Query 006855
Match_columns 628
No_of_seqs 124 out of 139
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 10:44:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e52_A Excinuclease ABC subuni 96.7 0.0013 4.6E-08 53.8 4.2 38 108-145 21-58 (63)
2 2d7d_A Uvrabc system protein B 92.2 0.091 3.1E-06 58.0 4.3 38 107-144 622-659 (661)
3 1c4o_A DNA nucleotide excision 86.5 0.13 4.5E-06 56.7 0.0 39 107-145 607-645 (664)
4 1e52_A Excinuclease ABC subuni 86.4 0.34 1.2E-05 39.7 2.3 26 148-173 26-51 (63)
5 2ca6_A RAN GTPase-activating p 67.6 3 0.0001 41.2 3.1 23 302-326 289-311 (386)
6 3pxg_A Negative regulator of g 57.0 8.5 0.00029 40.4 4.4 41 104-144 394-434 (468)
7 2d7d_A Uvrabc system protein B 45.4 9.5 0.00033 42.1 2.6 29 146-174 626-654 (661)
8 2ca6_A RAN GTPase-activating p 41.7 5.9 0.0002 39.1 0.2 7 27-33 34-40 (386)
9 1gp8_A Protein (scaffolding pr 40.6 18 0.00061 27.5 2.6 29 113-141 10-38 (40)
10 3kf9_B MLCK2, myosin light cha 37.7 19 0.00066 24.3 2.1 15 98-112 3-17 (22)
11 1loi_A Cyclic 3',5'-AMP specif 33.1 7.6 0.00026 26.7 -0.4 8 177-184 15-22 (26)
12 1c4o_A DNA nucleotide excision 32.0 9.7 0.00033 42.1 0.0 29 145-173 610-638 (664)
13 1xl3_C Protein type A, secreti 29.1 28 0.00096 30.6 2.4 29 101-129 58-86 (92)
14 3hho_A CO-chaperone protein HS 29.0 1E+02 0.0035 28.7 6.4 21 150-170 131-151 (174)
15 1sr2_A Putative sensor-like hi 26.9 1.2E+02 0.0041 26.5 6.1 51 118-169 49-103 (116)
16 3g4p_A Beta-lactamase OXA-24; 26.2 15 0.00052 36.0 0.3 42 150-192 165-211 (244)
17 3isg_A Penicillinase, beta-lac 25.3 28 0.00096 34.3 1.9 57 150-206 167-232 (251)
18 1j0g_A Hypothetical protein 18 25.0 23 0.00078 30.9 1.1 13 2-14 56-68 (92)
19 3uo3_A J-type CO-chaperone JAC 23.0 1.3E+02 0.0043 28.5 5.9 24 148-171 134-157 (181)
20 1fpo_A HSC20, chaperone protei 22.2 2E+02 0.0068 26.7 7.0 47 119-170 101-147 (171)
21 3pxi_A Negative regulator of g 21.5 55 0.0019 36.2 3.6 39 105-143 395-433 (758)
22 2fbn_A 70 kDa peptidylprolyl i 20.8 3.7E+02 0.013 23.1 8.0 69 106-174 31-114 (198)
No 1
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=96.69 E-value=0.0013 Score=53.81 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=34.9
Q ss_pred HHhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcC
Q 006855 108 QAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASK 145 (628)
Q Consensus 108 ~~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~~ 145 (628)
+...++..|+.+|..|++.++|+.||+||+.|.+++..
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999998753
No 2
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.21 E-value=0.091 Score=58.02 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=26.1
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855 107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS 144 (628)
Q Consensus 107 e~~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~ 144 (628)
++...++..|+.+|..|++.+|||.||+||+.|.+++.
T Consensus 622 ~~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~ 659 (661)
T 2d7d_A 622 KERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence 35666777888888888888888888888888877754
No 3
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=86.49 E-value=0.13 Score=56.74 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcC
Q 006855 107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASK 145 (628)
Q Consensus 107 e~~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~~ 145 (628)
++.+..+..|+.+|.+|++.++|+.||+||+.|.+++..
T Consensus 607 ~~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~ 645 (664)
T 1c4o_A 607 EDLRERIAELELAMWQAAEALDFERAARLRDEIRALEAR 645 (664)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 466777888899999999999999999999998887753
No 4
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=86.37 E-value=0.34 Score=39.66 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhc
Q 006855 148 VAEIMAQLKNAIDEERYHDASRLCRY 173 (628)
Q Consensus 148 V~~v~~~Lk~AI~EERY~DAA~LRD~ 173 (628)
+..+..+|+.|.++++|+.||+|||.
