similarity=0.488 Sum_probs=64.0
Q ss_pred CCcEEEEEEC---CeeeeeeccccCCCCCeEeeEEEEEecC--------C--------CceEEEEEEEcCCC--------
Q 006854 80 SDPYVTVVVP---QATVARTRVLKNSQEPVWNEHFNIPLAH--------P--------LSNLEIQVKDDDVF-------- 132 (628)
Q Consensus 80 ~dpyv~v~l~---~~~~~kT~v~~~~~~P~wne~f~~~~~~--------~--------~~~l~i~v~d~d~~-------- 132 (628)
.++||++.+. +.+..+|+++.++..|+|+.++.|+.+- . ...+.++||+...-
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 7899999853 3566799999999999999999998662 1 35689999987533
Q ss_pred ---CCeeeEEEecccccccc-CceeEEEEEc
Q 006854 133 ---GAQIIGTAAIPAHTIAT-GELISRWYDI 159 (628)
Q Consensus 133 ---~~~~iG~~~i~l~~l~~-~~~~~~w~~L 159 (628)
+|-.+|++.||+.+|.. ...+.+||++
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 25689999999999873 4567899985
No 145
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.77 E-value=0.00018 Score=74.26 Aligned_cols=139 Identities=19% Similarity=0.172 Sum_probs=90.7
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~ 320 (628)
..+-+.+.+.|.+|++.|-|..=.|+. . .-|.++|.++-+|||-|+||+ |..+..
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD-------~---------dIf~DLleAa~kR~VpVYiLL-D~~~~~-------- 187 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTD-------V---------DIFCDLLEAANKRGVPVYILL-DEQNLP-------- 187 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeecccc-------H---------HHHHHHHHHHHhcCCcEEEEe-chhcCh--------
Confidence 457889999999999999999877753 1 345565555559999999998 887532
Q ss_pred CcccCChHHHHhhhccCCce--------EEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEcccc
Q 006854 321 GVMATHDEETKKFFKHSSVN--------CVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGID 392 (628)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~--------~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~n 392 (628)
.+.++..+.+|+ |+.-. +..+....-.+....-|+|+++||+. .+++|+-=
T Consensus 188 --------~Fl~Mc~~~~v~~~~~~nmrVRsv~-----G~~y~~rsg~k~~G~~~eKF~lvD~~--------~V~~GSYS 246 (284)
T PF07894_consen 188 --------HFLEMCEKLGVNLQHLKNMRVRSVT-----GCTYYSRSGKKFKGQLKEKFMLVDGD--------KVISGSYS 246 (284)
T ss_pred --------HHHHHHHHCCCChhhcCCeEEEEec-----CCeeecCCCCeeeCcccceeEEEecc--------cccccccc
Confidence 233333333333 22100 00011111123446779999999998 88999876
Q ss_pred CCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHh
Q 006854 393 LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWR 457 (628)
Q Consensus 393 i~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~ 457 (628)
+++.-. .-| +-+...++|.+|....+.|..-..
T Consensus 247 FtWs~~--~~~------------------------------r~~~~~~tGq~Ve~FD~EFR~LyA 279 (284)
T PF07894_consen 247 FTWSSS--RVH------------------------------RNLVTVLTGQIVESFDEEFRELYA 279 (284)
T ss_pred eeeccc--ccc------------------------------cceeEEEeccccchHhHHHHHHHH
Confidence 655211 111 246789999999999999987653
No 146
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.61 E-value=5.3e-05 Score=50.75 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.3
Q ss_pred ccCcceEEEEecCCCCCCcceEEEEccccCCC
Q 006854 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (628)
Q Consensus 364 ~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~ 395 (628)
.++|+|++|||++ .+++||.|++.
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~ 26 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDG 26 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence 4679999999998 99999999987
No 147
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.00011 Score=76.02 Aligned_cols=103 Identities=23% Similarity=0.331 Sum_probs=82.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (628)
-.-|.|+++++.+|..+|.++. +||||...+.+ .
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~------------------------------------------sDpyvS~~l~pdv~~~ 269 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGY------------------------------------------SDPYVSQRLSPDVGKK 269 (362)
T ss_pred CCceEEEEEEeeeeeccccCCC------------------------------------------CCccceeecCCCcchh
Confidence 3458899999999999998887 99999999865 3
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 162 (628)
-+.||.+.+++.+|+||++|.|.+.+. ...+.|.|||.+.-+ .+++|-.... ..+.++...+|+.....
T Consensus 270 fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g--~~rr~~v~~h~gr~~~~ 342 (362)
T KOG1013|consen 270 FKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLG--GYRRGEVHKHWGRCLFD 342 (362)
T ss_pred hcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccc--ccccchhhcCccccccc
Confidence 346899999999999999999988874 457899999999886 7888865444 34556666777766433
No 148
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.00017 Score=75.92 Aligned_cols=109 Identities=22% Similarity=0.379 Sum_probs=88.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (628)
.|+|+|.|++|++|........ .++|||+|++.. .
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~-----------------------------------------~~apyVkVYlL~~g~c~ 306 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKS-----------------------------------------LPAPYVKVYLLENGFCI 306 (405)
T ss_pred cCceeEEEEecccccccCCccc-----------------------------------------ccCceeEEEEcCCCcee
Confidence 4789999999999975432111 289999999865 4
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEE-cCCCC-CeeeEEEeccccccccCc-eeEEEEEccCCCCC
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKD-DDVFG-AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS 165 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d-~d~~~-~~~iG~~~i~l~~l~~~~-~~~~w~~L~~~~~~ 165 (628)
.+.+|+...++..|.+-....|.-.++..-|.++||- ..+.. +.|+|.+.+-++++.... ...+||+|+.....
T Consensus 307 ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl 383 (405)
T KOG2060|consen 307 AKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSL 383 (405)
T ss_pred cccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCccC
Confidence 4468999999999999999999988889999999995 44444 689999999999999776 88999999766543
No 149
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=7.3e-05 Score=77.42 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=95.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (628)
...+..+|.+|++|.+|+.++. .|||+++.+++ .
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~------------------------------------------~d~~~~~~llpga~kl 129 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGL------------------------------------------ADPYVKLHLLPGAGKL 129 (362)
T ss_pred hhhcceeechhcccchhhhhhh------------------------------------------cchHHhhhcccchhhh
Confidence 3458899999999999998887 89999999876 3
Q ss_pred eeeeeccccCCCCCeEeeEEEEE--ecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCce--eEEEEEccCCCC
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIP--LAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL--ISRWYDIIAPSG 164 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~--~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~--~~~w~~L~~~~~ 164 (628)
...+|++..++.||.|+|+.... .... ...+.+.|.|.+.+. ++++|+..+++..+..... ..-|+.-.-+.+
T Consensus 130 ~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~ 209 (362)
T KOG1013|consen 130 NSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSE 209 (362)
T ss_pred hhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcc
Confidence 34689999999999999876655 2222 334678888888887 8999999999988875432 223443222211
Q ss_pred C----CCCCCceEEEEEEEeecCCCC
Q 006854 165 S----PPKPGASIQLELKFTPCDKNP 186 (628)
Q Consensus 165 ~----~~~~~g~i~l~l~y~p~~~~~ 186 (628)
. .....|.|.++|.|..+....
T Consensus 210 rad~~~~E~rg~i~isl~~~s~~~~l 235 (362)
T KOG1013|consen 210 RADRDEDEERGAILISLAYSSTTPGL 235 (362)
T ss_pred cccccchhhccceeeeeccCcCCCce
Confidence 1 235679999999998876555
No 150
>PF13918 PLDc_3: PLD-like domain
Probab=97.25 E-value=0.0012 Score=63.80 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=51.7
Q ss_pred CCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHh-hcCCEEEEEE
Q 006854 227 LPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLV 305 (628)
Q Consensus 227 ~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA-~rGV~VrILv 305 (628)
.|..+...|++.. .++++..|++|+++|||+.-.+-|..... .+..=| ..|.++|++|| +|||+||+|+
T Consensus 71 SPp~~~~~gRT~D----ldAIl~~I~~A~~fI~IsVMdY~P~~~~~-~~~~YW-----P~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 71 SPPPFCPKGRTLD----LDAILSVIDSAKKFIYISVMDYLPTSRYS-KPNRYW-----PVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred CCcccCCCCCCcH----HHHHHHHHHhHhheEEEEEeecCCeeecC-CCCCcc-----hhHHHHHHHHHHHcCCeEEEEE
Confidence 4555666676552 68999999999999999888777744321 111113 57999999987 8999999998
No 151
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.20 E-value=0.0017 Score=75.23 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=94.7
Q ss_pred eecCCCCccCCcchHHHHHHHHHhccc----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEE
Q 006854 230 IPLDGGKLYKPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (628)
Q Consensus 230 ~~l~~g~~y~~~~~f~~l~~aI~~Ak~----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILv 305 (628)
..|..||......+...+.+.|.+|++ +|+|.+-.+ . | ..+.++|..|+++||+|++|+
T Consensus 492 ~~l~~~P~~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l------~--D---------~~ii~aL~~As~aGV~V~Liv 554 (672)
T TIGR03705 492 KHLLVSPFTLRKRLLELIDREIENARAGKPARIIAKMNSL------V--D---------PDLIDALYEASQAGVKIDLIV 554 (672)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC------C--C---------HHHHHHHHHHHHCCCeEEEEE
Confidence 456777877777788888889999998 999884432 1 1 589999999999999999997
Q ss_pred ecCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceE
Q 006854 306 WDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT 385 (628)
Q Consensus 306 wD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~v 385 (628)
.+.=+.. ++.. |. ..++.+. .+- +.... |-|+...... +...
