Query 006857
Match_columns 628
No_of_seqs 481 out of 2996
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 15:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 3E-105 7E-110 881.5 46.8 483 81-623 66-549 (727)
2 PLN03192 Voltage-dependent pot 100.0 2.4E-71 5.3E-76 648.6 50.3 478 53-620 21-499 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 2.2E-63 4.7E-68 510.7 35.8 426 100-615 4-431 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 1.1E-63 2.4E-68 516.3 27.9 463 76-613 201-664 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 1.1E-56 2.3E-61 466.4 31.5 436 82-623 217-656 (815)
6 KOG3713 Voltage-gated K+ chann 99.6 6.2E-14 1.3E-18 147.4 17.5 195 133-419 239-437 (477)
7 PRK09392 ftrB transcriptional 99.5 1.5E-13 3.2E-18 138.1 15.8 124 483-617 6-129 (236)
8 PRK11753 DNA-binding transcrip 99.4 3.2E-12 6.9E-17 126.0 17.1 116 493-618 6-122 (211)
9 cd00038 CAP_ED effector domain 99.4 3.7E-12 8E-17 111.3 13.2 111 491-612 1-112 (115)
10 PF00520 Ion_trans: Ion transp 99.4 9.7E-13 2.1E-17 127.4 9.6 193 138-408 1-200 (200)
11 PF00027 cNMP_binding: Cyclic 99.4 1E-11 2.2E-16 104.5 12.1 89 510-609 2-91 (91)
12 smart00100 cNMP Cyclic nucleot 99.3 2.3E-11 4.9E-16 106.8 14.5 116 491-615 1-117 (120)
13 PRK10402 DNA-binding transcrip 99.3 2.2E-11 4.7E-16 121.6 13.6 108 500-618 24-132 (226)
14 KOG1419 Voltage-gated K+ chann 99.3 1.5E-11 3.4E-16 129.6 12.2 91 355-452 265-355 (654)
15 PRK11161 fumarate/nitrate redu 99.3 5.4E-11 1.2E-15 119.4 15.5 120 486-617 15-136 (235)
16 COG0664 Crp cAMP-binding prote 99.3 5.4E-11 1.2E-15 116.6 15.1 118 487-615 3-121 (214)
17 KOG0614 cGMP-dependent protein 99.3 5.7E-12 1.2E-16 132.2 6.8 127 480-615 268-395 (732)
18 KOG0614 cGMP-dependent protein 99.2 1E-11 2.2E-16 130.3 7.7 130 477-621 147-276 (732)
19 PLN02868 acyl-CoA thioesterase 99.2 1.9E-10 4.1E-15 125.1 13.9 112 483-607 7-118 (413)
20 KOG1545 Voltage-gated shaker-l 99.2 3.6E-12 7.9E-17 127.7 0.2 53 361-413 395-447 (507)
21 KOG1113 cAMP-dependent protein 99.2 6.7E-11 1.5E-15 119.4 7.8 107 483-604 121-227 (368)
22 COG2905 Predicted signal-trans 99.1 4.3E-10 9.3E-15 120.0 13.5 115 483-611 6-120 (610)
23 PRK09391 fixK transcriptional 99.1 1.1E-09 2.4E-14 109.6 14.4 105 501-619 32-137 (230)
24 TIGR03697 NtcA_cyano global ni 99.1 1.4E-09 3.1E-14 105.4 12.5 95 515-618 1-96 (193)
25 PRK13918 CRP/FNR family transc 99.0 5.1E-09 1.1E-13 102.4 13.2 83 506-600 5-90 (202)
26 PF07885 Ion_trans_2: Ion chan 99.0 5.7E-09 1.2E-13 86.0 10.4 56 358-413 23-78 (79)
27 KOG1113 cAMP-dependent protein 98.9 3.1E-09 6.6E-14 107.6 9.0 121 478-612 234-354 (368)
28 KOG4390 Voltage-gated A-type K 98.9 4.1E-10 8.8E-15 114.0 0.2 182 132-412 225-413 (632)
29 KOG1420 Ca2+-activated K+ chan 98.6 5.3E-08 1.1E-12 103.1 4.9 130 357-494 286-418 (1103)
30 KOG2968 Predicted esterase of 98.1 5.5E-06 1.2E-10 92.7 7.0 112 499-621 500-612 (1158)
31 PF08412 Ion_trans_N: Ion tran 98.1 1.8E-06 4E-11 69.6 2.4 35 82-116 36-70 (77)
32 PRK10537 voltage-gated potassi 97.9 2.3E-05 5.1E-10 84.1 8.0 56 358-413 167-222 (393)
33 KOG3684 Ca2+-activated K+ chan 97.9 0.0002 4.4E-09 75.4 14.4 58 356-413 284-341 (489)
34 PF01007 IRK: Inward rectifier 97.8 0.0001 2.2E-09 77.3 9.2 58 358-415 83-142 (336)
35 KOG2968 Predicted esterase of 97.6 0.00037 8E-09 78.6 11.0 112 503-618 111-223 (1158)
36 KOG1418 Tandem pore domain K+ 97.4 0.00033 7.2E-09 76.2 7.6 59 360-418 116-174 (433)
37 PF04831 Popeye: Popeye protei 97.1 0.021 4.6E-07 52.0 14.5 116 494-620 14-131 (153)
38 PRK11832 putative DNA-binding 96.7 0.055 1.2E-06 52.5 14.8 97 498-608 13-110 (207)
39 KOG3542 cAMP-regulated guanine 96.5 0.0063 1.4E-07 66.6 7.5 113 482-609 279-393 (1283)
40 KOG2302 T-type voltage-gated C 96.4 0.097 2.1E-06 60.1 15.8 88 80-193 1101-1200(1956)
41 KOG4404 Tandem pore domain K+ 95.2 0.004 8.6E-08 63.1 -0.9 47 359-405 80-126 (350)
42 KOG3827 Inward rectifier K+ ch 94.8 0.11 2.3E-06 54.4 8.1 61 359-419 112-174 (400)
43 KOG4404 Tandem pore domain K+ 94.7 0.21 4.5E-06 51.1 9.7 56 360-415 187-250 (350)
44 KOG3193 K+ channel subunit [In 94.6 0.027 5.9E-07 60.5 3.3 40 360-399 218-257 (1087)
45 PLN03223 Polycystin cation cha 94.3 3.8 8.3E-05 49.7 19.9 67 86-156 1169-1235(1634)
46 KOG1418 Tandem pore domain K+ 91.3 0.045 9.7E-07 59.5 -0.9 49 358-406 241-297 (433)
47 KOG3542 cAMP-regulated guanine 90.3 0.42 9.1E-06 53.0 5.2 92 483-597 36-127 (1283)
48 COG4709 Predicted membrane pro 84.6 4.7 0.0001 38.2 7.9 73 426-500 7-83 (195)
49 KOG2301 Voltage-gated Ca2+ cha 81.0 16 0.00035 46.2 12.8 115 132-282 870-985 (1592)
50 PF08006 DUF1700: Protein of u 80.3 8.9 0.00019 36.6 8.5 57 424-482 5-65 (181)
51 PF07883 Cupin_2: Cupin domain 75.2 6.1 0.00013 30.8 4.8 45 510-561 3-48 (71)
52 PLN03192 Voltage-dependent pot 67.2 2.1E+02 0.0046 34.3 17.4 44 436-484 357-400 (823)
53 TIGR03037 anthran_nbaC 3-hydro 64.6 32 0.00069 32.1 7.6 45 513-561 36-81 (159)
54 PRK13290 ectC L-ectoine syntha 63.1 49 0.0011 29.6 8.4 70 508-596 38-107 (125)
55 KOG3676 Ca2+-permeable cation 61.6 3.2E+02 0.007 32.0 19.2 73 372-445 601-680 (782)
56 PF05899 Cupin_3: Protein of u 60.2 15 0.00033 29.5 4.2 42 512-561 14-55 (74)
57 PF00060 Lig_chan: Ligand-gate 56.8 10 0.00022 34.4 3.0 75 356-436 41-115 (148)
58 PF14377 DUF4414: Domain of un 56.8 18 0.00038 31.5 4.3 45 436-480 51-105 (108)
59 KOG1054 Glutamate-gated AMPA-t 52.2 19 0.00042 40.0 4.6 71 362-438 598-668 (897)
60 KOG0500 Cyclic nucleotide-gate 52.0 2E+02 0.0043 31.8 11.9 158 359-545 142-358 (536)
61 PF07697 7TMR-HDED: 7TM-HD ext 50.9 65 0.0014 31.4 7.9 58 468-526 147-207 (222)
62 PRK13264 3-hydroxyanthranilate 50.5 46 0.001 31.6 6.3 49 509-561 37-87 (177)
63 PF13314 DUF4083: Domain of un 49.8 70 0.0015 24.3 5.8 15 420-434 42-56 (58)
64 smart00835 Cupin_1 Cupin. This 46.1 68 0.0015 29.2 6.7 54 507-562 32-87 (146)
65 PF10011 DUF2254: Predicted me 42.5 1.4E+02 0.003 32.1 9.3 59 357-415 98-156 (371)
66 COG0662 {ManC} Mannose-6-phosp 40.7 73 0.0016 28.4 5.9 48 506-560 37-85 (127)
67 COG1917 Uncharacterized conser 40.5 73 0.0016 28.3 5.9 50 507-563 45-95 (131)
68 KOG0498 K+-channel ERG and rel 40.0 1.9E+02 0.0042 33.9 10.4 43 467-509 371-418 (727)
69 KOG3614 Ca2+/Mg2+-permeable ca 34.1 1.1E+03 0.023 29.9 22.3 56 387-442 1017-1074(1381)
70 PHA02909 hypothetical protein; 33.4 42 0.00091 25.1 2.5 41 371-414 14-54 (72)
71 PRK04190 glucose-6-phosphate i 33.3 1.9E+02 0.0041 28.0 7.7 51 508-561 71-131 (191)
72 KOG3609 Receptor-activated Ca2 33.0 3.7E+02 0.0081 31.7 11.1 73 361-435 555-633 (822)
73 PF08016 PKD_channel: Polycyst 33.0 2.5E+02 0.0055 30.6 9.8 20 177-196 233-253 (425)
74 PF14377 DUF4414: Domain of un 32.2 80 0.0017 27.4 4.5 48 437-484 8-68 (108)
75 KOG2301 Voltage-gated Ca2+ cha 31.9 3.5E+02 0.0076 34.9 11.5 46 132-199 471-518 (1592)
76 KOG4440 NMDA selective glutama 29.9 93 0.002 35.1 5.4 53 361-413 615-667 (993)
77 PRK09108 type III secretion sy 28.4 2.1E+02 0.0045 30.5 7.8 68 382-449 175-242 (353)
78 COG1422 Predicted membrane pro 26.8 3.8E+02 0.0082 26.1 8.3 38 396-433 48-88 (201)
79 TIGR03404 bicupin_oxalic bicup 25.3 2E+02 0.0044 30.9 7.1 51 508-561 70-121 (367)
80 PRK06771 hypothetical protein; 25.2 3.9E+02 0.0085 22.6 7.1 37 402-438 15-51 (93)
81 TIGR03404 bicupin_oxalic bicup 24.8 2E+02 0.0044 30.8 7.0 52 507-561 247-300 (367)
82 PRK11171 hypothetical protein; 23.4 1.9E+02 0.0042 29.4 6.2 49 506-561 185-234 (266)
83 PF12973 Cupin_7: ChrR Cupin-l 23.3 2.8E+02 0.006 22.9 6.2 64 506-594 25-88 (91)
84 PF00190 Cupin_1: Cupin; Inte 22.8 2.4E+02 0.0053 25.4 6.3 55 508-563 37-97 (144)
85 PRK08156 type III secretion sy 21.6 3.4E+02 0.0074 29.0 7.8 69 384-452 170-238 (361)
86 PF02037 SAP: SAP domain; Int 21.6 1.6E+02 0.0034 19.8 3.5 26 425-450 5-35 (35)
87 COG3837 Uncharacterized conser 21.6 1.5E+02 0.0032 27.7 4.3 48 510-564 47-96 (161)
88 KOG2378 cAMP-regulated guanine 21.5 78 0.0017 34.4 2.9 44 556-608 1-45 (573)
89 COG1480 Predicted membrane-ass 20.2 4.1E+02 0.0089 30.8 8.3 34 493-526 222-255 (700)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-105 Score=881.45 Aligned_cols=483 Identities=53% Similarity=0.898 Sum_probs=441.3
Q ss_pred ccceeCCCChhHHHHHHHHHHHHHHHHhhhhhccccceecCCccccccCccchhhhhHHHHHHHHHHHHHHHhhheeeee
Q 006857 81 EKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFI 160 (628)
Q Consensus 81 ~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~ 160 (628)
.++||+|+|++++.||++++++|+|+++++|++++|+..++...| +|..+...++++|+++|+||++||++||||||+
T Consensus 66 ~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv 143 (727)
T KOG0498|consen 66 RKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV 143 (727)
T ss_pred cceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence 378999999999999999999999999999999999999999999 788899999999999999999999999999999
Q ss_pred ecCccccCCCeeecCHHHHHHHhhhhhhHHHHHhhcchhHHHHhhhccCCCCChhhhh-hhhhHHHHHHhhhhHHHhhhc
Q 006857 161 ARSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVA-KEMLKTIIFCQYVPRIARIYP 239 (628)
Q Consensus 161 ~~~~~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~-~~~lr~~~~~q~l~Rl~ri~~ 239 (628)
+++|+ ++|.||++||+|||++||++|++|++|+|++++|.++ ++..... ...|..+..+||+|||.|++|
T Consensus 144 ~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~----~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~ 214 (727)
T KOG0498|consen 144 DPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI----GSTSLALESTILVGILLLQRLPRLRRVIP 214 (727)
T ss_pred CCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee----cccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99974 7999999999999999999999999999999998876 2222222 336777788899999999999
Q ss_pred ccccccccccceehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHhhhcCCCCCCccccccCCCCCCccccc
Q 006857 240 LYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLL 319 (628)
Q Consensus 240 l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~~~~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~~~Wl 319 (628)
++.++++..+++.+++|+++++++++|||++||+||+||++|.+++++||+++ +|+
T Consensus 215 l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------------------------tw~ 270 (727)
T KOG0498|consen 215 LFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------------------------TWL 270 (727)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc------------------------ccc
Confidence 99999999999999999999899999999999999999999999999999764 333
Q ss_pred cccCCCCCCcccccccccccchhHhhhhcccccCCCchhHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHH
Q 006857 320 HGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLV 399 (628)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~giy~~~~~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~ 399 (628)
...+...++.+ ..|+||+|.++ .+|++|+|||++||||+|||+.+|+|..|++|+|++|++|++
T Consensus 271 ~~l~~~~~~~~----~~~~fg~~s~~------------~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~Gll 334 (727)
T KOG0498|consen 271 GSLGRLLSCYN----LSFTFGIYSLA------------LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLL 334 (727)
T ss_pred cccccccccCc----ccccccchhHH------------HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHH
Confidence 32110001111 33679877655 599999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHHHHHHH
Q 006857 400 LFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKR 479 (628)
Q Consensus 400 lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~ 479 (628)
+||++||||++++|+.+.|.++||.|++|+++||++|+||++||+||++|+||+|+.++|+||+++|++||++||++|++
T Consensus 335 L~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~ 414 (727)
T KOG0498|consen 335 LFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKR 414 (727)
T ss_pred HHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCe
Q 006857 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF 559 (628)
Q Consensus 480 ~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~ 559 (628)
|+|.++++++|+|+++|++++++||.++++..++|||+|++|||++++||||.+|.+++.+.++|.+ +++..|++||+
T Consensus 415 hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L~~Gd~ 492 (727)
T KOG0498|consen 415 HLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAILGPGDF 492 (727)
T ss_pred HHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEecCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999888743 45899999999
Q ss_pred EehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006857 560 CGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVF 623 (628)
Q Consensus 560 fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~r~~~ 623 (628)
|||+.++|+++. | +++||+|+|.|+++.|++++|++++++||+++++++++++|..-
T Consensus 493 ~GeEl~~~~~~~------p-~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s 549 (727)
T KOG0498|consen 493 FGEELLTWCLDL------P-QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYS 549 (727)
T ss_pred cchHHHHHHhcC------C-CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhh
Confidence 998877787741 1 37899999999999999999999999999999999998877543
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=2.4e-71 Score=648.62 Aligned_cols=478 Identities=20% Similarity=0.337 Sum_probs=394.5
Q ss_pred ccchhhhcccCCcccccccccccccc-cCccceeCCCChhHHHHHHHHHHHHHHHHhhhhhccccceecCCccccccCcc
Q 006857 53 MGSERIKSWKKPLSFRSHVMQSEKKS-VSEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKT 131 (628)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~ 131 (628)
+++..++++++.+.|+.+...++++. +..++||+|.++++++||.+++++++|+++++|+.++|.. ..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~--~~--------- 89 (823)
T PLN03192 21 SGSLSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLN--AS--------- 89 (823)
T ss_pred CcceehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeC--CC---------
Confidence 55667889999999988777666444 5559999999999999999999999999999999976631 11
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhheeeeeecCccccCCCeeecCHHHHHHHhhhhhhHHHHHhhcchhHHHHhhhccCCC
Q 006857 132 LEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVK 211 (628)
Q Consensus 132 ~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~ 211 (628)
....+.+++.++|++|++||+++|+|||+++. .|.+|.||++|++||+++||++|++|++|++++.... .....
