Your job contains 1 sequence.
>006859
MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET
INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ
TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL
HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN
RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL
EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR
HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS
TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF
AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP
RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI
CLKYSNQDEESIRHALQNLKESFIDGRI
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006859
(628 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130913 - symbol:MSH4 "AT4G17380" species:3702... 2513 3.7e-261 1
UNIPROTKB|E1BK76 - symbol:MSH4 "Uncharacterized protein" ... 956 3.7e-96 1
UNIPROTKB|O15457 - symbol:MSH4 "MutS protein homolog 4" s... 953 7.6e-96 1
UNIPROTKB|F1P4E2 - symbol:MSH4 "Uncharacterized protein" ... 950 1.6e-95 1
UNIPROTKB|E2RJA9 - symbol:MSH4 "Uncharacterized protein" ... 939 2.3e-94 1
UNIPROTKB|F1P6X2 - symbol:MSH4 "Uncharacterized protein" ... 939 2.3e-94 1
MGI|MGI:1860077 - symbol:Msh4 "mutS homolog 4 (E. coli)" ... 926 5.5e-93 1
RGD|1309190 - symbol:Msh4 "mutS homolog 4 (E. coli)" spec... 920 2.4e-92 1
UNIPROTKB|F1S9R2 - symbol:MSH4 "Uncharacterized protein" ... 681 8.1e-87 2
UNIPROTKB|I3L5Z8 - symbol:MSH4 "Uncharacterized protein" ... 681 8.1e-87 2
DICTYBASE|DDB_G0283957 - symbol:msh4 "mutS homolog" speci... 699 1.7e-68 1
SGD|S000001891 - symbol:MSH4 "Protein involved in meiotic... 593 2.4e-57 1
TIGR_CMR|CBU_1056 - symbol:CBU_1056 "DNA mismatch repair ... 542 6.5e-57 2
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 497 5.8e-56 2
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 503 2.2e-55 2
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 503 2.2e-55 2
WB|WBGene00001872 - symbol:him-14 species:6239 "Caenorhab... 562 4.9e-54 1
UNIPROTKB|Q23405 - symbol:him-14 "MutS protein homolog hi... 562 4.9e-54 1
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 482 1.6e-53 2
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 459 4.6e-53 2
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 453 1.1e-52 3
CGD|CAL0002525 - symbol:orf19.2579 species:5476 "Candida ... 546 1.9e-52 1
UNIPROTKB|P74926 - symbol:mutS "DNA mismatch repair prote... 484 3.3e-52 2
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 520 4.0e-52 2
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 499 7.1e-52 2
TIGR_CMR|BA_3905 - symbol:BA_3905 "DNA mismatch repair pr... 471 2.4e-51 2
TIGR_CMR|SPO_0011 - symbol:SPO_0011 "DNA mismatch repair ... 450 2.6e-51 2
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 487 2.9e-51 2
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 483 1.4e-50 2
UNIPROTKB|F1NV33 - symbol:MSH2 "Uncharacterized protein" ... 470 2.6e-50 2
UNIPROTKB|F1NFH4 - symbol:MSH2 "Uncharacterized protein" ... 470 2.8e-50 2
UNIPROTKB|O66652 - symbol:mutS "DNA mismatch repair prote... 467 9.0e-50 2
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 472 9.2e-50 2
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 458 1.3e-49 2
DICTYBASE|DDB_G0275809 - symbol:msh2 "mutS homolog" speci... 467 1.3e-49 2
RGD|620786 - symbol:Msh2 "mutS homolog 2 (E. coli)" speci... 464 1.6e-49 2
TIGR_CMR|ECH_0824 - symbol:ECH_0824 "DNA mismatch repair ... 456 2.1e-49 2
UNIPROTKB|Q3KKQ0 - symbol:mutS "DNA mismatch repair prote... 442 2.3e-49 2
POMBASE|SPAC13F5.01c - symbol:msh1 "mitochondrial MutS pr... 449 3.2e-49 2
UNIPROTKB|Q7NLT8 - symbol:mutS "DNA mismatch repair prote... 462 3.2e-49 2
ZFIN|ZDB-GENE-040426-2932 - symbol:msh2 "mutS homolog 2 (... 462 1.9e-48 2
TAIR|locus:2095097 - symbol:MSH2 "AT3G18524" species:3702... 435 2.8e-48 2
TIGR_CMR|APH_0857 - symbol:APH_0857 "DNA mismatch repair ... 440 4.3e-48 2
MGI|MGI:101816 - symbol:Msh2 "mutS homolog 2 (E. coli)" s... 448 4.4e-48 2
UNIPROTKB|E1C1F8 - symbol:MSH3 "Uncharacterized protein" ... 415 4.8e-48 3
UNIPROTKB|F1P9S9 - symbol:MSH3 "Uncharacterized protein" ... 422 5.0e-48 3
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 453 5.1e-48 2
UNIPROTKB|Q3MHE4 - symbol:MSH2 "DNA mismatch repair prote... 447 5.7e-48 2
UNIPROTKB|P43246 - symbol:MSH2 "DNA mismatch repair prote... 449 1.1e-47 2
UNIPROTKB|E9PHA6 - symbol:MSH2 "DNA mismatch repair prote... 446 2.2e-47 2
UNIPROTKB|F1PM37 - symbol:MSH2 "Uncharacterized protein" ... 444 2.5e-47 2
UNIPROTKB|F1MLH1 - symbol:MSH3 "Uncharacterized protein" ... 416 3.8e-47 3
SGD|S000005450 - symbol:MSH2 "Protein that forms heterodi... 428 9.8e-47 3
UNIPROTKB|Q752H0 - symbol:AFR603C "AFR603Cp" species:2848... 439 2.0e-46 2
UNIPROTKB|P20585 - symbol:MSH3 "DNA mismatch repair prote... 413 5.5e-46 3
MGI|MGI:109519 - symbol:Msh3 "mutS homolog 3 (E. coli)" s... 417 1.2e-45 3
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 449 1.3e-45 2
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 449 1.3e-45 2
UNIPROTKB|Q8F496 - symbol:mutS "DNA mismatch repair prote... 446 1.7e-45 2
UNIPROTKB|F1LQM8 - symbol:Msh3 "Protein Msh3" species:101... 412 2.7e-45 3
FB|FBgn0015546 - symbol:spel1 "spellchecker1" species:722... 441 2.6e-44 2
TAIR|locus:2131829 - symbol:MSH3 "AT4G25540" species:3702... 428 7.3e-44 2
UNIPROTKB|Q89VX1 - symbol:mutS "DNA mismatch repair prote... 432 8.3e-44 2
WB|WBGene00003418 - symbol:msh-2 species:6239 "Caenorhabd... 412 4.5e-43 2
UNIPROTKB|Q9TXR4 - symbol:msh-2 "Protein MSH-2" species:6... 412 4.5e-43 2
UNIPROTKB|O13396 - symbol:msh-2 "DNA mismatch repair prot... 427 2.0e-42 2
CGD|CAL0001526 - symbol:MSH2 species:5476 "Candida albica... 401 1.1e-41 2
POMBASE|SPCC285.16c - symbol:msh6 "MutS protein homolog" ... 416 1.9e-41 3
UNIPROTKB|F1SQH4 - symbol:LOC100739713 "Uncharacterized p... 439 2.2e-41 1
UNIPROTKB|F1SQH6 - symbol:LOC100739713 "Uncharacterized p... 439 2.2e-41 1
UNIPROTKB|Q7R8N0 - symbol:PY07191 "DNA mismatch repair pr... 438 2.8e-41 1
POMBASE|SPAC8F11.03 - symbol:msh3 "MutS protein homolog 3... 418 5.5e-41 2
DICTYBASE|DDB_G0275999 - symbol:msh1 "mutS homolog" speci... 414 1.3e-40 2
DICTYBASE|DDB_G0281683 - symbol:msh3 "mutS homolog" speci... 423 1.5e-40 2
TAIR|locus:1005716529 - symbol:MSH7 "AT3G24495" species:3... 384 1.9e-40 2
UNIPROTKB|Q5BDA1 - symbol:AN1479.2 "DNA-binding protein o... 437 3.6e-40 1
UNIPROTKB|B1N4L6 - symbol:EHI_123830 "DNA mismatch repair... 402 6.1e-40 2
UNIPROTKB|Q7RQK0 - symbol:PY01096 "MutS homolog 2-related... 406 2.8e-39 2
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 411 5.4e-39 3
UNIPROTKB|Q23K54 - symbol:TTHERM_00194810 "MutS domain II... 411 7.4e-39 2
UNIPROTKB|Q5VR41 - symbol:OJ1174_D05.15 "Os01g0180600 pro... 391 7.5e-39 2
POMBASE|SPBC19G7.01c - symbol:msh2 "MutS protein homolog ... 383 7.5e-39 2
ASPGD|ASPL0000073909 - symbol:AN10621 species:162425 "Eme... 401 1.8e-38 2
UNIPROTKB|Q7RKG5 - symbol:PY02936 "G/T mismatch binding p... 372 2.3e-38 2
UNIPROTKB|Q7S4J6 - symbol:NCU08135 "DNA mismatch repair p... 385 5.7e-38 2
UNIPROTKB|Q75D87 - symbol:AGOS_ABR137W "ABR137Wp" species... 400 1.1e-37 2
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 383 1.1e-37 2
UNIPROTKB|Q5B374 - symbol:AN5006.2 "Putative uncharacteri... 401 1.3e-37 2
SGD|S000000688 - symbol:MSH3 "Mismatch repair protein" sp... 366 4.9e-37 2
TAIR|locus:2132233 - symbol:MSH6 "AT4G02070" species:3702... 381 5.7e-37 2
UNIPROTKB|Q759V4 - symbol:MSH3 "DNA mismatch repair prote... 389 7.0e-37 2
UNIPROTKB|G4NEZ2 - symbol:MGG_00704 "DNA mismatch repair ... 375 1.1e-36 2
UNIPROTKB|Q74ZT2 - symbol:AGOS_AGR116W "AGR116Wp" species... 382 3.2e-36 2
ASPGD|ASPL0000041666 - symbol:mshA species:162425 "Emeric... 386 3.6e-36 2
UNIPROTKB|Q5BCM2 - symbol:AN1708.2 "Protein required for ... 386 3.6e-36 2
ZFIN|ZDB-GENE-020905-3 - symbol:msh6 "mutS homolog 6 (E. ... 347 9.9e-36 2
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 349 1.5e-35 2
CGD|CAL0006305 - symbol:MSH6 species:5476 "Candida albica... 367 2.6e-35 2
UNIPROTKB|Q7S0U7 - symbol:NCU07407 "Putative uncharacteri... 351 3.1e-35 2
CGD|CAL0005874 - symbol:orf19.496 species:5476 "Candida a... 379 4.2e-35 2
WARNING: Descriptions of 79 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2130913 [details] [associations]
symbol:MSH4 "AT4G17380" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0007129 "synapsis" evidence=RCA;IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007067 "mitosis"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0032204 "regulation of
telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 SMART:SM00533 SMART:SM00534 GO:GO:0009506
GO:GO:0005524 EMBL:CP002687 GO:GO:0003684 EMBL:Z97343 GO:GO:0030983
GO:GO:0008094 GO:GO:0051026 EMBL:AL161546 GO:GO:0045143
GO:GO:0043073 GO:GO:0000795 GO:GO:0007128 KO:K08740 OMA:GFFIQMT
SUPFAM:SSF48334 GO:GO:0032300 EMBL:AY646927 IPI:IPI00525244
IPI:IPI00538174 PIR:B71443 RefSeq:NP_193469.2 UniGene:At.24376
UniGene:At.71316 ProteinModelPortal:F4JP48 SMR:F4JP48 IntAct:F4JP48
EnsemblPlants:AT4G17380.1 GeneID:827450 KEGG:ath:AT4G17380
TAIR:At4g17380 GO:GO:0010777 Uniprot:F4JP48
Length = 792
Score = 2513 (889.7 bits), Expect = 3.7e-261, P = 3.7e-261
Identities = 480/628 (76%), Positives = 540/628 (85%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNIDATSV NLE+I+P H+AL GTSNKKRSLF M KTTKT GGTRLLRANLLQPLKDIET
Sbjct: 165 MNIDATSVENLELIDPFHNALLGTSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKDIET 224
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDCLDELMSNEQLFFGLSQ LRKFPKETDRVLCHFCFKPKKVT V+ +N +KSQ
Sbjct: 225 INTRLDCLDELMSNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTEAVIGFENTRKSQ 284
Query: 121 TLISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ISSII KVLKDA+ FLLAN+Y+SVCEN++YASIRK+IGEVID+DVL
Sbjct: 285 NMISSIILLKTALDALPILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVL 344
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXX 240
HARVPFVARTQQCFA+K GIDG LDIARR+FCDTSEA+HNLA+KYREE
Sbjct: 345 HARVPFVARTQQCFALKAGIDGFLDIARRTFCDTSEAIHNLASKYREEFNLPNLKLPFNN 404
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
RQGF+ IP K++QGKLP+ F QVVKHG NIHCS+LELASLNVRNKSAAGEC+IRTE CL
Sbjct: 405 RQGFFFRIPQKEVQGKLPNKFTQVVKHGKNIHCSSLELASLNVRNKSAAGECFIRTETCL 464
Query: 301 EALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
EAL+DAIRED+S DMIVNSFAHTISTKPVDRY+RP T++GPLAID GR
Sbjct: 465 EALMDAIREDISALTLLAEVLCLLDMIVNSFAHTISTKPVDRYSRPELTDSGPLAIDAGR 524
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPILESIHNDF+ N+IF+SEA NM++V GPNMSGKSTYLQQVCL+VILAQIGCYVPA F+
Sbjct: 525 HPILESIHNDFVSNSIFMSEATNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFA 584
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
TIRVVDRIFTRMGT+DNLESNSSTFMTEM+ETAF+MQNV+ RSLIVMDELGRATSSSDG
Sbjct: 585 TIRVVDRIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGL 644
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
A+AWSCCE+LLSLKAYT+FA+HM++L+ELATIYPNVK+LHFYV IR+NRLDFKFQL+DG
Sbjct: 645 AMAWSCCEYLLSLKAYTVFATHMDSLAELATIYPNVKVLHFYVDIRDNRLDFKFQLRDGT 704
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
HVPHYGLLLAEVAGLPSTVI+TAR IT RIT KE KR+E+NC ++ +I +Y AQRLI
Sbjct: 705 LHVPHYGLLLAEVAGLPSTVIDTARIITKRITDKENKRIELNCGKHHEIHRIYRVAQRLI 764
Query: 601 CLKYSNQDEESIRHALQNLKESFIDGRI 628
CLKYS Q E+SIR ALQNL ESF + R+
Sbjct: 765 CLKYSRQTEDSIRQALQNLNESFTEERL 792
>UNIPROTKB|E1BK76 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:DAAA02008282 EMBL:DAAA02008283 EMBL:DAAA02008284
IPI:IPI00710010 Ensembl:ENSBTAT00000024552 Uniprot:E1BK76
Length = 855
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 220/610 (36%), Positives = 362/610 (59%)
Query: 25 SNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQF 84
S +LF +L TKT GG+R LR+N+L+PL D+ETIN RLDC+ EL+ +E+LFFGL
Sbjct: 248 SRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDVETINMRLDCVQELLQDEELFFGLQSV 307
Query: 85 LRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIIXXXXXXXXXXXXXKVLK 144
+ +F +T+++L PK+ D N +S+ I+++I LK
