BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006857
(628 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 87/122 (71%), Positives = 105/122 (86%)
Query: 488 RVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTG 547
RVP+FE MD++LLDA+C+ LKP L+TEKS++VREGDPV EMLF++RG L S TT GGR+G
Sbjct: 10 RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 69
Query: 548 FFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQF 607
F+N LK GDFCG+ LLTWALDP+S SN P STRTV+ALTEVEAF+L+AD+LK VASQF
Sbjct: 70 FYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQF 129
Query: 608 RR 609
RR
Sbjct: 130 RR 131
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Query: 425 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484
K + EQ+MS LP + R RI Y ++++Q + +EE +L L + LR +I C
Sbjct: 11 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ-GKMFDEESILGELSEPLREEIINFNCRK 69
Query: 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 544
L+ +P+F D + +M L+ ++ +I+REG ++M F+ G +VS T G
Sbjct: 70 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 128
Query: 545 RTGFFNAVYLKAGDFCGE-ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSV 603
+ L G + GE LLT R T +V+A T +SL D+ V
Sbjct: 129 K-----ETKLADGSYFGEICLLT----------RGRRTASVRADTYCRLYSLSVDNFNEV 173
Query: 604 ASQF 607
++
Sbjct: 174 LEEY 177
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 425 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484
K + EQ+MS LP + R +I Y ++++Q + +E+ +L L LR +I C
Sbjct: 17 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRK 75
Query: 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 544
L+ +P+F D + AM LK ++ +I+REG ++M F+ G +VS T G
Sbjct: 76 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 134
Query: 545 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 604
+ + L G + GE L R T +V+A T +SL D+ V
Sbjct: 135 K-----EMKLSDGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 180
Query: 605 SQF 607
++
Sbjct: 181 EEY 183
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 425 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484
K + EQ+MS LP + R +I Y ++++Q + +E+ +L L LR +I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 544
L+ +P+F D + AM LK ++ +I+REG ++M F+ G +VS T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 131
Query: 545 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 604
+ + L G + GE L R T +V+A T +SL D+ V
Sbjct: 132 K-----EMKLSDGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Query: 605 SQF 607
++
Sbjct: 178 EEY 180
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 425 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484
K + EQ+MS LP + R +I Y ++++Q + +E+ +L L LR +I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 544
L+ +P+F D + AM LK ++ +I+REG ++M F+ G +VS T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 131
Query: 545 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 604
+ + L G + GE L R T +V+A T +SL D+ V
Sbjct: 132 K-----EMKLSDGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Query: 605 SQF 607
++
Sbjct: 178 EEY 180
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 425 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484
K + EQ+MS LP + R +I Y ++++Q + +E+ +L L LR +I C
Sbjct: 12 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRK 70
Query: 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 544
L+ +P+F D + AM LK ++ +I+REG ++M F+ G +VS T G
Sbjct: 71 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 129
Query: 545 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 604
+ + L G + GE L R T +V+A T +SL D+ V
Sbjct: 130 K-----EMKLSDGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 175
Query: 605 SQF 607
++
Sbjct: 176 EEY 178
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 425 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484
K + EQ+MS LP + R +I Y ++++Q + +E+ +L L LR I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRK 72
Query: 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 544
L+ +P+F D + AM LK ++ +I+REG ++M F+ G +VS T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 131
Query: 545 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 604
+ + L G + GE L R T +V+A T +SL D+ V
Sbjct: 132 K-----EMKLSDGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Query: 605 SQF 607
++
Sbjct: 178 EEY 180
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 425 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484
K + EQ+MS LP + R RI Y ++++Q + +EE +L L + LR +I C
Sbjct: 11 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ-GKMFDEESILGELSEPLREEIINFNCRK 69
Query: 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 544
L+ +P+F D + +M L+ ++ +I+REG ++M F+ G +VS T G
Sbjct: 70 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 128
Query: 545 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 604
+ L G + GE L R T V+A T +SL D+ V
Sbjct: 129 K-----ETKLADGSYFGEICLL---------TRGRRTARVRADTYCRLYSLSVDNFNEVL 174
