Query 006856
Match_columns 628
No_of_seqs 435 out of 2127
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 10:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmu_A Homeobox protein goosec 99.7 1.5E-18 5.2E-23 143.0 6.6 65 491-555 3-67 (70)
2 2dmq_A LIM/homeobox protein LH 99.7 3.1E-18 1E-22 144.5 7.9 66 491-556 3-68 (80)
3 2dms_A Homeobox protein OTX2; 99.7 3.1E-18 1.1E-22 144.8 7.7 65 491-555 3-67 (80)
4 2cra_A Homeobox protein HOX-B1 99.7 1.2E-18 4.1E-23 143.8 4.9 64 491-554 3-66 (70)
5 2cue_A Paired box protein PAX6 99.7 3.6E-18 1.2E-22 144.5 7.5 68 491-558 3-70 (80)
6 2da2_A Alpha-fetoprotein enhan 99.7 1.5E-18 5E-23 143.0 5.0 65 490-554 2-66 (70)
7 2e1o_A Homeobox protein PRH; D 99.7 2.9E-18 1E-22 141.5 6.6 65 491-555 3-67 (70)
8 2da1_A Alpha-fetoprotein enhan 99.7 2E-18 6.9E-23 142.2 4.9 64 491-554 3-66 (70)
9 1nk2_P Homeobox protein VND; h 99.7 6.4E-18 2.2E-22 142.0 7.6 66 491-556 5-70 (77)
10 2djn_A Homeobox protein DLX-5; 99.7 1.7E-18 5.9E-23 142.8 3.9 64 491-554 3-66 (70)
11 2dmt_A Homeobox protein BARH-l 99.7 3E-18 1E-22 145.0 5.3 63 492-554 14-76 (80)
12 1wh5_A ZF-HD homeobox family p 99.7 4.9E-18 1.7E-22 144.4 4.9 60 492-551 14-77 (80)
13 2da3_A Alpha-fetoprotein enhan 99.7 4.4E-18 1.5E-22 143.2 4.5 63 492-554 14-76 (80)
14 2h1k_A IPF-1, pancreatic and d 99.7 8.9E-18 3.1E-22 135.8 6.0 59 495-553 3-61 (63)
15 1ig7_A Homeotic protein MSX-1; 99.7 1.1E-17 3.6E-22 132.9 6.1 57 496-552 1-57 (58)
16 2hdd_A Protein (engrailed home 99.7 7.1E-18 2.4E-22 135.5 5.1 58 495-552 3-60 (61)
17 2kt0_A Nanog, homeobox protein 99.7 7.2E-18 2.5E-22 143.5 5.4 64 491-554 18-81 (84)
18 1jgg_A Segmentation protein EV 99.7 1.1E-17 3.6E-22 134.0 5.7 58 496-553 2-59 (60)
19 1ahd_P Antennapedia protein mu 99.7 1.1E-17 3.7E-22 137.6 5.2 61 495-555 2-62 (68)
20 3a01_A Homeodomain-containing 99.7 1.7E-17 5.9E-22 144.5 6.6 68 491-558 13-80 (93)
21 2vi6_A Homeobox protein nanog; 99.7 8.6E-18 2.9E-22 135.4 4.3 59 494-552 2-60 (62)
22 1zq3_P PRD-4, homeotic bicoid 99.7 1.9E-17 6.6E-22 135.9 6.3 62 495-556 2-63 (68)
23 1ftt_A TTF-1 HD, thyroid trans 99.7 1.9E-17 6.6E-22 136.0 6.2 61 495-555 2-62 (68)
24 1puf_A HOX-1.7, homeobox prote 99.7 2.8E-17 9.6E-22 138.1 7.2 63 493-555 11-73 (77)
25 1fjl_A Paired protein; DNA-bin 99.7 2.2E-17 7.4E-22 139.9 6.5 64 492-555 15-78 (81)
26 1yz8_P Pituitary homeobox 2; D 99.7 9.1E-18 3.1E-22 137.7 4.0 62 494-555 2-63 (68)
27 1bw5_A ISL-1HD, insulin gene e 99.7 1.1E-17 3.6E-22 136.5 4.3 59 494-552 2-60 (66)
28 1x2n_A Homeobox protein pknox1 99.7 3.1E-17 1.1E-21 136.2 6.9 63 492-554 4-69 (73)
29 1akh_A Protein (mating-type pr 99.7 1.3E-17 4.3E-22 133.7 4.4 57 493-549 3-59 (61)
30 2dmn_A Homeobox protein TGIF2L 99.7 3.9E-17 1.3E-21 139.5 7.7 64 491-554 3-69 (83)
31 1wh7_A ZF-HD homeobox family p 99.7 1.1E-17 3.8E-22 142.4 4.3 59 492-551 14-77 (80)
32 2l7z_A Homeobox protein HOX-A1 99.7 2E-17 7E-22 137.7 5.7 62 493-554 5-66 (73)
33 1b8i_A Ultrabithorax, protein 99.7 2.1E-17 7.2E-22 140.3 5.0 62 493-554 18-79 (81)
34 2da5_A Zinc fingers and homeob 99.7 4.3E-17 1.5E-21 136.5 6.7 58 497-554 9-66 (75)
35 2da4_A Hypothetical protein DK 99.7 2.2E-17 7.5E-22 139.6 4.5 62 492-553 5-70 (80)
36 2cuf_A FLJ21616 protein; homeo 99.7 5.6E-17 1.9E-21 141.5 7.2 66 490-555 2-82 (95)
37 3rkq_A Homeobox protein NKX-2. 99.7 4.1E-17 1.4E-21 128.9 5.1 56 495-550 2-57 (58)
38 3a02_A Homeobox protein arista 99.7 3.4E-17 1.2E-21 131.1 4.7 57 498-554 2-58 (60)
39 2m0c_A Homeobox protein arista 99.7 7.5E-17 2.6E-21 134.0 6.7 62 492-553 6-67 (75)
40 2ecc_A Homeobox and leucine zi 99.7 5.9E-17 2E-21 136.9 5.9 55 499-553 7-61 (76)
41 2r5y_A Homeotic protein sex co 99.7 4.2E-17 1.4E-21 140.3 4.6 61 493-553 26-86 (88)
42 2k40_A Homeobox expressed in E 99.7 5.1E-17 1.7E-21 132.8 4.9 58 496-553 2-59 (67)
43 2ecb_A Zinc fingers and homeob 99.7 7.6E-17 2.6E-21 140.1 6.2 55 500-554 16-70 (89)
44 2hi3_A Homeodomain-only protei 99.7 8.9E-17 3E-21 133.7 6.4 59 496-554 3-62 (73)
45 3a03_A T-cell leukemia homeobo 99.7 6.9E-17 2.3E-21 127.9 5.4 54 500-553 2-55 (56)
46 1puf_B PRE-B-cell leukemia tra 99.6 8.2E-17 2.8E-21 133.7 5.6 61 496-556 2-65 (73)
47 1uhs_A HOP, homeodomain only p 99.6 9.7E-17 3.3E-21 133.0 5.9 58 497-554 3-61 (72)
48 1b72_B Protein (PBX1); homeodo 99.6 9.3E-17 3.2E-21 137.5 5.3 61 496-556 2-65 (87)
49 1b72_A Protein (homeobox prote 99.6 1.2E-16 4.2E-21 139.8 5.6 62 493-554 32-93 (97)
50 1wi3_A DNA-binding protein SAT 99.6 1.4E-16 4.9E-21 131.5 5.5 59 491-549 3-62 (71)
51 1du6_A PBX1, homeobox protein 99.6 6.1E-17 2.1E-21 131.1 3.2 58 495-552 3-63 (64)
52 2ly9_A Zinc fingers and homeob 99.6 1.4E-16 4.9E-21 132.4 5.3 61 494-554 5-65 (74)
53 2dn0_A Zinc fingers and homeob 99.6 2.1E-16 7E-21 132.5 6.1 59 496-554 9-67 (76)
54 1le8_B Mating-type protein alp 99.6 1.6E-16 5.5E-21 135.5 5.4 58 497-554 4-64 (83)
55 1k61_A Mating-type protein alp 99.6 2.1E-16 7.1E-21 126.4 5.2 54 499-552 2-58 (60)
56 2dmp_A Zinc fingers and homeob 99.6 4.8E-16 1.6E-20 134.5 6.3 56 499-554 17-72 (89)
57 3nar_A ZHX1, zinc fingers and 99.6 3.2E-16 1.1E-20 137.0 5.1 61 493-553 23-83 (96)
58 1mnm_C Protein (MAT alpha-2 tr 99.6 7.1E-16 2.4E-20 132.4 5.7 58 493-550 25-85 (87)
59 2da6_A Hepatocyte nuclear fact 99.6 1.8E-15 6.3E-20 134.3 7.9 64 491-554 2-86 (102)
60 3nau_A Zinc fingers and homeob 99.6 1.1E-15 3.8E-20 125.7 4.8 49 503-551 12-60 (66)
61 2cqx_A LAG1 longevity assuranc 99.6 4E-16 1.4E-20 130.1 1.8 55 497-551 10-65 (72)
62 3d1n_I POU domain, class 6, tr 99.6 1.6E-15 5.4E-20 142.7 5.6 61 492-552 90-150 (151)
63 1au7_A Protein PIT-1, GHF-1; c 99.6 1.1E-15 3.9E-20 143.3 4.5 61 492-552 84-144 (146)
64 2xsd_C POU domain, class 3, tr 99.6 1.1E-15 3.8E-20 146.1 3.8 63 493-555 97-159 (164)
65 1e3o_C Octamer-binding transcr 99.5 2.1E-15 7E-20 143.4 4.6 60 493-552 99-158 (160)
66 1lfb_A Liver transcription fac 99.5 1.5E-15 5E-20 134.3 3.0 59 492-550 6-85 (99)
67 2l9r_A Homeobox protein NKX-3. 99.5 3.5E-15 1.2E-19 123.8 4.9 54 500-553 9-62 (69)
68 3k2a_A Homeobox protein MEIS2; 99.5 3E-15 1E-19 123.0 4.2 55 501-555 4-61 (67)
69 2e19_A Transcription factor 8; 99.5 3.8E-15 1.3E-19 121.6 4.6 50 500-549 8-57 (64)
70 2d5v_A Hepatocyte nuclear fact 99.5 2.7E-15 9.2E-20 142.6 3.6 62 493-554 95-156 (164)
71 1x2m_A LAG1 longevity assuranc 99.5 2.9E-15 9.9E-20 122.7 1.7 46 504-549 9-55 (64)
72 3l1p_A POU domain, class 5, tr 99.5 7.6E-15 2.6E-19 138.9 3.9 60 493-552 94-153 (155)
73 2lk2_A Homeobox protein TGIF1; 99.4 3E-13 1E-17 117.4 6.7 56 500-555 10-68 (89)
74 1fp0_A KAP-1 corepressor; PHD 99.4 2.7E-13 9.1E-18 117.5 4.7 58 229-292 16-73 (88)
75 1ic8_A Hepatocyte nuclear fact 99.4 8.9E-14 3.1E-18 136.4 1.9 60 490-549 110-190 (194)
76 1wev_A Riken cDNA 1110020M19; 99.4 1.5E-13 5.2E-18 118.9 2.6 57 236-293 14-74 (88)
77 2h8r_A Hepatocyte nuclear fact 99.3 4.6E-13 1.6E-17 133.4 4.9 61 488-548 135-216 (221)
78 1mm2_A MI2-beta; PHD, zinc fin 99.3 1.1E-12 3.8E-17 106.0 3.9 50 236-291 7-56 (61)
79 2e6r_A Jumonji/ARID domain-con 99.3 1.4E-12 4.9E-17 113.7 4.2 56 233-291 11-66 (92)
80 2l5u_A Chromodomain-helicase-D 99.3 1.7E-12 5.8E-17 105.0 4.0 51 234-290 7-57 (61)
81 1f62_A Transcription factor WS 99.3 1.4E-12 4.7E-17 101.4 2.9 48 240-290 2-49 (51)
82 2yt5_A Metal-response element- 99.3 1E-12 3.5E-17 107.2 1.9 55 236-291 4-61 (66)
83 1xwh_A Autoimmune regulator; P 99.3 1.6E-12 5.3E-17 106.7 2.9 50 236-291 6-55 (66)
84 2puy_A PHD finger protein 21A; 99.3 2E-12 6.8E-17 104.0 3.2 50 237-292 4-53 (60)
85 2da7_A Zinc finger homeobox pr 99.2 2.8E-12 9.7E-17 106.4 3.8 45 504-548 14-58 (71)
86 2lri_C Autoimmune regulator; Z 99.2 2.6E-12 9E-17 105.7 3.4 49 237-291 11-59 (66)
87 2yql_A PHD finger protein 21A; 99.2 2.4E-12 8.1E-17 102.2 3.0 48 236-289 7-54 (56)
88 2e6s_A E3 ubiquitin-protein li 99.2 4.5E-12 1.5E-16 107.3 4.9 55 231-289 20-75 (77)
89 3asl_A E3 ubiquitin-protein li 99.2 5.9E-12 2E-16 104.6 4.2 56 231-290 12-68 (70)
90 2ku3_A Bromodomain-containing 99.2 3.8E-12 1.3E-16 106.1 2.4 54 236-292 14-67 (71)
91 2l43_A N-teminal domain from h 99.2 2.9E-12 1E-16 110.9 1.6 54 236-292 23-76 (88)
92 2kwj_A Zinc finger protein DPF 99.2 9.6E-12 3.3E-16 112.1 3.5 75 214-291 29-108 (114)
93 3u5n_A E3 ubiquitin-protein li 99.1 1.7E-11 6E-16 120.5 3.6 50 236-291 5-54 (207)
94 3shb_A E3 ubiquitin-protein li 99.1 2.7E-11 9.2E-16 102.6 4.2 56 231-290 20-76 (77)
95 1mh3_A Maltose binding-A1 home 99.1 1.1E-11 3.9E-16 129.8 2.0 54 496-549 366-419 (421)
96 3ask_A E3 ubiquitin-protein li 99.1 2.9E-11 9.9E-16 120.9 4.4 55 232-290 169-224 (226)
97 3o36_A Transcription intermedi 99.1 3E-11 1E-15 116.6 4.0 49 237-291 3-51 (184)
98 3v43_A Histone acetyltransfera 99.1 4.4E-11 1.5E-15 107.4 4.5 61 228-290 51-111 (112)
99 2ro1_A Transcription intermedi 99.0 6.3E-11 2.1E-15 115.5 3.6 48 238-291 2-49 (189)
100 2ysm_A Myeloid/lymphoid or mix 99.0 1.2E-10 4.3E-15 103.8 4.6 74 215-291 29-104 (111)
101 2k16_A Transcription initiatio 99.0 2.1E-10 7.1E-15 95.7 3.3 54 236-292 16-69 (75)
102 2lv9_A Histone-lysine N-methyl 98.8 1.8E-09 6.1E-14 95.0 4.9 56 231-291 21-76 (98)
103 4gne_A Histone-lysine N-methyl 98.8 3.4E-09 1.2E-13 94.9 3.7 49 235-291 12-62 (107)
104 1weu_A Inhibitor of growth fam 98.6 3.4E-08 1.2E-12 86.1 5.5 50 235-291 33-85 (91)
105 2lbm_A Transcriptional regulat 98.6 5.5E-09 1.9E-13 97.9 0.3 49 237-291 62-117 (142)
106 2vnf_A ING 4, P29ING4, inhibit 98.6 1.9E-08 6.5E-13 81.0 2.2 49 236-291 8-59 (60)
107 2ysm_A Myeloid/lymphoid or mix 98.5 4.8E-08 1.6E-12 87.1 4.6 53 234-289 3-55 (111)
108 1wen_A Inhibitor of growth fam 98.5 5.3E-08 1.8E-12 81.1 4.4 49 236-291 14-65 (71)
109 3c6w_A P28ING5, inhibitor of g 98.5 2.4E-08 8.2E-13 80.3 2.2 48 237-291 8-58 (59)
110 2jmi_A Protein YNG1, ING1 homo 98.5 6E-08 2E-12 84.4 3.0 47 236-289 24-74 (90)
111 2g6q_A Inhibitor of growth pro 98.4 5.1E-08 1.8E-12 79.1 2.1 48 237-291 10-60 (62)
112 3ql9_A Transcriptional regulat 98.3 6.6E-08 2.3E-12 89.2 -1.6 50 237-292 56-112 (129)
113 1we9_A PHD finger family prote 98.2 3.4E-07 1.1E-11 74.0 2.1 54 236-291 4-58 (64)
114 1x4i_A Inhibitor of growth pro 98.2 4E-07 1.4E-11 75.6 1.6 51 236-293 4-57 (70)
115 1wee_A PHD finger family prote 98.1 1.3E-06 4.3E-11 72.5 3.9 53 236-291 14-66 (72)
116 3o70_A PHD finger protein 13; 98.1 1.4E-06 4.6E-11 72.0 3.4 51 235-290 16-66 (68)
117 2nzz_A Penetratin conjugated G 98.1 6.4E-07 2.2E-11 65.8 0.4 20 537-556 1-20 (37)
118 2kwj_A Zinc finger protein DPF 97.9 1.6E-06 5.6E-11 77.9 0.3 50 239-289 2-59 (114)
119 2ri7_A Nucleosome-remodeling f 97.9 1.2E-06 4E-11 83.4 -0.7 53 237-292 7-60 (174)
120 2rsd_A E3 SUMO-protein ligase 97.9 7.2E-06 2.5E-10 67.3 3.7 53 236-291 8-65 (68)
121 1wem_A Death associated transc 97.8 1.7E-06 5.9E-11 72.3 -0.8 51 237-291 15-70 (76)
122 1wew_A DNA-binding family prot 97.8 6E-06 2E-10 69.5 2.3 52 236-291 14-72 (78)
123 2xb1_A Pygopus homolog 2, B-ce 97.8 4.6E-06 1.6E-10 74.2 1.5 54 238-292 3-62 (105)
124 2vpb_A Hpygo1, pygopus homolog 97.8 3.1E-06 1.1E-10 69.3 0.3 51 237-289 7-64 (65)
125 1wep_A PHF8; structural genomi 97.7 5.6E-06 1.9E-10 69.8 0.7 52 237-291 11-63 (79)
126 3kqi_A GRC5, PHD finger protei 97.7 9.5E-06 3.2E-10 67.8 1.5 53 236-291 8-61 (75)
127 2kgg_A Histone demethylase jar 97.6 9.3E-06 3.2E-10 63.3 0.1 48 240-289 4-52 (52)
128 1wil_A KIAA1045 protein; ring 97.6 1.7E-05 5.8E-10 67.9 1.5 50 237-290 14-75 (89)
129 3o7a_A PHD finger protein 13 v 97.6 2.7E-05 9.1E-10 60.7 2.2 46 239-289 5-50 (52)
130 3v43_A Histone acetyltransfera 97.5 1.4E-05 4.7E-10 71.6 -0.7 52 238-290 5-63 (112)
131 3kv5_D JMJC domain-containing 97.0 9.4E-05 3.2E-09 81.6 -0.2 53 236-291 35-88 (488)
132 3pur_A Lysine-specific demethy 97.0 0.00023 7.8E-09 78.9 2.6 40 251-291 54-94 (528)
133 3lqh_A Histone-lysine N-methyl 96.9 0.0003 1E-08 68.4 2.2 52 239-291 3-63 (183)
134 3kv4_A PHD finger protein 8; e 96.3 0.00041 1.4E-08 75.8 -1.7 50 239-291 6-56 (447)
135 4bbq_A Lysine-specific demethy 95.8 0.0031 1.1E-07 56.1 1.9 39 252-291 72-114 (117)
136 4gne_A Histone-lysine N-methyl 95.3 0.011 3.7E-07 52.8 3.6 64 214-285 35-98 (107)
137 2ku7_A MLL1 PHD3-CYP33 RRM chi 93.1 0.019 6.4E-07 51.0 0.2 37 254-291 1-44 (140)
138 2ys9_A Homeobox and leucine zi 93.1 0.064 2.2E-06 44.5 3.4 45 502-546 13-57 (70)
139 3rsn_A SET1/ASH2 histone methy 85.8 0.55 1.9E-05 45.4 3.9 46 243-290 9-58 (177)
140 3a1b_A DNA (cytosine-5)-methyl 85.8 0.15 5.1E-06 48.5 -0.1 49 238-291 79-134 (159)
141 2pv0_B DNA (cytosine-5)-methyl 83.4 0.24 8.1E-06 53.2 0.2 51 237-292 92-149 (386)
142 2l0b_A E3 ubiquitin-protein li 80.9 0.33 1.1E-05 40.9 0.1 49 236-291 38-86 (91)
143 1hlv_A CENP-B, major centromer 80.5 1.9 6.4E-05 37.8 5.0 48 498-548 4-51 (131)
144 2d8s_A Cellular modulator of i 79.3 0.2 6.9E-06 42.0 -1.7 51 236-291 13-67 (80)
145 2elh_A CG11849-PA, LD40883P; s 78.4 2.5 8.5E-05 35.2 4.8 45 496-545 17-61 (87)
146 2glo_A Brinker CG9653-PA; prot 78.0 1.7 5.7E-05 33.6 3.3 47 500-547 4-50 (59)
147 3k1l_B Fancl; UBC, ring, RWD, 77.8 0.96 3.3E-05 48.2 2.5 56 236-292 306-371 (381)
148 2ecl_A Ring-box protein 2; RNF 74.8 0.8 2.7E-05 37.8 0.7 27 261-291 47-73 (81)
149 1iym_A EL5; ring-H2 finger, ub 74.7 1.3 4.3E-05 33.1 1.8 48 238-291 5-52 (55)
150 1tc3_C Protein (TC3 transposas 74.1 3.3 0.00011 29.1 3.9 42 501-547 5-46 (51)
151 4bbq_A Lysine-specific demethy 70.3 1.1 3.8E-05 39.5 0.6 37 238-291 7-43 (117)
152 2kiz_A E3 ubiquitin-protein li 68.1 0.78 2.7E-05 36.1 -0.8 49 236-291 12-60 (69)
153 2kn9_A Rubredoxin; metalloprot 67.6 5.6 0.00019 33.8 4.3 22 271-293 50-71 (81)
154 1x4j_A Ring finger protein 38; 67.3 0.57 2E-05 37.6 -1.8 49 236-291 21-69 (75)
155 1vyx_A ORF K3, K3RING; zinc-bi 66.1 0.48 1.7E-05 37.6 -2.4 49 237-291 5-56 (60)
156 2ecm_A Ring finger and CHY zin 65.8 0.96 3.3E-05 33.7 -0.7 48 238-291 5-52 (55)
157 1jko_C HIN recombinase, DNA-in 65.8 3.5 0.00012 29.6 2.4 43 501-548 5-47 (52)
158 2ect_A Ring finger protein 126 64.6 2.7 9.4E-05 33.7 1.8 48 237-291 14-61 (78)
159 2ep4_A Ring finger protein 24; 64.2 0.88 3E-05 36.2 -1.2 48 237-291 14-61 (74)
160 3hug_A RNA polymerase sigma fa 60.7 6.3 0.00021 32.7 3.4 48 501-553 37-84 (92)
161 4a0k_B E3 ubiquitin-protein li 60.6 1.9 6.6E-05 38.7 0.2 27 261-291 83-109 (117)
162 2jn6_A Protein CGL2762, transp 58.0 9.1 0.00031 31.9 4.0 45 500-548 4-49 (97)
163 2o8x_A Probable RNA polymerase 57.7 5 0.00017 30.9 2.2 45 501-550 15-59 (70)
164 2ct0_A Non-SMC element 1 homol 57.4 2.8 9.7E-05 34.7 0.7 46 238-290 15-60 (74)
165 2rn7_A IS629 ORFA; helix, all 55.4 12 0.00041 31.7 4.4 46 500-545 5-53 (108)
166 3l11_A E3 ubiquitin-protein li 55.4 2.1 7.1E-05 37.2 -0.5 49 236-293 13-61 (115)
167 1p4w_A RCSB; solution structur 54.5 12 0.00042 32.1 4.3 44 499-548 32-75 (99)
168 3dpl_R Ring-box protein 1; ubi 54.4 2.5 8.4E-05 37.1 -0.2 27 261-291 72-98 (106)
169 3c57_A Two component transcrip 53.1 8.4 0.00029 32.4 3.0 45 499-549 25-69 (95)
170 1v87_A Deltex protein 2; ring- 52.8 2.2 7.4E-05 36.8 -0.8 31 261-291 60-91 (114)
171 3mzy_A RNA polymerase sigma-H 51.0 12 0.00042 32.7 3.8 48 501-554 109-156 (164)
172 2d8t_A Dactylidin, ring finger 48.7 9.3 0.00032 30.0 2.4 48 236-293 13-60 (71)
173 1fse_A GERE; helix-turn-helix 48.4 7.5 0.00026 30.2 1.8 45 499-549 9-53 (74)
174 2x48_A CAG38821; archeal virus 47.2 13 0.00044 27.6 2.9 39 502-545 14-54 (55)
175 2lq6_A Bromodomain-containing 46.1 6.8 0.00023 33.3 1.3 30 239-271 18-48 (87)
176 2p7v_B Sigma-70, RNA polymeras 45.4 8 0.00028 30.2 1.5 48 501-549 5-52 (68)
177 1iuf_A Centromere ABP1 protein 44.9 15 0.00051 33.3 3.5 49 496-547 6-61 (144)
178 1x3u_A Transcriptional regulat 44.4 5.9 0.0002 31.4 0.6 43 502-550 17-59 (79)
179 1s7o_A Hypothetical UPF0122 pr 43.8 15 0.00051 32.3 3.2 47 501-552 22-68 (113)
180 2xi8_A Putative transcription 43.5 8.9 0.0003 28.7 1.5 24 525-548 17-40 (66)
