Query 006857
Match_columns 628
No_of_seqs 481 out of 2996
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 10:48:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 5.7E-34 1.9E-38 302.4 16.3 185 358-617 160-344 (355)
2 3ukn_A Novel protein similar t 100.0 2.6E-31 8.8E-36 260.9 18.9 197 409-619 1-197 (212)
3 2ptm_A Hyperpolarization-activ 100.0 1.9E-30 6.4E-35 251.9 24.2 188 414-616 2-189 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 3.1E-30 1.1E-34 251.3 22.7 188 413-616 2-189 (202)
5 1orq_C Potassium channel; volt 99.9 1.1E-21 3.8E-26 194.0 17.9 211 94-414 9-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 4.8E-19 1.7E-23 164.5 18.2 143 462-617 5-147 (160)
7 2r9r_B Paddle chimera voltage 99.8 2.7E-18 9.1E-23 189.4 17.4 292 86-482 174-489 (514)
8 3ocp_A PRKG1 protein; serine/t 99.7 2.2E-17 7.6E-22 149.9 12.7 131 468-613 7-137 (139)
9 3idb_B CAMP-dependent protein 99.7 1E-16 3.5E-21 149.3 14.8 125 477-612 31-155 (161)
10 3mdp_A Cyclic nucleotide-bindi 99.7 1.7E-16 5.7E-21 144.0 15.5 130 483-621 5-136 (142)
11 1wgp_A Probable cyclic nucleot 99.7 1.3E-17 4.3E-22 150.9 6.6 129 484-612 6-134 (137)
12 3gyd_A CNMP-BD protein, cyclic 99.7 3.8E-16 1.3E-20 149.7 17.0 144 462-616 13-161 (187)
13 2pqq_A Putative transcriptiona 99.7 4.5E-16 1.5E-20 142.2 15.6 125 483-618 4-129 (149)
14 2z69_A DNR protein; beta barre 99.7 6.4E-16 2.2E-20 142.2 15.3 128 483-620 11-139 (154)
15 3dn7_A Cyclic nucleotide bindi 99.6 3E-15 1E-19 143.7 16.9 124 482-615 5-129 (194)
16 4ev0_A Transcription regulator 99.6 4E-15 1.4E-19 145.2 17.5 120 486-616 1-121 (216)
17 3pna_A CAMP-dependent protein 99.6 2.8E-15 9.5E-20 138.6 15.2 117 480-611 34-150 (154)
18 1vp6_A CNBD, cyclic-nucleotide 99.6 2.7E-15 9.3E-20 135.5 14.6 120 483-619 10-129 (138)
19 3shr_A CGMP-dependent protein 99.6 2.9E-15 9.9E-20 154.1 15.8 140 463-617 18-157 (299)
20 3fx3_A Cyclic nucleotide-bindi 99.6 5E-15 1.7E-19 146.8 16.9 126 482-618 9-135 (237)
21 3e97_A Transcriptional regulat 99.6 5.3E-15 1.8E-19 146.0 16.2 125 483-618 5-130 (231)
22 3d0s_A Transcriptional regulat 99.6 5E-15 1.7E-19 145.8 14.4 124 483-617 5-129 (227)
23 1zyb_A Transcription regulator 99.6 9.6E-15 3.3E-19 144.6 16.0 127 482-618 16-145 (232)
24 3iwz_A CAP-like, catabolite ac 99.6 1.6E-14 5.4E-19 142.3 17.4 126 483-618 10-141 (230)
25 3dv8_A Transcriptional regulat 99.6 1.6E-14 5.3E-19 141.3 16.6 122 484-616 3-127 (220)
26 4ava_A Lysine acetyltransferas 99.6 2.2E-14 7.4E-19 149.9 16.1 125 483-620 12-137 (333)
27 3dkw_A DNR protein; CRP-FNR, H 99.6 5.5E-15 1.9E-19 145.3 10.4 125 483-617 8-133 (227)
28 2gau_A Transcriptional regulat 99.6 2.8E-14 9.5E-19 140.9 15.3 121 486-617 12-133 (232)
29 2a9h_A Voltage-gated potassium 99.6 9.9E-15 3.4E-19 134.7 10.9 63 357-419 82-144 (155)
30 2d93_A RAP guanine nucleotide 99.6 1.9E-15 6.4E-20 136.2 5.9 123 471-608 3-127 (134)
31 3shr_A CGMP-dependent protein 99.6 1.8E-14 6.1E-19 148.2 12.8 128 480-618 153-282 (299)
32 3ryp_A Catabolite gene activat 99.5 8.5E-14 2.9E-18 135.0 16.9 117 490-616 2-119 (210)
33 2qcs_B CAMP-dependent protein 99.5 9.3E-14 3.2E-18 142.0 17.6 126 479-619 34-159 (291)
34 2qcs_B CAMP-dependent protein 99.5 8.6E-14 2.9E-18 142.3 16.9 127 481-618 154-282 (291)
35 3of1_A CAMP-dependent protein 99.5 4.8E-14 1.6E-18 140.1 14.5 120 480-613 121-240 (246)
36 2fmy_A COOA, carbon monoxide o 99.5 3E-14 1E-18 139.5 12.3 116 484-617 4-119 (220)
37 3tnp_B CAMP-dependent protein 99.5 1.1E-13 3.8E-18 149.3 17.4 123 478-611 139-261 (416)
38 3of1_A CAMP-dependent protein 99.5 3.7E-14 1.2E-18 140.9 12.3 119 482-615 5-123 (246)
39 2oz6_A Virulence factor regula 99.5 3E-13 1E-17 130.8 17.4 116 495-617 1-117 (207)
40 3kcc_A Catabolite gene activat 99.5 3.1E-13 1E-17 136.3 16.6 114 493-616 55-169 (260)
41 1ft9_A Carbon monoxide oxidati 99.5 6.2E-14 2.1E-18 137.6 10.6 114 485-616 1-114 (222)
42 4din_B CAMP-dependent protein 99.5 1.9E-13 6.5E-18 145.8 15.2 126 479-619 125-250 (381)
43 4din_B CAMP-dependent protein 99.5 1.1E-13 3.6E-18 147.8 12.1 128 480-618 244-373 (381)
44 1o5l_A Transcriptional regulat 99.5 2.2E-13 7.4E-18 132.9 13.3 120 489-618 4-124 (213)
45 4h33_A LMO2059 protein; bilaye 99.5 7.1E-14 2.4E-18 126.6 7.6 92 360-451 44-135 (137)
46 3tnp_B CAMP-dependent protein 99.5 1.4E-13 4.9E-18 148.4 10.8 126 481-617 264-396 (416)
47 3vou_A ION transport 2 domain 99.4 4.1E-13 1.4E-17 123.5 11.9 86 360-445 53-148 (148)
48 1o7f_A CAMP-dependent RAP1 gua 99.4 6E-13 2E-17 145.7 15.1 131 469-611 27-160 (469)
49 2ih3_C Voltage-gated potassium 99.4 6.6E-13 2.3E-17 117.8 11.6 60 358-417 60-119 (122)
50 1o7f_A CAMP-dependent RAP1 gua 99.4 7.3E-13 2.5E-17 145.0 13.6 122 481-616 334-457 (469)
51 3e6c_C CPRK, cyclic nucleotide 99.4 1E-12 3.6E-17 131.3 12.8 118 486-617 11-129 (250)
52 3la7_A Global nitrogen regulat 99.3 1.2E-11 4.2E-16 123.1 15.8 112 497-617 30-145 (243)
53 2bgc_A PRFA; bacterial infecti 99.3 1.6E-11 5.4E-16 121.8 16.2 116 493-618 2-121 (238)
54 3eff_K Voltage-gated potassium 99.3 8.9E-12 3E-16 113.3 13.1 60 358-417 39-98 (139)
55 4f7z_A RAP guanine nucleotide 99.3 1.1E-11 3.8E-16 148.1 16.3 120 480-611 38-160 (999)
56 3cf6_E RAP guanine nucleotide 99.3 9.6E-12 3.3E-16 142.0 13.0 133 463-610 12-146 (694)
57 4f7z_A RAP guanine nucleotide 99.2 6.8E-11 2.3E-15 141.3 16.8 113 481-607 334-448 (999)
58 3rvy_A ION transport protein; 99.2 1.3E-10 4.5E-15 118.7 12.2 60 358-417 179-244 (285)
59 3b02_A Transcriptional regulat 99.1 2.8E-10 9.4E-15 109.1 12.5 80 510-601 2-82 (195)
60 2k1e_A Water soluble analogue 99.1 3.3E-11 1.1E-15 103.5 4.0 59 359-417 40-98 (103)
61 2q67_A Potassium channel prote 99.1 6.1E-10 2.1E-14 97.3 10.1 58 360-417 50-107 (114)
62 3ouf_A Potassium channel prote 99.1 1.3E-09 4.4E-14 92.3 11.7 55 360-414 33-87 (97)
63 2zcw_A TTHA1359, transcription 99.0 1E-09 3.5E-14 105.7 10.0 86 503-601 1-89 (202)
64 3ldc_A Calcium-gated potassium 99.0 1.4E-09 4.8E-14 89.1 7.7 54 359-412 28-81 (82)
65 3pjs_K KCSA, voltage-gated pot 98.9 6.3E-11 2.2E-15 110.9 -0.6 64 358-421 66-129 (166)
66 1xl4_A Inward rectifier potass 98.8 2.5E-08 8.6E-13 101.8 11.7 56 358-413 81-136 (301)
67 1p7b_A Integral membrane chann 98.7 1.5E-08 5.2E-13 104.6 8.7 57 359-415 96-152 (333)
68 3um7_A Potassium channel subfa 98.7 3.7E-08 1.3E-12 100.3 10.5 76 359-440 115-190 (309)
69 2qks_A KIR3.1-prokaryotic KIR 98.6 2E-07 6.8E-12 96.0 12.4 57 359-415 78-134 (321)
70 3sya_A G protein-activated inw 98.5 5.4E-07 1.9E-11 92.8 11.2 59 359-417 91-151 (340)
71 4gx0_A TRKA domain protein; me 98.4 1.4E-06 4.7E-11 97.5 12.4 55 359-413 51-106 (565)
72 3ukm_A Potassium channel subfa 98.4 5.7E-07 1.9E-11 90.2 8.1 56 359-414 93-148 (280)
73 3um7_A Potassium channel subfa 98.3 2.8E-07 9.6E-12 93.8 3.8 58 360-417 225-288 (309)
74 3ukm_A Potassium channel subfa 98.2 8.8E-07 3E-11 88.8 5.8 57 360-416 202-265 (280)
75 3spc_A Inward-rectifier K+ cha 98.2 2.7E-06 9.3E-11 87.7 9.3 58 358-415 93-152 (343)
76 4dxw_A Navrh, ION transport pr 98.1 3.3E-05 1.1E-09 75.8 14.0 75 94-198 13-88 (229)
77 1lnq_A MTHK channels, potassiu 98.1 2.9E-07 1E-11 96.0 -1.9 57 360-416 46-102 (336)
78 2kyh_A KVAP, voltage-gated pot 97.5 0.00015 5E-09 65.8 6.1 77 95-201 23-99 (147)
79 1ors_C Potassium channel; volt 97.3 0.00031 1.1E-08 62.6 5.8 79 93-201 6-84 (132)
80 3fjs_A Uncharacterized protein 69.3 19 0.00067 29.9 8.4 67 507-594 38-104 (114)
81 3rns_A Cupin 2 conserved barre 68.6 20 0.00068 34.0 9.3 68 507-595 39-106 (227)
82 2ozj_A Cupin 2, conserved barr 66.0 24 0.00083 28.9 8.3 66 509-595 42-107 (114)
83 3lwc_A Uncharacterized protein 64.6 18 0.00062 30.6 7.2 45 509-561 44-88 (119)
84 3kg2_A Glutamate receptor 2; I 63.3 6.6 0.00023 44.9 5.5 55 359-414 563-617 (823)
85 2pfw_A Cupin 2, conserved barr 59.3 56 0.0019 26.6 9.4 68 507-595 36-103 (116)
86 1yhf_A Hypothetical protein SP 59.0 45 0.0016 27.1 8.8 68 507-595 42-109 (115)
87 1o5u_A Novel thermotoga mariti 55.2 42 0.0014 27.4 7.6 47 507-561 33-79 (101)
88 1dgw_A Canavalin; duplicated s 52.1 20 0.00067 32.7 5.6 51 507-561 43-94 (178)
89 1yfu_A 3-hydroxyanthranilate-3 51.8 23 0.00079 32.2 5.8 35 524-561 54-88 (174)
90 2gu9_A Tetracenomycin polyketi 48.1 31 0.0011 27.9 5.8 48 507-561 23-73 (113)
91 3h8u_A Uncharacterized conserv 47.7 30 0.001 28.9 5.8 49 507-561 41-90 (125)
92 1v70_A Probable antibiotics sy 46.0 35 0.0012 26.9 5.8 47 508-561 31-78 (105)
93 4e2g_A Cupin 2 conserved barre 45.3 32 0.0011 28.6 5.6 48 507-561 43-90 (126)
94 3bcw_A Uncharacterized protein 45.0 19 0.00066 30.7 4.1 45 511-562 55-99 (123)
95 3d0j_A Uncharacterized protein 43.6 42 0.0014 29.4 5.9 64 520-598 45-110 (140)
96 3es4_A Uncharacterized protein 43.2 27 0.00092 29.6 4.6 46 511-563 48-93 (116)
97 3rns_A Cupin 2 conserved barre 42.2 73 0.0025 30.0 8.2 68 507-595 155-223 (227)
98 1zvf_A 3-hydroxyanthranilate 3 41.2 33 0.0011 31.2 5.0 37 523-561 52-91 (176)
99 2bnm_A Epoxidase; oxidoreducta 39.4 43 0.0015 30.5 5.9 49 510-561 122-173 (198)
100 2fqp_A Hypothetical protein BP 38.5 22 0.00076 28.4 3.3 49 508-561 21-70 (97)
101 3ibm_A Cupin 2, conserved barr 38.1 46 0.0016 29.8 5.7 48 507-561 58-105 (167)
102 3es1_A Cupin 2, conserved barr 35.8 41 0.0014 30.5 5.0 48 507-560 81-128 (172)
103 4b29_A Dimethylsulfoniopropion 35.1 53 0.0018 31.0 5.7 44 512-561 139-182 (217)
104 2qnk_A 3-hydroxyanthranilate 3 34.6 75 0.0026 31.2 6.7 63 517-597 44-106 (286)
105 1lr5_A Auxin binding protein 1 34.2 45 0.0015 29.4 5.0 50 508-561 44-99 (163)
106 4axo_A EUTQ, ethanolamine util 33.5 55 0.0019 29.0 5.3 31 524-561 83-113 (151)
107 2q30_A Uncharacterized protein 33.0 1.7E+02 0.0058 23.0 8.1 68 508-595 36-105 (110)
108 2i45_A Hypothetical protein; n 32.8 43 0.0015 27.0 4.2 68 512-599 35-102 (107)
109 4i4a_A Similar to unknown prot 32.7 64 0.0022 26.8 5.5 80 508-608 37-120 (128)
110 1fi2_A Oxalate oxidase, germin 32.5 91 0.0031 28.7 7.0 52 507-561 74-130 (201)
111 3kgz_A Cupin 2 conserved barre 32.2 44 0.0015 29.6 4.5 46 509-561 48-93 (156)
112 2b8m_A Hypothetical protein MJ 32.1 49 0.0017 27.1 4.6 46 510-561 32-77 (117)
113 3d82_A Cupin 2, conserved barr 31.8 1.1E+02 0.0038 23.8 6.7 51 525-596 50-100 (102)
114 2opk_A Hypothetical protein; p 31.3 54 0.0018 27.0 4.6 34 523-561 51-84 (112)
115 3i7d_A Sugar phosphate isomera 31.2 47 0.0016 29.6 4.5 47 508-561 46-94 (163)
116 3jzv_A Uncharacterized protein 30.9 43 0.0015 30.1 4.2 46 509-561 57-102 (166)
117 2f4p_A Hypothetical protein TM 30.7 82 0.0028 27.3 6.0 48 508-561 51-98 (147)
118 3l2h_A Putative sugar phosphat 30.0 50 0.0017 29.1 4.5 46 508-560 49-96 (162)
119 3bu7_A Gentisate 1,2-dioxygena 29.7 45 0.0016 34.6 4.6 48 508-561 126-173 (394)
120 1o4t_A Putative oxalate decarb 29.3 63 0.0022 27.4 4.9 46 509-561 61-107 (133)
121 2cav_A Protein (canavalin); vi 29.0 61 0.0021 34.2 5.6 52 506-561 87-139 (445)
122 1sfn_A Conserved hypothetical 28.7 75 0.0026 30.3 5.8 50 506-562 166-216 (246)
123 1vj2_A Novel manganese-contain 28.7 58 0.002 27.3 4.5 46 509-561 52-97 (126)
124 2pyt_A Ethanolamine utilizatio 28.3 68 0.0023 27.5 4.9 45 509-562 61-105 (133)
125 1y9q_A Transcriptional regulat 28.2 91 0.0031 28.1 6.1 45 510-561 109-155 (192)
126 3lag_A Uncharacterized protein 27.2 17 0.0006 29.5 0.8 50 507-560 19-69 (98)
127 1uij_A Beta subunit of beta co 26.6 69 0.0024 33.5 5.5 53 506-561 50-102 (416)
128 2ea7_A 7S globulin-1; beta bar 26.5 75 0.0026 33.4 5.7 53 506-561 62-114 (434)
129 3h7j_A Bacilysin biosynthesis 26.4 1.1E+02 0.0037 29.1 6.5 47 507-560 36-82 (243)
130 2o1q_A Putative acetyl/propion 26.1 1E+02 0.0034 26.8 5.7 52 507-563 46-97 (145)
131 2vqa_A SLL1358 protein, MNCA; 26.0 1.1E+02 0.0037 30.9 6.8 51 508-561 55-107 (361)
132 1j58_A YVRK protein; cupin, de 25.8 1E+02 0.0036 31.4 6.7 52 507-561 81-133 (385)
133 3cew_A Uncharacterized cupin p 25.1 77 0.0026 26.3 4.6 47 508-561 29-77 (125)
134 3ht1_A REMF protein; cupin fol 24.9 68 0.0023 27.2 4.4 46 511-561 45-90 (145)
135 2d5f_A Glycinin A3B4 subunit; 24.1 1.5E+02 0.0052 31.6 7.6 60 500-561 362-423 (493)
136 1sef_A Conserved hypothetical 23.9 1E+02 0.0034 29.9 5.8 48 507-561 184-232 (274)
137 2oa2_A BH2720 protein; 1017534 23.9 1.3E+02 0.0043 25.9 5.9 50 509-560 47-98 (148)
138 1sq4_A GLXB, glyoxylate-induce 23.6 1E+02 0.0035 30.0 5.8 50 505-561 191-241 (278)
139 2q1z_B Anti-sigma factor CHRR, 23.5 1.5E+02 0.0052 27.1 6.7 65 506-595 126-192 (195)
140 4e2q_A Ureidoglycine aminohydr 23.4 1.6E+02 0.0054 28.7 7.0 69 508-596 73-141 (266)
141 2vpv_A Protein MIF2, MIF2P; nu 23.3 64 0.0022 29.1 3.8 45 510-561 93-139 (166)
142 3c3v_A Arachin ARAH3 isoform; 23.2 1.4E+02 0.0048 32.0 7.1 59 500-560 367-427 (510)
143 2phl_A Phaseolin; plant SEED s 22.4 89 0.003 32.4 5.2 50 506-559 53-103 (397)
144 1fxz_A Glycinin G1; proglycini 21.9 1.4E+02 0.0049 31.7 6.8 55 505-561 338-394 (476)
145 1j58_A YVRK protein; cupin, de 21.8 1.4E+02 0.0047 30.4 6.7 52 507-561 259-312 (385)
146 1sfn_A Conserved hypothetical 21.6 1.4E+02 0.0047 28.4 6.2 44 509-561 54-97 (246)
147 3fz3_A Prunin; TREE NUT allerg 21.6 2.1E+02 0.0072 30.7 8.0 61 499-561 388-450 (531)
148 3bu7_A Gentisate 1,2-dioxygena 21.5 98 0.0033 32.1 5.3 76 507-603 296-374 (394)
149 2vqa_A SLL1358 protein, MNCA; 21.4 1.5E+02 0.0052 29.7 6.8 52 507-561 236-289 (361)
150 1x82_A Glucose-6-phosphate iso 20.0 2.4E+02 0.0081 25.5 7.2 33 526-561 97-130 (190)
151 2d40_A Z3393, putative gentisa 20.0 3.5E+02 0.012 27.3 9.1 74 508-602 271-344 (354)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=5.7e-34 Score=302.39 Aligned_cols=185 Identities=24% Similarity=0.370 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Q 006857 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRM 437 (628)
Q Consensus 358 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~ 437 (628)
..|..|+||+++||||+||||++|.+..|++++++++++|++++++++|.+.+.+++...+
T Consensus 160 ~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~------------------- 220 (355)
T 3beh_A 160 GSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR------------------- 220 (355)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred ccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 4588999999999999999999999999999999999999999999999998877532110
Q ss_pred CCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHHHHHHHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCe
Q 006857 438 LPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSF 517 (628)
Q Consensus 438 lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~ 517 (628)
+++. -+.+.++++|+|++++++.+++++..++.+.++|||.