T Consensus 90 ~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~-----~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~-~~~~~ 163 (823)
T PLN03192 90 PKRGLEIADNVVDLFFAVDIVLTFFVAYIDPR-----TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLI-TGTVK 163 (823)
T ss_pred CCCCeeeHHHHHHHHHHHHHHhheeEEEEeCC-----CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHh-cCCcc
Confidence 12346788999999999999999999999976 5789999999999999999999999999998775432 11111
Q ss_pred CChhhhhhhhhHHHHHHhhhhHHHhhhcccccccccccceehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHH
Q 006857 212 GPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRD 291 (628)
Q Consensus 212 ~~~~~~~~~~lr~~~~~q~l~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~~~~~~~~~~w~~ 291 (628)
....+ ++|+++| +.|+.|+.+++..+.+.... ...|...+..+++.++++||+||+||+++..
T Consensus 164 ~~~~~---~~l~llr----l~Rl~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~-------- 226 (823)
T PLN03192 164 LNLSY---SLLGLLR----FWRLRRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADR-------- 226 (823)
T ss_pred chHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Confidence 11122 2333322 33444444444443332211 1123444444555667899999999999831
Q ss_pred HhhhcCCCCCCccccccCCCCCCccccccccCCCCCCcccccccccccchhHhhhhcccccCCCchhHHHHHHHHHHHHh
Q 006857 292 VCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNL 371 (628)
Q Consensus 292 ~~~~~~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~~~~~giy~~~~~~~~~~~~~~~~~Y~~slyw~l~tl 371 (628)
....+.+|+.... .++ .+.+++.+|++|+||+++||
T Consensus 227 -------------------~~~~~~~Wi~~~~-------------~~~------------~~~s~~~~Yi~slYwai~Tm 262 (823)
T PLN03192 227 -------------------YPHQGKTWIGAVI-------------PNF------------RETSLWIRYISAIYWSITTM 262 (823)
T ss_pred -------------------cCCCCCchHHHhh-------------hcc------------ccCcHHHHHHHHHHHHHHHH
Confidence 0123467875411 011 36689999999999999999
Q ss_pred hccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHH
Q 006857 372 SSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQ 451 (628)
Q Consensus 372 ttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~ 451 (628)
|||||||++|.|..|++|++++|++|+++|||+||+|++++.+.+.+.++|+++++.+++||+++++|++||+||++|++
T Consensus 263 tTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~ 342 (823)
T PLN03192 263 TTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMC 342 (823)
T ss_pred hhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHhhcCChhHHHHHHHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEE
Q 006857 452 YKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFV 531 (628)
Q Consensus 452 ~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI 531 (628)
++|+. ++.++++++++||++||.+|+++++.+.++++|+|++++++++.+++..++++.|+|||.|+.|||.++++|||
T Consensus 343 ~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I 421 (823)
T PLN03192 343 LRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIV 421 (823)
T ss_pred HHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEE
Confidence 99976 46889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHH
Q 006857 532 MRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLH 611 (628)
Q Consensus 532 ~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~ 611 (628)
.+|+|++...+++++.+ +..+++|++|||.+++. .. ++++|++|.+.|+++.|++++|.++++++|+..
T Consensus 422 ~~G~V~i~~~~~~~e~~--l~~l~~Gd~FGE~~~l~---~~------p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~ 490 (823)
T PLN03192 422 VSGEVEIIDSEGEKERV--VGTLGCGDIFGEVGALC---CR------PQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDN 490 (823)
T ss_pred EecEEEEEEecCCccee--eEEccCCCEecchHHhc---CC------CCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHH
Confidence 99999998777777665 78999999999998852 12 257799999999999999999999999999987
Q ss_pred HHHHHHHHH
Q 006857 612 SKQLQHAFR 620 (628)
Q Consensus 612 ~~~l~~~~r 620 (628)
...+++..+
T Consensus 491 ~~i~~~~l~ 499 (823)
T PLN03192 491 VVILKNFLQ 499 (823)
T ss_pred HHHHHHHHH
Confidence 666666554
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-63 Score=510.71 Aligned_cols=426 Identities=25% Similarity=0.414 Sum_probs=362.0
Q ss_pred HHHHHHHHhhhhhccccceecCCccccccCccchhhhhHHHHHHHHHHHHHHHhhheeeeeecCccccCCCeeecCHHHH
Q 006857 100 VLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAI 179 (628)
Q Consensus 100 ~~~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~~G~lV~d~~~I 179 (628)
.+.++|++++++..+.|+.++ ......|..++.+.|++|++||++++||||++ +|.+|.|-.+.
T Consensus 4 s~~vLYN~~~li~r~~F~di~---------~~y~~~wl~ld~~~D~vyllDi~v~~R~gyle-------qGllV~~~~Kl 67 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDIQ---------SSYLENWLPLDYLFDFVYLLDIIVRSRTGYLE-------QGLLVKDTSKL 67 (536)
T ss_pred EEehHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh-------cCeeehhhHHH
Confidence 356789999999977777663 33456889999999999999999999999998 79999999999
Q ss_pred HHHhhhh-hhHHHHHhhcchhHHHHhhhccCCCCChhhhhhhhhHHHHHHhhhhHHHhhhcccccccccccceehHHHHH
Q 006857 180 AKRYLMS-YFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAG 258 (628)
Q Consensus 180 a~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~lr~~~~~q~l~Rl~ri~~l~~~l~~~~~~~~~~~~~~ 258 (628)
++||..+ .|.+|++|++|++++.++. ++.. ..| +.||+|++|++..+.++....+... +.
T Consensus 68 ~~hY~~s~~f~lD~l~liP~D~l~~~~------~~~~-----~~r-------~nRllk~yRl~~F~~rTetrT~~Pn-~f 128 (536)
T KOG0500|consen 68 RKHYVHSTQFKLDVLSLIPLDLLLFKD------GSAS-----LER-------LNRLLKIYRLFEFFDRTETRTTYPN-AF 128 (536)
T ss_pred HHHHHHhhhhhhhhhhhcchhHHhhcC------Ccch-----HHH-------HHHHHHHHHHHHHHHHhccccCCch-HH
Confidence 9999988 8999999999999988753 1111 122 5678888888888777765433222 22
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhhhcccchhHHHHhhhcCCCCCCccccccCCCCCCccccccccCCCCCCccccccccc
Q 006857 259 AALNLFLYM-LASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMF 337 (628)
Q Consensus 259 ~~~~ll~~~-l~~H~~~c~wy~~~~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~~~ 337 (628)
.+.+++.+. ++.||.||++|+++.. .+.+.++|.... ..+|
T Consensus 129 ri~~lv~~~~ilfHWNaClYf~iS~~---------------------------~g~~~d~wvY~~--i~d~--------- 170 (536)
T KOG0500|consen 129 RISKLVHYCLILFHWNACLYFLISKA---------------------------IGFTTDDWVYPK--INDP--------- 170 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhhHh---------------------------cCccccccccCC--ccCc---------
Confidence 255566554 5899999999999941 223456687542 1111
Q ss_pred ccchhHhhhhcccccCCCchhHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006857 338 NFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 417 (628)
Q Consensus 338 ~~giy~~~~~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~ 417 (628)
.|+ .. ...++..+|++|+||+..||||+|. ..+|.+..|.+|.|+-.++|+.+||.++|++++++.+++.
T Consensus 171 ~~~---~c------~~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna 240 (536)
T KOG0500|consen 171 EFA---TC------DAGNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNA 240 (536)
T ss_pred ccc---cc------chhHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhH
Confidence 111 00 1245899999999999999999995 5678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHHHHHHHHHhHHHhhccccccCCcH
Q 006857 418 RLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDD 497 (628)
Q Consensus 418 ~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~l~~ 497 (628)
...||+.+|+.+++||++|++|..|+.||.+||.|.|.+.+..||+++++.||+.|+.+|+.+++.+.|+++++|+.+.+
T Consensus 241 ~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~ 320 (536)
T KOG0500|consen 241 ARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEA 320 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCC
Q 006857 498 QLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNR 577 (628)
Q Consensus 498 ~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~ 577 (628)
.++.+++.++++..|.|||+|+++||.+.+||+|.+|.++++..+|++. ...+++|++|||.++++ ..+. -+.
T Consensus 321 ~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIln-i~g~--~~g 393 (536)
T KOG0500|consen 321 GLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILN-IKGN--KNG 393 (536)
T ss_pred hHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEE-EcCc--ccC
Confidence 9999999999999999999999999999999999999999998887765 78999999999999864 3332 357
Q ss_pred CCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHH
Q 006857 578 PLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQL 615 (628)
Q Consensus 578 ~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l 615 (628)
++|+++++++..+.++.|+++|+.+.+++||+-.....