T Consensus 26 i~~Le~~M~~AA~~leFE~AA~lRD~ 51 (63)
T 1e52_A 26 IHELEGLMMQHAQNLEFEEAAQIRDQ 51 (63)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45678899999999999999999996
No 5
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=67.56 E-value=3 Score=41.20 Aligned_cols=23 Identities=17% Similarity=0.606 Sum_probs=13.8
Q ss_pred hhhhHHHhhhhccCCCceeEEEEec
Q 006855 302 EGIKSVINFLKEKIPGLKVKVMNID 326 (628)
Q Consensus 302 EGi~~v~nflkd~iP~~KvKVlkV~ 326 (628)
+|+..+...++...|.+ +.|.+.
T Consensus 289 ~g~~~l~~~l~~~l~~L--~~L~l~ 311 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDL--LFLELN 311 (386)
T ss_dssp HHHHHHHHHHHHHCTTC--CEEECT
T ss_pred HHHHHHHHHHHhcCCCc--eEEEcc
Confidence 46666666666666644 456654
No 6
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=56.96 E-value=8.5 Score=40.44 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=36.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855 104 SEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS 144 (628)
Q Consensus 104 ~~ve~~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~ 144 (628)
.+|++.++.+..|+.+++.|+..+||+.|+.|+..+.+++.
T Consensus 394 ~~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~ 434 (468)
T 3pxg_A 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLRE 434 (468)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 35788889999999999999999999999999998887543
No 7
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=45.44 E-value=9.5 Score=42.13 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 006855 146 DTVAEIMAQLKNAIDEERYHDASRLCRYT 174 (628)
Q Consensus 146 D~V~~v~~~Lk~AI~EERY~DAA~LRD~a 174 (628)
..+.++..+|+.|.+++.|+.||+|||+-
T Consensus 626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i 654 (661)
T 2d7d_A 626 KVVEQMEHEMKEAAKALDFERAAELRDLL 654 (661)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34667888999999999999999999973
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=41.72 E-value=5.9 Score=39.09 Aligned_cols=7 Identities=29% Similarity=0.225 Sum_probs=3.6
Q ss_pred ceecccc
Q 006855 27 FQCLDLS 33 (628)
Q Consensus 27 ~~~~~~~ 33 (628)
.+.|+|+
T Consensus 34 L~~L~L~ 40 (386)
T 2ca6_A 34 VKEIVLS 40 (386)
T ss_dssp CCEEECT
T ss_pred ccEEECC
Confidence 4455554
No 9
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=40.56 E-value=18 Score=27.53 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 006855 113 ASLLKFQLEDAIEREDFEEAANLKNAIAE 141 (628)
Q Consensus 113 ~~~Lk~QLe~AV~~EDy~eAArLK~ai~~ 141 (628)
.+.|+.||..|....||+.+-.|+..|+.
T Consensus 10 I~aiEQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 10 KDAIRKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 46789999999999999999999987753
No 10
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=37.70 E-value=19 Score=24.31 Aligned_cols=15 Identities=27% Similarity=0.875 Sum_probs=12.2
Q ss_pred HHHhhhhHHHHHhHH
Q 006855 98 RWTRHFSEIEQAESY 112 (628)
Q Consensus 98 rW~rhF~~ve~~e~~ 112 (628)
+|++||+.|-.+-+|
T Consensus 3 ~WkK~f~av~Aanrl 17 (22)
T 3kf9_B 3 RWKKNFIAVSAANRF 17 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 899999998766554
No 11
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=33.08 E-value=7.6 Score=26.69 Aligned_cols=8 Identities=63% Similarity=1.435 Sum_probs=6.1
Q ss_pred cceeeeee
Q 006855 177 GLVGWWVG 184 (628)
Q Consensus 177 GLvGWW~G 184 (628)
=|||||--
T Consensus 15 wlvgwwdq 22 (26)
T 1loi_A 15 WLVGWWDQ 22 (26)
T ss_dssp TGGGGHHH
T ss_pred hhhhhHHH
Confidence 48999954
No 12
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=32.01 E-value=9.7 Score=42.10 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 006855 145 KDTVAEIMAQLKNAIDEERYHDASRLCRY 173 (628)