181 2r1j_L Repressor protein C2; p 42.8 9.2 0.00032 28.8 1.5 25 524-548 20-44 (68)
182 1ku3_A Sigma factor SIGA; heli 42.6 16 0.00056 28.8 3.0 51 500-551 9-59 (73)
183 3bd1_A CRO protein; transcript 42.0 9.4 0.00032 30.4 1.5 25 524-548 13-37 (79)
184 1zug_A Phage 434 CRO protein; 41.2 10 0.00034 28.9 1.5 25 524-548 18-42 (71)
185 1je8_A Nitrate/nitrite respons 39.9 8.5 0.00029 31.5 0.9 45 499-549 19-63 (82)
186 3ng2_A RNF4, snurf, ring finge 39.7 2 7E-05 33.5 -2.8 50 237-291 9-60 (71)
187 3bs3_A Putative DNA-binding pr 39.6 11 0.00038 29.1 1.5 25 524-548 25-49 (76)
188 1e4u_A Transcriptional repress 39.1 10 0.00036 31.2 1.3 50 237-291 10-59 (78)
189 2rnj_A Response regulator prot 38.4 12 0.00041 30.9 1.6 45 499-549 27-71 (91)
190 3fmy_A HTH-type transcriptiona 37.9 25 0.00086 27.7 3.4 41 501-548 10-50 (73)
191 3nw0_A Non-structural maintena 37.7 8.8 0.0003 38.3 0.8 46 238-290 180-225 (238)
192 4ayc_A E3 ubiquitin-protein li 37.6 6.7 0.00023 35.2 -0.1 44 238-291 53-96 (138)
193 3lrq_A E3 ubiquitin-protein li 37.4 3.8 0.00013 34.9 -1.7 48 237-292 21-68 (100)
194 1weq_A PHD finger protein 7; s 37.3 21 0.00071 30.6 2.9 33 253-289 44-77 (85)
195 1adr_A P22 C2 repressor; trans 36.9 13 0.00044 28.7 1.5 25 524-548 20-44 (76)
196 2ckl_B Ubiquitin ligase protei 36.7 4.5 0.00015 37.3 -1.5 48 237-292 53-100 (165)
197 1r69_A Repressor protein CI; g 36.6 13 0.00045 28.0 1.5 24 525-548 17-40 (69)
198 3omt_A Uncharacterized protein 36.5 13 0.00046 28.8 1.5 25 524-548 23-47 (73)
199 2b5a_A C.BCLI; helix-turn-heli 36.3 13 0.00046 28.7 1.5 25 524-548 25-49 (77)
200 1rp3_A RNA polymerase sigma fa 36.0 20 0.00067 33.6 2.9 47 501-552 187-233 (239)
201 3kz3_A Repressor protein CI; f 35.2 14 0.00048 29.4 1.5 25 524-548 27-51 (80)
202 1u78_A TC3 transposase, transp 34.2 37 0.0013 29.3 4.2 43 500-547 5-47 (141)
203 1y7y_A C.AHDI; helix-turn-heli 34.1 15 0.00053 28.1 1.5 25 524-548 28-52 (74)
204 2ecn_A Ring finger protein 141 34.0 12 0.00039 29.2 0.8 44 237-291 14-57 (70)
205 4cpa_I Metallocarboxypeptidase 34.0 20 0.00069 25.9 1.9 23 268-290 6-29 (38)
206 3b7h_A Prophage LP1 protein 11 33.9 16 0.00055 28.4 1.6 24 524-547 22-45 (78)
207 1rzs_A Antirepressor, regulato 33.8 16 0.00056 28.3 1.6 20 524-543 12-31 (61)
208 2ct2_A Tripartite motif protei 33.5 10 0.00035 30.6 0.4 52 237-291 14-65 (88)
209 1xsv_A Hypothetical UPF0122 pr 33.0 29 0.001 30.2 3.3 48 501-553 25-72 (113)
210 2ea6_A Ring finger protein 4; 32.3 3.6 0.00012 31.7 -2.5 50 237-291 14-65 (69)
211 2ysl_A Tripartite motif-contai 32.1 21 0.00071 27.8 2.0 48 237-291 19-66 (73)
212 2rgt_A Fusion of LIM/homeobox 32.0 0.85 2.9E-05 42.6 -7.3 29 495-523 136-164 (169)
213 2kpj_A SOS-response transcript 31.3 18 0.00061 29.7 1.5 25 524-548 24-48 (94)
214 2a6c_A Helix-turn-helix motif; 30.9 18 0.00063 29.1 1.5 24 524-547 33-56 (83)
215 1or7_A Sigma-24, RNA polymeras 30.8 28 0.00094 31.6 2.9 47 501-552 140-186 (194)
216 2xeu_A Ring finger protein 4; 30.0 2.9 9.8E-05 31.8 -3.4 50 238-292 3-54 (64)
217 1jm7_B BARD1, BRCA1-associated 30.0 23 0.00078 30.7 2.1 43 238-291 22-64 (117)
218 1chc_A Equine herpes virus-1 r 29.7 7.9 0.00027 29.9 -0.9 45 238-291 5-49 (68)
219 2k27_A Paired box protein PAX- 29.7 65 0.0022 28.9 5.2 44 500-548 24-67 (159)
220 2ef8_A C.ECOT38IS, putative tr 29.5 20 0.00069 28.2 1.5 25 524-548 25-49 (84)
221 3f6w_A XRE-family like protein 28.8 21 0.00071 28.3 1.5 25 524-548 29-53 (83)
222 2wiu_B HTH-type transcriptiona 28.7 21 0.00073 28.4 1.6 25 524-548 27-51 (88)
223 2enn_A NPKC-theta, protein kin 28.6 28 0.00097 28.5 2.3 35 238-273 34-68 (77)
224 2k9q_A Uncharacterized protein 28.4 21 0.0007 28.1 1.4 25 524-548 17-41 (77)
225 1pdn_C Protein (PRD paired); p 28.0 41 0.0014 28.2 3.3 42 501-547 17-58 (128)
226 2egp_A Tripartite motif-contai 27.9 29 0.00099 27.3 2.2 50 237-292 11-63 (79)
227 3bdn_A Lambda repressor; repre 27.6 26 0.00088 33.4 2.2 25 524-548 32-56 (236)
228 1zbd_B Rabphilin-3A; G protein 27.3 63 0.0022 29.5 4.6 57 238-295 55-111 (134)
229 2zet_C Melanophilin; complex, 27.3 31 0.0011 32.3 2.6 54 237-294 67-120 (153)
230 2lv7_A Calcium-binding protein 27.2 68 0.0023 26.9 4.5 47 498-544 26-79 (100)
231 2kvr_A Ubiquitin carboxyl-term 26.9 28 0.00095 31.6 2.1 24 525-548 72-95 (130)
232 2ict_A Antitoxin HIGA; helix-t 26.6 23 0.00079 28.9 1.4 25 524-548 23-47 (94)
233 2yuu_A NPKC-delta, protein kin 26.4 32 0.0011 28.4 2.3 33 239-272 29-61 (83)
234 2ysj_A Tripartite motif-contai 26.1 8.3 0.00029 29.5 -1.3 45 237-288 19-63 (63)
235 1tty_A Sigma-A, RNA polymerase 26.1 24 0.00083 28.9 1.4 49 501-550 18-66 (87)
236 1lmb_3 Protein (lambda repress 25.9 25 0.00085 28.4 1.5 25 524-548 32-56 (92)
237 2hin_A GP39, repressor protein 25.6 25 0.00085 28.7 1.4 24 525-548 13-36 (71)
238 3s8q_A R-M controller protein; 25.5 26 0.0009 27.6 1.5 25 524-548 26-50 (82)
239 2enz_A NPKC-theta, protein kin 25.3 40 0.0014 26.5 2.5 33 239-272 24-56 (65)
240 3t76_A VANU, transcriptional r 25.2 26 0.0009 29.3 1.5 25 524-548 39-63 (88)
241 1bor_A Transcription factor PM 24.9 52 0.0018 24.7 3.1 42 237-291 5-46 (56)
242 2l49_A C protein; P2 bacteriop 24.8 28 0.00097 28.4 1.7 25 524-548 19-43 (99)
243 2q0o_A Probable transcriptiona 24.5 44 0.0015 32.1 3.2 44 500-549 174-217 (236)
244 1u78_A TC3 transposase, transp 24.4 78 0.0027 27.1 4.6 44 501-548 60-105 (141)
245 1k78_A Paired box protein PAX5 24.3 1E+02 0.0035 27.1 5.4 47 499-548 88-144 (149)
246 3qq6_A HTH-type transcriptiona 24.2 29 0.001 27.6 1.6 22 524-545 25-46 (78)
247 2jpc_A SSRB; DNA binding prote 24.0 20 0.00068 26.9 0.5 24 526-549 17-40 (61)
248 3fl2_A E3 ubiquitin-protein li 23.9 11 0.00039 32.9 -1.1 47 237-292 51-97 (124)
249 2ecj_A Tripartite motif-contai 23.8 22 0.00074 26.3 0.7 45 237-288 14-58 (58)
250 1x57_A Endothelial differentia 23.4 28 0.00096 28.2 1.4 25 524-548 28-52 (91)
251 3i5g_B Myosin regulatory light 23.4 1.2E+02 0.004 27.0 5.6 40 499-538 7-51 (153)
252 3ulq_B Transcriptional regulat 22.8 58 0.002 27.2 3.2 44 499-548 27-70 (90)
253 2ckl_A Polycomb group ring fin 22.5 17 0.00058 30.9 -0.2 47 237-292 14-60 (108)
254 1k78_A Paired box protein PAX5 22.5 56 0.0019 28.8 3.3 43 500-547 31-73 (149)
255 3t72_q RNA polymerase sigma fa 22.3 65 0.0022 27.6 3.5 51 501-552 19-69 (99)
256 2eli_A Protein kinase C alpha 22.1 50 0.0017 27.5 2.6 34 238-272 28-61 (85)
257 3eus_A DNA-binding protein; st 21.9 27 0.00093 28.3 0.9 25 524-548 29-53 (86)
258 2ecw_A Tripartite motif-contai 21.9 13 0.00043 29.6 -1.1 49 237-291 18-68 (85)
259 2csy_A Zinc finger protein 183 21.7 15 0.0005 29.6 -0.7 46 237-292 14-59 (81)
260 2ppx_A AGR_C_3184P, uncharacte 21.6 34 0.0012 28.4 1.5 25 524-548 45-69 (99)
261 2yur_A Retinoblastoma-binding 21.5 23 0.00078 28.1 0.4 48 237-291 14-61 (74)
262 2qko_A Possible transcriptiona 21.1 41 0.0014 30.6 2.1 42 507-549 34-75 (215)
263 2k1p_A Zinc finger RAN-binding 21.1 30 0.001 24.2 0.9 10 280-289 4-13 (33)
264 2pmy_A RAS and EF-hand domain- 21.0 50 0.0017 26.5 2.4 46 500-545 19-69 (91)
265 2lk0_A RNA-binding protein 5; 21.0 24 0.00081 24.6 0.3 11 280-290 3-13 (32)
266 2ofy_A Putative XRE-family tra 21.0 36 0.0012 27.1 1.5 24 524-547 29-52 (86)
267 4ap4_A E3 ubiquitin ligase RNF 20.9 12 0.00042 32.2 -1.5 51 237-292 6-58 (133)
268 2ecy_A TNF receptor-associated 20.7 16 0.00056 28.1 -0.6 46 237-291 14-59 (66)
269 1fi6_A EH domain protein REPS1 20.7 65 0.0022 26.2 3.1 44 501-544 2-50 (92)
270 1ptq_A Protein kinase C delta 20.6 40 0.0014 24.8 1.5 33 239-272 12-44 (50)
271 1faq_A RAF-1; transferase, ser 20.6 50 0.0017 24.5 2.1 29 239-272 15-43 (52)
272 2ewt_A BLDD, putative DNA-bind 20.4 37 0.0012 25.8 1.4 25 524-548 23-49 (71)
273 2v79_A DNA replication protein 20.2 75 0.0026 28.7 3.6 45 501-548 29-77 (135)
274 2q1z_A RPOE, ECF SIGE; ECF sig 20.1 18 0.00062 32.7 -0.6 46 501-552 135-181 (184)
275 3o9x_A Uncharacterized HTH-typ 20.0 42 0.0014 29.3 1.8 41 501-548 70-110 (133)
No 1
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=143.00 Aligned_cols=65 Identities=29% Similarity=0.438 Sum_probs=59.4
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 555 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~ 555 (628)
...+.+|.|++||.+|+.+||.+|..++||+..++++||..|||++.||++||||||++.+|...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 34556888999999999999999999999999999999999999999999999999997776654
No 2
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=144.53 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=60.1
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhh
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 556 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~~ 556 (628)
+..+.||.|++||.+|+.+||.+|..++||+..+++.||..|||++.||+|||||||++.+|....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 345678889999999999999999999999999999999999999999999999999977776543
No 3
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=3.1e-18 Score=144.76 Aligned_cols=65 Identities=23% Similarity=0.442 Sum_probs=59.3
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 555 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~ 555 (628)
...+.+|.|++||.+|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|..+
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 34667888999999999999999999999999999999999999999999999999997666553
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.2e-18 Score=143.80 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=58.3
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
+..+.+|+|++||..|+.+||.+|..++||+..++++||..|||++.||+|||||||++.+|..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 4466788899999999999999999999999999999999999999999999999999655544
No 5
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3.6e-18 Score=144.53 Aligned_cols=68 Identities=21% Similarity=0.407 Sum_probs=61.1
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhhhh
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKVES 558 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~~~~ 558 (628)
++...+|.|++||..|+.+||.+|..++||+..++++||..|||++.||+|||||||++.+|..+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 34566888999999999999999999999999999999999999999999999999998777765443
No 6
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-18 Score=142.96 Aligned_cols=65 Identities=31% Similarity=0.366 Sum_probs=58.9
Q ss_pred CCccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 490 PSNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 490 ~~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
++..+.+|+|++||..|+.+||.+|..++||+..++++||..|||++.||++||||||++.+|..
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34566788899999999999999999999999999999999999999999999999999665544
No 7
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=2.9e-18 Score=141.46 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=58.9
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 555 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~ 555 (628)
+....+|++++||.+|+.+||.+|..++||+..++++||..|||++.||++||||||++.++...
T Consensus 3 ~~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 34566778899999999999999999999999999999999999999999999999997766653
No 8
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=2e-18 Score=142.16 Aligned_cols=64 Identities=22% Similarity=0.393 Sum_probs=58.5
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
+..+.+|+|++||.+|+.+||.+|..++||+..++++||..|||++.||++||||||++.+|..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4466788899999999999999999999999999999999999999999999999999665544
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.72 E-value=6.4e-18 Score=141.98 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=59.7
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhh
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 556 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~~ 556 (628)
...+.+|.|++||..|+..||.+|..++||+..+|++||..|||++.||+|||||||++.+|....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 345667889999999999999999999999999999999999999999999999999977666543
No 10
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-18 Score=142.81 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=58.3
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
+..+.+|+|++||..|+.+||.+|..++||+..++++||..|||++.||++||||||++.+|..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 4466788899999999999999999999999999999999999999999999999999655543
No 11
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3e-18 Score=144.98 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=58.0
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 492 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 492 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
..+.+|.|+.||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 456678899999999999999999999999999999999999999999999999999666554
No 12
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=4.9e-18 Score=144.41 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=55.8
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006856 492 NAKIRRSFHRMPPNAVEKLRQVFAE----NELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 551 (628)
Q Consensus 492 ~~k~kR~r~rft~~Q~~~Le~~F~~----~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~ 551 (628)
..+.||.|+.||.+|+.+||.+|.. ++||+..+|++||..|||++.||+|||||||++.+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCC
Confidence 3567888999999999999999999 99999999999999999999999999999999543
No 13
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=4.4e-18 Score=143.23 Aligned_cols=63 Identities=24% Similarity=0.408 Sum_probs=57.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 492 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 492 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
..+.+|.|++||.+|+.+||.+|..++||+..++++||.+|||++.||+|||||||++.+|..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 356688899999999999999999999999999999999999999999999999999655543
No 14
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.70 E-value=8.9e-18 Score=135.85 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=54.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006856 495 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 553 (628)
Q Consensus 495 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~ 553 (628)
.+|.|+.||..|+..||.+|..++||+..++.+||..|||++.||++||||||++.+|.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 47788999999999999999999999999999999999999999999999999966654
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1.1e-17 Score=132.89 Aligned_cols=57 Identities=25% Similarity=0.372 Sum_probs=53.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 496 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 496 kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
||+|+.||.+|+..||.+|..++||+..++.+||..|||++.||++||||||++.+|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 567899999999999999999999999999999999999999999999999996554
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.70 E-value=7.1e-18 Score=135.46 Aligned_cols=58 Identities=28% Similarity=0.462 Sum_probs=51.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 495 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 495 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
.+|+|+.||..|+..||.+|..++||+..++++||..|||++.||++||||||++.+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4778899999999999999999999999999999999999999999999999996544
No 17
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=7.2e-18 Score=143.49 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=58.2
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
...+.+|.|+.||..|+.+||.+|..++||+..+|+.||..|||++.||+|||||||++.+|..