T Consensus 555 -RGiCcL~-pgip--g~-------------sd~i~v~---siv------------~r~Le-h~rIy~f~~~-----~d~~ 596 (672)
T TIGR03705 555 -RGICCLR-PGVP--GL-------------SENIRVR---SIV------------GRFLE-HSRIYYFGNG-----GEEK 596 (672)
T ss_pred -ecccccC-CCCC--CC-------------CCCEEEE---EEh------------hHhhC-cCEEEEEeCC-----CCcE
Confidence 6653321 1111 10 1223332 111 11223 7888887543 1239
Q ss_pred EEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHH-HHHHH-HHHHHHhhhcc
Q 006854 386 AFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAA-YDVLI-NFEQRWRKATK 461 (628)
Q Consensus 386 afvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav-~~l~~-~F~~rW~~~~~ 461 (628)
+|+|+.|+...-++- -..+.+.|..|.. +.+.. .+...|++..+
T Consensus 597 ~~igSAn~m~Rnl~~--------------------------------r~E~~~~i~d~~~~~~l~~~il~~~l~Dn~k 642 (672)
T TIGR03705 597 VYISSADWMTRNLDR--------------------------------RVEVLFPIEDPTLKQRVLDEILEAYLADNVK 642 (672)
T ss_pred EEEECCCCCCCcccc--------------------------------eEEEEEEEcCHHHHHHHHHHHHHHhCccccc
Confidence 999999998833321 1478888888854 55556 78888876544
No 152
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0012 Score=73.19 Aligned_cols=80 Identities=23% Similarity=0.325 Sum_probs=68.6
Q ss_pred CCcEEEEEEC-C-----eeeeeeccccCCCCCeEeeEEEEEecCCC----ceEEEEEEEcCCCC-CeeeEEEeccccccc
Q 006854 80 SDPYVTVVVP-Q-----ATVARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (628)
Q Consensus 80 ~dpyv~v~l~-~-----~~~~kT~v~~~~~~P~wne~f~~~~~~~~----~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~ 148 (628)
--|||++.+. + ..++.|+.+.++-.|.+||+|.|.+.... -.|.|.|+|....+ |.++|.+.++|.++.
T Consensus 1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence 5699999863 3 44567888889999999999999987753 35889999998888 899999999999999
Q ss_pred cCceeEEEEEc
Q 006854 149 TGELISRWYDI 159 (628)
Q Consensus 149 ~~~~~~~w~~L 159 (628)
.......|++|
T Consensus 1225 ~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1225 DKGSCACWVPL 1235 (1283)
T ss_pred hcCceeEeeec
Confidence 88888899999
No 153
>PRK05443 polyphosphate kinase; Provisional
Probab=97.09 E-value=0.0024 Score=74.32 Aligned_cols=142 Identities=16% Similarity=0.150 Sum_probs=90.5
Q ss_pred CCCccCCcchHHHHHHHHHhccc----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCC
Q 006854 234 GGKLYKPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309 (628)
Q Consensus 234 ~g~~y~~~~~f~~l~~aI~~Ak~----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~ 309 (628)
-.|...+..+.+.+.++|.+|++ +|++.+-.+ . | ..+.++|..|+++||+|+||+ .+.
T Consensus 505 ~sP~~~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~l------~--d---------~~ii~aL~~As~~GV~V~liV-RGi 566 (691)
T PRK05443 505 VSPFTLRERLLELIDREIANARAGKPARIIAKMNSL------V--D---------PQIIDALYEASQAGVKIDLIV-RGI 566 (691)
T ss_pred ecCccHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC------C--C---------HHHHHHHHHHHHCCCeEEEEE-ecc
Confidence 33455556777888889999998 999884432 1 1 589999999999999999997 665
Q ss_pred CccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEc
Q 006854 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIG 389 (628)
Q Consensus 310 gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvG 389 (628)
=+. .++.. |. ..++.|. . ++. -... |-|+...+.. +...+|+|
T Consensus 567 C~l-~pgip--g~-------------sd~i~v~---s-------~v~-----r~Le-h~rIy~f~~g-----d~~~~~iG 609 (691)
T PRK05443 567 CCL-RPGVP--GL-------------SENIRVR---S-------IVG-----RFLE-HSRIYYFGNG-----GDEEVYIS 609 (691)
T ss_pred ccc-CCCCC--CC-------------CCCEEEH---H-------HHH-----HHHh-cCEEEEEeCC-----CCcEEEEE
Confidence 332 11111 00 1112221 0 110 1112 5677777432 11299999
Q ss_pred cccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhccc
Q 006854 390 GIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKL 462 (628)
Q Consensus 390 G~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~~ 462 (628)
+.|+...-++- -..+.+-|..| .++.+...|..+|....+.
T Consensus 610 SAn~d~Rsl~~--------------------------------r~Ev~~~i~d~~~~~~l~~~~~~~l~dn~ka 651 (691)
T PRK05443 610 SADWMPRNLDR--------------------------------RVEVLFPILDPRLKQRLLEILEIQLADNVKA 651 (691)
T ss_pred CCCCCcccccc--------------------------------eEEEeEEEeCHHHHHHHHHHHHHHHhhhhhe
Confidence 99998843321 15788888887 5777888899999876543
No 154
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.04 E-value=0.00037 Score=80.95 Aligned_cols=88 Identities=23% Similarity=0.396 Sum_probs=75.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCee-ee
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VA 94 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~-~~ 94 (628)
.-..+|.|.+|-+|.+.|.++. +|||+++.++.+. .-
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~------------------------------------------adpYv~l~lGk~~~~d 649 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGD------------------------------------------ADPYVKLLLGKKRTLD 649 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCC------------------------------------------cCceeeeeeccchhhh
Confidence 3457799999999999888887 9999999998733 34
Q ss_pred eeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEecccc
Q 006854 95 RTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAH 145 (628)
Q Consensus 95 kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~ 145 (628)
++.-+.+++||+|++-|.+...-+ ...++++|+|+|.++ |+.||+..+.|+
T Consensus 650 ~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 650 RAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE 702 (1105)
T ss_pred hhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhh
Confidence 788889999999999998886665 456899999999998 999999999886
No 155
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=97.04 E-value=0.019 Score=60.94 Aligned_cols=138 Identities=18% Similarity=0.220 Sum_probs=81.7
Q ss_pred chHHHHHHHHHhcc-----ceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccc
Q 006854 242 TCWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (628)
Q Consensus 242 ~~f~~l~~aI~~Ak-----~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~ 316 (628)
+-|..+.+-|++|- .+|.++-|.. . ....+.++|++||+.|=+|-+++ ..-..
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLYR~---------a-------~~S~iv~aLi~AA~nGK~Vtv~v--ELkAR---- 75 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLYRV---------A-------SNSPIVNALIEAAENGKQVTVLV--ELKAR---- 75 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEESSS-----------------TT-HHHHHHHHHHHTT-EEEEEE--STTSS----
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEEec---------C-------CCCHHHHHHHHHHHcCCEEEEEE--EEecc----
Confidence 45777888888873 6777776643 2 13689999999999999999998 33111
Q ss_pred ccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (628)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~ 396 (628)
+-+...-.+.+.|+++||+|.+ ..|+ +.-|-|+++|=-+..+ .-+..+++|-=|...
T Consensus 76 -----FDEe~Ni~Wa~~Le~aGv~Viy--G~~g--------------lKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe- 132 (352)
T PF13090_consen 76 -----FDEENNIHWAKRLEEAGVHVIY--GVPG--------------LKVHAKICLIVRREGG-GLRRYAHLGTGNYNE- 132 (352)
T ss_dssp -----STTCCCCCCCHHHHHCT-EEEE----TT---------------EE--EEEEEEEEETT-EEEEEEEEESS-SST-
T ss_pred -----ccHHHHhHHHhhHHhcCeEEEc--CCCC--------------hhheeeEEEEEEEeCC-cEEEEEEEcCCCcCc-
Confidence 1111122356779999999985 2222 2349999999554111 123466666544444
Q ss_pred CCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHH
Q 006854 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR 455 (628)
Q Consensus 397 r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~r 455 (628)
....-+-|..+.-.-| .+.|+...|..-
T Consensus 133 -------------------------------~TAr~YtD~~l~Ta~~~i~~D~~~~F~~l 161 (352)
T PF13090_consen 133 -------------------------------KTARIYTDLSLFTADPEIGADVAKLFNYL 161 (352)
T ss_dssp -------------------------------THCCCEEEEEEEE--HHHHHHHHHHHHHH
T ss_pred -------------------------------cchhheecceeecCCHHHHHHHHHHHHHH
Confidence 1123577998888776 788888887644
No 156
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.03 E-value=0.00045 Score=73.42 Aligned_cols=98 Identities=15% Similarity=0.303 Sum_probs=79.4
Q ss_pred CCcEEEEEEC----CeeeeeeccccCCCCCeEeeEEEEEecCC------------CceEEEEEEEcCCCC--CeeeEEEe
Q 006854 80 SDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHP------------LSNLEIQVKDDDVFG--AQIIGTAA 141 (628)
Q Consensus 80 ~dpyv~v~l~----~~~~~kT~v~~~~~~P~wne~f~~~~~~~------------~~~l~i~v~d~d~~~--~~~iG~~~ 141 (628)
.|-||++.+. .....+|.+++.+.+|.|+|.|-+.+... ...++|+++.+..|- |.++|++.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 7788888763 24457999999999999999999988772 235799999988774 89999999
Q ss_pred ccccccccCceeEEEEEccCCCCCCCCCCceEEEEEEEe
Q 006854 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (628)
Q Consensus 142 i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~ 180 (628)
+.|.-|.....+...++|.+... ..+|.|.++++..
