Query 006854
Match_columns 628
No_of_seqs 310 out of 2892
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:43:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 99.9 2.8E-27 9.5E-32 264.1 19.8 158 241-461 65-225 (506)
2 3hsi_A Phosphatidylserine synt 99.9 6.4E-25 2.2E-29 241.3 14.9 264 209-625 24-305 (458)
3 2fk9_A Protein kinase C, ETA t 99.8 3.8E-19 1.3E-23 168.1 13.1 130 10-180 22-156 (157)
4 2dmh_A Myoferlin; beta-sandwic 99.8 1.2E-18 4E-23 160.5 16.1 125 15-185 5-137 (140)
5 3b7y_A E3 ubiquitin-protein li 99.8 1.4E-18 4.6E-23 162.7 15.3 124 15-181 18-153 (153)
6 1wfj_A Putative elicitor-respo 99.8 8.9E-19 3.1E-23 160.5 12.8 124 14-184 7-133 (136)
7 2ep6_A MCTP2 protein; beta san 99.8 2E-18 6.9E-23 157.8 14.4 129 7-181 3-132 (133)
8 3kwu_A MUNC13-1; calcium bindi 99.8 1.1E-17 3.6E-22 155.7 19.1 124 12-181 12-147 (148)
9 1gmi_A Protein kinase C, epsil 99.8 3.2E-18 1.1E-22 157.3 14.3 130 13-182 2-134 (136)
10 3m7f_B E3 ubiquitin-protein li 99.8 8.3E-18 2.8E-22 161.4 16.2 124 16-182 7-142 (176)
11 1rlw_A Phospholipase A2, CALB 99.7 8E-18 2.7E-22 152.0 13.5 118 16-181 2-125 (126)
12 4ggj_A Mitochondrial cardiolip 99.7 1.8E-18 6E-23 169.5 9.4 136 241-462 45-180 (196)
13 1xdp_A Polyphosphate kinase; P 99.7 1.6E-17 5.5E-22 189.5 18.1 204 241-625 346-562 (687)
14 2o8r_A Polyphosphate kinase; s 99.7 1.7E-16 5.7E-21 180.1 21.0 207 241-625 351-569 (705)
15 3pyc_A E3 ubiquitin-protein li 99.7 1.2E-16 4E-21 145.8 15.7 120 17-179 5-131 (132)
16 2nq3_A Itchy homolog E3 ubiqui 99.7 5.2E-17 1.8E-21 155.9 13.9 133 9-186 28-166 (173)
17 2b3r_A Phosphatidylinositol-4- 99.7 1.1E-16 3.6E-21 146.9 14.2 115 3-160 6-129 (134)
18 2r83_A Synaptotagmin-1; C2A-C2 99.7 7.8E-16 2.7E-20 158.2 17.6 127 15-183 17-149 (284)
19 1rsy_A Synaptotagmin I; calciu 99.7 4.1E-16 1.4E-20 145.9 13.4 105 15-161 40-150 (152)
20 1a25_A CALB, protein kinase C 99.7 4.6E-16 1.6E-20 145.0 13.6 108 11-161 25-139 (149)
21 3rdl_A Protein kinase C alpha 99.7 5.5E-16 1.9E-20 141.8 13.3 110 10-162 9-125 (137)
22 1rh8_A Piccolo protein; beta-s 99.7 1.7E-16 5.7E-21 146.4 9.7 110 10-161 11-138 (142)
23 2q3x_A Regulating synaptic mem 99.7 4.7E-16 1.6E-20 148.7 13.1 110 11-162 24-140 (171)
24 3f04_A Synaptotagmin-1; C2A, c 99.7 4.9E-16 1.7E-20 143.5 11.6 104 15-160 32-141 (143)
25 3fdw_A Synaptotagmin-like prot 99.6 3E-16 1E-20 146.0 9.7 106 16-163 22-136 (148)
26 2d8k_A Synaptotagmin VII; exoc 99.6 1.3E-15 4.6E-20 140.4 13.3 105 15-161 24-135 (141)
27 2z0u_A WW domain-containing pr 99.6 2.4E-16 8.4E-21 148.5 8.4 104 15-160 41-154 (155)
28 1byr_A Protein (endonuclease); 99.6 7E-16 2.4E-20 144.2 11.1 136 241-461 13-150 (155)
29 2chd_A Rabphilin-3A, exophilin 99.6 2E-15 7E-20 139.2 12.7 104 15-160 27-139 (142)
30 4gel_A Mitochondrial cardiolip 99.6 2.1E-16 7.2E-21 156.9 5.9 152 241-462 57-212 (220)
31 2bwq_A Regulating synaptic mem 99.6 2E-15 7E-20 136.6 12.0 102 15-159 16-128 (129)
32 3fbk_A RGS3, RGP3, regulator o 99.6 3.2E-15 1.1E-19 140.1 13.3 109 11-162 21-138 (153)
33 1ugk_A Synaptotagmin IV, KIAA1 99.6 7.4E-15 2.5E-19 134.8 13.4 105 15-161 20-133 (138)
34 1wfm_A Synaptotagmin XIII; C2 99.6 4E-15 1.4E-19 137.0 11.6 82 80-161 44-132 (138)
35 3n5a_A Synaptotagmin-7; calciu 99.6 7.8E-15 2.7E-19 134.1 12.8 105 15-163 14-126 (138)
36 1v27_A Regulating synaptic mem 99.6 3.3E-15 1.1E-19 137.2 10.4 104 16-162 20-134 (141)
37 1tjx_A Similar to synaptotagmi 99.6 9.8E-15 3.4E-19 137.4 13.4 104 15-160 23-146 (159)
38 1w15_A Synaptotagmin IV; metal 99.6 1.3E-15 4.6E-20 142.3 7.0 104 15-162 28-139 (153)
39 2dmg_A KIAA1228 protein; beta- 99.6 6.7E-15 2.3E-19 135.7 11.1 104 16-162 23-136 (142)
40 2cm5_A Rabphilin-3A; protein t 99.6 1.4E-14 4.8E-19 137.4 13.4 91 15-147 35-133 (166)
41 2enp_A B/K protein; C2 type 1, 99.6 2.7E-15 9.3E-20 139.3 8.2 110 15-160 24-140 (147)
42 1dqv_A Synaptotagmin III; beta 99.5 3.9E-14 1.3E-18 146.9 14.7 125 15-182 18-150 (296)
43 3l9b_A Otoferlin; C2-domain, b 99.5 1E-13 3.5E-18 127.1 13.0 102 80-184 37-143 (144)
44 2cjt_A UNC-13 homolog A, MUNC1 99.5 1.2E-13 4.2E-18 126.2 13.5 96 80-179 23-130 (131)
45 3jzy_A Intersectin 2; C2 domai 99.5 3.8E-13 1.3E-17 149.5 15.1 117 15-180 385-507 (510)
46 2cjs_A UNC-13 homolog A, MUNC1 99.4 7.2E-13 2.5E-17 126.3 12.5 66 80-149 32-99 (167)
47 3nsj_A Perforin-1; pore formin 99.4 1.7E-12 5.8E-17 144.9 15.2 106 16-178 393-501 (540)
48 1djx_A PLC-D1, phosphoinositid 99.4 2.2E-12 7.7E-17 146.7 15.0 120 15-180 495-623 (624)
49 3bxj_A RAS GTPase-activating p 99.4 3.8E-14 1.3E-18 157.0 0.4 125 15-186 9-162 (483)
50 2r83_A Synaptotagmin-1; C2A-C2 99.4 2.4E-12 8.1E-17 132.2 12.8 104 15-160 148-271 (284)
51 1cjy_A CPLA2, protein (cytosol 99.3 3E-12 1E-16 147.3 12.1 103 15-159 16-124 (749)
52 1dqv_A Synaptotagmin III; beta 99.3 1.7E-12 5.7E-17 134.6 5.0 108 16-166 151-266 (296)
53 3pfq_A PKC-B, PKC-beta, protei 99.1 1.9E-10 6.6E-15 132.3 12.9 109 12-163 167-282 (674)
54 3ohm_B 1-phosphatidylinositol- 98.9 2.8E-09 9.6E-14 124.6 12.1 95 80-181 742-845 (885)
55 2zkm_X 1-phosphatidylinositol- 98.9 3.6E-09 1.2E-13 123.4 12.8 113 15-180 676-798 (799)
56 3qr0_A Phospholipase C-beta (P 98.9 4.7E-09 1.6E-13 122.0 13.3 113 16-181 649-771 (816)
57 3hsi_A Phosphatidylserine synt 98.9 3.1E-09 1.1E-13 116.6 9.1 150 241-462 257-422 (458)
58 1v0w_A Phospholipase D; hydrol 98.8 4.7E-08 1.6E-12 108.7 16.2 159 242-461 314-493 (506)
59 1yrk_A NPKC-delta, protein kin 98.8 1.1E-07 3.9E-12 84.7 14.1 89 80-180 27-124 (126)
60 2enj_A NPKC-theta, protein kin 98.7 9.2E-08 3.1E-12 86.4 11.1 90 80-181 32-130 (138)
61 2o8r_A Polyphosphate kinase; s 97.4 0.00026 8.7E-09 80.7 8.4 138 234-462 511-656 (705)
62 1byr_A Protein (endonuclease); 97.2 0.00046 1.6E-08 63.4 6.8 48 560-625 13-60 (155)
63 4ggj_A Mitochondrial cardiolip 97.1 0.00062 2.1E-08 65.9 6.0 47 561-625 46-92 (196)
64 4gel_A Mitochondrial cardiolip 97.0 0.00082 2.8E-08 65.7 6.1 48 560-625 57-104 (220)
65 1xdp_A Polyphosphate kinase; P 96.9 0.001 3.5E-08 76.0 7.3 132 244-462 514-650 (687)
66 3qph_A TRMB, A global transcri 94.6 0.02 6.8E-07 60.2 3.9 48 241-305 118-165 (342)
67 2f5t_X Archaeal transcriptiona 93.1 0.081 2.8E-06 52.5 5.0 50 241-307 9-58 (233)
68 3l4c_A Dedicator of cytokinesi 83.9 9.8 0.00034 37.0 11.8 41 91-131 76-119 (220)
69 2yrb_A Protein fantom; beta sa 83.5 6.5 0.00022 36.2 9.9 98 82-181 44-150 (156)
70 3qph_A TRMB, A global transcri 71.3 4.8 0.00016 41.8 5.9 49 559-625 117-165 (342)
71 2wxf_A Phosphatidylinositol-4, 61.8 29 0.001 40.9 10.5 67 80-146 235-323 (940)
72 3hhm_A Phosphatidylinositol-4, 46.6 79 0.0027 37.8 10.8 67 80-147 375-455 (1091)
73 2c1l_A Restriction endonucleas 37.7 1.1E+02 0.0039 30.2 8.5 80 284-396 50-129 (358)
74 1e7u_A Phosphatidylinositol 3- 34.7 1.1E+02 0.0038 36.1 9.5 67 80-146 238-329 (961)
75 2d1p_A TUSD, hypothetical UPF0 28.8 1.3E+02 0.0043 26.8 6.9 77 225-304 11-90 (140)
76 2l82_A Designed protein OR32; 28.3 69 0.0023 27.4 4.6 44 285-342 90-133 (162)
77 2y3a_A Phosphatidylinositol-4, 25.2 44 0.0015 40.0 4.0 35 95-129 391-429 (1092)
78 1jx7_A Hypothetical protein YC 23.0 1.5E+02 0.0052 24.4 6.1 63 238-305 13-79 (117)
79 3mc3_A DSRE/DSRF-like family p 22.8 1E+02 0.0036 26.8 5.2 66 238-304 27-94 (134)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=99.95 E-value=2.8e-27 Score=264.06 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=112.2
Q ss_pred cchHHHHHHHHHhccceEEEEEEE-EecccceeccCCCCCCCCCCCcHHHHHHHHhhcC--CEEEEEEecCCCccCcccc
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWS-VFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLVWDDKTSHDKLGV 317 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~-f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rG--V~VrILvwD~~gs~~~~~~ 317 (628)
+++|++|+++|++|+++|+|++|+ |.+ +. .| ..|.++|++||+|| |+||||+ |..|+....
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~-------d~----~g--~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~-- 128 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPN-------GA----FQ--DAIVAGLKESAAKGNKLKVRILV-GAAPVYHMN-- 128 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCC-------HH----HH--HHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCC--
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCC-------Ch----HH--HHHHHHHHHHHhCCCCcEEEEEE-eCccccccc--
Confidence 578999999999999999999998 444 21 23 68999999999999 9999996 876543210
Q ss_pred cCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCC
Q 006854 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (628)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r 397 (628)
..+..+.+.|+.+|+++.. ..+.....+. . ......+||||++|||++ +||+||+|+++++
T Consensus 129 -------~~~~~~~~~L~~~g~~~~~--~~~~~~~~~~-~-~~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~ 189 (506)
T 1v0w_A 129 -------VIPSKYRDELTAKLGKAAE--NITLNVASMT-T-SKTAFSWNHSKILVVDGQ--------SALTGGINSWKDD 189 (506)
T ss_dssp -------CHHHHHHHHHHHHHGGGGG--GEEEEEEEEC-S-BTTTTBCBCCCEEEETTT--------EEEEESCCCCHHH
T ss_pred -------cCCHHHHHHHHhcccceee--cCcccccccc-c-cCCccccceeeEEEECCc--------EEEeeccccCccc
Confidence 0134566667765554210 0000000000 0 001224999999999998 9999999997545
Q ss_pred CCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcc
Q 006854 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461 (628)
Q Consensus 398 ~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~ 461 (628)
|.+. ..+|||++++++||+|.+++..|.++|+....
T Consensus 190 y~~~----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~ 225 (506)
T 1v0w_A 190 YLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQ 225 (506)
T ss_dssp HTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred cccC----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhcc
Confidence 5431 13799999999999999999999999987653
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.92 E-value=6.4e-25 Score=241.33 Aligned_cols=264 Identities=11% Similarity=0.046 Sum_probs=168.4
Q ss_pred CCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHH
Q 006854 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (628)
Q Consensus 209 ~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~ 288 (628)
+.+|.++++.+| +++|++++++|++|+++|+|++|+|.+ +. .| ..|.
T Consensus 24 ~~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~-------d~----~g--~~l~ 70 (458)
T 3hsi_A 24 LQAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQK-------DE----AG--QEIL 70 (458)
T ss_dssp CCGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCS-------SH----HH--HHHH
T ss_pred ccCCeEEEEeCH--------------------HHHHHHHHHHHHhcCCEEEEEEEEEec-------Cc----HH--HHHH
Confidence 468899999998 689999999999999999999999865 22 33 6899
Q ss_pred HHHHHHhhc--CCEEEEEEecCC-------CccCcccccCCCcccCChHHHHhhhccCC--ceEE--eccCCCCCccchh
Q 006854 289 ELLKYKSEE--GVRVLLLVWDDK-------TSHDKLGVKTPGVMATHDEETKKFFKHSS--VNCV--LAPRYASSKLSYF 355 (628)
Q Consensus 289 ~~L~~aA~r--GV~VrILvwD~~-------gs~~~~~~~~~~~~~~~~~~~~~~l~~~g--v~~~--~~~~~~~~~~~~~ 355 (628)
++|.+||+| ||+||||+ |.. |+... ..+..+.+.|.++| |++. +.. +|..