Query: 605 SQF 607
++
Sbjct: 175 EEY 177
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Query: 425 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484
K + EQ+MS LP + R +I Y ++++Q + +E+ +L L LR +I
Sbjct: 16 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNNRK 74
Query: 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 544
L+ +P+F D + AM LK ++ +I+REG ++M F+ G +VS T G
Sbjct: 75 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 133
Query: 545 RTGFFNAVYLKAGDFCGE-ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSV 603
+ + L G + GE +LLT R T +V+A T +SL D+ V
Sbjct: 134 K-----EMKLSDGSYFGEISLLT----------RGRRTASVRADTYSRLYSLSVDNFNEV 178
Query: 604 ASQF 607
++
Sbjct: 179 LEEY 182
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 425 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484
K + EQ+MS LP + R RI Y ++++Q + +EE +L L + LR +I
Sbjct: 17 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ-GKMFDEESILGELSEPLREEIINFNXRK 75
Query: 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 544
L+ +P+F D + +M L+ ++ +I+REG ++M F+ G +VS T G
Sbjct: 76 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 134
Query: 545 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 604
+ L G + GE L R T +V+A T +SL D+ V
Sbjct: 135 K-----ETKLADGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 180
Query: 605 SQF 607
++
Sbjct: 181 EEY 183
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 425 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484
K + EQ+MS LP ++R +I Y ++++Q + +EE +L L LR +I C
Sbjct: 17 KYKQVEQYMSFHKLPADMRQKIHDYYEHRYQ-GKIFDEENILSELNDPLREEIVNFNCRK 75
Query: 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 544
L+ +P+F D + AM L+ ++ +I+REG ++M F+ G T
Sbjct: 76 LVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSK 135
Query: 545 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 604
+ Y G+ C LLT + T +V+A T +SL D+ V
Sbjct: 136 EMKLTDGSYF--GEIC---LLT----------KGRRTASVRADTYCRLYSLSVDNFNEVL 180
Query: 605 SQF 607
++
Sbjct: 181 EEY 183
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 15/202 (7%)
Query: 421 EMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRH 480
+ R K + E++M +R LP +LR++I Y +Y+++ + +E + R + + +R+D+ +
Sbjct: 9 QYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANY 67
Query: 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT 540
C DL+ VP F D + + L+ ++ ++++EG + M F+ +G +V
Sbjct: 68 NCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQG-IVDII 126
Query: 541 TYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDL 600
G A L G + GE L R +V+ T FSL
Sbjct: 127 MSDGVI----ATSLSDGSYFGEICLL---------TRERRVASVKCETYCTLFSLSVQHF 173
Query: 601 KSVASQFRRLHSKQLQHAFRQV 622
V +F + + A R++
Sbjct: 174 NQVLDEFPAMRKTMEEIAVRRL 195
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 16/183 (8%)
Query: 425 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484
K + EQ+ S LP + R +I Y ++++Q + +E+ +L L LR +I C
Sbjct: 14 KYKQVEQYXSFHKLPADFRQKIHDYYEHRYQ-GKXFDEDSILGELNGPLREEIVNFNCRK 72
Query: 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 544
L+ P+F D + A LK ++ +I+REG ++ F+ G +VS T G
Sbjct: 73 LVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHG-VVSVLTKGN 131
Query: 545 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 604
+ L G + GE L R T +V+A T +SL D+ V
Sbjct: 132 K-----EXKLSDGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Query: 605 SQF 607
++
Sbjct: 178 EEY 180
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 424 VKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCW 483
+ +D + ++ LP+ L R+ Q W G++ LL++ P +LR DI HL
Sbjct: 16 TRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNK 75
Query: 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL 536
+LL ++P+FE L ++ +K F++R+GD ++ + FV G++
Sbjct: 76 ELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSM 127
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 107/299 (35%), Gaps = 85/299 (28%)
Query: 331 IKNSSMFNFGISIDALQSRVVEEHDFPKKFF---YCFWWGLRNLSSLG-QNLKTSTFVGE 386
I +++F + AL + V+E P+KF WW + LS+ G + +F G
Sbjct: 130 IGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGR 189
Query: 387 VFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRI 446
V A + +SG+ +F L G +
Sbjct: 190 VL-AGAVMMSGIGIFGLWAGILATGF---------------------------------- 214
Query: 447 RRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDH 506
+QE R R D R+ W L+ VP+F+K+ +L +
Sbjct: 215 -------YQEVR---------------RGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRA 250
Query: 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLT 566
L+ + I R G+P + M FV+ G++ T N V L G F GE L
Sbjct: 251 LRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--------NPVELGPGAFFGEMALI 302
Query: 567 WALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFE 625
S P S TV A T V SL + D + + S S ++ FR+ E