Sbjct: 308 IARF-LDTEQLLSVLVQIPKQ------DTVNVAESK--ITNLICLKHTLELVDPLKITLK 358
Query: 145 DAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLL 204
+ + LL Y S+ E++++ I +I VI++D + + RTQ+C+A++ I+ L
Sbjct: 359 NCNTPLLRAYYGSL-EDKRFGIILDKIKTVINDDARYMKGCLNMRTQKCYAVRSNINEFL 417
Query: 205 DIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDI---QGKLPSTF 261
DIARR++ + + + + + E+ R GF++ + +LPS F
Sbjct: 418 DIARRTYTEIVDDIAGMITQLAEKYSLPLRTSFSSAR-GFFIQMTTDCTVLPNDQLPSEF 476
Query: 262 IQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXX 321
I++ K N+ ++ +L +N R + + E Y T + + L+ I E +
Sbjct: 477 IKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTV 536
Query: 322 XXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPNNIFISE 380
DM++ SFAH + + Y RP FT+ LAI G HPILE I + + NN +I+E
Sbjct: 537 SMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQGWHPILERISVEKPVANNTYITE 590
Query: 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLES 440
+N I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA +S+ R+ ++IFTR+ T D++E+
Sbjct: 591 GSNFFIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIET 650
Query: 441 NSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFA 500
NSSTFM EMKE A+++ N +++SLI++DELGR T++ +G I ++ CEHLLSLKA+T+FA
Sbjct: 651 NSSTFMKEMKEVAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEHLLSLKAFTLFA 710
Query: 501 SHMENLSELATIYPNVKILHFYVV-IRN---NR--LDFKFQLKDGPRHVPHYGLLLAEVA 554
+H L ++ +YPNV+ +HF V ++N N+ + + ++L G +YGL AEV+
Sbjct: 711 THFLELCQIDVLYPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEVS 770
Query: 555 GLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQ-DEESIR 613
LP +++ A+ IT++IT+ ++ + + + + ++ + +YH A RL+ ++Q D +S+R
Sbjct: 771 SLPPSIVLDAKDITTQITR-QILQNQRSAPEMERQRAVYHLATRLVQTARNSQLDPDSLR 829
Query: 614 HALQNLKESF 623
L NLK+ +
Sbjct: 830 TYLSNLKKKY 839
>UNIPROTKB|O15457 [details] [associations]
symbol:MSH4 "MutS protein homolog 4" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001541
"ovarian follicle development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007292 "female gamete
generation" evidence=IEA] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IRD] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CH471059 GO:GO:0007283
GO:GO:0006298 EMBL:AL357314 Reactome:REACT_111183 GO:GO:0001541
GO:GO:0030983 EMBL:AL445464 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 KO:K08740 OMA:GFFIQMT Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U89293 EMBL:AF104243
EMBL:AY268350 EMBL:BC033030 IPI:IPI00289914 RefSeq:NP_002431.2
UniGene:Hs.216639 ProteinModelPortal:O15457 SMR:O15457
IntAct:O15457 STRING:O15457 PhosphoSite:O15457 PRIDE:O15457
DNASU:4438 Ensembl:ENST00000263187 GeneID:4438 KEGG:hsa:4438
UCSC:uc001dhd.2 CTD:4438 GeneCards:GC01P076262 HGNC:HGNC:7327
HPA:HPA028117 MIM:602105 neXtProt:NX_O15457 PharmGKB:PA31135
HOGENOM:HOG000290656 HOVERGEN:HBG036910 InParanoid:O15457
OrthoDB:EOG4DR9BS PhylomeDB:O15457 GenomeRNAi:4438 NextBio:17297
ArrayExpress:O15457 Bgee:O15457 CleanEx:HS_MSH4
Genevestigator:O15457 GermOnline:ENSG00000057468 Uniprot:O15457
Length = 936
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 220/605 (36%), Positives = 364/605 (60%)
Query: 30 SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFP 89
+LF +L TKT GG+R LR+N+L+PL DIETIN RLDC+ EL+ +E+LFFGL + +F
Sbjct: 334 TLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRF- 392
Query: 90 KETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIIXXXXXXXXXXXXXKVLKDAQSF 149
+T+++L PK+ D NA +S+ I+++I +K+ +
Sbjct: 393 LDTEQLLSVLVQIPKQ------DTVNAAESK--ITNLIYLKHTLELVDPLKIAMKNCNTP 444
Query: 150 LLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARR 209
LL Y S+ E++++ I ++I VI++D + + RTQ+C+A++ I+ LDIARR
Sbjct: 445 LLRAYYGSL-EDKRFGIILEKIKTVINDDARYMKGCLNMRTQKCYAVRSNINEFLDIARR 503
Query: 210 SFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDI---QGKLPSTFIQVVK 266
++ + + + + ++ E+ R GF++ + I +LPS FI++ K
Sbjct: 504 TYTEIVDDIAGMISQLGEKYSLPLRTSFSSAR-GFFIQMTTDCIALPSDQLPSEFIKISK 562
Query: 267 HGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDM 326
N+ ++ +L +N R + + E Y T + + L+ I E + DM
Sbjct: 563 VKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDM 622
Query: 327 IVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPNNIFISEAANMV 385
++ SFAH + + Y RP FT+ LAI G HPILE I + I NN +++E +N +
Sbjct: 623 LL-SFAHACT---LSDYVRPEFTDT--LAIKQGWHPILEKISAEKPIANNTYVTEGSNFL 676
Query: 386 IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTF 445
I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA +S+ R+ +IFTR+ T D++E+NSSTF
Sbjct: 677 IITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAKQIFTRISTDDDIETNSSTF 736
Query: 446 MTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505
M EMKE A+++ N +++SLI++DELGR T++ +G I ++ CE+LLSLKA+T+FA+H
Sbjct: 737 MKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLSLKAFTLFATHFLE 796
Query: 506 LSELATIYPNVKILHFYVV-IRN---NR--LDFKFQLKDGPRHVPHYGLLLAEVAGLPST 559
L + +YPNV+ +HF V ++N N+ + + ++L G +YGL AEV+ LP +
Sbjct: 797 LCHIDALYPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEVSSLPPS 856
Query: 560 VIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQ-DEESIRHALQN 618
++ A+ IT++IT+ ++ + + + + ++ + +YH A RL+ ++Q D +S+R L N
Sbjct: 857 IVLDAKEITTQITR-QILQNQRSTPEMERQRAVYHLATRLVQTARNSQLDPDSLRIYLSN 915
Query: 619 LKESF 623
LK+ +
Sbjct: 916 LKKKY 920
Score = 363 (132.8 bits), Expect = 3.3e-30, P = 3.3e-30
Identities = 100/334 (29%), Positives = 180/334 (53%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + ++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 312 IDSSSAQNLELL--INNQDYRNNH---TLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 366
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 367 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 417
Query: 123 ISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 418 ITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 476
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ R
Sbjct: 477 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLPLRTSFSSAR- 535
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + I +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 536 GFFIQMTTDCIALPSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 595
Query: 300 LEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAH 333
+ L+ I E + DM++ SFAH
Sbjct: 596 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAH 628
>UNIPROTKB|F1P4E2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0001541 "ovarian follicle development" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007292 "female gamete generation" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AADN02012381 IPI:IPI00596754 Ensembl:ENSGALT00000018582
Uniprot:F1P4E2
Length = 846
Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
Identities = 218/610 (35%), Positives = 353/610 (57%)
Query: 25 SNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQF 84
S +LF +L T+T GG+R LR+N+L+PL D ETI TRLDC+ E + +E+LFFGL
Sbjct: 242 SRNGHTLFGVLNYTRTPGGSRRLRSNILEPLVDAETIKTRLDCVQEFLQDEELFFGLQAV 301
Query: 85 LRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIIXXXXXXXXXXXXXKVLK 144
+ KF +T+++L PK+ D K +++ IS+II L+
Sbjct: 302 ISKF-LDTEQLLSILVQIPKQ--------DTVKTAESKISNIIYLKHTLELVEPLKAALR 352
Query: 145 DAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLL 204
+ LL Y ++ E+ ++ I ++I VI++D +A+ RTQ+C+A+K I+ L
Sbjct: 353 RCNTSLLRAYYNAL-EDRRFGIILEKITAVINDDTRYAKGCLSMRTQKCYAVKPNINEFL 411
Query: 205 DIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQ----GKLPST 260
DIARR++ + + + + + E+ R GF++ + + D GKLPS
Sbjct: 412 DIARRTYTEIVDDIAGMITQLAEKYNLPLKTSFSSVR-GFFIQM-NADCSALPNGKLPSE 469
Query: 261 FIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXX 320
F +V K N ++ +L +N R + + E Y T + + L++ I E +
Sbjct: 470 FTKVTKTRNTYSFTSADLIKMNERCQESLREIYHMTYLIVCKLLNEIYEHIHCLYKLSDI 529
Query: 321 XXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPNNIFIS 379
DM++ SFAH + + Y RP FT+ LAI G HPILE I + + NN +++
Sbjct: 530 VSMLDMLL-SFAHACT---ISDYVRPEFTDT--LAIKQGWHPILEKIAMEKPVSNNAYLT 583
Query: 380 EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLE 439
E +N +I+TGPNMSGKSTY++Q+ L I+AQIG YVPA + + R+ ++IFTR+G D++E
Sbjct: 584 EGSNFLIITGPNMSGKSTYIKQIALCQIMAQIGSYVPAEYCSFRIAEQIFTRIGMDDDIE 643
Query: 440 SNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIF 499
+N+STFM EMKE +++QN +++SLI++DELGR TS+ +G I ++ CE+LL+LKA+T+F
Sbjct: 644 TNASTFMKEMKEITYIIQNANDKSLIIIDELGRGTSAEEGIGICYAACEYLLNLKAFTLF 703
Query: 500 ASHMENLSELATIYPNVKILHFYVV-IRNN----RLDFKFQLKDGPRHVPHYGLLLAEVA 554
A+H L + +YPNV+ HF V +R++ ++ + + L G +YGL AEV+
Sbjct: 704 ATHFLELCHMDALYPNVENYHFEVQHVRSSAGKEKITYTYTLSKGYTEEKNYGLKAAEVS 763
Query: 555 GLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI-CLKYSNQDEESIR 613
LP ++I A++IT+ I K+ + R K + +YH A RL+ + S D +S++
Sbjct: 764 SLPPSIILDAKAITNHIAKQILHRQRTTPEMMKH-RAVYHLAMRLVQTARNSRLDSDSLQ 822
Query: 614 HALQNLKESF 623
L+ LK+ +
Sbjct: 823 IYLKGLKKKY 832
Score = 370 (135.3 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 104/339 (30%), Positives = 172/339 (50%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ S +LF +L T+T GG+R LR+N+L+PL D ETI
Sbjct: 225 IDSSSAQNLELVTNNRD-----SRNGHTLFGVLNYTRTPGGSRRLRSNILEPLVDAETIK 279
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
TRLDC+ E + +E+LFFGL + KF +T+++L PK+ D K +++
Sbjct: 280 TRLDCVQEFLQDEELFFGLQAVISKF-LDTEQLLSILVQIPKQ--------DTVKTAESK 330
Query: 123 ISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
IS+II L+ + LL Y ++ E+ ++ I ++I VI++D +A
Sbjct: 331 ISNIIYLKHTLELVEPLKAALRRCNTSLLRAYYNAL-EDRRFGIILEKITAVINDDTRYA 389
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQ 242
+ RTQ+C+A+K I+ LDIARR++ + + + + + E+ R
Sbjct: 390 KGCLSMRTQKCYAVKPNINEFLDIARRTYTEIVDDIAGMITQLAEKYNLPLKTSFSSVR- 448
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + GKLPS F +V K N ++ +L +N R + + E Y T +
Sbjct: 449 GFFIQMNADCSALPNGKLPSEFTKVTKTRNTYSFTSADLIKMNERCQESLREIYHMTYLI 508
Query: 300 LEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAH--TIS 336
+ L++ I E + DM++ SFAH TIS
Sbjct: 509 VCKLLNEIYEHIHCLYKLSDIVSMLDMLL-SFAHACTIS 546
>UNIPROTKB|E2RJA9 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AAEX03004895 EMBL:AAEX03004896 Ensembl:ENSCAFT00000037908
Uniprot:E2RJA9
Length = 930
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 221/605 (36%), Positives = 360/605 (59%)
Query: 30 SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFP 89
+LF +L TKT GG+R LR+N+L+PL DIETIN RLDC+ EL+ +E+LFFGL + +F
Sbjct: 328 TLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRF- 386
Query: 90 KETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIIXXXXXXXXXXXXXKVLKDAQSF 149
+T+++L PK+ D NA +S+ I+++I LK+ +
Sbjct: 387 LDTEQLLSVLVQIPKQ------DTVNAAESK--ITNLIYLKHTLELVDPLKIALKNYNTP 438
Query: 150 LLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARR 209
LL Y E++++ I ++I VI++D + + RTQ+C+A++ I+ LDIARR
Sbjct: 439 LL-RAYCGSLEDKRFGIILEKIKTVINDDTRYMKGCLNMRTQKCYAVRSNINEFLDIARR 497
Query: 210 SFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYL--SIPHKDI-QGKLPSTFIQVVK 266
++ + + + + ++ E+ R GF++ +I + +LPS FI++ K
Sbjct: 498 TYTEIVDDIAGMISQLAEKYNLPLRTSFSSAR-GFFIQMTIDCTALPNNQLPSEFIKISK 556
Query: 267 HGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDM 326
++ ++ +L +N R + + E Y T + + L+ I E + DM
Sbjct: 557 VKSSYTFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDM 616
Query: 327 IVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPNNIFISEAANMV 385
++ SFAH + + Y RP FT+ LAI G HPILE I + I NN +I+E +N +
Sbjct: 617 LL-SFAHACT---LSDYVRPEFTDT--LAIKQGWHPILEKISVEKPIANNTYITEGSNFL 670
Query: 386 IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTF 445
I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA +S+ R+ ++IFTR+ T D++E+NSSTF
Sbjct: 671 IITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTF 730
Query: 446 MTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505
M EMKE A+++ N + +SLI++DELGR TS+ +G I ++ CE+LLSLKA+T+FA+H
Sbjct: 731 MKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAVCEYLLSLKAFTLFATHFLE 790