T Consensus 71 ~aL~~aa~r~~GV~Vril~-D~~~~~r~~~g~~~~----------~~~~~~~~~L~~~g~nv~v~~~~f~-~p~~----- 133 (458)
T 3hsi_A 71 DEIYRVKQENPHLDVKVLI-DWHRAQRNLLGAEKS----------ATNADWYCEQRQTYQLPDDPNMFFG-VPIN----- 133 (458)
T ss_dssp HHHHHHHHHSTTCEEEEEE-ETTGGGSCCC---------------CCHHHHHHHHHHHHTCTTCCCCEEE-ECSS-----
T ss_pred HHHHHHHhcCCCCEEEEEE-ECccccccccccccc----------cccHHHHHHHHhhCCCceEeeeecC-Cccc-----
Confidence 999999999 99999996 884 33211 00234556665555 6665 321 2322
Q ss_pred hhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCcee
Q 006854 356 KQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHD 435 (628)
Q Consensus 356 ~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD 435 (628)
....+.++|+|++||||+ + ++||+||+++|+... .....|+|
T Consensus 134 ---~~~~~~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~~~~--------------------------~~~~~drd 175 (458)
T 3hsi_A 134 ---TREVFGVLHVKGFVFDDT--------V-LYSGASINNVYLHQF--------------------------EKYRYDRY 175 (458)
T ss_dssp ---SSGGGCCEECCEEEETTE--------E-EEESCCBSTTTTTCS--------------------------SCCEECCE
T ss_pred ---cccccCcceeeEEEECCC--------E-EEEeeecCHHHhcCC--------------------------cccCcchh
Confidence 113567999999999997 8 556699999766431 11235888
Q ss_pred eeeeEeCHHHHHHHHHHHH--HHhhhcccchhhhhhccccccccc--chhh-ccccccccCccccccCCCccccCCCCcc
Q 006854 436 LHCRLDGPAAYDVLINFEQ--RWRKATKLTELTFKFKRVSHWRDD--YLIK-IGRISWILSPELSLKTNGTTIVPRDDNV 510 (628)
Q Consensus 436 ~~~~l~Gpav~~l~~~F~~--rW~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 510 (628)
+ .+.||.+.|....|.+ .|+...-.. ++.. |... .... ...+...+.... .. .++.
T Consensus 176 ~--~i~g~~~~D~~~~~~~~~~~~g~~v~~-----l~~~--~~~~~~~~~~~~~~~~~~l~~~~-----~~-~~~~---- 236 (458)
T 3hsi_A 176 Q--KITHAELADSMVNFINDYLLDFSAVYP-----LDVT--NRPRTKEIRGNIRAYRKDLAQNG-----EY-SLKS---- 236 (458)
T ss_dssp E--EEECHHHHHHHHHHHHHTTCCTTTCEE-----SSSS--CCCCGGGTHHHHHHHHHHHHHHC-----CC-CCSS----
T ss_pred h--hhcCchHHHHHHHHHHhhhhcCccchh-----hHHH--hcccchhhHHHHHHHHHhhhhcc-----cc-cccc----
Confidence 4 4899999999998844 464321110 0000 0000 0000 000000000000 00 0111
Q ss_pred cccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCcchhhHHHHHHHHHHHhccceEEEeecccccccCC
Q 006854 511 VRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYA 590 (628)
Q Consensus 511 ~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~ 590 (628)
...+...+|+.+.. ++. + .+..+..+|+.+|.+|+++|||+||||+|+.
T Consensus 237 ------~~~~~~~~~v~p~~--~~~---~------------------~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~~-- 285 (458)
T 3hsi_A 237 ------AVKLPNVLSVSPLF--GLG---A------------------SGNELNQVIEDLFLQVQKKLVICTPYFNFPR-- 285 (458)
T ss_dssp ------CBSSCSSCEEEEEE--EES---S------------------SSCHHHHHHHHHHHTCSSEEEEECSSSCCCH--
T ss_pred ------cCCCCceEEEecCC--CCC---C------------------chhHHHHHHHHHHHhcccEEEEEEeccCCCH--
Confidence 00122335565522 110 0 1357999999999999999999999999986
Q ss_pred CCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 591 WPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 591 ~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
+|+++|..|+++|.+++|++
T Consensus 286 ---------------~~~~aL~~Aa~rGV~VrIi~ 305 (458)
T 3hsi_A 286 ---------------TLQHKIATLLENGKRVEIIV 305 (458)
T ss_dssp ---------------HHHHHHHHHHTTTCEEEEEE
T ss_pred ---------------HHHHHHHHHHHCCCeEEEEE
Confidence 79999999999999999886
No 3
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=168.09 Aligned_cols=130 Identities=22% Similarity=0.368 Sum_probs=106.4
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (628)
Q Consensus 10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~ 89 (628)
..+....|.|.|+|++|++|+++|..+.++ +|. ...+++||||+|.++
T Consensus 22 ~~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~------------------------------~~~g~sDPYv~v~l~ 69 (157)
T 2fk9_A 22 SGTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFK------------------------------KGHQLLDPYLTVSVD 69 (157)
T ss_dssp --CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSS------------------------------SSCCCCCEEEEEEET
T ss_pred chhccCccEEEEEEEEEECCCCcccccccc--ccc------------------------------cCCCCCCeEEEEEEC
Confidence 346688999999999999999887543211 111 011248999999999
Q ss_pred CeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccC----ceeEEEEEccCCCC
Q 006854 90 QATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG 164 (628)
Q Consensus 90 ~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~----~~~~~w~~L~~~~~ 164 (628)
+....||++++++.||.|||+|.|.+.. ...|.|+|||+|.++ +++||.+.|++.++..+ ...+.||+|. +
T Consensus 70 ~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~-~-- 145 (157)
T 2fk9_A 70 QVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-P-- 145 (157)
T ss_dssp TEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB-S--
T ss_pred CEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC-C--
Confidence 8777899999999999999999999875 468999999999998 99999999999999855 6789999993 2
Q ss_pred CCCCCCceEEEEEEEe
Q 006854 165 SPPKPGASIQLELKFT 180 (628)
Q Consensus 165 ~~~~~~g~i~l~l~y~ 180 (628)
.|+|+|+++|.
T Consensus 146 -----~G~i~l~l~~~ 156 (157)
T 2fk9_A 146 -----EGKVFVVITLT 156 (157)
T ss_dssp -----SCEEEEEEEEC
T ss_pred -----CcEEEEEEEEE
Confidence 49999999874
No 4
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=160.51 Aligned_cols=125 Identities=28% Similarity=0.478 Sum_probs=108.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (628)
..|.|.|+|++|++|+.++. +. +||||++.+.+.+ .
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~------------------------------------------~dpyv~v~~~~~~-~ 40 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GK------------------------------------------PDPIVSVIFKDEK-K 40 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SC------------------------------------------CCEEEEEECSSCE-E
T ss_pred CCcEEEEEEEEeeCCCCCCC-CC------------------------------------------CCeEEEEEECCEe-E
Confidence 46899999999999998775 54 9999999998765 7
Q ss_pred eeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEE---ccCCCCCC
Q 006854 95 RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD---IIAPSGSP 166 (628)
Q Consensus 95 kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~---L~~~~~~~ 166 (628)
||++++++.||+|||+|.|.+..+ ...|.|+|||++.++ +++||.+.+++.++..+.....|++ |.+..+.
T Consensus 41 kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~- 119 (140)
T 2dmh_A 41 KTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ- 119 (140)
T ss_dssp ECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCC-
T ss_pred EeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCC-
Confidence 999999999999999999998753 578999999999997 8999999999999998888889988 6555443
Q ss_pred CCCCceEEEEEEEeecCCC
Q 006854 167 PKPGASIQLELKFTPCDKN 185 (628)
Q Consensus 167 ~~~~g~i~l~l~y~p~~~~ 185 (628)
...|+|+|+++|.|.+..
T Consensus 120 -~~~G~l~l~~~~~p~~~~ 137 (140)
T 2dmh_A 120 -DTGATIDLVIGYDPPSGP 137 (140)
T ss_dssp -EEEEEEEEEEEECCCBSS
T ss_pred -CCCCEEEEEEEEECCCCC
Confidence 346999999999996553
No 5
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.79 E-value=1.4e-18 Score=162.67 Aligned_cols=124 Identities=21% Similarity=0.368 Sum_probs=101.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 55 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMNG 55 (153)
T ss_dssp TCEEEEEEEEEEESCC-------------------------------------------------CCEEEEEEEEETTTE
T ss_pred CccEEEEEEEEeeCCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 46789999999999998776654 99999999874
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCcee------EEEEEccCC
Q 006854 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI------SRWYDIIAP 162 (628)
Q Consensus 91 -~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~------~~w~~L~~~ 162 (628)
....+|++++++.||.|||+|.|.+......|.|+|||++.++ +++||++.|++.++..+... ..||+|...
T Consensus 56 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~ 135 (153)
T 3b7y_A 56 VLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR 135 (153)
T ss_dssp EEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCS
T ss_pred cceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccc
Confidence 3567999999999999999999999988888999999999997 99999999999999865432 589999543
Q ss_pred CCCCCCCCceEEEEEEEee
Q 006854 163 SGSPPKPGASIQLELKFTP 181 (628)
Q Consensus 163 ~~~~~~~~g~i~l~l~y~p 181 (628)
. ...+..|+|+|+++|.|
T Consensus 136 ~-~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 136 S-HKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp S-TTCCCCSEEEEEEEECC
T ss_pred c-CCCCcceEEEEEEEEeC
Confidence 3 33356799999999987
No 6
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.78 E-value=8.9e-19 Score=160.51 Aligned_cols=124 Identities=24% Similarity=0.485 Sum_probs=108.7
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeee
Q 006854 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (628)
Q Consensus 14 ~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~ 93 (628)
-..|.|.|+|++|++|+.++..+. +||||++.+.+..
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~- 43 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNN------------------------------------------MDPYVQLTCRTQD- 43 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCS------------------------------------------SCCCEEEESSSCE-
T ss_pred CCcEEEEEEEEeccCCCCcccCCC------------------------------------------cCceEEEEECCcc-
Confidence 367999999999999998876654 9999999998865
Q ss_pred eeecccc-CCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEecccccc-ccCceeEEEEEccCCCCCCCCCC
Q 006854 94 ARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTI-ATGELISRWYDIIAPSGSPPKPG 170 (628)
Q Consensus 94 ~kT~v~~-~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l-~~~~~~~~w~~L~~~~~~~~~~~ 170 (628)
.+|++++ ++.||.|||+|.|.+......|.|+|||++.++ +++||.+.|+|.++ ..++....||+|. .. .+..
T Consensus 44 ~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~---~~~~ 119 (136)
T 1wfj_A 44 QKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KD---EEYK 119 (136)
T ss_dssp EECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ET---TEEE
T ss_pred ceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cC---CccC
Confidence 6999998 899999999999999987888999999999987 99999999999999 4566678999996 22 2467
Q ss_pred ceEEEEEEEeecCC
Q 006854 171 ASIQLELKFTPCDK 184 (628)
Q Consensus 171 g~i~l~l~y~p~~~ 184 (628)
|+|+|+++|.|.+.
T Consensus 120 G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 120 GEIWVALSFKPSGP 133 (136)
T ss_dssp EEEEEEEEEEECCS
T ss_pred EEEEEEEEEEeCCC
Confidence 99999999999765
No 7
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.78 E-value=2e-18 Score=157.79 Aligned_cols=129 Identities=24% Similarity=0.358 Sum_probs=110.9
Q ss_pred CCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEE
Q 006854 7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV 86 (628)
Q Consensus 7 ~~~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v 86 (628)
+.+.......|.|.|+|++|++|+.++..+. +||||++
T Consensus 3 ~~s~~~~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v 40 (133)
T 2ep6_A 3 SGSSGDVKDVGILQVKVLKAADLLAADFSGK------------------------------------------SDPFCLL 40 (133)
T ss_dssp SCCCCSCCCSEEEEEEEEEEESCCCSSSSSC------------------------------------------CCEEEEE
T ss_pred cccccccCCceEEEEEEEeeECCCCCCCCCC------------------------------------------cCeEEEE
Confidence 4455666678999999999999998876654 9999999
Q ss_pred EECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854 87 VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (628)
Q Consensus 87 ~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~ 165 (628)
.+.+.. .+|++++++.||.|||+|.|.+......|.|+|||++.++ +++||++.+++.++..+. ..|++|....++
T Consensus 41 ~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~ 117 (133)
T 2ep6_A 41 ELGNDR-LQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLE 117 (133)
T ss_dssp EETTEE-EECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTT
T ss_pred EECCEE-EEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCC
Confidence 998865 6999999999999999999999988888999999999997 999999999999998664 589999654433
Q ss_pred CCCCCceEEEEEEEee
Q 006854 166 PPKPGASIQLELKFTP 181 (628)
Q Consensus 166 ~~~~~g~i~l~l~y~p 181 (628)
....|+|+|+++|..
T Consensus 118 -~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 118 -QAFKGVIYLEMDLIY 132 (133)
T ss_dssp -SCCSSEEEEEEEEEE
T ss_pred -CccceEEEEEEEEEe
Confidence 356799999999864
No 8
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.77 E-value=1.1e-17 Score=155.71 Aligned_cols=124 Identities=23% Similarity=0.435 Sum_probs=104.7
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe
Q 006854 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (628)
Q Consensus 12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~ 91 (628)
.....|.|.|+|++|++|+.++..+. +||||++.++..
T Consensus 12 ~~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~ 49 (148)
T 3kwu_A 12 TSKWSAKISITVVCAQGLQAKDKTGS------------------------------------------SDPYVTVQVGKT 49 (148)
T ss_dssp ---CCEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTE
T ss_pred ccccccEEEEEEEeeeCCCCCCCCCC------------------------------------------cCeEEEEEECCE
Confidence 44557999999999999998876665 999999999775
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCC-----------C-CeeeEEEeccccccccCceeEEEEEc
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-----------G-AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~-----------~-~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
. .+|++++++.||.|||+|.|.+..+...|.|+|||++.+ + +++||.+.+++.++. .....|++|
T Consensus 50 ~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L 126 (148)
T 3kwu_A 50 K-KRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNL 126 (148)
T ss_dssp E-EECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEEC
T ss_pred E-EECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEc
Confidence 4 699999999999999999999988888999999999986 4 999999999999983 456899999
Q ss_pred cCCCCCCCCCCceEEEEEEEee
Q 006854 160 IAPSGSPPKPGASIQLELKFTP 181 (628)
Q Consensus 160 ~~~~~~~~~~~g~i~l~l~y~p 181 (628)
. +.+......|+|+|+++|..
T Consensus 127 ~-~~~~~~~~~G~i~l~l~~e~ 147 (148)
T 3kwu_A 127 D-KRTDKSAVSGAIRLHISVEI 147 (148)
T ss_dssp B-CSSTTCCCCCEEEEEEEEEC
T ss_pred c-cCCCCCCCceEEEEEEEEEe
Confidence 5 33333456799999999853
No 9
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.77 E-value=3.2e-18 Score=157.31 Aligned_cols=130 Identities=17% Similarity=0.381 Sum_probs=105.3
Q ss_pred EeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCee
Q 006854 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (628)
Q Consensus 13 ~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~ 92 (628)
....|.|.|+|++|++|++++..+.+. ++ . +.+...+||||++.+++..
T Consensus 2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~---~g--------------------~--------~~~~~~~DPyv~v~l~~~~ 50 (136)
T 1gmi_A 2 VVFNGLLKIKICEAVSLKPTAWSLRDA---VG--------------------P--------RPQTFLLDPYIALNVDDSR 50 (136)
T ss_dssp CCEEEEEEEEEEEEESCCCCHHHHCC----CC--------------------S--------SCCCCCCCEEEEEEETTEE
T ss_pred cccceEEEEEEEeCcCCCCcccccccc---cc--------------------c--------ccCCcCcCcEEEEEECCeE
Confidence 357899999999999999876443200 10 0 0111238999999998877
Q ss_pred eeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccC--ceeEEEEEccCCCCCCCCC
Q 006854 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDIIAPSGSPPKP 169 (628)
Q Consensus 93 ~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~ 169 (628)
..+|++++++.||.|||+|.|.+... ..|.|+|||+|.++ +++||.+.+++.++..+ ...+.|++|. +
T Consensus 51 ~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~-~------- 121 (136)
T 1gmi_A 51 IGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE-P------- 121 (136)
T ss_dssp EEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB-S-------
T ss_pred eeeeeEECCCcCCccCCEEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC-C-------
Confidence 78999999999999999999998765 78999999999988 99999999999999864 3458999983 2
Q ss_pred CceEEEEEEEeec
Q 006854 170 GASIQLELKFTPC 182 (628)
Q Consensus 170 ~g~i~l~l~y~p~ 182 (628)
.|+|+|+++|.+.
T Consensus 122 ~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 122 EGKVYVIIDLSGS 134 (136)
T ss_dssp SCEEEEEEEEEEE
T ss_pred CeEEEEEEEEEec
Confidence 4999999999875
No 10
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.76 E-value=8.3e-18 Score=161.42 Aligned_cols=124 Identities=20% Similarity=0.369 Sum_probs=99.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-----
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----- 90 (628)
.|.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~ 44 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMSGI 44 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCC------------------------------------------CCEEEEEEEEETTTEE
T ss_pred cEEEEEEEEEeeCCCCcCCCCC------------------------------------------cCcEEEEEEECCCCCc
Confidence 5889999999999998876665 99999999874
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCcee-E-----EEEEccCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI-S-----RWYDIIAPS 163 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~-~-----~w~~L~~~~ 163 (628)
..+.+|++++++.||.|||+|.|.+......|.|+|||++.++ +++||.+.|+|.++..+... + .||+|...