T Consensus 221 ---------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~ 261 (355)
T 3beh_A 221 ---------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAV 261 (355)
T ss_dssp ---------HHHH------------------------------HHHC---------------------------------
T ss_pred ---------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCE
Confidence 0000 0246788899999999999999999999999999999
Q ss_pred EeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeH
Q 006857 518 IVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMA 597 (628)
Q Consensus 518 I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~ 597 (628)
|++|||+++++|+|.+|.|+++..+ + ..+++|++|||.+++. + .+++++++|.++|+++.+++
T Consensus 262 I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l~---~------~~~~~~~~A~~~~~l~~i~~ 324 (355)
T 3beh_A 262 ICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALIS---G------EPRSATVSAATTVSLLSLHS 324 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHhC---C------CCcceEEEECccEEEEEEeH
Confidence 9999999999999999999997654 1 4789999999998752 1 12578999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 006857 598 DDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 598 ~~f~~ll~~~p~l~~~~l~~ 617 (628)
++|.++++++|++.....+.
T Consensus 325 ~~f~~ll~~~p~~~~~l~~~ 344 (355)
T 3beh_A 325 ADFQMLCSSSPEIAEIFRKT 344 (355)
T ss_dssp --------------------
T ss_pred HHHHHHHHHCHHHHHHHHHH
Confidence 99999999999987544443
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=2.6e-31 Score=260.85 Aligned_cols=197 Identities=23% Similarity=0.365 Sum_probs=169.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHHHHHHHHHhHHHhhc
Q 006857 409 QKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMR 488 (628)
Q Consensus 409 ~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~ 488 (628)
++++++++.+..+|+++++.+++||+++++|++|+.||++|++|.|.++++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999998887 8
Q ss_pred cccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhh
Q 006857 489 VPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWA 568 (628)
Q Consensus 489 v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ 568 (628)
+|+|++++++.++.++..++.+.|+||++|+++||+++++|||.+|.|+++. +|. .+..+++|++|||.+++.+
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~~----~~~~l~~G~~fGe~~~~~~ 153 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DNT----VLAILGKGDLIGSDSLTKE 153 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SSC----EEEEECTTCEEECSCCSSS
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CCe----EEEEecCCCCcCcHHhccC
Confidence 9999999999999999999999999999999999999999999999999986 232 2799999999999987521
Q ss_pred cCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHH
Q 006857 569 LDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 619 (628)
Q Consensus 569 l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~ 619 (628)
.. ++++++++|.++|+++.|++++|.+++.++|++....++...
T Consensus 154 ~~-------~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~ 197 (212)
T 3ukn_A 154 QV-------IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQ 197 (212)
T ss_dssp SC-------CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CC-------CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHH
Confidence 10 147889999999999999999999999999998866555543
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=1.9e-30 Score=251.93 Aligned_cols=188 Identities=23% Similarity=0.431 Sum_probs=171.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHHHHHHHHHhHHHhhcccccc
Q 006857 414 STTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFE 493 (628)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~lF~ 493 (628)
+++.+..+|+++++++++||+++++|++|+.||++|++|.|+ +++.+|+++++.||++||.++..+++.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 567888999999999999999999999999999999999997 4789999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCC
Q 006857 494 KMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQS 573 (628)
Q Consensus 494 ~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~ 573 (628)
+++++.+..++..++...|+||++|+++||+++++|||.+|.|+++. .+|+ . +..+++|++|||.+++.+ .
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~--~~~l~~G~~fGe~~~~~~-~--- 151 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--I--ATSLSDGSYFGEICLLTR-E--- 151 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--E--EEEECTTCEESCHHHHHS-S---
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--E--EEEecCCCEechHHHcCC-C---
Confidence 99999999999999999999999999999999999999999999987 4444 2 789999999999988632 1
Q ss_pred CCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHH
Q 006857 574 SSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 616 (628)
Q Consensus 574 ~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~ 616 (628)
+++++++|.++|+++.|++++|.++++++|++....++
T Consensus 152 -----~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~ 189 (198)
T 2ptm_A 152 -----RRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEE 189 (198)
T ss_dssp -----CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred -----ccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHH
Confidence 26789999999999999999999999999998854443
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=3.1e-30 Score=251.26 Aligned_cols=188 Identities=26% Similarity=0.426 Sum_probs=169.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHHHHHHHHHhHHHhhccccc
Q 006857 413 ESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMF 492 (628)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~lF 492 (628)
++++.+..+|+++++++++||+++++|++|+.||++|++|.|+. ++.+++++++.||++||.+|..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 46788999999999999999999999999999999999999974 78999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCC
Q 006857 493 EKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQ 572 (628)
Q Consensus 493 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~ 572 (628)
.+++++.+..++..++...|+||++|+++||+++++|||.+|.|+++. .+|++ ..+++|++|||.+++.+
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~~~---- 150 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLLTR---- 150 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHHHC----
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHhcC----
Confidence 999999999999999999999999999999999999999999999975 44543 46899999999988632
Q ss_pred CCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHH
Q 006857 573 SSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 616 (628)
Q Consensus 573 ~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~ 616 (628)
.+++++++|.++|+++.|++++|.++++++|++.....+
T Consensus 151 -----~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~ 189 (202)
T 3bpz_A 151 -----GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 189 (202)
T ss_dssp -----SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHH
T ss_pred -----CCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHH
Confidence 125789999999999999999999999999998744443
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.87 E-value=1.1e-21 Score=194.04 Aligned_cols=211 Identities=11% Similarity=0.135 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccccceecCCccccccCccchhhhhHHHHHHHHHHHHHHHhhheeeeeecCccccCCCeee
Q 006857 94 WWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELV 173 (628)
Q Consensus 94 ~W~~~~~~~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~~G~lV 173 (628)
.||.+++++.++++++.++....+ . +......+..++.+++++|.+|++++|.++..
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~-~---------~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~------------- 65 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQ-L---------SGEYLVRLYLVDLILVIILWADYAYRAYKSGD------------- 65 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHH-H---------TTCTTTHHHHHHHHHHHHHHHHHHHHHHTTSC-------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc-c---------ChhhhhHHHHHHHHHHHHHHHHHHHHHccccc-------------
Confidence 489888888888888777663221 1 12235678899999999999999999998621
Q ss_pred cCHHHHHHHhhhhhhHHHHHhhcchhHHHHhhhccCCCCChhhhhhhhhHHHHHHhhhhHHHhhhccccccccc-cccee
Q 006857 174 DDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRT-SGILT 252 (628)
Q Consensus 174 ~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~lr~~~~~q~l~Rl~ri~~l~~~l~~~-~~~~~ 252 (628)
+++|+++ +++|++|++|+....... .. ....+.+|++|++| +.|++|+.+..+...+. ...+.
T Consensus 66 ------~~~y~~~-~iiDllailP~~~~~~~~-------~~-~~~~~~lr~lRllR-llR~~r~~~~~~~~~~~l~~~~~ 129 (223)
T 1orq_C 66 ------PAGYVKK-TLYEIPALVPAGLLALIE-------GH-LAGLGLFRLVRLLR-FLRILLIISRGSKFLSAIADAAD 129 (223)
T ss_dssp ------HHHHHHH-HHHHCTTHHHHHHHHHHH-------HH-HHTTTCHHHHHHHH-HHHHHHHHHSCSSHHHHHHHHHH
T ss_pred ------HHHHHHH-hHHHHHHHHHHHHHHHHh-------cc-hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799998 999999999997654210 00 10112344333332 33444444322221111 11111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHhhhcCCCCCCccccccCCCCCCccccccccCCCCCCcccc
Q 006857 253 ETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIK 332 (628)
Q Consensus 253 ~~~~~~~~~~ll~~~l~~H~~~c~wy~~~~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~ 332 (628)
+ .+....+++.++..|+.||++|++... +
T Consensus 130 ~---~~l~~~~~~~~~~~~~~~~~~~~~e~~------------------------------~------------------ 158 (223)
T 1orq_C 130 K---IRFYHLFGAVMLTVLYGAFAIYIVEYP------------------------------D------------------ 158 (223)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHTTSS------------------------------S------------------
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHhC------------------------------C------------------
Confidence 1 122223334455788999998875310 0
Q ss_pred cccccccchhHhhhhcccccCCCchhHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006857 333 NSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYL 412 (628)
Q Consensus 333 ~~~~~~~giy~~~~~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l 412 (628)
.++....|..|+||+++|+||+||||++|.+..|++++++++++|+.++|+.+|.+++.+
T Consensus 159 --------------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~ 218 (223)
T 1orq_C 159 --------------------PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMF 218 (223)
T ss_dssp --------------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011234688999999999999999999999999999999999999999999999999998
Q ss_pred HH
Q 006857 413 ES 414 (628)
Q Consensus 413 ~~ 414 (628)
++
T Consensus 219 ~~ 220 (223)
T 1orq_C 219 QK 220 (223)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=4.8e-19 Score=164.49 Aligned_cols=143 Identities=25% Similarity=0.351 Sum_probs=118.6
Q ss_pred HHHHhhcCChhHHHHHHHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe
Q 006857 462 EEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT 541 (628)
Q Consensus 462 e~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~ 541 (628)
.+++++.||++||.++..+++.+.++++|+|++++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHH
Q 006857 542 YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 542 ~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~ 617 (628)
++. .+..+++|++||+.+++... ..+++++++|.++|+++.|++++|.++++++|++....++.
T Consensus 84 -~~~----~~~~~~~G~~fG~~~~~~~~-------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 147 (160)
T 4f8a_A 84 -DDE----VVAILGKGDVFGDVFWKEAT-------LAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRN 147 (160)
T ss_dssp -TTE----EEEEEETTCEEECCTTTCSS-------CCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred -CCE----EEEEecCCCEeCcHHHhcCc-------ccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 222 27899999999999875211 02367899999999999999999999999999988555443
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.77 E-value=2.7e-18 Score=189.37 Aligned_cols=292 Identities=14% Similarity=0.192 Sum_probs=148.6
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHHhhhhhccccceecCCcc----c-------------cccCccchhhhhHHHHHHHHHH
Q 006857 86 DPQ-GPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRK----C-------------LGLDKTLEITACVLRSFIDTFY 147 (628)
Q Consensus 86 ~P~-s~~~~~W~~~~~~~~~~~~~~~P~~~~~~~~~~~~~----c-------------~~~~~~~~~~~~~~~~~~d~~f 147 (628)
+|. |...+.|+.+++++.++++++..+.- .|....... + ..........+.+++.++.++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLET-LPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhc-cccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 465 56778888888888888887776653 222211100 0 0001113456789999999999
Q ss_pred HHHHHhhheeeeeecCccccCCCeeecCHHHHHHHhhhh-hhHHHHHhhcchhHHHHhhhccCCCCChh--hhhhhhhHH
Q 006857 148 ILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPLPQLVVLIIVPAVKGPVP--LVAKEMLKT 224 (628)
Q Consensus 148 ~iDi~l~f~t~y~~~~~~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~--~~~~~~lr~ 224 (628)
.+|++++|.++- . .++|+++ |.++|+++++|+...+..... ..+.. ......+|+
T Consensus 253 tiE~ilR~~~~~---~----------------k~~Y~ks~wniiDli~iip~~i~l~~~~~---~~~~~~~~~~~~~lrv 310 (514)
T 2r9r_B 253 SFEFLVRFFACP---S----------------KAGFFTNIMNIIDIVAIIPYYVTIFLTES---NKSVLQFQNVRRVVQI 310 (514)
T ss_dssp HHHHHHHHHHSS---C----------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHT---SCSHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhCC---c----------------HHHHHhchhHHHHHHHHHHHHHHHHhhhc---cccchhhhhHHHHHHH
Confidence 999999998752 1 1479999 899999999999654432211 11111 111233443
Q ss_pred HHHHhhhhHHHhhhcccccccccccceehH--HHHHHHHHHH-HHHHHHHHHHHHHHhhhhcccchhHHHHhhhcCCCCC
Q 006857 225 IIFCQYVPRIARIYPLYNDVKRTSGILTET--AWAGAALNLF-LYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSN 301 (628)
Q Consensus 225 ~~~~q~l~Rl~ri~~l~~~l~~~~~~~~~~--~~~~~~~~ll-~~~l~~H~~~c~wy~~~~~~~~~~w~~~~~~~~~~~~ 301 (628)
+| +.|++|++++.+....... +..+ .....+..++ +.++..+++||++|+...