Sbjct: 303 --------SGEPRSA-TVSAATTVSLLSLHSADFQMLCS-----SSPEIAEIFRKTALE 347
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 471 KDLRR-DIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEML 529
+++RR D R+ W L+ VP+F+K+ +L + L+ + I R G+P + M
Sbjct: 1 QEVRRGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMF 58
Query: 530 FVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTE 589
FV+ G++ T N V L G F GE L + +P+S+ TV A T
Sbjct: 59 FVVEGSVSVATP--------NPVELGPGAFFGEMALI-SGEPESA--------TVSAATT 101
Query: 590 VEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFE 625
V SL + D + + S S ++ FR+ E
Sbjct: 102 VSLLSLHSADFQMLCSS-----SPEIAEIFRKTALE 132
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 471 KDLRR-DIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEML 529
+++RR D R+ W L+ VP+F+K+ +L + L+ + I R G+P + M
Sbjct: 1 QEVRRGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMF 58
Query: 530 FVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTE 589
FV+ G++ T N V L G F GE L S P S TV A T
Sbjct: 59 FVVEGSVSVATP--------NPVELGPGAFFGEMALI--------SGEPWSA-TVSAATT 101
Query: 590 VEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFE 625
V SL + D + + S S ++ FR+ E
Sbjct: 102 VSLLSLHSADFQMLCSS-----SPEIAEIFRKTALE 132
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 471 KDLRR-DIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEML 529
+++RR D R+ W L+ VP+F+K+ +L + L+ + I R G+P + M
Sbjct: 3 QEVRRGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMF 60
Query: 530 FVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTE 589
FV+ G++ T N V L G F GE L S P S TV A T
Sbjct: 61 FVVEGSVSVATP--------NPVELGPGAFFGEMALI--------SGEPRSA-TVSAATT 103
Query: 590 VEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFE 625
V SL + D + + S S ++ FR+ E
Sbjct: 104 VSLLSLHSADFQMLCSS-----SPEIAEIFRKTALE 134
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 471 KDLRR-DIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEML 529
+++RR D R+ W L+ VP+F+K+ +L + L+ + I R G+P + M
Sbjct: 1 QEVRRGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMF 58
Query: 530 FVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTE 589
FV+ G++ T N V L G F GE L S P S TV A T
Sbjct: 59 FVVEGSVSVATP--------NPVELGPGAFFGEMALI--------SGEPRSA-TVSAATT 101
Query: 590 VEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFE 625
V SL + D + + S S ++ FR+ E
Sbjct: 102 VSLLSLHSADFQMLCSS-----SPEIAEIFRKTALE 132
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 24/152 (15%)
Query: 474 RRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMR 533
R D R+ W L+ VP+F+K+ +L + L+ + I R G+P + M FV+
Sbjct: 3 RGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 60
Query: 534 GNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAF 593
G++ T N V L G F GE L S P S TV A T V
Sbjct: 61 GSVSVATP--------NPVELGPGAFFGEMALI--------SGEPRSA-TVSAATTVSLL 103
Query: 594 SLMADDLKSVASQFRRLHSKQLQHAFRQVFFE 625
SL + D + + S S ++ FR+ E
Sbjct: 104 SLHSADFQMLCSS-----SPEIAEIFRKTALE 130
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 24/152 (15%)
Query: 474 RRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMR 533
R D R+ W L+ VP+F+K+ +L + L+ + I R G+P + M FV+
Sbjct: 3 RGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 60
Query: 534 GNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAF 593
G++ T N V L G F GE L S P S TV A T V
Sbjct: 61 GSVSVATP--------NPVELGPGAFFGEMALI--------SGEPRSA-TVSAATTVSLL 103
Query: 594 SLMADDLKSVASQFRRLHSKQLQHAFRQVFFE 625
SL + D + + S S ++ FR+ E
Sbjct: 104 SLHSADFQMLCSS-----SPEIAEIFRKTALE 130
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 55/141 (39%), Gaps = 13/141 (9%)
Query: 463 EGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREG 522
E +L+ PKD+R DI HL + P F D L A+ + V I G
Sbjct: 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAG 65
Query: 523 DPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTR 582
+ V+ + FV+ G+L L GD G+ A QS +N
Sbjct: 66 ESVDSLCFVVSGSLEVIQDDE------VVAILGKGDVFGDVFWKEATLAQSCAN------ 113
Query: 583 TVQALTEVEAFSLMADDLKSV 603
V+ALT + + D L+ V
Sbjct: 114 -VRALTYCDLHVIKRDALQKV 133
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 478 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 537
KR + + L +V + E +D + D L+PV + + IV +G+P +E ++ G+
Sbjct: 147 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 206
Query: 538 STTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTV 584
F L D+ GE L NRP + V
Sbjct: 207 VLQRRSENEEFVEVGRLGPSDYFGEIALLM--------NRPRAATVV 245
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 478 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 537
KR + + L +V + E +D + D L+PV + + IV +G+P +E ++ G+
Sbjct: 149 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 208
Query: 538 STTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTV 584
F L D+ GE L NRP + V
Sbjct: 209 VLQRRSENEEFVEVGRLGPSDYFGEIALLM--------NRPRAATVV 247