T Consensus 45 ~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~- 123 (176)
T 3m7f_B 45 LTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR- 123 (176)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCS-
T ss_pred ccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEcccc-
Confidence 1567999999999999999999999987788999999999997 89999999999999866433 2 79999533
Q ss_pred CCCCCCCceEEEEEEEeec
Q 006854 164 GSPPKPGASIQLELKFTPC 182 (628)
Q Consensus 164 ~~~~~~~g~i~l~l~y~p~ 182 (628)
....+..|+|+|+|+|.|.
T Consensus 124 ~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 124 SHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp STTCCCCSEEEEEEEECC-
T ss_pred CCCCccCEEEEEEEEEEeC
Confidence 3334567999999999997
No 11
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.75 E-value=8e-18 Score=151.97 Aligned_cols=118 Identities=25% Similarity=0.424 Sum_probs=99.4
Q ss_pred ceEEEEEEEEeeCCCCCC---CCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--
Q 006854 16 HGDLDLKIIRARRLPNMD---MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-- 90 (628)
.|.|.|+|++|++|+.++ ..+ .+||||++.+.+
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g------------------------------------------~~dpyv~v~~~~~~ 39 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLD------------------------------------------TPDPYVELFISTTP 39 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHC------------------------------------------CCCEEEEEECTTST
T ss_pred CcEEEEEEEeeeCCCCCCccccCC------------------------------------------CCCCEEEEEEccCC
Confidence 588999999999999752 222 299999999986
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecC-CCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~ 169 (628)
....||++++++.||.|||+|.|.+.. ....|.|+|||++.+++++||.+.++|.++..+.....|++|. +. .
T Consensus 40 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~-~~-----~ 113 (126)
T 1rlw_A 40 DSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN-QV-----T 113 (126)
T ss_dssp TCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEET-TT-----E
T ss_pred CceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcC-CC-----c
Confidence 356899999999999999999999954 4678999999999988999999999999999999999999994 32 3
Q ss_pred CceEEEEEEEee
Q 006854 170 GASIQLELKFTP 181 (628)
Q Consensus 170 ~g~i~l~l~y~p 181 (628)
.|+|+++|..+|
T Consensus 114 ~g~i~~~le~~~ 125 (126)
T 1rlw_A 114 EMVLEMSLEVAS 125 (126)
T ss_dssp EEEEEEEEECCC
T ss_pred eEEEEEEEEeCC
Confidence 477777776554
No 12
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.75 E-value=1.8e-18 Score=169.49 Aligned_cols=136 Identities=14% Similarity=0.190 Sum_probs=102.4
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~ 320 (628)
++.|.+|+++|++|+++|+|++|+|+. ..|.++|++|++|||+||||+ |......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~-----------------~~i~~aL~~aa~rGV~Vrii~-D~~~~~~------- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS-----------------PQLGRAVQLLHQRGVRVRVIT-DCDYMAL------- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC-----------------HHHHHHHHHHHHTTCEEEEEE-SSCCC---------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCcEEEEE-ecccccc-------
Confidence 578999999999999999999998742 479999999999999999996 8642211
Q ss_pred CcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCC
Q 006854 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (628)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~ 400 (628)
.....+.|..+||.+..... ....|+|++|||++ ++|+||+|++...+.
T Consensus 100 ------~~~~~~~l~~~gi~v~~~~~----------------~~~~H~K~~viD~~--------~~~~GS~N~t~~~~~- 148 (196)
T 4ggj_A 100 ------NGSQIGLLRKAGIQVRHDQD----------------LGYMHHKFAIVDKK--------VLITGSLNWTTQAIQ- 148 (196)
T ss_dssp -------CCHHHHHHHTTCEEEECCS----------------SSCCCCEEEEETTT--------EEEEESCCBCHHHHH-
T ss_pred ------cHHHHHHHHhcCCCcccccc----------------cccccCcEEEEcce--------EEEecCccCChhhhc-
Confidence 12235668889999874211 12459999999998 999999998873221
Q ss_pred CCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhccc
Q 006854 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKL 462 (628)
Q Consensus 401 ~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~ 462 (628)
..|.+..+.-.+++|.++.+.|.+.|+.+...
T Consensus 149 ------------------------------~n~E~~~~i~~~~~~~~~~~~F~~~W~~~~p~ 180 (196)
T 4ggj_A 149 ------------------------------NNRENVLIMEDTEYVRLFLEEFERIWEEFDPT 180 (196)
T ss_dssp ------------------------------HCCEEEEEECCHHHHHHHHHHHHHHHHHTCCC
T ss_pred ------------------------------ccceeEEEEECHHHHHHHHHHHHHHHHhCCCC
Confidence 12334444444568999999999999876543
No 13
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.74 E-value=1.6e-17 Score=189.50 Aligned_cols=204 Identities=15% Similarity=0.136 Sum_probs=148.4
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcc
Q 006854 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~-----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~ 315 (628)
.+.|+.+++.|++|++ +|+|+.|.+.+ + ..+.++|++||++||+|+||+ |..+....
T Consensus 346 ~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~-------d---------~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~- 407 (687)
T 1xdp_A 346 YHTFEHVLELLRQASFDPSVLAIKINIYRVAK-------D---------SRIIDSMIHAAHNGKKVTVVV-ELQARFDE- 407 (687)
T ss_dssp TBCTHHHHHHHHHHHHCTTEEEEEEEESSCCT-------T---------CHHHHHHHHHHHTTCEEEEEE-CTTCSSTT-
T ss_pred hhhhhhHHHHHHHHhhCCcceEEEEEeeeecC-------c---------HHHHHHHHHHHhcCCEEEEEE-CCCcccch-
Confidence 3578999999999997 99998886533 1 589999999999999999996 87763210
Q ss_pred cccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceE---EEEcccc
Q 006854 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT---AFIGGID 392 (628)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~v---afvGG~n 392 (628)
.....+.+.|.++||++... .+ .+++|+|++|||++.+| .+ ||+||.|
T Consensus 408 ---------~~n~~~~~~L~~aGV~V~~~--~~--------------~~k~H~Ki~VID~re~~----~i~~~a~iGS~N 458 (687)
T 1xdp_A 408 ---------EANIHWAKRLTEAGVHVIFS--AP--------------GLKIHAKLFLISRKENG----EVVRYAHIGTGN 458 (687)
T ss_dssp ---------TTTTTTTHHHHHHTCEEEEC--CT--------------TCEECCEEEEEEEEETT----EEEEEEEEESSC
T ss_pred ---------hhHHHHHHHHHHCCCEEEEe--cC--------------CccccceEEEEEeccCC----eEEEEEEEeCCc
Confidence 01234566788899998741 11 24679999999952100 25 9999999
Q ss_pred CCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhcccchhhhhhcc
Q 006854 393 LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKR 471 (628)
Q Consensus 393 i~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~~~~~~~~~~~ 471 (628)
+....+ ..|+|+++.+.|| +|.++...|...|..+....
T Consensus 459 ~d~rs~--------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~~~-------- 498 (687)
T 1xdp_A 459 FNEKTA--------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPYRPVT-------- 498 (687)
T ss_dssp SCTTGG--------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTTSCCC--------
T ss_pred CCcchh--------------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhccccc--------
Confidence 987321 2589999999987 69999999999997643221
Q ss_pred cccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccc
Q 006854 472 VSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLI 551 (628)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~ 551 (628)
+.. ++.+ |..
T Consensus 499 --------------------------------~~~-------------------l~~s---------P~~---------- 508 (687)
T 1xdp_A 499 --------------------------------FDY-------------------LMVS---------PQN---------- 508 (687)
T ss_dssp --------------------------------CSS-------------------CEEE---------TTS----------
T ss_pred --------------------------------hhh-------------------eeeC---------Cch----------
Confidence 000 0001 000
Q ss_pred cccCcchhhHHHHHHHHHHHhccc----eEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 552 CAKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 552 ~~~~~~~e~~I~~ay~~aI~~Ak~----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
....+...+...|+.|++ +|+|.++| +|+. .|.++|.+|+++|++++++|
T Consensus 509 ------~~~~l~~~I~~ei~~A~~g~~~~I~i~~~~-lpD~-----------------~ii~AL~~Aa~rGV~VrLiv 562 (687)
T 1xdp_A 509 ------SRRLLYEMVDREIANAQQGLPSGITLKLNN-LVDK-----------------GLVDRLYAASSSGVPVNLLV 562 (687)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCCCCEEEEESC-BCCH-----------------HHHHHHHHHHHTTCCEEEEE
T ss_pred ------hhHHHHHHHHHHHHHHHcCCCCEEEEEeCC-CCCH-----------------HHHHHHHHHHHCCCEEEEEE
Confidence 123455666677888887 89999998 5664 79999999999999999997
No 14
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.72 E-value=1.7e-16 Score=180.11 Aligned_cols=207 Identities=11% Similarity=0.120 Sum_probs=147.5
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcc
Q 006854 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~-----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~ 315 (628)
.+.|+.+++.|++|++ +|.++.|++.. ...|.++|++||++||+|++|+ | .++..
T Consensus 351 ~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~----------------ds~Iv~ALi~AA~rGv~V~vLv-e-l~arf-- 410 (705)
T 2o8r_A 351 YYTYDYVVRLLMEAAISPDVSEIRLTQYRVAE----------------NSSIISALEAAAQSGKKVSVFV-E-LKARF-- 410 (705)
T ss_dssp TBCSHHHHHHHHHHHTCTTEEEEEEEESCCCS----------------CCHHHHHHHHHHHTTCEEEEEE-C-CCSCC--
T ss_pred hHhHHHHHHHHHHhccCCCceEEEEEEEEEcC----------------CHHHHHHHHHHHHCCCEEEEEE-e-CCCCc--
Confidence 4679999999999999 99999997742 1589999999999999999996 8 66543
Q ss_pred cccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecC--CCCCCcceEEEEccccC
Q 006854 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ--ASGNNRKITAFIGGIDL 393 (628)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~--~~~~~~~~vafvGG~ni 393 (628)
.......+.+.|+++||+|.+ .+ .++++|+|++|||++ .+|.- +..+.+|.-|+
T Consensus 411 -------dee~ni~wa~~Le~aGv~Vv~--g~--------------~~lk~H~Ki~lIdrr~~~~g~~-~~y~~igtGN~ 466 (705)
T 2o8r_A 411 -------DEENNLRLSERMRRSGIRIVY--SM--------------PGLKVHAKTALILYHTPAGERP-QGIALLSTGNF 466 (705)
T ss_dssp -----------CHHHHHHHHHHTCEEEE--CC--------------TTCCBCCCEEEEEECCCSSSCC-CEEEEEESSCS
T ss_pred -------chhhhHHHHHHHHHCCCEEEE--cc--------------CCCCceeEEEEEecccccCCce-eEEEeccccce
Confidence 111235678899999999974 11 346899999999986 22110 11233332222
Q ss_pred CCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhcccchhhhhhccc
Q 006854 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKRV 472 (628)
Q Consensus 394 ~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~~~~~~~~~~~~ 472 (628)
.+ ....-|.|+++...+| ++.++...|...|......
T Consensus 467 n~--------------------------------~tariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~~~---------- 504 (705)
T 2o8r_A 467 NE--------------------------------TTARIYSDTTLMTANTDIVHDVYRLFRILDGDPEPA---------- 504 (705)
T ss_dssp SC--------------------------------CCSSCEEEEEEEECCHHHHHHHHHHHHHHTTCCCCS----------
T ss_pred ee--------------------------------eEEEEEeeeeeeecChHHHHHHHHHHHHHhCCCCCC----------
Confidence 22 1122477888888775 6699999996666321000
Q ss_pred ccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhcccccc
Q 006854 473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552 (628)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~ 552 (628)
.. .|++.+ |.
T Consensus 505 ------------------------------------------------~~-~~l~~s---------P~------------ 514 (705)
T 2o8r_A 505 ------------------------------------------------RF-SRLLVA---------RY------------ 514 (705)
T ss_dssp ------------------------------------------------CC-SSCEET---------TT------------
T ss_pred ------------------------------------------------Cc-eEEEEC---------Cc------------
Confidence 00 123321 11
Q ss_pred ccCcchhhHHHHHHHHHHHhccc----eEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 553 ~~~~~~e~~I~~ay~~aI~~Ak~----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
.....|.+.+..+|.+|++ +|+|.++| +|+. +|.++|.+|+.+|+++++||
T Consensus 515 ----~~~~~i~~~i~~eI~~Ak~G~~a~I~ik~n~-l~D~-----------------~ii~aL~~As~~GV~V~LIV 569 (705)
T 2o8r_A 515 ----NMGEAITNLIEREIENVKRGKRGYMLLKMNG-LQDK-----------------NVITQLYRASEAGVEIDLIV 569 (705)
T ss_dssp ----THHHHHHHHHHHHHHHHHTTCCCEEEEEESC-BCCH-----------------HHHHHHHHHHHTTCEEEEEE
T ss_pred ----hHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCCH-----------------HHHHHHHHHHHCCCeEEEEE
Confidence 1246799999999999999 99999999 7765 79999999999999999998
No 15
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.71 E-value=1.2e-16 Score=145.80 Aligned_cols=120 Identities=19% Similarity=0.352 Sum_probs=100.3
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-eeeee
Q 006854 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (628)
Q Consensus 17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-~~~~k 95 (628)
..|.|+|++|++|++++..+. +||||++.+.+ ....+
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDpyv~v~~~~~~~~~k 42 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRL------------------------------------------PDPFAKIVVDGSGQCHS 42 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCC------------------------------------------CCEEEEEEETTTCCEEE
T ss_pred EEEEEEEEEeECCCCCCCCCC------------------------------------------cCeEEEEEECCCCceEE
Confidence 579999999999998887665 99999999975 56689
Q ss_pred eccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC----CeeeEEEecccccc-ccCceeEEEEEccCCC-CCCCCC
Q 006854 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTI-ATGELISRWYDIIAPS-GSPPKP 169 (628)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~----~~~iG~~~i~l~~l-~~~~~~~~w~~L~~~~-~~~~~~ 169 (628)
|++++++.||.|||+|.|.+.... .|.|+|||++.++ +++||.+.+++..+ ........|++|.... ....+.
T Consensus 43 T~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~ 121 (132)
T 3pyc_A 43 TDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAV 121 (132)
T ss_dssp CCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCC
T ss_pred CCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCce
Confidence 999999999999999999998754 5999999999886 69999999999988 3444456899996543 233456
Q ss_pred CceEEEEEEE
Q 006854 170 GASIQLELKF 179 (628)
Q Consensus 170 ~g~i~l~l~y 179 (628)
.|+|.++|++
T Consensus 122 ~G~i~v~l~~ 131 (132)
T 3pyc_A 122 RGQIVVSLQT 131 (132)
T ss_dssp CSEEEEEEEE
T ss_pred eEEEEEEEEc
Confidence 8999999975
No 16
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.71 E-value=5.2e-17 Score=155.92 Aligned_cols=133 Identities=17% Similarity=0.256 Sum_probs=104.7
Q ss_pred CceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEE
Q 006854 9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV 88 (628)
Q Consensus 9 ~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l 88 (628)
+.......++|.|+|++|++|+..+..+. +||||+|.+
T Consensus 28 ~~~~~~~~~~L~V~V~~A~~L~~~~~~~~------------------------------------------sDPYv~v~~ 65 (173)
T 2nq3_A 28 SMGSLTMKSQLQITVISAKLKENKKNWFG------------------------------------------PSPYVEVTV 65 (173)
T ss_dssp ---CCSCCEEEEEEEEEEEECCCC--CCC------------------------------------------CCEEEEEEE
T ss_pred cccccCCceEEEEEEEEeECCCCcccCCC------------------------------------------CCeEEEEEE
Confidence 33345578899999999999985433332 899999999
Q ss_pred CCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCc-----eeEEEEEccCC
Q 006854 89 PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE-----LISRWYDIIAP 162 (628)
Q Consensus 89 ~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~ 162 (628)
++ .+.||++++++.||+|||+|.|.+.. ...|.|+|||+|.++ +++||.+.+++.++..+. ....|++|...