Query: 506 LSELATIYPNVKILHFYV-----VIRNNR-LDFKFQLKDGPRHVPHYGLLLAEVAGLPST 559
L + +YPNV+ +HF V RN + + ++L G +YGL AEV+ LP +
Sbjct: 791 LCHIEALYPNVENMHFEVQHVKDTSRNKEAILYTYKLCKGLTEEKNYGLKAAEVSSLPPS 850
Query: 560 VIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQ-DEESIRHALQN 618
++ A+ IT++IT+ ++ + + + + ++ + +YH A RL+ ++Q D +S+R L N
Sbjct: 851 IVLDAKEITAQITR-QILQNQRSTPEMERQRAVYHLATRLVQTARNSQLDPDSLRMYLSN 909
Query: 619 LKESF 623
LK+ +
Sbjct: 910 LKKKY 914
Score = 347 (127.2 bits), Expect = 2.1e-28, P = 2.1e-28
Identities = 99/334 (29%), Positives = 176/334 (52%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 306 IDSSSAQNLELL--INNQ---DCRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 360
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 361 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 411
Query: 123 ISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK+ + LL Y E++++ I ++I VI++D +
Sbjct: 412 ITNLIYLKHTLELVDPLKIALKNYNTPLL-RAYCGSLEDKRFGIILEKIKTVINDDTRYM 470
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ R
Sbjct: 471 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLAEKYNLPLRTSFSSAR- 529
Query: 243 GFYL--SIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ +I + +LPS FI++ K ++ ++ +L +N R + + E Y T +
Sbjct: 530 GFFIQMTIDCTALPNNQLPSEFIKISKVKSSYTFTSADLIKMNERCQESLREIYHMTYMI 589
Query: 300 LEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAH 333
+ L+ I E + DM++ SFAH
Sbjct: 590 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAH 622
>UNIPROTKB|F1P6X2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:AAEX03004895 EMBL:AAEX03004896
Ensembl:ENSCAFT00000032471 Uniprot:F1P6X2
Length = 798
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 221/605 (36%), Positives = 360/605 (59%)
Query: 30 SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFP 89
+LF +L TKT GG+R LR+N+L+PL DIETIN RLDC+ EL+ +E+LFFGL + +F
Sbjct: 196 TLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRF- 254
Query: 90 KETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIIXXXXXXXXXXXXXKVLKDAQSF 149
+T+++L PK+ D NA +S+ I+++I LK+ +
Sbjct: 255 LDTEQLLSVLVQIPKQ------DTVNAAESK--ITNLIYLKHTLELVDPLKIALKNYNTP 306
Query: 150 LLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARR 209
LL Y E++++ I ++I VI++D + + RTQ+C+A++ I+ LDIARR
Sbjct: 307 LL-RAYCGSLEDKRFGIILEKIKTVINDDTRYMKGCLNMRTQKCYAVRSNINEFLDIARR 365
Query: 210 SFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYL--SIPHKDI-QGKLPSTFIQVVK 266
++ + + + + ++ E+ R GF++ +I + +LPS FI++ K
Sbjct: 366 TYTEIVDDIAGMISQLAEKYNLPLRTSFSSAR-GFFIQMTIDCTALPNNQLPSEFIKISK 424
Query: 267 HGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDM 326
++ ++ +L +N R + + E Y T + + L+ I E + DM
Sbjct: 425 VKSSYTFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDM 484
Query: 327 IVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPNNIFISEAANMV 385
++ SFAH + + Y RP FT+ LAI G HPILE I + I NN +I+E +N +
Sbjct: 485 LL-SFAHACT---LSDYVRPEFTDT--LAIKQGWHPILEKISVEKPIANNTYITEGSNFL 538
Query: 386 IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTF 445
I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA +S+ R+ ++IFTR+ T D++E+NSSTF
Sbjct: 539 IITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTF 598
Query: 446 MTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505
M EMKE A+++ N + +SLI++DELGR TS+ +G I ++ CE+LLSLKA+T+FA+H
Sbjct: 599 MKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAVCEYLLSLKAFTLFATHFLE 658
Query: 506 LSELATIYPNVKILHFYV-----VIRNNR-LDFKFQLKDGPRHVPHYGLLLAEVAGLPST 559
L + +YPNV+ +HF V RN + + ++L G +YGL AEV+ LP +
Sbjct: 659 LCHIEALYPNVENMHFEVQHVKDTSRNKEAILYTYKLCKGLTEEKNYGLKAAEVSSLPPS 718
Query: 560 VIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQ-DEESIRHALQN 618
++ A+ IT++IT+ ++ + + + + ++ + +YH A RL+ ++Q D +S+R L N
Sbjct: 719 IVLDAKEITAQITR-QILQNQRSTPEMERQRAVYHLATRLVQTARNSQLDPDSLRMYLSN 777
Query: 619 LKESF 623
LK+ +
Sbjct: 778 LKKKY 782
Score = 347 (127.2 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 99/334 (29%), Positives = 176/334 (52%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 174 IDSSSAQNLELL--INNQ---DCRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 228
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 229 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 279
Query: 123 ISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK+ + LL Y E++++ I ++I VI++D +
Sbjct: 280 ITNLIYLKHTLELVDPLKIALKNYNTPLL-RAYCGSLEDKRFGIILEKIKTVINDDTRYM 338
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ R
Sbjct: 339 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLAEKYNLPLRTSFSSAR- 397
Query: 243 GFYL--SIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ +I + +LPS FI++ K ++ ++ +L +N R + + E Y T +
Sbjct: 398 GFFIQMTIDCTALPNNQLPSEFIKISKVKSSYTFTSADLIKMNERCQESLREIYHMTYMI 457
Query: 300 LEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAH 333
+ L+ I E + DM++ SFAH
Sbjct: 458 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAH 490
>MGI|MGI:1860077 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=ISS;IDA] [GO:0001541 "ovarian
follicle development" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0007126 "meiosis" evidence=IDA;IMP] [GO:0007129 "synapsis"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007292 "female gamete generation" evidence=IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:1860077 GO:GO:0005524 GO:GO:0005654
GO:GO:0007283 GO:GO:0006298 Reactome:REACT_120463 GO:GO:0001541
GO:GO:0030983 GO:GO:0007292 GO:GO:0007131 Reactome:REACT_27235
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 CTD:4438
HOGENOM:HOG000290656 HOVERGEN:HBG036910 OrthoDB:EOG4DR9BS
EMBL:AF298655 EMBL:AF178957 IPI:IPI00118045 RefSeq:NP_114076.1
UniGene:Mm.272226 ProteinModelPortal:Q99MT2 SMR:Q99MT2
STRING:Q99MT2 PhosphoSite:Q99MT2 PRIDE:Q99MT2
Ensembl:ENSMUST00000005630 GeneID:55993 KEGG:mmu:55993
InParanoid:Q99MT2 ChiTaRS:MSH4 NextBio:311726 Bgee:Q99MT2
CleanEx:MM_MSH4 Genevestigator:Q99MT2 GermOnline:ENSMUSG00000005493
Uniprot:Q99MT2
Length = 958
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 216/605 (35%), Positives = 355/605 (58%)
Query: 30 SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFP 89
+LF +L TKT GG+R LR+N+L+PL D+ETI+ RLDC+ EL+ +E+LFFGL + +F
Sbjct: 356 TLFGVLNYTKTAGGSRRLRSNILEPLVDVETISMRLDCVQELLQDEELFFGLQSVISRF- 414
Query: 90 KETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIIXXXXXXXXXXXXXKVLKDAQSF 149
+T+++L PK+ D NA +S+ I+++I LK+ +
Sbjct: 415 LDTEQLLSVLVQIPKQ------DTVNAAESK--ITNLIYLKHTLELVEPLKVTLKNCSTP 466
Query: 150 LLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARR 209
LL Y S+ E+ ++ I +I VI++D + + RTQ+C+A++ I LDIARR
Sbjct: 467 LLRAYYGSL-EDHRFGLILDKIKTVINDDARYMKGCLNMRTQKCYAVRSNISEFLDIARR 525
Query: 210 SFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDI---QGKLPSTFIQVVK 266
++ + + + + + E+ R GF++ + +LPS FI++ K
Sbjct: 526 TYTEIVDDIAGMIAQLAEKYSLPLRTSFSSSR-GFFIQMTTDCAALSSDQLPSEFIKISK 584
Query: 267 HGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDM 326
N+ ++ +L +N R + + E Y T + + L+ I E + DM
Sbjct: 585 VKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDM 644
Query: 327 IVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPNNIFISEAANMV 385
++ SFAH + + Y RP FT+ LAI G HPILE I + + NN +I+E +N++
Sbjct: 645 LL-SFAHACT---LSDYVRPEFTDT--LAIKQGWHPILEKISAEKPVANNTYITEGSNVL 698
Query: 386 IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTF 445
I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA +++ R+ +IFTR+ T D++E+NSSTF
Sbjct: 699 IITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYASFRIAAQIFTRISTDDDIETNSSTF 758
Query: 446 MTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505
M EMKE A+++ N +++SLI++DELGR T++ +G I+++ CEHLLS+KA+T+F +H
Sbjct: 759 MKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGISYAVCEHLLSIKAFTLFTTHFLE 818
Query: 506 LSELATIYPNVKILHFYVV-IRN---NR--LDFKFQLKDGPRHVPHYGLLLAEVAGLPST 559
L L +Y NV+ +HF V ++N N+ + + ++L G +YGL AE + LPS+
Sbjct: 819 LCHLDALYLNVENMHFEVQHVKNTSRNKDAILYTYKLSRGLTEEKNYGLKAAEASSLPSS 878
Query: 560 VIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI-CLKYSNQDEESIRHALQN 618
++ AR IT++IT++ ++ + +Q + +YH A RL+ + S + + +R L N
Sbjct: 879 IVLDARDITTQITRQILQNQRSSPEMDRQ-RAVYHLATRLVQAARNSQLEPDRLRTYLSN 937
Query: 619 LKESF 623
LK+ +
Sbjct: 938 LKKKY 942
>RGD|1309190 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0000794
"condensed nuclear chromosome" evidence=ISO] [GO:0000795
"synaptonemal complex" evidence=ISO;IBA] [GO:0001541 "ovarian
follicle development" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0007126 "meiosis" evidence=ISO] [GO:0007129
"synapsis" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007283 "spermatogenesis"
evidence=IEA;ISO] [GO:0007292 "female gamete generation"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1309190 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 IPI:IPI00870836 Ensembl:ENSRNOT00000014106
Uniprot:F1M9U4
Length = 958
Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
Identities = 213/605 (35%), Positives = 358/605 (59%)
Query: 30 SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFP 89
+LF +L TKT GG+R LR+N+L+PL D+ETI+ RLDC+ EL+ +E+LF+GL + +F
Sbjct: 356 TLFGVLNYTKTAGGSRRLRSNILEPLVDVETISMRLDCVQELLQDEELFYGLQSVISRF- 414
Query: 90 KETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIIXXXXXXXXXXXXXKVLKDAQSF 149
+T+++L PK+ D NA +S+ I+++I LK+ +
Sbjct: 415 LDTEQLLSVLVQIPKQ------DTVNAAESK--ITNLIYLKHTLELVDPLKVALKNCSTP 466
Query: 150 LLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARR 209
LL Y S+ E+ ++ I ++I VI++D + + RTQ+C+A++ I LDIARR
Sbjct: 467 LLRAYYGSL-EDHRFGLILEKIKTVINDDARYMKGCLNMRTQKCYAVRSNISEFLDIARR 525
Query: 210 SFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDI---QGKLPSTFIQVVK 266
++ + + + + ++ E+ R GF++ + +LPS FI++ K
Sbjct: 526 TYTEIVDDIAGMISQLAEKYSLPLRTSFSSAR-GFFIQMTTDCAALSSDQLPSEFIKISK 584
Query: 267 HGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDM 326
N+ ++ +L +N R + + E Y T + + L+ I E + DM
Sbjct: 585 VKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDM 644
Query: 327 IVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPNNIFISEAANMV 385
++ SFAH + + Y RP FT+ LAI G HPILE I + + NN +I+E +N++
Sbjct: 645 LL-SFAHACT---LSDYVRPEFTDT--LAIKQGWHPILEKISAEKPVANNTYITEGSNVL 698
Query: 386 IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTF 445
I+TGPNMSGKST+L+Q+ L I+AQIG +VPA +++ R+ +IFTR+ T D++E+NSSTF
Sbjct: 699 IITGPNMSGKSTFLKQIALCQIMAQIGSFVPAQYASFRIAAQIFTRISTDDDIETNSSTF 758
Query: 446 MTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505
M EMKE A+++ N +++SLI++DELGR T++ +G I+++ CEHLLS KA+T+F +H
Sbjct: 759 MKEMKEIAYILHNANDKSLILIDELGRGTNTEEGTGISYAVCEHLLSTKAFTLFTTHFLE 818
Query: 506 LSELATIYPNVKILHFYVV-IRN---NR--LDFKFQLKDGPRHVPHYGLLLAEVAGLPST 559
L + T+Y NV+ +HF V ++N N+ + + ++L G HYGL AE + LP +
Sbjct: 819 LCHIDTLYLNVENMHFEVQHVKNTSRNKDAILYTYKLSRGLTEEKHYGLKAAEASSLPPS 878
Query: 560 VIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDE-ESIRHALQN 618
++ AR IT++IT+ ++ + + + + + +YH A RL+ + ++Q E + +R L N
Sbjct: 879 IVLDAREITTQITR-QISQNRRSSPEMDRQRAVYHLATRLVQVARNSQLEPDRLRTYLSN 937
Query: 619 LKESF 623
LK+ +
Sbjct: 938 LKKKY 942
>UNIPROTKB|F1S9R2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:CU929611
EMBL:FP312934 Ensembl:ENSSSCT00000004176 Uniprot:F1S9R2
Length = 934
Score = 681 (244.8 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
Identities = 148/376 (39%), Positives = 238/376 (63%)
Query: 256 KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXX 315
KLPS FI++ K N+ ++ +L +N R + + E Y T + + L+ I E +
Sbjct: 550 KLPSEFIKISKVKNSYSFTSTDLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLY 609
Query: 316 XXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPN 374
DM++ SFAH + + Y RP FT+ LAI G HPILE I + + N
Sbjct: 610 KLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQGWHPILEKISVEKPVAN 663
Query: 375 NIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGT 434
N +I+E +N VI+TGPNMSGKSTYL+Q+ L I+AQIG YVPA +S+ R+ ++IFTR+ T
Sbjct: 664 NTYITEGSNFVIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRIST 723