T Consensus 394 NRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~ 431 (536)
T KOG0500|consen 394 NRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLE 431 (536)
T ss_pred CcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHH
Confidence 78999999999999999999999999999999764333
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-63 Score=516.34 Aligned_cols=463 Identities=20% Similarity=0.337 Sum_probs=384.4
Q ss_pred ccccCccceeCCCChhHHHHHHHHHHHHHHHHhhhhhccccceecCCccccccCccchhhhhHHHHHHHHHHHHHHHhhh
Q 006857 76 KKSVSEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQF 155 (628)
Q Consensus 76 ~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f 155 (628)
|..|..+.||-.++.|+-+||++++++.+|+++++|+.++|-.-.. ....|.+++.++|++|++||+++|
T Consensus 201 EaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~----------~~vs~lvvDSiVDVIF~vDIvLNF 270 (971)
T KOG0501|consen 201 EAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQR----------NNVSWLVVDSIVDVIFFVDIVLNF 270 (971)
T ss_pred cCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeeccccc----------CceeEEEecchhhhhhhhhhhhhc
Confidence 4444448899999999999999999999999999999977643211 245788999999999999999999
Q ss_pred eeeeeecCccccCCCeeecCHHHHHHHhhhhhhHHHHHhhcchhHHHHhhhccCCCCChhhhhhhhhHHHHHHhhhhHHH
Q 006857 156 RTGFIARSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIA 235 (628)
Q Consensus 156 ~t~y~~~~~~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~lr~~~~~q~l~Rl~ 235 (628)
+|.|+.| .||+|.||+.|+.+|||+||+||++|++|++.+..+--.. .+-.+ ....|+ +.||+
T Consensus 271 HTTFVGP------gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~d--egI~S--LFSaLK-------VVRLL 333 (971)
T KOG0501|consen 271 HTTFVGP------GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDD--EGIGS--LFSALK-------VVRLL 333 (971)
T ss_pred ceeeecC------CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhccc--ccHHH--HHHHHH-------HHHHH
Confidence 9999998 5999999999999999999999999999999877543211 22221 223344 45777
Q ss_pred hhhcccccccccccceehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHhhhcCCCCCCccccccCCCCCCc
Q 006857 236 RIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSN 315 (628)
Q Consensus 236 ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~~~~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~ 315 (628)
|+.|..+++.+..++ ..+..+..+..|+++.||+||+||.++.... .+-.++....
T Consensus 334 RLGRVaRKLD~YlEY----GAA~LvLLlC~y~lvAHWlACiWysIGd~ev--------------------~~~~~n~i~~ 389 (971)
T KOG0501|consen 334 RLGRVARKLDHYLEY----GAAVLVLLLCVYGLVAHWLACIWYSIGDYEV--------------------RDEMDNTIQP 389 (971)
T ss_pred HHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhheeccchhe--------------------eccccccccc
Confidence 788878888776543 2222344445788999999999999994210 0001123456
Q ss_pred cccccccCCCCCCcccccccccccchhHhhhhcccc-cCCCchhHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHH
Q 006857 316 NTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVV-EEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFIS 394 (628)
Q Consensus 316 ~~Wl~~~~~~~~~~~~~~~~~~~~giy~~~~~~~~~-~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~ 394 (628)
++|+-+... ++. +.|+|..- ..|.+ ..++--+.|+.|+|+.++.|||||+|++.|.+..|.+|++++|
T Consensus 390 dsWL~kLa~-----~~~--tpY~~~~s----~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mM 458 (971)
T KOG0501|consen 390 DSWLWKLAN-----DIG--TPYNYNLS----NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMM 458 (971)
T ss_pred chHHHHHHh-----hcC--CCceeccC----CCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHH
Confidence 789765432 111 44555311 11222 4667888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHH
Q 006857 395 ISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLR 474 (628)
Q Consensus 395 i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr 474 (628)
++|..+||.++|+|++++|.++.....|.+.++.+.+||+-.++|+.|.+||.+|.--.|..++|+|.+.+|.-.|++++
T Consensus 459 ii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMk 538 (971)
T KOG0501|consen 459 IIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMK 538 (971)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEe
Q 006857 475 RDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYL 554 (628)
Q Consensus 475 ~~i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l 554 (628)
.+|+.|+..+.....|.|+-.++..+++++..++..+..||+.|++.||..|.++||++|.+++...++ .+.+|
T Consensus 539 ADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE------VVAIL 612 (971)
T KOG0501|consen 539 ADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE------VVAIL 612 (971)
T ss_pred cceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc------EEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999987543 27999
Q ss_pred cCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHH
Q 006857 555 KAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSK 613 (628)
Q Consensus 555 ~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~ 613 (628)
+.||.||+.- |... ....+.++|+|+|.|.+..|.++.+.+++.-|..+...
T Consensus 613 GKGDVFGD~F--WK~~-----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanS 664 (971)
T KOG0501|consen 613 GKGDVFGDEF--WKEN-----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANS 664 (971)
T ss_pred ecCccchhHH--hhhh-----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 9999999874 4332 22346789999999999999999999999888776643
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-56 Score=466.37 Aligned_cols=436 Identities=24% Similarity=0.402 Sum_probs=371.1
Q ss_pred cceeCCCC-hhHHHHHHHHHHHHHHHHhhhhhccccceecCCccccccCccchhhhhHHHHHHHHHHHHHHHh-hheeee
Q 006857 82 KRILDPQG-PFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIF-QFRTGF 159 (628)
Q Consensus 82 ~~ii~P~s-~~~~~W~~~~~~~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l-~f~t~y 159 (628)
+..|||++ +++..|-.+..++..|++|++|+...||+....+ ...|.+.++++|++|++||++ +=|.-|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 56899999 9999999999999999999999999999985543 457889999999999999954 666667
Q ss_pred eecCccccCCCeeecCHHHHHHHhhhh-hhHHHHHhhcchhHHHHhhhccCCCCChhhhhhhhhHHHHHHhhhhHHHhhh
Q 006857 160 IARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIY 238 (628)
Q Consensus 160 ~~~~~~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~lr~~~~~q~l~Rl~ri~ 238 (628)
.- .|.+|.|.+...+||+++ .|-+|++|++|+++++..+ +....++..++|++-.|+...-+|-+++
T Consensus 288 vr-------gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~-----G~~p~wR~~R~lK~~sF~e~~~~Le~i~ 355 (815)
T KOG0499|consen 288 VR-------GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFF-----GFNPMWRANRMLKYTSFFEFNHHLESIM 355 (815)
T ss_pred ee-------CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHh-----ccchhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 65 699999999999999999 7999999999999887643 3334455555555444443222222222
Q ss_pred cccccccccccceehHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcccchhHHHHhhhcCCCCCCccccccCCCCCCccc
Q 006857 239 PLYNDVKRTSGILTETAWAGAALNLFLYM-LASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNT 317 (628)
Q Consensus 239 ~l~~~l~~~~~~~~~~~~~~~~~~ll~~~-l~~H~~~c~wy~~~~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 317 (628)
..+++..+...+.|| +..|+.+|+||..+. .++-+.+.
T Consensus 356 --------------s~~y~~RV~rT~~YmlyilHinacvYY~~Sa---------------------------yqglG~~r 394 (815)
T KOG0499|consen 356 --------------SKAYIYRVIRTTGYLLYILHINACVYYWASA---------------------------YQGLGTTR 394 (815)
T ss_pred --------------cchhhhhhHHHHHHHHHHHhhhHHHHHHHHh---------------------------hcccccce
Confidence 112222233333444 478999999998772 24456788
Q ss_pred cccccCCCCCCcccccccccccchhHhhhhcccccCCCchhHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHH
Q 006857 318 LLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISG 397 (628)
Q Consensus 318 Wl~~~~~~~~~~~~~~~~~~~~giy~~~~~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G 397 (628)
|+.. .-.+.|++|+|||..|++|+| |+..|.+..|++|..+--+.|
T Consensus 395 WVyd---------------------------------g~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mG 440 (815)
T KOG0499|consen 395 WVYD---------------------------------GEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMG 440 (815)
T ss_pred eEEc---------------------------------CCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHH
Confidence 9853 123579999999999999999 889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHHHHH
Q 006857 398 LVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDI 477 (628)
Q Consensus 398 ~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i 477 (628)
+++||.+||.|-.++...+...++||..|++.-.||+..+||++.+.||+.+|+|.|+.++..||.++++.||..|+-++
T Consensus 441 VFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dl 520 (815)
T KOG0499|consen 441 VFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDL 520 (815)
T ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCC
Q 006857 478 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAG 557 (628)
Q Consensus 478 ~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~G 557 (628)
+...+-..+.++.+|++++.+++..++-+++.+.|-|||+|++.||.+.+||+|..|.|.+....+|.. .+.+|.+|
T Consensus 521 Ai~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~---Vl~tL~~G 597 (815)
T KOG0499|consen 521 AIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTK---VLVTLKAG 597 (815)
T ss_pred eEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCE---EEEEeccc
Confidence 999999999999999999999999999999999999999999999999999999999999988666653 37999999
Q ss_pred CeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006857 558 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVF 623 (628)
Q Consensus 558 d~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~r~~~ 623 (628)
++|||++++ +.. ...+||++|+|...|.++.|+++|+.+++..||+-. +.|++..|.++
T Consensus 598 sVFGEISLL-aig-----G~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq-~iLrkkAr~ll 656 (815)
T KOG0499|consen 598 SVFGEISLL-AIG-----GGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQ-RILRKKARVLL 656 (815)
T ss_pred ceeeeeeee-eec-----CCCccchhhhhcccceeeEecHhHHHHHHHhCccHH-HHHHHHHHHHH
Confidence 999999986 332 345699999999999999999999999999999865 56666666654
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.57 E-value=6.2e-14 Score=147.38 Aligned_cols=195 Identities=19% Similarity=0.286 Sum_probs=119.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhheeeeeecCccccCCCeeecCHHHHHHHhhhh-hhHHHHHhhcchhHHHHhhhccCCC
Q 006857 133 EITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPLPQLVVLIIVPAVK 211 (628)
Q Consensus 133 ~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~ 211 (628)
...+..++.++-++|-++++++|-.+ |+ ..+++|+ -=+||++|++||.+=+.+..... .
T Consensus 239 ~p~l~~vE~vCi~WFT~E~llR~~~~---P~----------------k~~F~k~pLNIIDllAIlPFYielll~~~~~-~ 298 (477)
T KOG3713|consen 239 HPILTYVETVCIAWFTFEYLLRFLVA---PN----------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGG-E 298 (477)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHcC---ch----------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhcc-c
Confidence 34678899999999999999999653 43 4567777 46999999999975433222221 1
Q ss_pred CChhhhhhhhhHHHHHHhhhhHHHhhhccccccc--ccccceehHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcccchh
Q 006857 212 GPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVK--RTSGILTETAWAGAALNLFLYM-LASHIFGACWYLYSIERQDSC 288 (628)
Q Consensus 212 ~~~~~~~~~~lr~~~~~q~l~Rl~ri~~l~~~l~--~~~~~~~~~~~~~~~~~ll~~~-l~~H~~~c~wy~~~~~~~~~~ 288 (628)
+... ..++.+.+++++ +.|++|+++|.++-. ++.|.-.+ +-+.-+..|++|+ +..-+++.+-|++-.+.
T Consensus 299 ~~~~--l~~~~~vvrvlR-~lRI~RI~KLaRhS~GLr~lg~Tlr-~S~~ElglLllfL~~GI~iFStlvY~~Ek~~---- 370 (477)
T KOG3713|consen 299 SLKE--LENAGLVVRVLR-VLRILRIFKLARHSTGLRTLGLTLR-RSYRELGLLLLFLAVGIVIFSTLVYFAEKDE---- 370 (477)
T ss_pred hHHH--HhhhhhhHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----
Confidence 1111 122222222222 445555555544322 11111000 1111123333333 34667777777754210
Q ss_pred HHHHhhhcCCCCCCccccccCCCCCCccccccccCCCCCCcccccccccccchhHhhhhcccccCCCchhHHHHHHHHHH
Q 006857 289 WRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGL 368 (628)
Q Consensus 289 w~~~~~~~~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~~~~~giy~~~~~~~~~~~~~~~~~Y~~slyw~l 368 (628)
++ +. +..--.|+|||+
T Consensus 371 ---------------------------------------~~-----~~--------------------FtSIPa~~WWai 386 (477)
T KOG3713|consen 371 ---------------------------------------PD-----TK--------------------FTSIPAGFWWAV 386 (477)
T ss_pred ---------------------------------------CC-----CC--------------------Cccccchhheee
Confidence 00 00 122235899999
Q ss_pred HHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006857 369 RNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRL 419 (628)
Q Consensus 369 ~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~ 419 (628)
.|||||||||.+|.|...++++..+++.|+++.|+-|..|.+-+.....+.
T Consensus 387 VTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~ 437 (477)
T KOG3713|consen 387 VTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSEL 437 (477)
T ss_pred EEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHH
Confidence 999999999999999999999999999999999998877766665544433
No 7
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.53 E-value=1.5e-13 Score=138.15 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=109.0
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEeh
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (628)
.+.++.+|+|+.++++.++.++...+.+.|++|+.|+++|++++.+|+|.+|.|+++...+|++.. +..+.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 467899999999999999999999999999999999999999999999999999998766666554 899999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHH
Q 006857 563 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 563 ~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~ 617 (628)
.+++ ... ++.++++|.++|+++.+++++|.+++.++|.+....++.
T Consensus 84 ~~~~---~~~------~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~ 129 (236)
T PRK09392 84 AAVV---LDA------PYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFE 129 (236)
T ss_pred HHHh---CCC------CCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHH
Confidence 9874 222 257799999999999999999999999999987554443
No 8
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.44 E-value=3.2e-12 Score=125.99 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=99.3
Q ss_pred cCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEehhhhhhhcCC
Q 006857 493 EKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDP 571 (628)
Q Consensus 493 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~ 571 (628)
+.++++.++.+++.++.+.|++|++|+.+|++++.+|+|.+|.++++..+ +|++.. +..+++|++||+..++. +
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~~---~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFE---E 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhcc---C
Confidence 56899999999999999999999999999999999999999999997644 566655 78999999999998752 1
Q ss_pred CCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 572 QSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 572 ~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
.++++.+++|.++|+++.+++++|.+++.++|++....++..