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999999999999999999999655543
No 18
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.70 E-value=1.1e-17 Score=134.02 Aligned_cols=58 Identities=22% Similarity=0.392 Sum_probs=54.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006856 496 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 553 (628)
Q Consensus 496 kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~ 553 (628)
||.|+.||..|+..||.+|..++||+..++.+||..|||++.||++||||+|++.+|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6788999999999999999999999999999999999999999999999999977664
No 19
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.69 E-value=1.1e-17 Score=137.55 Aligned_cols=61 Identities=23% Similarity=0.313 Sum_probs=56.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006856 495 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 555 (628)
Q Consensus 495 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~ 555 (628)
++|.|+.||..|+..||.+|..++||+..++++||..|||++.||+|||||||++.+|..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 3678899999999999999999999999999999999999999999999999997776653
No 20
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=1.7e-17 Score=144.52 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=61.2
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhhhh
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKVES 558 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~~~~ 558 (628)
...+.+|+|+.||..|+..||.+|..++||+..+|..||..|||++.||+|||||||++.+|....+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 34567888999999999999999999999999999999999999999999999999998877765443
No 21
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.69 E-value=8.6e-18 Score=135.40 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=50.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 494 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 494 k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
+.+|+|+.||..|+.+||.+|..++||+..++++||..|||++.||++||||||++.+|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 35778899999999999999999999999999999999999999999999999995444
No 22
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=1.9e-17 Score=135.93 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=57.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhh
Q 006856 495 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 556 (628)
Q Consensus 495 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~~ 556 (628)
.+|.|+.||..|+..||.+|..++||+..++..||..|||++.||+|||||||++.++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 46788999999999999999999999999999999999999999999999999977776543
No 23
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.69 E-value=1.9e-17 Score=135.95 Aligned_cols=61 Identities=26% Similarity=0.418 Sum_probs=56.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006856 495 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 555 (628)
Q Consensus 495 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~ 555 (628)
++|.|++||..|+..||.+|..++||+..++.+||..|||++.||++||||||++.+|..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4678899999999999999999999999999999999999999999999999997766653
No 24
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.69 E-value=2.8e-17 Score=138.06 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=58.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006856 493 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 555 (628)
Q Consensus 493 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~ 555 (628)
.+.+|.|++||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|..+
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 456778899999999999999999999999999999999999999999999999997776654
No 25
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.69 E-value=2.2e-17 Score=139.90 Aligned_cols=64 Identities=23% Similarity=0.455 Sum_probs=58.0
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006856 492 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 555 (628)
Q Consensus 492 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~ 555 (628)
..+.+|.|++||..|+..||.+|..++||+..+|..||..|||++.||++||||||++.+|...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 3556788999999999999999999999999999999999999999999999999997777653
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.69 E-value=9.1e-18 Score=137.74 Aligned_cols=62 Identities=24% Similarity=0.388 Sum_probs=57.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006856 494 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 555 (628)
Q Consensus 494 k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~ 555 (628)
+.+|.|+.||..|+..||.+|..++||+..++.+||..|||++.||++||||||++.+|..+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 45788899999999999999999999999999999999999999999999999997666554
No 27
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.69 E-value=1.1e-17 Score=136.46 Aligned_cols=59 Identities=29% Similarity=0.476 Sum_probs=54.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 494 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 494 k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
+.+|+|+.||.+|+..||.+|..++||+..++++||..|||++.||++||||||++.+|
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhH
Confidence 45788999999999999999999999999999999999999999999999999995443
No 28
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.1e-17 Score=136.24 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=57.8
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 492 NAKIRRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 492 ~~k~kR~r~rft~~Q~~~Le~~F~~---~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
..+.+|.+++|+..|+.+|+.+|.+ ++||+..+|++||..|||++.||++||||+|++.++..
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 4566788899999999999999987 99999999999999999999999999999999776654
No 29
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.68 E-value=1.3e-17 Score=133.74 Aligned_cols=57 Identities=26% Similarity=0.405 Sum_probs=47.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006856 493 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 493 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
.+.+|.+++||..|+..||.+|..++||+..++.+||..|||++.||++||||+|++
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 456778899999999999999999999999999999999999999999999999994
No 30
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.68 E-value=3.9e-17 Score=139.51 Aligned_cols=64 Identities=27% Similarity=0.377 Sum_probs=58.0
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~---~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
+..+.+|+|++|+.+|+.+|+.+|.+ ++||+..+|++||..|||++.||+|||||+|++.++..
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 44567788899999999999999998 59999999999999999999999999999999776654
No 31
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.68 E-value=1.1e-17 Score=142.37 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=54.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006856 492 NAKIRRSFHRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 551 (628)
Q Consensus 492 ~~k~kR~r~rft~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~ 551 (628)
..+.||.|+.||.+|+.+|| .|.+ ++||+..+|++||.+|||++.||+|||||||++.+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCC
Confidence 45678889999999999999 7999 99999999999999999999999999999999543
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.68 E-value=2e-17 Score=137.68 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=56.7
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 493 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 493 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
.+.+|.|++||..|+..||.+|..++||+..+|++||..|||++.||++||||||++.+|..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999555543
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.67 E-value=2.1e-17 Score=140.33 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=53.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 493 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 493 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
...+|.|+.||..|+..||.+|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45678899999999999999999999999999999999999999999999999999766654
No 34
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-17 Score=136.54 Aligned_cols=58 Identities=21% Similarity=0.418 Sum_probs=53.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 497 RSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 497 R~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
+++++||.+|+.+||.+|..++||+..+|.+||..|||++.||+|||||||++.+|..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 4456789999999999999999999999999999999999999999999999766655
No 35
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-17 Score=139.56 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=57.1
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006856 492 NAKIRRSFHRMPPNAVEKLRQVFAEN----ELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 553 (628)
Q Consensus 492 ~~k~kR~r~rft~~Q~~~Le~~F~~~----~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~ 553 (628)
..+.+|.|+.||.+|+.+||.+|..+ +||+..+|++||.+|||++.||+|||||||++.+|.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 35567888999999999999999999 999999999999999999999999999999966553
No 36
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=5.6e-17 Score=141.50 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=60.3
Q ss_pred CCccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------------CCcchhhhccchhccHHHHhh
Q 006856 490 PSNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELS---------------LEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 490 ~~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lg---------------Lt~~QVkiWFqNrR~k~~K~~ 554 (628)
++..+.+|.|+.|++.|+.+||.+|..++||+..+|++||..|| |++.||++||||||++.+|..
T Consensus 2 ~~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 2 SSGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CSSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 34567788999999999999999999999999999999999999 999999999999999776665
Q ss_pred h
Q 006856 555 K 555 (628)
Q Consensus 555 ~ 555 (628)
+
T Consensus 82 ~ 82 (95)
T 2cuf_A 82 N 82 (95)
T ss_dssp H
T ss_pred h
Confidence 4
No 37
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.66 E-value=4.1e-17 Score=128.88 Aligned_cols=56 Identities=25% Similarity=0.406 Sum_probs=52.9
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006856 495 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 550 (628)
Q Consensus 495 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~ 550 (628)
++|.+++||..|+..||.+|..++||+..++.+||..|||++.||++||||||++.
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 46778999999999999999999999999999999999999999999999999953
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.66 E-value=3.4e-17 Score=131.08 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 498 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 498 ~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
+|++||.+|+..||.+|..++||+..++++||..|||++.||++||||||++.+|..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 357899999999999999999999999999999999999999999999999766654
No 39
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.66 E-value=7.5e-17 Score=133.98 Aligned_cols=62 Identities=27% Similarity=0.440 Sum_probs=56.9
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006856 492 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 553 (628)
Q Consensus 492 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~ 553 (628)
.++.+|.|++||..|+..||.+|..++||+..++++||..|||++.||+|||||||++.+|.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999955544
No 40
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=5.9e-17 Score=136.89 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=50.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006856 499 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 553 (628)
Q Consensus 499 r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~ 553 (628)
+.+||.+|+.+|+.+|..|+||+..+|++||..|||++.||+|||||+|++.++.
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999965544
No 41
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.66 E-value=4.2e-17 Score=140.31 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=53.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006856 493 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 553 (628)
Q Consensus 493 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~ 553 (628)
.+.+|.|+.||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 4567888999999999999999999999999999999999999999999999999966554
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.65 E-value=5.1e-17 Score=132.81 Aligned_cols=58 Identities=31% Similarity=0.519 Sum_probs=54.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006856 496 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 553 (628)
Q Consensus 496 kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~ 553 (628)
||+|++||++|+..||.+|..++||+..+++.||..|||++.||++||||||++.+|.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 6778999999999999999999999999999999999999999999999999955443
No 43
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=7.6e-17 Score=140.05 Aligned_cols=55 Identities=11% Similarity=0.235 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 500 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
.+||.+|+.+||..|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3789999999999999999999999999999999999999999999999555544
No 44
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=8.9e-17 Score=133.72 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=54.4
Q ss_pred CCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 496 RRSFHRMPPNAVEKLRQVFA-ENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 496 kR~r~rft~~Q~~~Le~~F~-~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
++.|++||.+|+.+||.+|. .++||+..+|++||..|||++.||++||||||++.+|..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 45678899999999999999 599999999999999999999999999999999766655
No 45
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.65 E-value=6.9e-17 Score=127.85 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006856 500 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 553 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~ 553 (628)
+.||..|+..||..|..++||+..+|.+||..|||++.||++||||||++.+|+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999976653
No 46
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.65 E-value=8.2e-17 Score=133.67 Aligned_cols=61 Identities=31% Similarity=0.418 Sum_probs=56.4
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhh
Q 006856 496 RRSFHRMPPNAVEKLRQVF---AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 556 (628)
Q Consensus 496 kR~r~rft~~Q~~~Le~~F---~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~~ 556 (628)
||++++||..|+..|+.+| ..++||+..+|..||..|||++.||++||||+|++.++....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6778899999999999999 899999999999999999999999999999999977776543
No 47
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=9.7e-17 Score=133.02 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 497 RSFHRMPPNAVEKLRQVFAE-NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 497 R~r~rft~~Q~~~Le~~F~~-~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
+.+++||..|+.+||.+|.. ++||+..+|++||..|||++.||++||||||++.+|..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 45688999999999999996 99999999999999999999999999999999766655
No 48
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.64 E-value=9.3e-17 Score=137.46 Aligned_cols=61 Identities=31% Similarity=0.418 Sum_probs=56.1
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhh
Q 006856 496 RRSFHRMPPNAVEKLRQVF---AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 556 (628)
Q Consensus 496 kR~r~rft~~Q~~~Le~~F---~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~~ 556 (628)
||+|++|+..|+.+|+.+| ..++||+..+|++||..|||++.||++||||||++.+|....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6778999999999999999 899999999999999999999999999999999988777643
No 49
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.2e-16 Score=139.81 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=54.2
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 493 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 493 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
...+|.|+.||..|+..||.+|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 45677889999999999999999999999999999999999999999999999999766654
No 50
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.4e-16 Score=131.46 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=55.8
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAE-NELPSRIVKENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~-~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
+.+..||.|+.|+.+|+.+|+.+|+. ++||+...|..||.+|||++++|+|||||+|+.
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 44677899999999999999999999 999999999999999999999999999999993
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=6.1e-17 Score=131.08 Aligned_cols=58 Identities=31% Similarity=0.387 Sum_probs=53.4
Q ss_pred cCCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 495 IRRSFHRMPPNAVEKLRQVF---AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 495 ~kR~r~rft~~Q~~~Le~~F---~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
.+|.+++|+..|+..|+.+| ..++||+..++++||..|||++.||++||||+|++.+|
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 36677889999999999999 89999999999999999999999999999999996543
No 52
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=132.41 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=55.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 494 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 494 k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
..++.|+.||.+|+..||.+|..++||+..++++||..|||++.||++||||||++.+|..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 3467789999999999999999999999999999999999999999999999999554443
No 53
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-16 Score=132.48 Aligned_cols=59 Identities=24% Similarity=0.442 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 496 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 496 kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
.+.|++||.+|+.+||.+|..++||+..+|++||..|||++.||++||||||++.+|..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34468899999999999999999999999999999999999999999999999554443
No 54
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.63 E-value=1.6e-16 Score=135.48 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=52.5
Q ss_pred CCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 497 RSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 497 R~r~rft~~Q~~~Le~~F~~---~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
+++++||.+|+..|+.+|.. ++||+..+|..||..|||++.||++||||||++.++..
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 34566999999999999999 99999999999999999999999999999999665554
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.62 E-value=2.1e-16 Score=126.36 Aligned_cols=54 Identities=30% Similarity=0.332 Sum_probs=50.6
Q ss_pred CCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 499 FHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 499 r~rft~~Q~~~Le~~F~~---~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
+++||.+|+.+||.+|.. ++||+..++++||..|||++.||++||||+|++.+|
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 478999999999999999 999999999999999999999999999999995443
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.8e-16 Score=134.46 Aligned_cols=56 Identities=21% Similarity=0.421 Sum_probs=50.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 499 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 499 r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
+.+||.+|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.++..
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 34589999999999999999999999999999999999999999999999554444
No 57
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.61 E-value=3.2e-16 Score=137.04 Aligned_cols=61 Identities=21% Similarity=0.403 Sum_probs=53.7
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006856 493 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 553 (628)
Q Consensus 493 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~ 553 (628)
...+|.|++||..|+..||.+|..++||+..+|++||..|||++.||++||||||++.+|.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 4456778999999999999999999999999999999999999999999999999965553
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.59 E-value=7.1e-16 Score=132.37 Aligned_cols=58 Identities=28% Similarity=0.299 Sum_probs=53.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006856 493 AKIRRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 550 (628)
Q Consensus 493 ~k~kR~r~rft~~Q~~~Le~~F~~---~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~ 550 (628)
.++++++++|+..|+..|+.+|.. ++||+..+|+.||..|||++.||++||||||++.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~ 85 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 85 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhc
Confidence 345566889999999999999999 9999999999999999999999999999999943
No 59
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=134.29 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=58.4
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh---------------------CCCcchhhhccchhccH
Q 006856 491 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKEL---------------------SLEPEKVNKWFKNARYL 549 (628)
Q Consensus 491 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~l---------------------gLt~~QVkiWFqNrR~k 549 (628)
+.+++||.|+.|++.|+.+||.+|..++||+..+|++||..| +|++.+|+|||||||++
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 456778899999999999999999999999999999999999 79999999999999996
Q ss_pred HHHhh
Q 006856 550 ALKAR 554 (628)
Q Consensus 550 ~~K~~ 554 (628)
.++..
T Consensus 82 ~kr~~ 86 (102)
T 2da6_A 82 EAFRQ 86 (102)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 65544
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.57 E-value=1.1e-15 Score=125.71 Aligned_cols=49 Identities=20% Similarity=0.454 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006856 503 PPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 551 (628)
Q Consensus 503 t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~ 551 (628)
|.+|+.+||..|..++||+..+|++||..|||++.||++||||||++.+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~K 60 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQ 60 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhh
Confidence 8999999999999999999999999999999999999999999999544
No 61
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=4e-16 Score=130.08 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=50.1
Q ss_pred CCCCCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006856 497 RSFHRMPPNAVEKLRQVF-AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 551 (628)
Q Consensus 497 R~r~rft~~Q~~~Le~~F-~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~ 551 (628)
+.+.+++.+|+.+||.+| ..++||+..+|++||..|||++.||+|||||||++.+
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r 65 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 65 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCC
Confidence 344567999999999999 9999999999999999999999999999999999443
No 62
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.56 E-value=1.6e-15 Score=142.69 Aligned_cols=61 Identities=31% Similarity=0.493 Sum_probs=56.3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 492 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 492 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
..++||+|+.||..|+..||.+|..++||+..+|++||..|||++.||+|||||||++.+|
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3566788899999999999999999999999999999999999999999999999995543
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.56 E-value=1.1e-15 Score=143.30 Aligned_cols=61 Identities=30% Similarity=0.409 Sum_probs=53.4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 492 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 492 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
..++||+|+.||..|+..||.+|..++||+..+|.+||..|||++.||+|||||||++.+|
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhc
Confidence 3566788999999999999999999999999999999999999999999999999996544
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.55 E-value=1.1e-15 Score=146.08 Aligned_cols=63 Identities=24% Similarity=0.286 Sum_probs=50.8
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006856 493 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 555 (628)
Q Consensus 493 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~ 555 (628)
.++||+|++||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|..+
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 566788999999999999999999999999999999999999999999999999996665543
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.54 E-value=2.1e-15 Score=143.39 Aligned_cols=60 Identities=23% Similarity=0.387 Sum_probs=52.7
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 493 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 493 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
.++||+|+.||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 466788999999999999999999999999999999999999999999999999996554
No 66
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.54 E-value=1.5e-15 Score=134.31 Aligned_cols=59 Identities=29% Similarity=0.430 Sum_probs=50.3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH------------------hC---CCcchhhhccchhccHH
Q 006856 492 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKE------------------LS---LEPEKVNKWFKNARYLA 550 (628)
Q Consensus 492 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~------------------lg---Lt~~QVkiWFqNrR~k~ 550 (628)
.++.||.|+.||+.|+.+||.+|..++||+..+|++||.. || |++.||++||||||++.
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3567888999999999999999999999999999999999 88 99999999999999943
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.54 E-value=3.5e-15 Score=123.77 Aligned_cols=54 Identities=28% Similarity=0.475 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006856 500 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 553 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~ 553 (628)
..+|..|+.+||..|..++||+..+|.+||..|||++.||+|||||||++.+|.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 468999999999999999999999999999999999999999999999954443
No 68
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=3e-15 Score=123.04 Aligned_cols=55 Identities=27% Similarity=0.381 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006856 501 RMPPNAVEKLRQVFA---ENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 555 (628)
Q Consensus 501 rft~~Q~~~Le~~F~---~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~ 555 (628)
+||.+|+..|+.+|. .+|||+..+|++||..|||++.||++||||+|++.+|...
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 689999999999999 9999999999999999999999999999999997766543
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.8e-15 Score=121.56 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006856 500 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
..++.+|+..||.+|..++||+..+|++||..|||++.||+|||||||++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak 57 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAG 57 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCC
Confidence 44679999999999999999999999999999999999999999999993
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.52 E-value=2.7e-15 Score=142.60 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=53.2
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 493 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 493 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
.+.||+|+.||..|+..|+.+|..++||+..+|++||..|||++.||+|||||||++.++..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 55678899999999999999999999999999999999999999999999999999655444
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.50 E-value=2.9e-15 Score=122.71 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=43.2
Q ss_pred HHHHHHHHHHH-HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006856 504 PNAVEKLRQVF-AENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 504 ~~Q~~~Le~~F-~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
+.|+.+||.+| ..++||+..+|.+||.+|||++.||+|||||||++
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k 55 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQ 55 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 45899999999 57999999999999999999999999999999993
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.49 E-value=7.6e-15 Score=138.89 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=55.7
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 493 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 493 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
.+.||+|+.|+..|+..||.+|..++||+..+|.+||..|||++.||+|||||||++.+|
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 456778899999999999999999999999999999999999999999999999996544
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.39 E-value=3e-13 Score=117.42 Aligned_cols=56 Identities=36% Similarity=0.461 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006856 500 HRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 555 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~---~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~~ 555 (628)
+-|+..++..|+.+|.+ +|||+..+|++||+++||++.||++||||+|.+.++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 46899999999999998 899999999999999999999999999999998777653
No 74
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.37 E-value=2.7e-13 Score=117.52 Aligned_cols=58 Identities=28% Similarity=0.749 Sum_probs=50.1
Q ss_pred cCCCCccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchh
Q 006856 229 ATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKM 292 (628)
Q Consensus 229 ~~dg~~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~ 292 (628)
..+.+...+..+|.+|+. +++||+|| .|+++||++||.|||..+|.+.|||+.|....
T Consensus 16 ~~~~~~d~n~~~C~vC~~-----~g~LL~CD-~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 16 DEFGTLDDSATICRVCQK-----PGDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp CCCCSSSSSSSCCSSSCS-----SSCCEECT-TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred ccccccCCCCCcCcCcCC-----CCCEEECC-CCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 344555667789999996 56899999 59999999999999999999999999998654
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.37 E-value=8.9e-14 Score=136.39 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=51.9
Q ss_pred CCccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------------------CCcchhhhccchhcc
Q 006856 490 PSNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELS---------------------LEPEKVNKWFKNARY 548 (628)
Q Consensus 490 ~~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lg---------------------Lt~~QVkiWFqNrR~ 548 (628)
+...+.||.|+.|++.|+.+||.+|..++||+..+|++||..|| |++.||++||||||+
T Consensus 110 ~~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 110 LPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred cccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhh
Confidence 34466788999999999999999999999999999999999999 999999999999998
Q ss_pred H
Q 006856 549 L 549 (628)
Q Consensus 549 k 549 (628)
+
T Consensus 190 ~ 190 (194)
T 1ic8_A 190 E 190 (194)
T ss_dssp H
T ss_pred h
Confidence 4
No 76
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.36 E-value=1.5e-13 Score=118.86 Aligned_cols=57 Identities=25% Similarity=0.723 Sum_probs=49.3
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCC----CCCCCcccccccchhh
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDT----ESNQGWFCKFCECKME 293 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~----~P~g~W~Cp~C~~k~~ 293 (628)
.+..+|.+|+..+...++.||+|| .|+++||++||+|||.. +|.+.|||+.|.....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD-~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQ-ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECS-SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECC-CCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 356799999987665568999999 59999999999999985 8999999999987654
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.34 E-value=4.6e-13 Score=133.36 Aligned_cols=61 Identities=30% Similarity=0.496 Sum_probs=52.6
Q ss_pred cCCCccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------------------CCcchhhhccchh
Q 006856 488 KLPSNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELS---------------------LEPEKVNKWFKNA 546 (628)
Q Consensus 488 ~~~~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lg---------------------Lt~~QVkiWFqNr 546 (628)
..+..++.||.|+.|++.|+.+|+.+|..++||+..+|++||+.+| ||+.||++|||||
T Consensus 135 ~~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNR 214 (221)
T 2h8r_A 135 SEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 214 (221)
T ss_dssp -------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHH
T ss_pred cccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHh
Confidence 3445567788999999999999999999999999999999999998 8999999999999
Q ss_pred cc
Q 006856 547 RY 548 (628)
Q Consensus 547 R~ 548 (628)
|+
T Consensus 215 R~ 216 (221)
T 2h8r_A 215 RK 216 (221)
T ss_dssp HT
T ss_pred hh
Confidence 98
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.29 E-value=1.1e-12 Score=106.04 Aligned_cols=50 Identities=38% Similarity=1.012 Sum_probs=45.1
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.++.+|.+|+. ++.||+|| .|+++||++||.|||..+|.+.|||+.|..+
T Consensus 7 ~~~~~C~vC~~-----~g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKD-----GGELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCC-----CSSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCC-----CCCEEEcC-CCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 34678999995 57999999 5999999999999999999999999999865
No 79
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=113.66 Aligned_cols=56 Identities=29% Similarity=0.696 Sum_probs=48.9
Q ss_pred CccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 233 SVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 233 ~~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+...++.+|.+|+..+. .+.||+|| .|+++||++||+|||..+|.+.|||+.|...