Query: 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK 494
D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +G I ++ CE+LLSLK
Sbjct: 724 DDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLSLK 783
Query: 495 AYTIFASHMENLSELATIYPNVKILHFYVV-IRN---NR--LDFKFQLKDGPRHVPHYGL 548
A+T+FA+H L + +YPNV+ ++F V ++N N+ + + ++L G +YGL
Sbjct: 784 AFTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGL 843
Query: 549 LLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQ- 607
AE + LP +++ A+ IT++IT+ ++ + + + + ++ + +YH A RL+ ++Q
Sbjct: 844 KAAEASSLPPSIVLDAKEITTQITR-QILQNQRSTPEMERQRAVYHLATRLVQTARNSQL 902
Query: 608 DEESIRHALQNLKESF 623
D +S+R L NLK +
Sbjct: 903 DPDSLRTYLSNLKRKY 918
Score = 206 (77.6 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
Identities = 46/105 (43%), Positives = 71/105 (67%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ S +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 310 IDSSSAQNLELL--INNQ---DSRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 364
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVT 107
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ T
Sbjct: 365 MRLDCVQELLQDEELFFGLQSVIARF-LDTEQLLSVLVQIPKQDT 408
>UNIPROTKB|I3L5Z8 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 EMBL:CU929611 EMBL:FP312934
Ensembl:ENSSSCT00000023892 Uniprot:I3L5Z8
Length = 902
Score = 681 (244.8 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
Identities = 148/376 (39%), Positives = 238/376 (63%)
Query: 256 KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXX 315
KLPS FI++ K N+ ++ +L +N R + + E Y T + + L+ I E +
Sbjct: 518 KLPSEFIKISKVKNSYSFTSTDLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLY 577
Query: 316 XXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPN 374
DM++ SFAH + + Y RP FT+ LAI G HPILE I + + N
Sbjct: 578 KLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQGWHPILEKISVEKPVAN 631
Query: 375 NIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGT 434
N +I+E +N VI+TGPNMSGKSTYL+Q+ L I+AQIG YVPA +S+ R+ ++IFTR+ T
Sbjct: 632 NTYITEGSNFVIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRIST 691
Query: 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK 494
D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +G I ++ CE+LLSLK
Sbjct: 692 DDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLSLK 751
Query: 495 AYTIFASHMENLSELATIYPNVKILHFYVV-IRN---NR--LDFKFQLKDGPRHVPHYGL 548
A+T+FA+H L + +YPNV+ ++F V ++N N+ + + ++L G +YGL
Sbjct: 752 AFTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGL 811
Query: 549 LLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQ- 607
AE + LP +++ A+ IT++IT+ ++ + + + + ++ + +YH A RL+ ++Q
Sbjct: 812 KAAEASSLPPSIVLDAKEITTQITR-QILQNQRSTPEMERQRAVYHLATRLVQTARNSQL 870
Query: 608 DEESIRHALQNLKESF 623
D +S+R L NLK +
Sbjct: 871 DPDSLRTYLSNLKRKY 886
Score = 206 (77.6 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
Identities = 46/105 (43%), Positives = 71/105 (67%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ S +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 272 IDSSSAQNLELL--INNQ---DSRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 326
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVT 107
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ T
Sbjct: 327 MRLDCVQELLQDEELFFGLQSVIARF-LDTEQLLSVLVQIPKQDT 370
>DICTYBASE|DDB_G0283957 [details] [associations]
symbol:msh4 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0283957 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
EMBL:AAFI02000058 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 KO:K08740 SUPFAM:SSF48334
SUPFAM:SSF53150 OMA:MSGKSVY RefSeq:XP_638826.1
ProteinModelPortal:Q54QB8 EnsemblProtists:DDB0229912 GeneID:8624350
KEGG:ddi:DDB_G0283957 InParanoid:Q54QB8 ProtClustDB:CLSZ2728957
Uniprot:Q54QB8
Length = 1041
Score = 699 (251.1 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 153/446 (34%), Positives = 255/446 (57%)
Query: 196 IKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKD-IQ 254
IK G++GLLD+ ++++ + ++ ++ L Y+E+ +G+Y S+P K+
Sbjct: 597 IKDGVNGLLDVCKKTYKEITDDINKLTKYYKEQFKLPQLKLQHCQTKGYYYSLPCKNKAL 656
Query: 255 GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVX 314
LP+ F++ + + EL SL+ R++ E I + +E L++ R +S
Sbjct: 657 FHLPNVFVRSSYRNQKYYLFSEELTSLSRRSREVFEEIIILSAQSIEKLIEFYRSHISEL 716
Query: 315 XXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPH-FTENGPLAIDGGRHPIL-------ES 366
D +V+ +++ +D+ P F GPLAI G HP+ ES
Sbjct: 717 YNISESISLLDFLVSGALYSLQ---LDQSVCPEIFNGKGPLAIKSGYHPLQLKKSKKKES 773
Query: 367 IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVD 426
F+PN+ I+E A+ ++ G NMSGKSTY+QQV L+ I+A IG ++PA F+T+ +VD
Sbjct: 774 FSTCFVPNDTLINETASFQLIHGCNMSGKSTYIQQVALLTIVAHIGYFLPAEFATVPIVD 833
Query: 427 RIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSC 486
+I +R+GT DN++SN+STFMTEMKE +++++N +E SL+++DELGR TS+ DG +IAWS
Sbjct: 834 QIISRLGTSDNIQSNASTFMTEMKEISYILENTTESSLVIIDELGRGTSNMDGSSIAWSI 893
Query: 487 CEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR-LDFKFQLKDGPRHVPH 545
EHL + YT+F +H + L LAT YPN+++ HF V ++ L + + +G +
Sbjct: 894 SEHLSMIGCYTLFVTHYQQLLNLATFYPNIRVYHFQVSKDDSSGLKYNYLFSEGVSSIDS 953
Query: 546 YGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ-IQMLYHAA-------Q 597
YG+ AE+AG+ S VI++A++I + + K +IN Q I +H + Q
Sbjct: 954 YGVETAELAGIDSKVIQSAKTIRNLLESKS-NNNQINPNTNNQSINQYHHPSRDSYQLLQ 1012
Query: 598 RLICLKYSNQDEESIRHALQNLKESF 623
+L+ LK+S + +++ L LKE F
Sbjct: 1013 KLLNLKFSKLSDVQLKNYLLKLKEDF 1038
Score = 279 (103.3 bits), Expect = 8.5e-21, P = 8.5e-21
Identities = 94/380 (24%), Positives = 175/380 (46%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M IDA +++NLE+I HS+ G+ N +L+ + T T G+RLL + ++QP D ET
Sbjct: 396 MQIDAETIKNLELI---HSSKDGSRNC--TLYQSINNTSTSQGSRLLISAIVQPSNDFET 450
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-----N 115
I R + + +L+SN+++ F L+ L K ++ D+ L F + K+VT K ++ +
Sbjct: 451 IKHRQNAIKQLLSNQRVVFTLTPLLSKI-QDIDKTLLLFSQQNKQVTIKSIETSIKCFID 509
Query: 116 AKKSQTLISSIIXXXXXXXXXXX-XXKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
K L+ I ++K + NI + E+ K ++ ++
Sbjct: 510 FKNIFELLPKISNLLNSGTICDNPMLNLIKGKLNNETNNIL--IKESSKVLNVNLNF-QL 566
Query: 175 IDEDVLHARVPFVARTQQ---------CFAIKGGIDGLLDIARRSFCDTSEAVHNLANKY 225
+D H + + QQ IK G++GLLD+ ++++ + ++ ++ L Y
Sbjct: 567 SKQDQQHQQKEQQQQQQQQVNKINYKIIMYIKDGVNGLLDVCKKTYKEITDDINKLTKYY 626
Query: 226 REEXXXXXXXXXXXXRQGFYLSIPHKD-IQGKLPSTFIQVVKHGNNIHCSTLELASLNVR 284
+E+ +G+Y S+P K+ LP+ F++ + + EL SL+ R
Sbjct: 627 KEQFKLPQLKLQHCQTKGYYYSLPCKNKALFHLPNVFVRSSYRNQKYYLFSEELTSLSRR 686
Query: 285 NKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYT 344
++ E I + +E L++ R +S D +V+ +++ +D+
Sbjct: 687 SREVFEEIIILSAQSIEKLIEFYRSHISELYNISESISLLDFLVSGALYSLQ---LDQSV 743
Query: 345 RPH-FTENGPLAIDGGRHPI 363
P F GPLAI G HP+
Sbjct: 744 CPEIFNGKGPLAIKSGYHPL 763
>SGD|S000001891 [details] [associations]
symbol:MSH4 "Protein involved in meiotic recombination"
species:4932 "Saccharomyces cerevisiae" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA;IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IRD]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001891 GO:GO:0005524 EMBL:D50617
EMBL:BK006940 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U13999
PIR:A55201 RefSeq:NP_116652.1 ProteinModelPortal:P40965 SMR:P40965
DIP:DIP-2426N IntAct:P40965 MINT:MINT-565232 STRING:P40965
EnsemblFungi:YFL003C GeneID:850545 KEGG:sce:YFL003C
HOGENOM:HOG000094365 OMA:MSGKSVY OrthoDB:EOG4VHPFT NextBio:966313
Genevestigator:P40965 GermOnline:YFL003C Uniprot:P40965
Length = 878
Score = 593 (213.8 bits), Expect = 2.4e-57, P = 2.4e-57
Identities = 175/609 (28%), Positives = 291/609 (47%)
Query: 30 SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFP 89
SL+ L TT T G R LR ++LQPL D +I RL+ L+EL +N+ L L ++ P
Sbjct: 288 SLWKFLDTTSTKMGQRSLRNSILQPLTDRGSIEMRLEALEELKANDDLLQKLRLEMKSLP 347
Query: 90 KETDRVLCHFCFKPKKVTSKVLDVDN-AKKSQTLISSIIXXXXXXXXXXXXXKVLKDA-- 146
+ D K+ S++L +++ A K I+ ++ L D
Sbjct: 348 -DLD-----------KLFSRLLCINHSAIKPDQRINYVLLLKETLQSVKSLKDALNDQLI 395
Query: 147 QSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDI 206
QS L++ + + N+ I K I I+ED + A Q+ +A+K +GLLD+
Sbjct: 396 QSRLISET-KKIFNNDAIMEIEKLINSCINEDCVWASSAIQLLNQRSYAVKSDSNGLLDV 454
Query: 207 ARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQ---GKLPSTFIQ 263
+R+ + + E + R GFYL I ++ LP FI
Sbjct: 455 SRQIYKEVKEEFFREVEDLTAKNKINLDHNYDSAR-GFYLRIKRQEFTDDVATLPDVFIS 513
Query: 264 VVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXX 323
N I C+TL + N R K E + +E ++ L+D I +S
Sbjct: 514 RTIKKNYIECTTLNIIKKNARLKEVMEEILLLSEETVDELLDKIATHISELFMIAEAVAI 573
Query: 324 XDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISE-AA 382
D++ SF + + + YT P FT N L I RHP+LE + +F+PN I ++ ++
Sbjct: 574 LDLVC-SFTYNLKE---NNYTIPIFTNN--LLIRDSRHPLLEKVLKNFVPNTISSTKHSS 627
Query: 383 NMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNS 442
++ I+TG NMSGKS YL+QV LI I+AQ+G +PA + + V R+ R+ D++E S
Sbjct: 628 SLQIITGCNMSGKSVYLKQVALICIMAQMGSGIPALYGSFPVFKRLHARVCN-DSMELTS 686
Query: 443 STFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502
S F EMKE A+ + +++ +L+++DELGR +S +DGF ++ + EHLL +A ++H
Sbjct: 687 SNFGFEMKEMAYFLDDINTETLLILDELGRGSSIADGFCVSLAVTEHLLRTEATVFLSTH 746
Query: 503 MENLSELATIYPNVKILHFYVVIRN-NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVI 561
+++ ++ + P V LH V+ N N + +QL + + G+ + + P +
Sbjct: 747 FQDIPKIMSKKPAVSHLHMDAVLLNDNSVKMNYQLTQKSVAIENSGIRVVKKIFNPDIIA 806
Query: 562 ETARSITS--RITKKEVKRMEIN-CLQYKQIQMLYHAAQRLICLKY--SNQDEESIRHAL 616
E A +I S +I K + + N + K I + + LK N+ E L
Sbjct: 807 E-AYNIHSLLKIAKARTENEDSNGVVDQKTINQMKRIHNLVAILKECAGNEKEPLTLGKL 865
Query: 617 QNLKESFID 625
+ + FI+
Sbjct: 866 KEINSDFIE 874
Score = 218 (81.8 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 93/348 (26%), Positives = 148/348 (42%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VR LE++E + L SL+ L TT T G R LR ++LQPL D +
Sbjct: 265 MLIDSKTVRGLELVE---NKL---DKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGS 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP---KETDRVLC--HFCFKPKKVTSKVLDVDN 115
I RL+ L+EL +N+ L L ++ P K R+LC H KP + + VL +
Sbjct: 319 IEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQRINYVLLLKE 378
Query: 116 AKKSQTLISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVI 175
+S + S+ +++ QS L++ + + N+ I K I I
Sbjct: 379 TLQS---VKSL--------KDALNDQLI---QSRLISET-KKIFNNDAIMEIEKLINSCI 423
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEA----VHNLANKYR----E 227
+ED + A Q+ +A+K +GLLD++R+ + + E V +L K +
Sbjct: 424 NEDCVWASSAIQLLNQRSYAVKSDSNGLLDVSRQIYKEVKEEFFREVEDLTAKNKINLDH 483
Query: 228 EXXXXXXXXXXXXRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKS 287
RQ F D LP FI N I C+TL + N R K
Sbjct: 484 NYDSARGFYLRIKRQEF------TDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKE 537
Query: 288 AAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTI 335
E + +E ++ L+D I +S D++ SF + +
Sbjct: 538 VMEEILLLSEETVDELLDKIATHISELFMIAEAVAILDLVC-SFTYNL 584
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 542 (195.9 bits), Expect = 6.5e-57, Sum P(2) = 6.5e-57
Identities = 127/372 (34%), Positives = 200/372 (53%)
Query: 196 IKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQG 255
I G D LD R ++ + + +L + RE G+Y+ I +
Sbjct: 433 IADGYDAPLDELRNMSTNSHQFLIDLEQQERERTKINTVKVGYNRIHGYYIEISRAQAK- 491
Query: 256 KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXX 315
+ P+ +I+ N T EL + S+ R + E L+D + E +
Sbjct: 492 QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSRALAREKELYEQLLDTLIEKLIPLQ 551
Query: 316 XXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHND-FIPN 374
D ++N+ A T + P F + + I+ GRHPI+E++ D F+PN
Sbjct: 552 QCASAIANLD-VLNTLAERADTL---NFNAPQFCDYPIIKIEAGRHPIVENVMTDPFMPN 607
Query: 375 NIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGT 434
+ + E M+I+TGPNM GKSTY++Q LI +LA IG +VPA + + +DRIFTR+G
Sbjct: 608 DTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAYIGSFVPAKNAQLGPIDRIFTRIGA 667
Query: 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-L 493