T Consensus 81 -----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 122 (211)
T PRK11753 81 -----GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQM 122 (211)
T ss_pred -----CCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 123567899999999999999999999999999875444433
No 9
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.40 E-value=3.7e-12 Score=111.30 Aligned_cols=111 Identities=27% Similarity=0.488 Sum_probs=96.9
Q ss_pred cccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEehhhhhhhc
Q 006857 491 MFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWAL 569 (628)
Q Consensus 491 lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l 569 (628)
+|+.++++.+..++..++.+.+++|++|+.+|++.+.+|+|.+|.++++..+ +|++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 4788999999999999999999999999999999999999999999997644 445544 7899999999999875
Q ss_pred CCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHH
Q 006857 570 DPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 612 (628)
Q Consensus 570 ~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~ 612 (628)
.. ..+..+++|.++|+++.++.++|.+++.++|.+..
T Consensus 76 ~~------~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 76 GN------GPRSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred cC------CCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 11 12567999999999999999999999999998764
No 10
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.39 E-value=9.7e-13 Score=127.41 Aligned_cols=193 Identities=19% Similarity=0.302 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHhhheeeeeecCccccCCCeeecCHHHHHHHhhhh-hhHHHHHhhcchhHHHHhhhccCCCCChhh
Q 006857 138 VLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPLPQLVVLIIVPAVKGPVPL 216 (628)
Q Consensus 138 ~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~ 216 (628)
+++.+.+++|.+|+++++.+.... +++|+++ |.++|+++++|..........+ ..+.
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~------------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~- 58 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK------------------RRRYFRSWWNWFDFISVIPSIVSVILRSYG---SASA- 58 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-------------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS-----HH-
T ss_pred CChHHHHHHHHHHHHHHHHHhccH------------------HHHHhcChhhcccccccccccccccccccc---cccc-
Confidence 368899999999999999865431 6789998 6789999999996554432211 1110
Q ss_pred hhhhhhHHHHHHhhhhHHHhhhcccccccccccceehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHhhhc
Q 006857 217 VAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKL 296 (628)
Q Consensus 217 ~~~~~lr~~~~~q~l~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~~~~~~~~~~w~~~~~~~ 296 (628)
...+++.++++ +.|++|+.+..+.+.+....+. .........++++++..|..||+++.+.......|+.
T Consensus 59 --~~~~~~~~~l~-~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~------ 128 (200)
T PF00520_consen 59 --QSLLRIFRLLR-LLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD------ 128 (200)
T ss_dssp --CHCHHHHHHHH-HHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------
T ss_pred --cceEEEEEeec-cccccccccccccccccccccc-cccccccccccccccccccccchhheecccccccccc------
Confidence 12233333332 3455555555554444332222 1222233444456678999999999887433222110
Q ss_pred CCCCCCccccccCCCCCCccccccccCCCCCCcccccccccccchhHhhhhcccccCCCchhHHHHHHHHHHHHhhccCC
Q 006857 297 NDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQ 376 (628)
Q Consensus 297 ~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~~~~~giy~~~~~~~~~~~~~~~~~Y~~slyw~l~tlttvGy 376 (628)
..+-.. ++ ....+..+.|..|+||+++++|+.|+
T Consensus 129 -------------------~~~~~~-------~~--------------------~~~~~~f~~~~~s~~~~~~~~t~~~~ 162 (200)
T PF00520_consen 129 -------------------PTWDSE-------ND--------------------IYGYENFDSFGESLYWLFQTMTGEGW 162 (200)
T ss_dssp ---------------------SS-------------------------------SSTHHHHSSHHHHHHHHHHHHTTTTC
T ss_pred -------------------cccccc-------cc--------------------cccccccccccccccccccccccCCc
Confidence 000000 00 01224457799999999999999999
Q ss_pred CccccC-----chhhHHHH-HHHHHHHHHHHHHHHHHH
Q 006857 377 NLKTST-----FVGEVFFA-IFISISGLVLFALLIGNM 408 (628)
Q Consensus 377 gd~~~~-----~~~E~~~~-i~~~i~G~~lfa~lig~~ 408 (628)
|+..+. +..+.++. +++.+.+.+++++++|.|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 163 GDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp CCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999987 78899988 777777779999999976
No 11
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.35 E-value=1e-11 Score=104.51 Aligned_cols=89 Identities=26% Similarity=0.405 Sum_probs=77.9
Q ss_pred EEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecC-CeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcc
Q 006857 510 VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYG-GRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT 588 (628)
Q Consensus 510 ~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~-g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t 588 (628)
+.|++|++|+++|++++++|+|++|.+++...+. ++... +..+.+|++||+.+++... ++..+++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~~~---------~~~~~~~a~~ 70 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQI--IFFLGPGDIFGEIELLTGK---------PSPFTVIALT 70 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEE--EEEEETTEEESGHHHHHTS---------BBSSEEEESS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeee--ecceeeeccccceeecCCC---------ccEEEEEEcc
Confidence 6799999999999999999999999999987664 44433 7899999999999886322 2577999999
Q ss_pred eEEEEEeeHHHHHHHHHHhHH
Q 006857 589 EVEAFSLMADDLKSVASQFRR 609 (628)
Q Consensus 589 ~~ell~L~~~~f~~ll~~~p~ 609 (628)
+|+++.|++++|.++++++|+
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSHH
T ss_pred CEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999995
No 12
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.35 E-value=2.3e-11 Score=106.85 Aligned_cols=116 Identities=24% Similarity=0.365 Sum_probs=98.9
Q ss_pred cccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEehhhhhhhc
Q 006857 491 MFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWAL 569 (628)
Q Consensus 491 lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l 569 (628)
+|.+++++.++.++..++.+.+++|++|+++|++++++|+|.+|.++++..+ +|++.. +..+.+|++||+..++. .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~~-~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALLT-N 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhcc-C
Confidence 4788999999999999999999999999999999999999999999998754 455444 79999999999998741 1
Q ss_pred CCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHH
Q 006857 570 DPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQL 615 (628)
Q Consensus 570 ~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l 615 (628)
.+ .++..+++|.++|+++.++.+++...+..+|.+..+.+
T Consensus 78 ~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 78 SR------RAASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred CC------cccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 11 12567899999999999999999999999998765544
No 13
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.31 E-value=2.2e-11 Score=121.62 Aligned_cols=108 Identities=20% Similarity=0.263 Sum_probs=90.7
Q ss_pred HHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCC
Q 006857 500 LDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRP 578 (628)
Q Consensus 500 l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~ 578 (628)
..++....+.+.|++|+.|+++||+++++|+|.+|.|+++.. .+|++.+ +..+.+|++||+.+++ .. .
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~---~~------~ 92 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI---DK------D 92 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh---cC------C
Confidence 345777889999999999999999999999999999999764 4577655 7899999999999864 21 2
Q ss_pred CcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 579 LSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 579 ~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
+++.+++|+++|+++.+++++|.+++.++|.+....++..
T Consensus 93 ~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l 132 (226)
T PRK10402 93 HETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFL 132 (226)
T ss_pred CCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHH
Confidence 2577999999999999999999999999998776544433
No 14
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.30 E-value=1.5e-11 Score=129.63 Aligned_cols=91 Identities=23% Similarity=0.313 Sum_probs=74.6
Q ss_pred CchhHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006857 355 DFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMS 434 (628)
Q Consensus 355 ~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~ 434 (628)
+-+.-|-.|+||++.|+||+||||++|.+...++++.++.++|+.+||+--|.+++=+.-. -+++.|+ ++|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALK--VQeq~RQ-----KHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALK--VQEQHRQ-----KHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhh--hHHHHHH-----HHHHh
Confidence 3356788899999999999999999999999999999999999999999888777665422 2233333 37778
Q ss_pred hcCCCHhHHHHHHHHHHH
Q 006857 435 HRMLPENLRDRIRRYEQY 452 (628)
Q Consensus 435 ~~~lp~~L~~rV~~y~~~ 452 (628)
+++.-..|.+-..|||.-
T Consensus 338 rr~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYAA 355 (654)
T ss_pred hcchHHHHHHHHHHHHhc
Confidence 888888999999998764
No 15
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.29 E-value=5.4e-11 Score=119.41 Aligned_cols=120 Identities=14% Similarity=0.225 Sum_probs=98.3
Q ss_pred hhccccccCCcHHHHHHHHhccce-EEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEehh
Q 006857 486 LMRVPMFEKMDDQLLDAMCDHLKP-VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEA 563 (628)
Q Consensus 486 l~~v~lF~~l~~~~l~~l~~~l~~-~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fGe~ 563 (628)
+++.+.|..++++.++.|....+. +.|+||+.|+++||+++++|+|.+|.|+++..+ +|++.+ +..+.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 455555557999999999998864 679999999999999999999999999998754 566655 7888999999987
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHH
Q 006857 564 LLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 564 ~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~ 617 (628)
.++ .. .+..+++|+++++++.+++++|.+++.++|.+....++.
T Consensus 93 ~~~---~~-------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~ 136 (235)
T PRK11161 93 AIG---SG-------QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRL 136 (235)
T ss_pred ccc---CC-------CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHH
Confidence 542 11 124489999999999999999999999999976544433
No 16
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.29 E-value=5.4e-11 Score=116.62 Aligned_cols=118 Identities=20% Similarity=0.313 Sum_probs=98.5
Q ss_pred hccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEehhhh
Q 006857 487 MRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALL 565 (628)
Q Consensus 487 ~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l 565 (628)
...+.|..++.+....+......+.+++|++|+++||+++.+|+|.+|.++++... +|++.+ +..+++||+||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHH
Confidence 34566777788888888888999999999999999999999999999999997754 566665 789999999999998
Q ss_pred hhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHH
Q 006857 566 TWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQL 615 (628)
Q Consensus 566 ~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l 615 (628)
+... +++++++|+++|+++.+++++|.+++.+.|.+....+
T Consensus 81 ~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~ 121 (214)
T COG0664 81 LGGD---------PRSASAVALTDVEVLEIPRKDFLELLAESPKLALALL 121 (214)
T ss_pred hcCC---------CccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHH
Confidence 6211 3677999999999999999999998777777654433
No 17
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.26 E-value=5.7e-12 Score=132.17 Aligned_cols=127 Identities=24% Similarity=0.425 Sum_probs=107.9
Q ss_pred HHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCe
Q 006857 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF 559 (628)
Q Consensus 480 ~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~ 559 (628)
.-+.++|+.+|+|+++|++.+..+++.++...|..|++|++||+.++.+|+|.+|.|.+.....+.++...+..++.||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34568899999999999999999999999999999999999999999999999999999775544333333899999999
Q ss_pred EehhhhhhhcCCCCCCCCCCcccEEEEcce-EEEEEeeHHHHHHHHHHhHHHHHHHH
Q 006857 560 CGEALLTWALDPQSSSNRPLSTRTVQALTE-VEAFSLMADDLKSVASQFRRLHSKQL 615 (628)
Q Consensus 560 fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~-~ell~L~~~~f~~ll~~~p~l~~~~l 615 (628)
|||-+++ +...|++++.|..+ ++++.|+++.|..++...-++..+..
T Consensus 348 FGE~al~---------~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~ 395 (732)
T KOG0614|consen 348 FGERALL---------GEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDY 395 (732)
T ss_pred hhHHHhh---------ccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhc
Confidence 9999986 22347889999988 99999999999998877776654333
No 18
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.25 E-value=1e-11 Score=130.34 Aligned_cols=130 Identities=22% Similarity=0.374 Sum_probs=111.5
Q ss_pred HHHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecC
Q 006857 477 IKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKA 556 (628)
Q Consensus 477 i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~ 556 (628)
=..++..+.+++..+.++++.+.+.+++.+|.+..|.+|+.|++|||+++++|++.+|++.+.. +|+- +..+++
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~l----l~~m~~ 220 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGKL----LGKMGA 220 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCee----eeccCC
Confidence 3456678888899999999999999999999999999999999999999999999999999976 3432 899999
Q ss_pred CCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006857 557 GDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQ 621 (628)
Q Consensus 557 Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~r~ 621 (628)
|..|||.++++++. |+++|+|+++|.+++|+++.|+.++............+..|.
T Consensus 221 gtvFGELAILynct---------RtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrs 276 (732)
T KOG0614|consen 221 GTVFGELAILYNCT---------RTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRS 276 (732)
T ss_pred chhhhHHHHHhCCc---------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999986553 789999999999999999999999877655544454444443
No 19
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.18 E-value=1.9e-10 Score=125.08 Aligned_cols=112 Identities=20% Similarity=0.383 Sum_probs=96.0
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEeh
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (628)
.+.++++++|++++++.++.++..++.+.|++||+|+++||+++.+|+|.+|.|+++..+++.+.. +..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~--l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRP--EFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEE--EEEeCCCCEeeh
Confidence 456889999999999999999999999999999999999999999999999999997755433433 788999999997
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHh
Q 006857 563 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQF 607 (628)
Q Consensus 563 ~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~ 607 (628)
. + .. ..+..+++|.++|+++.|++++|..+....
T Consensus 85 ~-l----~~------~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~ 118 (413)
T PLN02868 85 G-L----SG------SVHSADVVAVSELTCLVLPHEHCHLLSPKS 118 (413)
T ss_pred h-h----CC------CCcccEEEECCCEEEEEEcHHHHhhhcccc
Confidence 5 2 11 225789999999999999999999876544
No 20
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.18 E-value=3.6e-12 Score=127.69 Aligned_cols=53 Identities=19% Similarity=0.417 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006857 361 FYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLE 413 (628)
Q Consensus 361 ~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~ 413 (628)
-.+||||++|||||||||..|.+.+.+++..+++|.|+.--|+-+..+.+-+.