T Consensus 311 lR----llRvlRilkL~r~~~~l~~-l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~------------------- 366 (514)
T 2r9r_B 311 FR----IMRILRIFKLSRHSKGLQI-LGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEA------------------- 366 (514)
T ss_dssp HH----HHGGGGGGGGGGSCHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHT-------------------
T ss_pred HH----HHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeec-------------------
Confidence 33 3344444444443221111 1111 0011122222 233457778887775420
Q ss_pred CccccccCCCCCCccccccccCCCCCCcccccccccccchhHhhhhcccccCCCchhHHHHHHHHHHHHhhccCCCcccc
Q 006857 302 CTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTS 381 (628)
Q Consensus 302 c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~~~~~giy~~~~~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~ 381 (628)
.. ..+.+..|..|+||+++||||+||||+.|
T Consensus 367 -----------~~--------------------------------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P 397 (514)
T 2r9r_B 367 -----------DE--------------------------------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVP 397 (514)
T ss_dssp -----------TC--------------------------------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCC
T ss_pred -----------cC--------------------------------------CCccccchhhhhheeeeEEEecccCCCCC
Confidence 00 11223457889999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHhhcCCC
Q 006857 382 TFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVE 461 (628)
Q Consensus 382 ~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~ 461 (628)
.+..+++++++++++|++++++.+|.+.+.++....+..+ ++..+..++++.-...|.....+ + ++.+...
T Consensus 398 ~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~~~~~l~--~------~~~~~~~ 468 (514)
T 2r9r_B 398 TTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIPSSPDLK--K------SRSASTI 468 (514)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC-----------------------------------------
T ss_pred CCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCCCccchhHH--h------cccCCCc
Confidence 9999999999999999999999999999888766553322 11112222333333333322211 1 1122333
Q ss_pred HHHHhhcCChhHHHHHHHHHh
Q 006857 462 EEGLLRNLPKDLRRDIKRHLC 482 (628)
Q Consensus 462 e~~ll~~Lp~~Lr~~i~~~l~ 482 (628)
++.-..++.+.++.++.....
T Consensus 469 ~~s~~~el~e~~~~~~~~~~~ 489 (514)
T 2r9r_B 469 SKSDYMEIQEGVNNSNEDFRE 489 (514)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 444556677777766655443
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.73 E-value=2.2e-17 Score=149.87 Aligned_cols=131 Identities=18% Similarity=0.292 Sum_probs=112.9
Q ss_pred cCChhHHHHHHHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeee
Q 006857 468 NLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTG 547 (628)
Q Consensus 468 ~Lp~~Lr~~i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~ 547 (628)
++|+.++.+...+...++++++|+|++++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6888999999999999999999999999999999999999999999999999999999999999999999954 343
Q ss_pred EEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHH
Q 006857 548 FFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSK 613 (628)
Q Consensus 548 ~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~ 613 (628)
.+..+++|++||+.+++.. . +++++++|.++|+++.|++++|.+++.++|.+..+
T Consensus 83 --~~~~~~~G~~fGe~~~l~~-~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 --KLCTMGPGKVFGELAILYN-C--------TRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp --EEEEECTTCEESCHHHHHC-C--------CCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred --EEEEeCCCCEeccHHHHCC-C--------CcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 2799999999999997622 2 25779999999999999999999999999987643
No 9
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.71 E-value=1e-16 Score=149.34 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=111.8
Q ss_pred HHHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecC
Q 006857 477 IKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKA 556 (628)
Q Consensus 477 i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~ 556 (628)
..+....+.++++|+|++++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++...+|++.. +..+++
T Consensus 31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~~~~ 108 (161)
T 3idb_B 31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNYDN 108 (161)
T ss_dssp HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEEEES
T ss_pred HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEEcCC
Confidence 344556789999999999999999999999999999999999999999999999999999998877777766 899999
Q ss_pred CCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHH
Q 006857 557 GDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 612 (628)
Q Consensus 557 Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~ 612 (628)
|++||+.+++. .. +++++++|.++|+++.|++++|.+++.++|.+..
T Consensus 109 G~~fGe~~~~~---~~------~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 109 RGSFGELALMY---NT------PRAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp CCEECGGGGTC---CC------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred CCEechHHHHc---CC------CcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 99999998852 22 2678999999999999999999999999998753
No 10
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.70 E-value=1.7e-16 Score=144.00 Aligned_cols=130 Identities=14% Similarity=0.201 Sum_probs=108.2
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeE-EEEEEecCCCeE
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGF-FNAVYLKAGDFC 560 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~-~~~~~l~~Gd~f 560 (628)
.+.++++|+|++++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ +|++.. .++..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 457889999999999999999999999999999999999999999999999999997633 343311 116889999999
Q ss_pred ehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006857 561 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQ 621 (628)
Q Consensus 561 Ge~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~r~ 621 (628)
|+.+++ .+ .+++++++|.++|+++.|++++|.+++.++|++....++...+.
T Consensus 85 G~~~~~---~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 136 (142)
T 3mdp_A 85 GVSSLI---KP------YHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAA 136 (142)
T ss_dssp CGGGSS---TT------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chHHHc---CC------CCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 999875 22 23677999999999999999999999999999997666666544
No 11
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.69 E-value=1.3e-17 Score=150.91 Aligned_cols=129 Identities=67% Similarity=1.103 Sum_probs=107.6
Q ss_pred HHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehh
Q 006857 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEA 563 (628)
Q Consensus 484 ~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 563 (628)
++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|++....+|++.++.+..+.+|++|||.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 56889999999999999999999999999999999999999999999999999976555666655223399999999999
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHH
Q 006857 564 LLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 612 (628)
Q Consensus 564 ~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~ 612 (628)
++++.+.+.+....+.++++++|.++|+++.|++++|.+++.++|++..
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 8632344333222224678999999999999999999999999997653
No 12
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.69 E-value=3.8e-16 Score=149.65 Aligned_cols=144 Identities=16% Similarity=0.210 Sum_probs=119.8
Q ss_pred HHHHhhcCChhH----HHHHHHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEE
Q 006857 462 EEGLLRNLPKDL----RRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 537 (628)
Q Consensus 462 e~~ll~~Lp~~L----r~~i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~ 537 (628)
+..+.+.++|++ +.+.......+.++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 344455555543 2333345557889999999999999999999999999999999999999999999999999999
Q ss_pred EEEec-CCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHH
Q 006857 538 STTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 616 (628)
Q Consensus 538 v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~ 616 (628)
++..+ +|++.. +..+++|++||+.+++. .. +++++++|.++|+++.|++++|.+++.++|++....++
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~l~-~~--------~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~ 161 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSMID-GM--------PRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLI 161 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHHHH-CC--------CCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHHhC-CC--------CeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHH
Confidence 97754 676655 89999999999999752 11 25779999999999999999999999999998766553
No 13
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.68 E-value=4.5e-16 Score=142.22 Aligned_cols=125 Identities=26% Similarity=0.332 Sum_probs=109.5
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEe
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (628)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ +|++.. +..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 567899999999999999999999999999999999999999999999999999997654 566655 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 562 e~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
+.+++. + .++.++++|.++|+++.|++++|.+++.++|++....++..
T Consensus 82 ~~~~~~---~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~ 129 (149)
T 2pqq_A 82 ELSLFD---P------GPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAV 129 (149)
T ss_dssp GGGGTS---C------EECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHH
T ss_pred hHHhcC---C------CCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHH
Confidence 998752 1 13577999999999999999999999999999875554443
No 14
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.67 E-value=6.4e-16 Score=142.18 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=108.4
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEe
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (628)
.++++++|+|..++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ +|++.. +..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 467999999999999999999999999999999999999999999999999999997643 455544 79999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHHH
Q 006857 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFR 620 (628)
Q Consensus 562 e~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~r 620 (628)
+.+++. + .+.+.++++|.++|+++.|++++|.+++.++|++....++...+
T Consensus 89 ~~~~~~---~-----~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 89 EAMMFM---D-----TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGGGS---S-----CSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHhhcc---C-----CCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 998852 1 12257799999999999999999999999999988666655443
No 15
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.64 E-value=3e-15 Score=143.68 Aligned_cols=124 Identities=11% Similarity=0.094 Sum_probs=107.3
Q ss_pred hHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeE
Q 006857 482 CWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFC 560 (628)
Q Consensus 482 ~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~f 560 (628)
...+++.+|.|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++|
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~ 82 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWL 82 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEE
Confidence 356788899999999999999999999999999999999999999999999999999774 4677765 8999999999
Q ss_pred ehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHH
Q 006857 561 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQL 615 (628)
Q Consensus 561 Ge~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l 615 (628)
||...+.... +++++++|+++|+++.|++++|.+++.++|++....+
T Consensus 83 ge~~~~~~~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 129 (194)
T 3dn7_A 83 SDYMAFQKQQ--------PADFYIQSVENCELLSITYTEQENLFERIPALERYFR 129 (194)
T ss_dssp CCHHHHHHTC--------BCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHH
T ss_pred eehHHHhcCC--------CCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHH
Confidence 9874432222 2567999999999999999999999999998764333
No 16
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.64 E-value=4e-15 Score=145.15 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=103.8
Q ss_pred hhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhh
Q 006857 486 LMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEAL 564 (628)
Q Consensus 486 l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~ 564 (628)
|+++|+|++++++.++.++..++.+.|++|++|+++||+++++|+|.+|.|+++.. .+|++.+ +..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46789999999999999999999999999999999999999999999999999775 4666655 89999999999988
Q ss_pred hhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHH
Q 006857 565 LTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 616 (628)
Q Consensus 565 l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~ 616 (628)
++. .. +++++++|.++|+++.+++++|.+++.++|++....++
T Consensus 79 ~~~-~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~ 121 (216)
T 4ev0_A 79 LLD-EG--------ERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAA 121 (216)
T ss_dssp HHH-CC--------BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred hcC-CC--------CcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHH
Confidence 752 11 25779999999999999999999999999997754443
No 17
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.64 E-value=2.8e-15 Score=138.60 Aligned_cols=117 Identities=17% Similarity=0.251 Sum_probs=104.5
Q ss_pred HHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCe
Q 006857 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF 559 (628)
Q Consensus 480 ~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~ 559 (628)
....++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++. +|+. +..+++|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~~----~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTEE----EEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCEE----EEEecCCCE
Confidence 3456789999999999999999999999999999999999999999999999999999987 3442 788999999
Q ss_pred EehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHH
Q 006857 560 CGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLH 611 (628)
Q Consensus 560 fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~ 611 (628)
||+.+++.. . +++++++|+++|+++.|++++|.+++.++|...
T Consensus 108 fGe~~~~~~-~--------~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~ 150 (154)
T 3pna_A 108 FGELALIYG-T--------PRAATVKAKTNVKLWGIDRDSYRRILMGSTLRK 150 (154)
T ss_dssp ECCHHHHHC-C--------CCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC
T ss_pred eeehHhhcC-C--------CcceEEEECcceEEEEEeHHHHHHHHHhChHHH
Confidence 999988631 1 257799999999999999999999999999765
No 18
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.63 E-value=2.7e-15 Score=135.49 Aligned_cols=120 Identities=28% Similarity=0.446 Sum_probs=105.0
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEeh
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (628)
.+.++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ + ..+++|++||+
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G~ 81 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGE 81 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEECH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEeee
Confidence 578999999999999999999999999999999999999999999999999999997543 1 47899999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHH
Q 006857 563 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 619 (628)
Q Consensus 563 ~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~ 619 (628)
.+++.+ . +++++++|.++|+++.|++++|.+++.++|++....++...
T Consensus 82 ~~~~~~-~--------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~ 129 (138)
T 1vp6_A 82 MALISG-E--------PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTAL 129 (138)
T ss_dssp HHHHHC-C--------CCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHhccC-C--------CceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHH
Confidence 987521 1 25679999999999999999999999999998855555443
No 19
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.63 E-value=2.9e-15 Score=154.10 Aligned_cols=140 Identities=16% Similarity=0.292 Sum_probs=121.0
Q ss_pred HHHhhcCChhHHHHHHHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec
Q 006857 463 EGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY 542 (628)
Q Consensus 463 ~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~ 542 (628)
.....++|+..|.+...++..+.++++++|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++..
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-- 95 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-- 95 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--
Confidence 345568999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred CCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHH
Q 006857 543 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 543 ~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~ 617 (628)
+|+. +..+.+|++|||.+++. ..++++|++|.++|+++.|++++|..++.++|.........
T Consensus 96 ~g~~----~~~~~~G~~fGe~~ll~---------~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~ 157 (299)
T 3shr_A 96 EGVK----LCTMGPGKVFGELAILY---------NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYME 157 (299)
T ss_dssp TTEE----EEEECTTCEESCSGGGT---------TTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEE----EEEeCCCCeeeHhHHhc---------CCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHH
Confidence 3332 78999999999998752 12368899999999999999999999999999765444433
No 20
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.63 E-value=5e-15 Score=146.78 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=111.0
Q ss_pred hHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeE
Q 006857 482 CWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFC 560 (628)
Q Consensus 482 ~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~f 560 (628)
..+.++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++.. .+|++.+ +..+++|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCEe
Confidence 457899999999999999999999999999999999999999999999999999999774 4677655 8999999999
Q ss_pred ehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 561 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 561 Ge~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
|+.+++. .. +++++++|.++|+++.|++++|.+++.++|++....++..
T Consensus 87 G~~~~~~-~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 135 (237)
T 3fx3_A 87 GEAVALR-NT--------PYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATT 135 (237)
T ss_dssp CHHHHHH-TC--------CCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred chHHHhc-CC--------CCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 9999862 11 2577999999999999999999999999999875554443
No 21
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.62 E-value=5.3e-15 Score=146.01 Aligned_cols=125 Identities=18% Similarity=0.240 Sum_probs=108.6
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEe
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (628)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999997754 666655 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 562 e~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
+.+++. + .+++++++|.++|+++.|++++|.+++.++|++....++..
T Consensus 83 ~~~~~~---~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 130 (231)
T 3e97_A 83 ETAVLA---H------QERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEML 130 (231)
T ss_dssp TTTTTC---C------CCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHH
T ss_pred eHHHhC---C------CCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 998752 1 23678999999999999999999999999999875554433
No 22
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.61 E-value=5e-15 Score=145.78 Aligned_cols=124 Identities=22% Similarity=0.374 Sum_probs=108.8
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEe
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (628)
.+.++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 457899999999999999999999999999999999999999999999999999997754 566655 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHH
Q 006857 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 562 e~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~ 617 (628)
+.+++. +. +++++++|.++|+++.|++++|.+++.++|++....++.
T Consensus 83 ~~~~~~---~~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 129 (227)
T 3d0s_A 83 ELSIFD---PG------PRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRV 129 (227)
T ss_dssp CHHHHS---CS------CCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHH
T ss_pred eHHHcC---CC------CceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHH
Confidence 998752 21 257799999999999999999999999999876544443
No 23
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.60 E-value=9.6e-15 Score=144.57 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=110.1
Q ss_pred hHHHhhccccccCCcHHHHHHHHhc--cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEE-ecCCeeeEEEEEEecCCC
Q 006857 482 CWDLLMRVPMFEKMDDQLLDAMCDH--LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGD 558 (628)
Q Consensus 482 ~~~~l~~v~lF~~l~~~~l~~l~~~--l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~-~~~g~~~~~~~~~l~~Gd 558 (628)
..+.++++|+|.+++++.++.++.. ++.+.|++|++|+++||+++.+|+|.+|.|+++. ..+|++.+ +..+++|+
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G~ 93 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAPY 93 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESSE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCCC
Confidence 3567899999999999999999998 9999999999999999999999999999999976 44566655 89999999
Q ss_pred eEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 559 FCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 559 ~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
+||+.+++. + .+.++++++|+++|+++.|++++|.+++.++|++....++..
T Consensus 94 ~fG~~~~~~---~-----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 145 (232)
T 1zyb_A 94 LIEPQSLFG---M-----NTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIV 145 (232)
T ss_dssp EECGGGGSS---S-----CCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHH
T ss_pred eeeehHHhC---C-----CCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHH
Confidence 999998752 1 122577999999999999999999999999999876555443
No 24
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.60 E-value=1.6e-14 Score=142.31 Aligned_cols=126 Identities=16% Similarity=0.198 Sum_probs=99.2
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEe
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fG 561 (628)
...+++.++|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 45788999999999999999999999999999999999999999999999999999764 4677655 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHh-----HHHHHHHHHHH
Q 006857 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQF-----RRLHSKQLQHA 618 (628)
Q Consensus 562 e~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~-----p~l~~~~l~~~ 618 (628)
+.+++.. .++++++++|.++|+++.|++++|.+++.++ |++....++..