D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ DG ++A++C +L + L
Sbjct: 668 ADDLASGRSTFMVEMTETAAILHNATEESLVLMDEVGRGTSTFDGLSLAYACASYLATKL 727
Query: 494 KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEV 553
KA+ +FA+H L+ LA+ VK +H V ++ F L++GP + YGL +A++
Sbjct: 728 KAFALFATHYFELTALASTLQAVKNVHLDAVEHEEKIIFLHALREGPAN-KSYGLQVAQL 786
Query: 554 AGLPSTVIETAR 565
AG+P +VI+ AR
Sbjct: 787 AGIPRSVIQHAR 798
Score = 72 (30.4 bits), Expect = 6.5e-57, Sum P(2) = 6.5e-57
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA + RNLE+I L + SL +L T T G+RLLR + +PL+D +
Sbjct: 274 IDANTRRNLELITNLQG------EEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQ 327
Query: 63 TRLDCLDELM 72
R + + L+
Sbjct: 328 QRQNAVSTLL 337
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 497 (180.0 bits), Expect = 5.8e-56, Sum P(2) = 5.8e-56
Identities = 147/454 (32%), Positives = 228/454 (50%)
Query: 148 SFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA-RVPFVARTQQCFAIKGG-IDG--- 202
S LLA + + EN SI + D++++ R F+ + + + G +D
Sbjct: 379 SLLLAECFSAFLENGYIRSIYDKCAP--DDELMETLRTAFLPTSNR--KVDGPFLDPTHH 434
Query: 203 --LLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQGKLPST 260
LL++ R S + +++L N Y+ G+Y+ +P K
Sbjct: 435 PKLLELNRLS-TNADVVINDLLNTYKRNTGINSLKLGKNNLIGYYVEVP-KSAPLLDSEV 492
Query: 261 FIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL-EALVDAIREDVSVXXXXXX 319
FI NNI +TLEL +L + + A E Y + E+ L L I
Sbjct: 493 FIHRQSLLNNIRYTTLELQNLEAQI-AKANENYRKLELELFRELCGKILASEGPLKEMIA 551
Query: 320 XXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFIS 379
D+I SFA + +Y RP + L I GGRHP +E + N F+PN++ +
Sbjct: 552 AIAELDVIA-SFAEIAVQR---KYVRPQVDNSNELRISGGRHPFVEQV-NAFVPNDLAFT 606
Query: 380 EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLE 439
A + ++TGPNM+GKSTYL+Q LI ILAQ+G +VPA + I VVDR+F+R+G DN+
Sbjct: 607 SAERVCVLTGPNMAGKSTYLRQNALITILAQMGSFVPADSAHIGVVDRVFSRIGASDNIA 666
Query: 440 SNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTI 498
STFM EM ETA ++ N + RSL+++DE+GR TS+ DG +IA + E+L S+ TI
Sbjct: 667 MGKSTFMVEMMETANIVNNATCRSLVILDEVGRGTSTLDGISIAQAVLEYLHDSVNCKTI 726
Query: 499 FASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPS 558
FA+H L +L + P +K V + + +++ G R YG+ A ++G+P
Sbjct: 727 FATHYNELCDLESKLPRMKCYSIEVKRWRDEVLLMYKIVPG-RGDNSYGIHTAMLSGIPE 785
Query: 559 TVIETARSITSRITKKEVKRMEI-NCLQYKQIQM 591
+I A I KE K + I N L ++I++
Sbjct: 786 AIIRRATEIA-----KE-KNLSIENSLSNERIRV 813
Score = 109 (43.4 bits), Expect = 5.8e-56, Sum P(2) = 5.8e-56
Identities = 30/94 (31%), Positives = 49/94 (52%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA+++R LE+IE T +K SL ++ T T GG RLL++ ++ PL +E I
Sbjct: 270 LDASTIRGLELIESQ------TPGEKNSLLQVIDQTCTAGGKRLLKSYIVSPLISVEEIQ 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
R D ++ E+L + L P + +R L
Sbjct: 324 ARQDKVEFFFIQEELRKKVRTELANIP-DAERAL 356
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 503 (182.1 bits), Expect = 2.2e-55, Sum P(2) = 2.2e-55
Identities = 125/341 (36%), Positives = 188/341 (55%)
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE- 301
G+Y+ + ++ +P +I+ N T EL K E I + LE
Sbjct: 477 GYYIEVTKSNLSA-IPDDYIRRQTLANAERFITPELKEYE--EKVLGAEDRI---VELEY 530
Query: 302 ALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
AL IR+ V+ ++ A RY RP E + + GGRH
Sbjct: 531 ALFQDIRQRVAAQGERIARTADRLATLDVLAALADVAHDHRYVRPTVDEGDAIVVTGGRH 590
Query: 362 PILESIHND--FIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
P++E+++ F+ N++ + N +VI+TGPNM+GKST+++QV LIV++AQ G +VPA
Sbjct: 591 PVVEALNRSERFVANDVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVPAD 650
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
++I VVDRIFTR+G DNL STFM EM ETA +++N + RSL+V+DE+GR TS+ D
Sbjct: 651 EASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTSTFD 710
Query: 479 GFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
G +IAW+ E+L + A T+FA+H L+ELA VK + V N+++ F +
Sbjct: 711 GVSIAWAVAEYLHDTERCAAKTLFATHYHELTELAVTRNRVKNCNVAVKEWNDQVIFLRK 770
Query: 536 LKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ +G H YG+ +A +AGLP VIE A+ I + K E
Sbjct: 771 IVEGG--ASHSYGIQVARLAGLPQEVIERAKEILHNLEKGE 809
Score = 100 (40.3 bits), Expect = 2.2e-55, Sum P(2) = 2.2e-55
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +S RNLE+ +A G ++ SL +L T T G R L+ + PL IE IN
Sbjct: 270 LDESSRRNLEL-----NATIGDGKRRGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKIN 324
Query: 63 TRLDCLDELMSNEQLFFGL 81
RLD ++EL+++ + G+
Sbjct: 325 ERLDAVEELVADAEFRQGV 343
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 503 (182.1 bits), Expect = 2.2e-55, Sum P(2) = 2.2e-55
Identities = 125/341 (36%), Positives = 188/341 (55%)
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE- 301
G+Y+ + ++ +P +I+ N T EL K E I + LE
Sbjct: 477 GYYIEVTKSNLSA-IPDDYIRRQTLANAERFITPELKEYE--EKVLGAEDRI---VELEY 530
Query: 302 ALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
AL IR+ V+ ++ A RY RP E + + GGRH
Sbjct: 531 ALFQDIRQRVAAQGERIARTADRLATLDVLAALADVAHDHRYVRPTVDEGDAIVVTGGRH 590
Query: 362 PILESIHND--FIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
P++E+++ F+ N++ + N +VI+TGPNM+GKST+++QV LIV++AQ G +VPA
Sbjct: 591 PVVEALNRSERFVANDVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVPAD 650
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
++I VVDRIFTR+G DNL STFM EM ETA +++N + RSL+V+DE+GR TS+ D
Sbjct: 651 EASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTSTFD 710
Query: 479 GFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
G +IAW+ E+L + A T+FA+H L+ELA VK + V N+++ F +
Sbjct: 711 GVSIAWAVAEYLHDTERCAAKTLFATHYHELTELAVTRNRVKNCNVAVKEWNDQVIFLRK 770
Query: 536 LKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ +G H YG+ +A +AGLP VIE A+ I + K E
Sbjct: 771 IVEGG--ASHSYGIQVARLAGLPQEVIERAKEILHNLEKGE 809
Score = 100 (40.3 bits), Expect = 2.2e-55, Sum P(2) = 2.2e-55
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +S RNLE+ +A G ++ SL +L T T G R L+ + PL IE IN
Sbjct: 270 LDESSRRNLEL-----NATIGDGKRRGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKIN 324
Query: 63 TRLDCLDELMSNEQLFFGL 81
RLD ++EL+++ + G+
Sbjct: 325 ERLDAVEELVADAEFRQGV 343
>WB|WBGene00001872 [details] [associations]
symbol:him-14 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0045143 "homologous
chromosome segregation" evidence=IMP] [GO:0051026 "chiasma
assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
EMBL:FO081697 GO:GO:0000239 GO:GO:0008094 GO:GO:0051026
GO:GO:0000712 GO:GO:0045143 GO:GO:0000795 EMBL:AF178755 PIR:E88197
RefSeq:NP_495451.1 UniGene:Cel.22695 ProteinModelPortal:Q23405
SMR:Q23405 STRING:Q23405 PaxDb:Q23405 EnsemblMetazoa:ZK1127.11
GeneID:174157 KEGG:cel:CELE_ZK1127.11 UCSC:ZK1127.11 CTD:174157
WormBase:ZK1127.11 eggNOG:COG0249 GeneTree:ENSGT00550000074897
HOGENOM:HOG000015880 InParanoid:Q23405 KO:K08740 OMA:GFFIQMT
NextBio:882779 GermOnline:ZK1127.11 Gene3D:3.30.420.110
SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 562 (202.9 bits), Expect = 4.9e-54, P = 4.9e-54
Identities = 164/582 (28%), Positives = 292/582 (50%)
Query: 3 IDATSVRNLEIIEP--LHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
ID S +LEI++ A +KR+L +L T T G RLLR+++LQP D+
Sbjct: 209 IDFVSWESLEIVDADDASKARKFQMKQKRTLMSVLNHTVTTNGYRLLRSSVLQPSTDVYL 268
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I +R + ++EL+ QL L + L + E DRV+ C + TS V ++S+
Sbjct: 269 IQSRQEAIEELIGKPQLKDKLRRTLSR-AHELDRVIA-MCIQ----TSTSWTV---RESE 319
Query: 121 TLISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCE---NEKYASIRKRIGEVIDE 177
I+ II +L A+ + +NI E + ++ I + E +D+
Sbjct: 320 AKINQIIKLMHTLKVIQGIRTLLHSAK--MKSNILIEKTEFLKDPRFDQIMNILVEKVDD 377
Query: 178 DVLHARVPFV-ARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXX 236
+L + + + +C+AI+ + LD+AR+++ + V + E
Sbjct: 378 SLLDGKKNSLHLQNTKCYAIRHFVAVQLDLARQTYEEIIRNVEETGAREIAEYFHGNSSV 437
Query: 237 XXXXRQ--GFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
Q GF+ + + + +P F+ V ++ + ++ ++ + N R + E +
Sbjct: 438 RLSFSQSRGFHYTFVTRQAESVTIPRYFLDVFRNRTTVTFNSRKVIAYNDRLEQVVAEMF 497
Query: 294 IRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYT-RPHFTENG 352
+ +++ + +++ ++ + V D + ++T R T +P F G
Sbjct: 498 LASDVIVCDMIEEMQPMIPVLYYAMDALSSIDFLCG-----LATYSDLRDTCKPTF---G 549
Query: 353 P-LAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
P +I GRHPIL+ ++ I N+ ++ I+TGPNM+GKSTYL+Q + I+AQ
Sbjct: 550 PSFSISQGRHPILDWDDSEKTITNDTCLTRDRRFGIITGPNMAGKSTYLKQTAQLAIMAQ 609
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IGC++PA+++++ + +RIF+RMG D L N S F +EM + A ++Q + SL+V+DEL
Sbjct: 610 IGCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDEL 669
Query: 471 GRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPN-VKILHFYVVIRNNR 529
R+TS+ +G AI ++ CE +L L++YT A+H +++ LA Y N + HF N
Sbjct: 670 ARSTSTEEGIAITYAICEKVLKLQSYTFLATHFLDIAALAN-YSNAIDNYHFLPQTDENS 728
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
K +L G P YG L E++ +P VIE A+S+ + +
Sbjct: 729 TK-KHKLLRGQYRGPLYGFELVELSTIPDEVIEHAQSLATEL 769
>UNIPROTKB|Q23405 [details] [associations]
symbol:him-14 "MutS protein homolog him-14" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IMP] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IMP]
[GO:0000239 "pachytene" evidence=IMP] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0051729 GO:GO:0006298
GO:GO:0030983 EMBL:FO081697 GO:GO:0000239 GO:GO:0008094
GO:GO:0051026 GO:GO:0000712 GO:GO:0045143 GO:GO:0000795
EMBL:AF178755 PIR:E88197 RefSeq:NP_495451.1 UniGene:Cel.22695
ProteinModelPortal:Q23405 SMR:Q23405 STRING:Q23405 PaxDb:Q23405
EnsemblMetazoa:ZK1127.11 GeneID:174157 KEGG:cel:CELE_ZK1127.11
UCSC:ZK1127.11 CTD:174157 WormBase:ZK1127.11 eggNOG:COG0249
GeneTree:ENSGT00550000074897 HOGENOM:HOG000015880 InParanoid:Q23405
KO:K08740 OMA:GFFIQMT NextBio:882779 GermOnline:ZK1127.11
Gene3D:3.30.420.110 SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 562 (202.9 bits), Expect = 4.9e-54, P = 4.9e-54
Identities = 164/582 (28%), Positives = 292/582 (50%)
Query: 3 IDATSVRNLEIIEP--LHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
ID S +LEI++ A +KR+L +L T T G RLLR+++LQP D+
Sbjct: 209 IDFVSWESLEIVDADDASKARKFQMKQKRTLMSVLNHTVTTNGYRLLRSSVLQPSTDVYL 268
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I +R + ++EL+ QL L + L + E DRV+ C + TS V ++S+
Sbjct: 269 IQSRQEAIEELIGKPQLKDKLRRTLSR-AHELDRVIA-MCIQ----TSTSWTV---RESE 319
Query: 121 TLISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCE---NEKYASIRKRIGEVIDE 177
I+ II +L A+ + +NI E + ++ I + E +D+
Sbjct: 320 AKINQIIKLMHTLKVIQGIRTLLHSAK--MKSNILIEKTEFLKDPRFDQIMNILVEKVDD 377
Query: 178 DVLHARVPFV-ARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXX 236
+L + + + +C+AI+ + LD+AR+++ + V + E
Sbjct: 378 SLLDGKKNSLHLQNTKCYAIRHFVAVQLDLARQTYEEIIRNVEETGAREIAEYFHGNSSV 437
Query: 237 XXXXRQ--GFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
Q GF+ + + + +P F+ V ++ + ++ ++ + N R + E +
Sbjct: 438 RLSFSQSRGFHYTFVTRQAESVTIPRYFLDVFRNRTTVTFNSRKVIAYNDRLEQVVAEMF 497
Query: 294 IRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYT-RPHFTENG 352
+ +++ + +++ ++ + V D + ++T R T +P F G
Sbjct: 498 LASDVIVCDMIEEMQPMIPVLYYAMDALSSIDFLCG-----LATYSDLRDTCKPTF---G 549
Query: 353 P-LAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
P +I GRHPIL+ ++ I N+ ++ I+TGPNM+GKSTYL+Q + I+AQ
Sbjct: 550 PSFSISQGRHPILDWDDSEKTITNDTCLTRDRRFGIITGPNMAGKSTYLKQTAQLAIMAQ 609
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IGC++PA+++++ + +RIF+RMG D L N S F +EM + A ++Q + SL+V+DEL
Sbjct: 610 IGCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDEL 669
Query: 471 GRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPN-VKILHFYVVIRNNR 529
R+TS+ +G AI ++ CE +L L++YT A+H +++ LA Y N + HF N
Sbjct: 670 ARSTSTEEGIAITYAICEKVLKLQSYTFLATHFLDIAALAN-YSNAIDNYHFLPQTDENS 728
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
K +L G P YG L E++ +P VIE A+S+ + +
Sbjct: 729 TK-KHKLLRGQYRGPLYGFELVELSTIPDEVIEHAQSLATEL 769
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 482 (174.7 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 97/226 (42%), Positives = 144/226 (63%)
Query: 343 YTRPHFTENGPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQ 401