T Consensus 11 ~~~~~~~~C~vC~~~~~--~~~ll~CD-~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDE--DDKLLFCD-GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGG--GGGCEECT-TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCC--CCCEEEcC-CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45567789999997653 56899999 5999999999999999999999999999754
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=1.7e-12 Score=104.99 Aligned_cols=51 Identities=35% Similarity=0.882 Sum_probs=45.4
Q ss_pred ccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccc
Q 006856 234 VHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCEC 290 (628)
Q Consensus 234 ~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~ 290 (628)
...++.+|.+|+. +++||+|| .|+++||++||+||+..+|.+.|||+.|..
T Consensus 7 ~~~~~~~C~vC~~-----~g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQ-----GGEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSC-----CSSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCC-----CCcEEECC-CCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3455689999996 57999999 599999999999999999999999999974
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.26 E-value=1.4e-12 Score=101.38 Aligned_cols=48 Identities=38% Similarity=0.904 Sum_probs=43.3
Q ss_pred ccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccc
Q 006856 240 ICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCEC 290 (628)
Q Consensus 240 ~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~ 290 (628)
+|.+|+..+ +++.||+|| .|+++||++|++|||..+|.+.|||+.|..
T Consensus 2 ~C~vC~~~~--~~~~ll~Cd-~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG--EDDKLILCD-ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS--CCSCCEECT-TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC--CCCCEEECC-CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 699999765 367999999 599999999999999999999999999974
No 82
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.26 E-value=1e-12 Score=107.16 Aligned_cols=55 Identities=29% Similarity=0.780 Sum_probs=47.4
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCC--C-CCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDT--E-SNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~--~-P~g~W~Cp~C~~k 291 (628)
.++.+|.+|+..+..+++.||+|| .|+++||++||.|||.. + |.+.|||+.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd-~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICD-KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECS-SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECC-CCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456899999987655679999999 59999999999999987 3 7899999999754
No 83
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.26 E-value=1.6e-12 Score=106.66 Aligned_cols=50 Identities=34% Similarity=0.795 Sum_probs=44.8
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.++++|.+|+. +++||+|| .|+++||++||+|||..+|.+.|||+.|...
T Consensus 6 ~~~~~C~vC~~-----~g~ll~CD-~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRD-----GGELICCD-GCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSC-----CSSCEECS-SCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCC-----CCCEEEcC-CCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 35689999995 57899999 5999999999999999999999999999754
No 84
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.25 E-value=2e-12 Score=103.97 Aligned_cols=50 Identities=36% Similarity=0.961 Sum_probs=45.0
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchh
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKM 292 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~ 292 (628)
++.+|.+|+. ++.||+|| .|+++||++|++|||..+|.+.|||+.|....
T Consensus 4 ~~~~C~vC~~-----~g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRK-----SGQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCC-----CSSCEECS-SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCC-----CCcEEEcC-CCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4679999996 57999999 59999999999999999999999999997654
No 85
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.8e-12 Score=106.43 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006856 504 PNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 504 ~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
.+|+..|+.+|..|+||+.+++..||..|||+.++|++||||+|+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 578999999999999999999999999999999999999999998
No 86
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.24 E-value=2.6e-12 Score=105.70 Aligned_cols=49 Identities=27% Similarity=0.636 Sum_probs=43.6
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
....|.+|+. +++||+|| .|+++||++||+|||..+|.+.|||+.|...
T Consensus 11 ~~~~C~vC~~-----~~~ll~Cd-~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGD-----GTDVLRCT-HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSC-----CTTCEECS-SSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCC-----CCeEEECC-CCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4467999985 67899999 5999999999999999999999999999743
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.4e-12 Score=102.24 Aligned_cols=48 Identities=35% Similarity=0.973 Sum_probs=43.7
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCccccccc
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCE 289 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~ 289 (628)
.++.+|.+|+. ++.||+|| .|+++||++||+|||..+|.+.|||+.|.
T Consensus 7 ~~~~~C~vC~~-----~g~ll~Cd-~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRK-----SGQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCC-----SSCCEECS-SSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCC-----CCeEEEcC-CCCcceECccCCCCcCCCCCCceEChhhh
Confidence 35689999996 47899999 59999999999999999999999999996
No 88
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=4.5e-12 Score=107.26 Aligned_cols=55 Identities=36% Similarity=0.850 Sum_probs=47.8
Q ss_pred CCCccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCC-Cccccccc
Q 006856 231 DGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQ-GWFCKFCE 289 (628)
Q Consensus 231 dg~~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g-~W~Cp~C~ 289 (628)
..|.+.+. +|.+|+..+ +++.||+|| .|+++||++||+|||..+|.+ .|||+.|.
T Consensus 20 ~~w~C~~c-~C~vC~~~~--~~~~ll~CD-~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 20 PEKKCHSC-SCRVCGGKH--EPNMQLLCD-ECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SSSCCSSS-SCSSSCCCC--CSTTEEECS-SSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCeECCCC-CCcCcCCcC--CCCCEEEcC-CCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 34666655 899999754 478999999 599999999999999999998 99999996
No 89
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.21 E-value=5.9e-12 Score=104.63 Aligned_cols=56 Identities=32% Similarity=0.820 Sum_probs=48.2
Q ss_pred CCCccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCC-Ccccccccc
Q 006856 231 DGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQ-GWFCKFCEC 290 (628)
Q Consensus 231 dg~~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g-~W~Cp~C~~ 290 (628)
..|...+. +|.+|+..+ +++.||+|| .|+++||++||+|||..+|.+ .|||+.|..
T Consensus 12 ~~w~C~~C-~C~~C~~~~--~~~~ll~CD-~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 12 VNRLCRVC-ACHLCGGRQ--DPDKQLMCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTSCCTTT-SBTTTCCCS--CGGGEEECT-TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCeECCCC-CCcCCCCcC--CCCCEEEcC-CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 44666666 888999755 478999999 599999999999999999998 999999974
No 90
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.20 E-value=3.8e-12 Score=106.13 Aligned_cols=54 Identities=33% Similarity=0.762 Sum_probs=46.7
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchh
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKM 292 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~ 292 (628)
.+..+|.+|+..++.+++.||+|| .|+++||++|++||+ +|.+.|||+.|....
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD-~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCD-MCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 67 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECS-SSCCEEEHHHHTCSS--CCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECC-CCCCccccccCCCCc--CCCCCcCCccCcCcC
Confidence 456899999987656688999999 599999999999985 889999999998653
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.19 E-value=2.9e-12 Score=110.90 Aligned_cols=54 Identities=33% Similarity=0.762 Sum_probs=46.5
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchh
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKM 292 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~ 292 (628)
.++.+|.+|+..++.+++.||+|| .|+.+||++|++||+ +|.+.|||+.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD-~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCD-MCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECS-SSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECC-CCCchhhcccCCCCc--cCCCceECccccCcc
Confidence 456899999987655678999999 599999999999985 789999999998653
No 92
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.16 E-value=9.6e-12 Score=112.08 Aligned_cols=75 Identities=24% Similarity=0.580 Sum_probs=60.5
Q ss_pred hhccCCCCCCCCC-----cccCCCCccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccc
Q 006856 214 LDSLSSVGCIEGS-----VIATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFC 288 (628)
Q Consensus 214 ld~l~~~~~i~~s-----~~~~dg~~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C 288 (628)
+...+|..++... .+....|.+.+..+|.+|+..+ +++.||+|| .|+++||++||+|||..+|.+.|||+.|
T Consensus 29 C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~--~~~~ll~Cd-~C~~~yH~~Cl~ppl~~~P~g~W~C~~C 105 (114)
T 2kwj_A 29 CGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSE--NDDQLLFCD-DCDRGYHMYCLNPPVAEPPEGSWSCHLC 105 (114)
T ss_dssp SCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCT--TTTTEEECS-SSCCEEETTTSSSCCSSCCSSCCCCHHH
T ss_pred CCCccchhhCCChhhhhhccCCCccCccccCccCcccccC--CCCceEEcC-CCCccccccccCCCccCCCCCCeECccc
Confidence 3344556666543 3455678888888999999765 378999999 5999999999999999999999999999
Q ss_pred cch
Q 006856 289 ECK 291 (628)
Q Consensus 289 ~~k 291 (628)
...
T Consensus 106 ~~~ 108 (114)
T 2kwj_A 106 WEL 108 (114)
T ss_dssp HHH
T ss_pred cch
Confidence 754
No 93
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.12 E-value=1.7e-11 Score=120.53 Aligned_cols=50 Identities=30% Similarity=0.736 Sum_probs=44.8
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.++++|.+|+. +|+||+||+ |+++||++||+|||..+|.+.|+|+.|...
T Consensus 5 ~~~~~C~~C~~-----~g~ll~Cd~-C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQN-----GGDLLCCEK-CPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCC-----CEEEEECSS-SSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC-----CCceEEcCC-CCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 34678999995 578999995 999999999999999999999999999854
No 94
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.12 E-value=2.7e-11 Score=102.55 Aligned_cols=56 Identities=32% Similarity=0.825 Sum_probs=47.8
Q ss_pred CCCccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCC-cccccccc
Q 006856 231 DGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQG-WFCKFCEC 290 (628)
Q Consensus 231 dg~~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~-W~Cp~C~~ 290 (628)
..|.+... .|.+|+..+ +++.||+|| .|+++||++||+|||..+|.+. |||+.|..
T Consensus 20 ~~W~C~~C-~C~vC~~~~--d~~~ll~CD-~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 20 VNRLCRVC-ACHLCGGRQ--DPDKQLMCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTSCCTTT-SBTTTCCCS--CGGGEEECT-TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCCC-cCCccCCCC--CCcceeEeC-CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 34666666 899999765 468999999 5999999999999999999988 99999973
No 95
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.12 E-value=1.1e-11 Score=129.81 Aligned_cols=54 Identities=28% Similarity=0.413 Sum_probs=50.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006856 496 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 496 kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
++.+..|+..|+..||+.|..++||+..+|++||++|||+++||+|||||||+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~ 419 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 419 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccc
Confidence 445567899999999999999999999999999999999999999999999984
No 96
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.11 E-value=2.9e-11 Score=120.89 Aligned_cols=55 Identities=33% Similarity=0.848 Sum_probs=43.2
Q ss_pred CCccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCC-Ccccccccc
Q 006856 232 GSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQ-GWFCKFCEC 290 (628)
Q Consensus 232 g~~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g-~W~Cp~C~~ 290 (628)
.|.+.++ .|.+|+..+ +++.||+||+ |+++||++||+|||..+|.+ .|||+.|..
T Consensus 169 ~w~C~~c-~C~vC~~~~--~~~~lL~CD~-C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 169 NRLCRVC-ACHLCGGRQ--DPDKQLMCDE-CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCCTTT-SCSSSCCCC--C--CCEECSS-SCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CEecCCC-CCcCCCCCC--CCCCeEEcCC-CCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3555554 899999755 4789999995 99999999999999999998 999999974
No 97
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.10 E-value=3e-11 Score=116.63 Aligned_cols=49 Identities=29% Similarity=0.767 Sum_probs=44.3
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
++++|.+|+. +|+||+|| .|+++||++||.|||..+|.+.|+|+.|...
T Consensus 3 ~~~~C~~C~~-----~g~ll~Cd-~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQN-----GGELLCCE-KCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCC-----CSSCEECS-SSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCC-----CCeeeecC-CCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 4578999995 67899999 5999999999999999999999999999844
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.09 E-value=4.4e-11 Score=107.40 Aligned_cols=61 Identities=26% Similarity=0.719 Sum_probs=52.9
Q ss_pred ccCCCCccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccc
Q 006856 228 IATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCEC 290 (628)
Q Consensus 228 ~~~dg~~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~ 290 (628)
+....|.+.+..+|.+|+..+. +++.||+|| .|+++||++||+|||..+|.+.|||+.|..
T Consensus 51 ~~~~~W~C~~C~~C~vC~~~~~-~~~~ll~Cd-~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 51 VKALRWQCIECKTCSSCRDQGK-NADNMLFCD-SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp HHTSCCCCTTTCCBTTTCCCCC-TTCCCEECT-TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred hhccccccccCCccccccCcCC-CccceEEcC-CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3466788888889999997532 357899999 599999999999999999999999999974
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.04 E-value=6.3e-11 Score=115.49 Aligned_cols=48 Identities=31% Similarity=0.873 Sum_probs=43.6
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
..+|.+|+. +|+||+||+ |+++||++|+.||+..+|.|.|+|+.|...
T Consensus 2 ~~~C~~C~~-----~g~ll~Cd~-C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQK-----PGDLVMCNQ-CEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCC-----CSSCCCCTT-TCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCC-----CCceeECCC-CCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 468999995 578999995 999999999999999999999999999854
No 100
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.03 E-value=1.2e-10 Score=103.82 Aligned_cols=74 Identities=28% Similarity=0.672 Sum_probs=58.7
Q ss_pred hccCCCCCCCCCc--ccCCCCccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 215 DSLSSVGCIEGSV--IATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 215 d~l~~~~~i~~s~--~~~dg~~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
...+|..++...+ +....|...+..+|.+|+..+. ++.||+|| .|+++||++||+|||..+|.+.|||+.|...
T Consensus 29 ~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~--~~~ll~Cd-~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 29 GQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGE--DSKMLVCD-TCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSC--CTTEEECS-SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred CCCcChHHhCCccccccccCccCCcCCcccccCccCC--CCCeeECC-CCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 3445555654333 2356788888889999997653 56899999 5999999999999999999999999999743
No 101
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.97 E-value=2.1e-10 Score=95.75 Aligned_cols=54 Identities=24% Similarity=0.664 Sum_probs=46.3
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchh
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKM 292 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~ 292 (628)
.+..+|.+|+..+. ++.||+|| .|+.+||+.|+++++...+.+.|||+.|..+.
T Consensus 16 ~~~~~C~~C~~~~~--~~~mi~CD-~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDD--GSPMIGCD-DCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCS--SCCEEECS-SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCC--CCCEEEcC-CCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 45678999998653 56899999 59999999999999988888999999997653
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.84 E-value=1.8e-09 Score=95.02 Aligned_cols=56 Identities=23% Similarity=0.595 Sum_probs=44.8
Q ss_pred CCCccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 231 DGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 231 dg~~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+|....+.+.| +|+..+ +++.||+|| .|+.+||+.|++|++..+|+ .|||+.|...
T Consensus 21 dg~~~~d~vrC-iC~~~~--~~~~mi~Cd-~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~ 76 (98)
T 2lv9_A 21 DGSYGTDVTRC-ICGFTH--DDGYMICCD-KCSVWQHIDCMGIDRQHIPD-TYLCERCQPR 76 (98)
T ss_dssp TCCCCCCBCCC-TTSCCS--CSSCEEEBT-TTCBEEETTTTTCCTTSCCS-SBCCTTTSSS
T ss_pred cCCCCCCCEEe-ECCCcc--CCCcEEEcC-CCCCcCcCcCCCCCccCCCC-CEECCCCcCC
Confidence 34444455678 798755 478999999 59999999999999888874 8999999754
No 103
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.76 E-value=3.4e-09 Score=94.90 Aligned_cols=49 Identities=29% Similarity=0.780 Sum_probs=43.3
Q ss_pred cccccccccccccccCCCCCeeecC--CccCccccccccCCCCCCCCCCCcccccccch
Q 006856 235 HHEHIICAKCKLREAFPDNDIVLCD--GTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lllCD--G~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
..++.+|.+|+. +|+||+|| + |+++||+.||+ |..+|.+.||||.|.+.
T Consensus 12 ~~~~~~C~~C~~-----~G~ll~CD~~~-Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 12 QMHEDYCFQCGD-----GGELVMCDKKD-CPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp CSSCSSCTTTCC-----CSEEEECCSTT-CCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCCCcCCC-----CCcEeEECCCC-CCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 346689999994 68999999 5 99999999998 88999999999999765
No 104
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.61 E-value=3.4e-08 Score=86.09 Aligned_cols=50 Identities=30% Similarity=0.750 Sum_probs=41.0
Q ss_pred cccccccccccccccCCCCCeeecCCc--cC-ccccccccCCCCCCCCCCCcccccccch
Q 006856 235 HHEHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lllCDG~--C~-rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
..+..+| +|+... .+.||+|| . |+ .+||+.|+. |...|.+.|||+.|...
T Consensus 33 ~~e~~yC-iC~~~~---~g~MI~CD-~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBC---CSCCCCCS-CSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCC---CCCEeEec-CCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 3456788 999764 47899999 6 66 799999999 67778899999999754
No 105
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.60 E-value=5.5e-09 Score=97.88 Aligned_cols=49 Identities=29% Similarity=0.767 Sum_probs=43.5
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCC-------CCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDT-------ESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~-------~P~g~W~Cp~C~~k 291 (628)
.+.+|.+|+. +|+||+|| .|+++||..||.|||.. .|.+.|+|+.|..+
T Consensus 62 ~~d~C~vC~~-----GG~LlcCD-~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAE-----GGNLICCD-FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCC-----CSSEEECS-SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCC-----CCcEEeCC-CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4689999995 78999999 69999999999999973 47899999999865
No 106
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.55 E-value=1.9e-08 Score=81.04 Aligned_cols=49 Identities=31% Similarity=0.773 Sum_probs=39.5
Q ss_pred ccccccccccccccCCCCCeeecCCc--cC-ccccccccCCCCCCCCCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~--C~-rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.+..+| +|+... .+.||+|| . |+ .+||+.|++ |..+|.+.|||+.|..+
T Consensus 8 ~e~~~C-~C~~~~---~g~mi~CD-~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 8 NEPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp -CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred CCCCEE-ECCCcC---CCCEEEeC-CCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence 345788 899864 47899999 6 55 799999999 77888899999999753
No 107
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.54 E-value=4.8e-08 Score=87.07 Aligned_cols=53 Identities=28% Similarity=0.611 Sum_probs=44.5
Q ss_pred ccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCccccccc
Q 006856 234 VHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCE 289 (628)
Q Consensus 234 ~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~ 289 (628)
...++++|.+|+..+. .++||+|+ .|+++||+.||+|++..++.+.|+|+.|.
T Consensus 3 ~~~~~~~C~~C~~~g~--~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGD--LLDQFFCT-TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCCSCBTTTCCCCC--TTTSEECS-SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCCcCCCCCCC--CcCCeECC-CCCCCcChHHhCCccccccccCccCCcCC
Confidence 3456789999997542 35679999 59999999999999888888999999996
No 108
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.53 E-value=5.3e-08 Score=81.05 Aligned_cols=49 Identities=31% Similarity=0.773 Sum_probs=40.6
Q ss_pred ccccccccccccccCCCCCeeecCCc--cC-ccccccccCCCCCCCCCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~--C~-rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.+..+| +|+... .+.||+|| . |+ .+||+.|+. |...|.+.|||+.|...
T Consensus 14 ~~~~~C-~C~~~~---~g~MI~CD-~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCS---CSSEECCS-CSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCC---CCCEeEee-CCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 356789 799754 47899999 6 77 699999999 77788899999999754
No 109
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.53 E-value=2.4e-08 Score=80.29 Aligned_cols=48 Identities=33% Similarity=0.789 Sum_probs=40.0
Q ss_pred cccccccccccccCCCCCeeecCCc--cC-ccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~--C~-rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+..+| +|+... .+.||.|| . |+ .+||+.|++ |...|.+.||||.|..+
T Consensus 8 e~~yC-~C~~~~---~g~mi~CD-~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 8 EPTYC-LCHQVS---YGEMIGCD-NPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred CCcEE-ECCCCC---CCCeeEee-CCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 45788 899864 47899999 6 77 699999999 77788899999999743
No 110
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.46 E-value=6e-08 Score=84.39 Aligned_cols=47 Identities=28% Similarity=0.716 Sum_probs=38.9
Q ss_pred ccccccccccccccCCCCCeeecCCccC---ccccccccCCCCCCCCCCCccccc-cc
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCN---CAFHQKCLDPPLDTESNQGWFCKF-CE 289 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~---rayH~~CL~PPL~~~P~g~W~Cp~-C~ 289 (628)
.+..+| +|+... .+.||+|| .|+ .+||+.|++ |...|.+.|||+. |.
T Consensus 24 ~~~~yC-iC~~~~---~g~MI~CD-~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 24 QEEVYC-FCRNVS---YGPMVACD-NPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CCSCCS-TTTCCC---SSSEECCC-SSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred CCCcEE-EeCCCC---CCCEEEec-CCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 455789 899754 36899999 576 899999999 6777889999999 86
No 111
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.44 E-value=5.1e-08 Score=79.13 Aligned_cols=48 Identities=27% Similarity=0.734 Sum_probs=39.3
Q ss_pred cccccccccccccCCCCCeeecCCc--cC-ccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~--C~-rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+..+| +|+... .+.||.|| . |+ .+||+.|+. |...|.+.||||.|...