T Consensus 88 ~~~~~~~--------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l 141 (230)
T 3iwz_A 88 EMGLFIE--------SDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQL 141 (230)
T ss_dssp CGGGTSC--------CSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHH
T ss_pred ehhhhcC--------CCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 9988521 1235779999999999999999999999999 98765444433
No 25
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.60 E-value=1.6e-14 Score=141.33 Aligned_cols=122 Identities=13% Similarity=0.121 Sum_probs=105.8
Q ss_pred HHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCe--E
Q 006857 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDF--C 560 (628)
Q Consensus 484 ~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~--f 560 (628)
++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++.. .+|++.+ +..+++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 5788999999999999999999999999999999999999999999999999999764 4577655 899999999 6
Q ss_pred ehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHH
Q 006857 561 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 616 (628)
Q Consensus 561 Ge~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~ 616 (628)
|+.+++ .+. +++++++|.++|+++.+++++|.+++.++|++....++
T Consensus 81 g~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 127 (220)
T 3dv8_A 81 SASCIM---RSI------QFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNE 127 (220)
T ss_dssp GGGGGC---TTC------CCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHh---CCC------CCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHH
Confidence 888774 222 25779999999999999999999999999997754443
No 26
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.57 E-value=2.2e-14 Score=149.94 Aligned_cols=125 Identities=14% Similarity=0.232 Sum_probs=109.3
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEe
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (628)
.+.++++|+|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++ . +..+++|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 468899999999999999999999999999999999999999999999999999997754 4544 3 79999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHHH
Q 006857 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFR 620 (628)
Q Consensus 562 e~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~r 620 (628)
|.+++.. . +++++++|+++|+++.|++++|.+++ ++|.+....++....
T Consensus 89 e~~l~~~-~--------~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~ 137 (333)
T 4ava_A 89 EIALLRD-S--------PRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQ 137 (333)
T ss_dssp HHHHHHT-C--------BCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHH
T ss_pred HHHhcCC-C--------CceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHH
Confidence 9988632 1 36789999999999999999999999 999988665554433
No 27
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.57 E-value=5.5e-15 Score=145.26 Aligned_cols=125 Identities=16% Similarity=0.212 Sum_probs=108.2
Q ss_pred HHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEe
Q 006857 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 483 ~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fG 561 (628)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 46789999999999999999999999999999999999999999999999999999763 4566655 79999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHH
Q 006857 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 562 e~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~ 617 (628)
+.+++. + .+.++++++|.++|+++.+++++|.+++.++|++....++.
T Consensus 86 ~~~~~~---~-----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 133 (227)
T 3dkw_A 86 EAMMFM---D-----TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAK 133 (227)
T ss_dssp CTTTTT---T-----CSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHH
T ss_pred eHHhcC---C-----CCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHH
Confidence 998741 1 12257799999999999999999999999999876544443
No 28
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.57 E-value=2.8e-14 Score=140.92 Aligned_cols=121 Identities=12% Similarity=0.219 Sum_probs=103.1
Q ss_pred hhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhh
Q 006857 486 LMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEAL 564 (628)
Q Consensus 486 l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~ 564 (628)
...+|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++.. .+|++.+ +..+++|++||+.+
T Consensus 12 ~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~ 89 (232)
T 2gau_A 12 HLLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRP 89 (232)
T ss_dssp GGSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHH
T ss_pred ccccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeeh
Confidence 34689999999999999999999999999999999999999999999999999764 3466655 89999999999998
Q ss_pred hhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHH
Q 006857 565 LTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 565 l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~ 617 (628)
++. .. +++++++|.++|+++.|++++|.+++.++|++....++.
T Consensus 90 ~~~-~~--------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 133 (232)
T 2gau_A 90 YFA-EE--------TCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKA 133 (232)
T ss_dssp HHH-TS--------CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred hhC-CC--------CcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 752 11 257799999999999999999999999999977544443
No 29
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.56 E-value=9.9e-15 Score=134.70 Aligned_cols=63 Identities=10% Similarity=0.295 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006857 357 PKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRL 419 (628)
Q Consensus 357 ~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~ 419 (628)
...|..|+||++.|+|||||||++|.+..+++++++++++|+.++|+.+|.+.+.+.+...+.
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999999999999999999999999999998765443
No 30
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.56 E-value=1.9e-15 Score=136.23 Aligned_cols=123 Identities=12% Similarity=0.227 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHhHHHhhccccccCCcHHHHHHHHhccceEEeC-CCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEE
Q 006857 471 KDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYT-EKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFF 549 (628)
Q Consensus 471 ~~Lr~~i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~-~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~ 549 (628)
|+.|.+-......++++++++|..++++.++.++..++.+.|+ +|++|+++|++++.+|||.+|.|+++. .+|++
T Consensus 3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~--- 78 (134)
T 2d93_A 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV--- 78 (134)
T ss_dssp CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE---
T ss_pred hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE---
Confidence 3444444444556789999999999999999999999999999 999999999999999999999999986 44443
Q ss_pred EEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEE-EEcceEEEEEeeHHHHHHHHHHhH
Q 006857 550 NAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTV-QALTEVEAFSLMADDLKSVASQFR 608 (628)
Q Consensus 550 ~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv-~A~t~~ell~L~~~~f~~ll~~~p 608 (628)
..+++|++||+.+++ .. .++.+++ +|.++|+++.|++++|.+++.+.+
T Consensus 79 --~~l~~G~~fG~~~~~---~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 --ENLFMGNSFGITPTL---DK------QYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp --EEECTTCEESCCSSS---CC------EECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred --EEecCCCccChhHhc---CC------CcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 458999999999874 21 1245678 999999999999999999887654
No 31
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.55 E-value=1.8e-14 Score=148.18 Aligned_cols=128 Identities=22% Similarity=0.376 Sum_probs=110.8
Q ss_pred HHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec--CCeeeEEEEEEecCC
Q 006857 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY--GGRTGFFNAVYLKAG 557 (628)
Q Consensus 480 ~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~--~g~~~~~~~~~l~~G 557 (628)
.....+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++... +|++.. +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678899999999999999999999999999999999999999999999999999998765 566544 8999999
Q ss_pred CeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 558 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 558 d~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
++|||.+++. . .+++++++|.++|+++.|++++|.+++.++|++..+.++..
T Consensus 231 ~~fGe~~ll~---~------~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l 282 (299)
T 3shr_A 231 DWFGEKALQG---E------DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDA 282 (299)
T ss_dssp CEECGGGGSS---S------EECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CEeChHHHhC---C------CCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHH
Confidence 9999998752 1 23678999999999999999999999999988654444433
No 32
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.55 E-value=8.5e-14 Score=135.01 Aligned_cols=117 Identities=19% Similarity=0.244 Sum_probs=98.5
Q ss_pred ccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhhhhhh
Q 006857 490 PMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWA 568 (628)
Q Consensus 490 ~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~ 568 (628)
++++.++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. .+|++.+ +..+++|++||+.+++..
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~~~ 79 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFEE 79 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTTST
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHhcC
Confidence 4667899999999999999999999999999999999999999999999775 5677655 899999999999987522
Q ss_pred cCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHH
Q 006857 569 LDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 616 (628)
Q Consensus 569 l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~ 616 (628)
. ++++++++|.++|+++.+++++|.+++.++|++....++
T Consensus 80 ~--------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~ 119 (210)
T 3ryp_A 80 G--------QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSA 119 (210)
T ss_dssp T--------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHH
T ss_pred C--------CCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHH
Confidence 1 135779999999999999999999999999997754443
No 33
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.55 E-value=9.3e-14 Score=142.02 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=110.0
Q ss_pred HHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCC
Q 006857 479 RHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGD 558 (628)
Q Consensus 479 ~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd 558 (628)
.+...+.++++|+|++++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+. +..+++|+
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~~----~~~l~~G~ 107 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGG 107 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTEE----EEEECTTC
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCeE----EEEcCCCC
Confidence 34567889999999999999999999999999999999999999999999999999999987 3432 78999999
Q ss_pred eEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHH
Q 006857 559 FCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 619 (628)
Q Consensus 559 ~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~ 619 (628)
+|||.+++ .+ .+++++++|.++|+++.|++++|..++.++|.+..+.+....
T Consensus 108 ~fGe~~l~---~~------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 159 (291)
T 2qcs_B 108 SFGELALI---YG------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFL 159 (291)
T ss_dssp EECGGGGT---CC------CBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHh---cC------CCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHH
Confidence 99998875 11 236889999999999999999999999999988765555443
No 34
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.54 E-value=8.6e-14 Score=142.29 Aligned_cols=127 Identities=20% Similarity=0.275 Sum_probs=109.4
Q ss_pred HhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec--CCeeeEEEEEEecCCC
Q 006857 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY--GGRTGFFNAVYLKAGD 558 (628)
Q Consensus 481 l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~--~g~~~~~~~~~l~~Gd 558 (628)
+...+++++++|..++++.+..++..++...|++|++|+++|++++.+|+|.+|.|++.... ++++.. +..+++|+
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G~ 231 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPSD 231 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTTC
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCCC
Confidence 34567788999999999999999999999999999999999999999999999999997643 333333 89999999
Q ss_pred eEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 559 FCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 559 ~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
+|||.+++. + .+++++++|.++|+++.|++++|.+++.++|++..+.++..
T Consensus 232 ~fGe~~ll~---~------~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 232 YFGEIALLM---N------RPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp EECSGGGTC---C------CCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred EecHHHHcC---C------CCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 999998852 1 23688999999999999999999999999999886665544
No 35
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.54 E-value=4.8e-14 Score=140.08 Aligned_cols=120 Identities=21% Similarity=0.236 Sum_probs=106.6
Q ss_pred HHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCe
Q 006857 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF 559 (628)
Q Consensus 480 ~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~ 559 (628)
.+...+++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+++ . +..+++|++
T Consensus 121 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~--~~~l~~g~~ 195 (246)
T 3of1_A 121 LMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---V--INKLKDHDY 195 (246)
T ss_dssp HHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---E--EEEEETTCE
T ss_pred HHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---e--EEEcCCCCc
Confidence 34456788899999999999999999999999999999999999999999999999999876554 2 799999999
Q ss_pred EehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHH
Q 006857 560 CGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSK 613 (628)
Q Consensus 560 fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~ 613 (628)
|||.+++. . .+|+++++|.++|+++.|++++|.+++..+|++..+
T Consensus 196 fGe~~~~~-~--------~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 196 FGEVALLN-D--------LPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLKL 240 (246)
T ss_dssp ECHHHHHH-T--------CBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHHH
T ss_pred ccHHHHhC-C--------CCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHhc
Confidence 99999863 1 136789999999999999999999999999987643
No 36
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.53 E-value=3e-14 Score=139.55 Aligned_cols=116 Identities=12% Similarity=0.212 Sum_probs=104.1
Q ss_pred HHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehh
Q 006857 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEA 563 (628)
Q Consensus 484 ~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 563 (628)
.+++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++...+|++.+ +..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 46788999999999999999999999999999999999999999999999999997666777765 899999999998
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHH
Q 006857 564 LLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 564 ~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~ 617 (628)
+ ++++++|.++|+++.|++++|.+++.++|++....++.
T Consensus 81 -------~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 119 (220)
T 2fmy_A 81 -------H--------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKV 119 (220)
T ss_dssp -------C--------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHH
T ss_pred -------c--------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHH
Confidence 2 46699999999999999999999999999976544443
No 37
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.53 E-value=1.1e-13 Score=149.33 Aligned_cols=123 Identities=14% Similarity=0.187 Sum_probs=110.7
Q ss_pred HHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCC
Q 006857 478 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAG 557 (628)
Q Consensus 478 ~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~G 557 (628)
..+...+.++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++...+|++.. +..+.+|
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~l~~G 216 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNYDNR 216 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEEEESC
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEEecCC
Confidence 34566789999999999999999999999999999999999999999999999999999998877777765 8999999
Q ss_pred CeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHH
Q 006857 558 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLH 611 (628)
Q Consensus 558 d~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~ 611 (628)
++|||.+++. . .++++|++|.++|+++.|++++|..++.++|...
T Consensus 217 ~~fGe~all~---~------~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~ 261 (416)
T 3tnp_B 217 GSFGELALMY---N------TPKAATITATSPGALWGLDRVTFRRIIVKNNAKK 261 (416)
T ss_dssp CEECGGGGTS---C------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CEEeeHHHhc---C------CCcccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence 9999998852 1 2368899999999999999999999999998764
No 38
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.7e-14 Score=140.94 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=104.3
Q ss_pred hHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 482 CWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 482 ~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
..+.++++|+|++++++.++.++..++.+.|++|++|+++||+++++|+|.+|.|+++. +++. +..+++|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 35789999999999999999999999999999999999999999999999999999975 3333 68999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHH
Q 006857 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQL 615 (628)
Q Consensus 562 e~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l 615 (628)
|.+++.+ . +++++++|.++|+++.|++++|..++.++|.......
T Consensus 79 e~~l~~~-~--------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (246)
T 3of1_A 79 ELALMYN-S--------PRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMY 123 (246)
T ss_dssp HHHHHHT-C--------CCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHS
T ss_pred hhHHhcC-C--------CCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHH
Confidence 9988632 1 2678999999999999999999999998886554433
No 39
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.51 E-value=3e-13 Score=130.80 Aligned_cols=116 Identities=25% Similarity=0.307 Sum_probs=97.5
Q ss_pred CcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEehhhhhhhcCCCC
Q 006857 495 MDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQS 573 (628)
Q Consensus 495 l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~ 573 (628)
|+++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.+ +..+++|++||+.+++....
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~~~~~--- 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLFEKEG--- 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTCC------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHhcCCC---
Confidence 588999999999999999999999999999999999999999997644 577655 89999999999998752211
Q ss_pred CCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHH
Q 006857 574 SSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 574 ~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~ 617 (628)
..++++++++|+++|+++.|++++|.+++.++|.+....++.
T Consensus 76 --~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 117 (207)
T 2oz6_A 76 --SEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQ 117 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred --CCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHH
Confidence 000357799999999999999999999999999977544443
No 40
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.50 E-value=3.1e-13 Score=136.27 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=96.5
Q ss_pred cCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhhhhhhcCC
Q 006857 493 EKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDP 571 (628)
Q Consensus 493 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~ 571 (628)
..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.+++...
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~~~~-- 130 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFEEG-- 130 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTTSTT--
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHhCCC--
Confidence 4589999999999999999999999999999999999999999999875 4676655 8999999999999875221
Q ss_pred CCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHH
Q 006857 572 QSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 616 (628)
Q Consensus 572 ~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~ 616 (628)
++++++++|+++|+++.|++++|.+++.++|++....++
T Consensus 131 ------~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~ 169 (260)
T 3kcc_A 131 ------QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSA 169 (260)
T ss_dssp ------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHH
T ss_pred ------CCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHH
Confidence 136779999999999999999999999999987654443
No 41
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.49 E-value=6.2e-14 Score=137.61 Aligned_cols=114 Identities=12% Similarity=0.055 Sum_probs=101.4
Q ss_pred HhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhh
Q 006857 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEAL 564 (628)
Q Consensus 485 ~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ 564 (628)
+++++|+|.+++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++...+|++.+ +..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 3678999999999999999999999999999999999999999999999999997666777765 89999999999
Q ss_pred hhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHH
Q 006857 565 LTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 616 (628)
Q Consensus 565 l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~ 616 (628)
. +++++++|+++|+++.|++++|.+++.++|.+....++
T Consensus 76 -----~--------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~ 114 (222)
T 1ft9_A 76 -----M--------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIA 114 (222)
T ss_dssp -----S--------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHH
T ss_pred -----C--------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHH
Confidence 1 15679999999999999999999999999986644443
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.49 E-value=1.9e-13 Score=145.79 Aligned_cols=126 Identities=16% Similarity=0.228 Sum_probs=110.1
Q ss_pred HHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCC
Q 006857 479 RHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGD 558 (628)
Q Consensus 479 ~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd 558 (628)
++...+.++++++|++++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+. +..+++|+
T Consensus 125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~~----v~~l~~G~ 198 (381)
T 4din_B 125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGEW----VTNISEGG 198 (381)
T ss_dssp HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTEE----EEEEESSC
T ss_pred HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCeE----eeeCCCCC
Confidence 34567889999999999999999999999999999999999999999999999999999986 3432 78899999
Q ss_pred eEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHH
Q 006857 559 FCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 619 (628)
Q Consensus 559 ~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~ 619 (628)
+|||.+++. . .++++|++|.++|+++.|++++|..++.++|....+.+....