T Consensus 395 PdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFn 447 (507)
T KOG1545|consen 395 PDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFN 447 (507)
T ss_pred cccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEeccc
Confidence 35899999999999999999999999999999999999988876655544443
No 21
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=6.7e-11 Score=119.42 Aligned_cols=107 Identities=17% Similarity=0.276 Sum_probs=96.5
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEeh
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (628)
.+.+++.-+|++++++.+..+.+.|.++.+++|+.|++||+.++.+|+|.+|.++++.. ++- +..+++|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~~----v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GTY----VTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--CeE----EeeeCCCCchhh
Confidence 56778888999999999999999999999999999999999999999999999999875 222 789999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHH
Q 006857 563 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 604 (628)
Q Consensus 563 ~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll 604 (628)
.++++ .++|.+|+.|.+++.+|.|++..|..++
T Consensus 195 lALmy---------n~PRaATv~a~t~~klWgldr~SFrrIi 227 (368)
T KOG1113|consen 195 LALMY---------NPPRAATVVAKSLKKLWGLDRTSFRRII 227 (368)
T ss_pred hHhhh---------CCCcccceeeccccceEEEeeceeEEEe
Confidence 99963 2457899999999999999999998854
No 22
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.14 E-value=4.3e-10 Score=120.03 Aligned_cols=115 Identities=20% Similarity=0.277 Sum_probs=102.6
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEeh
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (628)
.+++.++|.|+.++++.+.+|...++..+|.+||.|+..|.+.+++|+|.+|.|++...+|. + +..+..||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~---v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE---V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe---e--eeeeccCccccc
Confidence 56889999999999999999999999999999999999999999999999999999875554 2 799999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHH
Q 006857 563 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLH 611 (628)
Q Consensus 563 ~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~ 611 (628)
.+++....+. .++.|.+++.+|.|+++.|.++++++|.+.
T Consensus 81 ~~l~~~~~~~---------~~~~aeedsl~y~lp~s~F~ql~~~n~~f~ 120 (610)
T COG2905 81 SSLFTELNKQ---------RYMAAEEDSLCYLLPKSVFMQLMEENPEFA 120 (610)
T ss_pred hhhcccCCCc---------ceeEeeccceEEecCHHHHHHHHHhCcHHH
Confidence 9987444432 368888899999999999999999998854
No 23
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.11 E-value=1.1e-09 Score=109.58 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=87.0
Q ss_pred HHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCC
Q 006857 501 DAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPL 579 (628)
Q Consensus 501 ~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~ 579 (628)
..++...+.+.|++|++|+.+||+++++|+|.+|.|+++.. .+|++.+ +..+.+|++||+.. . .+
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~----~--------~~ 97 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES----G--------ST 97 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC----C--------Cc
Confidence 34566778899999999999999999999999999999764 4566655 78899999999642 1 12
Q ss_pred cccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHH
Q 006857 580 STRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 619 (628)
Q Consensus 580 r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~ 619 (628)
+.++++|+++|+++.+++++|.+++..+|.+....++...
T Consensus 98 ~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~ 137 (230)
T PRK09391 98 HRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTA 137 (230)
T ss_pred CCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHH
Confidence 4679999999999999999999999999998766555443
No 24
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.06 E-value=1.4e-09 Score=105.44 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=78.0
Q ss_pred CCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEE
Q 006857 515 KSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAF 593 (628)
Q Consensus 515 ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell 593 (628)
|+.|+++||+++++|+|.+|.|+++.. .+|++.+ +..+++|++||+.+++. ..+ .++..+++|.++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~~---~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLIT---GHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeecc---CCC----CccceEEEEecceEEE
Confidence 789999999999999999999999764 4567755 89999999999987752 111 1134679999999999
Q ss_pred EeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 594 SLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 594 ~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
.+++++|++++.++|++....++..
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l 96 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGL 96 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHH
Confidence 9999999999999999876555544
No 25
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.99 E-value=5.1e-09 Score=102.41 Aligned_cols=83 Identities=20% Similarity=0.238 Sum_probs=69.8
Q ss_pred ccceEEeCCCCeEeccCC--CcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCccc
Q 006857 506 HLKPVLYTEKSFIVREGD--PVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTR 582 (628)
Q Consensus 506 ~l~~~~~~~ge~I~~eGd--~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~ 582 (628)
.++...|++|++|+++|| +++.+|+|++|.|+++.. .+|++.+ +..+.|||+||+..++ ..+ +++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~~--~~~--------~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEALA--GAE--------RAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHhc--CCC--------CCc
Confidence 467888999999999999 779999999999999774 4677766 8999999999997543 122 466
Q ss_pred EEEEcceEEEEEeeHHHH
Q 006857 583 TVQALTEVEAFSLMADDL 600 (628)
Q Consensus 583 tv~A~t~~ell~L~~~~f 600 (628)
+++|.++|+++.+++++|
T Consensus 73 ~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM 90 (202)
T ss_pred eEEEcCceEEEEEEHHHc
Confidence 899999999999998876
No 26
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.96 E-value=5.7e-09 Score=86.01 Aligned_cols=56 Identities=18% Similarity=0.368 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006857 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLE 413 (628)
Q Consensus 358 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~ 413 (628)
..|..++||+..|+||+||||+.|.+..+++++++.+++|+.++++.++.+.+.+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999999999999999999998875
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.93 E-value=3.1e-09 Score=107.59 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=106.6
Q ss_pred HHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCC
Q 006857 478 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAG 557 (628)
Q Consensus 478 ~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~G 557 (628)
++.|+.+.++.+|+++.+.......+++.+.++.|++|+.|+.+|++++.+|+|.+|.|.+....+| + .+ .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~---v-~v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG---V-EV-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC---e-EE-Eechh
Confidence 3567899999999999999999999999999999999999999999999999999999999665544 2 25 99999
Q ss_pred CeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHH
Q 006857 558 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 612 (628)
Q Consensus 558 d~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~ 612 (628)
|+|||.+++.. .+|.+||.|.++..+..++++.|+.++.-..+++.
T Consensus 309 dyfge~al~~~---------~pr~Atv~a~~~~kc~~~dk~~ferllgpc~dilk 354 (368)
T KOG1113|consen 309 DYFGELALLKN---------LPRAATVVAKGRLKCAKLDKPRFERLLGPCQDILK 354 (368)
T ss_pred hhcchHHHHhh---------chhhceeeccCCceeeeeChHHHHHHhhHHHHHHH
Confidence 99999998632 23678999999999999999999999987776663
No 28
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.86 E-value=4.1e-10 Score=113.98 Aligned_cols=182 Identities=18% Similarity=0.287 Sum_probs=113.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhheeeeeecCccccCCCeeecCHHHHHHHhhhh-hhHHHHHhhcchhHHHHhhhccCC
Q 006857 132 LEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPLPQLVVLIIVPAV 210 (628)
Q Consensus 132 ~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~ 210 (628)
....++.+++..=++|..+.++++..| |+ +-|++++ -=+||+++++|+..-+ ....+.
T Consensus 225 y~~aFFclDTACVmIFT~EYlLRL~aA---Ps----------------R~rF~RSvMSiIDVvAIlPYYigL--v~t~N~ 283 (632)
T KOG4390|consen 225 YPVAFFCLDTACVMIFTGEYLLRLFAA---PS----------------RYRFLRSVMSIIDVVAILPYYIGL--VMTDNE 283 (632)
T ss_pred cceeeEEecceeEEEeeHHHHHHHHcC---ch----------------HHHHHHHHHHHHHHhhhhhhheEE--EecCCc
Confidence 356777888888888999999998654 43 4678888 5689999999996322 233344
Q ss_pred CCChhhhhhhhhHHHHHHhhhhHHHhhhccccccc--ccccceehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchh
Q 006857 211 KGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVK--RTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSC 288 (628)
Q Consensus 211 ~~~~~~~~~~~lr~~~~~q~l~Rl~ri~~l~~~l~--~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~~~~~~~~~~ 288 (628)
+.+..+.+++++| .+||+++.+.-. |..|+-.++-..-.-+.++....+.-++|.+.|+.-.-
T Consensus 284 DVSGaFVTLRVFR----------VFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg----- 348 (632)
T KOG4390|consen 284 DVSGAFVTLRVFR----------VFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKG----- 348 (632)
T ss_pred cccceeEEEEeee----------eeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc-----
Confidence 5555555555443 333333332211 23333222211111233333334555666666653210
Q ss_pred HHHHhhhcCCCCCCccccccCCCCCCccccccccCCCCCCcccccccccccchhHhhhhcccccCCCchhHHHHHHHHHH
Q 006857 289 WRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGL 368 (628)
Q Consensus 289 w~~~~~~~~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~~~~~giy~~~~~~~~~~~~~~~~~Y~~slyw~l 368 (628)
.+.+.+..--.+||+.+
T Consensus 349 ---------------------------------------------------------------~~at~FTsIPaaFWYTI 365 (632)
T KOG4390|consen 349 ---------------------------------------------------------------SSATKFTSIPAAFWYTI 365 (632)
T ss_pred ---------------------------------------------------------------ccccccccCcHhHhhhe
Confidence 01122223346899999
Q ss_pred HHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 006857 369 RNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLI----GNMQKYL 412 (628)
Q Consensus 369 ~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~li----g~~~~~l 412 (628)
+||||+||||.+|.+....+|..++.+.|+.+-|+-+ +|++.+.
T Consensus 366 VTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 366 VTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred eeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 9999999999999999999999999999999888744 5555543
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.56 E-value=5.3e-08 Score=103.12 Aligned_cols=130 Identities=16% Similarity=0.266 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 006857 357 PKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHR 436 (628)
Q Consensus 357 ~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~ 436 (628)
.-.|..|.|+-++||+||||||+...+...++|.+|..+.|+.+||--+..+..++.+..+-.-|+...- =-+|-
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-----gkkhi 360 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-----GKKHI 360 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-----CCeeE
Confidence 3468899999999999999999999999999999999999999999999999999987655444433210 00111
Q ss_pred CCCH-hHHHHHHHHHHHHHHhhc-CCC-HHHHhhcCChhHHHHHHHHHhHHHhhccccccC
Q 006857 437 MLPE-NLRDRIRRYEQYKWQETR-GVE-EEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEK 494 (628)
Q Consensus 437 ~lp~-~L~~rV~~y~~~~w~~~~-~~~-e~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~ 494 (628)
-+-- ---+.|..|.+-.-.+.+ .+| |--+|+..||+|.-| .+++.-..++.+|++
T Consensus 361 vvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 361 VVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred EEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 1111 112334444443333322 333 346678888888644 344555667777764
No 30
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.08 E-value=5.5e-06 Score=92.71 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=92.0
Q ss_pred HHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCC
Q 006857 499 LLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNR 577 (628)
Q Consensus 499 ~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~ 577 (628)
++..+-..+....+.+|+.+++|||..|++|+|++|+++.... .+|+..+ +..++.||.+|+.+.+.+
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~lt~--------- 568 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEMLTK--------- 568 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHHhhc---------
Confidence 4455556678889999999999999999999999999998664 4555445 799999999999988532
Q ss_pred CCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006857 578 PLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQ 621 (628)
Q Consensus 578 ~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~r~ 621 (628)
.+|..|+.|+-++|+..||..-|..+..+||....+..+...++
T Consensus 569 ~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~ 612 (1158)
T KOG2968|consen 569 QPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEK 612 (1158)
T ss_pred CCccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 23667999999999999999999999999999886555554444
No 31
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.08 E-value=1.8e-06 Score=69.64 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=33.3
Q ss_pred cceeCCCChhHHHHHHHHHHHHHHHHhhhhhcccc
Q 006857 82 KRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYM 116 (628)
Q Consensus 82 ~~ii~P~s~~~~~W~~~~~~~~~~~~~~~P~~~~~ 116 (628)
.+||||.|+++..||.+++++++++++++|+.++|
T Consensus 36 ~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF 70 (77)
T PF08412_consen 36 PWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISF 70 (77)
T ss_pred CeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheE
Confidence 78999999999999999999999999999999765
No 32
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.92 E-value=2.3e-05 Score=84.13 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006857 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLE 413 (628)
Q Consensus 358 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~ 413 (628)
..+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+.
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i 222 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVI 222 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999988876543
No 33
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.92 E-value=0.0002 Score=75.39 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006857 356 FPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLE 413 (628)
Q Consensus 356 ~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~ 413 (628)
....|..++|....|..++||||++|.|...+..+++..++|..+.|.+++-++--+.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe 341 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE 341 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 4467889999999999999999999999999999999999999999999998886664
No 34
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.75 E-value=0.0001 Score=77.30 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHhhccCCCc--cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006857 358 KKFFYCFWWGLRNLSSLGQNL--KTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 415 (628)
Q Consensus 358 ~~Y~~slyw~l~tlttvGygd--~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~ 415 (628)
..+..+|++++.|+||+|||. ++|....-.++.++-+++|+++.|+++|.+-+=++.-
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 457889999999999999998 6777788888889999999999999999988777643
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.60 E-value=0.00037 Score=78.58 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=88.5
Q ss_pred HHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcc
Q 006857 503 MCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLST 581 (628)
Q Consensus 503 l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~ 581 (628)
++.+++...+..|++|++.|++.+.+|.+.+|.+++...+ +|++.. +..+.+|+.|-....+. +-.+......++
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSiL--d~l~~~ps~~~~ 186 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSIL--DSLPGFPSLSRT 186 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHHH--HhccCCCcccce
Confidence 3477788889999999999999999999999999997655 577766 89999998777654332 222222234577
Q ss_pred cEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 582 RTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 582 ~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
..++|.++|.+..++.+.|..+...+|+-..+.+|-.