T Consensus 468 ikle~Len~cei~e~~~l~DGRK---~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDGRK---AVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceecccccc---ccCCeeEEEEEEe
Confidence 99999988778889999965432 3568999988853
No 157
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=97.01 E-value=0.0013 Score=63.23 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 559 e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
...+.+.++.+|.+|++.|+|+++||.+.. .....+|.++|.+|.++|.+++|++
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~~rGv~V~il~ 73 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAARRGVKVRILV 73 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHHHCCCEEEEEE
Confidence 467999999999999999999999998742 1123479999999999999999886
No 158
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.05 Score=61.56 Aligned_cols=136 Identities=21% Similarity=0.257 Sum_probs=86.4
Q ss_pred chHHHHHHHHHhccc-----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccc
Q 006854 242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (628)
Q Consensus 242 ~~f~~l~~aI~~Ak~-----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~ 316 (628)
+.|+.+.+-|++|-. .|-+.-| |.. +...|.++|++||+.|-+|-+|| ..-..
T Consensus 352 eSF~~Vv~fl~qAA~DP~VLAIKqTLY---------Rt~-------~dSpIV~ALi~AA~nGKqVtvlV--ELkAR---- 409 (696)
T COG0855 352 ESFEPVVEFLRQAAADPDVLAIKQTLY---------RTS-------KDSPIVRALIDAAENGKQVTVLV--ELKAR---- 409 (696)
T ss_pred hhhHHHHHHHHHhhcCCCeEEEEEEEE---------ecC-------CCCHHHHHHHHHHHcCCeEEEEE--EEhhh----
Confidence 678889999999852 3444444 322 24689999999999999999998 22111
Q ss_pred ccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (628)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~ 396 (628)
+-.+.+-.+.+.|+.+|++|.+ .++ .+.-|.|+++|=-+ ++++..-|+ -++.|
T Consensus 410 -----FDEE~NI~WAk~LE~AGvhVvy--G~~--------------glKtHAKm~lVvRr---E~~~lrrY~---HlGTG 462 (696)
T COG0855 410 -----FDEEANIHWAKRLERAGVHVVY--GVV--------------GLKTHAKMLLVVRR---EGGKLRRYV---HLGTG 462 (696)
T ss_pred -----cChhhhhHHHHHHHhCCcEEEe--ccc--------------ceeeeeeEEEEEEe---cCCcEEEEE---EecCC
Confidence 1112223467889999999985 222 23459999999554 233455555 23343
Q ss_pred CCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHH
Q 006854 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFE 453 (628)
Q Consensus 397 r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~ 453 (628)
-| |+. ...-+-|+++.-.-| .++|+...|.
T Consensus 463 NY----n~~-----------------------TAriYTD~sl~Tad~~i~~Dv~~lFn 493 (696)
T COG0855 463 NY----NPK-----------------------TARLYTDLSLLTADPEIGADVTDLFN 493 (696)
T ss_pred CC----Ccc-----------------------ceeeeeechhccCCHHHHHHHHHHHH
Confidence 22 111 112456887766665 7888888886
No 159
>PLN02964 phosphatidylserine decarboxylase
Probab=96.83 E-value=0.0021 Score=73.93 Aligned_cols=86 Identities=21% Similarity=0.355 Sum_probs=69.3
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCCce-EEEEEEEcCCCC-CeeeEEEeccccccccCcee--EE
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI--SR 155 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~-l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~--~~ 155 (628)
.|+|..+..-+.+++||.+.++|.||+|||...|.+.+.... ..|.|||.+.++ ++.+|.+++++.++...+.. .+
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 788888877777889999999999999999999998886544 599999999999 99999999988877754332 22
Q ss_pred EEEccCCCCC
Q 006854 156 WYDIIAPSGS 165 (628)
Q Consensus 156 w~~L~~~~~~ 165 (628)
-|.++++++.
T Consensus 148 aF~lfD~dgd 157 (644)
T PLN02964 148 SFDLLDPSSS 157 (644)
T ss_pred HHHHHCCCCC
Confidence 3666666654
No 160
>PRK13912 nuclease NucT; Provisional
Probab=96.60 E-value=0.0045 Score=60.23 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 560 ~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
..+...++.+|.+|+++|+|+. |++++. .|+++|.+|.++|.++||++
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~~-----------------~i~~aL~~Aa~RGV~VrIll 79 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTHK-----------------DIAKALKSAAKRGVKISIIY 79 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEchH-----------------HHHHHHHHHHHCCCEEEEEE
Confidence 4678999999999999999996 666653 79999999999999999986
No 161
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=96.35 E-value=0.052 Score=52.74 Aligned_cols=144 Identities=19% Similarity=0.272 Sum_probs=100.8
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~ 320 (628)
+.+.+++...|+.|++-..+..|+... | -.-+.+.|..+..+||++|||- +...+..
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~s--------------G-~sll~~~L~d~~~Kgvkgkilt-s~YlnfT------- 94 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITES--------------G-LSLLFDLLLDLVNKGVKGKILT-SDYLNFT------- 94 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeCc--------------c-HHHHHHHHHHHhcCCceEEEec-ccccCcc-------
Confidence 468999999999999988888887522 1 3578999999999999999996 7665443
Q ss_pred CcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCC
Q 006854 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (628)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~ 400 (628)
++....+.+.-.+|+++++.. ....+|-|-.+.-.+ ..-.|++|+.|+++.-.-.
T Consensus 95 -----dP~al~~Ll~~~nve~r~~~~---------------~~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~ 149 (198)
T COG3886 95 -----DPVALRKLLMLKNVELRVSTI---------------GSANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV 149 (198)
T ss_pred -----CHHHHHHHHhhhccceEEEec---------------CccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence 244556666666688875321 123458888776443 2248999999999954422
Q ss_pred CCCCCccCCcccccCCCCCCCCCCCCCCCCCCce-eeeeeEeCHHHHHHHHHHHHHHh-hhcc
Q 006854 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH-DLHCRLDGPAAYDVLINFEQRWR-KATK 461 (628)
Q Consensus 401 ~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWh-D~~~~l~Gpav~~l~~~F~~rW~-~~~~ 461 (628)
.| .|- -+...-.|..|+++...|...|. ..+.
T Consensus 150 -n~----------------------------Ewn~k~s~~~~g~i~~~~k~~f~r~~~~~~t~ 183 (198)
T COG3886 150 -NE----------------------------EWNLKVSSSKNGDIVKEVKVTFERQFQNKITP 183 (198)
T ss_pred -CH----------------------------HHHhhhccccccchHHHHHHHHHHHHHhhccc
Confidence 11 121 23344578999999999999997 4433
No 162
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.25 E-value=0.0032 Score=53.65 Aligned_cols=77 Identities=14% Similarity=0.326 Sum_probs=56.2
Q ss_pred CCcEEEEEE--CCeeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCCCeeeEEEeccccccccCceeE
Q 006854 80 SDPYVTVVV--PQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELIS 154 (628)
Q Consensus 80 ~dpyv~v~l--~~~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~ 154 (628)
..-|++-.+ +..-..||++...+.||+|.|+|.|.+... ...|-|.|+. .+-+...||.+.+.++++-. ++.+
T Consensus 21 ~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~ge-eE~~ 98 (103)
T cd08684 21 PTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLST-QETD 98 (103)
T ss_pred CeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCCH-HHhh
Confidence 445666543 444457999999999999999999986653 3457788887 33347899999999987763 3456
Q ss_pred EEEE
Q 006854 155 RWYD 158 (628)
Q Consensus 155 ~w~~ 158 (628)
+|.+
T Consensus 99 HW~e 102 (103)
T cd08684 99 HWLE 102 (103)
T ss_pred hhhc
Confidence 7754
No 163
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.21 E-value=0.00089 Score=77.89 Aligned_cols=102 Identities=22% Similarity=0.254 Sum_probs=78.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeee
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~k 95 (628)
+..|++.|++|+.|..+++.+. +|||..+.+.+.. ..
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~------------------------------------------sdp~a~v~f~~qs-~~ 241 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDE------------------------------------------SDPDAAVEFCGQS-KE 241 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccC------------------------------------------CCchhhhhccccc-ce
Confidence 3446777888999988776655 9999999987755 48
Q ss_pred eccccCCCCCeEeeEEEEE---ecC-------CCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccC
Q 006854 96 TRVLKNSQEPVWNEHFNIP---LAH-------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (628)
Q Consensus 96 T~v~~~~~~P~wne~f~~~---~~~-------~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 161 (628)
|-++.+++||.|++...|. +.. ....+.|+++|.+..+ ++++|.......-... .+...|+++..
T Consensus 242 T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r 317 (1105)
T KOG1326|consen 242 TEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR 317 (1105)
T ss_pred eEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeec
Confidence 9999999999999998884 222 1245689999999988 9999998776553332 45678999853
No 164
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.91 E-value=0.036 Score=64.21 Aligned_cols=100 Identities=25% Similarity=0.414 Sum_probs=76.1
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
+-+++.|+|+++.-|..++ ...||.|.+-+
T Consensus 701 IA~t~sV~VISgqFLSdrk----------------------------------------------vgtyVEVdmfgLP~D 734 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK----------------------------------------------VGTYVEVDMFGLPTD 734 (1189)
T ss_pred EEeeEEEEEEeeeeccccc----------------------------------------------cCceEEEEecCCCch
Confidence 4566899999999887643 45799998733
Q ss_pred --eeeeeeccccC-CCCCeEeeE-EEEE--ecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCC
Q 006854 91 --ATVARTRVLKN-SQEPVWNEH-FNIP--LAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (628)
Q Consensus 91 --~~~~kT~v~~~-~~~P~wne~-f~~~--~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~ 164 (628)
.+.+||++... +.||+|+|+ |.|. +.+....|.|.|++.. .++||.-.+|+..|..|- +.+.|.+..+
T Consensus 735 t~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg---gK~ig~RIlpvd~l~~GY---rhv~LRse~N 808 (1189)
T KOG1265|consen 735 TIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG---GKFIGQRILPVDGLNAGY---RHVCLRSESN 808 (1189)
T ss_pred hhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC---CceeeeeccchhcccCcc---eeEEecCCCC
Confidence 34468887775 999999964 7886 5556778999999875 479999999999999874 4566766665
Q ss_pred CC
Q 006854 165 SP 166 (628)
Q Consensus 165 ~~ 166 (628)
++
T Consensus 809 qp 810 (1189)
T KOG1265|consen 809 QP 810 (1189)
T ss_pred Cc
Confidence 54
No 165
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.54 E-value=0.055 Score=54.99 Aligned_cols=50 Identities=30% Similarity=0.304 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEec
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD 307 (628)
+.....+.+.|++|+++|+|+.|. . + -..+.+.|++|.+|||+|.++++.