Y RP + + I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q
Sbjct: 574 YCRPTLVQEAGIHIQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQ 633
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
LI ++A IG YVPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N +
Sbjct: 634 TALIALMAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATR 693
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILH 520
SL++MDE+GR TS+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H
Sbjct: 694 NSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVH 753
Query: 521 FYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
V + + F +++G YGL +A +AG+P VI+ AR+
Sbjct: 754 LDAVEHGDGIAFMHAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
Score = 104 (41.7 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFG-LSQFLRKFPKETDRVLCHFCFK 102
RLD + EL E +G L L++ + +R+L +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIG-DIERILARLALR 365
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 459 (166.6 bits), Expect = 4.6e-53, Sum P(2) = 4.6e-53
Identities = 125/391 (31%), Positives = 193/391 (49%)
Query: 196 IKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQG 255
IK G LD R ++ + + K RE G+Y+ + H +
Sbjct: 447 IKSGYSPELDELRDISSNSKQWIAAFQQKERERSGIKSLKVGYNKVFGYYIEVTHAN-SS 505
Query: 256 KLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYIRTEICLEALVDAIRED 310
++P +I+ N T EL L K+ A E I EI L RE
Sbjct: 506 QVPEDYIRKQTMANAERFFTPELKEKESLILTANEKAVALEYEIFAEIT-RTLSARSRE- 563
Query: 311 VSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILES-IHN 369
D++ S A + YTRP TE+ + I GRHP++ES +
Sbjct: 564 ---LQETAERIGTLDVLA-SLAEATEN---NNYTRPQLTEDCKILIRDGRHPVVESTVSG 616
Query: 370 DFIPNNIFISEAANM-VIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRI 428
F+PN+ + N ++VTGPNM+GKSTY++Q LI I+AQ+G +VPA ++++ ++D++
Sbjct: 617 GFVPNDTEMDCKENQFLLVTGPNMAGKSTYMRQTALIAIMAQVGSFVPASYASVGIIDQV 676
Query: 429 FTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCE 488
FTR+G D+L S STFM EM E A ++ N S +SL+++DE+GR TS+ DG++IA + E
Sbjct: 677 FTRIGAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEIGRGTSTYDGYSIAKAVVE 736
Query: 489 HLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPH 545
L + + +FA+H L+ L VK H V + L F ++ G
Sbjct: 737 FLHNRGKVGIRALFATHYHQLTALEEKLKRVKNYHIAVKEDGHELVFLRKIVPGATD-RS 795
Query: 546 YGLLLAEVAGLPSTVIETARSITSRITKKEV 576
YG+ +A +AG+P VIE A I + ++ V
Sbjct: 796 YGIHVARLAGVPEKVIERANEILKELERENV 826
Score = 125 (49.1 bits), Expect = 4.6e-53, Sum P(2) = 4.6e-53
Identities = 37/126 (29%), Positives = 66/126 (52%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ ++RNLEI++ + G N SL+ L T+T G R L+ LL+PL +E
Sbjct: 281 MILDSITLRNLEIVKNVRDE--GDEN---SLYRTLNCTRTPMGNRTLKKWLLKPLLSVEK 335
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++EL + L + + +L ++ +R++ + + D+ KKS
Sbjct: 336 INPRLDAIEELAEDSLLRYDIRDWLSDV-RDIERLVGRIVYG----NASARDLVALKKSL 390
Query: 121 TLISSI 126
++ S+
Sbjct: 391 GVVPSL 396
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 453 (164.5 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 126/420 (30%), Positives = 210/420 (50%)
Query: 161 NEKYASIRKRI---GEVID--EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTS 215
++K KRI G+V++ E+ L+ P + IK G + LD R + +
Sbjct: 374 HDKAKERAKRIDPCGDVLELLEEALYENPPLSVKEGNL--IKDGYNQKLDEYRDASRNGK 431
Query: 216 EAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCST 275
+ + L + RE G+Y+ + ++ + + N T
Sbjct: 432 DWIARLEQQEREYTGIRSLKVGFNKVFGYYIEVTKANLHLLEEGRYERKQTLTNAERYIT 491
Query: 276 LELASLNVRNKSAAGE-CYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHT 334
EL A C + E+ E L + +++ + D + FA T
Sbjct: 492 PELKEKEALILEAENNICELEYELFTE-LREKVKQYIPRLQQLAKQMSELDAL-QCFA-T 548
Query: 335 ISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHN--DFIPNNIFISEAANMVIVTGPNM 392
IS YT+P F+++ I+G RHP++E + + +++PNN + + M+++TGPNM
Sbjct: 549 ISENR--HYTKPEFSKDEVEVIEG-RHPVVEKVMDSQEYVPNNCMMGDNRQMLLITGPNM 605
Query: 393 SGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKET 452
SGKSTY++Q+ LI I+AQIGC+VPA + + + D+IFTR+G D+L S STFM EM E
Sbjct: 606 SGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEA 665
Query: 453 AFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELAT 511
+ N ++ SLI+ DE+GR TS+ DG A+A + E++ + A T+F++H L+ L
Sbjct: 666 KNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELTVLED 725
Query: 512 IYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
P +K +H N + F Q+K+G YG+ +A++A LP +I A+ I +
Sbjct: 726 KLPQLKNVHVRAEEYNGTVVFLHQIKEGAAD-KSYGIHVAQLAELPGDLIARAQDILKEL 784
Score = 107 (42.7 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S RNLE+ E + S NKK SL +L TKT G RLL+ + +PL +
Sbjct: 250 MKIDLYSKRNLELTETIRS-----KNKKGSLLWLLDETKTAMGGRLLKQWIDRPLIRVNQ 304
Query: 61 INTRLDCLDELMSN 74
I R + ++ LMS+
Sbjct: 305 IEERQEMVETLMSH 318
Score = 39 (18.8 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 167 IRKRIGEVIDEDVLHARVPF 186
+R+R+ EV D + L RV F
Sbjct: 325 LRERLKEVYDLERLAGRVAF 344
>CGD|CAL0002525 [details] [associations]
symbol:orf19.2579 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0002525 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000044 EMBL:AACQ01000043 KO:K08740
SUPFAM:SSF48334 SUPFAM:SSF53150 RefSeq:XP_718245.1
RefSeq:XP_718341.1 ProteinModelPortal:Q5A989 STRING:Q5A989
GeneID:3639992 GeneID:3640161 KEGG:cal:CaO19.10111
KEGG:cal:CaO19.2579 Uniprot:Q5A989
Length = 803
Score = 546 (197.3 bits), Expect = 1.9e-52, P = 1.9e-52
Identities = 156/538 (28%), Positives = 260/538 (48%)
Query: 96 LCHFCFKPKKVTSKVLDVDNAKKSQTLISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIY 155
L H C +KV S L+ + I++II K +++ S LL +
Sbjct: 269 LKHTC-DLEKVFSTFLEPRGLLSQEQEINNIILLKTVLQNTFVIRKSIQNVSSHLLVQV- 326
Query: 156 RSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTS 215
+ + E+E + I E I D A Q+ A+K G++GLLD++RR
Sbjct: 327 KQILEHENVQHLLAIINEYIRNDCQWANNSTELANQRANAVKSGVNGLLDVSRRIRETLL 386
Query: 216 EAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHC 273
E V L K EE R GF++ I + DI LP I VK I C
Sbjct: 387 EEVSELVAKLSEELEIFMEYRFEISR-GFFIKIKGNNTDINS-LPEVLINRVKKRKTIEC 444
Query: 274 STLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAH 333
+T+EL + R E + + +I + D++ SFA+
Sbjct: 445 TTIELMKQSSRYNDIVSEITTLNSTIIHDMYTSINSYTPILLMVSEAIGTLDLLC-SFAY 503
Query: 334 TISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNM 392
S + D YT P F + + I HPIL +++F+ NN + E + + ++TG NM
Sbjct: 504 FTSLQK-DSYTCPEFAKE--VTIMRSLHPILGGNNSNFVANNYSCNHELSRIHVITGANM 560
Query: 393 SGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKET 452
SGKS YL+Q+ +VI+AQ+GC+VPA ++ +R+ + +++R+ + DN++ N+S+F EM ET
Sbjct: 561 SGKSVYLRQIAYLVIMAQMGCFVPAEYARMRIFNSLYSRISS-DNVDINASSFSKEMSET 619
Query: 453 AFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512
A ++ + SLI++DELGR +S +DGF+I + E L+ +A I +H +++++
Sbjct: 620 AVILNDSDGDSLILIDELGRGSSLTDGFSICLAILEDLICKEATVITTTHFRDIAQVLAN 679
Query: 513 YPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGL-PSTVIETARSITSRI 571
V H V N +L+ K+ L G + YG+ AEV+ L P +IE ++ + + +
Sbjct: 680 KSCVVTAHMQTVETNGQLEMKYNLVLGRNGIVGYGIRFAEVSNLLPQELIEDSKVVANIL 739
Query: 572 -TKKEV---KRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFID 625
++K V K +++ + K + LY A + L N D LQ L+ F++
Sbjct: 740 RSRKPVHGDKELKLLSRRKKLVLELYFALNYIPKL---NCDMNYKIQLLQTLQSKFVE 794
Score = 365 (133.5 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 123/457 (26%), Positives = 211/457 (46%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +VR+LE+++ L GT+ L+ L T G R+LR ++LQP +
Sbjct: 192 MLIDTCTVRDLELVDSLSET--GTT-----LYSFLNCCLTKMGMRILRTSILQPSTHENS 244
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + + EL+++E + L K + ++V F +P+ + S+ +++N +
Sbjct: 245 IILRSESVQELINDEDALISIRSSL-KHTCDLEKVFSTF-LEPRGLLSQEQEINNIILLK 302
Query: 121 TLISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
T++ + K +++ S LL + + + E+E + I E I D
Sbjct: 303 TVLQNTFVIR----------KSIQNVSSHLLVQV-KQILEHENVQHLLAIINEYIRNDCQ 351
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXX 240
A Q+ A+K G++GLLD++RR E V L K EE
Sbjct: 352 WANNSTELANQRANAVKSGVNGLLDVSRRIRETLLEEVSELVAKLSEELEIFMEYRFEIS 411
Query: 241 RQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
R GF++ I + DI LP I VK I C+T+EL + R E
Sbjct: 412 R-GFFIKIKGNNTDINS-LPEVLINRVKKRKTIECTTIELMKQSSRYNDIVSEITTLNST 469
Query: 299 CLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLA--- 355
+ + +I + D++ SFA+ S + D YT P F + +
Sbjct: 470 IIHDMYTSINSYTPILLMVSEAIGTLDLLC-SFAYFTSLQK-DSYTCPEFAKEVTIMRSL 527
Query: 356 --IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GG + + N++ N+ E + + ++TG NMSGKS YL+Q+ +VI+AQ+GC
Sbjct: 528 HPILGGNNS--NFVANNYSCNH----ELSRIHVITGANMSGKSVYLRQIAYLVIMAQMGC 581
Query: 414 YVPAHFSTIRVVDRIFTRMGT--VDNLESNSSTFMTE 448
+VPA ++ +R+ + +++R+ + VD S+ S M+E
Sbjct: 582 FVPAEYARMRIFNSLYSRISSDNVDINASSFSKEMSE 618
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 484 (175.4 bits), Expect = 3.3e-52, Sum P(2) = 3.3e-52
Identities = 124/384 (32%), Positives = 191/384 (49%)
Query: 196 IKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQG 255
IK G LD R E + K RE G+Y+ + ++
Sbjct: 402 IKRGFSSELDEYRDLLEHAEERLKEFEEKERERTGIQKLRVGYNQVFGYYIEVTKANLD- 460
Query: 256 KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXX 315
K+P + + N+ T EL + AA E R E + L ++ E+V
Sbjct: 461 KIPDDYERKQTLVNSERFITPELKEFETKIM-AAKE---RIEELEKELFKSVCEEVK-KH 515
Query: 316 XXXXXXXXXDMIVNSFAHTISTKPVD-RYTRPHFTENGPLAIDGGRHPILESIHNDFIPN 374
D+ T++ + YT+P F+E+ L I GGRHP++E +F+ N
Sbjct: 516 KEVLLEISEDLAKIDALSTLAYDAIMYNYTKPVFSEDR-LEIKGGRHPVVERFTQNFVEN 574
Query: 375 NIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGT 434
+I++ V++TGPNMSGKST+++QV LI ++AQIG +VPA + + V DRIFTRMG
Sbjct: 575 DIYMDNEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTRMGA 634
Query: 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK 494
D+L STF+ EM E A ++ + +SL+++DE+GR TS+ DG +IAW+ E L+
Sbjct: 635 RDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTSTQDGVSIAWAISEELIKRG 694
Query: 495 AYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVA 554
+FA+H L+EL +P V+ V + F ++ DG YG+ +A++A
Sbjct: 695 CKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVAD-RSYGIEVAKIA 753
Query: 555 GLPSTVIETARSITSRITKKEVKR 578
G+P VI A I R K K+
Sbjct: 754 GIPDRVINRAYEILERNFKNNTKK 777
Score = 86 (35.3 bits), Expect = 3.3e-52, Sum P(2) = 3.3e-52
Identities = 27/96 (28%), Positives = 52/96 (54%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +V NL +I P ++ ++LF +L T+T G RLL+ +L PL D +
Sbjct: 250 MILDSATVENLSLI-P--------GDRGKNLFDVLNNTETPMGARLLKKWILHPLVDRKQ 300
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
I RL ++ L+ N+++ + L ++ +R++
Sbjct: 301 IEERLKAVERLV-NDRVSLEEMRNLLSNVRDVERIV 335
Score = 38 (18.4 bits), Expect = 3.7e-47, Sum P(2) = 3.7e-47
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 50 NLLQPLKDIETINTRLD 66
NLL ++D+E I +R++
Sbjct: 323 NLLSNVRDVERIVSRVE 339
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 520 (188.1 bits), Expect = 4.0e-52, Sum P(2) = 4.0e-52
Identities = 122/379 (32%), Positives = 198/379 (52%)
Query: 196 IKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQG 255
IK G D LD + + + + +L + + G+++ +P +
Sbjct: 424 IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIHGYFIELPRVQAE- 482
Query: 256 KLPSTFI--QVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSV 313
+ P+ +I Q +K T EL + + SA R + E L++ + ++
Sbjct: 483 QAPADYIRRQTLKGAERF--ITPELKAFEDKALSAQSRALAREKALYEELLERLIGHLAP 540
Query: 314 XXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESI-HNDFI 372
D++ N ++ +D RP F E+ L I+ GRHP++E + F+
Sbjct: 541 LQDSASALAELDVLANLAERALN---LD-LNRPRFVEHTCLHIEQGRHPVVEQVLETPFV 596
Query: 373 PNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRM 432
N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA + +VDRIFTR+
Sbjct: 597 ANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCELSLVDRIFTRI 656
Query: 433 GTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492
G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG ++AW+ E L