T Consensus 10 e~~yC-~C~~~~---~g~MI~CD-~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVS---YGEMIGCD-NEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCC---CCCeeeee-CCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 45788 899864 46899999 6 54 999999999 56678899999999753
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.26 E-value=6.6e-08 Score=89.22 Aligned_cols=50 Identities=30% Similarity=0.718 Sum_probs=42.7
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCC-----CC--CCCCcccccccchh
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLD-----TE--SNQGWFCKFCECKM 292 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~-----~~--P~g~W~Cp~C~~k~ 292 (628)
.+.+|.+|+. +|+||+|| .|+++||..|+.|++. .+ |.+.|+|+.|..++
T Consensus 56 ~~~~C~vC~d-----GG~LlcCd-~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 56 MDEQCRWCAE-----GGNLICCD-FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp CBSSCTTTCC-----CSEEEECS-SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCcCeecCC-----CCeeEecC-CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 4578999995 78999999 6999999999999853 33 78999999998764
No 113
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.23 E-value=3.4e-07 Score=74.02 Aligned_cols=54 Identities=26% Similarity=0.485 Sum_probs=42.4
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCC-CCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTES-NQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P-~g~W~Cp~C~~k 291 (628)
.+..+|.+|+.... +++.||.|| .|..+||..|+........ ...|+|+.|..+
T Consensus 4 ~e~~~C~~C~~~~~-~~~~mI~Cd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYA-ADEFWICCD-LCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCC-SSSCEEECS-SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccC-CCCCEEEcc-CCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45678999998653 357899999 6999999999996544332 378999999865
No 114
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=4e-07 Score=75.56 Aligned_cols=51 Identities=25% Similarity=0.627 Sum_probs=40.1
Q ss_pred ccccccccccccccCCCCCeeecCCccC---ccccccccCCCCCCCCCCCcccccccchhh
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCN---CAFHQKCLDPPLDTESNQGWFCKFCECKME 293 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~---rayH~~CL~PPL~~~P~g~W~Cp~C~~k~~ 293 (628)
.+..+|. |+... .+.||.|| .|+ .+||+.|+. |...|.+.|||+.|.....
T Consensus 4 ~~~~yC~-C~~~~---~g~MI~CD-~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 4 GSSGYCI-CNQVS---YGEMVGCD-NQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp SCCCCST-TSCCC---CSSEECCS-CTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHHH
T ss_pred CCCeEEE-cCCCC---CCCEeEeC-CCCCCccCCcccccc--cCcCCCCCEECCCCCcccc
Confidence 3457885 88754 46999999 475 899999999 5667789999999986543
No 115
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.14 E-value=1.3e-06 Score=72.51 Aligned_cols=53 Identities=19% Similarity=0.496 Sum_probs=40.4
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.+..+| +|+.... ++..||.|| .|..+||..|+...........|+|+.|..+
T Consensus 14 ~~~~~C-~C~~~~~-~g~~mI~Cd-~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDD-DGERMLACD-GCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSC-CSSCEEECS-SSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccC-CCCcEEECC-CCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 445789 6998642 234799999 6999999999997644334589999999754
No 116
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.11 E-value=1.4e-06 Score=71.95 Aligned_cols=51 Identities=18% Similarity=0.459 Sum_probs=40.8
Q ss_pred cccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccc
Q 006856 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCEC 290 (628)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~ 290 (628)
..+..+| +|+.... ++.||.|| .|..+||..|++......| +.|+|+.|..
T Consensus 16 ~~~~~~C-iC~~~~~--~~~MIqCd-~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFA--GRPMIECN-ECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCT--TCCEEECT-TTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred CCCceEe-ECCCcCC--CCCEEECC-CCCccccccccCcCcccCC-CcEECCCCCC
Confidence 3456789 9998653 66799999 6999999999997765444 7999999963
No 117
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.05 E-value=6.4e-07 Score=65.80 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=15.9
Q ss_pred chhhhccchhccHHHHhhhh
Q 006856 537 EKVNKWFKNARYLALKARKV 556 (628)
Q Consensus 537 ~QVkiWFqNrR~k~~K~~~~ 556 (628)
+||+|||||||+|.+|....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 59999999999966665543
No 118
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.91 E-value=1.6e-06 Score=77.89 Aligned_cols=50 Identities=24% Similarity=0.521 Sum_probs=39.5
Q ss_pred ccccccccccc-----CCCCCeeecCCccCccccccccCCCCC---CCCCCCccccccc
Q 006856 239 IICAKCKLREA-----FPDNDIVLCDGTCNCAFHQKCLDPPLD---TESNQGWFCKFCE 289 (628)
Q Consensus 239 ~~C~vC~~~~~-----~~~g~lllCDG~C~rayH~~CL~PPL~---~~P~g~W~Cp~C~ 289 (628)
.+|.+|...+. .++++||+|+ .|++.||+.||.+++. .++.+.|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~-~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCA-DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECS-SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeC-CCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 57888876542 2357999999 5999999999998743 3457899999995
No 119
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.90 E-value=1.2e-06 Score=83.44 Aligned_cols=53 Identities=23% Similarity=0.552 Sum_probs=40.8
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCC-CCCCCcccccccchh
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDT-ESNQGWFCKFCECKM 292 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~-~P~g~W~Cp~C~~k~ 292 (628)
+..+| +|+.... +++.||+|| .|+.+||..|++.+... ...+.|+|+.|....
T Consensus 7 ~~~~C-~C~~~~~-~~~~mi~Cd-~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYC-ICKTPED-ESKFYIGCD-RCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CCEET-TTTEECC-TTSCEEECT-TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCcEe-eCCCCCC-CCCCEeECC-CCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 45789 9998653 357899999 59999999999854322 225799999998654
No 120
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.88 E-value=7.2e-06 Score=67.32 Aligned_cols=53 Identities=17% Similarity=0.563 Sum_probs=38.2
Q ss_pred ccccccccccccccCCCCCeeecCC-ccCccccccccCCCCCCC----CCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDG-TCNCAFHQKCLDPPLDTE----SNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG-~C~rayH~~CL~PPL~~~----P~g~W~Cp~C~~k 291 (628)
.+..+| +|+... +.+.||.||+ .|..+||..|++.+-... ....|||+.|...
T Consensus 8 e~~v~C-~C~~~~--~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 8 EAKVRC-ICSSTM--VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp SCEECC-TTCCCS--CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCCEEe-ECCCCc--CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 445778 798754 3689999993 499999999997432211 1357999999743
No 121
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.83 E-value=1.7e-06 Score=72.27 Aligned_cols=51 Identities=20% Similarity=0.596 Sum_probs=38.9
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCC-----CCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTE-----SNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~-----P~g~W~Cp~C~~k 291 (628)
+..+| +|+.... ++.||.|| .|..+||..|+....... +...|+|+.|...
T Consensus 15 ~~~~C-~C~~~~~--~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHN--NRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCC--SSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccC--CCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 34788 8998653 56899999 699999999998543211 2478999999754
No 122
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.82 E-value=6e-06 Score=69.54 Aligned_cols=52 Identities=17% Similarity=0.539 Sum_probs=40.2
Q ss_pred ccccccccccccccCCCCCeeecC--CccCccccccccCCCCCCC-----CCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCD--GTCNCAFHQKCLDPPLDTE-----SNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCD--G~C~rayH~~CL~PPL~~~-----P~g~W~Cp~C~~k 291 (628)
.+..+| +|+..+ +.+.||.|| . |..+||..|+..+-... ....|||+.|...
T Consensus 14 ~~~~~C-iC~~~~--~~g~MI~CD~~~-C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSL--ETDSMIQCEDPR-CHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCC--CCSCEEECSSTT-TCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcC--CCCCEEEECCcc-CCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 356789 799874 368999999 6 99999999998554321 2478999999754
No 123
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.81 E-value=4.6e-06 Score=74.24 Aligned_cols=54 Identities=28% Similarity=0.684 Sum_probs=40.5
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccCCCCC------CCCCCCcccccccchh
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLD------TESNQGWFCKFCECKM 292 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~------~~P~g~W~Cp~C~~k~ 292 (628)
...|.+|+.... +.+.||.||+.|..+||..|++.... ..|...|+||.|....
T Consensus 3 ~~~C~iC~~p~~-~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVN-DDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCC-TTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccC-CCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999998754 35679999723999999999984421 1356899999998653
No 124
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.81 E-value=3.1e-06 Score=69.27 Aligned_cols=51 Identities=27% Similarity=0.625 Sum_probs=39.1
Q ss_pred cccccccccccccCCCCCeeecC-CccCccccccccCCCCC------CCCCCCccccccc
Q 006856 237 EHIICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLDPPLD------TESNQGWFCKFCE 289 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCD-G~C~rayH~~CL~PPL~------~~P~g~W~Cp~C~ 289 (628)
....|.+|+.+.. ++..||.|| + |..+||..|++.... ..|.+.|+|+.|.
T Consensus 7 ~~~~C~~C~~p~~-~~~~mI~CD~~-C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVN-DDQDAILCEAS-CQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCC-TTSCEEEBTTT-TCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccC-CCCCeEecccC-ccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 4568999998754 456899999 6 999999999984321 1356799999995
No 125
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.73 E-value=5.6e-06 Score=69.78 Aligned_cols=52 Identities=19% Similarity=0.468 Sum_probs=39.3
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCC-CCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTES-NQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P-~g~W~Cp~C~~k 291 (628)
+..+| +|+.... +++.||.|| .|..+||..|+........ ...|+|+.|...
T Consensus 11 ~~~~C-~C~~~~d-~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYN-VNHFMIECG-LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCC-SSSCEEEBT-TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccC-CCCceEEcC-CCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 45678 8998653 367999999 6999999999985432221 378999999854
No 126
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.69 E-value=9.5e-06 Score=67.77 Aligned_cols=53 Identities=23% Similarity=0.526 Sum_probs=39.6
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCC-CCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTES-NQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P-~g~W~Cp~C~~k 291 (628)
.+..+| +|+.... +++.||.|| .|..+||..|+.......+ ...|+|+.|...
T Consensus 8 ~~~~yC-iC~~~~~-~~~~MI~Cd-~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYC-VCRLPYD-VTRFMIECD-ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCEET-TTTEECC-TTSCEEECT-TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCeeEE-ECCCcCC-CCCCEEEcC-CCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344677 8987642 357899999 6999999999995544333 368999999754
No 127
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.59 E-value=9.3e-06 Score=63.34 Aligned_cols=48 Identities=29% Similarity=0.650 Sum_probs=35.6
Q ss_pred ccccccccccCCCCCeeecC-CccCccccccccCCCCCCCCCCCccccccc
Q 006856 240 ICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLDPPLDTESNQGWFCKFCE 289 (628)
Q Consensus 240 ~C~vC~~~~~~~~g~lllCD-G~C~rayH~~CL~PPL~~~P~g~W~Cp~C~ 289 (628)
.|.+|+.+.. ++..||.|| + |..+||..|++..........|+|+.|.
T Consensus 4 ~cc~C~~p~~-~~~~mI~Cd~~-C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCK-DKVDWVQCDGG-CDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCC-TTCCEEECTTT-TCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccC-CCCcEEEeCCC-CCccCcccccCCCccccCCCCEECCCCC
Confidence 4678887653 456799999 6 9999999999943222124789999984
No 128
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.58 E-value=1.7e-05 Score=67.94 Aligned_cols=50 Identities=24% Similarity=0.774 Sum_probs=41.5
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCC------------CCCCCCCCcccccccc
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPP------------LDTESNQGWFCKFCEC 290 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PP------------L~~~P~g~W~Cp~C~~ 290 (628)
.+..|.||.... .+.++-|. .|.+.||..||.++ +...+...|.|+.|..
T Consensus 14 ~D~~C~VC~~~t---~~~l~pCR-vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVWT---AESLFPCR-VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCCC---SSCCSSCS-SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCcccccc---ccceeccc-cccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 568999999643 67899999 89999999999886 4444578999999963
No 129
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.55 E-value=2.7e-05 Score=60.67 Aligned_cols=46 Identities=17% Similarity=0.528 Sum_probs=36.6
Q ss_pred cccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCccccccc
Q 006856 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCE 289 (628)
Q Consensus 239 ~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~ 289 (628)
.+| +|+... +++.||.|| .|..+||..|++.+....| ..|+|+.|.
T Consensus 5 ~~C-~C~~~~--~~~~MI~Cd-~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~ 50 (52)
T 3o7a_A 5 VTC-FCMKPF--AGRPMIECN-ECHTWIHLSCAKIRKSNVP-EVFVCQKCR 50 (52)
T ss_dssp BCS-TTCCBC--TTCCEEECT-TTCCEEETTTTTCCGGGCC-SSCCCHHHH
T ss_pred eEE-EeCCcC--CCCCEEEcC-CCCccccccccCCCcccCC-CcEECcCCC
Confidence 456 688754 367999999 6999999999997654333 799999996
No 130
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.46 E-value=1.4e-05 Score=71.57 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=38.6
Q ss_pred cccccccccccc----CCCCCeeecCCccCccccccccCC--CCC-CCCCCCcccccccc
Q 006856 238 HIICAKCKLREA----FPDNDIVLCDGTCNCAFHQKCLDP--PLD-TESNQGWFCKFCEC 290 (628)
Q Consensus 238 ~~~C~vC~~~~~----~~~g~lllCDG~C~rayH~~CL~P--PL~-~~P~g~W~Cp~C~~ 290 (628)
..+|.+|...+. ..+++||.|+ .|++.||.+||++ ++. .++.+.|+|+.|..
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~-~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCA-DCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECT-TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred CccccccCCchhhCcCCCchhceEhh-hcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 457888875421 2357999999 5999999999974 222 34578999999963
No 131
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.02 E-value=9.4e-05 Score=81.62 Aligned_cols=53 Identities=19% Similarity=0.458 Sum_probs=39.1
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCC-CCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTES-NQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P-~g~W~Cp~C~~k 291 (628)
.+..+| +|+.... +++.||.|| .|..+||..|++..-.... .+.|+|+.|...
T Consensus 35 ~~~~yC-~C~~~~d-~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 35 PPPVYC-VCRQPYD-VNRFMIECD-ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCEET-TTTEECC-TTSCEEEBT-TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCeEE-eCCCcCC-CCCCeEEcc-CCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 344677 8987642 367899999 6999999999984432222 267999999754
No 132
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.00 E-value=0.00023 Score=78.88 Aligned_cols=40 Identities=23% Similarity=0.427 Sum_probs=31.1
Q ss_pred CCCCeeecCCccCccccccccCCCCCCCC-CCCcccccccch
Q 006856 251 PDNDIVLCDGTCNCAFHQKCLDPPLDTES-NQGWFCKFCECK 291 (628)
Q Consensus 251 ~~g~lllCDG~C~rayH~~CL~PPL~~~P-~g~W~Cp~C~~k 291 (628)
++..||.|| .|+.+||..|++-.-.... .+.|+||.|...
T Consensus 54 ~~~~mI~CD-~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 54 NDFQWIGCD-SCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp STTSEEECT-TTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred cCCCEEECC-CCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 356899999 5999999999995433322 378999999754
No 133
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.90 E-value=0.0003 Score=68.40 Aligned_cols=52 Identities=17% Similarity=0.440 Sum_probs=37.6
Q ss_pred cccccccccccCC--CCCeeecCCccCccccccccCCCCC------CCC-CCCcccccccch
Q 006856 239 IICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLD------TES-NQGWFCKFCECK 291 (628)
Q Consensus 239 ~~C~vC~~~~~~~--~g~lllCDG~C~rayH~~CL~PPL~------~~P-~g~W~Cp~C~~k 291 (628)
.+|.+|+.....+ +..||.|| .|..+||..|++..-. ..| ...|+|+.|...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECC-CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 4799999876522 13599999 5999999999985321 112 247999999765
No 134
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=96.28 E-value=0.00041 Score=75.76 Aligned_cols=50 Identities=24% Similarity=0.578 Sum_probs=36.9
Q ss_pred cccccccccccCCCCCeeecCCccCccccccccCCCCCCCC-CCCcccccccch
Q 006856 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTES-NQGWFCKFCECK 291 (628)
Q Consensus 239 ~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P-~g~W~Cp~C~~k 291 (628)
.+| +|+.... +++.||.|| .|..+||..|++-.-...+ .+.|+|+.|...
T Consensus 6 ~yC-iC~~~~d-~~~~MIqCD-~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 6 VYC-LCRLPYD-VTRFMIECD-MCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp EET-TTTEECC-TTSCEEECT-TTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred eEE-eCCCcCC-CCCCeEEcC-CCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 455 8887642 368999999 6999999999984322222 268999999754
No 135
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.77 E-value=0.0031 Score=56.13 Aligned_cols=39 Identities=23% Similarity=0.501 Sum_probs=30.2
Q ss_pred CCCeeecCCccCccccccccCCCCCCCC----CCCcccccccch
Q 006856 252 DNDIVLCDGTCNCAFHQKCLDPPLDTES----NQGWFCKFCECK 291 (628)
Q Consensus 252 ~g~lllCDG~C~rayH~~CL~PPL~~~P----~g~W~Cp~C~~k 291 (628)
+..||.|+ .|+.+||..|+.++...++ .+.|+|+.|...
T Consensus 72 ~~~m~~C~-~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECC-ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEET-TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEee-ecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 35689999 7999999999998865443 345999999743
No 136
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=95.29 E-value=0.011 Score=52.83 Aligned_cols=64 Identities=16% Similarity=0.313 Sum_probs=44.7
Q ss_pred hhccCCCCCCCCCcccCCCCccccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCccc
Q 006856 214 LDSLSSVGCIEGSVIATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFC 285 (628)
Q Consensus 214 ld~l~~~~~i~~s~~~~dg~~~~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~C 285 (628)
++...|..++.-..++...|.+..+ .|.+|+.. ..+.|. .|+.+||..|+++.|...+...|+|
T Consensus 35 Cp~~fH~~Cl~L~~~P~g~W~Cp~c-~C~~C~k~------~~~~C~-~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 35 CPKAYHLLCLNLTQPPYGKWECPWH-QCDECSSA------AVSFCE-FCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp CCCEECTGGGTCSSCCSSCCCCGGG-BCTTTCSB------CCEECS-SSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCcccccccCcCCcCCCCCEECCCC-CCCcCCCC------CCcCcC-CCCcchhhhccCCcceecCCCCcee
Confidence 3444555555433334444555443 36677753 238899 7999999999999999999999998
No 137
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=93.05 E-value=0.019 Score=50.97 Aligned_cols=37 Identities=19% Similarity=0.499 Sum_probs=28.0
Q ss_pred CeeecCCccCccccccccCCCC------CCCC-CCCcccccccch
Q 006856 254 DIVLCDGTCNCAFHQKCLDPPL------DTES-NQGWFCKFCECK 291 (628)
Q Consensus 254 ~lllCDG~C~rayH~~CL~PPL------~~~P-~g~W~Cp~C~~k 291 (628)
.||.|| .|..|||..|..-.- ...| ...|.||.|...
T Consensus 1 ~mi~c~-~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCG-KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCCS-CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred Cccccc-cCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 389999 699999999987432 2334 457999999744
No 138
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.05 E-value=0.064 Score=44.48 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchh
Q 006856 502 MPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNA 546 (628)
Q Consensus 502 ft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNr 546 (628)
.++.-.+.|+++|..+..+....-..|..+.+|+..||+-||--|
T Consensus 13 ~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 355556799999999999999999999999999999999999654
No 139
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=85.79 E-value=0.55 Score=45.35 Aligned_cols=46 Identities=11% Similarity=0.219 Sum_probs=31.1
Q ss_pred cccccccCCCCCeeecCCccCccccccccCCCCCCCCC----CCcccccccc
Q 006856 243 KCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESN----QGWFCKFCEC 290 (628)
Q Consensus 243 vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~----g~W~Cp~C~~ 290 (628)
-|+.... ..-.+|.|+ .|.++||..|+..+....-. -...|..|..
T Consensus 9 YCG~~~~-~~~~mLqC~-~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 9 DEENGRQ-LGEVELQCG-ICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp --CTTCC-TTSCEEECT-TTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred EcCCCCC-CCceeEeec-cccceecHHHhcccccCccccceeEEEEccccCC
Confidence 4665433 456899999 69999999999865433322 2456999965
No 140
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=85.76 E-value=0.15 Score=48.51 Aligned_cols=49 Identities=22% Similarity=0.663 Sum_probs=38.8
Q ss_pred ccccccccccccCCCCCeeecCC-ccCccccccccCCCCCC------CCCCCcccccccch
Q 006856 238 HIICAKCKLREAFPDNDIVLCDG-TCNCAFHQKCLDPPLDT------ESNQGWFCKFCECK 291 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG-~C~rayH~~CL~PPL~~------~P~g~W~Cp~C~~k 291 (628)
+.+|.+|+. ++.||+||. .|.++|=..|+.--+.. .....|.|-.|...
T Consensus 79 ~~yC~wC~~-----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 79 QSYCTICCG-----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp BSSCTTTSC-----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred cceeeEecC-----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 579999995 789999993 49999999998644433 22688999999855
No 141
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=83.37 E-value=0.24 Score=53.20 Aligned_cols=51 Identities=18% Similarity=0.611 Sum_probs=39.3
Q ss_pred cccccccccccccCCCCCeeecCC-ccCccccccccCCCCCCCC------CCCcccccccchh
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDG-TCNCAFHQKCLDPPLDTES------NQGWFCKFCECKM 292 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG-~C~rayH~~CL~PPL~~~P------~g~W~Cp~C~~k~ 292 (628)
.+.+|..|+. ++.+++||. .|.++|-..|+.--+...- ...|.|-.|...+
T Consensus 92 ~~~yCr~C~~-----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 92 YQSYCSICCS-----GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SBCSCTTTCC-----CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CcccceEcCC-----CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 3579999995 789999993 4999999999974442221 5889999998653
No 142
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=80.90 E-value=0.33 Score=40.89 Aligned_cols=49 Identities=22% Similarity=0.532 Sum_probs=33.4
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.+...|.+|...-. .+..+..- .|...||..|+...+... -.||.|...