T Consensus 66 ~~-~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~ 143 (173)
T 2nq3_A 66 DG-QSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD 143 (173)
T ss_dssp TT-EEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES
T ss_pred CC-EEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC
Confidence 88 55799999999999999999999964 788999999999997 899999999999987432 23679999654
Q ss_pred CCCCCCCCceEEEEEEEeecCCCC
Q 006854 163 SGSPPKPGASIQLELKFTPCDKNP 186 (628)
Q Consensus 163 ~~~~~~~~g~i~l~l~y~p~~~~~ 186 (628)
. ...+..|+|.++|+|.+.+...
T Consensus 144 ~-~~~~~~G~L~v~l~~l~~~~~~ 166 (173)
T 2nq3_A 144 K-EPTETIGDLSICLDGLQLESEV 166 (173)
T ss_dssp S-CTTSEEEEEEEEEESEECC---
T ss_pred C-CCCcccEEEEEEEeeeecchhh
Confidence 2 2345679999999999875443
No 17
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.70 E-value=1.1e-16 Score=146.94 Aligned_cols=115 Identities=17% Similarity=0.399 Sum_probs=97.7
Q ss_pred CCCCCCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCc
Q 006854 3 AGDDSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDP 82 (628)
Q Consensus 3 ~~~~~~~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp 82 (628)
-++.+-.++..+..+.|.|+|++|++|+. +..+. +||
T Consensus 6 ~~~~~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~------------------------------------------~DP 42 (134)
T 2b3r_A 6 HGSGAVKLSVSYRNGTLFIMVMHIKDLVT-EDGAD------------------------------------------PNP 42 (134)
T ss_dssp -CCCEEEEEEEEETTEEEEEEEEEECCCC-TTSCC------------------------------------------CCE
T ss_pred cccEEEEEEEeecCCEEEEEEEEeeCCCC-CCCCC------------------------------------------CCe
Confidence 34445566788899999999999999995 44443 999
Q ss_pred EEEEEECC----eeeeeeccccCCCCCeEeeEEEEE-ecC---CCceEEEEEEEcCCCC-CeeeEEEeccccccccCcee
Q 006854 83 YVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (628)
Q Consensus 83 yv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~-~~~---~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~ 153 (628)
||++.+.+ ..+.||++++++.||+|||+|.|. +.. ....|.|+|||++.++ +++||++.++|.++..+...
T Consensus 43 yv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~ 122 (134)
T 2b3r_A 43 YVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKET 122 (134)
T ss_dssp EEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCE
T ss_pred EEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCc
Confidence 99999832 345799999999999999999999 764 3468999999999998 89999999999999988889
Q ss_pred EEEEEcc
Q 006854 154 SRWYDII 160 (628)
Q Consensus 154 ~~w~~L~ 160 (628)
..||+|.
T Consensus 123 ~~W~~L~ 129 (134)
T 2b3r_A 123 VKWYQLT 129 (134)
T ss_dssp EEEEECB
T ss_pred ceeEECC
Confidence 9999994
No 18
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.67 E-value=7.8e-16 Score=158.22 Aligned_cols=127 Identities=29% Similarity=0.487 Sum_probs=109.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~ 92 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+ ..
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~ 54 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 54 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSS------------------------------------------CCEEEEEEEETCTTS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeEEEEEEEcCCCc
Confidence 67899999999999998876654 99999999964 34
Q ss_pred eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCC
Q 006854 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (628)
Q Consensus 93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~ 168 (628)
..+|++++++.||.|||+|.|.+... ...|.|+|||.+.++ +++||.+.++|.++..+.....|++|....+....
T Consensus 55 ~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~ 134 (284)
T 2r83_A 55 KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134 (284)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCC
T ss_pred eEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecccccccc
Confidence 57999999999999999999998753 468999999999987 89999999999999988888999999655443345
Q ss_pred CCceEEEEEEEeecC
Q 006854 169 PGASIQLELKFTPCD 183 (628)
Q Consensus 169 ~~g~i~l~l~y~p~~ 183 (628)
..|+|.++++|.|..
T Consensus 135 ~~G~i~l~l~~~p~~ 149 (284)
T 2r83_A 135 KLGDICFSLRYVPTA 149 (284)
T ss_dssp CCCEEEEEEEEETTT
T ss_pred ccccEEEEEEecCcC
Confidence 679999999998753
No 19
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.67 E-value=4.1e-16 Score=145.91 Aligned_cols=105 Identities=32% Similarity=0.530 Sum_probs=92.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~ 92 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+ ..
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 77 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 77 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETTCCS
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------cCeEEEEEEEcCCCc
Confidence 56899999999999998876654 99999999953 45
Q ss_pred eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccC
Q 006854 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (628)
Q Consensus 93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 161 (628)
..||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+....+|++|..
T Consensus 78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred eEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 67999999999999999999988753 578999999999997 9999999999999998888999999953
No 20
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.67 E-value=4.6e-16 Score=144.97 Aligned_cols=108 Identities=22% Similarity=0.390 Sum_probs=94.4
Q ss_pred eeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (628)
Q Consensus 11 ~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~ 90 (628)
.+.|..+.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 25 ~l~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~ 62 (149)
T 1a25_A 25 QAHIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIP 62 (149)
T ss_dssp EEEESSSEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEES
T ss_pred EEEecCCEEEEEEEEeeCCCCCCCCCC------------------------------------------cCeEEEEEEEC
Confidence 366778999999999999998876654 99999999974
Q ss_pred ----eeeeeeccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccC
Q 006854 91 ----ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (628)
Q Consensus 91 ----~~~~kT~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 161 (628)
....||++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.|+|.++..+ ...+||+|..
T Consensus 63 ~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 63 DPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp CTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 4567999999999999999999998764 357999999999997 99999999999999866 4789999953
No 21
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.66 E-value=5.5e-16 Score=141.79 Aligned_cols=110 Identities=23% Similarity=0.395 Sum_probs=94.9
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (628)
Q Consensus 10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~ 89 (628)
+.+.|..|.|.|+|++|++|+.++..+. +||||++.+.
T Consensus 9 ~~l~~~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~ 46 (137)
T 3rdl_A 9 LKAEVTDEKLHVTVRDAKNLIPMDPNGL------------------------------------------SDPYVKLKLI 46 (137)
T ss_dssp EEEEEETTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEE
T ss_pred EEEEEcCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeeEEEEEE
Confidence 3466789999999999999998876654 9999999984
Q ss_pred ----CeeeeeeccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854 90 ----QATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (628)
Q Consensus 90 ----~~~~~kT~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 162 (628)
.....+|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.++|.++..+. ..+||+|...
T Consensus 47 ~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 125 (137)
T 3rdl_A 47 PDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ 125 (137)
T ss_dssp CCTTCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH
T ss_pred cCCCCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcCc
Confidence 24567999999999999999999998754 357999999999997 999999999999998665 8899999543
No 22
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.66 E-value=1.7e-16 Score=146.38 Aligned_cols=110 Identities=27% Similarity=0.424 Sum_probs=95.2
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (628)
Q Consensus 10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~ 89 (628)
+.+.|..|.|.|+|++|++|+.++..+. +||||++.+.
T Consensus 11 ~~l~y~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~ 48 (142)
T 1rh8_A 11 LQINYDLGNLIIHILQARNLVPRDNNGY------------------------------------------SDPFVKVYLL 48 (142)
T ss_dssp EEEEEETTEEEEEEEEEESCCCCSSSSC------------------------------------------SCCEEEEEET
T ss_pred EEEEEcCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCceEEEEEe
Confidence 3467788999999999999998876664 9999999998
Q ss_pred Ce-------------eeeeeccccCCCCCeEeeEEEEE-ecC---CCceEEEEEEEcCCCC-CeeeEEEeccccccccCc
Q 006854 90 QA-------------TVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (628)
Q Consensus 90 ~~-------------~~~kT~v~~~~~~P~wne~f~~~-~~~---~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~ 151 (628)
+. ...||++++++.||.|||+|.|. +.. ....|.|+|||++.++ +++||.+.|+|.++..+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~ 128 (142)
T 1rh8_A 49 PGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD 128 (142)
T ss_dssp TSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT
T ss_pred cCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCC
Confidence 63 34799999999999999999997 543 3568999999999997 899999999999998777
Q ss_pred eeEEEEEccC
Q 006854 152 LISRWYDIIA 161 (628)
Q Consensus 152 ~~~~w~~L~~ 161 (628)
....||+|..
T Consensus 129 ~~~~W~~L~~ 138 (142)
T 1rh8_A 129 NTPRWYPLKE 138 (142)
T ss_dssp TCCEEEECBC
T ss_pred CCCeEEECCc
Confidence 7889999953
No 23
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.66 E-value=4.7e-16 Score=148.67 Aligned_cols=110 Identities=22% Similarity=0.400 Sum_probs=96.0
Q ss_pred eeEeeceEEEEEEEEeeCCCCCCC-CchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854 11 KVIYLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (628)
Q Consensus 11 ~~~~~~g~L~v~I~~a~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~ 89 (628)
.+.|..+.|.|+|++|++|+.++. .+. +||||++.+.
T Consensus 24 ~l~y~~~~L~V~v~~a~~L~~~d~~~g~------------------------------------------~DPyv~v~l~ 61 (171)
T 2q3x_A 24 GMEDKKGQLEVEVIRARSLTQKPGSKST------------------------------------------PAPYVKVYLL 61 (171)
T ss_dssp EEEEETTEEEEEEEEEESCCCCC---CC------------------------------------------CEEEEEEEEE
T ss_pred EEEECCCEEEEEEEEeeCCCCCCcCCCC------------------------------------------CCceEEEEEE
Confidence 356788999999999999998874 443 9999999986
Q ss_pred C----eeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEE-EcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854 90 Q----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (628)
Q Consensus 90 ~----~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~-d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 162 (628)
+ ..+.||++++++.||+|||+|.|.+......|.|+|| |+|.++ +++||.+.++|.++..+....+||+|...
T Consensus 62 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 62 ENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp ETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 4 2367999999999999999999999877888999999 999998 89999999999999988889999999543
No 24
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.65 E-value=4.9e-16 Score=143.55 Aligned_cols=104 Identities=33% Similarity=0.531 Sum_probs=92.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~ 92 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+ ..
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 69 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 69 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBC------------------------------------------CCEEEEEEEESCCSC
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------cCcEEEEEEECCCCc
Confidence 67889999999999998776554 99999999943 44
Q ss_pred eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEcc
Q 006854 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (628)
Q Consensus 93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~ 160 (628)
..+|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.++|.++..+.....|++|.
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 68999999999999999999998754 368999999999997 899999999999999998899999994
No 25
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=146.05 Aligned_cols=106 Identities=16% Similarity=0.309 Sum_probs=91.1
Q ss_pred ceEEEEEEEEeeCCCCCC-CCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
.+.|.|+|++|++|+.++ ..+. +||||++.+.+
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~l~~~~~~ 59 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKR------------------------------------------SNPYVKTYLLPDKSR 59 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTB------------------------------------------CCEEEEEEEETCCSG
T ss_pred CCEEEEEEEEecCCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 689999999999999876 3443 99999999864
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 163 (628)
..+.+|++++++.||.|||+|.|.+... ...|.|+|||+|.++ +++||.+.++|.++..+.....||+|....
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 136 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence 2367999999999999999999998774 346999999999997 899999999999999877788999995443
No 26
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=140.36 Aligned_cols=105 Identities=29% Similarity=0.464 Sum_probs=91.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~ 92 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+ ..
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 61 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKH 61 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEEEEESCCSS
T ss_pred CCCEEEEEEEEeECCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 57889999999999998876554 99999999953 45
Q ss_pred eeeeccccCCCCCeEeeEEEEEecC----CCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccC
Q 006854 93 VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (628)
Q Consensus 93 ~~kT~v~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 161 (628)
..||++++++.||+|||+|.|.+.+ ....|.|+|||++.++ +++||++.+++.++..+.....|++|..
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 135 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence 6799999999999999999998533 2567999999999987 9999999999999998888899999953
No 27
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=148.50 Aligned_cols=104 Identities=25% Similarity=0.415 Sum_probs=91.1
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC---e
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A 91 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---~ 91 (628)
..+.|.|+|++|++|++++..+. +||||++.+.+ .
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~------------------------------------------sDPyVkv~l~~~~~~ 78 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQD------------------------------------------QKVNIRVAVLPCSES 78 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCC------------------------------------------SEEEEEEEEESCSCH
T ss_pred CCCEEEEEEEEccCcCCcccCCC------------------------------------------CCEEEEEEEecCCCC
Confidence 46899999999999998876665 99999999965 2
Q ss_pred --eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccc-cCceeEEEEEcc
Q 006854 92 --TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDII 160 (628)
Q Consensus 92 --~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~-~~~~~~~w~~L~ 160 (628)
.+.||++++++.||+|||+|.|.+... ...|.|+|||+|.++ +++||.+.++|.++. .+....+||+|.
T Consensus 79 ~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 79 TTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 368999999999999999999998753 467999999999998 899999999999996 467788999984
No 28
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.64 E-value=7e-16 Score=144.20 Aligned_cols=136 Identities=16% Similarity=0.245 Sum_probs=107.1
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~ 320 (628)
..+++.+.++|++|+++|+|++|.|.. ..+.++|.+|++|||+||||+ |..++...
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~-----------------~~i~~aL~~a~~rGV~Vril~-~~~~~~~~------ 68 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA-----------------PDIMKALVAAKKRGVDVKIVI-DERGNTGR------ 68 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC-----------------HHHHHHHHHHHHTTCEEEEEE-ESTTCCSH------
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC-----------------HHHHHHHHHHHHCCCEEEEEE-eCcccccc------
Confidence 367999999999999999999886621 479999999999999999996 76653210
Q ss_pred CcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCC
Q 006854 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (628)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~ 400 (628)
......+.|.++|+++.... + ..++|.|++|||++ ++++||+|++...+
T Consensus 69 -----~~~~~~~~L~~~gv~v~~~~--~--------------~~~~H~K~~iiD~~--------~~~iGS~N~~~~~~-- 117 (155)
T 1byr_A 69 -----ASIAAMNYIANSGIPLRTDS--N--------------FPIQHDKVIIVDNV--------TVETGSFNFTKAAE-- 117 (155)
T ss_dssp -----HHHHHHHHHHHTTCCEEEEC--S--------------SSCCCCCEEEETTT--------EEEEESCCBSHHHH--
T ss_pred -----ccHHHHHHHHHCCCeEEEcC--C--------------cccccceEEEECCC--------EEEEECCCCCcccc--
Confidence 13456677888999987521 1 12569999999998 99999999987211
Q ss_pred CCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH--HHHHHHHHHHHHHhhhcc
Q 006854 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKATK 461 (628)
Q Consensus 401 ~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp--av~~l~~~F~~rW~~~~~ 461 (628)
..|++..+.++|+ .+.++...|.+.|..+..
T Consensus 118 ------------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~~ 150 (155)
T 1byr_A 118 ------------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGRD 150 (155)
T ss_dssp ------------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCEE
T ss_pred ------------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCCC
Confidence 2467999999993 899999999999987643
No 29
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.62 E-value=2e-15 Score=139.17 Aligned_cols=104 Identities=29% Similarity=0.467 Sum_probs=91.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 64 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGL------------------------------------------ADPYVKLHLLPGASK 64 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSC------------------------------------------CCEEEEEEEESCCSG
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 67899999999999998876554 99999999975
Q ss_pred eeeeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEcc
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~ 160 (628)
....||++++++.||.|||+|.|. +... ...|.|+|||++.++ +++||.+.+++.++..++....|++|.
T Consensus 65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred cceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 356899999999999999999998 5432 367999999999997 899999999999999888888899884
No 30
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.62 E-value=2.1e-16 Score=156.86 Aligned_cols=152 Identities=13% Similarity=0.136 Sum_probs=109.5
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~ 320 (628)
.+.++.|+++|++|++||+|+.|+|+. ..|.++|++||+|||+||||+ |..++...
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~Y~~~~-----------------~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~------ 112 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAIYTFTS-----------------LFLADSIKRALQRGVIIRIIS-DGEMVYSK------ 112 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECSCBCC-----------------HHHHHHHHHHHHHTCEEEEEC-CTTTTTST------
T ss_pred HHHHHHHHHHHHHhhhEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCeEEEEE-echhhhhh------
Confidence 568999999999999999999998732 579999999999999999996 98765431
Q ss_pred CcccCChHHHHhhhccCCceEEeccCCCCCccchh--h--hccccccccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYF--K--QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (628)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~--~--~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~ 396 (628)
......+..+++.+...........+++ . ....+.+.++|+|+++||+. ++++||+|++..