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~--~---~------------l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPP--E---F------------LEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-G--G---G------------HHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCH--H---H------------HHHHHHHHHHHHHCCCEEEEEEeC
Confidence 568899999999999999999871 1 1 157999999999999999999855
No 166
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=95.49 E-value=0.028 Score=50.65 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=34.7
Q ss_pred HHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 566 YIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 566 y~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
++++|.+|+++|+|.++||... +|.++|..+.++|.++++++
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~~~~gv~v~ii~ 42 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDAAKRGVKVRIIV 42 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHHHHCCCeEEEEE
Confidence 4689999999999999999443 58999999999999999986
No 167
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.28 E-value=0.19 Score=53.80 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=79.4
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC--------CceEEEEEEEcCCC-C-CeeeEEEecccccc--
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVF-G-AQIIGTAAIPAHTI-- 147 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~--------~~~l~i~v~d~d~~-~-~~~iG~~~i~l~~l-- 147 (628)
..-.+...++++. ..|-.+..+..|.||-.....+... ..+|+++++..|.. + -+.||.+.++|...
T Consensus 18 ~~~vv~a~~ng~~-l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~ 96 (340)
T PF12416_consen 18 HPIVVEAKFNGES-LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVV 96 (340)
T ss_pred ccEEEEEEeCCce-eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccc
Confidence 3457777888766 5788888899999998888876552 56799999998833 3 78999999999988
Q ss_pred -ccC--ceeEEEEEccCCCCCCCCCCceEEEEEEEeecCC
Q 006854 148 -ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (628)
Q Consensus 148 -~~~--~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p~~~ 184 (628)
..+ .....||+|++.+++-.+..-+|+|.|.......
T Consensus 97 ~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 97 PQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred ccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 544 4567899998885554455678888888766544
No 168
>PLN02352 phospholipase D epsilon
Probab=95.17 E-value=0.043 Score=63.97 Aligned_cols=62 Identities=21% Similarity=0.258 Sum_probs=39.0
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCC----CCcHHHHHHHHhh--cCCEEEEEE
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGG----DLTLGELLKYKSE--EGVRVLLLV 305 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~----~~~l~~~L~~aA~--rGV~VrILv 305 (628)
.++..+.++||++||+.|||+.=-|....+.+..+.. .|. +..|.+.|.+|.+ ++-+|.|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~---~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNH---CGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccc---cchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 6799999999999999999974333222122211110 010 1367777777654 578888887
No 169
>PLN03008 Phospholipase D delta
Probab=94.82 E-value=0.034 Score=65.21 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=40.7
Q ss_pred eecCCCCccCC-cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCC----CCcHHHHHHHHh--hcCCEEE
Q 006854 230 IPLDGGKLYKP-GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGG----DLTLGELLKYKS--EEGVRVL 302 (628)
Q Consensus 230 ~~l~~g~~y~~-~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~----~~~l~~~L~~aA--~rGV~Vr 302 (628)
..|.+|+...- ..+..+.+++|++|++.|||+.=-|....+.+..... .|. ...|...|.+|. .++-+|+
T Consensus 554 ~~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~---~~~~n~I~~eia~kI~~ki~~~e~f~V~ 630 (868)
T PLN03008 554 QHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRD---AGADNLIPMELALKIVSKIRAKERFAVY 630 (868)
T ss_pred hccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccc---cccccchhHHHHHHHHHHHhCCCCCEEE
Confidence 33444443322 3467899999999999999974333222111110000 111 134555665544 5688898
Q ss_pred EEE
Q 006854 303 LLV 305 (628)
Q Consensus 303 ILv 305 (628)
|++
T Consensus 631 IVi 633 (868)
T PLN03008 631 VVI 633 (868)
T ss_pred EEE
Confidence 887
No 170
>PLN02270 phospholipase D alpha
Probab=94.80 E-value=0.057 Score=63.25 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=74.4
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccC-CCCCCCCC----CCcHHHHHHHHh--hcCCEEEEEEecCCCccC
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQ-TRPLPRGG----DLTLGELLKYKS--EEGVRVLLLVWDDKTSHD 313 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~-~~~~~~g~----~~~l~~~L~~aA--~rGV~VrILvwD~~gs~~ 313 (628)
.++..+.+.||++|+++|||+.=-|....+-+..+ -.+...|. ...|...|++|. .++-+|+|++ ..... .
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi-P~~pe-G 575 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV-PMWPE-G 575 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE-CCCCC-C
Confidence 67899999999999999999743332221111100 00000111 134555566644 4688999987 33211 1
Q ss_pred ccccc--------CCCcccCChHHHHhhhccCCceE----E---eccC----------CCCC----ccch-hhhcccccc
Q 006854 314 KLGVK--------TPGVMATHDEETKKFFKHSSVNC----V---LAPR----------YASS----KLSY-FKQQIVGTI 363 (628)
Q Consensus 314 ~~~~~--------~~~~~~~~~~~~~~~l~~~gv~~----~---~~~~----------~~~~----~~~~-~~~~~~~~~ 363 (628)
.+... ..-.|...-....+.|+.+|+.. + ++.. .|.. .... ..+...+..
T Consensus 576 ~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~ 655 (808)
T PLN02270 576 IPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFM 655 (808)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhcccee
Confidence 11000 00011111233456677776631 1 1100 0100 0000 000000112
Q ss_pred ccCcceEEEEecCCCCCCcceEEEEccccCCCCCCC
Q 006854 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD 399 (628)
Q Consensus 364 ~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d 399 (628)
.--|.|++|||++ ++.+|+.||.+..++
T Consensus 656 I~vH~K~~ivDd~--------~~~iGSaN~n~rS~~ 683 (808)
T PLN02270 656 IYVHTKMMIVDDE--------YIIIGSANINQRSMD 683 (808)
T ss_pred EEEeeeEEEEcCC--------EEEEecccccccccc
Confidence 3459999999998 999999999996665
No 171
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=94.76 E-value=0.054 Score=60.45 Aligned_cols=83 Identities=27% Similarity=0.402 Sum_probs=60.8
Q ss_pred CCcEEEEEEC--C---eeeeeeccccCCCCCeEeeEEEEEecC-----CCceEEEEEEEcCCCC-CeeeEEEeccccccc
Q 006854 80 SDPYVTVVVP--Q---ATVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (628)
Q Consensus 80 ~dpyv~v~l~--~---~~~~kT~v~~~~~~P~wne~f~~~~~~-----~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~ 148 (628)
+|||..+.-- . ...++|.+++++++|.|-+ |.+++.. ....+.+.++|.+..+ +++||++..++.++.
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 9999988742 2 4567999999999999974 5555333 3567899999999988 799999999999887
Q ss_pred cCceeEEEEEccCCCC
Q 006854 149 TGELISRWYDIIAPSG 164 (628)
Q Consensus 149 ~~~~~~~w~~L~~~~~ 164 (628)
. .....-+.++.+..
T Consensus 236 ~-~~~~~~~~~~~~~~ 250 (529)
T KOG1327|consen 236 E-PGSPNQIMLINPKK 250 (529)
T ss_pred c-cCCcccccccChhh
Confidence 4 22233344444443
No 172
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.46 E-value=1.2 Score=41.16 Aligned_cols=103 Identities=18% Similarity=0.275 Sum_probs=67.8
Q ss_pred CCcEEEEEECCee--eeeecccc-CCCCCeEeeEEEEEecCC---------CceEEEEEEEcCCCCC-eeeEEEeccccc
Q 006854 80 SDPYVTVVVPQAT--VARTRVLK-NSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVFGA-QIIGTAAIPAHT 146 (628)
Q Consensus 80 ~dpyv~v~l~~~~--~~kT~v~~-~~~~P~wne~f~~~~~~~---------~~~l~i~v~d~d~~~~-~~iG~~~i~l~~ 146 (628)
...||+...+... ...|.... .+..-.|||.|.+++.-. ...++|.|+....-+. ..+|.+.|.|.+
T Consensus 24 ~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLae 103 (143)
T PF10358_consen 24 GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAE 103 (143)
T ss_pred CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHH
Confidence 3356666655533 23333333 366779999998873321 2347888888754343 599999999999
Q ss_pred cccC--ceeEEEEEccCCCCCCCCCCceEEEEEEEeecCCCC
Q 006854 147 IATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186 (628)
Q Consensus 147 l~~~--~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p~~~~~ 186 (628)
+... .....-++|... .+....|+++|.+.+....+
T Consensus 104 y~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 104 YANEDEEPITVRLLLKKC----KKSNATLSISISLSELREDP 141 (143)
T ss_pred hhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEECccCC
Confidence 9963 566677777433 24557899999988876554
No 173
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=94.08 E-value=0.16 Score=59.54 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=69.6
Q ss_pred cchHHHHHHHHHhccceEEEEEEEE-ecccceeccCCCCCCCCCCCcHHHHHHHHhh--cCCEEEEEEecCC-CccC--c
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSV-FHKIKLIREQTRPLPRGGDLTLGELLKYKSE--EGVRVLLLVWDDK-TSHD--K 314 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f-~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~--rGV~VrILvwD~~-gs~~--~ 314 (628)
..+-.+.+++|++|+|.|||+.=-| +.... + +. ....+ +..|..-+.+|.+ +--+|+|++ ... |--. .