T Consensus 199 ~fGe~all~---~------~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L 250 (381)
T 4din_B 199 SFGELALIY---G------TPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFL 250 (381)
T ss_dssp CBCGGGGTS---C------CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEchHHhc---C------CCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHh
Confidence 999998852 1 236789999999999999999999999999987765555443
No 43
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=147.76 Aligned_cols=128 Identities=18% Similarity=0.263 Sum_probs=110.7
Q ss_pred HHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec--CCeeeEEEEEEecCC
Q 006857 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY--GGRTGFFNAVYLKAG 557 (628)
Q Consensus 480 ~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~--~g~~~~~~~~~l~~G 557 (628)
.++..+++++++|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +++.. .+..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~--~v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYV--EVGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCC--EEEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceE--EEEEeCCC
Confidence 345577888999999999999999999999999999999999999999999999999998754 33333 37899999
Q ss_pred CeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 558 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 558 d~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
++|||.+++. . .+|+++++|.++|+++.|++++|.+++..+|++..+.+++.
T Consensus 322 d~fGe~all~---~------~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 322 DYFGEIALLL---N------RPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp CEECTTGGGS---C------CBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred CEechHHHhC---C------CCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999862 1 23678999999999999999999999999999886666544
No 44
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.48 E-value=2.2e-13 Score=132.93 Aligned_cols=120 Identities=15% Similarity=0.172 Sum_probs=96.6
Q ss_pred cccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhhhhh
Q 006857 489 VPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTW 567 (628)
Q Consensus 489 v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~ 567 (628)
-|.|+..++...+.+...++.+.|++|++|+++|++++.+|+|.+|.|+++.. .+|++.+ +..+++|++||+.+++.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~~ 81 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIFS 81 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTTS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHhc
Confidence 47888899999999999999999999999999999999999999999999764 4677655 89999999999998752
Q ss_pred hcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 568 ALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 568 ~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
. .+++.++++|+++|+++.|++++|.+++.++|++....++..
T Consensus 82 ~--------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 124 (213)
T 1o5l_A 82 S--------EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDV 124 (213)
T ss_dssp S--------SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--------CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 1 113577999999999999999999999999999875555544
No 45
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.46 E-value=7.1e-14 Score=126.62 Aligned_cols=92 Identities=7% Similarity=0.184 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Q 006857 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLP 439 (628)
Q Consensus 360 Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp 439 (628)
|..|+||++.|+|||||||++|.+..|++++++++++|++++|+++|.+++.+.+...+..+.+...+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 77899999999999999999999999999999999999999999999999988765443333222222222233344555
Q ss_pred HhHHHHHHHHHH
Q 006857 440 ENLRDRIRRYEQ 451 (628)
Q Consensus 440 ~~L~~rV~~y~~ 451 (628)
++....+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 46
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.45 E-value=1.4e-13 Score=148.43 Aligned_cols=126 Identities=12% Similarity=0.211 Sum_probs=105.6
Q ss_pred HhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecC-------CeeeEEEEEE
Q 006857 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYG-------GRTGFFNAVY 553 (628)
Q Consensus 481 l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~-------g~~~~~~~~~ 553 (628)
++..+++++++|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++.... |++.. +..
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~ 341 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IAR 341 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEE
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEE
Confidence 345678889999999999999999999999999999999999999999999999999976443 55544 899
Q ss_pred ecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHH
Q 006857 554 LKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 554 l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~ 617 (628)
+++|++|||.+++. . .+++++++|.++|+++.|++++|.+++..+|++..+.++.
T Consensus 342 l~~G~~fGE~all~---~------~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~ 396 (416)
T 3tnp_B 342 CFRGQYFGELALVT---N------KPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIAT 396 (416)
T ss_dssp ECTTCEESGGGGTC---C------SCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC---
T ss_pred eCCCCEecHHHHhC---C------CCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999852 2 2368899999999999999999999999999977554443
No 47
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.45 E-value=4.1e-13 Score=123.50 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----hHHHHHHHHHHHHHH
Q 006857 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQK------YLES----TTVRLEEMRVKRQDA 429 (628)
Q Consensus 360 Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~------~l~~----~~~~~~~~~~~~~~~ 429 (628)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++++.. +.+. .+.+..+.+.+++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999986 3333 244555666778899
Q ss_pred HHHHHhcCCCHhHHHH
Q 006857 430 EQWMSHRMLPENLRDR 445 (628)
Q Consensus 430 ~~~m~~~~lp~~L~~r 445 (628)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 48
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.44 E-value=6e-13 Score=145.69 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=114.7
Q ss_pred CChhHHHHHHHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCe--
Q 006857 469 LPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGR-- 545 (628)
Q Consensus 469 Lp~~Lr~~i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~-- 545 (628)
.|+..|.+...+...+.++++++|++++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|+
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 56777777777888899999999999999999999999999999999999999999999999999999998744 443
Q ss_pred eeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHH
Q 006857 546 TGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLH 611 (628)
Q Consensus 546 ~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~ 611 (628)
+.. +..+++|++|||.+ +.+ .+++++++|.++|+++.|++++|..++.++|++.
T Consensus 107 ~~~--~~~~~~G~~fGe~~-l~~---------~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~ 160 (469)
T 1o7f_A 107 AVT--ICTLGIGTAFGESI-LDN---------TPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (469)
T ss_dssp CEE--EEEECTTCEECGGG-GGT---------CBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGT
T ss_pred ceE--EEEccCCCCcchhh-hCC---------CCccceEEEccceeEEEEcHHHHHHHHHhCHHHH
Confidence 233 89999999999987 421 1367899999999999999999999999999743
No 49
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.43 E-value=6.6e-13 Score=117.76 Aligned_cols=60 Identities=10% Similarity=0.310 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006857 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 417 (628)
Q Consensus 358 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~ 417 (628)
..|..|+||++.|+||+||||++|.+..+++++++++++|+.++++.+|.+++.+++...
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999999999986543
No 50
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.42 E-value=7.3e-13 Score=144.99 Aligned_cols=122 Identities=10% Similarity=0.180 Sum_probs=102.4
Q ss_pred HhHHHhhccccccCCcHHHHHHHHhccceE-EeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCe
Q 006857 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPV-LYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF 559 (628)
Q Consensus 481 l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~-~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~ 559 (628)
...+.++++|+|.+++++.+..++..+... .|++|++|+++||+++.+|||.+|.|+++..+.+ . +..+++|++
T Consensus 334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~---~--~~~l~~G~~ 408 (469)
T 1o7f_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG---V--VCTLHEGDD 408 (469)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTE---E--EEEEETTCE
T ss_pred HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCe---e--EEEecCCCE
Confidence 346779999999999999999999999854 8999999999999999999999999999874332 2 799999999
Q ss_pred EehhhhhhhcCCCCCCCCCCcccEEEEcc-eEEEEEeeHHHHHHHHHHhHHHHHHHHH
Q 006857 560 CGEALLTWALDPQSSSNRPLSTRTVQALT-EVEAFSLMADDLKSVASQFRRLHSKQLQ 616 (628)
Q Consensus 560 fGe~~l~~~l~~~~~~~~~~r~~tv~A~t-~~ell~L~~~~f~~ll~~~p~l~~~~l~ 616 (628)
|||.+++ .. .++++|++|.+ +|+++.|++++|.+++.++|.+..+..+
T Consensus 409 fGe~~ll---~~------~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e 457 (469)
T 1o7f_A 409 FGKLALV---ND------APRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 457 (469)
T ss_dssp ECGGGGT---CC------SCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC------
T ss_pred EEEehhh---cC------CCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHh
Confidence 9999885 21 23688999998 6999999999999999999997754433
No 51
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.41 E-value=1e-12 Score=131.31 Aligned_cols=118 Identities=11% Similarity=0.111 Sum_probs=100.8
Q ss_pred hhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhh
Q 006857 486 LMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEAL 564 (628)
Q Consensus 486 l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~ 564 (628)
+.+...+..++++.++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++.. .+|++.+ +..+++|++||+
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~-- 86 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK-- 86 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC--
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee--
Confidence 44444458999999999999999999999999999999999999999999999775 5677765 899999999999
Q ss_pred hhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHH
Q 006857 565 LTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 565 l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~ 617 (628)
++ . .. ++++++|+++|+++.+++++|.+++.++|++....++.
T Consensus 87 ~l---~------~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~ 129 (250)
T 3e6c_C 87 LY---P------TG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKN 129 (250)
T ss_dssp CS---C------CS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHH
T ss_pred ec---C------CC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHH
Confidence 32 1 12 57799999999999999999999999999977554443
No 52
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.34 E-value=1.2e-11 Score=123.05 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=94.3
Q ss_pred HHHHHHHHhccc---eEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhhhhhhcCCC
Q 006857 497 DQLLDAMCDHLK---PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQ 572 (628)
Q Consensus 497 ~~~l~~l~~~l~---~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~ 572 (628)
++.++.+..... .+.|++|++|+++|++++.+|+|.+|.|+++.. .+|++.+ +..+++|++||+.+++. ..
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~~---~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLLT---GN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHHS---SC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHhC---CC
Confidence 678888888888 999999999999999999999999999999764 4677655 89999999999998752 11
Q ss_pred CCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHH
Q 006857 573 SSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (628)
Q Consensus 573 ~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~ 617 (628)
+. .+.++++|+++|+++.|++++|.+++.++|++....++.
T Consensus 105 ~~----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~ 145 (243)
T 3la7_A 105 KS----DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRG 145 (243)
T ss_dssp CS----BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHH
T ss_pred CC----cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHH
Confidence 10 145799999999999999999999999999977554443
No 53
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.34 E-value=1.6e-11 Score=121.77 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=92.8
Q ss_pred cCCcHHHHHHHHh--ccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhhhhhhc
Q 006857 493 EKMDDQLLDAMCD--HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWAL 569 (628)
Q Consensus 493 ~~l~~~~l~~l~~--~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l 569 (628)
++++++.++.++. .++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+ +|++||+.+++...
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~~~~ 78 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFIDTE 78 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCTTTC
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhhcCC
Confidence 3678899999885 599999999999999999999999999999999764 4677765 7788 99999999875211
Q ss_pred CCCCCCCCCCcccEEEEc-ceEEEEEeeHHHHHHHHHHhHHHHHHHHHHH
Q 006857 570 DPQSSSNRPLSTRTVQAL-TEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (628)
Q Consensus 570 ~~~~~~~~~~r~~tv~A~-t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~ 618 (628)
+. ++.+++.|+ ++|+++.|++++|.+++.++|++....++..
T Consensus 79 -~~------~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 121 (238)
T 2bgc_A 79 -TS------VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTL 121 (238)
T ss_dssp -CB------SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -Cc------CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 10 024577787 5999999999999999999999775554433
No 54
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.34 E-value=8.9e-12 Score=113.29 Aligned_cols=60 Identities=12% Similarity=0.362 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006857 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 417 (628)
Q Consensus 358 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~ 417 (628)
..|..|+||++.|+|||||||++|.+..+++++++.+++|+++++++++.+...+.+...
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999988765443
No 55
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.32 E-value=1.1e-11 Score=148.15 Aligned_cols=120 Identities=19% Similarity=0.207 Sum_probs=103.6
Q ss_pred HHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec---CCeeeEEEEEEecC
Q 006857 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY---GGRTGFFNAVYLKA 556 (628)
Q Consensus 480 ~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~---~g~~~~~~~~~l~~ 556 (628)
++....|+++++|+++++..+.+||.+++.+.+++|++|++|||+++++|+|.+|.|.++..+ ++.+. .+..+++
T Consensus 38 ~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~--~v~~l~~ 115 (999)
T 4f7z_A 38 DIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAV--TICTLGI 115 (999)
T ss_dssp HHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCE--EEEEEET
T ss_pred HHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCce--eEEEecC
Confidence 344577999999999999999999999999999999999999999999999999999997643 22232 3789999
Q ss_pred CCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHH
Q 006857 557 GDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLH 611 (628)
Q Consensus 557 Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~ 611 (628)
|+.||| +++.+ .+|++|++|.++|+++.|++++|+.++.++|+..
T Consensus 116 G~sFGE-all~n---------~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 116 GTAFGE-SILDN---------TPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp TCEECG-GGGGT---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred Ccchhh-hhccC---------CCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 999999 55321 2378999999999999999999999999999754
No 56
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.29 E-value=9.6e-12 Score=141.99 Aligned_cols=133 Identities=11% Similarity=0.156 Sum_probs=110.0
Q ss_pred HHHhhcCChhHHHHHHHHHhHHHhhccccccCCcHHHHHHHHhccc-eEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe
Q 006857 463 EGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLK-PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT 541 (628)
Q Consensus 463 ~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~-~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~ 541 (628)
..++... +..|.+.......+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|+|.+|.|+++..
T Consensus 12 r~iL~k~-p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKP-PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSC-GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCC-hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 3455443 33444444445578899999999999999999999998 689999999999999999999999999999875
Q ss_pred cCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcc-eEEEEEeeHHHHHHHHHHhHHH
Q 006857 542 YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT-EVEAFSLMADDLKSVASQFRRL 610 (628)
Q Consensus 542 ~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t-~~ell~L~~~~f~~ll~~~p~l 610 (628)
+ . .+ +..+++|++|||.+++. .. +++++++|.+ +|+++.|++++|.+++.++|.+
T Consensus 91 g-~--~i--l~~l~~Gd~fGe~al~~-~~--------~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 G-K--GV--VCTLHEGDDFGKLALVN-DA--------PRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp T-T--EE--EEEEETTCEECHHHHHH-TC--------BCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred C-C--EE--EEEeCCCCEeehHHHhC-CC--------CceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 3 2 23 89999999999998862 11 2577999999 5999999999999999988875
No 57
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.23 E-value=6.8e-11 Score=141.33 Aligned_cols=113 Identities=11% Similarity=0.186 Sum_probs=98.0
Q ss_pred HhHHHhhccccccCCcHHHHHHHHhccceEE-eCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCe
Q 006857 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVL-YTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF 559 (628)
Q Consensus 481 l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~-~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~ 559 (628)
...+.+.++|.|++++......++..+.... +++|++|++|||.++.+|||.+|.|+++...++. +..+++||+
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd~ 408 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGDD 408 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTCE
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCCc
Confidence 3467789999999999999999999999765 5789999999999999999999999998754432 789999999
Q ss_pred EehhhhhhhcCCCCCCCCCCcccEEEEcce-EEEEEeeHHHHHHHHHHh
Q 006857 560 CGEALLTWALDPQSSSNRPLSTRTVQALTE-VEAFSLMADDLKSVASQF 607 (628)
Q Consensus 560 fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~-~ell~L~~~~f~~ll~~~ 607 (628)
|||.+++ . ..+|.+|++|.++ |+++.+++++|.+++.+-
T Consensus 409 FGElALL---~------~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 409 FGKLALV---N------DAPRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp ECGGGGT---C------SCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred ccchhhc---c------CCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 9999985 2 2247889999985 999999999999998764
No 58
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.16 E-value=1.3e-10 Score=118.68 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHhhccCCC-ccc-cCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006857 358 KKFFYCFWWGLRNLSSLGQN-LKT-STFVGE----VFFAIFISISGLVLFALLIGNMQKYLESTTV 417 (628)
Q Consensus 358 ~~Y~~slyw~l~tlttvGyg-d~~-~~~~~E----~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~ 417 (628)
..+..|+||+++++||+||| |+. |.+... ..|++++++.|.++.+..+|.+.+.++....
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44668999999999999999 985 665543 8899999999999999999999988875443
No 59
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.13 E-value=2.8e-10 Score=109.07 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=69.4
Q ss_pred EEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcc
Q 006857 510 VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT 588 (628)
Q Consensus 510 ~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t 588 (628)
+.|++|++|+++|++++.+|+|.+|.|+++.. .+|++.+ +..+++|++||+ +++ ... +++++++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~~---~~~------~~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EAL---EGK------AYRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GGG---TCS------BCSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hhh---CCC------CceeEEEECC
Confidence 57999999999999999999999999999764 4566655 899999999999 875 221 3578999999
Q ss_pred eEEEEEeeHHHHH
Q 006857 589 EVEAFSLMADDLK 601 (628)
Q Consensus 589 ~~ell~L~~~~f~ 601 (628)
+|+++.|++++|.
T Consensus 70 ~~~v~~i~~~~~~ 82 (195)
T 3b02_A 70 EAVVQGLEPRAMD 82 (195)
T ss_dssp SEEEEEECGGGCC
T ss_pred cEEEEEEcHHHcC
Confidence 9999999999997
No 60
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.10 E-value=3.3e-11 Score=103.47 Aligned_cols=59 Identities=14% Similarity=0.263 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006857 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 417 (628)
Q Consensus 359 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~ 417 (628)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+.+++++++.+.+.+.+...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999999999999998876543
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.06 E-value=6.1e-10 Score=97.28 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006857 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 417 (628)
Q Consensus 360 Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~ 417 (628)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++.+.+.++....