T Consensus 38 ~~~~~C~IC~~~~~--~~~~~~~l-~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~ 86 (91)
T 2l0b_A 38 GQEMCCPICCSEYV--KGDVATEL-PCHHYFHKPCVSIWLQKS----GTCPVCRCM 86 (91)
T ss_dssp SSCSEETTTTEECC--TTCEEEEE-TTTEEEEHHHHHHHHTTT----CBCTTTCCB
T ss_pred CCCCCCcccChhhc--CCCcEEec-CCCChHHHHHHHHHHHcC----CcCcCcCcc
Confidence 34568999986432 23333334 499999999998766543 389999754
No 143
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=80.55 E-value=1.9 Score=37.85 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006856 498 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 498 ~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
+|.+||.++...+-..+.+++++. ..+||+.+|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 456799999988888876776654 346999999999999999988776
No 144
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.25 E-value=0.2 Score=42.00 Aligned_cols=51 Identities=22% Similarity=0.614 Sum_probs=33.5
Q ss_pred ccccccccccccccCCCCCeee-cCCcc---CccccccccCCCCCCCCCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVL-CDGTC---NCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lll-CDG~C---~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.+...|.+|..... .++.+++ |. | -..||..||...|... +...||.|...
T Consensus 13 ~~~~~C~IC~~~~~-~~~~l~~pC~--C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~~ 67 (80)
T 2d8s_A 13 SSQDICRICHCEGD-DESPLITPCH--CTGSLHFVHQACLQQWIKSS--DTRCCELCKYE 67 (80)
T ss_dssp TTSCCCSSSCCCCC-SSSCEECSSS--CCSSSCCEETTHHHHHHHHH--CCSBCSSSCCB
T ss_pred CCCCCCeEcCcccc-CCCeeEeccc--cCCcCCeeCHHHHHHHHhhC--CCCCCCCCCCe
Confidence 34568999986433 2345543 32 4 3899999999766432 34689999855
No 145
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=78.41 E-value=2.5 Score=35.17 Aligned_cols=45 Identities=16% Similarity=0.371 Sum_probs=33.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccch
Q 006856 496 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKN 545 (628)
Q Consensus 496 kR~r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqN 545 (628)
++.+.+|+.++....-..+. ..+ ...+||+++|++...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 44566789998766555664 333 3568999999999999999754
No 146
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=78.00 E-value=1.7 Score=33.59 Aligned_cols=47 Identities=6% Similarity=0.266 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006856 500 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 547 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR 547 (628)
.+||++....+...+.. .++......++|+++|+++.+|..|....+
T Consensus 4 ~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46899988777555543 333222367999999999999999976443
No 147
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=77.81 E-value=0.96 Score=48.16 Aligned_cols=56 Identities=27% Similarity=0.556 Sum_probs=35.5
Q ss_pred ccccccccccccccCCCCCe--eecCC-ccCccccccccCCCCCCCCCC-------Ccccccccchh
Q 006856 236 HEHIICAKCKLREAFPDNDI--VLCDG-TCNCAFHQKCLDPPLDTESNQ-------GWFCKFCECKM 292 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~l--llCDG-~C~rayH~~CL~PPL~~~P~g-------~W~Cp~C~~k~ 292 (628)
.....|.+|-.... +++.+ ..|+. .|...||..||...+...+.. -=-||.|..+.
T Consensus 306 e~~~ECaICys~~l-~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 306 NEELRCNICFAYRL-DGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CSCCSCSSSCCSSC-TTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cCCccCcccceeec-CCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 34567999996543 22333 46874 699999999998644332210 12399998653
No 148
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.82 E-value=0.8 Score=37.78 Aligned_cols=27 Identities=26% Similarity=0.722 Sum_probs=22.0
Q ss_pred ccCccccccccCCCCCCCCCCCcccccccch
Q 006856 261 TCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 261 ~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.|...||..|+...|.... .||.|...
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 73 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQNN----RCPLCQQD 73 (81)
T ss_dssp TTSCEEEHHHHHHHTTTCC----BCTTTCCB
T ss_pred CCCCccChHHHHHHHHhCC----CCCCcCCC
Confidence 3999999999998776542 89999855
No 149
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=74.70 E-value=1.3 Score=33.13 Aligned_cols=48 Identities=23% Similarity=0.519 Sum_probs=32.8
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
...|.+|...-. .+...+..- .|...||..|+...+.. ...||.|...
T Consensus 5 ~~~C~IC~~~~~-~~~~~~~~~-~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELE-DGEEARFLP-RCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCC-TTSCCEECS-SSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CCcCccCCcccc-CCCceEECC-CCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 457999986433 223344444 39999999999877654 3579999754
No 150
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=74.08 E-value=3.3 Score=29.10 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 547 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR 547 (628)
.+++.+...+...+.. .+ ...+||+.||++...|..|....+
T Consensus 5 ~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 4688887666666643 33 366899999999999999986543
No 151
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=70.27 E-value=1.1 Score=39.46 Aligned_cols=37 Identities=22% Similarity=0.466 Sum_probs=29.0
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
..+|.+|+.. -|+ .|...||++|+.+| .|.|..|...
T Consensus 7 C~~C~~C~~~---------~C~-~C~~c~~~~~~~~~-------~~~~~~c~~~ 43 (117)
T 4bbq_A 7 CRKCKACVQG---------ECG-VCHYCRDMKKFGGP-------GRMKQSCVLR 43 (117)
T ss_dssp CSCSHHHHSC---------CCS-CSHHHHHSGGGTSC-------CCSCCCCGGG
T ss_pred CCcCcCcCCc---------CCC-CCCCCcCCcccCCC-------Cccccchhhe
Confidence 4678889863 198 79999999999876 4888888644
No 152
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=68.10 E-value=0.78 Score=36.05 Aligned_cols=49 Identities=27% Similarity=0.408 Sum_probs=32.3
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.....|.+|...-. .+..+..- .|...||..|+...+... ..||.|...
T Consensus 12 ~~~~~C~IC~~~~~--~~~~~~~~-~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~ 60 (69)
T 2kiz_A 12 DTEEKCTICLSILE--EGEDVRRL-PCMHLFHQVCVDQWLITN----KKCPICRVD 60 (69)
T ss_dssp TCCCSBTTTTBCCC--SSSCEEEC-TTSCEEEHHHHHHHHHHC----SBCTTTCSB
T ss_pred CCCCCCeeCCcccc--CCCcEEEe-CCCCHHHHHHHHHHHHcC----CCCcCcCcc
Confidence 34567999986432 22333444 499999999998655432 369999755
No 153
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=67.63 E-value=5.6 Score=33.81 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=14.6
Q ss_pred cCCCCCCCCCCCcccccccchhh
Q 006856 271 LDPPLDTESNQGWFCKFCECKME 293 (628)
Q Consensus 271 L~PPL~~~P~g~W~Cp~C~~k~~ 293 (628)
-..++...| .+|.||.|-....
T Consensus 50 pGT~fedlP-ddW~CPvCga~K~ 71 (81)
T 2kn9_A 50 AGTRWDDIP-DDWSCPDCGAAKS 71 (81)
T ss_dssp TTCCTTTSC-TTCCCTTTCCCGG
T ss_pred CCCChhHCC-CCCcCCCCCCCHH
Confidence 334445554 6899999987644
No 154
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.34 E-value=0.57 Score=37.63 Aligned_cols=49 Identities=27% Similarity=0.617 Sum_probs=33.6
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.+...|.+|...-. .+..+..- .|...||..|+...+... ..||.|...
T Consensus 21 ~~~~~C~IC~~~~~--~~~~~~~l-~C~H~fh~~Ci~~w~~~~----~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDFE--SRQLLRVL-PCNHEFHAKCVDKWLKAN----RTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEECC--BTCEEEEE-TTTEEEETTHHHHHHHHC----SSCTTTCCC
T ss_pred CCCCCCeECCcccC--CCCeEEEE-CCCCHhHHHHHHHHHHcC----CcCcCcCCc
Confidence 34568999996432 33444444 499999999998765432 479999754
No 155
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=66.09 E-value=0.48 Score=37.57 Aligned_cols=49 Identities=20% Similarity=0.536 Sum_probs=32.3
Q ss_pred cccccccccccccCCCCCeeecCCccCc---cccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNC---AFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~r---ayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+...|.+|..... +.-+.-|. |.. .||..||...+.. .+.+.|+.|...
T Consensus 5 ~~~~CrIC~~~~~--~~l~~PC~--C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~ 56 (60)
T 1vyx_A 5 DVPVCWICNEELG--NERFRACG--CTGELENVHRSCLSTWLTI--SRNTACQICGVV 56 (60)
T ss_dssp SCCEETTTTEECS--CCCCCSCC--CSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCB
T ss_pred CCCEeEEeecCCC--CceecCcC--CCCchhhhHHHHHHHHHHh--CCCCccCCCCCe
Confidence 3467999986432 22334443 655 9999999977643 246899999754
No 156
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=65.85 E-value=0.96 Score=33.74 Aligned_cols=48 Identities=17% Similarity=0.405 Sum_probs=32.2
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
...|.+|...-. .++..+..- .|...||..|+...+... ..||.|...
T Consensus 5 ~~~C~IC~~~~~-~~~~~~~~~-~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 5 SSGCPICLEDIH-TSRVVAHVL-PCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCSCTTTCCCCC-TTTSCEEEC-TTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCcCcccChhhc-CCCcCeEec-CCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 467999986432 223344555 499999999997654332 579999754
No 157
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=65.83 E-value=3.5 Score=29.56 Aligned_cols=43 Identities=7% Similarity=0.254 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
.|++++...+...+... ....+||+.||++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 35777776666666543 24578999999999999999976554
No 158
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=64.62 E-value=2.7 Score=33.65 Aligned_cols=48 Identities=29% Similarity=0.505 Sum_probs=32.0
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
....|.+|...-. ....+.-- .|...||..|+...+... ..||.|...
T Consensus 14 ~~~~C~IC~~~~~--~~~~~~~~-~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~ 61 (78)
T 2ect_A 14 SGLECPVCKEDYA--LGESVRQL-PCNHLFHDSCIVPWLEQH----DSCPVCRKS 61 (78)
T ss_dssp SSCCCTTTTSCCC--TTSCEEEC-TTSCEEETTTTHHHHTTT----CSCTTTCCC
T ss_pred CCCCCeeCCcccc--CCCCEEEe-CCCCeecHHHHHHHHHcC----CcCcCcCCc
Confidence 4568999986432 22233223 388999999998665432 589999855
No 159
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.22 E-value=0.88 Score=36.24 Aligned_cols=48 Identities=33% Similarity=0.746 Sum_probs=32.4
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+...|.+|...-. .+..++... |...||..|+...+... ..||.|...
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~~~~--C~H~f~~~Ci~~~~~~~----~~CP~Cr~~ 61 (74)
T 2ep4_A 14 LHELCAVCLEDFK-PRDELGICP--CKHAFHRKCLIKWLEVR----KVCPLCNMP 61 (74)
T ss_dssp CSCBCSSSCCBCC-SSSCEEEET--TTEEEEHHHHHHHHHHC----SBCTTTCCB
T ss_pred CCCCCcCCCcccC-CCCcEEEcC--CCCEecHHHHHHHHHcC----CcCCCcCcc
Confidence 3568999997532 233444443 99999999998655432 379999855
No 160
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=60.74 E-value=6.3 Score=32.71 Aligned_cols=48 Identities=6% Similarity=0.120 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 553 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~ 553 (628)
.+++.|.+.|.-+|-+. ..-.+||+.||++...|+.+....|.+.++.
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47899999888766433 2457899999999999999998888855443
No 161
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=60.59 E-value=1.9 Score=38.72 Aligned_cols=27 Identities=33% Similarity=0.626 Sum_probs=0.0
Q ss_pred ccCccccccccCCCCCCCCCCCcccccccch
Q 006856 261 TCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 261 ~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.|...||..|+.+.|... -.||.|...
T Consensus 83 ~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~ 109 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKTR----QVCPLDNRE 109 (117)
T ss_dssp -------------------------------
T ss_pred CcCceEcHHHHHHHHHcC----CcCCCCCCe
Confidence 499999999999877653 369999765
No 162
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=58.03 E-value=9.1 Score=31.88 Aligned_cols=45 Identities=4% Similarity=0.191 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006856 500 HRMPPNAVEKLRQVFAEN-ELPSRIVKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~~-~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
.+||+++....-..+... .+ ...+||+.+|+++.+|..|....+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 468999877655555332 22 4679999999999999999865443
No 163
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=57.71 E-value=5 Score=30.92 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 550 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~ 550 (628)
.+++.+...|...|-.. ..-.++|+.||+++..|+.|....|.+.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 47899999998876433 2357899999999999999988877743
No 164
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.38 E-value=2.8 Score=34.71 Aligned_cols=46 Identities=22% Similarity=0.472 Sum_probs=33.7
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccc
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCEC 290 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~ 290 (628)
...|.+|...-. . -+.|- .|...||..|+.-.|.... .=.||.|..
T Consensus 15 i~~C~IC~~~i~--~--g~~C~-~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~ 60 (74)
T 2ct0_A 15 VKICNICHSLLI--Q--GQSCE-TCGIRMHLPCVAKYFQSNA--EPRCPHCND 60 (74)
T ss_dssp SCBCSSSCCBCS--S--SEECS-SSCCEECHHHHHHHSTTCS--SCCCTTTCS
T ss_pred CCcCcchhhHcc--c--CCccC-CCCchhhHHHHHHHHHhcC--CCCCCCCcC
Confidence 467999997543 2 25787 6999999999987775542 236999973
No 165
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=55.40 E-value=12 Score=31.74 Aligned_cols=46 Identities=15% Similarity=0.403 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHH-HhC-CCCCH-HHHHHHHHHhCCCcchhhhccch
Q 006856 500 HRMPPNAVEKLRQVF-AEN-ELPSR-IVKENLSKELSLEPEKVNKWFKN 545 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F-~~~-~yPs~-~~r~~LA~~lgLt~~QVkiWFqN 545 (628)
.+||+++....-..+ ... .|++. ....++|..+|+++.+|..|..-
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 468999876544444 332 35553 46788999999999999999754
No 166
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=55.35 E-value=2.1 Score=37.16 Aligned_cols=49 Identities=18% Similarity=0.536 Sum_probs=34.3
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchhh
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKME 293 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~~ 293 (628)
.+...|.+|...- .+.+++ .|...||..|+...+.. +...||.|.....
T Consensus 13 ~~~~~C~iC~~~~---~~p~~~---~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEIL---VEPVTL---PCNHTLCKPCFQSTVEK---ASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBC---SSCEEC---TTSCEECHHHHCCCCCT---TTSBCTTTCCBCH
T ss_pred CCCCCCccCCccc---CceeEc---CCCCHHhHHHHHHHHhH---CcCCCCCCCcccC
Confidence 4457899999643 233433 38899999999866542 4578999987654
No 167
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=54.55 E-value=12 Score=32.11 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006856 499 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 499 r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...||+.+.+.|.-++..-. -.+||+.||+++..|+.+..+-+.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45689999999987664333 389999999999999998887666
No 168
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=54.44 E-value=2.5 Score=37.14 Aligned_cols=27 Identities=33% Similarity=0.626 Sum_probs=21.7
Q ss_pred ccCccccccccCCCCCCCCCCCcccccccch
Q 006856 261 TCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 261 ~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
.|...||..|+.+.|... -.||.|...
T Consensus 72 ~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~~ 98 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLKTR----QVCPLDNRE 98 (106)
T ss_dssp TTSCEEEHHHHHHHHTTC----SBCSSSCSB
T ss_pred ccCcEECHHHHHHHHHcC----CcCcCCCCc
Confidence 499999999999876542 479999854
No 169
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=53.09 E-value=8.4 Score=32.41 Aligned_cols=45 Identities=7% Similarity=0.050 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006856 499 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 499 r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
...+|+.+.+.|.-+|..-.| .+||+.||+++..|+.+..+-|.+
T Consensus 25 l~~Lt~~e~~vl~l~~~g~s~------~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 25 LSGLTDQERTLLGLLSEGLTN------KQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp --CCCHHHHHHHHHHHTTCCH------HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHcCCCH------HHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345899999999986443333 789999999999999988877763
No 170
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=52.75 E-value=2.2 Score=36.82 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=22.0
Q ss_pred ccCccccccccCCCCCCCC-CCCcccccccch
Q 006856 261 TCNCAFHQKCLDPPLDTES-NQGWFCKFCECK 291 (628)
Q Consensus 261 ~C~rayH~~CL~PPL~~~P-~g~W~Cp~C~~k 291 (628)
.|...||..|+...+.... ...-.||.|...
T Consensus 60 ~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~ 91 (114)
T 1v87_A 60 KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91 (114)
T ss_dssp SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCB
T ss_pred CCCCcccHHHHHHHHHcccCCCCCcCCCCCCc
Confidence 4999999999987653211 234579999844
No 171
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=51.02 E-value=12 Score=32.74 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 554 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~~ 554 (628)
.+++.+...|. .|- ..| .-.+||+.||+++..|+.+....|.+.++.-
T Consensus 109 ~L~~~~r~v~~-~~~-~g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-RGY----SYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHT-TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 46888888888 333 222 4578999999999999999988887555443
No 172
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.71 E-value=9.3 Score=30.05 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=32.6
Q ss_pred ccccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchhh
Q 006856 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKME 293 (628)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~~ 293 (628)
.+...|.+|...- .+ .+... |...||..|+...+... ..||.|.....
T Consensus 13 ~~~~~C~IC~~~~---~~-~~~~~--CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTC---VH-PVSLP--CKHVFCYLCVKGASWLG----KRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBC---SS-EEEET--TTEEEEHHHHHHCTTCS----SBCSSSCCBCC
T ss_pred CCCCCCccCCccc---CC-CEEcc--CCCHHHHHHHHHHHHCC----CcCcCcCchhC
Confidence 3456899998643 22 23333 88899999998655432 68999986643
No 173
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=48.38 E-value=7.5 Score=30.24 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006856 499 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 499 r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
...+++.+.+.|..++ ..+ .-.+||+.||+++..|..++.+-+.+
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3458999999998743 333 44689999999999999998877664
No 174
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=47.21 E-value=13 Score=27.57 Aligned_cols=39 Identities=10% Similarity=0.258 Sum_probs=28.9
Q ss_pred CC--HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccch
Q 006856 502 MP--PNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKN 545 (628)
Q Consensus 502 ft--~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqN 545 (628)
++ +++...+...|. ..+ ...+||+.||++...|..|+..
T Consensus 14 l~~~~~~~~~i~~l~~-~g~----s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 14 VESEDDLVSVAHELAK-MGY----TVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp ECSHHHHHHHHHHHHH-TTC----CHHHHHHHHTSCHHHHHHHHTC
T ss_pred HhcCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHh
Confidence 45 666666666654 333 4668999999999999999853
No 175
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=46.10 E-value=6.8 Score=33.33 Aligned_cols=30 Identities=30% Similarity=0.757 Sum_probs=23.2
Q ss_pred cccccccccccCCCCCeeecC-CccCcccccccc
Q 006856 239 IICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCL 271 (628)
Q Consensus 239 ~~C~vC~~~~~~~~g~lllCD-G~C~rayH~~CL 271 (628)
..|.+|+... .|-.|.|. +.|..+||..|-
T Consensus 18 l~C~iC~~~~---~GAciqC~~~~C~~~fHv~CA 48 (87)
T 2lq6_A 18 LTCYLCKQKG---VGASIQCHKANCYTAFHVTCA 48 (87)
T ss_dssp CCBTTTTBCC---SSCEEECSCTTTCCEEEHHHH
T ss_pred CCCcCCCCCC---CcEeEecCCCCCCCcCcHHHH
Confidence 5799998532 36788887 259999999985
No 176
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.44 E-value=8 Score=30.17 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
.+++.+.+.|...|.-+.+-. ..-.+||+.||+++..|+.+....+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRK 52 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHG
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 478999999998884322222 233679999999999999987776663
No 177
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=44.88 E-value=15 Score=33.32 Aligned_cols=49 Identities=10% Similarity=0.216 Sum_probs=37.5
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHH----Hh--CCCcchhhhccchhc
Q 006856 496 RRSFHRMPPNAVEKLRQVF-AENELPSRIVKENLSK----EL--SLEPEKVNKWFKNAR 547 (628)
Q Consensus 496 kR~r~rft~~Q~~~Le~~F-~~~~yPs~~~r~~LA~----~l--gLt~~QVkiWFqNrR 547 (628)
+++|.++|.+|..+|-.++ ..++-.+ +.+||+ +. |++..+|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~---q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG---QQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC---HHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 4566788999999999998 6676654 445677 77 778888999997743
No 178
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=44.39 E-value=5.9 Score=31.43 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006856 502 MPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 550 (628)
Q Consensus 502 ft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~ 550 (628)
+++.+.+.|.-+| ..+ .-.++|+.||+++..|+.++.+-+.+.
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 6888888888743 233 335899999999999999888777643
No 179
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=43.78 E-value=15 Score=32.25 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
.+++.|.+.|.-+|.+. -.-.++|+.||+++..|+.|....|.+.++
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47899999988876543 234789999999999999999998875443
No 180
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=43.51 E-value=8.9 Score=28.68 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006856 525 KENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 525 r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
..+||+.+|++...|..|..+++.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~~ 40 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKYN 40 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999998764
No 181
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=42.78 E-value=9.2 Score=28.77 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+||+.+|++...|..|..+++.