T Consensus 187 i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvv 223 (1158)
T KOG2968|consen 187 IAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVV 223 (1158)
T ss_pred eeeeeecCceEEEeccchhhhhhccChHHHHHHHHHH
Confidence 8899999999999999999999999999665554433
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00033 Score=76.24 Aligned_cols=59 Identities=15% Similarity=0.385 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006857 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVR 418 (628)
Q Consensus 360 Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~ 418 (628)
+..|+|++.+++||+|||+++|.+...++++|+..++|+-++..++++++..+...-.+
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~ 174 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRK 174 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999865433
No 37
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.12 E-value=0.021 Score=52.03 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=87.5
Q ss_pred CCcHHHHHHHHhc-cceEEeCCCCeEeccC-CCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCC
Q 006857 494 KMDDQLLDAMCDH-LKPVLYTEKSFIVREG-DPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDP 571 (628)
Q Consensus 494 ~l~~~~l~~l~~~-l~~~~~~~ge~I~~eG-d~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~ 571 (628)
+++......|+.+ .+...+.+|+.-..|| .+.|.+-++++|++++... |+. +..+.|-+|....+... ..+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~f----LH~I~p~qFlDSPEW~s-~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GRF----LHYIYPYQFLDSPEWES-LRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CEe----eEeecccccccChhhhc-ccc
Confidence 4688888998888 6667799999988888 4567999999999998653 432 78888888887776431 111
Q ss_pred CCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHHH
Q 006857 572 QSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFR 620 (628)
Q Consensus 572 ~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~r 620 (628)
+....-..|+.|.++|..+..+++.+..++...|-+. ........
T Consensus 87 ---s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~-~vF~~liG 131 (153)
T PF04831_consen 87 ---SEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLA-AVFSNLIG 131 (153)
T ss_pred ---CCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHH-HHHHHHHH
Confidence 1223457899999999999999999999999988655 33333333
No 38
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.72 E-value=0.055 Score=52.55 Aligned_cols=97 Identities=9% Similarity=-0.011 Sum_probs=73.5
Q ss_pred HHHHHHHhccceEEeCCCCeE-eccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCC
Q 006857 498 QLLDAMCDHLKPVLYTEKSFI-VREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSN 576 (628)
Q Consensus 498 ~~l~~l~~~l~~~~~~~ge~I-~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~ 576 (628)
...+.+....++..+++|..+ ..+....+.+++|.+|.|.+. ..++- .+.+..+..+||-...+ .+.
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~l----l~~t~~aP~IlGl~~~~---~~~---- 80 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REENV----LIGITQAPYIMGLADGL---MKN---- 80 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCCe----EEEeccCCeEeeccccc---CCC----
Confidence 355677778888999999997 544444578999999999994 33332 26788899999976542 221
Q ss_pred CCCcccEEEEcceEEEEEeeHHHHHHHHHHhH
Q 006857 577 RPLSTRTVQALTEVEAFSLMADDLKSVASQFR 608 (628)
Q Consensus 577 ~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p 608 (628)
...+.++|.++|+++.++.++|.++++++.
T Consensus 81 --~~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 81 --DIPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred --CceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 124689999999999999999999998754
No 39
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.53 E-value=0.0063 Score=66.64 Aligned_cols=113 Identities=13% Similarity=0.274 Sum_probs=89.0
Q ss_pred hHHHhhccccccCCcHHHHHHHHhccceEEe-CCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeE
Q 006857 482 CWDLLMRVPMFEKMDDQLLDAMCDHLKPVLY-TEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 560 (628)
Q Consensus 482 ~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~-~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~f 560 (628)
..+++.+.|-|.+|+-...++||..|..... .+|.+|+..|+..|..++|+.|+|++...+|.+ ..+.-|+.|
T Consensus 279 LLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGnSF 352 (1283)
T KOG3542|consen 279 LLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGNSF 352 (1283)
T ss_pred HHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeeccccc
Confidence 3678889999999999999999998877664 489999999999999999999999999888764 567789999
Q ss_pred ehhhhhhhcCCCCCCCCCCcccEEE-EcceEEEEEeeHHHHHHHHHHhHH
Q 006857 561 GEALLTWALDPQSSSNRPLSTRTVQ-ALTEVEAFSLMADDLKSVASQFRR 609 (628)
Q Consensus 561 Ge~~l~~~l~~~~~~~~~~r~~tv~-A~t~~ell~L~~~~f~~ll~~~p~ 609 (628)
|...- .+... ..-.++ -+.+|+...+...|+-.++.+.-+
T Consensus 353 G~~PT---~dkqy------m~G~mRTkVDDCqFVciaqqDycrIln~vek 393 (1283)
T KOG3542|consen 353 GAEPT---PDKQY------MIGEMRTKVDDCQFVCIAQQDYCRILNTVEK 393 (1283)
T ss_pred CCCCC---cchhh------hhhhhheecccceEEEeehhhHHHHHHHHHh
Confidence 96642 11110 011122 468899999999999999876543
No 40
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.38 E-value=0.097 Score=60.11 Aligned_cols=88 Identities=19% Similarity=0.267 Sum_probs=52.0
Q ss_pred Cc-cceeCCCChhHHHHHHH---------HHHHHHHHHhhhhhccccceecCCccccccCccchhhhhHHHHHHHHHHHH
Q 006857 80 SE-KRILDPQGPFLQWWNKI---------FVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYIL 149 (628)
Q Consensus 80 ~~-~~ii~P~s~~~~~W~~~---------~~~~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~i 149 (628)
.+ ++++.|+++|+..-..+ +++.++++.+++.++ -|.++.. ..--+...+-+.++-++|++
T Consensus 1101 ~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale--rp~i~~~-------s~EriFltlsnyIFtaIfV~ 1171 (1956)
T KOG2302|consen 1101 LWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE--RPAIVEG-------STERIFLTLSNYIFTAIFVV 1171 (1956)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc--ccccccC-------cceEEEEEecchHHHHHHHH
Confidence 44 78999999998765443 344444444444443 1222111 11123444556899999999
Q ss_pred HHHhhhe-eeeeecCccccCCCeeecCHHHHHHHhhhh-hhHHHHH
Q 006857 150 RIIFQFR-TGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDIL 193 (628)
Q Consensus 150 Di~l~f~-t~y~~~~~~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDll 193 (628)
++.++-. .|.+- || .-|+++ |=.+|.+
T Consensus 1172 Em~lKVVALGl~f--------ge---------~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1172 EMTLKVVALGLYF--------GE---------QAYLRSSWNVLDGF 1200 (1956)
T ss_pred HHHHHHHhhhhcc--------ch---------HHHHHHHHHhhhHH
Confidence 9988865 45432 32 468887 8777743
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.17 E-value=0.004 Score=63.13 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHH
Q 006857 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLI 405 (628)
Q Consensus 359 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~li 405 (628)
++.-|||++.+.+||+|||-.+|.|.+.++|+|+..++|+-+.-..+
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmF 126 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMF 126 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHH
Confidence 67789999999999999999999999999999999999975554433
No 42
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.79 E-value=0.11 Score=54.35 Aligned_cols=61 Identities=18% Similarity=0.416 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhccCCCccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006857 359 KFFYCFWWGLRNLSSLGQNLKTST--FVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRL 419 (628)
Q Consensus 359 ~Y~~slyw~l~tlttvGygd~~~~--~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~ 419 (628)
-+..||-+++-|=+|+|||--.++ -+.-++.-++-+|+|+++-|+++|.+-.-+..-.+|.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRA 174 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRA 174 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 345678889999999999965543 3555666677789999999999998877666544443
No 43
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.71 E-value=0.21 Score=51.07 Aligned_cols=56 Identities=16% Similarity=0.312 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhccCCCccccCch-------hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006857 360 FFYCFWWGLRNLSSLGQNLKTSTFV-------GE-VFFAIFISISGLVLFALLIGNMQKYLEST 415 (628)
Q Consensus 360 Y~~slyw~l~tlttvGygd~~~~~~-------~E-~~~~i~~~i~G~~lfa~lig~~~~~l~~~ 415 (628)
|+.|+|+-..|+||+|+||.++.-. .+ ..++.+.+++|+.+++-+++-+.--+..+
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~ 250 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTM 250 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778899999999999999987533 23 35677778889888887776665555433
No 44
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=94.57 E-value=0.027 Score=60.47 Aligned_cols=40 Identities=13% Similarity=0.259 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHH
Q 006857 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLV 399 (628)
Q Consensus 360 Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~ 399 (628)
.+.|+|+.+.|.+||||||..|......+..++++-+.++
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~ 257 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALG 257 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHh
Confidence 3468899999999999999999987766655444444333
No 45
>PLN03223 Polycystin cation channel protein; Provisional
Probab=94.27 E-value=3.8 Score=49.71 Aligned_cols=67 Identities=6% Similarity=-0.120 Sum_probs=36.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhhhhccccceecCCccccccCccchhhhhHHHHHHHHHHHHHHHhhhe
Q 006857 86 DPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFR 156 (628)
Q Consensus 86 ~P~s~~~~~W~~~~~~~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~ 156 (628)
.+.+.+...-+.++++..+|.++---..+.---......+ ......|.++++++-++-+.=|++-|.
T Consensus 1169 tt~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~l----aYFKSfWNwLEIl~IlLS~AAIvLYFv 1235 (1634)
T PLN03223 1169 TYEDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYL----AYFLSGWNYVDFASIGLHLATIMMWFV 1235 (1634)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh----hHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777766666554433210000000001 113457888888887777777776553
No 46
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=91.34 E-value=0.045 Score=59.45 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhhccCCCccccCchhhH--------HHHHHHHHHHHHHHHHHHH
Q 006857 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEV--------FFAIFISISGLVLFALLIG 406 (628)
Q Consensus 358 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~--------~~~i~~~i~G~~lfa~lig 406 (628)
--|+.|+|+++.++||+|+||++|.+.... .+..++.++|...++...-
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhh
Confidence 346789999999999999999999997765 6888888889888887763
No 47
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=90.29 E-value=0.42 Score=53.00 Aligned_cols=92 Identities=15% Similarity=0.202 Sum_probs=72.0
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEeh
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (628)
...|.+...|+++-..-+.++|...+...++...++++.|+.+...|++++|.|-+.. ...-|-..||.
T Consensus 36 ~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g-----------qi~mp~~~fgk 104 (1283)
T KOG3542|consen 36 YEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG-----------QIYMPYGCFGK 104 (1283)
T ss_pred HHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----------ceecCcccccc
Confidence 3467778889999999999999999999999999999999999999999999986531 23344446665
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeH
Q 006857 563 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMA 597 (628)
Q Consensus 563 ~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~ 597 (628)
.. ...|+.++-.+.++|..+++.
T Consensus 105 r~------------g~~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 105 RT------------GQNRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred cc------------ccccccceeeecccceeeeec
Confidence 42 112677888888888888843
No 48
>COG4709 Predicted membrane protein [Function unknown]
Probab=84.61 E-value=4.7 Score=38.24 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHh--hcCCCHHHHhhcC--ChhHHHHHHHHHhHHHhhccccccCCcHHHH
Q 006857 426 RQDAEQWMSHRMLPENLRDRIRRYEQYKWQE--TRGVEEEGLLRNL--PKDLRRDIKRHLCWDLLMRVPMFEKMDDQLL 500 (628)
Q Consensus 426 ~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~--~~~~~e~~ll~~L--p~~Lr~~i~~~l~~~~l~~v~lF~~l~~~~l 500 (628)
++++++++ +.+|++.+..+..||+-++.+ ..|.+|+++..+| |+++-+|+..+.-.+-.+.-|-+++.+...+
T Consensus 7 L~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~aii 83 (195)
T COG4709 7 LNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAII 83 (195)
T ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHHH
Confidence 55677777 479999999999999877774 3588899999988 8889888887776666666666666655443
No 49
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.02 E-value=16 Score=46.19 Aligned_cols=115 Identities=12% Similarity=0.181 Sum_probs=62.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhheeeeeecCccccCCCeeecCHHHHHHHhhhh-hhHHHHHhhcchhHHHHhhhccCC
Q 006857 132 LEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPLPQLVVLIIVPAV 210 (628)
Q Consensus 132 ~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~ 210 (628)
....+...+.+.-.+|.+.+++..-. .|... |+++ |.++|++-++-.-.-..+ ..
T Consensus 870 ~~~~L~y~D~~Ft~iFt~Em~lK~ia-----------~Gf~~---------y~rn~w~~lDf~Vv~vslisl~~--~~-- 925 (1592)
T KOG2301|consen 870 INGILEYADYIFTYIFTFEMLLKWIA-----------YGFFF---------YFRNAWNWLDFVVVIVSLISLIA--SL-- 925 (1592)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHH---------HHhhHHhhhhHHHhhhHHHHHHH--hh--
Confidence 35577788999999999999998742 23221 9998 999998766544221111 11
Q ss_pred CCChhhhhhhhhHHHHHHhhhhHHHhhhcccccccccccceehHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006857 211 KGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSI 282 (628)
Q Consensus 211 ~~~~~~~~~~~lr~~~~~q~l~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~~~~ 282 (628)
. ...+.+.||.+| .+|.+|.+.....++.. ..+..+++..++..+++++++=+++-.+|+
T Consensus 926 ~---~~~~ik~lr~lR----aLRPLR~i~r~~~mr~V-----v~~l~~a~~~I~nv~lV~li~~fiFai~gv 985 (1592)
T KOG2301|consen 926 K---ILSLIKSLRILR----ALRPLRALSRFPGMRVV-----VLALFGGLPEIFNVLLVCLIFWFIFAIMGV 985 (1592)
T ss_pred h---hhhHHHHHHHHH----HHHHHHHHHHccccchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122233333221 33444443333222211 124556666666666666665555544443
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=80.34 E-value=8.9 Score=36.63 Aligned_cols=57 Identities=26% Similarity=0.496 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHh--hcCCCHHHHhhcC--ChhHHHHHHHHHh
Q 006857 424 VKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQE--TRGVEEEGLLRNL--PKDLRRDIKRHLC 482 (628)
Q Consensus 424 ~~~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~--~~~~~e~~ll~~L--p~~Lr~~i~~~l~ 482 (628)
+-+++++++++ ++|++-++.+.+||+-+..+ .+|.+|+++.++| |+++-+++..+..