Q Consensus 145 ~D~V~~v~~~Lk~AI~EERY~DAA~LRD~ 173 (628)
...+.++..+|++|.+++.|+.||+|||+
T Consensus 610 ~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~ 638 (664)
T 1c4o_A 610 RERIAELELAMWQAAEALDFERAARLRDE 638 (664)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 34466788899999999999999999997
No 13
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=29.05 E-value=28 Score=30.59 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=26.3
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHhhhcH
Q 006855 101 RHFSEIEQAESYASLLKFQLEDAIEREDF 129 (628)
Q Consensus 101 rhF~~ve~~e~~~~~Lk~QLe~AV~~EDy 129 (628)
.-|+..|+..+++...|.-|..||++||=
T Consensus 58 ~vf~d~e~R~~lL~a~Q~AlD~aI~~Ede 86 (92)
T 1xl3_C 58 GVFSDEEQRQNLLQMCQNAIDMAIESEEE 86 (92)
T ss_dssp GGSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999973
No 14
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=28.98 E-value=1e+02 Score=28.73 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhh
Q 006855 150 EIMAQLKNAIDEERYHDASRL 170 (628)
Q Consensus 150 ~v~~~Lk~AI~EERY~DAA~L 170 (628)
.+...|..|++.+.|..|+.+
T Consensus 131 ~~~~~l~~~~~~~d~~~A~~~ 151 (174)
T 3hho_A 131 HYLAQLQGQLAQSEWLAAADQ 151 (174)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHH
Confidence 566667777777777777643
No 15
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=26.85 E-value=1.2e+02 Score=26.53 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=38.9
Q ss_pred HHHHHHHhhhcHHH----HHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhhhhhhh
Q 006855 118 FQLEDAIEREDFEE----AANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASR 169 (628)
Q Consensus 118 ~QLe~AV~~EDy~e----AArLK~ai~~~~~~D~V~~v~~~Lk~AI~EERY~DAA~ 169 (628)
.+|+.|+...|++. |+|||=+..-+ +-..+..++.+|++++....+.....
T Consensus 49 ~~L~~A~~~~D~~~l~~~aHrLKGaa~~l-G~~~L~~lc~~LE~~~~~~~~~~l~~ 103 (116)
T 1sr2_A 49 KRLYTEAATSDFAALAQTAHRLKGVFAML-NLVPGKQLCETLEHLIREKDVPGIEK 103 (116)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 57888999999876 67777765544 56778899999999988877655543
No 16
>3g4p_A Beta-lactamase OXA-24; B-lactamases, enzyme mechanism, carbapenem, resistance, HYDR; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* 3mbz_A* 3pae_A* 3pag_A*
Probab=26.16 E-value=15 Score=36.01 Aligned_cols=42 Identities=21% Similarity=0.509 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccCCcc-----eeeeeeccCCCCCC
Q 006855 150 EIMAQLKNAIDEERYHDASRLCRYTGSGL-----VGWWVGYSKDSDDP 192 (628)
Q Consensus 150 ~v~~~Lk~AI~EERY~DAA~LRD~ag~GL-----vGWW~G~s~~~~dp 192 (628)
+.+..+++++..|+ .+-..|+=++|+|- .|||+|+.+..++|
T Consensus 165 ~~~~~v~~~m~~~~-~~g~~~~GKTGta~~~~~~~gwfvG~~~~~~~~ 211 (244)
T 3g4p_A 165 ETQEEVKKMLLIKE-VNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGK 211 (244)
T ss_dssp HHHHHHHHTTEEEE-ETTEEEEEEEEEECSSSSEEEEEEEEEECTTSC
T ss_pred HHHHHHHHHHhhhc-cCCeeEEeEEeccccCCCCcEEEEEEEEcCCCC
Confidence 34555566555444 45567888899984 79999998876666
No 17
>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine carboxylation, antibiotic resistance; HET: KCX DRW; 1.40A {Escherichia coli} SCOP: e.3.1.1 PDB: 1m6k_A*
Probab=25.27 E-value=28 Score=34.34 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccCCcc-------eeeeeec-cCCCCCCcceeEEee-cCCcee
Q 006855 150 EIMAQLKNAIDEERYHDASRLCRYTGSGL-------VGWWVGY-SKDSDDPFGRLIQIK-PGVGRF 206 (628)
Q Consensus 150 ~v~~~Lk~AI~EERY~DAA~LRD~ag~GL-------vGWW~G~-s~~~~dp~G~Iiris-~~~GR~ 206 (628)
+.+..+++.+..+.-.+--+++=++|+|- .|||+|+ ..-.+..+=..+.|. |..|.|