Sbjct: 657 GSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLSLAWAAAEDLAR 716
Query: 493 LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE 552
+A+T+FA+H L+ L P V +H N R+ F + GP YGL +A+
Sbjct: 717 TRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPAS-QSYGLAVAQ 775
Query: 553 VAGLPSTVIETARSITSRI 571
+AG+PS VI+ AR R+
Sbjct: 776 LAGVPSPVIQRAREHLKRL 794
Score = 50 (22.7 bits), Expect = 4.0e-52, Sum P(2) = 4.0e-52
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L G N +S+ +T +RL+ L +PL+D +
Sbjct: 266 LDGASRRNLELDINLSG---GRENTLQSVVDRCQTAMA---SRLMSRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
R + + L+ + F L L++ + +R+L
Sbjct: 320 ARQESIACLLERYR-FENLQPQLKEIG-DLERIL 351
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 499 (180.7 bits), Expect = 7.1e-52, Sum P(2) = 7.1e-52
Identities = 133/410 (32%), Positives = 206/410 (50%)
Query: 166 SIRKRIGEVID-EDVLHARV----PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHN 220
++R+++GE + D+L + P + R A G + LD R ++ +
Sbjct: 392 ALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIA--SGYNEELDEWRALADGATDYLER 449
Query: 221 LANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQGKL-PSTFI--QVVKHGNNIHCSTLE 277
L + RE G+Y+ I Q L P ++ Q +K+ E
Sbjct: 450 LEVRERERTGLDTLKVGFNAVHGYYIQISRG--QSHLAPINYMRRQTLKNAERYIIP--E 505
Query: 278 LASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTIST 337
L + ++ G+ + E L D + + D++VN A T
Sbjct: 506 LKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVN-LAERAYT 564
Query: 338 KPVDRYTRPHFTENGPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKS 396
YT P F + + I GRHP++E + N+ FI N + +S M+I+TGPNM GKS
Sbjct: 565 L---NYTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKS 621
Query: 397 TYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVM 456
TY++Q LI ++A IG YVPA I +DRIFTR+G D+L S STFM EM ETA ++
Sbjct: 622 TYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANIL 681
Query: 457 QNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPN 515
N +E SL++MDE+GR TS+ DG ++AW+C E+L + +KA T+FA+H L++L
Sbjct: 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEG 741
Query: 516 VKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
V +H + + + F ++DG YGL +A +AG+P VI+ AR
Sbjct: 742 VANVHLDALEHGDTIAFMHSVQDGAAS-KSYGLAVAALAGVPKEVIKRAR 790
Score = 70 (29.7 bits), Expect = 7.1e-52, Sum P(2) = 7.1e-52
Identities = 28/100 (28%), Positives = 46/100 (46%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L G N +L +L T T G+R+L+ L P++D +
Sbjct: 269 MDAATRRNLEITQNLAG---GAEN---TLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLL 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK 102
R + L + GL LR+ + +R+L +
Sbjct: 323 ERQQTIGAL---QDFTAGLQPVLRQVG-DLERILARLALR 358
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 471 (170.9 bits), Expect = 2.4e-51, Sum P(2) = 2.4e-51
Identities = 104/297 (35%), Positives = 179/297 (60%)
Query: 303 LVDAIREDVSVXX--XXXXXXXXXDM-IVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L A+RE+V V ++ ++ SFA T+S + +++ +P T + I G
Sbjct: 519 LFTALREEVKVFIPKLQHLAKVISELDVLQSFA-TVSEE--EQFVKPVLTTKREIFIKDG 575
Query: 360 RHPILESIHND--FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHP++E + N ++PN+ + E ++ ++TGPNMSGKSTY++Q+ L+ +++QIGC+VPA
Sbjct: 576 RHPVVEKVLNGKLYVPNDCIMPENMDVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPA 635
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + V D+IFTR+G D+L S STFM EM E + N SERSLI+ DE+GR TS+
Sbjct: 636 TEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLILFDEIGRGTSTY 695
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG A+A + EH+ + A T+F++H L+ L +K +H + N ++ F ++
Sbjct: 696 DGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVSAIEENGKVVFLHKI 755
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRIT-KKEV---KRMEINCLQYKQI 589
+DG YG+ +A++A LP ++I A+ + +++ ++E+ KR+E+ + + I
Sbjct: 756 QDGAAD-KSYGIHVAQLAELPDSLIARAKEVLAQLEGQEEIVIPKRVEVKAQEQEVI 811
Score = 96 (38.9 bits), Expect = 2.4e-51, Sum P(2) = 2.4e-51
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S RNLE+ E L T K SL +L TKT G R+L+ + +PL E
Sbjct: 254 MKIDVHSKRNLELTETLR-----TKEKTGSLLWLLDKTKTAMGGRMLKQWMERPLIQKER 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRK 87
I RL+ ++ +++ L L + L++
Sbjct: 309 IEERLEMVETFVNDYFLREDLKEKLKE 335
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 450 (163.5 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 124/411 (30%), Positives = 199/411 (48%)
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXX 236
+ L A P +AR A G D LD AR + + KY E
Sbjct: 413 DTALVAEPPLLARDGGFIA--PGYDSDLDEARELRDKGRGVIAGMQQKYAEHTGIASLKI 470
Query: 237 XXXXRQGFYL--SIPH--KDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC 292
G+++ + H K + L T+I N + +T+EL+ L R +A
Sbjct: 471 KHNNVLGYFIETTATHAAKMLNPPLSETYIHRQTTANQVRFTTVELSELETRILNAGNHA 530
Query: 293 YIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENG 352
+ +L A+ E + D+ + A + + RP +
Sbjct: 531 LEIEKRLYSSLSGAVLEQAARLNIAARGLAELDL-ATALADLARA---ENWCRPSVDPSR 586
Query: 353 PLAIDGGRHPILESI-----HNDFIPNNIFIS--EAANMVIVTGPNMSGKSTYLQQVCLI 405
AI+GGRHP++E + F+ N+ +S + A + ++TGPNM+GKSTYL+Q LI
Sbjct: 587 AFAIEGGRHPVVEHALRRQGGDPFVANDCDLSADKGAAIRLLTGPNMAGKSTYLRQNALI 646
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
+LAQIG YVPA + I VV ++F+R+G D+L STFM EM ETA ++ + +L+
Sbjct: 647 TLLAQIGSYVPADSAHIGVVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDHALV 706
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVV 524
++DE+GR T++ DG +IAW+ EHL + + +FA+H L+ LA V+ L V
Sbjct: 707 ILDEIGRGTATYDGLSIAWATLEHLHATNRCRALFATHYHELTALAATLDGVENLTVAVK 766
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ F +++ G YG+ +A++AGLP +V+ AR + ++ K E
Sbjct: 767 EWEGEVIFLHEVRKGAAD-RSYGVQVAQLAGLPPSVVARARVVLDQLEKSE 816
Score = 117 (46.2 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 35/96 (36%), Positives = 47/96 (48%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M IDA + RNLE+ L G SL ++ T T GG RLL L P ++++
Sbjct: 268 MQIDAATRRNLELTRSLSGERGG------SLLSVIDRTVTPGGARLLEQRLGSPSRNLDV 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
I+ RL LD + + L L LRK P + DR L
Sbjct: 322 IHARLSALDFCIDHSTLAADLRAALRKTP-DLDRAL 356
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 487 (176.5 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 129/402 (32%), Positives = 200/402 (49%)
Query: 171 IGEVIDEDVL--HARV---PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKY 225
+GE E L HA V P + R I+ G + LD R S+ + L +
Sbjct: 401 LGEFPQEQQLLEHAIVDNPPMLIRDGG--VIREGYNAELDEWRGLSEGASDYLVQLEARE 458
Query: 226 REEXXXXXXXXXXXXRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRN 285
+E G+Y+ + ++P + + N T EL +
Sbjct: 459 KERTGIATLKVGYNRVHGYYIEVSRLQ-SNQVPLNYQRRQTLKNMERYITPELKEYEEKV 517
Query: 286 KSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTR 345
S+ G+ + + L D I + D++ N FA T YT
Sbjct: 518 LSSQGKALALEKQLWDELFDLILPKLHELQDFARAAAELDVLSN-FAERAETLG---YTS 573
Query: 346 PHFTENGPLAIDGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCL 404
P + + I+ GRHP++E + FI N + + M+IVTGPNM GKSTY++QV L
Sbjct: 574 PELSSEIGVKIEAGRHPVVERVSQTPFIANPVTLHNQRRMLIVTGPNMGGKSTYMRQVAL 633
Query: 405 IVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSL 464
I ++A IGC+VPA +TI +DRIFTR+G D+L S STFM EM ETA ++ N + +SL
Sbjct: 634 ITLMAHIGCFVPAERATIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSL 693
Query: 465 IVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYV 523
++MDE+GR TS+ DG ++AWS E+L + A T+FA+H L++L + V +H
Sbjct: 694 VLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFELTQLPELMSGVYNVHLDA 753
Query: 524 VIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+ + + F +++G YGL +A +AG+P+ VI+ A+
Sbjct: 754 IEHEDTIAFMHAVQEGAAS-KSYGLQVAALAGVPARVIKAAK 794
Score = 77 (32.2 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L G N +L +L T T G+R+L+ + QPL+D I
Sbjct: 271 LDAATRRNLELTQNLSG---GRDN---TLAAVLDNTATAMGSRMLQRWIHQPLRDHALIL 324
Query: 63 TRLDCLDELM 72
R ++EL+
Sbjct: 325 ARQTAVNELL 334
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 483 (175.1 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 133/417 (31%), Positives = 215/417 (51%)
Query: 166 SIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKY 225
SIR RI + I+ D P + IK G++ LD RR + + + +
Sbjct: 393 SIRDRIAKEINNDP-----PLLINKGG--VIKDGVNEELDELRRISYSGKDYLLQIQQRE 445
Query: 226 REEXXXXXXXXXXXXRQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNV 283
E+ G+Y+ + HKD K+P +I+ N T EL
Sbjct: 446 SEQTGIPSLKVAYNNVFGYYIEVRNIHKD---KVPQEWIRKQTLVNAERYITQELKVYEE 502
Query: 284 RNKSAAGECYI-RTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDR 342
+ A + + T++ + LV A+ E + D ++ SFA+ +
Sbjct: 503 KILGAEDKILVLETQLYTD-LVQALTEFIPQIQINANQIARLDCLL-SFANVARE---NN 557
Query: 343 YTRPHFTENGPLAIDGGRHPILES---IHNDFIPNNIFISEAAN-MVIVTGPNMSGKSTY 398
Y RP +N L I GRHP++E I +I N++ + A+ ++I+TGPNM+GKS
Sbjct: 558 YIRPVIEDNDVLDIRQGRHPVIEKQLPIGEKYIANDVMLDSASQQIIIITGPNMAGKSAL 617
Query: 399 LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
L+Q LI +LAQIG +VPA + I +VD+IFTR+G DN+ STFM EM E A ++ N
Sbjct: 618 LRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNN 677
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPN 515
VS RSL++ DELGR TS+ DG +IAW+ E++ KA T+FA+H L+E+ +
Sbjct: 678 VSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKR 737
Query: 516 VKILHFYVVIRNNRLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+K + V +N++ F +L + G H +G+ +A++AG+P ++++ A +I ++
Sbjct: 738 IKNYNVSVKEVDNKVIFLRKLERGGSEH--SFGIHVAKMAGMPKSIVKRANTILKQL 792
Score = 75 (31.5 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D +VR+LE+I ++ G S SL +++ T + G RLL+ ++ PLKD +
Sbjct: 256 VRLDKFTVRSLELIGSMND---GGS----SLLNVIDRTISPMGARLLKRWMVFPLKDEKP 308
Query: 61 INTRLDCLD 69
IN RL+ ++
Sbjct: 309 INDRLNVVE 317
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 470 (170.5 bits), Expect = 2.6e-50, Sum P(2) = 2.6e-50
Identities = 113/292 (38%), Positives = 167/292 (57%)
Query: 287 SAAGECYIRTEICLEALVDAI-REDVSVXXXXXX-XXXXXDMIVN-----SFAHTISTKP 339
SA E YI+ E DAI +E +++ D+I SFAH + P
Sbjct: 485 SAINEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAP 544
Query: 340 VDRYTRPHFTENGP--LAIDGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSG 394
V Y RP E G + + G RHP +E + ++ FIPN++ + M I+TGPNM G
Sbjct: 545 VP-YVRPVILEKGQGRIVLKGARHPCIE-VQDEVAFIPNDVTFEKGKQMFHIITGPNMGG 602
Query: 395 KSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAF 454
KSTY++Q +IV++AQIGC+VP + + I +VD I R+G D+ STFM EM ETA
Sbjct: 603 KSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETAS 662
Query: 455 VMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIY 513
+++ SE SLI++DELGR TS+ DGF +AW+ E++ S + A+ +FA+H L+ LA
Sbjct: 663 ILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQV 722
Query: 514 PNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
P V LH + ++ L +++K G +G+ +AE+A P VIE+AR
Sbjct: 723 PTVNNLHVTALTSDDTLTMLYRVKAGVCD-QSFGIHVAELAAFPKHVIESAR 773
Score = 86 (35.3 bits), Expect = 2.6e-50, Sum P(2) = 2.6e-50
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +V+ L + + S++ +N +SL +L +T G RL+ + QPL D
Sbjct: 228 MVLDNAAVQALNLFQ---SSV-ENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNR 283
Query: 61 INTRLDCLDELMSNEQLFFGLSQ-FLRKFP 89
I RL+ ++ + + +L GL + LR+FP
Sbjct: 284 IEERLNLVEAFVVDTELRQGLQEDLLRRFP 313
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 470 (170.5 bits), Expect = 2.8e-50, Sum P(2) = 2.8e-50
Identities = 113/292 (38%), Positives = 167/292 (57%)
Query: 287 SAAGECYIRTEICLEALVDAI-REDVSVXXXXXX-XXXXXDMIVN-----SFAHTISTKP 339
SA E YI+ E DAI +E +++ D+I SFAH + P
Sbjct: 490 SAINEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAP 549
Query: 340 VDRYTRPHFTENGP--LAIDGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSG 394
V Y RP E G + + G RHP +E + ++ FIPN++ + M I+TGPNM G
Sbjct: 550 VP-YVRPVILEKGQGRIVLKGARHPCIE-VQDEVAFIPNDVTFEKGKQMFHIITGPNMGG 607
Query: 395 KSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAF 454
KSTY++Q +IV++AQIGC+VP + + I +VD I R+G D+ STFM EM ETA
Sbjct: 608 KSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETAS 667