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 20 RQAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCCC
Confidence 3678999999999999999998765
No 182
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=42.59 E-value=16 Score=28.77 Aligned_cols=51 Identities=8% Similarity=-0.009 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006856 500 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 551 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~ 551 (628)
..+++.+.+.|...|.-... ....-.+||+.||+++..|+.|....+.+.+
T Consensus 9 ~~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35799999999988852100 0123368999999999999999887777443
No 183
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=41.97 E-value=9.4 Score=30.41 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=22.5
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+||+.||++...|..|..+++.
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCC
Confidence 4689999999999999999998774
No 184
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=41.17 E-value=10 Score=28.91 Aligned_cols=25 Identities=4% Similarity=0.086 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+||+.+|++...|..|..+++.
T Consensus 18 sq~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 18 TQTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3678999999999999999988765
No 185
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.86 E-value=8.5 Score=31.49 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006856 499 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 499 r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
...+|+.+.+.|.-++. . ..-.+||+.||+++..|+.+..+-+.+
T Consensus 19 ~~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GGGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34589999999988532 2 355789999999999999988877764
No 186
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=39.68 E-value=2 Score=33.54 Aligned_cols=50 Identities=20% Similarity=0.468 Sum_probs=32.3
Q ss_pred cccccccccccccCC--CCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~--~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+...|.+|...-... ++..+..- .|...||..|+...+... -.||.|...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 60 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA----NTCPTCRKK 60 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHC----SBCTTTCCB
T ss_pred CCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcC----CCCCCCCCc
Confidence 456799998643211 23344444 499999999997654322 379999855
No 187
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=39.65 E-value=11 Score=29.14 Aligned_cols=25 Identities=12% Similarity=0.389 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+||+.+|++...|..|..+++.
T Consensus 25 s~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 25 TNRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3578999999999999999998764
No 188
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=39.06 E-value=10 Score=31.18 Aligned_cols=50 Identities=16% Similarity=0.428 Sum_probs=30.9
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+...|.+|...-...+-.++-|. |...|+..|+.--+. .+...||.|...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~--CGH~fC~~Cl~~~~~---~~~~~CP~CR~~ 59 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCT--CGYQICRFCWHRIRT---DENGLCPACRKP 59 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSST--TSCCCCHHHHHHHTT---SSCSBCTTTCCB
T ss_pred cCCcCCccCccCccccccccccC--CCCCcCHHHHHHHHh---cCCCCCCCCCCc
Confidence 34679999974432222333343 777788888764332 245789999865
No 189
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=38.42 E-value=12 Score=30.92 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006856 499 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 499 r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
...+|+.+.+.|.-+|.. |. -.+||+.||+++..|+.+..+-|.+
T Consensus 27 l~~Lt~~e~~vl~l~~~g--~s----~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKG--YS----NQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp GGGCCSHHHHHHHHHHTT--CC----TTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHcC--CC----HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345899999999875433 32 2479999999999999988877764
No 190
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=37.92 E-value=25 Score=27.69 Aligned_cols=41 Identities=12% Similarity=0.247 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
.|+.+.+..|..... -+..+||+.+|++...|..|-.+++.
T Consensus 10 ~~~g~~lr~~R~~~g-------ltq~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLS-------LTQKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCHHHHHHHHHHTT-------CCHHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHcC-------CCHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 478888888876553 24688999999999999999998775
No 191
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=37.67 E-value=8.8 Score=38.28 Aligned_cols=46 Identities=22% Similarity=0.462 Sum_probs=33.0
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccc
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCEC 290 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~ 290 (628)
...|.+|..--. . =+.|. .|...||..|+.-.+... +.=.||.|..
T Consensus 180 i~~C~iC~~iv~--~--g~~C~-~C~~~~H~~C~~~~~~~~--~~~~CP~C~~ 225 (238)
T 3nw0_A 180 VKICNICHSLLI--Q--GQSCE-TCGIRMHLPCVAKYFQSN--AEPRCPHCND 225 (238)
T ss_dssp CCBCTTTCSBCS--S--CEECS-SSCCEECHHHHHHHTTTC--SSCBCTTTCC
T ss_pred CCcCcchhhHHh--C--CcccC-ccChHHHHHHHHHHHHhC--CCCCCCCCCC
Confidence 467999997543 2 27898 699999999997544332 3347999963
No 192
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=37.62 E-value=6.7 Score=35.22 Aligned_cols=44 Identities=18% Similarity=0.459 Sum_probs=29.7
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+..|.+|...-. +.+... |...||..|+...+.. .-.||.|...
T Consensus 53 ~~~C~iC~~~~~----~~~~~~--CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 96 (138)
T 4ayc_A 53 ELQCIICSEYFI----EAVTLN--CAHSFCSYCINEWMKR----KIECPICRKD 96 (138)
T ss_dssp HSBCTTTCSBCS----SEEEET--TSCEEEHHHHHHHTTT----CSBCTTTCCB
T ss_pred cCCCcccCcccC----CceECC--CCCCccHHHHHHHHHc----CCcCCCCCCc
Confidence 346999996432 233333 8889999998765543 2469999765
No 193
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=37.44 E-value=3.8 Score=34.86 Aligned_cols=48 Identities=23% Similarity=0.465 Sum_probs=34.1
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchh
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKM 292 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~ 292 (628)
+...|.+|...- .+-+.|- .|...||..|+...+... ...||.|....
T Consensus 21 ~~~~C~IC~~~~----~~p~~~~-~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKL----RDARLCP-HCSKLCCFSCIRRWLTEQ---RAQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBC----SSEEECT-TTCCEEEHHHHHHHHHHT---CSBCTTTCCBC
T ss_pred CCCCCccCCccc----cCccccC-CCCChhhHHHHHHHHHHC---cCCCCCCCCcC
Confidence 346799999643 2456666 599999999997654432 15899998664
No 194
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.29 E-value=21 Score=30.58 Aligned_cols=33 Identities=30% Similarity=0.801 Sum_probs=26.3
Q ss_pred CCeeecCCccC-ccccccccCCCCCCCCCCCccccccc
Q 006856 253 NDIVLCDGTCN-CAFHQKCLDPPLDTESNQGWFCKFCE 289 (628)
Q Consensus 253 g~lllCDG~C~-rayH~~CL~PPL~~~P~g~W~Cp~C~ 289 (628)
=.||+|. .|. .+-|..|.. |. .....|.|..|.
T Consensus 44 W~L~lC~-~Cgs~gtH~~Cs~--l~-~~~~~weC~~C~ 77 (85)
T 1weq_A 44 WRLILCA-TCGSHGTHRDCSS--LR-PNSKKWECNECL 77 (85)
T ss_dssp TBCEECS-SSCCCEECSGGGT--CC-TTCSCCCCTTTS
T ss_pred EEEEeCc-ccCCchhHHHHhC--Cc-CCCCCEECCcCc
Confidence 5799999 798 569999998 32 245789999997
No 195
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.87 E-value=13 Score=28.69 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+||+.+|++...|..|..+++.
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 20 RQAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4678999999999999999998765
No 196
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=36.67 E-value=4.5 Score=37.34 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=32.9
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchh
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKM 292 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~ 292 (628)
+...|.+|...- .+ -+.+- .|...||..|+...+.. +...||.|....
T Consensus 53 ~~~~C~IC~~~~---~~-p~~~~-~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDML---KN-TMTTK-ECLHRFCADCIITALRS---GNKECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBC---SS-EEEET-TTCCEEEHHHHHHHHHT---TCCBCTTTCCBC
T ss_pred CCCCCcccChHh---hC-cCEeC-CCCChhHHHHHHHHHHh---CcCCCCCCCCcC
Confidence 456899998643 23 34444 39999999999765542 346799998653
No 197
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=36.56 E-value=13 Score=28.03 Aligned_cols=24 Identities=4% Similarity=0.169 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006856 525 KENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 525 r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
..+||+.+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 678999999999999999988765
No 198
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=36.53 E-value=13 Score=28.80 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+||+.+|++...|..|..+++.
T Consensus 23 sq~~lA~~~gis~~~is~~e~g~~~ 47 (73)
T 3omt_A 23 TNLWLTETLDKNKTTVSKWCTNDVQ 47 (73)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3678999999999999999998754
No 199
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=36.31 E-value=13 Score=28.73 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
+..+||+.+|++...|..|..+++.
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~~ 49 (77)
T 2b5a_A 25 SQEELADLAGLHRTYISEVERGDRN 49 (77)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 4678999999999999999998764
No 200
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=36.02 E-value=20 Score=33.57 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
.+++.+...|.-.|-+ .-.-.+||+.||+++..|+.+....|.+.++
T Consensus 187 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999888743 2345789999999999999999888885444
No 201
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=35.18 E-value=14 Score=29.36 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
+..+||+.+|++...|..|..+++.
T Consensus 27 tq~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 27 SYESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 3578999999999999999998876
No 202
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=34.18 E-value=37 Score=29.29 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006856 500 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 547 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR 547 (628)
..|+.++...+...+... + ...+||+.||++...|..|++..+
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHccc
Confidence 357899888777777543 3 357899999999999999997543
No 203
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=34.06 E-value=15 Score=28.06 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+||+.+|++...|..|..+++.
T Consensus 28 s~~~lA~~~gis~~~i~~~e~g~~~ 52 (74)
T 1y7y_A 28 SQETLAFLSGLDRSYVGGVERGQRN 52 (74)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCC
Confidence 4678999999999999999998764
No 204
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.99 E-value=12 Score=29.22 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=30.9
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+...|.+|...-. + +.- .|...||..|+...+. ....||.|...
T Consensus 14 ~~~~C~IC~~~~~---~--~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~ 57 (70)
T 2ecn_A 14 DEEECCICMDGRA---D--LIL--PCAHSFCQKCIDKWSD----RHRNCPICRLQ 57 (70)
T ss_dssp CCCCCSSSCCSCC---S--EEE--TTTEEECHHHHHHSSC----CCSSCHHHHHC
T ss_pred CCCCCeeCCcCcc---C--ccc--CCCCcccHHHHHHHHH----CcCcCCCcCCc
Confidence 3568999996432 2 333 3888899999987654 35689999754
No 205
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=33.99 E-value=20 Score=25.91 Aligned_cols=23 Identities=26% Similarity=0.720 Sum_probs=13.7
Q ss_pred ccccCCCCCCCC-CCCcccccccc
Q 006856 268 QKCLDPPLDTES-NQGWFCKFCEC 290 (628)
Q Consensus 268 ~~CL~PPL~~~P-~g~W~Cp~C~~ 290 (628)
..|..|--.... .+.|||..|..
T Consensus 6 ~~C~KPC~T~DDCS~gw~CqaC~n 29 (38)
T 4cpa_I 6 PICNKPCKTHDDCSGAWFCQACWN 29 (38)
T ss_dssp TTTTCBCSSSSSSCCCSSCCEEET
T ss_pred cccCCCccCccccccchHHHHHHh
Confidence 345444322222 57899999974
No 206
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=33.91 E-value=16 Score=28.36 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCcchhhhccchhc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNAR 547 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR 547 (628)
+..+||+.+|++...|..|..+++
T Consensus 22 sq~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 22 TINRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHCTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 357899999999999999999987
No 207
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=33.78 E-value=16 Score=28.25 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCcchhhhcc
Q 006856 524 VKENLSKELSLEPEKVNKWF 543 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWF 543 (628)
...+||+.||++..-|..|+
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 56889999999999999999
No 208
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.52 E-value=10 Score=30.63 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=32.5
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+...|.+|...-.......+.. .|...||..|+...+... .....||.|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~--~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLL--HCGHTICRQCLEKLLASS-INGVRCPFCSKI 65 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEEC--SSSCEEEHHHHHHHHHHC-SSCBCCTTTCCC
T ss_pred CCCCCccCCccccccCCCeEEC--CCCChhhHHHHHHHHHcC-CCCcCCCCCCCc
Confidence 3467999996543111113333 399999999997554322 235689999855
No 209
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=33.01 E-value=29 Score=30.21 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 553 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K~ 553 (628)
.+++.+.+.|.-+|.+. -.-.++|+.||+++..|+.+....|.+.++.
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47888888888775433 2447899999999999999999888855443
No 210
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.29 E-value=3.6 Score=31.72 Aligned_cols=50 Identities=20% Similarity=0.472 Sum_probs=31.6
Q ss_pred cccccccccccccCC--CCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~--~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+...|.+|...-... .+.++..- .|...||..|+...+.. .-.||.|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 65 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN----ANTCPTCRKK 65 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc----CCCCCCCCCc
Confidence 456799998643211 12333444 49999999999754432 2369999754
No 211
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.06 E-value=21 Score=27.80 Aligned_cols=48 Identities=27% Similarity=0.544 Sum_probs=32.3
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+...|.+|...- .+.++ .. |...||..|+...+.. ....-.||.|...
T Consensus 19 ~~~~C~IC~~~~---~~~~~-~~--CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 19 EEVICPICLDIL---QKPVT-ID--CGHNFCLKCITQIGET-SCGFFKCPLCKTS 66 (73)
T ss_dssp CCCBCTTTCSBC---SSEEE-CT--TCCEEEHHHHHHHCSS-SCSCCCCSSSCCC
T ss_pred cCCEeccCCccc---CCeEE-cC--CCChhhHHHHHHHHHc-CCCCCCCCCCCCc
Confidence 456899999643 23333 33 9899999999865542 1345689999855
No 212
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=32.04 E-value=0.85 Score=42.58 Aligned_cols=29 Identities=10% Similarity=-0.055 Sum_probs=22.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHH
Q 006856 495 IRRSFHRMPPNAVEKLRQVFAENELPSRI 523 (628)
Q Consensus 495 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~ 523 (628)
.||+|+.|+..|+++|+..|+.++||...
T Consensus 136 ~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 136 GSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -----EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 46788899999999999999999999753
No 213
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=31.32 E-value=18 Score=29.74 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
++.+||+.+|++...|..|..+++.
T Consensus 24 sq~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 24 TQLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHhCCCC
Confidence 4678999999999999999998765
No 214
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=30.92 E-value=18 Score=29.07 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcchhhhccchhc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNAR 547 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR 547 (628)
...+||+.+|++...|..|..+++
T Consensus 33 sq~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 33 TQFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCG
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 368899999999999999999887
No 215
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.85 E-value=28 Score=31.63 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
.+++.+.+.|.-.|-+. | .-.+||+.||+++..|+.+....|.+.++
T Consensus 140 ~L~~~~r~vl~l~~~~g-~----s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG-L----SYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp HSCHHHHHHHHHHHTTC-C----CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC-C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 36888888887765432 2 33689999999999999999888885444
No 216
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=29.99 E-value=2.9 Score=31.82 Aligned_cols=50 Identities=20% Similarity=0.487 Sum_probs=30.9
Q ss_pred ccccccccccccCC--CCCeeecCCccCccccccccCCCCCCCCCCCcccccccchh
Q 006856 238 HIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKM 292 (628)
Q Consensus 238 ~~~C~vC~~~~~~~--~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~ 292 (628)
...|.+|...-... .+..+..- .|...||..|+...+.. ...||.|....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 54 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN----ANTCPTCRKKI 54 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc----CCCCCCCCccC
Confidence 45788998643211 12233333 49999999999754432 24799998653
No 217
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.98 E-value=23 Score=30.70 Aligned_cols=43 Identities=19% Similarity=0.483 Sum_probs=29.0
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
...|.+|...- .+.+++.. |...|+..|+.-.+. -.||.|...
T Consensus 22 ~~~C~IC~~~~---~~pv~~~~--CgH~fC~~Ci~~~~~------~~CP~Cr~~ 64 (117)
T 1jm7_B 22 LLRCSRCTNIL---REPVCLGG--CEHIFCSNCVSDCIG------TGCPVCYTP 64 (117)
T ss_dssp TTSCSSSCSCC---SSCBCCCS--SSCCBCTTTGGGGTT------TBCSSSCCB
T ss_pred CCCCCCCChHh---hCccEeCC--CCCHHHHHHHHHHhc------CCCcCCCCc
Confidence 46799998643 23444433 777888888875543 479999865
No 218
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=29.66 E-value=7.9 Score=29.94 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=29.7
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
...|.+|...- .+.. ..- .|...||..|+...+.. ...||.|...
T Consensus 5 ~~~C~IC~~~~---~~~~-~~~-~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~ 49 (68)
T 1chc_A 5 AERCPICLEDP---SNYS-MAL-PCLHAFCYVCITRWIRQ----NPTCPLCKVP 49 (68)
T ss_dssp CCCCSSCCSCC---CSCE-EET-TTTEEESTTHHHHHHHH----SCSTTTTCCC
T ss_pred CCCCeeCCccc---cCCc-Eec-CCCCeeHHHHHHHHHhC----cCcCcCCChh
Confidence 46799998643 2222 333 48889999999754432 2479999755
No 219
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.65 E-value=65 Score=28.86 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006856 500 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
..|+.++...+...+... + ...+||+.||++...|..|++..+.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r~~~ 67 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGRYYE 67 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCCSST
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 358999888777777543 2 4568999999999999999986543
No 220
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=29.46 E-value=20 Score=28.16 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+||+.+|++...|..|..+++.
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 25 SQSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3678999999999999999998764
No 221
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=28.76 E-value=21 Score=28.26 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
+..+||+.+|++...|..|..+++.
T Consensus 29 tq~elA~~~gis~~~is~~e~g~~~ 53 (83)
T 3f6w_A 29 TQKELAARLGRPQSFVSKTENAERR 53 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCC
Confidence 4578999999999999999998765
No 222
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=28.66 E-value=21 Score=28.36 Aligned_cols=25 Identities=12% Similarity=0.360 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+||+.+|++...|..|..+++.
T Consensus 27 sq~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 27 TQSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3678999999999999999998664
No 223
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=28.59 E-value=28 Score=28.48 Aligned_cols=35 Identities=29% Similarity=0.567 Sum_probs=27.5
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccCC
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDP 273 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~P 273 (628)
-.+|.+|...-+.-..+-+.|. .|....|-.|+.-
T Consensus 34 pt~C~~C~~~lwGl~kqG~~C~-~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 34 PTFCSVCHEFVWGLNKQGYQCR-QCNAAIHKKCIDK 68 (77)
T ss_dssp CEECSSSCCEECCTTCCEEECS-SSCCEEESGGGSS
T ss_pred CcCccccChhhccccccccCcC-CCCCcCCHhHHhh
Confidence 3689999986653335678899 7999999999873
No 224
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=28.39 E-value=21 Score=28.07 Aligned_cols=25 Identities=4% Similarity=0.175 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+||+.+|++...|..|..+++.
T Consensus 17 sq~~lA~~~gis~~~i~~~e~g~~~ 41 (77)
T 2k9q_A 17 TAKSVAEEMGISRQQLCNIEQSETA 41 (77)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTCCSC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3578999999999999999998764
No 225
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=27.96 E-value=41 Score=28.17 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 547 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR 547 (628)
.|+.++...+...+. ..+ ...+||+.||++...|..|+...+
T Consensus 17 ~~s~~~r~~i~~~~~-~g~----s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGI----RPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 578888887777775 333 246799999999999999997543
No 226
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=27.85 E-value=29 Score=27.31 Aligned_cols=50 Identities=14% Similarity=0.364 Sum_probs=33.5
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCC---CCCcccccccchh
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTES---NQGWFCKFCECKM 292 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P---~g~W~Cp~C~~k~ 292 (628)
+...|.+|...-. +.++ . .|...||..|+.-.+.... ...-.||.|....
T Consensus 11 ~~~~C~IC~~~~~---~p~~-l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 11 EEVTCPICLELLT---EPLS-L--DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCEETTTTEECS---SCCC-C--SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred cCCCCcCCCcccC---CeeE-C--CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 3467999997532 2333 2 3888999999987665421 3467899998653
No 227
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=27.61 E-value=26 Score=33.41 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
+..+||+.+|++...|..|..+++.
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~~ 56 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGINA 56 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 5678999999999999999988664
No 228
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=27.29 E-value=63 Score=29.50 Aligned_cols=57 Identities=21% Similarity=0.482 Sum_probs=35.7
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchhhHH
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKMEII 295 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~~~~ 295 (628)
...|..|...-....+.=..|. .|..-+-..|-.-.........|.|..|.......
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~-~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~rel~ 111 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCE-DCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVW 111 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECT-TTCCEEETTSEEECCCSSSSCCEEEHHHHHHHHHH
T ss_pred CccccccCCCcccccCCCCCCC-CCCcccccccCCccCCCCCccceechhhHHHHHHH
Confidence 4679999875433344445676 48776666666532122335689999998776543
No 229
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.26 E-value=31 Score=32.29 Aligned_cols=54 Identities=22% Similarity=0.508 Sum_probs=35.8
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchhhH
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKMEI 294 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~~~ 294 (628)
....|..|...-....+.=..|- .|..-+-..|-. ...+...|.|..|......
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~~---~~~~~~~W~C~vC~k~rel 120 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCSH---AHPEEQGWLCDPCHLARVV 120 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGEE---CCSSSSSCEEHHHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCC-CCCchhhccccc---ccCCCCcEeeHHHHHHHHH
Confidence 35689999875333345556677 487766667763 2234688999999876553
No 230
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=27.15 E-value=68 Score=26.88 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCC--Ccchhhhccc
Q 006856 498 SFHRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSL--EPEKVNKWFK 544 (628)
Q Consensus 498 ~r~rft~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~lgL--t~~QVkiWFq 544 (628)
....++.+|+..|..+|.. +.|.+..+-..+-+.+|+ +..+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456899999999999984 479999999888888875 6667877775
No 231
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=26.92 E-value=28 Score=31.62 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006856 525 KENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 525 r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+|+.||+++.++..|+...|.
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCCB
T ss_pred HHHHHHHhCCCcccEEEEEeecCC
Confidence 477899999999999999998885
No 232
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=26.63 E-value=23 Score=28.90 Aligned_cols=25 Identities=4% Similarity=0.268 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
+..+||+.+|++...|..|+.+++.