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 34667888886 59999999999999988874 4578899999997 7888888776543
No 51
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=75.17 E-value=6.1 Score=30.75 Aligned_cols=45 Identities=31% Similarity=0.333 Sum_probs=33.2
Q ss_pred EEeCCCCeEeccCCCcC-eEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 510 VLYTEKSFIVREGDPVE-EMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 510 ~~~~~ge~I~~eGd~~~-~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
..++||+..-..-.+.. ++++|++|++.+. .+ ++ ...+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~-~~-----~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD-GE-----RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET-TE-----EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec-cE-----EeEccCCEEEE
Confidence 45788887665555566 9999999999887 33 33 46889998763
No 52
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=67.17 E-value=2.1e+02 Score=34.29 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=31.7
Q ss_pred cCCCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHHHHHHHHHhHH
Q 006857 436 RMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484 (628)
Q Consensus 436 ~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~ 484 (628)
.+||+.|+..|..+..... +..-.+++.++++...++...+...
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~~~~ 400 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKMKAE 400 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhhhee
Confidence 4789999999988765432 3334678889998888877766443
No 53
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=64.57 E-value=32 Score=32.13 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=31.7
Q ss_pred CCCCeE-eccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 513 TEKSFI-VREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 513 ~~ge~I-~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
.||+.- ++..+ .++++++++|.+.+-..++|+.+ ...+++||+|=
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl 81 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFL 81 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEE
Confidence 444443 55534 68999999999999666655422 47899999873
No 54
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=63.12 E-value=49 Score=29.58 Aligned_cols=70 Identities=7% Similarity=0.019 Sum_probs=43.4
Q ss_pred ceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEc
Q 006857 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQAL 587 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~ 587 (628)
....++||+.+-..-....++++|++|++.+...++++ ...+.+||.+--.+- .+..+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~--------------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKH--------------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCC--------------CcEEEEcC
Confidence 33567888755332222247999999999886332244 478999999863321 13355555
Q ss_pred ceEEEEEee
Q 006857 588 TEVEAFSLM 596 (628)
Q Consensus 588 t~~ell~L~ 596 (628)
++++++.+-
T Consensus 99 e~~~~l~v~ 107 (125)
T PRK13290 99 EDMRLVCVF 107 (125)
T ss_pred CCEEEEEEE
Confidence 777776653
No 55
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=61.58 E-value=3.2e+02 Score=32.04 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=53.9
Q ss_pred hccCCCccccCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHhcCCCHhHHH
Q 006857 372 SSLGQNLKTSTF------VGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRL-EEMRVKRQDAEQWMSHRMLPENLRD 444 (628)
Q Consensus 372 ttvGygd~~~~~------~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~-~~~~~~~~~~~~~m~~~~lp~~L~~ 444 (628)
.|+|+||..... ..-.+|.++..++.+.++-.+|+-|+.-........ ++++.+. ...-.|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~-A~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQW-AATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHH-HHHHHHHHhcCCHHHHH
Confidence 689999886543 345667777778888888889999998887766555 5666544 33456778999999988
Q ss_pred H
Q 006857 445 R 445 (628)
Q Consensus 445 r 445 (628)
|
T Consensus 680 ~ 680 (782)
T KOG3676|consen 680 R 680 (782)
T ss_pred H
Confidence 7
No 56
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=60.19 E-value=15 Score=29.46 Aligned_cols=42 Identities=31% Similarity=0.443 Sum_probs=28.9
Q ss_pred eCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 512 YTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 512 ~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
..||..-..- +.++..+|++|.|.+... +|. ...+++||.|=
T Consensus 14 ~~pg~~~~~~--~~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPY--PEDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEE--SSEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred ECCceeEeeC--CCCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 3455543332 228889999999988765 444 36899999874
No 57
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=56.78 E-value=10 Score=34.40 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=50.3
Q ss_pred chhHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 006857 356 FPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSH 435 (628)
Q Consensus 356 ~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~ 435 (628)
.......++|+.+.+++. +-++..|.....+++.+++.++++++.+...|++++++.... ....++.+++..++
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHHC
Confidence 345667788888877776 435788999999999999999999999999999999997442 22224445554444
Q ss_pred c
Q 006857 436 R 436 (628)
Q Consensus 436 ~ 436 (628)
.
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 58
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=56.78 E-value=18 Score=31.50 Aligned_cols=45 Identities=22% Similarity=0.499 Sum_probs=34.1
Q ss_pred cCCCHhHHHHHHHHHHHHHHhh----------cCCCHHHHhhcCChhHHHHHHHH
Q 006857 436 RMLPENLRDRIRRYEQYKWQET----------RGVEEEGLLRNLPKDLRRDIKRH 480 (628)
Q Consensus 436 ~~lp~~L~~rV~~y~~~~w~~~----------~~~~e~~ll~~Lp~~Lr~~i~~~ 480 (628)
.-||+++|.-|..++.-.-... ...|...++..||++||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 3589999999999877653321 23456799999999999998654
No 59
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=52.21 E-value=19 Score=40.01 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Q 006857 362 YCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRML 438 (628)
Q Consensus 362 ~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~l 438 (628)
.|+|+++.....-| -|+.|.....++..-++-++.+++-+-..+|++..+. .|.|..-++.++..-++..+
T Consensus 598 NsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQteI 668 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTEI 668 (897)
T ss_pred HHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhccee
Confidence 59999999998877 3999999999999999988888888888888888875 44555555566665555543
No 60
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=51.96 E-value=2e+02 Score=31.85 Aligned_cols=158 Identities=16% Similarity=0.322 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhhccCCCc-----cc-c---C-----chhhHHHHHHHHHHH-----------------HHHHHHHHHH
Q 006857 359 KFFYCFWWGLRNLSSLGQNL-----KT-S---T-----FVGEVFFAIFISISG-----------------LVLFALLIGN 407 (628)
Q Consensus 359 ~Y~~slyw~l~tlttvGygd-----~~-~---~-----~~~E~~~~i~~~i~G-----------------~~lfa~lig~ 407 (628)
-+-.|+|+.+.---+.|--+ +. | + -.-|++.++-+.-+. ..++-+++|-
T Consensus 142 HWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGv 221 (536)
T KOG0500|consen 142 HWNACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGV 221 (536)
T ss_pred HHhhHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHH
Confidence 34578898887643333211 11 1 1 345677666655443 4566677775
Q ss_pred --HHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHHHHHHHHH----
Q 006857 408 --MQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHL---- 481 (628)
Q Consensus 408 --~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l---- 481 (628)
+++++.+...-...++..+.+.++-| .-|+.|++|+ ++|+.|+..+..-.
T Consensus 222 liFAtIvG~VGsmVtnmna~r~EFq~~m----------DGiK~YM~~R--------------kV~~~lq~rVikwfdYlw 277 (536)
T KOG0500|consen 222 LIFATIVGNVGSMVTNMNAARTEFQAKM----------DGIKQYMRYR--------------KVPKALQTRVIKWFDYLW 277 (536)
T ss_pred HHHhhhhccHhHHHHhhhHHHHHHHHHH----------HHHHHHHHHh--------------cccHHHHHHHHHHHHHHH
Confidence 46788877777778888777776655 6688899886 67888887765431
Q ss_pred -hHHHhhccccccCCcHHHHHHHHhccceEEeCC-------------------CCeEeccCCCcCeEEEEEeeEEEE--E
Q 006857 482 -CWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTE-------------------KSFIVREGDPVEEMLFVMRGNLVS--T 539 (628)
Q Consensus 482 -~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~-------------------ge~I~~eGd~~~~lyfI~~G~V~v--~ 539 (628)
+......-...+.+|+....+|+...+...+++ ...++.+|| |+..+|.+-- +
T Consensus 278 a~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgD-----yICrKGdvgkEMy 352 (536)
T KOG0500|consen 278 AHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGD-----YICRKGDVGKEMY 352 (536)
T ss_pred hccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCC-----eEEecCcccceEE
Confidence 123334445566788888888777665544332 345777777 7888998743 3
Q ss_pred EecCCe
Q 006857 540 TTYGGR 545 (628)
Q Consensus 540 ~~~~g~ 545 (628)
.-..|+
T Consensus 353 IVk~G~ 358 (536)
T KOG0500|consen 353 IVKEGK 358 (536)
T ss_pred EEEccE
Confidence 344444
No 61
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=50.89 E-value=65 Score=31.37 Aligned_cols=58 Identities=22% Similarity=0.416 Sum_probs=39.6
Q ss_pred cCChhHHHHHHHHHhHHHhhccccc-cCCcHHHHHHHHhccceEE--eCCCCeEeccCCCcC
Q 006857 468 NLPKDLRRDIKRHLCWDLLMRVPMF-EKMDDQLLDAMCDHLKPVL--YTEKSFIVREGDPVE 526 (628)
Q Consensus 468 ~Lp~~Lr~~i~~~l~~~~l~~v~lF-~~l~~~~l~~l~~~l~~~~--~~~ge~I~~eGd~~~ 526 (628)
.+|.. .+.+...+...++.-.-.| ...++...++..+...+.. +.+||.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 45555 3334444444444333334 4567788888999999999 999999999999865
No 62
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=50.46 E-value=46 Score=31.61 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=33.6
Q ss_pred eEEe-CCCC-eEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 509 PVLY-TEKS-FIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 509 ~~~~-~~ge-~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
...+ .||+ .-++- ++.++++++++|.+.+...++|+.+ ...+.+||+|=
T Consensus 37 VmvvgGpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl 87 (177)
T PRK13264 37 VMVVGGPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFL 87 (177)
T ss_pred EEEEccCCccccccc-CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEE
Confidence 3344 5663 33344 5678999999999998766665422 46899999873
No 63
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=49.82 E-value=70 Score=24.34 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q 006857 420 EEMRVKRQDAEQWMS 434 (628)
Q Consensus 420 ~~~~~~~~~~~~~m~ 434 (628)
.++++|++.+-+.+.
T Consensus 42 ~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 42 DSMEQKLDRIIELLE 56 (58)
T ss_pred hHHHHHHHHHHHHHc
Confidence 368888888877654
No 64
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=46.11 E-value=68 Score=29.22 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=37.1
Q ss_pred cceEEeCCCCeEeccCCC-cCeEEEEEeeEEEEEEecC-CeeeEEEEEEecCCCeEeh
Q 006857 507 LKPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYG-GRTGFFNAVYLKAGDFCGE 562 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~V~v~~~~~-g~~~~~~~~~l~~Gd~fGe 562 (628)
+....+.||...-..-.+ .+++++|++|+..+...+. +++.. ...+++||.+=.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEEE
Confidence 445567888876554433 5789999999999866432 33333 578999998753
No 65
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=42.49 E-value=1.4e+02 Score=32.14 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006857 357 PKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 415 (628)
Q Consensus 357 ~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~ 415 (628)
.--|+.+|-+++..+.+++-++....-..-..+++++.++++++|-+.|..++..++-.
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~ 156 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVS 156 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 44677788888888888876665322233388888999999999999999998888743
No 66
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=40.74 E-value=73 Score=28.39 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=34.9
Q ss_pred ccceEEeCCCCeE-eccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeE
Q 006857 506 HLKPVLYTEKSFI-VREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 560 (628)
Q Consensus 506 ~l~~~~~~~ge~I-~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~f 560 (628)
......+++|+-+ .+--...++.|+|++|...+... ++ ...+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 3556668888885 44445578999999999988664 33 3678888876
No 67
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=40.46 E-value=73 Score=28.32 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=39.7
Q ss_pred cceEEeCCCCeEeccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehh
Q 006857 507 LKPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEA 563 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 563 (628)
+....+.||+.+-.--.+ .+...++++|++++... |+ ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEEC
Confidence 345668999999877776 77999999999998765 33 4689999998755
No 68
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.98 E-value=1.9e+02 Score=33.90 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=35.2
Q ss_pred hcCChhHHHHHHHHHhHHHhh-----ccccccCCcHHHHHHHHhccce
Q 006857 467 RNLPKDLRRDIKRHLCWDLLM-----RVPMFEKMDDQLLDAMCDHLKP 509 (628)
Q Consensus 467 ~~Lp~~Lr~~i~~~l~~~~l~-----~v~lF~~l~~~~l~~l~~~l~~ 509 (628)
++||++||+.|..+....... ...+++++|++...+|+.++-.