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 107 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 107 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999998865443
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.05 E-value=1.3e-09 Score=92.30 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006857 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLES 414 (628)
Q Consensus 360 Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~ 414 (628)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6789999999999999999999999999999999999999999999999998874
No 63
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.00 E-value=1e-09 Score=105.66 Aligned_cols=86 Identities=19% Similarity=0.199 Sum_probs=69.6
Q ss_pred HHhccceEEeCCCCeEeccCCCc--CeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCC
Q 006857 503 MCDHLKPVLYTEKSFIVREGDPV--EEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPL 579 (628)
Q Consensus 503 l~~~l~~~~~~~ge~I~~eGd~~--~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~ 579 (628)
+...++.+.|++|++|+++||++ +.+|+|.+|.|+++.. .+|++.+ +..+++|++||+ +++. .. +
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l~-~~--------~ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EALF-GQ--------E 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHHH-TC--------C
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhcC-CC--------C
Confidence 34567889999999999999999 9999999999999764 4677655 899999999999 6642 11 2
Q ss_pred cccEEEEcceEEEEEeeHHHHH
Q 006857 580 STRTVQALTEVEAFSLMADDLK 601 (628)
Q Consensus 580 r~~tv~A~t~~ell~L~~~~f~ 601 (628)
++++++|+++|+++.+ +++|.
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC
T ss_pred cceEEEEcccEEEEEE-hHhcC
Confidence 5679999999999999 88875
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.95 E-value=1.4e-09 Score=89.06 Aligned_cols=54 Identities=13% Similarity=0.377 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006857 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYL 412 (628)
Q Consensus 359 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l 412 (628)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999998875
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.95 E-value=6.3e-11 Score=110.90 Aligned_cols=64 Identities=11% Similarity=0.358 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006857 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEE 421 (628)
Q Consensus 358 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~ 421 (628)
..|..|+||++.|+|||||||++|.+..+++++++.+++|++++++++|.+.+.+.+...+..+
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~ 129 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999999999999999999999999999999999999999998866554443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.78 E-value=2.5e-08 Score=101.85 Aligned_cols=56 Identities=9% Similarity=0.158 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006857 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLE 413 (628)
Q Consensus 358 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~ 413 (628)
..|..|+||++.|+|||||||++|.+..+++++++.+++|++++|+++|.+.+.+.
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999998887775
No 67
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.74 E-value=1.5e-08 Score=104.61 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006857 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 415 (628)
Q Consensus 359 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~ 415 (628)
.|..|+||++.|+|||||||++|.+..+++++++.+++|++++|+++|.+.+.+...
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999888644
No 68
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.72 E-value=3.7e-08 Score=100.28 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Q 006857 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRML 438 (628)
Q Consensus 359 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~l 438 (628)
.|..|+||+++|+|||||||++|.+..+++|+++.+++|+.+++++++.+++.+.... +.....++..+.+++.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~------~~~i~~le~~~~~~~~ 188 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSL------RHGIGHIEAIFLKWHV 188 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTHHHHHHHTTTC-
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHhcccc
Confidence 6899999999999999999999999999999999999999999999999999987543 2223334444555555
Q ss_pred CH
Q 006857 439 PE 440 (628)
Q Consensus 439 p~ 440 (628)
++
T Consensus 189 ~~ 190 (309)
T 3um7_A 189 PP 190 (309)
T ss_dssp -C
T ss_pred ch
Confidence 44
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.61 E-value=2e-07 Score=95.95 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006857 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 415 (628)
Q Consensus 359 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~ 415 (628)
.|..|+||++.|+|||||||++|.+...++++++.+++|++++|+++|.+.+.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999999888753
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.47 E-value=5.4e-07 Score=92.81 Aligned_cols=59 Identities=15% Similarity=0.324 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhccCCCccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006857 359 KFFYCFWWGLRNLSSLGQNLKTST--FVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 417 (628)
Q Consensus 359 ~Y~~slyw~l~tlttvGygd~~~~--~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~ 417 (628)
.+..++||++.|+|||||||+.|+ +...++++.+.+++|+++.|+.+|.+.+-+.....
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 345799999999999999999997 67899999999999999999999988877765443
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.38 E-value=1.4e-06 Score=97.49 Aligned_cols=55 Identities=16% Similarity=0.379 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 006857 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGN-MQKYLE 413 (628)
Q Consensus 359 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~-~~~~l~ 413 (628)
.|+.|+||++.|+||+||||++|.+..+++++++++++|++++++.++. +...+.
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999998 555544
No 72
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.37 E-value=5.7e-07 Score=90.19 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006857 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLES 414 (628)
Q Consensus 359 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~ 414 (628)
.|..|+||+++|+|||||||++|.+...++|+++.+++|+.+++++++.+...+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999876643
No 73
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.29 E-value=2.8e-07 Score=93.80 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006857 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEV------FFAIFISISGLVLFALLIGNMQKYLESTTV 417 (628)
Q Consensus 360 Y~~slyw~l~tlttvGygd~~~~~~~E~------~~~i~~~i~G~~lfa~lig~~~~~l~~~~~ 417 (628)
|+.|+||++.|+|||||||++|.+..++ +++++++++|+.+++++++.+++.+.....
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~ 288 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999998886 599999999999999999999888775543
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.24 E-value=8.8e-07 Score=88.80 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhccCCCccccCchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006857 360 FFYCFWWGLRNLSSLGQNLKTSTFVG-------EVFFAIFISISGLVLFALLIGNMQKYLESTT 416 (628)
Q Consensus 360 Y~~slyw~l~tlttvGygd~~~~~~~-------E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~ 416 (628)
|+.|+||++.|+|||||||++|.+.. .++++++++++|+.+++++++.+.++++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999875 4999999999999999999999999887543
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.22 E-value=2.7e-06 Score=87.72 Aligned_cols=58 Identities=19% Similarity=0.405 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHhhccCCCccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006857 358 KKFFYCFWWGLRNLSSLGQNLKTST--FVGEVFFAIFISISGLVLFALLIGNMQKYLEST 415 (628)
Q Consensus 358 ~~Y~~slyw~l~tlttvGygd~~~~--~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~ 415 (628)
..+..++||++.|+||+||||..|+ +...++++.+.+++|+++.|+.+|.+.+-+...
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp 152 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARP 152 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3467899999999999999999864 788999999999999999999999888777643
No 76
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.10 E-value=3.3e-05 Score=75.77 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccccceecCCccccccCccchhhhhHHHHHHHHHHHHHHHhhheeeeeecCccccCCCeee
Q 006857 94 WWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELV 173 (628)
Q Consensus 94 ~W~~~~~~~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~~G~lV 173 (628)
.++.++.++.+.+++..-+.- .| .+.........++.++-++|.+|+++++... |
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~-~~----------~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~-----------~--- 67 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT-YE----------LDPLFLETIHLLDYGITIFFVIEILIRFIGE-----------K--- 67 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC-SS----------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHcc-CC----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------C---
Confidence 467777777777777655442 11 1223345677899999999999999998652 1
Q ss_pred cCHHHHHHHhhhh-hhHHHHHhhcch
Q 006857 174 DDPKAIAKRYLMS-YFIVDILAILPL 198 (628)
Q Consensus 174 ~d~~~Ia~~Yl~~-~F~iDlls~lP~ 198 (628)
-.++|.++ |-++|++.++|.
T Consensus 68 -----~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 68 -----QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp ------------CHHHHHHHHHHHHT
T ss_pred -----chhHHhcCCcHHHHHHHHHHH
Confidence 13679988 889998887765
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.06 E-value=2.9e-07 Score=95.98 Aligned_cols=57 Identities=12% Similarity=0.380 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006857 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTT 416 (628)
Q Consensus 360 Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~ 416 (628)
|..|+||++.|+||+||||++|.+..+++++++++++|+++++++++.+.+.+.+..
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999999999999998887643
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.46 E-value=0.00015 Score=65.82 Aligned_cols=77 Identities=8% Similarity=0.118 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhhhhccccceecCCccccccCccchhhhhHHHHHHHHHHHHHHHhhheeeeeecCccccCCCeeec
Q 006857 95 WNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVD 174 (628)
Q Consensus 95 W~~~~~~~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~~G~lV~ 174 (628)
|+.++.++.+.++++.-+..+.+. +......+..++.++-++|.+|+++++..+ |+
T Consensus 23 f~~~i~~lil~sv~~v~~et~~~i----------~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a---~~----------- 78 (147)
T 2kyh_A 23 VELGVSYAALLSVIVVVVEYTMQL----------SGEYLVRLYLVDLILVIILWADYAYRAYKS---GD----------- 78 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhh----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHC---Cc-----------
Confidence 777777777777766655532211 111234677899999999999999999765 21
Q ss_pred CHHHHHHHhhhhhhHHHHHhhcchhHH
Q 006857 175 DPKAIAKRYLMSYFIVDILAILPLPQL 201 (628)
Q Consensus 175 d~~~Ia~~Yl~~~F~iDlls~lP~~~i 201 (628)
.++|+++ -++|++|++|+...
T Consensus 79 -----k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 79 -----PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp -----HHHHHHH-STTTHHHHCCHHHH
T ss_pred -----HHHHHHH-HHHHHHHHHHHHHH
Confidence 4678987 68999999999644
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.27 E-value=0.00031 Score=62.56 Aligned_cols=79 Identities=6% Similarity=0.072 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccceecCCccccccCccchhhhhHHHHHHHHHHHHHHHhhheeeeeecCccccCCCee
Q 006857 93 QWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGEL 172 (628)
Q Consensus 93 ~~W~~~~~~~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~~G~l 172 (628)
+.++.+++++.+.+++..-+.-. |.. +......+..++.++-++|.+|+++++.++ ++
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~-~~~---------~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~--------- 63 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYT-MQL---------SGEYLVRLYLVDLILVIILWADYAYRAYKS---GD--------- 63 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SCC---------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-hhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC---------
Confidence 34677777777776666555421 111 122345678899999999999999999764 21
Q ss_pred ecCHHHHHHHhhhhhhHHHHHhhcchhHH
Q 006857 173 VDDPKAIAKRYLMSYFIVDILAILPLPQL 201 (628)
Q Consensus 173 V~d~~~Ia~~Yl~~~F~iDlls~lP~~~i 201 (628)
.++|++ |-++|+++++|+..-
T Consensus 64 -------~~~y~~-~niiDllailp~~~~ 84 (132)
T 1ors_C 64 -------PAGYVK-KTLYEIPALVPAGLL 84 (132)
T ss_dssp -------TTTTTT-TCGGGTGGGSCHHHH
T ss_pred -------HHHHHH-HHHHHHHHHHHHHHH
Confidence 257999 999999999999643
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=69.32 E-value=19 Score=29.89 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=46.7
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEE
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 586 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A 586 (628)
+....++||+.+-..-.+.++++++++|++++.. +++ ...+++||.+=-. +. ....+++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ip-------~~-------~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA-----QRRLHQGDLLYLG-------AG-------AAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE-----EEEECTTEEEEEC-------TT-------CCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE-----EEEECCCCEEEEC-------CC-------CcEEEEe
Confidence 3445688898876655666799999999998865 333 3679999987422 11 2457788
Q ss_pred cceEEEEE
Q 006857 587 LTEVEAFS 594 (628)
Q Consensus 587 ~t~~ell~ 594 (628)
.+++.++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 88876554
No 81
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=68.56 E-value=20 Score=34.05 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=52.3
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEE
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 586 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A 586 (628)
+....+.||+.+-..-.+.+.+++|++|++++... |+ ...+++||++=-. +. .+..++|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~~p-------~~-------~~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLEIT-------AN-------HNYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEEEC-------SS-------CCEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEEEC-------CC-------CCEEEEE
Confidence 45566899999987777889999999999998763 33 3679999886422 11 3568899
Q ss_pred cceEEEEEe
Q 006857 587 LTEVEAFSL 595 (628)
Q Consensus 587 ~t~~ell~L 595 (628)
.+++.++.+
T Consensus 98 ~~~~~~l~i 106 (227)
T 3rns_A 98 RDNLKLIEI 106 (227)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999877
No 82
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=66.04 E-value=24 Score=28.95 Aligned_cols=66 Identities=9% Similarity=0.148 Sum_probs=43.0
Q ss_pred eEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcc
Q 006857 509 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT 588 (628)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t 588 (628)
...+++|+.+-....+.+++++|++|++.+.. +++ ...+++||.+=-. +. ....+.+.+
T Consensus 42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~i~-------~~-------~~H~~~~~~ 100 (114)
T 2ozj_A 42 LFSFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLMVP-------AH-------KIHAIAGKG 100 (114)
T ss_dssp EEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEEC-------TT-------CCBEEEEEE
T ss_pred EEEECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEEEC-------CC-------CcEEEEeCC
Confidence 33466777665445567799999999998765 333 3679999986422 11 233566667
Q ss_pred eEEEEEe
Q 006857 589 EVEAFSL 595 (628)
Q Consensus 589 ~~ell~L 595 (628)
++.++.+
T Consensus 101 ~~~~~~i 107 (114)
T 2ozj_A 101 RFKMLQI 107 (114)
T ss_dssp EEEEEEE
T ss_pred CcEEEEE
Confidence 7776654
No 83
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=64.60 E-value=18 Score=30.58 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=33.6
Q ss_pred eEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 509 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
...+.||..+-.. ...+++++|++|++++.. +|+ ...+++||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3457788766443 377899999999999876 444 36799999875
No 84
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=63.27 E-value=6.6 Score=44.94 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006857 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLES 414 (628)
Q Consensus 359 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~ 414 (628)
....++|+++.+++..| ++..|.....+++.++++++++++.+...+++++++..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35679999999998888 67889999999999999999999999999999999974
No 85
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=59.33 E-value=56 Score=26.57 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=45.0
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEE
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 586 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A 586 (628)
+....++||..+-.--.+..++++|++|.+.+.. +++ ...+.+||.+=-. +. ....+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFFVP-------PH-------VDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEEEC-------TT-------CCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEEEC-------cC-------CceeeEe
Confidence 3445578887754333346789999999998865 343 3679999986322 11 2346777
Q ss_pred cceEEEEEe
Q 006857 587 LTEVEAFSL 595 (628)
Q Consensus 587 ~t~~ell~L 595 (628)
.++++++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 778877766
No 86
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=59.03 E-value=45 Score=27.12 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=44.9
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEE
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 586 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A 586 (628)
+....++||..+-.--.+..++++|++|.+.+.. +++ ...+.+||.+=-. +. ....+.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIVMP-------AG-------IPHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEEC-------TT-------SCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEEEC-------CC-------CCEEEEE
Confidence 3445678888764434446799999999998865 333 3679999987422 11 2346777
Q ss_pred cceEEEEEe
Q 006857 587 LTEVEAFSL 595 (628)
Q Consensus 587 ~t~~ell~L 595 (628)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 777776654
No 87
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=55.19 E-value=42 Score=27.37 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=33.9
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
.-...++||+.-.. .+.+++++|++|++.+... +++ ...+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCC-----EEEECCCCEEE
Confidence 33556778876544 4467999999999998763 233 46899999874
No 88
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=52.09 E-value=20 Score=32.72 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=36.0
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEe
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fG 561 (628)
+....++||......-..++++++|++|++++... .++.. ...+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~----~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD----TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE----EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE----EEEECCCCEEE
Confidence 44556888877654434467999999999998553 33332 46899999875
No 89
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=51.77 E-value=23 Score=32.20 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=27.6
Q ss_pred CcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 524 PVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 524 ~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
+.++++++++|.+.+-..++|+.+ -..+++||+|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE
Confidence 567999999999999776655332 37899999984
No 90
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=48.09 E-value=31 Score=27.86 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=33.9
Q ss_pred cceEEeCCCCeEecc--CCC-cCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 507 LKPVLYTEKSFIVRE--GDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 507 l~~~~~~~ge~I~~e--Gd~-~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
+....++||..+-.. -.+ ..++++|++|++.+.. +++ ...+++||.+=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 344567888876543 334 6799999999998865 333 36789998864
No 91
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=47.71 E-value=30 Score=28.85 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=33.7
Q ss_pred cceEEeCCCCeEeccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 507 LKPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
+....++||..+-..-.+ ..++++|++|++.+... +++ ...+++||.+=
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCe-----EEEeCCCCEEE
Confidence 445668888877544444 36899999999987542 333 36789999763
No 92
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=46.00 E-value=35 Score=26.87 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=32.5
Q ss_pred ceEEeCCCCeEeccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 508 KPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~-~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
....++||..+-..-.+ .+++++|++|.+.+.. +++ ...+++||.+=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~--~~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV--GEE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 44557888876433333 3579999999998865 233 36889999873
No 93
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=45.26 E-value=32 Score=28.64 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=34.9
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
+....++||..+-.--.+..++++|++|.+.+.. +++ ...+++||.+=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 4455688888775444556799999999998865 333 36889999863
No 94
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=44.98 E-value=19 Score=30.72 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=31.8
Q ss_pred EeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEeh
Q 006857 511 LYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (628)
Q Consensus 511 ~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (628)
...||..-.+..+ .+++++|++|++.+... +|+ ...+++||.+--
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~-----~~~l~~GD~~~i 99 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGT-----VHAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCC-----EEEEETTCEEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCe-----EEEECCCCEEEE
Confidence 4566766654432 38999999999988653 343 367999999853
No 95
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=43.60 E-value=42 Score=29.35 Aligned_cols=64 Identities=6% Similarity=0.073 Sum_probs=40.0
Q ss_pred ccCCCcCeEEEEEeeEEEEEEecC--CeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeH
Q 006857 520 REGDPVEEMLFVMRGNLVSTTTYG--GRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMA 597 (628)
Q Consensus 520 ~eGd~~~~lyfI~~G~V~v~~~~~--g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~ 597 (628)
+.-+..|++|+|++|.+.+...++ +.... ....+++|+++--- +. --.+-.|.++|.++.+..