T Consensus 565 ~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~-~--~~-~~n~v-~~ela~rIv~a~ra~e~frVYIVI-PL~PgfEG~~~ 638 (887)
T KOG1329|consen 565 DSIQNAYVKAIRNAEHFIYIENQFFIGSSFN-W--DS-VLNKV-GDELALRIVKAIRAGEKFRVYIVI-PLWPGFEGDDT 638 (887)
T ss_pred HHHHHHHHHHHHhccceEEEeeeeEEeeccC-C--Cc-ccchH-HHHHHHHHHHHHhcCCceEEEEEE-eCCccccCCCC
Confidence 5678899999999999999964222 21100 1 11 00011 1344444444444 456778876 222 1111 1
Q ss_pred ccccCCCc-----------ccCChHHHHhhhccCCceEE----eccCCCCCccchhh---hccccccccCcceEEEEecC
Q 006854 315 LGVKTPGV-----------MATHDEETKKFFKHSSVNCV----LAPRYASSKLSYFK---QQIVGTIFTHHQKCVLVDTQ 376 (628)
Q Consensus 315 ~~~~~~~~-----------~~~~~~~~~~~l~~~gv~~~----~~~~~~~~~~~~~~---~~~~~~~~r~HqK~vVVDg~ 376 (628)
+ ..+- |........+.|+..|+.=. +...+-.. .++ +.+.+-..-=|-|++|||++
T Consensus 639 p---~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g---~~e~~~~~~~~emIYVHsK~mIvDD~ 712 (887)
T KOG1329|consen 639 P---GSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLG---NREEQAQRLRREMIYVHSKLMIVDDE 712 (887)
T ss_pred C---CcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeee---ccccccccceEEEEEEeeeeEEecCC
Confidence 1 0110 11112334556666666511 10000000 000 00111112349999999998
Q ss_pred CCCCCcceEEEEccccCCCCCCCC
Q 006854 377 ASGNNRKITAFIGGIDLCDGRYDT 400 (628)
Q Consensus 377 ~~~~~~~~vafvGG~ni~~~r~d~ 400 (628)
.+++|+.||.+...++
T Consensus 713 --------~vIIGSANINqRSm~G 728 (887)
T KOG1329|consen 713 --------YVIIGSANINQRSMLG 728 (887)
T ss_pred --------EEEEeecccchhhccC
Confidence 9999999999955543
No 174
>PF13918 PLDc_3: PLD-like domain
Probab=93.85 E-value=0.64 Score=45.18 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHH-HHcCCceEEEEE
Q 006854 561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASK-IRANERFAVARR 626 (628)
Q Consensus 561 ~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a-~~~~~~~~v~i~ 626 (628)
.=.+|.+..|..|++||||+===++|.... .+...-+ ..|=++|.+| +.+|+++|+.|-
T Consensus 82 ~DldAIl~~I~~A~~fI~IsVMdY~P~~~~---~~~~~YW----P~ID~ALR~AA~~R~V~VRlLIS 141 (177)
T PF13918_consen 82 LDLDAILSVIDSAKKFIYISVMDYLPTSRY---SKPNRYW----PVIDDALRRAAIERGVKVRLLIS 141 (177)
T ss_pred cHHHHHHHHHHhHhheEEEEEeecCCeeec---CCCCCcc----hhHHHHHHHHHHHcCCeEEEEEe
Confidence 345899999999999999997666665421 1112222 3566677666 489999999884
No 175
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=93.81 E-value=0.69 Score=44.02 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=66.0
Q ss_pred EEEECCeeeeeeccccCCCCCeEeeEEEEEecCCC--------------ceEEEEEEEcCCCC-CeeeEEEecccccccc
Q 006854 85 TVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------------SNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (628)
Q Consensus 85 ~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~--------------~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~ 149 (628)
-+.+.+ +.++|+.+.++.+|.|+|.|.|.+.... .+|.+-|---|..+ ..++|.-.+.-..+..
T Consensus 39 ~l~f~~-QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~ 117 (156)
T PF15627_consen 39 HLHFRG-QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLC 117 (156)
T ss_pred EEEecC-ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhc
Confidence 333455 4589999999999999999999987752 34666666666655 5788888887766554
Q ss_pred Ccee--EEEEEccCCCCCCCCCCceEEEEEEEeecC
Q 006854 150 GELI--SRWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (628)
Q Consensus 150 ~~~~--~~w~~L~~~~~~~~~~~g~i~l~l~y~p~~ 183 (628)
.... .--..|.+......-..|-|.++++..|.-
T Consensus 118 s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 118 SGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred cCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 3332 233444333333234679999999988853
No 176
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=91.86 E-value=3.1 Score=39.77 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=41.6
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-----CeeeEEEecccc
Q 006854 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (628)
Q Consensus 80 ~dpyv~v~l--~~~~~---~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-----~~~iG~~~i~l~ 145 (628)
+|-||++.+ +.... ..|+-+.. .++.|||-.+|++.-. .+.|.|+||+...-+ ...+|.+.++|-
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 567887765 33211 13433333 6799999988875542 567899999865321 256888777764
Q ss_pred c
Q 006854 146 T 146 (628)
Q Consensus 146 ~ 146 (628)
+
T Consensus 105 d 105 (158)
T cd08398 105 D 105 (158)
T ss_pred C
Confidence 4
No 177
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=89.98 E-value=2 Score=37.19 Aligned_cols=85 Identities=19% Similarity=0.274 Sum_probs=61.9
Q ss_pred CCCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEE
Q 006854 79 TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD 158 (628)
Q Consensus 79 ~~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 158 (628)
-.+..+.+.+++..+..|.-... .+..|+++|+|.+.. ...|+|.|+-+|. ....|...+.|++..-+ .-.+
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~--RslCav~~lrLEd~~~~----~~~~ 79 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQLD 79 (98)
T ss_pred ccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc--hhhhhheeeEhhhhccc----ceec
Confidence 36788899999988888877665 588999999999986 6689999987754 34566677777763211 1222
Q ss_pred ccCCCCCCCCCCceEEEEEEE
Q 006854 159 IIAPSGSPPKPGASIQLELKF 179 (628)
Q Consensus 159 L~~~~~~~~~~~g~i~l~l~y 179 (628)
| .+.|.+..++.|
T Consensus 80 l--------epqg~l~~ev~f 92 (98)
T cd08687 80 M--------EPQLCLVAELTF 92 (98)
T ss_pred c--------ccccEEEEEEEe
Confidence 3 345888888887
No 178
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=89.44 E-value=0.37 Score=51.73 Aligned_cols=130 Identities=16% Similarity=0.150 Sum_probs=75.5
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhc--CCEEEEEEecCC-CccCcccc
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE--GVRVLLLVWDDK-TSHDKLGV 317 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~r--GV~VrILvwD~~-gs~~~~~~ 317 (628)
.++|+.+...|.+|++.|+|+.--+ -. - .+.+.+.|..+-+. -.+|.||+ |.. |....+..
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasLYl------G~-~--------E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~ 101 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASLYL------GK-L--------ERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNS 101 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeeecc------ch-h--------HHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCccc
Confidence 6899999999999999999986533 21 1 26788888887754 79999997 886 22221110
Q ss_pred cCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhc-cc---cccccCcceEEEEecCCCCCCcceEEEEccccC
Q 006854 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-IV---GTIFTHHQKCVLVDTQASGNNRKITAFIGGIDL 393 (628)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~-~~---~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni 393 (628)
... . .-..-.+++ ...|.+.+.. ....+.+.+.+ +. ....-.|-|+.-+|++ ..+-|.|+
T Consensus 102 ~s~-l--lp~~l~kkf--~e~vd~~lyh--tp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanl 165 (469)
T KOG3964|consen 102 CSA-L--LPVWLGKKF--PERVDESLYH--TPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANL 165 (469)
T ss_pred chh-h--chHHHhhhh--hhhhceeeec--ChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccc
Confidence 000 0 000011222 2334444311 00001111111 11 1234679999999995 47789999
Q ss_pred CCCCCCCCC
Q 006854 394 CDGRYDTPE 402 (628)
Q Consensus 394 ~~~r~d~~~ 402 (628)
+++|+.+++
T Consensus 166 s~dyfTNRq 174 (469)
T KOG3964|consen 166 SNDYFTNRQ 174 (469)
T ss_pred hhhhhcccc
Confidence 998876553
No 179
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=88.49 E-value=1.3 Score=42.86 Aligned_cols=76 Identities=14% Similarity=0.314 Sum_probs=61.4
Q ss_pred cccCCCCCCcEEEEEECCeeeeeeccccC--CCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccc
Q 006854 73 RKSKIITSDPYVTVVVPQATVARTRVLKN--SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA 148 (628)
Q Consensus 73 ~~~~~~~~dpyv~v~l~~~~~~kT~v~~~--~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~ 148 (628)
|.+.+.....|++|.++++.+.+|+...- ...-.|||.|.+.+...-+.|.++||......+..|+++.+|+-...
T Consensus 30 RR~~~~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 30 RRQRVQKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred hHHHhhheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 44555567899999999988888877665 33456789999999888889999999998866999999999975444
No 180
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=88.34 E-value=2.5 Score=40.99 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=33.8
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcC
Q 006854 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDD 130 (628)
Q Consensus 80 ~dpyv~v~l--~~~~---~~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d 130 (628)
.+-||++.| +... ...|+.+.-+.++.|||.+.|++.-. .+.|.|.||+..