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 478 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 537
KR + + L +V + E +D + D L+PV + + IV +G+P +E ++ G+
Sbjct: 151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 210
Query: 538 STTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTV 584
F L D+ GE L NRP + V
Sbjct: 211 VLQRRSENEEFVEVGRLGPSDYFGEIALLM--------NRPKAATVV 249
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTY 542
++L R +F+ ++ + A+ L+PV + + EG+P + + ++ G + +
Sbjct: 4 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 63
Query: 543 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKS 602
GR + D GE L + P++SS +TEV A S+ D L+S
Sbjct: 64 DGRENLL--TIMGPSDMFGE-LSIFDPGPRTSS--------ATTITEVRAVSMDRDALRS 112
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTY 542
++L R +F+ ++ + A+ L+PV + + EG+P + + ++ G + +
Sbjct: 28 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 87
Query: 543 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKS 602
GR + D GE L + P++SS +TEV A S+ D L+S
Sbjct: 88 DGRENLL--TIMGPSDMFGE-LSIFDPGPRTSS--------ATTITEVRAVSMDRDALRS 136
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTY 542
++L R +F+ ++ + A+ L+PV + + EG+P + + ++ G + +
Sbjct: 3 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 62
Query: 543 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKS 602
GR + D GE L + P++SS +TEV A S+ D L+S
Sbjct: 63 DGRENLLT--IMGPSDMFGE-LSIFDPGPRTSS--------ATTITEVRAVSMDRDALRS 111
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTY 542
++L R +F+ ++ + A+ L+PV + + EG+P + + ++ G + +
Sbjct: 6 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 65
Query: 543 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKS 602
GR + D GE L + P++SS +TEV A S+ D L+S
Sbjct: 66 DGRENLL--TIMGPSDMFGE-LSIFDPGPRTSS--------ATTITEVRAVSMDRDALRS 114
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 500 LDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTYGGRTGFFNAVYLKAGD 558
LD + H YT KS I+ GD E + F+++G++ + GR YL +GD
Sbjct: 6 LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIG--YLNSGD 63
Query: 559 FCGE 562
F GE
Sbjct: 64 FFGE 67
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Query: 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTY 542
++L R +F+ ++ + A+ L+PV + + EG+P + + ++ G + +
Sbjct: 28 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 87
Query: 543 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKS 602
GR D GE L + P++SS +TEV A S+ D L+S
Sbjct: 88 DGRENLL--TIXGPSDMFGE-LSIFDPGPRTSS--------ATTITEVRAVSMDRDALRS 136
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 12/119 (10%)
Query: 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTY 542
D+L R P+F +DD+ + V + EGDP + + V G + + T+
Sbjct: 5 DVLRRNPLFAALDDEQSAELRASXSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSP 64
Query: 543 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLK 601
GR V + GE L DP T T ALTEV+ +L DL+
Sbjct: 65 DGRENXLAVV--GPSELIGELSL---FDPGP------RTATGTALTEVKLLALGHGDLQ 112
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 536 LVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSL 595
LV+ T GG + FN G C L TW P+ N P ++ +Q L V++ L
Sbjct: 145 LVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWN-PQTSSFLQVLVSVQSLIL 203
Query: 596 MAD 598
+A+
Sbjct: 204 VAE 206
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 477 IKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL 536
IK + L VP F+ + +++L + D L+ Y +I+R+G + + +G +
Sbjct: 150 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKV 209
Query: 537 VST 539
T
Sbjct: 210 NVT 212
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 478 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 537
KR + DLL +P+ + + + D L +Y I+REGD E + G V
Sbjct: 119 KRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYG-AV 177
Query: 538 STTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSS 574
+ G G N LK D+ GE L L Q++
Sbjct: 178 DVSKKG--QGVINK--LKDHDYFGEVALLNDLPRQAT 210
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 478 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 537
KR + + L +V + E ++ + D L+PV + + IV +G+P ++ + G
Sbjct: 242 KRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTAS 301
Query: 538 STTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTV 584
+ L D+ GE L NRP + V
Sbjct: 302 VLQRRSPNEEYVEVGRLGPSDYFGEIALLL--------NRPRAATVV 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,415,260
Number of Sequences: 62578
Number of extensions: 695166
Number of successful extensions: 2116
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2084
Number of HSP's gapped (non-prelim): 40
length of query: 628
length of database: 14,973,337
effective HSP length: 105
effective length of query: 523
effective length of database: 8,402,647
effective search space: 4394584381
effective search space used: 4394584381
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)