BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006855
(628 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93YW0|EXEC1_ARATH Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1
PE=1 SV=1
Length = 684
Score = 356 bits (914), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 221/554 (39%), Positives = 320/554 (57%), Gaps = 35/554 (6%)
Query: 98 RWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKN 157
RW +HF +++ + S+LK QL AI+RED+E+AA LK AIA A+ D V ++M+
Sbjct: 115 RWKKHFDQVDDQDRLLSVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVMSTFYR 174
Query: 158 AIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLV 217
A+ EERY DA L G+GLVGWW G S+D DPFG ++QI GR+VAR+Y+PRQL
Sbjct: 175 ALLEERYKDAVYLRDKAGAGLVGWWSGISEDVKDPFGLIVQITAEHGRYVARSYNPRQLS 234
Query: 218 TASPGTPLFEIFVVKDNEESYVMQVVHLKQAK-----GTSTNSTSSPSKSTKSPSTSEVE 272
T++ G PLFEIF+ D + +Y Q V+LK + T + T +P + SP E
Sbjct: 235 TSAAGAPLFEIFLTLDGKGNYKKQAVYLKWKEIFPDVPTMPSRTLTPGRFLTSPGRKEDT 294
Query: 273 NASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVT 332
V+ + + D+ + E G +S FL++ IPG+KVKVM + V
Sbjct: 295 GNLAVESSEDEESDNSDDDSDLLEE---SSGFQS---FLRDMIPGVKVKVMKVTAPGRV- 347
Query: 333 DDADSLKQLIQD----------GEEAESSDSEGEADDIEEIQPDEVALEGANEASEDE-- 380
D D + ++I+ + + + +I+E D + LE + D
Sbjct: 348 -DKDFISKVIEQIADEEDEENDLDIEDIDVEDDTKAEIDEKNAD-IELESVTDEIIDNNG 405
Query: 381 -KELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKM 439
+E+ K IG +V E +R PA+++ +E SF L + K L+ + +
Sbjct: 406 GREIAVKFVIGDIVDRLSGNQPLKESLRSPANLESVENSSFYLRL-EKDLNVKESKGVEG 464
Query: 440 SKL---KVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSRLS 496
+ L K + + + + +M D+AK+ K S K+ +DV E+L L +SQAQ + +LS
Sbjct: 465 TTLVDGKGSRQSRRRIENIMG-DLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQLS 523
Query: 497 EYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSG--EGEKSSDMEFFEY 554
T F RI+ + LDP DGLY+GA G Y +EV+ L+RK+GQW G E +K +D+EF+EY
Sbjct: 524 GLTKFRRIDVTPS-LDPLDGLYIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEFYEY 582
Query: 555 VEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPK 614
VEAVKLTGD VPAG+V FRAKIG+ LP++G P+E GV+A Y GQGR+AD GFRNP+
Sbjct: 583 VEAVKLTGDPYVPAGKVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRNPR 642
Query: 615 WVDGELLQLNGKVV 628
WVDGEL+ L+GK V
Sbjct: 643 WVDGELVILDGKYV 656
>sp|B2RYN2|FBX31_RAT F-box only protein 31 OS=Rattus norvegicus GN=Fbxo31 PE=2 SV=1
Length = 507
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 516 GLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRA 575
GL+ G +G +G E+V L S G ++ K+TGD N+PAG+ T
Sbjct: 289 GLFKGTYGSHGLEIVML-------SFHGSRA---------RGTKITGDPNIPAGQQTVEI 332
Query: 576 KIGKGSRLPN 585
+ + +LP+
Sbjct: 333 DLQRRIQLPD 342
>sp|Q3TQF0|FBX31_MOUSE F-box only protein 31 OS=Mus musculus GN=Fbxo31 PE=1 SV=1
Length = 507
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 516 GLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRA 575
GL+ G +G +G E+V L S G ++ K+TGD N+PAG+ T
Sbjct: 289 GLFKGTYGSHGLEIVML-------SFHGSRA---------RGTKITGDPNIPAGQQTVEI 332
Query: 576 KIGKGSRLPN 585
+ + +LP+
Sbjct: 333 DLQRRIQLPD 342
>sp|Q5UQW6|YR387_MIMIV Uncharacterized protein R387 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R387 PE=1 SV=1
Length = 265
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 285 KEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQD 344
+ SD+KG+N+ T ++ I+ L ++I LK ++ N+ + A T +SL+Q + D
Sbjct: 24 RNHMSDQKGVNVNNQTYNMLQQQISSLNQQILFLKQQISNLHVPAP-TSTVNSLRQTVSD 82
Query: 345 GEEAESS 351
+ S+
Sbjct: 83 INQQVST 89
>sp|Q65ZT8|UVRB_BORGA UvrABC system protein B OS=Borrelia garinii (strain PBi) GN=uvrB
PE=3 SV=1
Length = 664
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 116 LKFQLEDAIEREDFEEAANLKNAIAEAASKDTVA 149
LKF+LE+A+ E FE+A L++ I E +SK +VA
Sbjct: 628 LKFELEEAVNDERFEDAIVLRDKIKELSSKISVA 661
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,293,921
Number of Sequences: 539616
Number of extensions: 10529298
Number of successful extensions: 38400
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 321
Number of HSP's that attempted gapping in prelim test: 37400
Number of HSP's gapped (non-prelim): 1136
length of query: 628
length of database: 191,569,459
effective HSP length: 124
effective length of query: 504
effective length of database: 124,657,075
effective search space: 62827165800
effective search space used: 62827165800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)