T Consensus 27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 566777754 4322 12555555567899999998875442 567899999854
No 181
>PLN02866 phospholipase D
Probab=88.04 E-value=1 Score=54.35 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 560 ~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
.....++..+|.+||++|||+.=.|-|..+.+.+ +.+ -++..|.+.|.+|+++|++++|++
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp----~~D-~~g~RL~~lL~rKAkrGVkVrVLL 403 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRP----FHD-HESSRLDSLLEAKAKQGVQIYILL 403 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEec----CCC-chHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688999999999999999977555544433211 012 356789999999999999999874
No 182
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=84.54 E-value=3.7 Score=38.82 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=44.7
Q ss_pred CCcEEEEEE--CCe---eeeeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC---CeeeEEEecccccc
Q 006854 80 SDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG---AQIIGTAAIPAHTI 147 (628)
Q Consensus 80 ~dpyv~v~l--~~~---~~~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~---~~~iG~~~i~l~~l 147 (628)
.+-||++.+ +.. ....|+....+.++.|||...|++.-. .+.|.|+||+.+..+ +..||.+.++|=+.
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 566777754 332 122344333347899999988875432 567899999865443 57899998887543
No 183
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=83.89 E-value=4 Score=39.77 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=34.0
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC----CeeeEEEeccccc
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG----AQIIGTAAIPAHT 146 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~----~~~iG~~~i~l~~ 146 (628)
..+.|.|...+.+|.|+|+|.+.++.. ...|.|++++...-. ...+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 446888888999999999999999886 456899999865433 2688888888765
No 184
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=83.34 E-value=3.2 Score=39.71 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=48.9
Q ss_pred CCCcEEEEEE--CCee---eeeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccc
Q 006854 79 TSDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHT 146 (628)
Q Consensus 79 ~~dpyv~v~l--~~~~---~~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~ 146 (628)
.+|-||++.+ ++.. .-.|+.+.-+..+.|||-..|++.-. .+.|.|+||+.+..+ ...+|.+.++|-+
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 3788998876 3321 12566666677889999988886553 567999999987654 6789988888754
No 185
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=82.83 E-value=11 Score=33.77 Aligned_cols=94 Identities=11% Similarity=0.147 Sum_probs=51.8
Q ss_pred EEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC--------CceEEEEEEEcCCCCCeeeEEEeccccccccC--ce
Q 006854 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG--EL 152 (628)
Q Consensus 83 yv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~--------~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~--~~ 152 (628)
||.+.+-.-....|.++. ..+|.+|-+-.+.|.-. ...+.++++..-......+|.+.+++..+... +.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 566666554445666665 88999998777776654 46789999886633368999999999988833 34
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEe
Q 006854 153 ISRWYDIIAPSGSPPKPGASIQLELKFT 180 (628)
Q Consensus 153 ~~~w~~L~~~~~~~~~~~g~i~l~l~y~ 180 (628)
+..-..|.+..++ .-|.|...++..
T Consensus 81 i~~~~~l~g~~~~---~~g~l~y~~rl~ 105 (107)
T PF11618_consen 81 IHGSATLVGVSGE---DFGTLEYWIRLR 105 (107)
T ss_dssp EEEEEEE-BSSS----TSEEEEEEEEEE
T ss_pred EEEEEEEeccCCC---eEEEEEEEEEec
Confidence 6667777666555 568888888743
No 186
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=80.41 E-value=5.2 Score=41.97 Aligned_cols=127 Identities=18% Similarity=0.184 Sum_probs=79.5
Q ss_pred CCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEE
Q 006854 7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV 86 (628)
Q Consensus 7 ~~~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v 86 (628)
.+-+++.-..|.|.+.++++|+|.-.... -|- +.+-||.+
T Consensus 41 ~d~l~~~s~tGiL~~H~~~GRGLr~~p~~---------------------------kgl-------------t~~~ycVl 80 (442)
T KOG1452|consen 41 LDHLRLVSSTGILYFHAYNGRGLRMTPQQ---------------------------KGL-------------TVCFYCVL 80 (442)
T ss_pred cceeeeecccceEEEEEecccccccChhc---------------------------cCc-------------eeeeeeee
Confidence 34456777889999999999999743210 011 37899999
Q ss_pred EECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854 87 VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (628)
Q Consensus 87 ~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~ 165 (628)
..+.+-..||.+......-.|.|+|.+.+-. ...+.+-|+.|+... +++.-...+.+..+.... -++-+.|.
T Consensus 81 e~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RHKLC~~g~l~~~~v~rqs-pd~~~Al~----- 153 (442)
T KOG1452|consen 81 EPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRHKLCHLGLLEAFVVDRQS-PDRVVALY----- 153 (442)
T ss_pred eecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhhccccccchhhhhhhhhcC-Ccceeeee-----
Confidence 9887665677777777777899999988764 345677788777654 544333334444333221 12223331
Q ss_pred CCCCCceEEEEEEEee
Q 006854 166 PPKPGASIQLELKFTP 181 (628)
Q Consensus 166 ~~~~~g~i~l~l~y~p 181 (628)
..+.|++-+.|.+..
T Consensus 154 -lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 154 -LEPRGQPPLRLPLAD 168 (442)
T ss_pred -cccCCCCceecccCC
Confidence 134477777777654
No 187
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=79.62 E-value=4.3 Score=40.01 Aligned_cols=54 Identities=22% Similarity=0.430 Sum_probs=40.3
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC---CeeeEEEeccc
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPA 144 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~---~~~iG~~~i~l 144 (628)
...++|.|...+.+|.|+|++.+.++.. ...|.|++++..... ...+|-+.+||
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 3457999999999999999999998885 556888887754332 25566666665
No 188
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=79.21 E-value=13 Score=34.46 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=44.8
Q ss_pred CcEEEEEE--CC----eeeeeeccccCC-CCCeEeeEEEEEecC----CCceEEEEEEEcCCCC-C----eeeEEEeccc
Q 006854 81 DPYVTVVV--PQ----ATVARTRVLKNS-QEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-A----QIIGTAAIPA 144 (628)
Q Consensus 81 dpyv~v~l--~~----~~~~kT~v~~~~-~~P~wne~f~~~~~~----~~~~l~i~v~d~d~~~-~----~~iG~~~i~l 144 (628)
+.||.+.+ ++ .....|+...-+ .++.|||...|++.- ..+.|.|+||..+... . ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 34566654 33 223366666666 899999998888543 2667999999877665 3 6899999887
Q ss_pred ccc
Q 006854 145 HTI 147 (628)
Q Consensus 145 ~~l 147 (628)
-+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 654
No 189
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=78.30 E-value=6.6 Score=38.85 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=42.1
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-----CeeeEEEecccc
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-----~~~iG~~~i~l~ 145 (628)
...++|.|.....+|.|+|++.+.++.. ...|.|++++..... ...+|-+.+||-
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4457999999999999999999998875 567889987754321 256777777764
No 190
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=75.77 E-value=18 Score=35.30 Aligned_cols=101 Identities=12% Similarity=0.103 Sum_probs=53.1
Q ss_pred CcEEEEEE--CCee--eeeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC--CeeeEEEeccccccccC
Q 006854 81 DPYVTVVV--PQAT--VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG--AQIIGTAAIPAHTIATG 150 (628)
Q Consensus 81 dpyv~v~l--~~~~--~~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~--~~~iG~~~i~l~~l~~~ 150 (628)
.-||++.| +... ..+|+.+..+.++.|||-..|++.-. .+.|.|+||+...-+ ....|.. +.+.-...
T Consensus 31 ~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~ 108 (178)
T cd08399 31 TVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAES--PSSESKGK 108 (178)
T ss_pred EEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccc--cccccccc
Confidence 35666643 3311 12566666677899999888875542 567899999863221 1222221 11111111
Q ss_pred ceeEEEEE--ccCCCCCCCCCCceEEEEEEEeecCCC
Q 006854 151 ELISRWYD--IIAPSGSPPKPGASIQLELKFTPCDKN 185 (628)
Q Consensus 151 ~~~~~w~~--L~~~~~~~~~~~g~i~l~l~y~p~~~~ 185 (628)
...-.|.. |++..+. =..|+..|.+.-.|...+
T Consensus 109 ~~~l~wvn~~LFD~~~~--Lr~G~~~L~~W~~~~~~~ 143 (178)
T cd08399 109 HQLLYYVNLLLIDHRFL--LRTGEYVLHMWQISGKGE 143 (178)
T ss_pred cceEEEEEEEEEcCCCc--eecCCEEEEEecCCCccc
Confidence 22234433 4444432 235888888887664443
No 191
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=72.13 E-value=17 Score=35.67 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=33.3
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDD 130 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d 130 (628)
.....|.|...+.+|.|+|++-+.++.. ...|.|+.++..
T Consensus 55 ~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 55 TTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred ceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 4457899999999999999999998875 456889998865
No 192
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=67.31 E-value=17 Score=35.07 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=40.2
Q ss_pred CCcEEEEEE--CCeee---eeecccc----CCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC----------Cee
Q 006854 80 SDPYVTVVV--PQATV---ARTRVLK----NSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG----------AQI 136 (628)
Q Consensus 80 ~dpyv~v~l--~~~~~---~kT~v~~----~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~----------~~~ 136 (628)
.|-||++.+ +.... ..|+... -...+.|||-..|++.-. .+.|.|++|+..... +..