T Consensus 113 -------~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~t~~ 177 (220)
T 4gel_A 113 -------GSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNWTAL 177 (220)
T ss_dssp -------TCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCBSHH
T ss_pred -------HHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCcccccc
Confidence 1223345556766653211111001110 0 00123456789999999998 999999998762
Q ss_pred CCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhccc
Q 006854 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKL 462 (628)
Q Consensus 397 r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~ 462 (628)
.. ...|.|+.+...|++|.++++.|.+.|+.....
T Consensus 178 s~-------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~~~ 212 (220)
T 4gel_A 178 GL-------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFAKT 212 (220)
T ss_dssp HH-------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSEEC
T ss_pred cc-------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhccCC
Confidence 11 236889999999999999999999999876543
No 31
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.62 E-value=2e-15 Score=136.63 Aligned_cols=102 Identities=25% Similarity=0.442 Sum_probs=84.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 16 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~ 53 (129)
T 2bwq_A 16 VGHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSD 53 (129)
T ss_dssp TTTEEEEEEEEEESCCCCTTSCC------------------------------------------BCEEEEEEEESSCSG
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCEEEEEEecCCCC
Confidence 35889999999999998876654 89999999832
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecC----CCceEEEEEEEcCCCC---CeeeEEEeccccccccCceeEEEEEc
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~d~~~---~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
....+|++++++.||.|||+|.|.+.+ ....|.|+|||++.++ +++||.+.+++.++.... ..+||+|
T Consensus 54 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 54 KNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp GGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred CcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 456899999999999999999999533 2468999999999887 899999999999988654 7899998
No 32
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.62 E-value=3.2e-15 Score=140.05 Aligned_cols=109 Identities=22% Similarity=0.391 Sum_probs=91.6
Q ss_pred eeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (628)
Q Consensus 11 ~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~ 90 (628)
......+.|.|+|++|++|+.++ .+. +||||++.+.+
T Consensus 21 ~y~~~~~~L~V~v~~a~~L~~~d-~g~------------------------------------------~Dpyv~v~l~~ 57 (153)
T 3fbk_A 21 SIDAQDRVLLLHIIEGKGLISKQ-PGT------------------------------------------CDPYVKISLIP 57 (153)
T ss_dssp EEEESSSEEEEEEEEEESCCCCS-SSC------------------------------------------CCEEEEEEEES
T ss_pred EEECCCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCEEEEEEEEc
Confidence 35557889999999999999876 343 99999999843
Q ss_pred ----eeeeeeccccCCCCCeEeeEEEEEec--CCCceEEEEEEEcCCCC--CeeeEEEecccccccc-CceeEEEEEccC
Q 006854 91 ----ATVARTRVLKNSQEPVWNEHFNIPLA--HPLSNLEIQVKDDDVFG--AQIIGTAAIPAHTIAT-GELISRWYDIIA 161 (628)
Q Consensus 91 ----~~~~kT~v~~~~~~P~wne~f~~~~~--~~~~~l~i~v~d~d~~~--~~~iG~~~i~l~~l~~-~~~~~~w~~L~~ 161 (628)
..+.+|++++++.||.|||+|.|.+. .....|.|+|||++.++ +++||.+.+++.++.. +.....||+|..
T Consensus 58 ~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~ 137 (153)
T 3fbk_A 58 EDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG 137 (153)
T ss_dssp CSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred CCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence 34579999999999999999999984 34466999999999874 8999999999999984 778899999954
Q ss_pred C
Q 006854 162 P 162 (628)
Q Consensus 162 ~ 162 (628)
.
T Consensus 138 ~ 138 (153)
T 3fbk_A 138 E 138 (153)
T ss_dssp T
T ss_pred h
Confidence 3
No 33
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.60 E-value=7.4e-15 Score=134.84 Aligned_cols=105 Identities=29% Similarity=0.420 Sum_probs=88.9
Q ss_pred eceEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--e
Q 006854 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A 91 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~ 91 (628)
..+.|.|+|++|++|+.++.. +. +||||++.+.+ .
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~~~~~~~ 57 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMT------------------------------------------SDPYIKMTILPEKK 57 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTB------------------------------------------CEEEEEEEEETTTC
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCC------------------------------------------CCCEEEEEEecCCC
Confidence 678899999999999988764 43 99999999964 4
Q ss_pred eeeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCce-eEEEEEccC
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-ISRWYDIIA 161 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~-~~~w~~L~~ 161 (628)
...+|++++++.||+|||+|.|. +... ...|.|+|||++.++ +++||.+.++|.++..+.. ...|++|..
T Consensus 58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 56899999999999999999996 6653 357999999999997 8999999999999987543 456788843
No 34
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.60 E-value=4e-15 Score=137.01 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=72.7
Q ss_pred CCcEEEEEEC---CeeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCce
Q 006854 80 SDPYVTVVVP---QATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (628)
Q Consensus 80 ~dpyv~v~l~---~~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~ 152 (628)
+||||++.+. .....+|++++++.||+|||+|.|.+... ...|.|+|||+|.++ +++||.+.++|.++..+..
T Consensus 44 sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~ 123 (138)
T 1wfm_A 44 CDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLG 123 (138)
T ss_dssp CCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTT
T ss_pred cceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCccc
Confidence 9999999984 24457999999999999999999998764 467999999999998 9999999999999987778
Q ss_pred eEEEEEccC
Q 006854 153 ISRWYDIIA 161 (628)
Q Consensus 153 ~~~w~~L~~ 161 (628)
...|++|..
T Consensus 124 ~~~W~~L~~ 132 (138)
T 1wfm_A 124 AAQWGELKT 132 (138)
T ss_dssp CCEEEECCC
T ss_pred ccceeeCcC
Confidence 889999954
No 35
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.59 E-value=7.8e-15 Score=134.10 Aligned_cols=105 Identities=28% Similarity=0.439 Sum_probs=86.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 51 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMDIGGT------------------------------------------SDPYVKVWLMYKDKR 51 (138)
T ss_dssp TTTEEEEEEEEEESCCCCBTTTB------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCeEEEEEEEeeCCCCcCCCCC------------------------------------------cCeEEEEEEEeCCCc
Confidence 56899999999999998876554 99999999864
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCCC---ceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~~---~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 163 (628)
....+|++++++.||.|||+|.|.+.... ..|.|+|||++.++ +++||.+.+++.++. ....+|++|....
T Consensus 52 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~~~ 126 (138)
T 3n5a_A 52 VEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIARP 126 (138)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHHST
T ss_pred cceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHhCC
Confidence 34679999999999999999999987654 57999999999997 999999999998643 2234555554443
No 36
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.59 E-value=3.3e-15 Score=137.25 Aligned_cols=104 Identities=24% Similarity=0.400 Sum_probs=88.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (628)
.+.|.|+|++|++|+.++..+. +||||++.+.+ .
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~ 57 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK 57 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCC------------------------------------------CCEEEECCCSSCCSSS
T ss_pred CCEEEEEEEEccCCCCcCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence 6789999999999998876664 99999999842 4
Q ss_pred eeeeeccccCCCCCeEeeEEEEEe-cCC---CceEEEEEEEcCCCC---CeeeEEEeccccccccCceeEEEEEccCC
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPL-AHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~-~~~---~~~l~i~v~d~d~~~---~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 162 (628)
...+|++++++.||+|||+|.|.+ ... ...|.|+|||++.++ +++||.+.|+|.++.... ..+||+|...
T Consensus 58 ~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~ 134 (141)
T 1v27_A 58 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH 134 (141)
T ss_dssp SCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred cceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence 567999999999999999999994 322 468999999999886 799999999999987654 7899999543
No 37
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.58 E-value=9.8e-15 Score=137.39 Aligned_cols=104 Identities=27% Similarity=0.445 Sum_probs=88.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 60 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCce
Confidence 57899999999999998876654 99999999863
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecccccc------------ccCceeE
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI------------ATGELIS 154 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l------------~~~~~~~ 154 (628)
....+|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.|++..+ ..+....
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~ 140 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEE
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeee
Confidence 2467999999999999999999998764 357999999999997 99999999999853 2345678
Q ss_pred EEEEcc
Q 006854 155 RWYDII 160 (628)
Q Consensus 155 ~w~~L~ 160 (628)
+|++|.
T Consensus 141 ~W~~L~ 146 (159)
T 1tjx_A 141 QWHTLQ 146 (159)
T ss_dssp EEEECB
T ss_pred eEEECc
Confidence 999994
No 38
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.58 E-value=1.3e-15 Score=142.34 Aligned_cols=104 Identities=27% Similarity=0.394 Sum_probs=81.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC--Ce-
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA- 91 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~--~~- 91 (628)
..+.|.|+|++|++|+.++..+. +||||++.+. +.
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 65 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGL------------------------------------------SDPYVKVNLYHAKKR 65 (153)
T ss_dssp TTTEEEEEEEEEESCC------C------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------------------CCeEEEEEEEeCCeE
Confidence 57899999999999998876654 8999999984 33
Q ss_pred -eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854 92 -TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (628)
Q Consensus 92 -~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 162 (628)
...||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++.+ .+....+|++|...
T Consensus 66 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 139 (153)
T 1w15_A 66 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDF 139 (153)
T ss_dssp EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHS
T ss_pred eceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHhC
Confidence 257999999999999999999998775 367999999999997 9999999999987 33444556666543
No 39
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.7e-15 Score=135.70 Aligned_cols=104 Identities=22% Similarity=0.418 Sum_probs=88.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (628)
.+.|.|+|++|++|+.++..+ +||||++.+.+ .
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-------------------------------------------~dpyv~v~l~~~~~~~ 59 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-------------------------------------------SDPYVRMYLLPDKRRS 59 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-------------------------------------------CCEEEEEEEESCCCSS
T ss_pred CCEEEEEEEEeECCCCCCCCC-------------------------------------------CCeeEEEEEEcCCCCC
Confidence 788999999999999765332 79999999853 2
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC---CeeeEEEeccccccccCceeEEEEEccCC
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~---~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 162 (628)
...+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|+|.++..+....+|++|...
T Consensus 60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 467999999999999999999998653 358999999999875 36999999999999887788899999544
No 40
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.57 E-value=1.4e-14 Score=137.41 Aligned_cols=91 Identities=29% Similarity=0.405 Sum_probs=80.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~ 72 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGY------------------------------------------SDPFVKLWLKPDMGK 72 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETC---
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 46899999999999998876654 99999999975
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecccccc
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l 147 (628)
....+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++.++
T Consensus 73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence 3568999999999999999999998763 458999999999997 89999999999875
No 41
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=139.28 Aligned_cols=110 Identities=25% Similarity=0.453 Sum_probs=89.9
Q ss_pred eceEEEEEEEEeeCCCCC-CCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--e
Q 006854 15 LHGDLDLKIIRARRLPNM-DMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A 91 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~ 91 (628)
..+.|.|+|++|++|+.. +..+. +.+.+.+||||++.+.+ .
T Consensus 24 ~~~~L~V~v~~a~~L~~~~d~~g~------------------------------------~~~~~~~dpyv~v~l~~~~~ 67 (147)
T 2enp_A 24 LHNHLTVRVIEARDLPPPISHDGS------------------------------------RQDMAHSNPYVKICLLPDQK 67 (147)
T ss_dssp TTTEEEEEEEEEECCCCSCSSCCS------------------------------------SCTTCCCCCEEEEEEETCCS
T ss_pred CCCEEEEEEEEEeCCCCccccccc------------------------------------cccCCCCCcEEEEEEEeCCC
Confidence 467999999999999973 43331 00112399999999864 3
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEcc
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~ 160 (628)
...+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|+|.++..+.....|++|.
T Consensus 68 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~ 140 (147)
T 2enp_A 68 NSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140 (147)
T ss_dssp SCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred cceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence 467999999999999999999998753 357999999999987 899999999999998777778899984
No 42
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.54 E-value=3.9e-14 Score=146.92 Aligned_cols=125 Identities=25% Similarity=0.391 Sum_probs=101.1
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC--Cee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~--~~~ 92 (628)
..+.|.|+|++|++|+.++..+. +||||++.+. +..
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dPyv~v~l~~~~~~ 55 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGF------------------------------------------SDPYVKIYLLPDRKK 55 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSC------------------------------------------CCEEEEEECTTSTTS
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEcCCCe
Confidence 46899999999999998876665 9999999994 345
Q ss_pred eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecc-ccccc-cCceeEEEEEccCCCCCC
Q 006854 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIP-AHTIA-TGELISRWYDIIAPSGSP 166 (628)
Q Consensus 93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~-l~~l~-~~~~~~~w~~L~~~~~~~ 166 (628)
..+|++++++.||.|||+|.|.+... ...|.|+|||+|.++ +++||.+.++ +.++. .......|++|.... ..
T Consensus 56 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~-~~ 134 (296)
T 1dqv_A 56 KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG-SE 134 (296)
T ss_dssp CEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS-SC
T ss_pred eEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccccc-cc
Confidence 67999999999999999999998654 347999999999997 9999999996 44444 234567899995433 23
Q ss_pred CCCCceEEEEEEEeec
Q 006854 167 PKPGASIQLELKFTPC 182 (628)
Q Consensus 167 ~~~~g~i~l~l~y~p~ 182 (628)
....|+|.++++|.|.
T Consensus 135 ~~~~G~i~vsl~y~~~ 150 (296)
T 1dqv_A 135 KADLGELNFSLCYLPT 150 (296)
T ss_dssp CSCCCEEEEEEEEETT
T ss_pred ccccceEEEEEEeccc
Confidence 3457999999999774
No 43
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.51 E-value=1e-13 Score=127.13 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=90.3
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeE
Q 006854 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS 154 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~-~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~ 154 (628)
+|||+++.+-+.+ .||++++ ++.||+|||.|.+++..+ .+.|.|.|+|++.+. +.+||++.++|.++..+....
T Consensus 37 ~Dp~akv~FRg~k-~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~ 115 (144)
T 3l9b_A 37 ADRIAKVTFRGQS-FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVE 115 (144)
T ss_dssp EEEEEEEEETTEE-EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEE
T ss_pred CCCeEEEEEeccc-eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEE
Confidence 8999999997755 6999998 799999999999998875 567999999999988 999999999999999877777
Q ss_pred EEEEccCCCCCCCCCCceEEEEEEEeecCC
Q 006854 155 RWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (628)
Q Consensus 155 ~w~~L~~~~~~~~~~~g~i~l~l~y~p~~~ 184 (628)
-+-+|.+..+++. .++|.|+|+|.|.+.
T Consensus 116 l~~~LvD~n~~~~--~a~I~l~l~Y~pp~g 143 (144)
T 3l9b_A 116 VSDTLIDDNNAII--KTSLSMEVRYQAADG 143 (144)
T ss_dssp EEEEEECTTSCEE--EEEEEEEEEEEETTC
T ss_pred EeecccCCCCCcc--ccEEEEEEEecCCCC
Confidence 8889988877753 489999999999653
No 44
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.51 E-value=1.2e-13 Score=126.24 Aligned_cols=96 Identities=20% Similarity=0.359 Sum_probs=68.9
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCc--eeEE
Q 006854 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISR 155 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~-~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~--~~~~ 155 (628)
+||||++. .. . .+|++++ ++.||.|||+|.|.+......|.|+|||+| ++ |++||++.|+|.++.... ....
T Consensus 23 ~DPYv~v~-~~-~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~ 98 (131)
T 2cjt_A 23 FNTYVTLK-VQ-N-VKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGE 98 (131)
T ss_dssp CEEEEEEE-ET-T-EEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCCCE
T ss_pred cCeEEEEE-ec-C-EEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCccc
Confidence 89999999 22 2 3565555 699999999999999987788999999999 66 999999999999986432 1224
Q ss_pred EEEccC----CCCC----CCCCCceEEEEEEE
Q 006854 156 WYDIIA----PSGS----PPKPGASIQLELKF 179 (628)
Q Consensus 156 w~~L~~----~~~~----~~~~~g~i~l~l~y 179 (628)
|.++.- .+|+ -....+.+.+.++|
T Consensus 99 ~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 99 WLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp EEECBC----------CCSCCCCCEEEEEEEE
T ss_pred cEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 555532 2222 12234458887776
No 45
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.46 E-value=3.8e-13 Score=149.49 Aligned_cols=117 Identities=21% Similarity=0.358 Sum_probs=99.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (628)
..|+|.|+|++|++|++++..+. +||||++.+++.. .