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d-~~V~l~~Ge~yvVP--------kG------veH~p~a~~e~~vLLiEp 109 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNI-ELTLMEKGKVYNVP--------AE------CWFYSITQKDTKMMYVQD 109 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEE-EEEECCTTCCEEEC--------TT------CEEEEEECTTCEEEEEEE
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCcc-ceEEecCCCEEEeC--------CC------ccCcccCCCceEEEEEEe
Confidence 444567899999999999865432 11011 14688999987422 21 133556677777777654
Q ss_pred H
Q 006857 598 D 598 (628)
Q Consensus 598 ~ 598 (628)
.
T Consensus 110 ~ 110 (140)
T 3d0j_A 110 S 110 (140)
T ss_dssp S
T ss_pred C
Confidence 3
No 96
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=43.24 E-value=27 Score=29.59 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=32.8
Q ss_pred EeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehh
Q 006857 511 LYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEA 563 (628)
Q Consensus 511 ~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 563 (628)
..+||..-... +..++++.|++|++.+...+ |. ...+++||.+---
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~dd-G~-----~~~l~aGD~~~~P 93 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQAD-AD-----PVKIGPGSIVSIA 93 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEETT-CC-----CEEECTTEEEEEC
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeCC-Ce-----EEEECCCCEEEEC
Confidence 46677665554 33459999999999887644 44 3689999998643
No 97
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=42.21 E-value=73 Score=29.98 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=47.9
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEE
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 586 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A 586 (628)
+....++||+.+-..-.+.++++++++|++++.. +++ ...+++||.+=-.+ . ....+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~-----~~~l~~Gd~i~ip~-------~-------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK-----PFIVKKGESAVLPA-------N-------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEEECT-------T-------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE-----EEEECCCCEEEECC-------C-------CcEEEEe
Confidence 4556789999886555667789999999998865 333 36899999864221 1 2446788
Q ss_pred -cceEEEEEe
Q 006857 587 -LTEVEAFSL 595 (628)
Q Consensus 587 -~t~~ell~L 595 (628)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 888876653
No 98
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=41.17 E-value=33 Score=31.23 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=26.9
Q ss_pred CCcCeEEEEEeeEEEEEEecCC---eeeEEEEEEecCCCeEe
Q 006857 523 DPVEEMLFVMRGNLVSTTTYGG---RTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 523 d~~~~lyfI~~G~V~v~~~~~g---~~~~~~~~~l~~Gd~fG 561 (628)
++.++++++++|.+.+-..++| ++ +.-..+++||+|=
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d~g~~~~~--~~dv~i~eGdmfl 91 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVDETDAEPK--FIDIIINEGDSYL 91 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEECSSSSCE--EEEEEECTTEEEE
T ss_pred CCCceEEEEEeCEEEEEEEcCCCcccc--eeeEEECCCCEEE
Confidence 3456999999999999766644 11 1147899999984
No 99
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=39.40 E-value=43 Score=30.54 Aligned_cols=49 Identities=18% Similarity=0.101 Sum_probs=32.7
Q ss_pred EEeCCCCeEe---ccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 510 VLYTEKSFIV---REGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 510 ~~~~~ge~I~---~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
..++||...- .-..+.+++++|++|++++...+++... ...+++||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 3567776553 2233447999999999998764422111 46899999874
No 100
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=38.46 E-value=22 Score=28.39 Aligned_cols=49 Identities=12% Similarity=0.052 Sum_probs=32.0
Q ss_pred ceEEeCCCCeEeccCCCcC-eEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 508 KPVLYTEKSFIVREGDPVE-EMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~-~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
....++||...-..-.+.+ ++++|++|.+++...++.+ ...+.+||.+=
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~-----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSV-----TSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEE-----EEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCE-----EEEEcCCCEEE
Confidence 3455778876522222333 5999999999886543212 46899999874
No 101
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=38.07 E-value=46 Score=29.78 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=33.7
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
+....++||..+-..-....++++|++|++.+.. +++ ...+++||++=
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3345577877664444457799999999998765 333 36789999874
No 102
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=35.80 E-value=41 Score=30.53 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=32.8
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeE
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 560 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~f 560 (628)
+....++||...-.--....+..+|++|++++...+ ++ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GC-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-Ce-----EEEECCCCEE
Confidence 344567787754333334457889999999986542 33 3679999998
No 103
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=35.14 E-value=53 Score=30.99 Aligned_cols=44 Identities=14% Similarity=0.019 Sum_probs=29.7
Q ss_pred eCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 512 YTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 512 ~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
+.||...=.--.+.+++|+|++|.++....+++ ...+++||.+=
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~------~~~l~pGd~v~ 182 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHLRNAP------DLMLEPGQTRF 182 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEETTSC------CEEECTTCEEE
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEECCCC------EEecCCCCEEE
Confidence 444444322234577999999999988664333 46889999874
No 104
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=34.61 E-value=75 Score=31.19 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=40.7
Q ss_pred eEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEee
Q 006857 517 FIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLM 596 (628)
Q Consensus 517 ~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~ 596 (628)
..++ -+..+++|++++|.+.+-..++|+-+ -..+++|++|=- |+. -..+=++.++|..+.+.
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d~g~~~---~V~i~eGemfll--------P~g------v~HsP~r~~et~gLviE 105 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLEQGKHR---DVVIRQGEIFLL--------PAR------VPHSPQRFANTVGLVVE 105 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEETTEEE---EEEECTTEEEEE--------CTT------CCEEEEECTTCEEEEEE
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEeCCcee---eEEECCCeEEEe--------CCC------CCcCCcccCCeEEEEEe
Confidence 4444 45578999999999999666655322 368999998832 221 12344556677777766
Q ss_pred H
Q 006857 597 A 597 (628)
Q Consensus 597 ~ 597 (628)
+
T Consensus 106 ~ 106 (286)
T 2qnk_A 106 R 106 (286)
T ss_dssp E
T ss_pred e
Confidence 3
No 105
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=34.16 E-value=45 Score=29.44 Aligned_cols=50 Identities=8% Similarity=-0.055 Sum_probs=32.9
Q ss_pred ceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCe------eeEEEEEEecCCCeEe
Q 006857 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGR------TGFFNAVYLKAGDFCG 561 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~------~~~~~~~~l~~Gd~fG 561 (628)
....++||..+-.--....++++|++|.+.+...++++ + ...+++||++=
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~----~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ----EIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE----EEEECTTEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE----EEEeCCCCEEE
Confidence 34457787755222224568999999999987755221 2 46899999864
No 106
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=33.55 E-value=55 Score=29.00 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=24.7
Q ss_pred CcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 524 PVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 524 ~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
..+++++|++|++++.. +|+ ...+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 45789999999999875 454 46899999874
No 107
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=33.04 E-value=1.7e+02 Score=23.03 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=41.1
Q ss_pred ceEEeCCCCeEeccCCCc-CeE-EEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEE
Q 006857 508 KPVLYTEKSFIVREGDPV-EEM-LFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ 585 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~-~~l-yfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~ 585 (628)
....+++|..+-..-.+. .++ +++++|.+.+...+ ++ ...+.+||.+=--. . ....+.
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip~-------~-------~~H~~~ 95 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DA-----VIPAPRGAVLVAPI-------S-------TPHGVR 95 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GC-----EEEECTTEEEEEET-------T-------SCEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CE-----EEEECCCCEEEeCC-------C-------CcEEEE
Confidence 334577887764333332 466 89999999876532 23 36799999764221 1 234567
Q ss_pred EcceEEEEEe
Q 006857 586 ALTEVEAFSL 595 (628)
Q Consensus 586 A~t~~ell~L 595 (628)
+.+++.++.+
T Consensus 96 ~~~~~~~l~~ 105 (110)
T 2q30_A 96 AVTDMKVLVT 105 (110)
T ss_dssp ESSSEEEEEE
T ss_pred EcCCcEEEEE
Confidence 7777665543
No 108
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=32.83 E-value=43 Score=27.03 Aligned_cols=68 Identities=9% Similarity=0.147 Sum_probs=40.8
Q ss_pred eCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEE
Q 006857 512 YTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVE 591 (628)
Q Consensus 512 ~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~e 591 (628)
..+|+...+.-+..+++++|++|.+.+...+ ++ ...+++||.+=-. +. ......+.+++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~~~~~~ 94 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAVVP-------KS-------VSHRPRSENGCS 94 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEEEC-------TT-------CCEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEEEC-------CC-------CcEeeEeCCCeE
Confidence 3455543333333389999999999886643 13 3689999987322 11 123455556788
Q ss_pred EEEeeHHH
Q 006857 592 AFSLMADD 599 (628)
Q Consensus 592 ll~L~~~~ 599 (628)
++.+....
T Consensus 95 ~l~i~~~~ 102 (107)
T 2i45_A 95 LVLIELSD 102 (107)
T ss_dssp EEEEECC-
T ss_pred EEEEECCC
Confidence 87776544
No 109
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=32.70 E-value=64 Score=26.79 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=48.0
Q ss_pred ceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEc
Q 006857 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQAL 587 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~ 587 (628)
....++||...-.--....++++|++|.+.+.. +++ ...+++||.+=-. +. ....+.+.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~i~-------~~-------~~H~~~~~ 95 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLIIIP-------LD-------SEHHVINN 95 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEEC-------TT-------CCEEEEEC
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEEEC-------CC-------CcEEeEeC
Confidence 344566776543333456699999999998866 333 3678999987422 11 12244443
Q ss_pred --ceEE--EEEeeHHHHHHHHHHhH
Q 006857 588 --TEVE--AFSLMADDLKSVASQFR 608 (628)
Q Consensus 588 --t~~e--ll~L~~~~f~~ll~~~p 608 (628)
++++ ++.++.+-+..++.+.+
T Consensus 96 ~~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 96 NQEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEECHHHHHHHHHhcc
Confidence 4344 45667776666665543
No 110
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=32.54 E-value=91 Score=28.67 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=34.6
Q ss_pred cceEEeCCCCeEecc-CCCcCeEEEEEeeEEEEEEecC----CeeeEEEEEEecCCCeEe
Q 006857 507 LKPVLYTEKSFIVRE-GDPVEEMLFVMRGNLVSTTTYG----GRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 507 l~~~~~~~ge~I~~e-Gd~~~~lyfI~~G~V~v~~~~~----g~~~~~~~~~l~~Gd~fG 561 (628)
+....+.||...-.- -...+++++|++|++++...++ ++. . ...+++||.+=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~-~--~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL-Y--SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCE-E--EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeE-E--EEEECCCCEEE
Confidence 445667888765332 2335799999999999865433 331 1 36799999874
No 111
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=32.24 E-value=44 Score=29.63 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=31.5
Q ss_pred eEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 509 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
...++||...-..-....++++|++|++++.. +++ ...+++||++=
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i~ 93 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 33456776654333445689999999998865 333 46789999873
No 112
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=32.14 E-value=49 Score=27.13 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=29.7
Q ss_pred EEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 510 VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 510 ~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
..++||...-.--....++++|++|.+.+... ++. ...+++||.+=
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~----~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLE--DQE----PHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEET--TSC----CEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEEC--CEE----EEEeCCCCEEE
Confidence 44666665432223456899999999988652 332 22789999864
No 113
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=31.78 E-value=1.1e+02 Score=23.80 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=34.3
Q ss_pred cCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEee
Q 006857 525 VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLM 596 (628)
Q Consensus 525 ~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~ 596 (628)
..+++++++|.+.+... ++ ...+.+||.+=- .+. ....+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~i-------p~~-------~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYVI-------PKG-------VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECS--SC-----EEEEETTEEEEE-------CTT-------CCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEEE-------CCC-------CeEeeEcCCCCEEEEEE
Confidence 37999999999987543 22 367899987632 221 23456666788888775
No 114
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=31.28 E-value=54 Score=27.03 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=24.8
Q ss_pred CCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 523 DPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 523 d~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
...+++++|++|.+++...++.. ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~-----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA-----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS-----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEE-----EEEECCCCEEE
Confidence 45669999999999987643321 15799999875
No 115
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=31.19 E-value=47 Score=29.58 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=32.2
Q ss_pred ceEEeCCCCeEe--ccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 508 KPVLYTEKSFIV--REGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 508 ~~~~~~~ge~I~--~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
....++||.... +.-+..+++++|++|++++... ++ ...+++||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEE
Confidence 445677887542 2223346999999999988653 33 36799999864
No 116
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=30.94 E-value=43 Score=30.06 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=31.8
Q ss_pred eEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 509 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
...++||..+-..-....++++|++|++++.. +++ ...+++||++=
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34466776654444455689999999998755 333 46889999874
No 117
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=30.68 E-value=82 Score=27.28 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=32.3
Q ss_pred ceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
....++||..+-.--....++++|++|.+.+...+ +. ...+.+||.+=
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~--~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERG--KP----ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEETT--SC----CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEECC--EE----EEEECCCCEEE
Confidence 34557788766433334478999999999886532 21 15789999874
No 118
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=29.98 E-value=50 Score=29.07 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=32.0
Q ss_pred ceEEeCCCCe-E-eccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeE
Q 006857 508 KPVLYTEKSF-I-VREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 560 (628)
Q Consensus 508 ~~~~~~~ge~-I-~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~f 560 (628)
....++||.. . .+.-...+++++|++|++.+.. +++ ...+++||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END-----QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE-----EEEeCCCCEE
Confidence 4456788874 2 2222356799999999998865 333 3679999987
No 119
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=29.71 E-value=45 Score=34.60 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=34.6
Q ss_pred ceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
....++||+.+-.--....++|||++|+-..... +|+ ...+++||++=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v-~G~-----~~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGH-----KVELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE-CCE-----EEEEcCCCEEE
Confidence 6677899998866555666899999998754333 444 35788888764
No 120
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=29.28 E-value=63 Score=27.39 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=31.7
Q ss_pred eEEeCCCCeEeccCCC-cCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 509 PVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 509 ~~~~~~ge~I~~eGd~-~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
...++||..+-.--.. ..++++|++|++.+.. +++ ...+++||.+=
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGK-----DVPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCcEEE
Confidence 4567888765332223 3689999999998865 333 36789999873
No 121
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=28.96 E-value=61 Score=34.22 Aligned_cols=52 Identities=13% Similarity=0.235 Sum_probs=37.6
Q ss_pred ccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEe
Q 006857 506 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 506 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fG 561 (628)
.+....++||..+-..-..++++++|++|++.+... .++.+ ...+++||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~----~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD----TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE----EEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE----EEEecCCCEEE
Confidence 345567889987765555677999999999988543 33332 57899999874
No 122
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=28.75 E-value=75 Score=30.35 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=36.8
Q ss_pred ccceEEeCCCCeEec-cCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEeh
Q 006857 506 HLKPVLYTEKSFIVR-EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (628)
Q Consensus 506 ~l~~~~~~~ge~I~~-eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (628)
.+....++||..+=. +-...++.++|++|++.+.. +++ ...+++||++--
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~-----~~~l~~GD~~~~ 216 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN-----YYPVTAGDIIWM 216 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE-----EEEEETTCEEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE-----EEEcCCCCEEEE
Confidence 355667899987753 44556799999999998755 344 468999998753
No 123
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=28.73 E-value=58 Score=27.27 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=30.6
Q ss_pred eEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 509 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
...++||...-.--.+..++++|++|.+.+... ++ ...+.+||.+=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SC-----EEEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CE-----EEEECCCCEEE
Confidence 344566665533333467999999999987653 33 36789998874
No 124
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=28.25 E-value=68 Score=27.53 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=31.2
Q ss_pred eEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEeh
Q 006857 509 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (628)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe 562 (628)
...+.||+.-.+ ...+++++|++|++.+... |+ ...+++||.+--
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~--g~-----~~~l~~GD~i~~ 105 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE--GE-----TMIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET--TE-----EEEEETTCEEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC--CE-----EEEECCCcEEEE
Confidence 345677743222 2467999999999998653 44 358999998853
No 125
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=28.16 E-value=91 Score=28.13 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=31.5
Q ss_pred EEeCCCCeEec--cCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 510 VLYTEKSFIVR--EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 510 ~~~~~ge~I~~--eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
..++||...-. -.....++++|++|.+.+.. +++ ...+.+||.+=
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 45678776542 22334699999999998765 343 46899999874
No 126
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=27.22 E-value=17 Score=29.47 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=32.6
Q ss_pred cceEEeCCCCeEeccCCCc-CeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeE
Q 006857 507 LKPVLYTEKSFIVREGDPV-EEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 560 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~-~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~f 560 (628)
.+...++||+-+=.+-.+. ...|+|.+|.+.+...++... ...+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~----~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS----LAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE----CCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE----EEEecCCcEE
Confidence 3456688999886554444 468888999998865444322 3467888765
No 127
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=26.65 E-value=69 Score=33.47 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=37.5
Q ss_pred ccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 506 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 506 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
.+....+.||..+..--...+++++|++|++.+...+.+... ...+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 355677889987765555677999999999998543222221 46899999874
No 128
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=26.47 E-value=75 Score=33.41 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=38.2
Q ss_pred ccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 506 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 506 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
.+....+.||..+..--..++++++|++|++.+...+.+... ...+++||++-
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 114 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQK 114 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEE
Confidence 455677899988766655677999999999988553332221 57889999874
No 129
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=26.41 E-value=1.1e+02 Score=29.08 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=34.8
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeE
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 560 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~f 560 (628)
+....++||..+-.--.+..++++|++|.+++.. +++ ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 4455688998876555567799999999998866 343 3678999843
No 130
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=26.10 E-value=1e+02 Score=26.82 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=35.9
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehh
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEA 563 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 563 (628)
+....++||..+-.-..+..+.++|++|..+. . .+.... -..+++||++=.-
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~--~-~g~~~~--~~~~~~Gd~~~~p 97 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV--R-GGKAAG--GDTAIAPGYGYES 97 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE--T-TCGGGT--SEEEESSEEEEEC
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE--c-CCCEec--ceEeCCCEEEEEC
Confidence 55677999999877666678889999999973 2 222200 1467889887533
No 131
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=26.02 E-value=1.1e+02 Score=30.86 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=34.6
Q ss_pred ceEEeCCCCeEeccCCC-cCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEe
Q 006857 508 KPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~-~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (628)
....+.||...-..-.+ .+++++|++|++++...+ +|+.. ...+++||++=
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 34557788865332233 789999999999986644 34321 46899999864
No 132
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=25.81 E-value=1e+02 Score=31.37 Aligned_cols=52 Identities=13% Similarity=0.024 Sum_probs=35.8
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEe
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (628)
+....+.||...-.--.+..++++|++|++++...+ +|+.. ...+++||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEEE
Confidence 344567888866433334789999999999987654 35431 24899999863
No 133
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=25.08 E-value=77 Score=26.25 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=29.9
Q ss_pred ceEEeCCCCeEe--ccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 508 KPVLYTEKSFIV--REGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 508 ~~~~~~~ge~I~--~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
....++||..+- +.-+..+.+|+|++|.+.+.. +++ ...+++||++=
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 77 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI--DGE-----KIELQAGDWLR 77 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 344577777552 222333457779999998765 333 36789999864
No 134
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=24.90 E-value=68 Score=27.18 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=28.2
Q ss_pred EeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 511 LYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 511 ~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
.++||..+-.--....++++|++|++.+....+++ ...+++||.+=
T Consensus 45 ~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~-----~~~l~~Gd~~~ 90 (145)
T 3ht1_A 45 EVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGR-----TEEVGPGEAIF 90 (145)
T ss_dssp EEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTE-----EEEECTTCEEE
T ss_pred EECCCCcCCCccCCCceEEEEEEeEEEEEEeECCE-----EEEECCCCEEE
Confidence 34555543222223446677999999886323444 46899999763
No 135
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=24.14 E-value=1.5e+02 Score=31.64 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=40.0
Q ss_pred HHHHHhccceEEeCCCCeEecc-CCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEe
Q 006857 500 LDAMCDHLKPVLYTEKSFIVRE-GDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 500 l~~l~~~l~~~~~~~ge~I~~e-Gd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (628)
+..+-..+....+.||..+-.- -..++++++|++|.+++...+ .|...+ -..+++||++=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~--~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVF--DGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEE--eEEEcCCCEEE
Confidence 4455455667778888865432 233689999999999985533 333321 35799999874
No 136
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=23.94 E-value=1e+02 Score=29.92 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=34.5
Q ss_pred cceEEeCCCCeEec-cCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 507 LKPVLYTEKSFIVR-EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 507 l~~~~~~~ge~I~~-eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
+....++||..+-. .-...+++++|++|++.+.. +++ ...+++||++=
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i--~~~-----~~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL--DNE-----WYPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 34456888887643 33456799999999998865 333 46899999874
No 137
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=23.85 E-value=1.3e+02 Score=25.93 Aligned_cols=50 Identities=12% Similarity=-0.084 Sum_probs=31.4
Q ss_pred eEEeCCCCeEeccCC-CcCeEEEEEeeEEEEEEecCCee-eEEEEEEecCCCeE
Q 006857 509 PVLYTEKSFIVREGD-PVEEMLFVMRGNLVSTTTYGGRT-GFFNAVYLKAGDFC 560 (628)
Q Consensus 509 ~~~~~~ge~I~~eGd-~~~~lyfI~~G~V~v~~~~~g~~-~~~~~~~l~~Gd~f 560 (628)
...++||..+-..-. ..+++++|++|.+.+...+.... .. ...+.+||.+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~--~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHF--QEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCE--EEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCcccccee--eEEECCCCEE
Confidence 445778776533222 34599999999999876443210 00 1678999875
No 138
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=23.64 E-value=1e+02 Score=30.04 Aligned_cols=50 Identities=28% Similarity=0.311 Sum_probs=37.3
Q ss_pred hccceEEeCCCCeEec-cCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 505 DHLKPVLYTEKSFIVR-EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 505 ~~l~~~~~~~ge~I~~-eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
-.+....++||..|-. +-...++.++|++|+..+.. +|+ ...+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~-----~~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQD-----WVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3456677999999964 55555689999999997754 344 47899999874
No 139
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=23.50 E-value=1.5e+02 Score=27.14 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=46.2
Q ss_pred ccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEE
Q 006857 506 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ 585 (628)
Q Consensus 506 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~ 585 (628)
.+....+.||..+-.-.....++.+|++|..+ ++ -..+.+||++=.- +. ...+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~-----de------~~~~~~Gd~~~~p-------~g-------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR-----DE------TDRFGAGDIEIAD-------QE-------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE-----CS------SSEEETTCEEEEC-------SS-------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE-----CC------cEEECCCeEEEeC-------cC-------CccCCE
Confidence 45677799999998888888999999999965 22 2468899986422 11 233455
Q ss_pred E--cceEEEEEe
Q 006857 586 A--LTEVEAFSL 595 (628)
Q Consensus 586 A--~t~~ell~L 595 (628)
+ .+.|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 5 677887764
No 140
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=23.40 E-value=1.6e+02 Score=28.65 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=43.8
Q ss_pred ceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEc
Q 006857 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQAL 587 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~ 587 (628)
....++||..--......+++.+|++|++.+...+ |+ ...+++||.+=..+ . ...+++..
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~-----~~~L~~Gds~y~p~-------~-------~~H~~~N~ 132 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SS-----SKKLTVDSYAYLPP-------N-------FHHSLDCV 132 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CC-----CEEECTTEEEEECT-------T-------CCCEEEES
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-Cc-----EEEEcCCCEEEECC-------C-------CCEEEEeC
Confidence 34557888764333345679999999999886532 33 36799999874332 1 13355556
Q ss_pred ceEEEEEee
Q 006857 588 TEVEAFSLM 596 (628)
Q Consensus 588 t~~ell~L~ 596 (628)
++++++.+.
T Consensus 133 ~~Ar~l~V~ 141 (266)
T 4e2q_A 133 ESATLVVFE 141 (266)
T ss_dssp SCEEEEEEE
T ss_pred CCEEEEEEE
Confidence 778877764
No 141
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=23.26 E-value=64 Score=29.07 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=30.0
Q ss_pred EEeCC-CCe-EeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 510 VLYTE-KSF-IVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 510 ~~~~~-ge~-I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
..++| |.. =-..-...+++++|++|.+++.. +++ ...+++||.+=
T Consensus 93 v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl--~g~-----~~~L~~Gds~~ 139 (166)
T 2vpv_A 93 LKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV--CKN-----KFLSVKGSTFQ 139 (166)
T ss_dssp EEECSSGGGCEEEECCSEEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 34667 431 11123345789999999999866 333 36899999875
No 142
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=23.23 E-value=1.4e+02 Score=32.03 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=39.2
Q ss_pred HHHHHhccceEEeCCCCeEecc-CCCcCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeE
Q 006857 500 LDAMCDHLKPVLYTEKSFIVRE-GDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFC 560 (628)
Q Consensus 500 l~~l~~~l~~~~~~~ge~I~~e-Gd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~f 560 (628)
+..+--.+....+.||..+-.- ...++++++|++|.+++... .+|...+ ...+++||++
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~--~~~l~~GDv~ 427 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVY--DEELQEGHVL 427 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEE--eEEEcCCcEE
Confidence 3444455667778899866432 23367999999999998553 3343322 3569999987
No 143
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=22.35 E-value=89 Score=32.41 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=37.9
Q ss_pred ccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEE-ecCCeeeEEEEEEecCCCe
Q 006857 506 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDF 559 (628)
Q Consensus 506 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~-~~~g~~~~~~~~~l~~Gd~ 559 (628)
.+....+.||..+...-..++++++|++|+..+.. ..++++ ...+++||+
T Consensus 53 s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~----~~~l~~GDv 103 (397)
T 2phl_A 53 RLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRR----EYFFLTSDN 103 (397)
T ss_dssp EEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEE----EEEEEESSC
T ss_pred EEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcE----EEEECCCCc
Confidence 35566789998876666678899999999998843 344553 478999999
No 144
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=21.95 E-value=1.4e+02 Score=31.68 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=36.6
Q ss_pred hccceEEeCCCCeEeccC-CCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEe
Q 006857 505 DHLKPVLYTEKSFIVREG-DPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 505 ~~l~~~~~~~ge~I~~eG-d~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (628)
-.+....+.||..+-.-= ..++++++|++|.+++...+ +|...+ ...+++||++=
T Consensus 338 is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~--~~~l~~GDv~v 394 (476)
T 1fxz_A 338 LSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVF--DGELQEGRVLI 394 (476)
T ss_dssp CCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEe--eeEEcCCCEEE
Confidence 345666788888764332 23679999999999985533 343322 35699999873
No 145
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=21.83 E-value=1.4e+02 Score=30.41 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=35.5
Q ss_pred cceEEeCCCCeEeccCCCc-CeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEe
Q 006857 507 LKPVLYTEKSFIVREGDPV-EEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~-~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fG 561 (628)
+....++||...-..-.+. +++++|++|++++... .+|+.. ...+++||.+=
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~---~~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR---TFNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE---EEEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE---EEEEcCCCEEE
Confidence 3445678888764333344 7999999999998653 344321 46899999874
No 146
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=21.60 E-value=1.4e+02 Score=28.43 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=32.2
Q ss_pred eEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEe
Q 006857 509 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 509 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fG 561 (628)
...++||...-..- .+++++|++|++++.. +++ ...+++||.+=
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 97 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE-----TRTLREYDYVY 97 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC-----EEEECTTEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE-----EEEECCCCEEE
Confidence 45578887665442 7789999999998865 333 36799999875
No 147
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=21.60 E-value=2.1e+02 Score=30.74 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=41.8
Q ss_pred HHHHHHhccceEEeCCCCeEecc-CCCcCeEEEEEeeEEEEEEec-CCeeeEEEEEEecCCCeEe
Q 006857 499 LLDAMCDHLKPVLYTEKSFIVRE-GDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 499 ~l~~l~~~l~~~~~~~ge~I~~e-Gd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~l~~Gd~fG 561 (628)
.+..+--.+....+.||.++-.- .-.++++.+|++|.+++...+ +|+..+ ...+.+||+|=
T Consensus 388 ~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~--~~~L~~GDV~v 450 (531)
T 3fz3_A 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAIL--DQEVQQGQLFI 450 (531)
T ss_dssp HHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEE--EEEecCCeEEE
Confidence 34445455677788998887432 334689999999999985433 344322 57899999873
No 148
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=21.53 E-value=98 Score=32.06 Aligned_cols=76 Identities=11% Similarity=0.001 Sum_probs=50.5
Q ss_pred cceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEE
Q 006857 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 586 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A 586 (628)
+....++||+..-.--...+++|+|++|+..+.. +|+ ...+++||+|=.-.- .......
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V--~ge-----~~~~~~GD~~~iP~g--------------~~H~~~N 354 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV--GGK-----RFDWSEHDIFCVPAW--------------TWHEHCN 354 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE--TTE-----EEEECTTCEEEECTT--------------CCEEEEE
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE--CCE-----EEEEeCCCEEEECCC--------------CeEEeEe
Confidence 3566789999876665667789999999985443 444 478999999854321 1223443
Q ss_pred ---cceEEEEEeeHHHHHHH
Q 006857 587 ---LTEVEAFSLMADDLKSV 603 (628)
Q Consensus 587 ---~t~~ell~L~~~~f~~l 603 (628)
-+++.++.+.-.-+.+-
T Consensus 355 ~g~~e~~~ll~i~D~Pl~~~ 374 (394)
T 3bu7_A 355 TQERDDACLFSFNDFPVMEK 374 (394)
T ss_dssp CCSSCCEEEEEEESHHHHHH
T ss_pred CCCCCCeEEEEeeCHHHHHH
Confidence 35677888776555543
No 149
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=21.36 E-value=1.5e+02 Score=29.72 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=35.4
Q ss_pred cceEEeCCCCeEeccCCC-cCeEEEEEeeEEEEEEe-cCCeeeEEEEEEecCCCeEe
Q 006857 507 LKPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 507 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~l~~Gd~fG 561 (628)
+....++||..+-..-.+ .+++++|++|++++... .+|+.. ...+++||++=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKAS---VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEE---EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEE---EEEECCCCEEE
Confidence 445668888876433333 48999999999998653 234311 36899999875
No 150
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=20.04 E-value=2.4e+02 Score=25.54 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=24.6
Q ss_pred CeEEEEEeeEEEEEEecC-CeeeEEEEEEecCCCeEe
Q 006857 526 EEMLFVMRGNLVSTTTYG-GRTGFFNAVYLKAGDFCG 561 (628)
Q Consensus 526 ~~lyfI~~G~V~v~~~~~-g~~~~~~~~~l~~Gd~fG 561 (628)
+++++|++|++.+...+. |+. . ...+++||.+=
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~~-~--~~~l~~GD~v~ 130 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGDA-K--WISMEPGTVVY 130 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCCE-E--EEEECTTCEEE
T ss_pred CEEEEEEcCEEEEEEcCcCCcE-E--EEEECCCcEEE
Confidence 699999999999876543 322 1 46899999873
No 151
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=20.00 E-value=3.5e+02 Score=27.26 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=49.4
Q ss_pred ceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEc
Q 006857 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQAL 587 (628)
Q Consensus 508 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~ 587 (628)
....+++|..--.--.+..++|+|++|+.++.. +++ ...+++||.|=--.- ....+.+.
T Consensus 271 ~~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~-----~~~~~~GD~~~vP~~--------------~~H~~~n~ 329 (354)
T 2d40_A 271 FLQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNE-----TFSFSAKDIFVVPTW--------------HGVSFQTT 329 (354)
T ss_dssp EEEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEECTT--------------CCEEEEEE
T ss_pred EEEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCE-----EEEEcCCCEEEECCC--------------CeEEEEeC
Confidence 355678877664444456689999999998866 444 478999999753321 13355566
Q ss_pred ceEEEEEeeHHHHHH
Q 006857 588 TEVEAFSLMADDLKS 602 (628)
Q Consensus 588 t~~ell~L~~~~f~~ 602 (628)
+++.++.+.-.-+.+
T Consensus 330 e~~~l~~~~d~p~~~ 344 (354)
T 2d40_A 330 QDSVLFSFSDRPVQE 344 (354)
T ss_dssp EEEEEEEEESHHHHH
T ss_pred CCEEEEEEcCHHHHH
Confidence 788888876554443
Done!