T Consensus 29 ~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~ 108 (171)
T cd04012 29 EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEE 108 (171)
T ss_pred ccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceE
Confidence 667888765 33221 1333221 134678999988875432 567899999865432 356
Q ss_pred eEEEeccccc
Q 006854 137 IGTAAIPAHT 146 (628)
Q Consensus 137 iG~~~i~l~~ 146 (628)
||.+.++|-+
T Consensus 109 lG~~~~~LFd 118 (171)
T cd04012 109 LGWVSLPLFD 118 (171)
T ss_pred EEEEeEeeEc
Confidence 7777666543
No 193
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=65.11 E-value=14 Score=36.03 Aligned_cols=54 Identities=20% Similarity=0.168 Sum_probs=39.2
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-------CeeeEEEecccc
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-------AQIIGTAAIPAH 145 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-------~~~iG~~~i~l~ 145 (628)
....|.|...+.+|.|+|++-+.++.. ...|.|+.++.+... ...+|-+.+||-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 456899999999999999999998876 456888888854322 234555555543
No 194
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=60.00 E-value=61 Score=28.23 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=32.6
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEc
Q 006854 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDD 129 (628)
Q Consensus 80 ~dpyv~v~l--~~~~---~~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~ 129 (628)
++-||++.+ ++.. ...|+.+.-+..+.|||-..|++.-. ...|.|++|+.
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 467888865 3321 12455544466799999988875442 56789999974
No 195
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=59.67 E-value=20 Score=34.75 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=36.5
Q ss_pred eeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC------CeeeEEEeccccc
Q 006854 94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG------AQIIGTAAIPAHT 146 (628)
Q Consensus 94 ~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~------~~~iG~~~i~l~~ 146 (628)
++|-+..+ .+|.|+|+|.+.++.. ...|.|++++..... ...+|-+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 9999999999998764 456899998865322 4677777777654
No 196
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=55.39 E-value=19 Score=39.20 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEEe
Q 006854 561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRC 627 (628)
Q Consensus 561 ~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~~ 627 (628)
..++.+.+.|.+||++|+|.+=|.-..+ .||++-|..|..+...+||-|++
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~~E----------------~elv~cl~~aL~~~~~L~v~iLl 89 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGKLE----------------RELVDCLSNALEKNPSLKVSILL 89 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccchhH----------------HHHHHHHHHHhccCCCcEEEeeh
Confidence 4789999999999999999999986543 49999999999999999998875
No 197
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=50.37 E-value=52 Score=39.43 Aligned_cols=203 Identities=17% Similarity=0.230 Sum_probs=107.8
Q ss_pred eeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (628)
Q Consensus 11 ~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~ 90 (628)
...+.-|.+++.+++|..|..- ...||...+..
T Consensus 753 eSpl~ygflh~~vhsat~lkqs-----------------------------------------------~~lY~Td~v~e 785 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQS-----------------------------------------------RNLYCTDEVDE 785 (1112)
T ss_pred cCcccccceeeeeccccccccc-----------------------------------------------cceeeehhhhh
Confidence 3566778899999999888631 44566665532
Q ss_pred ----eeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcC----------CCC-CeeeEEEeccccccccCceeEE
Q 006854 91 ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD----------VFG-AQIIGTAAIPAHTIATGELISR 155 (628)
Q Consensus 91 ----~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d----------~~~-~~~iG~~~i~l~~l~~~~~~~~ 155 (628)
....+|+++.++..|.||++|.+++-.. +...+..++++ .+. +...|...+.+.-.. -....
T Consensus 786 ~~~~~s~~st~~iadT~~~~~npe~hv~~~~s-qS~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~--~~d~d 862 (1112)
T KOG4269|consen 786 FGYFVSKASTRVIADTAEPQWNPEKHVPVIES-QSSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQP--HHDAD 862 (1112)
T ss_pred hccccccccceeeecccCCCCChhcccchhhc-cccchhhhcccchHHHhhhccchhhcccccccccccCccc--ccccc
Confidence 4457999999999999999999987653 22233333332 111 345555555443211 11234
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEeecCCCCccccccCCCCCCCCccCccccCCCCCceeEeecccccCCCCCceecCCC
Q 006854 156 WYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGG 235 (628)
Q Consensus 156 w~~L~~~~~~~~~~~g~i~l~l~y~p~~~~~~~~~gv~~~p~~~~~~~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g 235 (628)
|+.-...-. .-.+...+.|.+......- . | .-.+.+.|+...+-++.+.+--+ +.|
T Consensus 863 ~~t~v~~~n-----~~~ve~~v~~ssss~Ss~~-----~-~--~~~qTgIFG~~~~~kisv~t~~n-----------~s~ 918 (1112)
T KOG4269|consen 863 WYTQVIDMN-----GIVVETSVKFSSSSTSSKR-----K-P--SVKQTGIFGLPLNVKISVVTKRN-----------VSG 918 (1112)
T ss_pred CccChhhhc-----CcceeeeEEeccccccccC-----C-C--cceeceeccccceeeEeeeeeec-----------ccC
Confidence 654322221 2346666666664322110 0 0 01112223333333444433211 122
Q ss_pred CccCCcchHHHHHHHHHhcc--ceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCC
Q 006854 236 KLYKPGTCWEDICHAISEAH--HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309 (628)
Q Consensus 236 ~~y~~~~~f~~l~~aI~~Ak--~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~ 309 (628)
-+| .....+|-++..| ++. --|.+ .| ..+..++|+++-..||.=-|++-|.-
T Consensus 919 lP~----VVyrCvEyle~~RgieEe--GIyRl---------------SG-saT~Ik~Lke~Fd~~~n~di~~~d~E 972 (1112)
T KOG4269|consen 919 LPY----VVYRCVEYLESCRGIEEE--GIYRL---------------SG-SATDIKALKEQFDENVNKDILSMDSE 972 (1112)
T ss_pred Cch----HHHHHHHHHHhccccchh--ceEEe---------------cc-cHHHHHHHHHHhccccCchhhhcccc
Confidence 233 3445555555433 221 11222 12 46889999999999988777775554
No 198
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=48.63 E-value=22 Score=39.19 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=36.4
Q ss_pred eeEEEeccccc-cccCceeEEEEEccCCCCCCCCCCceEEEEEEEeecCCCC
Q 006854 136 IIGTAAIPAHT-IATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186 (628)
Q Consensus 136 ~iG~~~i~l~~-l~~~~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p~~~~~ 186 (628)
.+|.+.||++. +..+...+.||++.+...+. ...|.+ ++++|....-.|
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~-~~~~~l-lk~~~~~~~VLp 50 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS-VGEGLI-IKVSSEENFVLP 50 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC-cCcceE-EEEEeeeceecc
Confidence 48999999999 66777889999998765543 344666 788887754333
No 199
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=48.50 E-value=21 Score=40.52 Aligned_cols=85 Identities=22% Similarity=0.336 Sum_probs=57.7
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCC----C-CeeeEEEeccccccccCceeEEEEEccCCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVF----G-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~----~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~ 164 (628)
....+|.++.+..||.|-+.|.+...-+ .+.|.+++++.+.. . .+|+|++...+.++........-+-+ .+ +
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~-~~-~ 117 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLL-KP-G 117 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhc-cc-C
Confidence 3456999999999999999988876655 45689999987654 2 69999999999888744322222222 11 1
Q ss_pred CCCCCCceEEEEEE
Q 006854 165 SPPKPGASIQLELK 178 (628)
Q Consensus 165 ~~~~~~g~i~l~l~ 178 (628)
.....|.|.+++.
T Consensus 118 -~~~~~g~iti~ae 130 (529)
T KOG1327|consen 118 -KNAGSGTITISAE 130 (529)
T ss_pred -ccCCcccEEEEee
Confidence 1123466666665
No 200
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=46.07 E-value=76 Score=34.23 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=72.5
Q ss_pred cchHHHHHHHHHhccc----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccc
Q 006854 241 GTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~ 316 (628)
..+.+-+-+.|++|+. .|.+- -..|. ...+.++|-+|.+.||+|.+++ .+.-+. .++
T Consensus 182 ~~~~~lI~~Ei~~a~~G~~a~I~~K------~NsL~-----------D~~iI~~Ly~AS~AGV~I~LiV-RGiCcL-~Pg 242 (352)
T PF13090_consen 182 KKLLELIDREIENAKAGKPARIIAK------MNSLT-----------DPEIIDKLYEASQAGVKIDLIV-RGICCL-RPG 242 (352)
T ss_dssp HHHHHHHHHHHHHHCTTS-EEEEEE------ES-B-------------HHHHHHHHHHHHTTEEEEEEE-SS-B-C--TT
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEE------ecCCC-----------CHHHHHHHHHHHhCCCEEEEEE-eccccc-CCC
Confidence 4566666667777653 34332 11222 2589999999999999999998 666332 121
Q ss_pred ccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (628)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~ 396 (628)
.. |+ ..+|++. ..-++ ||+ |-.+...-.. +....|+|+.|+-..
T Consensus 243 i~--g~-------------SeNI~V~---SIVgR---fLE----------HsRi~~F~n~-----g~~~~yisSADwM~R 286 (352)
T PF13090_consen 243 IP--GL-------------SENIRVI---SIVGR---FLE----------HSRIYYFGNG-----GDEEVYISSADWMTR 286 (352)
T ss_dssp SC--TC-------------CTTEEEE---EE-SS---SEE------------EEEEE-GC-----CS-EEEEESS-BSHH
T ss_pred CC--CC-------------CCCEEEE---Eeccc---ccc----------hhheeeecCC-----CCCeEEEEccccccC
Confidence 11 11 2456665 22222 332 6666666332 224889999987772
Q ss_pred CCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHH-HHHHHHHHHHhhhcc
Q 006854 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY-DVLINFEQRWRKATK 461 (628)
Q Consensus 397 r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~-~l~~~F~~rW~~~~~ 461 (628)
-.+ .-..+.+-|.-|..+ .+...+...|.+..+
T Consensus 287 Nl~--------------------------------rRVEv~~PI~D~~lk~~l~~il~~~l~Dn~k 320 (352)
T PF13090_consen 287 NLD--------------------------------RRVEVAFPIYDPRLKKELKDILDLQLKDNVK 320 (352)
T ss_dssp HHH--------------------------------TCEEEEEE--SHHHHHHHHHHHHHCCCTTCS
T ss_pred CCC--------------------------------eeEEEEeEECCHHHHHHHHHHHHHhCCcCcc
Confidence 111 125888889998554 555666666765443
No 201
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.14 E-value=9.9 Score=44.02 Aligned_cols=96 Identities=14% Similarity=0.027 Sum_probs=62.5
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccC-ceeEEEE
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWY 157 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~-~~~~~w~ 157 (628)
.+||+.|.+.-.....+.+.+.+..|.|+|+|.+.+.. ...+.|.|+...... +.+...+.+-.+++... .....|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 78999999876555567778889999999999999554 556778888765443 33333333433333321 2334577
Q ss_pred EccCCCCCCCCCCceEEEEEEEeecCC
Q 006854 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (628)
Q Consensus 158 ~L~~~~~~~~~~~g~i~l~l~y~p~~~ 184 (628)
.+ .+ .|++...+.+.-+..