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~------------------------------------------sdpyv~v~~~~~~-~ 421 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGK------------------------------------------SNPYCEISMGSQS-Y 421 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTEE-E
T ss_pred CCceEEEEeceeecCCCCCCCCC------------------------------------------CCeEEEEEECCee-c
Confidence 45789999999999998876665 9999999997754 7
Q ss_pred eeccccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCC-CeeeEEEeccccccccCce----eEEEEEccCCCCCCCC
Q 006854 95 RTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL----ISRWYDIIAPSGSPPK 168 (628)
Q Consensus 95 kT~v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~----~~~w~~L~~~~~~~~~ 168 (628)
+|++++++.||.|||+|.|.+.... ..|.|+|||+|.++ +++||.+.+++.++..+.. ...|++|...
T Consensus 422 ~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------ 495 (510)
T 3jzy_A 422 TTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------ 495 (510)
T ss_dssp ECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------
T ss_pred cCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC------
Confidence 9999999999999999999987654 67999999999998 9999999999999986544 7789999422
Q ss_pred CCceEEEEEEEe
Q 006854 169 PGASIQLELKFT 180 (628)
Q Consensus 169 ~~g~i~l~l~y~ 180 (628)
..|+|++++.+.
T Consensus 496 ~~G~i~l~~~l~ 507 (510)
T 3jzy_A 496 PTGEVWVRFDLQ 507 (510)
T ss_dssp SSCEEEEEEEEE
T ss_pred CCceEEEEEEEE
Confidence 458998888754
No 46
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.43 E-value=7.2e-13 Score=126.28 Aligned_cols=66 Identities=23% Similarity=0.404 Sum_probs=57.3
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEecccccccc
Q 006854 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (628)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~-~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~ 149 (628)
+||||++. .. ..||++++ ++.||.|||+|.|.+......|.|+|||+| ++ |++||++.|+|.++..
T Consensus 32 ~DPYV~v~-~~--~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 32 FNTYVTLK-VQ--NVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp CEEEEEEE-ET--TEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEEEEEEEEGGGSCB
T ss_pred CCeEEEEE-ec--ceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceEEEEEEEHHHhcc
Confidence 89999999 22 24676665 599999999999999988788999999999 65 9999999999999864
No 47
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.40 E-value=1.7e-12 Score=144.91 Aligned_cols=106 Identities=21% Similarity=0.326 Sum_probs=90.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeee
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~k 95 (628)
.|.|.|+|++|++|+. |..+. +||||+|.+++.. .|
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~------------------------------------------sDPYV~v~l~~~~-~k 428 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTA------------------------------------------TDAYLKVFFGGQE-FR 428 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSC------------------------------------------CCEEEEEEETTEE-EE
T ss_pred ccEEEEEEEEccCCCc-ccCCC------------------------------------------cCeEEEEEECCEe-ee
Confidence 4789999999999997 76665 9999999998865 89
Q ss_pred eccccCCCCCeEeeEEEEEec--CCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCce
Q 006854 96 TRVLKNSQEPVWNEHFNIPLA--HPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS 172 (628)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~--~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~ 172 (628)
|++++++.||+|||+|.|.+. .....|.|+|||+|.++ |++||.+.++|. .| ....|++| . .|+
T Consensus 429 Tkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l-~--------~G~ 495 (540)
T 3nsj_A 429 TGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SG-FHEVTCEL-N--------HGR 495 (540)
T ss_dssp CCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SE-EEEEEEEC-S--------SSE
T ss_pred eeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CC-cEEEEEEc-C--------CeE
Confidence 999999999999999999853 35778999999999997 899999999987 34 36789987 2 288
Q ss_pred EEEEEE
Q 006854 173 IQLELK 178 (628)
Q Consensus 173 i~l~l~ 178 (628)
|++++.
T Consensus 496 l~~~~~ 501 (540)
T 3nsj_A 496 VKFSYH 501 (540)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888876
No 48
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.38 E-value=2.2e-12 Score=146.72 Aligned_cols=120 Identities=25% Similarity=0.471 Sum_probs=100.4
Q ss_pred eceEEEEEEEEeeCCCCCCC--CchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--
Q 006854 15 LHGDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-- 90 (628)
..++|.|+|++|++|+.++. .+ .+||||+|.+.+
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~------------------------------------------~~DPYV~V~l~g~~ 532 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNS------------------------------------------IVDPKVIVEIHGVG 532 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSS------------------------------------------CCCEEEEEEEESSG
T ss_pred cceEEEEEEEEcCCCCcccccccC------------------------------------------CCCcEEEEEEecCC
Confidence 56899999999999997653 22 299999999844
Q ss_pred --eeeeeeccccCC-CCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854 91 --ATVARTRVLKNS-QEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (628)
Q Consensus 91 --~~~~kT~v~~~~-~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~ 165 (628)
..+.||++++++ .||+|||+|.|.+..+ ...|.|+|||+|.++ +++||++.+||..|..|. +|++|.+..|.
T Consensus 533 ~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~ 609 (624)
T 1djx_A 533 RDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGD 609 (624)
T ss_dssp GGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSC
T ss_pred CCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcC
Confidence 345799999997 9999999999998876 367999999999997 999999999999998763 69999877766
Q ss_pred CCCCCceEEEEEEEe
Q 006854 166 PPKPGASIQLELKFT 180 (628)
Q Consensus 166 ~~~~~g~i~l~l~y~ 180 (628)
+. ..+.|.++++|.
T Consensus 610 ~~-~~~~L~v~i~~~ 623 (624)
T 1djx_A 610 QH-PSATLFVKISIQ 623 (624)
T ss_dssp EE-EEEEEEEEEEEE
T ss_pred CC-CceEEEEEEEEE
Confidence 43 357888888875
No 49
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.38 E-value=3.8e-14 Score=156.98 Aligned_cols=125 Identities=25% Similarity=0.437 Sum_probs=23.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (628)
..+.|.|+|++|++|+++ .||||++.+++....
T Consensus 9 ~~~~L~V~VieAk~L~~~-----------------------------------------------ddpYv~v~l~~~~~~ 41 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPK-----------------------------------------------KRYYCELCLDDMLYA 41 (483)
T ss_dssp EEECC---------------------------------------------------------------------------
T ss_pred eccEEEEEEEEcCCcCCC-----------------------------------------------CCCeEEEEECCeEEe
Confidence 357899999999999853 379999999887667
Q ss_pred eeccccCC---CCCeEeeEEEEEecCCCceEEEEEEEc-CC---CC-CeeeEEEeccccccccCceeEEEEEccCCCC--
Q 006854 95 RTRVLKNS---QEPVWNEHFNIPLAHPLSNLEIQVKDD-DV---FG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG-- 164 (628)
Q Consensus 95 kT~v~~~~---~~P~wne~f~~~~~~~~~~l~i~v~d~-d~---~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~-- 164 (628)
||++++++ .||+|||+|.|.+.+....|.|+|||. |. ++ +++||.+.|++.++..+...++||+|..+.+
T Consensus 42 kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~ 121 (483)
T 3bxj_A 42 RTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSG 121 (483)
T ss_dssp -----------------CCEECC------------------------------------------CCEECC---------
T ss_pred eeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCcc
Confidence 99999999 999999999999766567899999994 42 44 8999999999999998888899999965442
Q ss_pred -------------------CCCCCCceEEEEEEEeecCCCC
Q 006854 165 -------------------SPPKPGASIQLELKFTPCDKNP 186 (628)
Q Consensus 165 -------------------~~~~~~g~i~l~l~y~p~~~~~ 186 (628)
+..+..|+|+|+++|.+....|
T Consensus 122 ~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~vlP 162 (483)
T 3bxj_A 122 GSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILP 162 (483)
T ss_dssp -----------------------------CEEEEEECCBCC
T ss_pred ccccccccccccccccccccCCCCCceEEEEEEeeeeeecc
Confidence 1223569999999999864333
No 50
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.37 E-value=2.4e-12 Score=132.16 Aligned_cols=104 Identities=27% Similarity=0.447 Sum_probs=87.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..+.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 148 ~~~~l~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~ 185 (284)
T 2r83_A 148 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 185 (284)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred cCCceEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEeCCcE
Confidence 36789999999999998876664 99999999843
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccc------------cCceeE
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA------------TGELIS 154 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~------------~~~~~~ 154 (628)
..+.+|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++..+. .+....
T Consensus 186 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~ 265 (284)
T 2r83_A 186 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 265 (284)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEE
T ss_pred eeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchh
Confidence 2457999999999999999999998765 346999999999998 999999999997632 345677
Q ss_pred EEEEcc
Q 006854 155 RWYDII 160 (628)
Q Consensus 155 ~w~~L~ 160 (628)
+|++|.
T Consensus 266 ~W~~L~ 271 (284)
T 2r83_A 266 QWHTLQ 271 (284)
T ss_dssp EEEECB
T ss_pred eeeecC
Confidence 899984
No 51
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.33 E-value=3e-12 Score=147.29 Aligned_cols=103 Identities=27% Similarity=0.467 Sum_probs=91.7
Q ss_pred eceEEEEEEEEeeCCCC---CCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-
Q 006854 15 LHGDLDLKIIRARRLPN---MDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~- 90 (628)
..+.|.|+|++|++|+. +|..+. +||||+|.+.+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~------------------------------------------sDPYV~V~l~~~ 53 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTT 53 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCC------------------------------------------CCEEEEEECTTS
T ss_pred CccEEEEEEEEEECCCCccccCCCCC------------------------------------------cCeEEEEEEecC
Confidence 46799999999999997 554443 99999999985
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEc
Q 006854 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (628)
Q Consensus 91 -~~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L 159 (628)
..+.||++++++.||+|||+|.|.+... ...|.|+|||+|.+++++||++.|+|.++..+.....|++|
T Consensus 54 ~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L 124 (749)
T 1cjy_A 54 PDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 124 (749)
T ss_dssp TTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEE
T ss_pred CCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEec
Confidence 3567999999999999999999999874 56799999999998899999999999999988888999999
No 52
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.27 E-value=1.7e-12 Score=134.61 Aligned_cols=108 Identities=29% Similarity=0.456 Sum_probs=88.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (628)
.|.|.|+|++|++|+.++..+. +||||++.+.+ .
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~ 188 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGF------------------------------------------SDPYVKASLISEGRRL 188 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEECCCTTCCTT
T ss_pred cceeEEEEEEeecCCccCCCCC------------------------------------------CCcEEEEEEEeCCcCc
Confidence 5899999999999998876665 89999999863 3
Q ss_pred eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (628)
Q Consensus 92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~ 166 (628)
.+.||++++++.||.|||.|.|.+... ...|.|+|||++.++ +++||.+.|++..+.. ....+|+.|+...+++
T Consensus 189 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~~~~~ 266 (296)
T 1dqv_A 189 KKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLANPRKP 266 (296)
T ss_dssp SCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSSSSSC
T ss_pred cceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhCCCCc
Confidence 457999999999999999999998765 346999999999998 9999999999987643 1335666665544443
No 53
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.12 E-value=1.9e-10 Score=132.32 Aligned_cols=109 Identities=22% Similarity=0.401 Sum_probs=93.7
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-
Q 006854 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (628)
Q Consensus 12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~- 90 (628)
..+..+.|.|+|++|++|++++..+. +||||++.+.+
T Consensus 167 ~~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDPyvkv~l~p~ 204 (674)
T 3pfq_A 167 AHIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPD 204 (674)
T ss_dssp EEECSSEEEEEEEEEESCCCCSTTSS------------------------------------------CCEEEEEEEESC
T ss_pred ceeccceeeeeeecccccCCCCcccc------------------------------------------cCcccccccccC
Confidence 45668899999999999999887765 99999999832
Q ss_pred ---eeeeeeccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCC
Q 006854 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (628)
Q Consensus 91 ---~~~~kT~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 163 (628)
..+.+|++++++.||.|||+|.|.+... ...|.|+|||+|.++ +++||.+.+++.++.... ..+|+.|....
T Consensus 205 ~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~ 282 (674)
T 3pfq_A 205 PKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE 282 (674)
T ss_dssp SSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCTT
T ss_pred ccccccccccccccccCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeecccc
Confidence 3457999999999999999999998754 456999999999998 999999999999998654 58999997543
No 54
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=98.93 E-value=2.8e-09 Score=124.59 Aligned_cols=95 Identities=23% Similarity=0.406 Sum_probs=76.5
Q ss_pred CCcEEEEEECC-----eeeeeeccccC-CCCCeEee-EEEEE-ecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccC
Q 006854 80 SDPYVTVVVPQ-----ATVARTRVLKN-SQEPVWNE-HFNIP-LAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG 150 (628)
Q Consensus 80 ~dpyv~v~l~~-----~~~~kT~v~~~-~~~P~wne-~f~~~-~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~ 150 (628)
+||||+|.+.+ ..+.||+++++ +.||+||| +|.|. +..+ ...|.|+|||+| +++||++.+||..|..|
T Consensus 742 ~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~G 818 (885)
T 3ohm_B 742 VGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSG 818 (885)
T ss_dssp CCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCE
T ss_pred CCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCC
Confidence 89999999854 23469999986 59999999 69998 6544 467999999987 89999999999999877
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEee
Q 006854 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (628)
Q Consensus 151 ~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p 181 (628)
. ++++|.+..|.+. ..+.|.+.+.+..
T Consensus 819 y---R~vpL~~~~g~~l-~~atLfv~i~~~~ 845 (885)
T 3ohm_B 819 Y---HYVCLRNEANQPL-CLPALLIYTEASD 845 (885)
T ss_dssp E---EEEEEECTTSCEE-EEEEEEEEEEEEE
T ss_pred c---eEEEecCCCCCcc-CceEEEEEEEEEe
Confidence 3 5789977766532 3478888888775
No 55
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=98.93 E-value=3.6e-09 Score=123.37 Aligned_cols=113 Identities=22% Similarity=0.387 Sum_probs=89.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (628)
Q Consensus 15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (628)
..++|.|+|++|++|+.. . +||||+|.+.+
T Consensus 676 ~~~~L~V~Visa~~L~~~----~------------------------------------------~DPYV~V~l~g~p~d 709 (799)
T 2zkm_X 676 VATTLSITVISGQFLSER----S------------------------------------------VRTYVEVELFGLPGD 709 (799)
T ss_dssp TCEEEEEEEEEEESCCSS----C------------------------------------------CCEEEEEEEECCTTS
T ss_pred eeeeEEEEEEeccccCcc----C------------------------------------------CCcEEEEEEEecCCC
Confidence 467899999999999841 1 89999999843
Q ss_pred -eeeeeec-cccC-CCCCeEee-EEEE-EecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCC
Q 006854 91 -ATVARTR-VLKN-SQEPVWNE-HFNI-PLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (628)
Q Consensus 91 -~~~~kT~-v~~~-~~~P~wne-~f~~-~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~ 164 (628)
..+.||+ ++++ +.||+||| +|.| .+..+ ...|.|.|||++ +++||.+.|||..|..| -+|++|.+..|
T Consensus 710 ~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G---~r~v~L~~~~g 783 (799)
T 2zkm_X 710 PKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSG---YHHLCLHSESN 783 (799)
T ss_dssp CCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCE---EEEEEEECTTC
T ss_pred cccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCC---cEEEeccCCCC
Confidence 2357999 7765 69999999 6999 77654 457899999987 89999999999999876 46899977666
Q ss_pred CCCCCCceEEEEEEEe
Q 006854 165 SPPKPGASIQLELKFT 180 (628)
Q Consensus 165 ~~~~~~g~i~l~l~y~ 180 (628)
.+. ..+.|.+++.+.
T Consensus 784 ~~~-~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 784 MPL-TMPALFIFLEMK 798 (799)
T ss_dssp CEE-EEEEEEEEEEEE
T ss_pred CCC-CceEEEEEEEEE
Confidence 533 247777877764
No 56
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=98.92 E-value=4.7e-09 Score=122.02 Aligned_cols=113 Identities=25% Similarity=0.420 Sum_probs=90.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (628)
Q Consensus 16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (628)
.++|.|+|++|++|+.. . +||||+|.+.+ .