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~ 418 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCL 418 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhH
Confidence 479999999999988776644 4577899999999999888743
No 69
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=34.09 E-value=1.1e+03 Score=29.86 Aligned_cols=56 Identities=14% Similarity=0.299 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHhcCCCHhH
Q 006857 387 VFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEM--RVKRQDAEQWMSHRMLPENL 442 (628)
Q Consensus 387 ~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~--~~~~~~~~~~m~~~~lp~~L 442 (628)
.+.++++.+..+++.-++|+.+....+.......++ -++.+.+++|=.+--||+.+
T Consensus 1017 lLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iWkFQRY~limeyh~rP~LPPPf 1074 (1381)
T KOG3614|consen 1017 LLLVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIWKFQRYSLIMEYHSRPALPPPF 1074 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCc
Confidence 345555556666666677766666665443333221 24555667776666666654
No 70
>PHA02909 hypothetical protein; Provisional
Probab=33.39 E-value=42 Score=25.12 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=29.7
Q ss_pred hhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006857 371 LSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLES 414 (628)
Q Consensus 371 lttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~ 414 (628)
|.+|.||+-..++..|..|+|.+ +.++|-.+.-.|-+++.-
T Consensus 14 mlsvdygngkkvyytentfcimv---sfilfviiflsmftilac 54 (72)
T PHA02909 14 MLSVDYGNGKKVYYTENTFCIMV---SFILFVIIFLSMFTILAC 54 (72)
T ss_pred EEEEecCCCeEEEEeccchhHHH---HHHHHHHHHHHHHHHHHH
Confidence 67888998888888888887765 445666666667666654
No 71
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=33.34 E-value=1.9e+02 Score=27.98 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=33.5
Q ss_pred ceEEeCCCCeE---------eccCCCcCeEEEEEeeEEEEEEecC-CeeeEEEEEEecCCCeEe
Q 006857 508 KPVLYTEKSFI---------VREGDPVEEMLFVMRGNLVSTTTYG-GRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 508 ~~~~~~~ge~I---------~~eGd~~~~lyfI~~G~V~v~~~~~-g~~~~~~~~~l~~Gd~fG 561 (628)
-...+.||... +++.....++|++++|+..+...+. |.. ....+.+||.+=
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~---~~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEA---RWIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcE---EEEEECCCCEEE
Confidence 34557777753 4444445699999999998865432 221 147889999864
No 72
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.99 E-value=3.7e+02 Score=31.74 Aligned_cols=73 Identities=30% Similarity=0.449 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhccCCCcccc-----CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH
Q 006857 361 FYCFWWGLRNLSSLGQNLKTS-----TFVGEVFFAIFISISGLVLFALLIGNMQKYLESTT-VRLEEMRVKRQDAEQWMS 434 (628)
Q Consensus 361 ~~slyw~l~tlttvGygd~~~-----~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~-~~~~~~~~~~~~~~~~m~ 434 (628)
..+++|++-.++-++--++.- .++++.+|.+-.++.=+++.-.+|+.|.+-.|... ....|+ |-..++-||+
T Consensus 555 ~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEW--KFARAKLw~s 632 (822)
T KOG3609|consen 555 SKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEW--KFARAKLWMS 632 (822)
T ss_pred HHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHH--HHHHHHHHHH
Confidence 468999998776655333321 12333344433333334555555555555555432 122233 3344556665
Q ss_pred h
Q 006857 435 H 435 (628)
Q Consensus 435 ~ 435 (628)
.
T Consensus 633 y 633 (822)
T KOG3609|consen 633 Y 633 (822)
T ss_pred H
Confidence 5
No 73
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=32.96 E-value=2.5e+02 Score=30.57 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=14.8
Q ss_pred HHHHHHhhhh-hhHHHHHhhc
Q 006857 177 KAIAKRYLMS-YFIVDILAIL 196 (628)
Q Consensus 177 ~~Ia~~Yl~~-~F~iDlls~l 196 (628)
++..++|+++ |-++|++.++
T Consensus 233 ~~~g~~y~~~~WN~~e~~ii~ 253 (425)
T PF08016_consen 233 RREGRAYFKSFWNWLELLIIL 253 (425)
T ss_pred HHhhhHHhhhcCcHHHHHHHH
Confidence 4444789988 8889987664
No 74
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=32.21 E-value=80 Score=27.38 Aligned_cols=48 Identities=21% Similarity=0.410 Sum_probs=30.5
Q ss_pred CCCHhHHHHHHHHHHHHHHhh---------cCC--C--HHHHhhcCChhHHHHHHHHHhHH
Q 006857 437 MLPENLRDRIRRYEQYKWQET---------RGV--E--EEGLLRNLPKDLRRDIKRHLCWD 484 (628)
Q Consensus 437 ~lp~~L~~rV~~y~~~~w~~~---------~~~--~--e~~ll~~Lp~~Lr~~i~~~l~~~ 484 (628)
-||+++|..|..-+.-.-... .+. . ..++|..||++||.+|...-...
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 478888888855443321100 000 0 25899999999999998765443
No 75
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.88 E-value=3.5e+02 Score=34.86 Aligned_cols=46 Identities=15% Similarity=0.350 Sum_probs=31.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhe-eeeeecCccccCCCeeecCHHHHHHHhhhh-hhHHHHHhhcchh
Q 006857 132 LEITACVLRSFIDTFYILRIIFQFR-TGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPLP 199 (628)
Q Consensus 132 ~~~~~~~~~~~~d~~f~iDi~l~f~-t~y~~~~~~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~ 199 (628)
+...+.+.+.++-.+|.+++.+... -|+ +.|.++ |.++|.+-+. +.
T Consensus 471 ~~~~l~~~~~vF~~lF~~Em~~ki~al~~---------------------~~yF~~~~n~fD~~iv~-l~ 518 (1592)
T KOG2301|consen 471 RNYLLYLGNVVFTGLFTVEMILKIYALGP---------------------RNYFRRGWNIFDLIIVL-LS 518 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCc---------------------HHHHhhhcchheEEEEe-hh
Confidence 3556677778888888888887753 222 346666 7888877666 44
No 76
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=29.86 E-value=93 Score=35.15 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006857 361 FYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLE 413 (628)
Q Consensus 361 ~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~ 413 (628)
-.++|++-..+..-|-|.-+|....-+++.++++=+.+++-|-..+|++..+.
T Consensus 615 ssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 615 SSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 35788777777777777889998888888888888888888877788887764
No 77
>PRK09108 type III secretion system protein HrcU; Validated
Probab=28.38 E-value=2.1e+02 Score=30.54 Aligned_cols=68 Identities=4% Similarity=0.158 Sum_probs=45.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHH
Q 006857 382 TFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRY 449 (628)
Q Consensus 382 ~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y 449 (628)
......++.++..++..++.++++-.+..+.-....-.++++-..+++++-+|+..-+|+++.|+|+-
T Consensus 175 ~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~ 242 (353)
T PRK09108 175 PDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRL 242 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 33455566666666666666666666666665554455555555668888888888888888887763
No 78
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.83 E-value=3.8e+02 Score=26.05 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHH
Q 006857 396 SGLVLFALLIGNMQKYLESTTVRL---EEMRVKRQDAEQWM 433 (628)
Q Consensus 396 ~G~~lfa~lig~~~~~l~~~~~~~---~~~~~~~~~~~~~m 433 (628)
+++.+.|.++|...++++...... +++++.+++.++.+
T Consensus 48 lvilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~ 88 (201)
T COG1422 48 LVILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEF 88 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777664433 34444444444444
No 79
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=25.33 E-value=2e+02 Score=30.85 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=33.9
Q ss_pred ceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEe
Q 006857 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (628)
....+.||...-.--....++.++++|++++...+ +++.. ...+++||.+=
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~---~~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY---IDDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE---EeEECCCCEEE
Confidence 34557777765332234568999999999996644 34431 34799999874
No 80
>PRK06771 hypothetical protein; Provisional
Probab=25.19 E-value=3.9e+02 Score=22.58 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Q 006857 402 ALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRML 438 (628)
Q Consensus 402 a~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~l 438 (628)
.|+.-.+..+...+..+....+.+++.+.+.+-.-..
T Consensus 15 i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~ 51 (93)
T PRK06771 15 IYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDR 51 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3455566666666777777777777666555544333
No 81
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=24.81 E-value=2e+02 Score=30.81 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=34.7
Q ss_pred cceEEeCCCCeEecc-CCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEe
Q 006857 507 LKPVLYTEKSFIVRE-GDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 507 l~~~~~~~ge~I~~e-Gd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fG 561 (628)
+....++||...-.- -...+++++|++|++++... .+++.. ...+++||.+=
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~---~~~l~~GD~~~ 300 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNAR---TFDYQAGDVGY 300 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEE---EEEECCCCEEE
Confidence 455667888876433 23367999999999998653 233322 36799999753
No 82
>PRK11171 hypothetical protein; Provisional
Probab=23.38 E-value=1.9e+02 Score=29.40 Aligned_cols=49 Identities=29% Similarity=0.320 Sum_probs=37.8
Q ss_pred ccceEEeCCCCeEec-cCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 506 HLKPVLYTEKSFIVR-EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 506 ~l~~~~~~~ge~I~~-eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
.+....++||..+-. +.....+.++|++|++.+.. +++ ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NND-----WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 456677999999866 46667799999999998854 344 46899999875
No 83
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=23.32 E-value=2.8e+02 Score=22.85 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=43.1
Q ss_pred ccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEE
Q 006857 506 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ 585 (628)
Q Consensus 506 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~ 585 (628)
......+.||..+=.......+..+|++|...- ++ ..+.+||+.=... -+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~--------~~~~~G~~~~~p~--------------g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GD--------GRYGAGDWLRLPP--------------GSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TT--------CEEETTEEEEE-T--------------TEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CC--------ccCCCCeEEEeCC--------------CCccccC
Confidence 455677889988877777778888999999852 22 2358888764332 1456778
Q ss_pred EcceEEEEE
Q 006857 586 ALTEVEAFS 594 (628)
Q Consensus 586 A~t~~ell~ 594 (628)
+.+.|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888898875
No 84
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=22.79 E-value=2.4e+02 Score=25.42 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=35.1
Q ss_pred ceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEE-ecCC-----eeeEEEEEEecCCCeEehh
Q 006857 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGG-----RTGFFNAVYLKAGDFCGEA 563 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~-~~~g-----~~~~~~~~~l~~Gd~fGe~ 563 (628)
....+.||....-.=..++++.+|.+|+..+.. ..++ +.....+ .+++||+|---
T Consensus 37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v-~l~~Gdv~~vP 97 (144)
T PF00190_consen 37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKV-RLKAGDVFVVP 97 (144)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEE-EEETTEEEEE-
T ss_pred EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeecee-eeecccceeec
Confidence 344457888776554478899999999999633 3333 1111113 59999998643
No 85
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.61 E-value=3.4e+02 Score=29.03 Aligned_cols=69 Identities=10% Similarity=0.198 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 006857 384 VGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQY 452 (628)
Q Consensus 384 ~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~~ 452 (628)
....+..++..++..++.++++-.+..+.-....-.++++-..+++++-.|+..-+|+++.|+|+--+-
T Consensus 170 ~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~~~re 238 (361)
T PRK08156 170 LIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREAHQE 238 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 334444444555555555555555555554444444555556678889999999999999998875443
No 86
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=21.61 E-value=1.6e+02 Score=19.82 Aligned_cols=26 Identities=15% Similarity=0.228 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCCH-----hHHHHHHHHH
Q 006857 425 KRQDAEQWMSHRMLPE-----NLRDRIRRYE 450 (628)
Q Consensus 425 ~~~~~~~~m~~~~lp~-----~L~~rV~~y~ 450 (628)
+..++.++++.+++|. +|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 3567888999999885 6888887764
No 87
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=21.56 E-value=1.5e+02 Score=27.66 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=33.7
Q ss_pred EEeCCCC--eEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhh
Q 006857 510 VLYTEKS--FIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEAL 564 (628)
Q Consensus 510 ~~~~~ge--~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ 564 (628)
..++||- ...+.-...+++..|++|+..+.. +++ ...++|||+.|--+
T Consensus 47 ~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~-d~~------e~~lrpGD~~gFpA 96 (161)
T COG3837 47 EIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE-DGG------ETRLRPGDSAGFPA 96 (161)
T ss_pred EEeCCCCccccccccccCceEEEEEcCceEEEE-CCe------eEEecCCceeeccC
Confidence 3455553 345555667899999999997654 333 36899999998654
No 88
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=21.53 E-value=78 Score=34.37 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=33.2
Q ss_pred CCCeEehhhhhhhcCCCCCCCCCCcccEEEEc-ceEEEEEeeHHHHHHHHHHhH
Q 006857 556 AGDFCGEALLTWALDPQSSSNRPLSTRTVQAL-TEVEAFSLMADDLKSVASQFR 608 (628)
Q Consensus 556 ~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~-t~~ell~L~~~~f~~ll~~~p 608 (628)
+||-||..++. |..+|.+|+..- .+|..+.+++++|..++++--
T Consensus 1 eGddfgklalv---------nd~praativl~ed~~~fl~vDk~~Fn~I~~~vE 45 (573)
T KOG2378|consen 1 EGDDFGKLALV---------NDAPRAATIVLREDNCHFLRVDKHDFNRILHDVE 45 (573)
T ss_pred CCcccchhccc---------cccccccceeeecCCCcceeecHHHHHHHHHhhh
Confidence 58899999874 333456666555 559999999999999987643
No 89
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=20.22 E-value=4.1e+02 Score=30.75 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=29.6
Q ss_pred cCCcHHHHHHHHhccceEEeCCCCeEeccCCCcC
Q 006857 493 EKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVE 526 (628)
Q Consensus 493 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~ 526 (628)
...++...++.+..++++...+|++|+++|+..+
T Consensus 222 ~e~T~~~~~ea~~~v~~V~I~~gqiIv~~ge~It 255 (700)
T COG1480 222 EEQTENLRQEALSKVEPVKISKGQIIVKEGEIIT 255 (700)
T ss_pred HHHHHHHHHHHHhccCceEEecCceEeecCceec
Confidence 3457778889999999999999999999999765
Done!