T Consensus 23 tq~~lA~~~gis~~~is~~e~g~~~ 47 (94)
T 2ict_A 23 SLREFARAMEIAPSTASRLLTGKAA 47 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 4688999999999999999998764
No 233
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.39 E-value=32 Score=28.45 Aligned_cols=33 Identities=33% Similarity=0.628 Sum_probs=26.4
Q ss_pred cccccccccccCCCCCeeecCCccCccccccccC
Q 006856 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLD 272 (628)
Q Consensus 239 ~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~ 272 (628)
.+|.+|+..-+.-..+-+.|. .|...+|-.|+.
T Consensus 29 t~C~~C~~~lwGl~kqg~~C~-~C~~~~Hk~C~~ 61 (83)
T 2yuu_A 29 TFCSVCKDFVWGLNKQGYKCR-QCNAAIHKKCID 61 (83)
T ss_dssp CCCSSSCCCCCSSSCCEEEET-TTCCEECTTGGG
T ss_pred cChhhcChhhccccccccccC-CcCCeeChhhhh
Confidence 689999986652234678899 699999999987
No 234
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.11 E-value=8.3 Score=29.47 Aligned_cols=45 Identities=29% Similarity=0.603 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccc
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFC 288 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C 288 (628)
+...|.+|...- .+.+++ . |...||..|+...+.. ......||.|
T Consensus 19 ~~~~C~IC~~~~---~~p~~~-~--CgH~fC~~Ci~~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDIL---QKPVTI-D--CGHNFCLKCITQIGET-SCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBC---SSCEEC-T--TSSEECHHHHHHHHHH-CSSCCCCSCC
T ss_pred cCCCCCcCCchh---CCeEEe-C--CCCcchHHHHHHHHHc-CCCCCcCcCC
Confidence 456899999643 233433 3 8888999998755432 1234568877
No 235
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=26.10 E-value=24 Score=28.91 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 550 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~ 550 (628)
.+++.+.+.|...|--..- ..-.-.+||+.||+++..|+.|....+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4789999999888852100 112356899999999999999887777643
No 236
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=25.85 E-value=25 Score=28.36 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+||+.+|++...|..|..+++.
T Consensus 32 sq~~lA~~~gis~~~is~~e~g~~~ 56 (92)
T 1lmb_3 32 SQESVADKMGMGQSGVGALFNGINA 56 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3688999999999999999998764
No 237
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=25.62 E-value=25 Score=28.74 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006856 525 KENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 525 r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
..+||+.||++..-|..|+.+...
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~i 36 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEI 36 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCC
Confidence 789999999999999999976444
No 238
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=25.51 E-value=26 Score=27.65 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
+..+||+.+|++...|..|..+++.
T Consensus 26 sq~~lA~~~gis~~~i~~~e~g~~~ 50 (82)
T 3s8q_A 26 TQEDLAYKSNLDRTYISGIERNSRN 50 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCCC
Confidence 4678999999999999999998764
No 239
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=25.30 E-value=40 Score=26.54 Aligned_cols=33 Identities=21% Similarity=0.496 Sum_probs=26.3
Q ss_pred cccccccccccCCCCCeeecCCccCccccccccC
Q 006856 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLD 272 (628)
Q Consensus 239 ~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~ 272 (628)
.+|..|+..-+.-..+-+.|. .|....|-.|+.
T Consensus 24 t~C~~C~~~l~Gl~~qg~~C~-~C~~~~Hk~C~~ 56 (65)
T 2enz_A 24 TFCEHCGTLLWGLARQGLKCD-ACGMNVHHRCQT 56 (65)
T ss_dssp CBCSSSCCBCCCSSSCSEEES-SSCCEECTTTTT
T ss_pred cCchhcChhheecCCcccccC-CCCCccCHhHHh
Confidence 689999986653234668899 799999999986
No 240
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=25.24 E-value=26 Score=29.29 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
+..+||+.+|++...|..|..+++-
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~~ 63 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNENV 63 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCc
Confidence 5788999999999999999999763
No 241
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.90 E-value=52 Score=24.67 Aligned_cols=42 Identities=19% Similarity=0.651 Sum_probs=26.8
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+...|.+|...-. .-.++ .|...|+..|+.. ....||.|...
T Consensus 5 ~~~~C~IC~~~~~--~p~~l----~CgH~fC~~Ci~~-------~~~~CP~Cr~~ 46 (56)
T 1bor_A 5 QFLRCQQCQAEAK--CPKLL----PCLHTLCSGCLEA-------SGMQCPICQAP 46 (56)
T ss_dssp CCSSCSSSCSSCB--CCSCS----TTSCCSBTTTCSS-------SSSSCSSCCSS
T ss_pred cCCCceEeCCccC--CeEEc----CCCCcccHHHHcc-------CCCCCCcCCcE
Confidence 4567999986443 11233 3767777888764 23579999855
No 242
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=24.84 E-value=28 Score=28.42 Aligned_cols=25 Identities=4% Similarity=0.030 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
+..+||+.+|++...|..|..+++.
T Consensus 19 tq~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 19 SRQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp CHHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3578999999999999999999775
No 243
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=24.50 E-value=44 Score=32.08 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006856 500 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
..+|+.+.+.|.-.+.- + .-.+||+.||+++..|+....|-+.|
T Consensus 174 ~~Lt~~e~~vl~~~~~g--~----s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 174 QMLSPREMLCLVWASKG--K----TASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GSCCHHHHHHHHHHHTT--C----CHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45899999999775432 2 34789999999999999998887773
No 244
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=24.44 E-value=78 Score=27.13 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC--CCcchhhhccchhcc
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELS--LEPEKVNKWFKNARY 548 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lg--Lt~~QVkiWFqNrR~ 548 (628)
.+++++...+... ..++.-+. .+||..|| ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 4789988877776 55554444 57899999 688899999976554
No 245
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=24.28 E-value=1e+02 Score=27.08 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh--------C--CCcchhhhccchhcc
Q 006856 499 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKEL--------S--LEPEKVNKWFKNARY 548 (628)
Q Consensus 499 r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~l--------g--Lt~~QVkiWFqNrR~ 548 (628)
...+++++...|.+++.+++..+. .+|+..| | ++...|..|+.....
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~---~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFA---WEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCH---HHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred CCCCCHHHHHHHHHHHHhCcchhH---HHHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 345799999999999988876554 3455555 6 688889998865443
No 246
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=24.20 E-value=29 Score=27.62 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCcchhhhccch
Q 006856 524 VKENLSKELSLEPEKVNKWFKN 545 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqN 545 (628)
++.+||+.+|++...|..|..+
T Consensus 25 tq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 25 SLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 4578999999999999999998
No 247
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.04 E-value=20 Score=26.87 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.2
Q ss_pred HHHHHHhCCCcchhhhccchhccH
Q 006856 526 ENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 526 ~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
.++|+.||+++..|+.+..+-+.+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 589999999999999988877764
No 248
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=23.95 E-value=11 Score=32.89 Aligned_cols=47 Identities=23% Similarity=0.499 Sum_probs=31.3
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchh
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKM 292 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~ 292 (628)
+...|.+|...-. +.++ .. |...||..|+...+. .....||.|....
T Consensus 51 ~~~~C~IC~~~~~---~p~~-~~--CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPIT-TV--CQHNVCKDCLDRSFR---AQVFSCPACRYDL 97 (124)
T ss_dssp HHTBCTTTSSBCS---SEEE-CT--TSCEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred cCCCCCcCChHHc---CcEE-ee--CCCcccHHHHHHHHh---HCcCCCCCCCccC
Confidence 3467999996432 2333 33 888999999976544 2345899998654
No 249
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.83 E-value=22 Score=26.30 Aligned_cols=45 Identities=16% Similarity=0.468 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccc
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFC 288 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C 288 (628)
+...|.+|...-. +.++ - .|...||..|+...+... .....||.|
T Consensus 14 ~~~~C~IC~~~~~---~p~~-~--~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK---EPVI-I--ECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS---SCCC-C--SSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred cCCCCccCCcccC---ccEe-C--CCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 3467999997543 2222 2 388889999987654332 245678877
No 250
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=23.43 E-value=28 Score=28.18 Aligned_cols=25 Identities=8% Similarity=0.309 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
+..+||+.+|++...|..|..+++.
T Consensus 28 sq~~lA~~~gis~~~is~~e~g~~~ 52 (91)
T 1x57_A 28 TQKDLATKINEKPQVIADYESGRAI 52 (91)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4578999999999999999998764
No 251
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=23.40 E-value=1.2e+02 Score=26.96 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCcch
Q 006856 499 FHRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEK 538 (628)
Q Consensus 499 r~rft~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~lgLt~~Q 538 (628)
+..+|++|++.|..+|.. +.+.+..+-..+-+.||+.+..
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 356899999999999984 4789999988888999987765
No 252
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=22.84 E-value=58 Score=27.16 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006856 499 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 499 r~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...||+.+.+.|.-++ ..| .-.+||+.||+++..|+....+-+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~----s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGF----TNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4568999999998776 233 4678999999999999987766554
No 253
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=22.54 E-value=17 Score=30.92 Aligned_cols=47 Identities=21% Similarity=0.537 Sum_probs=31.4
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchh
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKM 292 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~ 292 (628)
+...|.+|...- .+. +... .|...||..|+...+... -.||.|....
T Consensus 14 ~~~~C~IC~~~~---~~p-~~~~-~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~ 60 (108)
T 2ckl_A 14 PHLMCVLCGGYF---IDA-TTII-ECLHSFCKTCIVRYLETS----KYCPICDVQV 60 (108)
T ss_dssp GGTBCTTTSSBC---SSE-EEET-TTCCEEEHHHHHHHHTSC----SBCTTTCCBS
T ss_pred CcCCCccCChHH---hCc-CEeC-CCCChhhHHHHHHHHHhC----CcCcCCCccc
Confidence 346799998643 233 3443 388899999987554432 5799998653
No 254
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.52 E-value=56 Score=28.83 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006856 500 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 547 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR 547 (628)
..|+.++.......+.. .+ ...+||+.||++...|..|+...+
T Consensus 31 ~~~s~e~r~~iv~~~~~-G~----s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ-GV----RPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp SCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35899988877777753 33 356799999999999999997544
No 255
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=22.26 E-value=65 Score=27.63 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
.+++.|...|.-.|..+.+ ..-.-.+||+.||++...|+......+.+.++
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4788898888888864322 12345789999999999999987776664433
No 256
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.10 E-value=50 Score=27.51 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=26.8
Q ss_pred ccccccccccccCCCCCeeecCCccCccccccccC
Q 006856 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLD 272 (628)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~ 272 (628)
-.+|.+|+..-+.-..+-+.|. .|...+|-.|+.
T Consensus 28 pt~C~~C~~~l~Gl~kqG~~C~-~C~~~~Hk~C~~ 61 (85)
T 2eli_A 28 PTFCDHCGSLLYGLIHQGMKCD-TCDMNVHKQCVI 61 (85)
T ss_dssp CCBCSSSCCBCCCSSSCEEECS-SSCCEEETTTTT
T ss_pred CcCCcccCccccccccCCCcCC-CcCCccCHhHHh
Confidence 3689999976652234778899 799999999987
No 257
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=21.92 E-value=27 Score=28.30 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
+..+||+.+|++...|..|-.+++.
T Consensus 29 tq~elA~~~gis~~~is~~E~G~~~ 53 (86)
T 3eus_A 29 TQADLAERLDKPQSFVAKVETRERR 53 (86)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCCC
Confidence 4568999999999999999998875
No 258
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.85 E-value=13 Score=29.63 Aligned_cols=49 Identities=18% Similarity=0.504 Sum_probs=31.5
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCC--CCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTE--SNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~--P~g~W~Cp~C~~k 291 (628)
+...|.+|...-. +.+ .. .|...||..|+...+... ..+...||.|...
T Consensus 18 ~~~~C~IC~~~~~---~p~-~~--~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 18 EEVTCPICLELLK---EPV-SA--DCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68 (85)
T ss_dssp TTTSCTTTCSCCS---SCE-EC--TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCC
T ss_pred cCCCCcCCChhhC---cce-eC--CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCc
Confidence 3467999986432 223 33 388889999987543332 1346789999855
No 259
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.71 E-value=15 Score=29.58 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=30.8
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccchh
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKM 292 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~ 292 (628)
....|.+|...- .+.+ .- .|...||..|+...+.. ...||.|....
T Consensus 14 ~~~~C~IC~~~~---~~p~-~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAF---QNPV-VT--KCRHYFCESCALEHFRA----TPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBC---CSEE-EC--TTSCEEEHHHHHHHHHH----CSBCSSSCCBC
T ss_pred CCCCCcCCCchh---cCee-Ec--cCCCHhHHHHHHHHHHC----CCcCCCcCccc
Confidence 346799998643 2233 33 48889999998765432 34799998653
No 260
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=21.55 E-value=34 Score=28.38 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
...+||+.||++...|..|-.+++.
T Consensus 45 sq~elA~~lgvs~~~is~~E~G~~~ 69 (99)
T 2ppx_A 45 TQEEFSARYHIPLGTLRDWEQGRSE 69 (99)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 3578999999999999999988765
No 261
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=21.49 E-value=23 Score=28.10 Aligned_cols=48 Identities=19% Similarity=0.535 Sum_probs=31.4
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+...|.+|...- .+.++ -. .|...||..|+...+... +...||.|...
T Consensus 14 ~~~~C~IC~~~~---~~p~~-~~-~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~ 61 (74)
T 2yur_A 14 DELLCLICKDIM---TDAVV-IP-CCGNSYCDECIRTALLES--DEHTCPTCHQN 61 (74)
T ss_dssp GGGSCSSSCCCC---TTCEE-CS-SSCCEECTTHHHHHHHHS--SSSCCSSSCCS
T ss_pred CCCCCcCCChHH---hCCeE-cC-CCCCHHHHHHHHHHHHhc--CCCcCCCCCCc
Confidence 456899998643 23333 33 288889999987654321 24579999864
No 262
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=21.14 E-value=41 Score=30.60 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006856 507 VEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 549 (628)
Q Consensus 507 ~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k 549 (628)
+.+..+.|.+..|-. .+-.+||++.|++...|-..|.|+-.-
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~L 75 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDL 75 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHH
Confidence 557788899998864 455679999999999999999998874
No 263
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=21.10 E-value=30 Score=24.24 Aligned_cols=10 Identities=40% Similarity=1.209 Sum_probs=8.7
Q ss_pred CCCccccccc
Q 006856 280 NQGWFCKFCE 289 (628)
Q Consensus 280 ~g~W~Cp~C~ 289 (628)
.++|.|+.|-
T Consensus 4 ~gDW~C~~C~ 13 (33)
T 2k1p_A 4 ANDWQCKTCS 13 (33)
T ss_dssp SSSCBCSSSC
T ss_pred CCCcccCCCC
Confidence 5899999996
No 264
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.00 E-value=50 Score=26.52 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCcchhhhccch
Q 006856 500 HRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEKVNKWFKN 545 (628)
Q Consensus 500 ~rft~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~lgLt~~QVkiWFqN 545 (628)
..++.++...|..+|.. +.+.+..+-..+-..+|++..+|..+|..
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 69 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQR 69 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 34788999999999974 46889888888889999999888888753
No 265
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=20.99 E-value=24 Score=24.57 Aligned_cols=11 Identities=27% Similarity=0.936 Sum_probs=9.0
Q ss_pred CCCcccccccc
Q 006856 280 NQGWFCKFCEC 290 (628)
Q Consensus 280 ~g~W~Cp~C~~ 290 (628)
.|+|.|+.|..
T Consensus 3 ~gDW~C~~C~~ 13 (32)
T 2lk0_A 3 FEDWLCNKCCL 13 (32)
T ss_dssp CSEEECTTTCC
T ss_pred CCCCCcCcCcC
Confidence 48999999963
No 266
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=20.98 E-value=36 Score=27.05 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhc
Q 006856 524 VKENLSKELSLEPEKVNKWFKNAR 547 (628)
Q Consensus 524 ~r~~LA~~lgLt~~QVkiWFqNrR 547 (628)
...+||+.+|++...|..|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 567999999999999999999987
No 267
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=20.89 E-value=12 Score=32.23 Aligned_cols=51 Identities=20% Similarity=0.475 Sum_probs=32.1
Q ss_pred cccccccccccccCC--CCCeeecCCccCccccccccCCCCCCCCCCCcccccccchh
Q 006856 237 EHIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECKM 292 (628)
Q Consensus 237 e~~~C~vC~~~~~~~--~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k~ 292 (628)
+...|.+|...-..+ ++..+..- .|...||..|+...+... -.||.|....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~ 58 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA----NTCPTCRKKI 58 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTC----SBCTTTCCBC
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhC----CCCCCCCCcC
Confidence 356799998543211 12222333 499999999998665433 3899998654
No 268
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.70 E-value=16 Score=28.12 Aligned_cols=46 Identities=22% Similarity=0.510 Sum_probs=31.0
Q ss_pred cccccccccccccCCCCCeeecCCccCccccccccCCCCCCCCCCCcccccccch
Q 006856 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESNQGWFCKFCECK 291 (628)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~PPL~~~P~g~W~Cp~C~~k 291 (628)
+...|.+|...-. +.++ - .|...||..|+...+. .....||.|...
T Consensus 14 ~~~~C~IC~~~~~---~p~~--~-~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 14 DKYKCEKCHLVLC---SPKQ--T-ECGHRFCESCMAALLS---SSSPKCTACQES 59 (66)
T ss_dssp CCEECTTTCCEES---SCCC--C-SSSCCCCHHHHHHHHT---TSSCCCTTTCCC
T ss_pred cCCCCCCCChHhc---CeeE--C-CCCCHHHHHHHHHHHH---hCcCCCCCCCcC
Confidence 3467999986542 2232 2 3888899999986653 234579999755
No 269
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.69 E-value=65 Score=26.17 Aligned_cols=44 Identities=7% Similarity=0.097 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCcchhhhccc
Q 006856 501 RMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEKVNKWFK 544 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~lgLt~~QVkiWFq 544 (628)
.+++++...|.+.|.. +.|.+..+-..+-+.+|++..+|..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3688999999999974 4688888888888889999988887775
No 270
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=20.63 E-value=40 Score=24.81 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=26.1
Q ss_pred cccccccccccCCCCCeeecCCccCccccccccC
Q 006856 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLD 272 (628)
Q Consensus 239 ~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~ 272 (628)
.+|..|+..-+.-..+-+.|. .|....|-.|..
T Consensus 12 t~C~~C~~~l~g~~~qg~~C~-~C~~~~H~~C~~ 44 (50)
T 1ptq_A 12 TFCDHCGSLLWGLVKQGLKCE-DCGMNVHHKCRE 44 (50)
T ss_dssp CBCTTTCCBCCSSSSCEEEET-TTCCEECHHHHT
T ss_pred CCcCCCCceeeccCCccCEeC-CCCCeECHHHhh
Confidence 589999976642235778899 699999999986
No 271
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=20.61 E-value=50 Score=24.51 Aligned_cols=29 Identities=28% Similarity=0.681 Sum_probs=24.6
Q ss_pred cccccccccccCCCCCeeecCCccCccccccccC
Q 006856 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLD 272 (628)
Q Consensus 239 ~~C~vC~~~~~~~~g~lllCDG~C~rayH~~CL~ 272 (628)
.+|.+|+..-+ +-+.|. .|....|..|+.
T Consensus 15 t~C~~C~~~l~----qG~~C~-~C~~~~H~~C~~ 43 (52)
T 1faq_A 15 AFCDICQKFLL----NGFRCQ-TCGYKFHEHCST 43 (52)
T ss_dssp EECTTSSSEEC----SEEECT-TTTCCBCSTTSS
T ss_pred cCCCCcccccc----cCCEeC-CCCCeEChhHHh
Confidence 68999997654 568999 699999999987
No 272
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=20.43 E-value=37 Score=25.77 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=21.8
Q ss_pred HHHHHHHHhC--CCcchhhhccchhcc
Q 006856 524 VKENLSKELS--LEPEKVNKWFKNARY 548 (628)
Q Consensus 524 ~r~~LA~~lg--Lt~~QVkiWFqNrR~ 548 (628)
...+||+.+| ++...|..|..+++.
T Consensus 23 sq~~lA~~~g~~is~~~i~~~e~g~~~ 49 (71)
T 2ewt_A 23 SLHGVEEKSQGRWKAVVVGSYERGDRA 49 (71)
T ss_dssp CHHHHHHHTTTSSCHHHHHHHHHTCSC
T ss_pred CHHHHHHHHCCcCCHHHHHHHHCCCCC
Confidence 4578999999 999999999988764
No 273
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=20.18 E-value=75 Score=28.69 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006856 501 RMPPNAVEKLRQVFAE----NELPSRIVKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~----~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
-+|..++..|-..+.. +++|+.. +||+.+|+++.+|....++=-.
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHH
Confidence 3688888877777663 5777774 6999999999999988876433
No 274
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=20.12 E-value=18 Score=32.67 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006856 501 RMPPNAVEKLRQVFAEN-ELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 552 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~-~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~k~~K 552 (628)
.+++.+.+.|.-.|-+. .| .+||+.||+++..|+.+....|.+.++
T Consensus 135 ~L~~~~r~vl~l~~~~g~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDLTH------RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHHSCCSS------CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCH------HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 36888888888755433 33 468999999999999999888875443
No 275
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.02 E-value=42 Score=29.30 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006856 501 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 548 (628)
Q Consensus 501 rft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgLt~~QVkiWFqNrR~ 548 (628)
.++++++..|..... -++.+||+.||++...|..|-.+++.
T Consensus 70 ~~~~~~l~~~R~~~g-------lsq~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLS-------LTQKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp TCCHHHHHHHHHHTT-------CCHHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCCHHHHHHHHHHcC-------CCHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 357777777765543 34578999999999999999998774
Done!