T Consensus 649 ~~~L~V~Visaq~L~~~----~------------------------------------------~DPYV~V~l~g~p~d~ 682 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----Q------------------------------------------ISSYVEVEMYGLPTDT 682 (816)
T ss_dssp CEEEEEEEEEEECCCSS----C------------------------------------------CCEEEEEEEESSGGGC
T ss_pred ceEEEEEEEEcccCCCC----C------------------------------------------CCCeEEEEEeCCCccc
Confidence 57899999999999842 1 89999999854 1
Q ss_pred --eeeeeccccC-CCCCeEeeE-EEEE-ecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854 92 --TVARTRVLKN-SQEPVWNEH-FNIP-LAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (628)
Q Consensus 92 --~~~kT~v~~~-~~~P~wne~-f~~~-~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~ 165 (628)
.+.||+++++ +.||+|||+ |.|. +..+ ...|.|+|||++ +++||++.+||..|..|. ++++|.+..|.
T Consensus 683 ~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~ 756 (816)
T 3qr0_A 683 VRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESNR 756 (816)
T ss_dssp EEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCEE---EEEEEECTTSC
T ss_pred ccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCCC
Confidence 4579999986 699999998 9998 6554 467899999985 799999999999999873 57999877766
Q ss_pred CCCCCceEEEEEEEee
Q 006854 166 PPKPGASIQLELKFTP 181 (628)
Q Consensus 166 ~~~~~g~i~l~l~y~p 181 (628)
+. ..+.|.+.+.+..
T Consensus 757 ~~-~~atLfv~i~~~~ 771 (816)
T 3qr0_A 757 PL-GLASVFAHIVAKD 771 (816)
T ss_dssp EE-EEEEEEEEEEEEE
T ss_pred CC-CceEEEEEEEEEe
Confidence 43 2367888887665
No 57
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=98.87 E-value=3.1e-09 Score=116.64 Aligned_cols=150 Identities=18% Similarity=0.036 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~ 320 (628)
..+...++++|.+|+++|+|++- ||. +. ..+.++|+.|++|||+|+||+ +...+...+.....
T Consensus 257 ~~i~~~~~~lI~~A~~~I~I~tp------Yf~--p~--------~~~~~aL~~Aa~rGV~VrIi~-~~~~and~y~~~~~ 319 (458)
T 3hsi_A 257 NELNQVIEDLFLQVQKKLVICTP------YFN--FP--------RTLQHKIATLLENGKRVEIIV-GDKVANDFYIPPEQ 319 (458)
T ss_dssp CHHHHHHHHHHHTCSSEEEEECS------SSC--CC--------HHHHHHHHHHHTTTCEEEEEE-ECGGGSTTCCCTTS
T ss_pred hHHHHHHHHHHHhcccEEEEEEe------ccC--CC--------HHHHHHHHHHHHCCCeEEEEE-CCccccCCccCCcc
Confidence 57888999999999999999843 333 11 579999999999999999997 77632211000000
Q ss_pred CcccCCh-HHHH-----------hhhccCC-ceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEE
Q 006854 321 GVMATHD-EETK-----------KFFKHSS-VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF 387 (628)
Q Consensus 321 ~~~~~~~-~~~~-----------~~l~~~g-v~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vaf 387 (628)
.++.... ..+. +.+..+| +.+... .+. .+..|.|.+|||++ +++
T Consensus 320 ~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~-~~~--------------~~~lHaK~~vvD~~--------~~~ 376 (458)
T 3hsi_A 320 PFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLW-RDG--------------DNTYHLKGVWVDDR--------YIL 376 (458)
T ss_dssp CCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEE-CBT--------------TBEECCCEEEETTT--------EEE
T ss_pred hhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEE-ecC--------------CCceeEEEEEECCe--------EEE
Confidence 0100000 1111 2344566 333321 111 13459999999998 999
Q ss_pred EccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH---HHHHHHHHHHHHHhhhccc
Q 006854 388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP---AAYDVLINFEQRWRKATKL 462 (628)
Q Consensus 388 vGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp---av~~l~~~F~~rW~~~~~~ 462 (628)
+|+.|+...-+. -=..+.+.|.+| .+.++.+.|.+.|..+...
T Consensus 377 vGS~N~d~RS~~--------------------------------lN~E~~~~i~~~~~~l~~~l~~~f~~~~~~s~~v 422 (458)
T 3hsi_A 377 LTGNNLNPRAWR--------------------------------LDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKVL 422 (458)
T ss_dssp EECCCCSHHHHH--------------------------------TCEEEEEEEECTTCSSHHHHHHHHHHHHTTEEEC
T ss_pred ecCCCCCcchhh--------------------------------hCceeEEEEeCCcHHHHHHHHHHHHHHHHhCeEc
Confidence 999999873221 014788899998 7999999999999876543
No 58
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=98.81 E-value=4.7e-08 Score=108.73 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=93.6
Q ss_pred chHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCC
Q 006854 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (628)
Q Consensus 242 ~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~ 321 (628)
.....++++|.+|+++|+|++--|.| |+. +.. . . ...+.++|+.|++|||+|+||+ +..............
T Consensus 314 ~~~~~~~~~I~~A~~~I~I~tq~~~p--yf~--p~~-~-~--~~~i~~aL~~Aa~rGV~VrIl~-~~~~~~~~~~~a~~~ 384 (506)
T 1v0w_A 314 PEESALRALVASAKGHIEISQQDLNA--TCP--PLP-R-Y--DIRLYDALAAKMAAGVKVRIVV-SDPANRGAVGSGGYS 384 (506)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCSSC--CTT--TSC-S-C--CHHHHHHHHHHHHTTCEEEEEE-CCGGGCC------CC
T ss_pred cHHHHHHHHHhCcCcEEEEEeccccc--ccc--Ccc-c-c--hHHHHHHHHHHHhCCCcEEEEe-CCCCchHHHHHhHHH
Confidence 57889999999999999999632222 222 110 0 0 1589999999999999999997 655322111111111
Q ss_pred cccCChHH-----HHhhhccCC-----------ceEEeccC---CCCCccchhhhccccccccCcceEEEEecCCCCCCc
Q 006854 322 VMATHDEE-----TKKFFKHSS-----------VNCVLAPR---YASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNR 382 (628)
Q Consensus 322 ~~~~~~~~-----~~~~l~~~g-----------v~~~~~~~---~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~ 382 (628)
......+. ....+..+| +++..... +.. ..+.....|.|++|||++
T Consensus 385 ~~~~L~~~~~~l~~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~~~~---------~~~~~~~lHaK~~vvD~~------ 449 (506)
T 1v0w_A 385 QIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKW---------ADGHPYAQHHKLVSVDSS------ 449 (506)
T ss_dssp CCSCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSSSSC---------TTSCCCCBCCEEEEETTT------
T ss_pred HHHHHHHhhhhhcccchhcccccchhccccccceeeeeccccCcccc---------ccCccccceEEEEEECCc------
Confidence 11000000 000011112 23310000 000 001123579999999998
Q ss_pred ceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHH-Hhhhc
Q 006854 383 KITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR-WRKAT 460 (628)
Q Consensus 383 ~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~r-W~~~~ 460 (628)
++++|+.|+.. | .++++.+.|++| .+.++...|.++ |+.+.
T Consensus 450 --~~~vGS~N~d~-r----------------------------------S~~E~~l~i~~~~~a~~l~~~f~~~~w~~s~ 492 (506)
T 1v0w_A 450 --TFYIGSKNLYP-S----------------------------------WLQDFGYIVESPEAAKQLDAKLLDPQWKYSQ 492 (506)
T ss_dssp --EEEEESCCSSC-C----------------------------------CSBCEEEEEECHHHHHHHHHHTHHHHHHHHG
T ss_pred --EEEEeCCCCCC-c----------------------------------chhhceeEecCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999965 2 124889999997 788999999975 77554
Q ss_pred c
Q 006854 461 K 461 (628)
Q Consensus 461 ~ 461 (628)
.
T Consensus 493 ~ 493 (506)
T 1v0w_A 493 E 493 (506)
T ss_dssp G
T ss_pred c
Confidence 3
No 59
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.77 E-value=1.1e-07 Score=84.71 Aligned_cols=89 Identities=16% Similarity=0.345 Sum_probs=74.0
Q ss_pred CCcEEEEEECCeee---eee-ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccc-----cC
Q 006854 80 SDPYVTVVVPQATV---ART-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (628)
Q Consensus 80 ~dpyv~v~l~~~~~---~kT-~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~-----~~ 150 (628)
.||||.|.+..... .+| ..+++|..|+|||+|.-.+.. ...|.|.|++... ++++.+.|++.+|. .+
T Consensus 27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~ 102 (126)
T 1yrk_A 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNN 102 (126)
T ss_dssp CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTT
T ss_pred CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 89999999976443 376 667779999999999999875 7789999997665 99999999999998 34
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEe
Q 006854 151 ELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (628)
Q Consensus 151 ~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~ 180 (628)
...+-|++| . +.|+|++.+.|.
T Consensus 103 g~~e~WvdL-e-------P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 103 GKAEFWLDL-Q-------PQAKVLMSVQYF 124 (126)
T ss_dssp TEEEEEEEC-B-------SSCEEEEEEEEE
T ss_pred CceEEEEec-c-------cCcEEEEEEEEe
Confidence 566889999 3 359999999975
No 60
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.69 E-value=9.2e-08 Score=86.40 Aligned_cols=90 Identities=18% Similarity=0.396 Sum_probs=74.9
Q ss_pred CCcEEEEEECCeee---eee-ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccc-----cC
Q 006854 80 SDPYVTVVVPQATV---ART-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (628)
Q Consensus 80 ~dpyv~v~l~~~~~---~kT-~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~-----~~ 150 (628)
.||||.|.+..... .+| ..+++|..|+|||+|.-.+.. ...|.|.|++... ++++.+.|++.+|. .+
T Consensus 32 lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~ 107 (138)
T 2enj_A 32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKNV---DLISETTVELYSLAERCRKNN 107 (138)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred CCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 89999999977443 788 667779999999999998875 6789999996554 89999999999998 34
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEee
Q 006854 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (628)
Q Consensus 151 ~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p 181 (628)
...+-|++| . +.|+|++.+.|.-
T Consensus 108 g~~e~WvdL-e-------P~Gkl~v~i~~~~ 130 (138)
T 2enj_A 108 GKTEIWLEL-K-------PQGRMLMNARYFL 130 (138)
T ss_dssp TCEEEEEEC-B-------SSCEEEEEEEECC
T ss_pred CceEEEEec-c-------cCcEEEEEEEEEE
Confidence 566889999 3 3599999999864
No 61
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=97.39 E-value=0.00026 Score=80.74 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=96.5
Q ss_pred CCCccCCcchHHHHHHHHHhccc----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCC
Q 006854 234 GGKLYKPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309 (628)
Q Consensus 234 ~g~~y~~~~~f~~l~~aI~~Ak~----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~ 309 (628)
.||...+..+...+..+|.+|++ +|+|.+ |. |. | ..+.++|..|+++||+|+||+ .+.
T Consensus 511 ~sP~~~~~~i~~~i~~eI~~Ak~G~~a~I~ik~----n~--l~--D---------~~ii~aL~~As~~GV~V~LIV-RGi 572 (705)
T 2o8r_A 511 VARYNMGEAITNLIEREIENVKRGKRGYMLLKM----NG--LQ--D---------KNVITQLYRASEAGVEIDLIV-RGI 572 (705)
T ss_dssp ETTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEE----SC--BC--C---------HHHHHHHHHHHHTTCEEEEEE-SSC
T ss_pred ECCchHHHHHHHHHHHHHHHHhcCCCCEEEEEc----CC--CC--C---------HHHHHHHHHHHHCCCeEEEEE-ccc
Confidence 38888888899999999999998 999873 31 11 1 589999999999999999998 555
Q ss_pred CccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEE---ecCCCCCCcceEE
Q 006854 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLV---DTQASGNNRKITA 386 (628)
Q Consensus 310 gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVV---Dg~~~~~~~~~va 386 (628)
-+.. + |. . ...++.|. .+-+. ++ .|-|+.+. |+. .+
T Consensus 573 C~L~-P-----gv---------~--~sdni~V~---Sivgr---~L----------eh~RIy~f~~gd~~--------~~ 611 (705)
T 2o8r_A 573 CCLV-P-----DM---------P--QSRNIRVT---RLVDM---YL----------EHSRIWCFHNGGKE--------EV 611 (705)
T ss_dssp BCSC-C-----SS---------G--GGTTEEEE---ECCSS---SE----------ECCCEEEECGGGSC--------EE
T ss_pred cccC-C-----CC---------C--CCCCeEEE---eeHHH---HH----------hcCEEEEEECCCCc--------EE
Confidence 3221 1 10 0 12345554 11111 11 26699998 554 99
Q ss_pred EEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhccc
Q 006854 387 FIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKL 462 (628)
Q Consensus 387 fvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~~ 462 (628)
|+|+.|+....++- -..+.+.|..| .+++|...|...|....+.
T Consensus 612 ~IGSAn~m~Rnl~~--------------------------------r~Ev~~~i~d~~~~~~l~~i~~~~l~d~~~a 656 (705)
T 2o8r_A 612 FISSADWMKRNLYN--------------------------------RIETACPVLDPTLRREIIDILEIQLRDNIKA 656 (705)
T ss_dssp EEESCCBCHHHHHT--------------------------------SBCEEEECCSHHHHHHHHHHHHHHHHCCSSC
T ss_pred EEeccccchhhhhh--------------------------------eeEEEEEEcCHHHHHHHHHHHHHhhhhhhce
Confidence 99999988832221 13788888887 7788999999999876553
No 62
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=97.23 E-value=0.00046 Score=63.45 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 560 ~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
.++.+.++.+|.+|+++|+|+++|| ++ ..|.++|.+|.++|.++||++
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~-~~-----------------~~i~~aL~~a~~rGV~Vril~ 60 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSF-TA-----------------PDIMKALVAAKKRGVDVKIVI 60 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSB-CC-----------------HHHHHHHHHHHHTTCEEEEEE
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEe-CC-----------------HHHHHHHHHHHHCCCEEEEEE
Confidence 4689999999999999999999999 32 269999999999999999876
No 63
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=97.05 E-value=0.00062 Score=65.88 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 561 ~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
+....++++|.+|+++|+|+. |++++. +|+++|++|+++|+++||++
T Consensus 46 ~~~~~ll~~I~~A~~sI~i~~-y~~~~~-----------------~i~~aL~~aa~rGV~Vrii~ 92 (196)
T 4ggj_A 46 SSLSRLLRALLAARSSLELCL-FAFSSP-----------------QLGRAVQLLHQRGVRVRVIT 92 (196)
T ss_dssp CHHHHHHHHHHTCSSEEEEEE-SCBCCH-----------------HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhheEEEEEE-EEeCCH-----------------HHHHHHHHHHHcCCcEEEEE
Confidence 456889999999999999998 555543 69999999999999999986
No 64
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=96.97 E-value=0.00082 Score=65.74 Aligned_cols=48 Identities=17% Similarity=0.062 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 560 ~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
....+.++.+|.+|+++|+|+. |++++. +|+++|++|+++|+++||++
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~-Y~~~~~-----------------~I~~aL~~Aa~RGV~VRii~ 104 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAI-YTFTSL-----------------FLADSIKRALQRGVIIRIIS 104 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEC-SCBCCH-----------------HHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHHhhhEEEEEE-EEeCCH-----------------HHHHHHHHHHHcCCeEEEEE
Confidence 4566788999999999999997 666654 79999999999999999985
No 65
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=96.93 E-value=0.001 Score=76.02 Aligned_cols=132 Identities=18% Similarity=0.204 Sum_probs=82.5
Q ss_pred HHHHHHHHHhccc----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccC
Q 006854 244 WEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKT 319 (628)
Q Consensus 244 f~~l~~aI~~Ak~----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~ 319 (628)
...+.+.|..|++ +|+|.+..+ | + ..+.++|.+||++||+|+||+ ++.-+. .++.