T Consensus 107 ~~-~~-------~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 107 LI-EE-------LGTLLKPAALTGTLE 125 (694)
T ss_pred cc-cc-------ccceeeeecccCcCC
Confidence 75 33 377777777666444
No 202
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=37.94 E-value=3.5e+02 Score=29.26 Aligned_cols=94 Identities=11% Similarity=0.178 Sum_probs=62.6
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCC--eEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccc-c-ccCceeEE
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEP--VWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHT-I-ATGELISR 155 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P--~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~-l-~~~~~~~~ 155 (628)
...|+.+..+... .+|..+..+..- .-.+...+.+.--...|++.++.....+..-||.+.+.+.. + ...-+..+
T Consensus 74 khiyIef~~Gr~d-~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnk 152 (508)
T PTZ00447 74 KHIYIIFSTDKYD-FTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNE 152 (508)
T ss_pred eeEEEEEEcCceE-EEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccc
Confidence 4568888877644 344333332222 33456666666667789999999888888899999998853 2 23446789
Q ss_pred EEEccCCCCCCCCCCceEEEEEE
Q 006854 156 WYDIIAPSGSPPKPGASIQLELK 178 (628)
Q Consensus 156 w~~L~~~~~~~~~~~g~i~l~l~ 178 (628)
||-| ...|+ ..+.|.||+.
T Consensus 153 Wy~c-~kDGq---~~cRIqLSFh 171 (508)
T PTZ00447 153 WFVC-FKDGQ---EICKVQMSFY 171 (508)
T ss_pred eEEE-ecCCc---eeeeEEEEeh
Confidence 9999 45554 3477777765
No 203
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=31.16 E-value=5.4e+02 Score=28.62 Aligned_cols=61 Identities=21% Similarity=0.418 Sum_probs=39.4
Q ss_pred ceEEEEEEEcCC-------CCCeeeEEEeccccccc--cCc---eeEEEEEccCCCCC-CCCCCceEEEEEEEee
Q 006854 120 SNLEIQVKDDDV-------FGAQIIGTAAIPAHTIA--TGE---LISRWYDIIAPSGS-PPKPGASIQLELKFTP 181 (628)
Q Consensus 120 ~~l~i~v~d~d~-------~~~~~iG~~~i~l~~l~--~~~---~~~~w~~L~~~~~~-~~~~~g~i~l~l~y~p 181 (628)
..|+|.||.-.. .+.++||.+.|+|. +. .+. ...+|..|-..... ......+|+|.++--|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 468999997432 23689999999987 33 222 34689999333221 2234678999888544
No 204
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=27.17 E-value=4.7e+02 Score=23.58 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=39.8
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeE-eeEEEEEecCC---CceEEEEEEEcC--CCCCeeeEEEeccccccc
Q 006854 80 SDPYVTVVVPQATVARTRVLKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDD--VFGAQIIGTAAIPAHTIA 148 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~w-ne~f~~~~~~~---~~~l~i~v~d~d--~~~~~~iG~~~i~l~~l~ 148 (628)
+.||++|.-....+..|...... .... ...+.+.+... ...+.|++++.. ....+.+..+.+.-.-+.
T Consensus 25 c~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 25 CRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCCEEEEEEEEEGGGSB
T ss_pred EEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccccCeEEEEEEeeeeee
Confidence 88999999877665433332221 1111 12233333321 346788999876 344778888888766555
No 205
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=24.29 E-value=4.5e+02 Score=23.03 Aligned_cols=78 Identities=9% Similarity=0.159 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHhcc-ceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCC---CccCccc
Q 006854 241 GTCWEDICHAISEAH-HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK---TSHDKLG 316 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak-~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~---gs~~~~~ 316 (628)
.+.|..+.+.+++.. ..|++. |. . . ..++.+++.+.+++|++--+|+ ... |.+.
T Consensus 15 ~~~~~~l~~~l~~~~~~~v~~~-~l--------E-~--------~P~i~~~l~~l~~~G~~~i~lv-Pl~L~~G~H~--- 72 (103)
T cd03413 15 NAVYAALEYVLREEDPANVFVG-TV--------E-G--------YPGLDDVLAKLKKAGIKKVTLM-PLMLVAGDHA--- 72 (103)
T ss_pred hhHHHHHHHHHHhcCCCcEEEE-EE--------c-C--------CCCHHHHHHHHHHcCCCEEEEE-ehhheecccc---
Confidence 356777777776543 445543 21 1 1 2579999999999999854443 332 2221
Q ss_pred ccCCCcccCChHHHHhhhccCCceEE
Q 006854 317 VKTPGVMATHDEETKKFFKHSSVNCV 342 (628)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gv~~~ 342 (628)
.........+.++..|+.+|++|.
T Consensus 73 --~~Dipge~~~SW~~~l~~~g~~v~ 96 (103)
T cd03413 73 --HNDMAGDEPDSWKSILEAAGIKVE 96 (103)
T ss_pred --hhcCCCCCchhHHHHHHHCCCeeE
Confidence 111222334678889999999986
No 206
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=24.28 E-value=3.2e+02 Score=25.21 Aligned_cols=74 Identities=15% Similarity=0.066 Sum_probs=42.5
Q ss_pred eecCCCCccCCcchHHHHHHHHHhcc-ceEEEEEEEEecccceeccCCCCCCCC-CCCcHHHHHHHHhhcCCEEEEEE
Q 006854 230 IPLDGGKLYKPGTCWEDICHAISEAH-HLIYIVGWSVFHKIKLIREQTRPLPRG-GDLTLGELLKYKSEEGVRVLLLV 305 (628)
Q Consensus 230 ~~l~~g~~y~~~~~f~~l~~aI~~Ak-~sI~i~~w~f~~~~~l~r~~~~~~~~g-~~~~l~~~L~~aA~rGV~VrILv 305 (628)
+.++.||+|-.+.+|.++.=|...=+ ..+.+.-|.+...+..- .....|.. ...-+.+.+.-.++.||.|++=+
T Consensus 4 ~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly~DgV~~~--~~~~~Pa~dEf~l~~~~~~l~~~~gv~v~~C~ 79 (126)
T COG1553 4 TIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLYQDGVHNG--NKGQKPASDEFNLIQAWLELLTEQGVPVKLCV 79 (126)
T ss_pred EEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEeecccccc--ccCCCCcccccchHHHHHHHHHHcCCcEeeeH
Confidence 45677889987777777655544422 24555555554443321 11112221 02456677777888999999875
No 207
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=23.83 E-value=1.3e+02 Score=33.80 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=37.4
Q ss_pred CcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhhccCCceEEe
Q 006854 285 LTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL 343 (628)
Q Consensus 285 ~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~ 343 (628)
..+-.+|.+|-+.|.+.|++|.|..... ..+...+.|.+.||+|.+
T Consensus 370 ~vV~~ill~A~~~~k~frVvVVDSRP~~-------------EG~~~lr~Lv~~GinctY 415 (556)
T KOG1467|consen 370 SVVNMILLEAKELGKKFRVVVVDSRPNL-------------EGRKLLRRLVDRGINCTY 415 (556)
T ss_pred HHHHHHHHHHHHhCcceEEEEEeCCCCc-------------chHHHHHHHHHcCCCeEE
Confidence 5688889999999999999998887322 146788899999999973
No 208
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=22.57 E-value=2.2e+02 Score=25.32 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=39.6
Q ss_pred ceEEEEEEEcCC---CC-CeeeEEEeccccccc--------------cCceeEEEEEccCCCCCCCCCCceEEEEEEEee
Q 006854 120 SNLEIQVKDDDV---FG-AQIIGTAAIPAHTIA--------------TGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (628)
Q Consensus 120 ~~l~i~v~d~d~---~~-~~~iG~~~i~l~~l~--------------~~~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p 181 (628)
..|++.++.-.. .. ...||++.+++.+.. ......+-|+|.++.+. ..|+|.|.++..-
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~---~~G~I~l~iRLsc 105 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGN---PVGEISLYIRLSC 105 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCc---eeeeEEEEEEEec
Confidence 456776665332 23 679999999987654 11245578999877665 4599888887553
No 209
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.68 E-value=2e+02 Score=30.32 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHH-HcCCceEEEEEe
Q 006854 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKI-RANERFAVARRC 627 (628)
Q Consensus 560 ~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~-~~~~~~~v~i~~ 627 (628)
.+|.+...++|++|++-|=|..-=|... +|..-|..|+ ++++ -|||++
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~------------------dIf~DLleAa~kR~V--pVYiLL 181 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDV------------------DIFCDLLEAANKRGV--PVYILL 181 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccH------------------HHHHHHHHHHHhcCC--cEEEEe
Confidence 5799999999999999999999888665 5888899988 6665 677765
Done!