T Consensus 167 ~~~~~v~~~m~~~~~~~g~~v~GKTGTa~~~~~~~~~gWFvG~vap~~~p~~~~av~ie~~~~~~~ 232 (251)
T 3isg_A 167 SAIENTIENMYLQDLDNSTKLYGKTGAGFTANRTLQNGWFEGFIISKSGHKYVFVSALTGNLGSNL 232 (251)
T ss_dssp HHHHHHHHHTEEEECTTSCEEEEEEEEEECTTSSCEEEEEEEEEECTTCCEEEEEEEEEECCTTSC
T ss_pred HHHHHHHHhheeeecCCCeEEEEEecCcccCCCCCceEEEEEEEEEcCCCeEEEEEEEEcCCCCcc
Confidence 33445555554332224456888888764 7999999 666555544444443 234444
No 18
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=24.96 E-value=23 Score=30.87 Aligned_cols=13 Identities=69% Similarity=1.086 Sum_probs=11.7
Q ss_pred eeecCCccccccc
Q 006855 2 IITNNGWGITPAT 14 (628)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (628)
||||.|.||.|+.
T Consensus 56 iiT~dGiGInP~Q 68 (92)
T 1j0g_A 56 IITNDGIGINPAQ 68 (92)
T ss_dssp EECTTSCCCCCSS
T ss_pred EEecCCcccChhh
Confidence 8999999999963
No 19
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=22.96 E-value=1.3e+02 Score=28.47 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh
Q 006855 148 VAEIMAQLKNAIDEERYHDASRLC 171 (628)
Q Consensus 148 V~~v~~~Lk~AI~EERY~DAA~LR 171 (628)
+..+...|.+|++.+.|+.|+.+-
T Consensus 134 ~~~~~~~l~~~~~~~d~~~A~~~~ 157 (181)
T 3uo3_A 134 IQDIEAQLGQCYNDKDYAAAVKLT 157 (181)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHH
Confidence 347778899999999999998653
No 20
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=22.22 E-value=2e+02 Score=26.71 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=24.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhhhhhhhh
Q 006855 119 QLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRL 170 (628)
Q Consensus 119 QLe~AV~~EDy~eAArLK~ai~~~~~~D~V~~v~~~Lk~AI~EERY~DAA~L 170 (628)
+|++|-..+|-..-.+|+..+.+... .+...|..|++.+.|..|+.+
T Consensus 101 ~lee~~~~~d~~~l~~l~~~~~~~~~-----~~~~~l~~~~~~~~~~~A~~~ 147 (171)
T 1fpo_A 101 ELDEIEQAKDEARLESFIKRVKKMFD-----TRHQLMVEQLDNETWDAAADT 147 (171)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhCcHHHHHHH
Confidence 34444333443333444444444332 456666667767777666654
No 21
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.55 E-value=55 Score=36.19 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=32.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006855 105 EIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA 143 (628)
Q Consensus 105 ~ve~~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~ 143 (628)
++++.++-+..|+.+.+.++..+||+.|+.|+..+..+.
T Consensus 395 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 433 (758)
T 3pxi_A 395 NLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLR 433 (758)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 356667777888899999999999999999998877654
No 22
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=20.75 E-value=3.7e+02 Score=23.06 Aligned_cols=69 Identities=12% Similarity=-0.021 Sum_probs=42.4
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcCCh--------------HHHHHHHHH-HHhhhhhhhhhhhh
Q 006855 106 IEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDT--------------VAEIMAQLK-NAIDEERYHDASRL 170 (628)
Q Consensus 106 ve~~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~~D~--------------V~~v~~~Lk-~AI~EERY~DAA~L 170 (628)
.++....+..+...=.......+|++|.++=.....+...++ ...+...|- ..+...+|.+|..+
T Consensus 31 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344555556666666667889999999987766666555555 012222222 23456788888777
Q ss_pred hhcc
Q 006855 171 CRYT 174 (628)
Q Consensus 171 RD~a 174 (628)
.+.+
T Consensus 111 ~~~a 114 (198)
T 2fbn_A 111 ASKV 114 (198)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
Done!