T Consensus 514 ~~~I~~ei~~A~~g~~~~I~i~~~~l-p-------D---------~~ii~AL~~Aa~rGV~VrLiv-rg~c~l-~pgv-- 572 (687)
T 1xdp_A 514 YEMVDREIANAQQGLPSGITLKLNNL-V-------D---------KGLVDRLYAASSSGVPVNLLV-RGMCSL-IPNL-- 572 (687)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEESCB-C-------C---------HHHHHHHHHHHHTTCCEEEEE-SSCBCB-CTTC--
T ss_pred HHHHHHHHHHHHcCCCCEEEEEeCCC-C-------C---------HHHHHHHHHHHHCCCEEEEEE-eccccc-CCCC--
Confidence 3445556777886 798875522 1 1 589999999999999999998 654221 1110
Q ss_pred CCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCC
Q 006854 320 PGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD 399 (628)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d 399 (628)
+| ...++.+. .+-+. + . .|-|+...... +...+|+|+.|+....++
T Consensus 573 p~-------------~sdni~V~---s~~~r---~---------L-eh~rI~~f~~~-----dd~~~~IGSAN~d~Rsl~ 618 (687)
T 1xdp_A 573 EG-------------ISDNIRAI---SIVDR---Y---------L-EHDRVYIFENG-----GDKKVYLSSADWMTRNID 618 (687)
T ss_dssp TT-------------TSTTEEEE---EECSS---S---------E-ECCCEEEECGG-----GSCEEEEESCCBSHHHHH
T ss_pred CC-------------CCCCEEEE---EehhH---H---------h-hCCeEEEEcCC-----CCCEEEEEcCccchhhhh
Confidence 00 01234443 11111 1 1 25689988431 112999999999873222
Q ss_pred CCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhccc
Q 006854 400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKL 462 (628)
Q Consensus 400 ~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~~ 462 (628)
. =..+.+.|..| .+++|...|...|....+.
T Consensus 619 ~--------------------------------n~Ev~~~I~d~~~~~~l~~~f~~~l~d~~~a 650 (687)
T 1xdp_A 619 Y--------------------------------RIEVATPLLDPRLKQRVLDIIDILFSDTVKA 650 (687)
T ss_dssp S--------------------------------EEEEEEECCSHHHHHHHHHHHHHHHTCCSSE
T ss_pred h--------------------------------heeeeEEecCHHHHHHHHHHHHHhhcccccc
Confidence 1 14678888885 7788999999999876443
No 66
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=94.57 E-value=0.02 Score=60.16 Aligned_cols=48 Identities=25% Similarity=0.185 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEE
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILv 305 (628)
+.+...+.+.|.+|+++|++..|. + . . ..+.+.|.++++|||+|++|+
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~--~--~-l------------~~l~~~L~~a~~RGV~Vrvi~ 165 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPS--E--F-F------------ETIREDLIKTLERGVTVSLYI 165 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECH--H--H-H------------HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhhheEEEEEeCH--H--H-H------------HHHHHHHHHHHhCCCEEEEEE
Confidence 568999999999999999998651 1 1 1 468899999999999999996
No 67
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=93.15 E-value=0.081 Score=52.45 Aligned_cols=50 Identities=24% Similarity=0.125 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEec
Q 006854 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (628)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD 307 (628)
+.....+.+.|++|+++|++..|. +. -..|.+.|.+|++|||.|+|+++.
T Consensus 9 e~Ii~r~~e~I~~A~~el~lsi~~----------e~-------l~~l~~~L~~A~~rGV~V~liv~~ 58 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVVTPS----------EF-------FETIREDLIKTLERGVTVSLYIDK 58 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECG----------GG-------HHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHhhhEEEEEeCH----------HH-------HHHHHHHHHHHHHCCCEEEEEEcC
Confidence 568899999999999999997661 11 157999999999999999999954
No 68
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=83.87 E-value=9.8 Score=36.98 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=34.2
Q ss_pred eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCC
Q 006854 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDV 131 (628)
Q Consensus 91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~ 131 (628)
...++|.|...+.+|.|+|++.+.++.. ...|.|++++...
T Consensus 76 ~se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 76 ISEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp BSCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred ceeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 3457999999999999999999999886 4568999987654
No 69
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=83.52 E-value=6.5 Score=36.21 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=69.8
Q ss_pred cEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC--------CceEEEEEEEcCCCCCeeeEEEecccccccc-Cce
Q 006854 82 PYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GEL 152 (628)
Q Consensus 82 pyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~--------~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~-~~~ 152 (628)
.||.+.+-......|.+.. ..+|.+|-+-.+.+.-. ...+.+++..........||.+.|+|.++.. .+.
T Consensus 44 tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~~ 122 (156)
T 2yrb_A 44 TFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILEKSGR 122 (156)
T ss_dssp EEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHHCCSC
T ss_pred EEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhCcCCc
Confidence 4666666565545566655 88999998888877543 3468888888654336899999999999884 344
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEee
Q 006854 153 ISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (628)
Q Consensus 153 ~~~w~~L~~~~~~~~~~~g~i~l~l~y~p 181 (628)
+.+-.+|.+..+. ...-|.|.+.|+...
T Consensus 123 i~g~~~L~g~~g~-~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 123 IFCTASLIGTKGD-IPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEEECBSSSC-CTTSEEEEEEEEEEE
T ss_pred eEEEEEEEcCCCC-cceEEEEEEEEEEec
Confidence 6667788776552 125699999999654
No 70
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=71.26 E-value=4.8 Score=41.84 Aligned_cols=49 Identities=4% Similarity=-0.010 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR 625 (628)
Q Consensus 559 e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i 625 (628)
...|.+....+|.+|++.||+..++.. ..++...|.+|.++|.+++|++
T Consensus 117 ~~~I~~ri~eli~~A~~eI~i~~~~~~------------------l~~l~~~L~~a~~RGV~Vrvi~ 165 (342)
T 3qph_A 117 FDEAIEMFRESLYSAKNEVIVVTPSEF------------------FETIREDLIKTLERGVTVSLYI 165 (342)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECHHH------------------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhhheEEEEEeCHHH------------------HHHHHHHHHHHHhCCCEEEEEE
Confidence 467999999999999999999875432 1368889999999999999986
No 71
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=61.78 E-value=29 Score=40.90 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=43.4
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeEeeEEEEEecC----CCceEEEEEEEcCCC-------------CCeee
Q 006854 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVF-------------GAQII 137 (628)
Q Consensus 80 ~dpyv~v~l--~~~~---~~kT~v~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~d~~-------------~~~~i 137 (628)
.+-||++.+ ++.. ...|+.+....+|.|||.++|++.- ..+.|.|+||+...- .+..+
T Consensus 235 ~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~l 314 (940)
T 2wxf_A 235 MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPI 314 (940)
T ss_dssp CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC----------------CEEE
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEecCCccCccccccccccccceE
Confidence 567877765 3321 1244444457789999998887543 267799999985321 14588
Q ss_pred EEEeccccc
Q 006854 138 GTAAIPAHT 146 (628)
Q Consensus 138 G~~~i~l~~ 146 (628)
|.+.+++-+
T Consensus 315 g~~~~~lFd 323 (940)
T 2wxf_A 315 AWANLMLFD 323 (940)
T ss_dssp EEEEEESBC
T ss_pred EEEeeeEEC
Confidence 888888754
No 72
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=46.58 E-value=79 Score=37.81 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=42.6
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeEeeEEEEEecC----CCceEEEEEEEcCCC-----CCeeeEEEecccc
Q 006854 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVF-----GAQIIGTAAIPAH 145 (628)
Q Consensus 80 ~dpyv~v~l--~~~~---~~kT~v~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~d~~-----~~~~iG~~~i~l~ 145 (628)
.+.||++.+ ++.. ..+|+.+ ...+|.|||..+|++.- ..+.|.|+||+.... ....||.+.++|-
T Consensus 375 ~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 375 DKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp CCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred ceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 567888876 3311 1233333 35678899998887543 267899999986543 1357999999885
Q ss_pred cc
Q 006854 146 TI 147 (628)
Q Consensus 146 ~l 147 (628)
+.
T Consensus 454 d~ 455 (1091)
T 3hhm_A 454 DY 455 (1091)
T ss_dssp CT
T ss_pred cc
Confidence 43
No 73
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=37.66 E-value=1.1e+02 Score=30.17 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=56.6
Q ss_pred CCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhcccccc
Q 006854 284 DLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTI 363 (628)
Q Consensus 284 ~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~ 363 (628)
..++.+.+.+..++|++|.+++ -..-+... -+++..+.+...|+.+.+... . ++
T Consensus 50 gvrfy~~f~~h~~~Ggkv~~Il-GgstsQrl-----------TSKQavEElL~cGvev~IiNr--k---Ri--------- 103 (358)
T 2c1l_A 50 GVRFYETFTEHINQGGRVIAIL-GGSTSQRL-----------SSRQVVEELLNRGVEVHIINR--K---RI--------- 103 (358)
T ss_dssp TTTTHHHHHHHHHTTCEEEEEE-ECCSSSCC-----------BBHHHHHHHHHTTCEEEEEEC--S---SC---------
T ss_pred ceeecHHHHHHHhcCCcEEEEE-cccccccc-----------cHHHHHHHHHhcCCceEEeee--e---ee---------
Confidence 3789999999999999999997 33322221 167888889999999885321 1 11
Q ss_pred ccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (628)
Q Consensus 364 ~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~ 396 (628)
-|.|+..--.. +.-..+||+-|++-.
T Consensus 104 --~HaK~Yg~~~n-----~g~~LIV~SgNfT~p 129 (358)
T 2c1l_A 104 --LHAKLYGTSNN-----LGESLVVSSGNFTGP 129 (358)
T ss_dssp --BCCEEEEEEET-----TEEEEEEESCCBSTT
T ss_pred --cchhhhcccCC-----CceEEEEecCCcccc
Confidence 29999988554 223677888888873
No 74
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=34.66 E-value=1.1e+02 Score=36.08 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=41.5
Q ss_pred CCcEEEEEE--CCeee--eeeccccCCCCCeEeeEEEEEecC----CCceEEEEEEEcCCC-----------------CC
Q 006854 80 SDPYVTVVV--PQATV--ARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVF-----------------GA 134 (628)
Q Consensus 80 ~dpyv~v~l--~~~~~--~kT~v~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~d~~-----------------~~ 134 (628)
.+-||++.+ +.... .+|+.+.-+.+|.|||.++|++.- ..+.|.|+||+.... ..
T Consensus 238 ~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (961)
T 1e7u_A 238 LTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGAKPALSGKTSAEMPSPESKGKA 317 (961)
T ss_dssp EEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEEEC--------------------
T ss_pred ceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEecccCccccccccccccccccccc
Confidence 567887764 44222 245444457789999998887443 266789999974211 13
Q ss_pred eeeEEEeccccc
Q 006854 135 QIIGTAAIPAHT 146 (628)
Q Consensus 135 ~~iG~~~i~l~~ 146 (628)
..+|.+.++|-+
T Consensus 318 ~~lg~~n~~lfd 329 (961)
T 1e7u_A 318 QLLYYVNLLLID 329 (961)
T ss_dssp CEEEEEEEESBC
T ss_pred eeEEEEeeeeec
Confidence 467777777644
No 75
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=28.79 E-value=1.3e+02 Score=26.77 Aligned_cols=77 Identities=13% Similarity=0.077 Sum_probs=45.2
Q ss_pred CCCCceecCCCCccCCcchHHHHHHHHHhc--cceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHH-hhcCCEE
Q 006854 225 GILPEIPLDGGKLYKPGTCWEDICHAISEA--HHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYK-SEEGVRV 301 (628)
Q Consensus 225 g~~~~~~l~~g~~y~~~~~f~~l~~aI~~A--k~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~a-A~rGV~V 301 (628)
|+-....+..+++|..+.++.++.-|...+ .+.|. ..|.+...+++...... |......+.+.++.. .+.||++
T Consensus 11 ~~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~-~VFf~~DGV~~a~~~q~--p~~~~~~l~~~~~~La~~~gv~l 87 (140)
T 2d1p_A 11 GSMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELS-SVFFYREGVYNANQLTS--PASDEFDLVRAWQQLNAQHGVAL 87 (140)
T ss_dssp CCCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEE-EEEECGGGGGGGBTTCC--CCTTSCCHHHHHHHHHHHHCCEE
T ss_pred CceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccC-EEEEechHHHHHhcCCC--CccccCChHHHHHHHHHHcCCEE
Confidence 444555566677787777777766665544 34441 44555666665543322 222125678888887 5779985
Q ss_pred EEE
Q 006854 302 LLL 304 (628)
Q Consensus 302 rIL 304 (628)
++=
T Consensus 88 ~vC 90 (140)
T 2d1p_A 88 NIC 90 (140)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 76
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=28.27 E-value=69 Score=27.40 Aligned_cols=44 Identities=18% Similarity=0.418 Sum_probs=32.8
Q ss_pred CcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhhccCCceEE
Q 006854 285 LTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCV 342 (628)
Q Consensus 285 ~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 342 (628)
.-+.+.+.+|.+|||+|.+. |++...-. .++..+.++..|+.+.
T Consensus 90 ewikdfieeakergvevfvv-ynnkdddr-------------rkeaqqefrsdgvdvr 133 (162)
T 2l82_A 90 EWIKDFIEEAKERGVEVFVV-YNNKDDDR-------------RKEAQQEFRSDGVDVR 133 (162)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-EECSCHHH-------------HHHHHHHHCCSSCEEE
T ss_pred HHHHHHHHHHHhcCcEEEEE-ecCCCchh-------------HHHHHHHhhhcCceee
Confidence 45788888899999999999 67653211 2456677889999987
No 77
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=25.24 E-value=44 Score=40.00 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=25.5
Q ss_pred eeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEc
Q 006854 95 RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDD 129 (628)
Q Consensus 95 kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~ 129 (628)
.|+.+..+.+|.|||.++|++.-. .+.|.|+||+.
T Consensus 391 ~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~ 429 (1092)
T 2y3a_A 391 VSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAV 429 (1092)
T ss_dssp BCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred ecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence 454444477899999988875442 56789999875
No 78
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=23.04 E-value=1.5e+02 Score=24.43 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=36.4
Q ss_pred cCCcchHHHHHHHHHhc---cc-eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEE
Q 006854 238 YKPGTCWEDICHAISEA---HH-LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (628)
Q Consensus 238 y~~~~~f~~l~~aI~~A---k~-sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILv 305 (628)
|..+.++.++.-+...+ .+ .|. -|.+.+.+++...+..+ .. ...+.+.|+...+.||+|++-.
T Consensus 13 ~~~~~~~~al~~a~~~~~~~g~~~v~--vff~~dgV~~~~~~~~~--~~-~~~~~~~l~~l~~~gv~v~~C~ 79 (117)
T 1jx7_A 13 YGSESLFNSLRLAIALREQESNLDLR--LFLMSDAVTAGLRGQKP--GE-GYNIQQMLEILTAQNVPVKLCK 79 (117)
T ss_dssp TTCSHHHHHHHHHHHHHHHCTTCEEE--EEECGGGGGGGBSCCCC--SS-SCCHHHHHHHHHHTTCCEEEEH
T ss_pred CCcHHHHHHHHHHHHHHhcCCCccEE--EEEEchHHHHHhcCCCC--Cc-CCCHHHHHHHHHHCCCEEEEeH
Confidence 44345555555444433 33 443 34446777666543321 21 2578899999889999777764
No 79
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=22.82 E-value=1e+02 Score=26.80 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=37.2
Q ss_pred cCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCC--CCCCCCCcHHHHHHHHhhcCCEEEEE
Q 006854 238 YKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRP--LPRGGDLTLGELLKYKSEEGVRVLLL 304 (628)
Q Consensus 238 y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~--~~~g~~~~l~~~L~~aA~rGV~VrIL 304 (628)
|..+.++.++.-|...|..-..+.-|.....+.+.+.+... .|.+ ...+.+++..+.+.||+|++=
T Consensus 27 ~~~~~~~~al~lA~~A~a~g~eV~vFf~~dGV~~l~k~~~~~i~~~~-~~~~~~ll~~~~~~Gv~v~vC 94 (134)
T 3mc3_A 27 EDLDRTYAPLFMASISASMEYETSVFFMIXGPXLLDXXWQEEERXXG-GNPFIHFFDMAXENGVXMYVC 94 (134)
T ss_dssp GGTHHHHHHHHHHHHHHHTTCEEEEEECTTGGGGGBHHHHHHHHHHC-CCHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEeCcHHHHhhcchhhcccCC-CCCHHHHHHHHHHcCCcEEEc
Confidence 44467888888777665422223334445555554332100 0011 256888999999999866554
Done!