Query: 455 VMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIY 513
+++ SE SLI++DELGR TS+ DGF +AW+ E++ S + A+ +FA+H L+ LA
Sbjct: 668 ILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQV 727
Query: 514 PNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
P V LH + ++ L +++K G +G+ +AE+A P VIE+AR
Sbjct: 728 PTVNNLHVTALTSDDTLTMLYRVKAGVCD-QSFGIHVAELAAFPKHVIESAR 778
Score = 86 (35.3 bits), Expect = 2.8e-50, Sum P(2) = 2.8e-50
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +V+ L + + S++ +N +SL +L +T G RL+ + QPL D
Sbjct: 233 MVLDNAAVQALNLFQ---SSV-ENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNR 288
Query: 61 INTRLDCLDELMSNEQLFFGLSQ-FLRKFP 89
I RL+ ++ + + +L GL + LR+FP
Sbjct: 289 IEERLNLVEAFVVDTELRQGLQEDLLRRFP 318
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 467 (169.5 bits), Expect = 9.0e-50, Sum P(2) = 9.0e-50
Identities = 128/435 (29%), Positives = 222/435 (51%)
Query: 150 LLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARR 209
L A I++ + +N + +K I ++ E L P ++ I+ G++ LD R
Sbjct: 379 LKAPIFKEILQN--FEDTKKIINDI--EKTLVEDPPL--HVKEGGLIREGVNAYLD-ELR 431
Query: 210 SFCDTSEA-VHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQGKLPSTFIQVVKHG 268
D +E + K R+E G+Y+ + +++ +PS F +
Sbjct: 432 FIRDNAETYLREYEKKLRQETGIQSLKIGYNKVMGYYIEVTKPNLK-YVPSYFRRRQTLS 490
Query: 269 NNIHCSTLELASLNVRNKSAAGECY-IRTEICLEALVDAIREDVSVXXXXXXXXXXXDMI 327
N+ +T EL L + SA + E+ E L + + +++ D I
Sbjct: 491 NSERFTTEELQRLEEKILSAQTRINDLEYELYKE-LRERVVKELDKVGNNASAVAEVDFI 549
Query: 328 VNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIV 387
S A K + +P E L I+ GRHP++E +++PN+ + + + ++
Sbjct: 550 -QSLAQIAYEKD---WAKPQIHEGYELIIEEGRHPVIEEFVENYVPNDTKLDRDSFIHVI 605
Query: 388 TGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMT 447
TGPNM+GKS+Y++QV ++ +L+ IG ++PA + I VVD +FTR+G+ D L STFM
Sbjct: 606 TGPNMAGKSSYIRQVGVLTLLSHIGSFIPARRAKIPVVDALFTRIGSGDVLALGVSTFMN 665
Query: 448 EMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENL 506
EM E + ++ N +E+SL+++DE+GR TS+ DG AI+ + +++ LKA T+ A+H +
Sbjct: 666 EMLEVSNILNNATEKSLVILDEVGRGTSTYDGIAISKAIVKYISEKLKAKTLLATHFLEI 725
Query: 507 SELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+EL VK H V + F + LK+G +G+ +A++AGLP V+E AR
Sbjct: 726 TELEGKIEGVKNYHMEVEKTPEGIRFLYILKEGKAE-GSFGIEVAKLAGLPEEVVEEARK 784
Query: 567 ITSRITKKEVKRMEI 581
I + +KE K+ +I
Sbjct: 785 ILRELEEKENKKEDI 799
Score = 84 (34.6 bits), Expect = 9.0e-50, Sum P(2) = 9.0e-50
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D +++ LEI+E L K SLF ++ T T G R L+ LL P + E
Sbjct: 258 VRLDIKAIKGLEILESLEG------RKDISLFKVIDRTLTGMGRRRLKFRLLSPFRSREK 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFL 85
I + + EL N + + Q L
Sbjct: 312 IERIQEGVQELKENREALLKIRQIL 336
Score = 37 (18.1 bits), Expect = 7.9e-45, Sum P(2) = 7.9e-45
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 14 IEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPL-KDI 58
+E L S + R L ++ + K + RLL L P+ K+I
Sbjct: 342 LERLVSKISSNMATPRELVYLKNSLKKVEELRLLLLELKAPIFKEI 387
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 472 (171.2 bits), Expect = 9.2e-50, Sum P(2) = 9.2e-50
Identities = 143/442 (32%), Positives = 229/442 (51%)
Query: 147 QSFLLANIYRSVCE-NEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLD 205
+S L A IY+++ E E Y I K I +D+ P V+ + IK G + +D
Sbjct: 370 KSVLFAEIYKNLPEMREVYNLIDKSI---VDD-------PPVS-PKDGGIIKNGYNPTVD 418
Query: 206 IARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQGKLPSTFIQVV 265
R++ + + + N K RE G+++ + ++ +P+ + +
Sbjct: 419 EYRKAREEGQDWIINYEKKERERTGIKSLKVNYNKVFGYFIEVTKANLH-LVPADYQRKQ 477
Query: 266 KHGNNIHCSTLELAS-----LNVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXX 320
N T EL L K A E + EI E L +ED+
Sbjct: 478 TMVNAERFITEELKHYENLILGASEKLANLEYELFCEIRSEIL--KYQEDLK---RAASA 532
Query: 321 XXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILE-SIHN-DFIPNNIFI 378
D ++ S A ++ D +TRP T L I GRHP++E S+ +F+PN++++
Sbjct: 533 VALLDFLI-SLA--VAAIEYD-FTRPVITAEPVLEIKNGRHPVVEKSVGRANFVPNDLYL 588
Query: 379 SEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDN 437
N ++++TGPNM+GKSTY++Q LIVILAQIG +VPA ++ + +VD+I TR+G D+
Sbjct: 589 DTKENSLLLITGPNMAGKSTYMRQAALIVILAQIGSFVPAEYARVGLVDKILTRIGATDD 648
Query: 438 LESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAY 496
L STFM EM E +++N + RSLI++DE+GR TS+ DG +IA + E++ +KA
Sbjct: 649 LAKGQSTFMVEMIECNNILRNATSRSLILLDEVGRGTSTYDGISIAEAIIEYIQKKIKAR 708
Query: 497 TIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPH-YGLLLAEVAG 555
T+F++H L+ L P VK +F V+++ + KF K P YG+ +A++AG
Sbjct: 709 TLFSTHYHELTGLEGEIPGVK--NFTVLVQEKGEEVKFLHKVVPGKTDKSYGIYVAKLAG 766
Query: 556 LPSTVIETARSITSRITKKEVK 577
LP V+E A I +R K +K
Sbjct: 767 LPREVVERAYEILARFEDKGLK 788
Score = 78 (32.5 bits), Expect = 9.2e-50, Sum P(2) = 9.2e-50
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 4 DATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINT 63
D ++ +NLEI+ + SL ++ T+T G R L+ L +PL +++ I
Sbjct: 250 DESTRKNLEILR-------NREDNSSSLLGIIDFTQTAMGARKLKEELTKPLLNLKAIAD 302
Query: 64 RLDCLDELMSNEQLFFGLSQFLR 86
RLD ++ L+++ +L L + L+
Sbjct: 303 RLDAVEILVNDYELRENLRENLK 325
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 458 (166.3 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 120/350 (34%), Positives = 192/350 (54%)
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL-E 301
G+Y+ + + ++ +P +I+ N T EL +A E + E L E
Sbjct: 469 GYYIEVSNANL-ADIPQNYIRKQTLVNAERFITPELKEYENLILNAK-ERLLEMETGLYE 526
Query: 302 ALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
+++ + S D ++++FA ++ + + Y RP F L I GRH
Sbjct: 527 QVLNQLGGFYSALLSNAAALASLD-VLSAFAE-VAVR--NGYVRPLFHSENSLVIHRGRH 582
Query: 362 PILESI--HNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
P++E + F N+I +S E ++I+TGPNM+GKSTYL+Q LIV++AQIG YVPA
Sbjct: 583 PMVEQGLGYGSFAANDISLSAEDCQIIILTGPNMAGKSTYLKQTALIVLMAQIGSYVPAE 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ + + DRIF+R+G ++L + STFM EM ETA ++ + RSL+++DE+GR TS+ D
Sbjct: 643 TAELCLTDRIFSRIGAREDLSAGQSTFMVEMVETASILNTATSRSLLILDEIGRGTSTYD 702
Query: 479 GFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
G AIA + E++ S L A T+FA+H L ELA P VK ++ + + +R + F
Sbjct: 703 GLAIAQAVVEYIHSQPSLHAKTLFATHYHELVELANYLPRVK--NYNIAVSEDRGEVVFL 760
Query: 536 LKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI-NC 583
+ P V YG+ +A++AGLP VI+ A + + + K +I NC
Sbjct: 761 HRIVPGGVDKSYGIHVAKLAGLPGWVIKRAYEVLTELENPAKKEPKIRNC 810
Score = 92 (37.4 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 30/69 (43%), Positives = 38/69 (55%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ ++ NLEI S+ G ++ K SL +L TKT G RLLR L QPL E
Sbjct: 260 MQIDSHTLSNLEIFR---SS--GGNSLKGSLLGVLDQTKTAMGGRLLRKFLGQPLLRQED 314
Query: 61 INTRLDCLD 69
I RL +D
Sbjct: 315 IEKRLSAVD 323
>DICTYBASE|DDB_G0275809 [details] [associations]
symbol:msh2 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0032302 "MutSbeta complex"
evidence=IEA;ISS;IBA] [GO:0032301 "MutSalpha complex"
evidence=IEA;ISS;IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=ISS;IBA] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0045128
"negative regulation of reciprocal meiotic recombination"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 dictyBase:DDB_G0275809 GO:GO:0005524 GO:GO:0042803
GO:GO:0003684 GenomeReviews:CM000151_GR EMBL:AAFI02000013
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:XP_643399.1
HSSP:P23909 ProteinModelPortal:Q553L4 STRING:Q553L4 PRIDE:Q553L4
EnsemblProtists:DDB0229897 GeneID:8619985 KEGG:ddi:DDB_G0275809
ProtClustDB:CLSZ2430933 Uniprot:Q553L4
Length = 937
Score = 467 (169.5 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 123/361 (34%), Positives = 191/361 (52%)
Query: 244 FYLSIPHKD---IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
F L I KD I+ K K G + +T E+ +LN K + E + +
Sbjct: 555 FLLRISRKDEVAIRDKKKYIVHATAKDG--VRFATREIDTLNEAYKKWSAEYLDKQDGLA 612
Query: 301 EALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFT-----ENGP-L 354
+ + V + D+ V + +H S P+ + RP ENG
Sbjct: 613 KRTLQIAASFVPLIEDLSSLIATLDVFV-TLSHVSSIAPIP-FIRPEIIPLGSDENGAGT 670
Query: 355 AIDGGRHPILESIHN-DFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIG 412
I GGRHP +E N +FI N+I ++ + I+TGPNM GKST+++QV LIV++AQIG
Sbjct: 671 VIIGGRHPCVEIQDNVNFIANDIDLTRGQSQFQIITGPNMGGKSTFIRQVGLIVLMAQIG 730
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
C+VPA +TI VVD I +R+G D+ STFM EM ET+++++ ++ SLI++DELGR
Sbjct: 731 CFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAEMLETSYILKVATKNSLIIIDELGR 790
Query: 473 ATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TS+ DGF +AW E++ + + + +FA+H L+ L+ + P VK LH +NN
Sbjct: 791 GTSTYDGFGLAWGIAEYICNQIGGFCLFATHFHELTILSDLLPMVKNLHVSASTQNNTFT 850
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQM 591
++++ GP +G+ +A +A PS VIE A+ KE++ E N L+ +
Sbjct: 851 LLYKVEQGPCD-QSFGIHVAILANFPSQVIENAKQ-----KAKELESFESNTLKQNHNKF 904
Query: 592 L 592
L
Sbjct: 905 L 905
Score = 85 (35.0 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 33/108 (30%), Positives = 57/108 (52%)
Query: 1 MNIDATSVRNLEIIE----PLHSALWG--------TSNKKRSLFHMLKTTKTIGGTRLLR 48
M +D++S + L II+ + +A G +SNK +SL+++L T G+RLL
Sbjct: 318 MKLDSSSFKGLHIIDLKDSSVSAAAGGGGAGGASSSSNKDQSLYNLLNQCNTPMGSRLLL 377
Query: 49 ANLLQPLKDIETINTRLDCLDELMSNEQLFFGL-SQFLRKFPKETDRV 95
+ QPL + E I RL+ ++ ++ +L L S L+K + DR+
Sbjct: 378 QWVKQPLLNAEEIEARLNFVEAFYNDLELRQSLRSNDLKKIG-DLDRL 424
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 464 (168.4 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 126/396 (31%), Positives = 204/396 (51%)
Query: 243 GFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y + K+ + + F V N + + EL+SLN GE + ++
Sbjct: 520 GYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVK 579
Query: 302 ALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGP--LAIDGG 359
+V+ V D +V SFAH + PV Y RP E G + +
Sbjct: 580 EIVNISSGYVEPMQTVNDVLAHLDAVV-SFAHVSNAAPVP-YVRPVILEKGKGRIIVKAS 637
Query: 360 RHPILESIHN-DFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RH +E H+ FIPN++ + M I+TGPNM GKSTY++Q +IV++AQIGC+VP
Sbjct: 638 RHACVEVQHDVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC 697
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +VD I R+G D+ STFM EM ETA ++++ ++ SLI++DELGR TS+
Sbjct: 698 ESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTY 757
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DGF +AW+ E++ + + A+ +FA+H L+ LA+ P V LH + L +Q+
Sbjct: 758 DGFGLAWAISEYIATNIGAFCMFATHFHELTALASQIPTVNNLHVTALTTEETLTMLYQV 817
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETAR----------SI-TSRITKKEVKRMEINCLQ 585
K G +G+ +AE+A P VIE A+ SI TS+ + + CL+
Sbjct: 818 KTGVCD-QSFGIHVAELANFPRHVIECAKQKALELEEFQSIGTSQGHDETQPAAKRRCLE 876
Query: 586 YKQIQ-MLYHAAQRLICLKYSNQDEESIRHALQNLK 620
+Q + ++ ++ + +++ EES+ L+ LK
Sbjct: 877 REQGEKIILEFLSKVKQVPFTDLSEESVSVKLKQLK 912
Score = 87 (35.7 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 27/90 (30%), Positives = 45/90 (50%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +VR L + + ++ T+ + SL L KT G RL+ + QPL D
Sbjct: 300 MKLDMAAVRALNLFQ---GSVEDTTGSQ-SLAAFLNKCKTAQGQRLVSQWIKQPLMDKNR 355
Query: 61 INTRLDCLDELMSNEQLFFGLSQ-FLRKFP 89
I RL+ ++ + + +L L + LR+FP
Sbjct: 356 IEERLNLVEAFVEDSELRRALQEDLLRRFP 385
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 456 (165.6 bits), Expect = 2.1e-49, Sum P(2) = 2.1e-49
Identities = 115/364 (31%), Positives = 188/364 (51%)
Query: 214 TSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHC 273
+++ + L +KYR G+Y+ + + FI N+I
Sbjct: 446 SNDLIQELRDKYRNITNIQSLKILYNNILGYYVEVSSSYLISD--KDFIHRQTLANSIRY 503
Query: 274 STLELASLNVRNKSAAGECYIRTEICLEA-LVDAIREDVSVXXXXXXXXXXXDMIVNSFA 332
+T EL +L + SA + I E+ + L I E DM+ SFA
Sbjct: 504 TTSELKALESKIISAR-DAAINLEVKIFGQLCTCIIEVADKITMTAHAIAEIDMLT-SFA 561
Query: 333 HTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNM 392
YT+P ++ I GRHP++E + F+ N+I +S + ++TGPNM
Sbjct: 562 ELAIQYS---YTKPIVDDSYEFNIKKGRHPVVER-NGKFVANDIDLSLMQRVHLITGPNM 617
Query: 393 SGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKET 452
+GKST+L+Q LI ILA IG +VPA + I V+D++F+R+G DN+ S STFM EM ET
Sbjct: 618 AGKSTFLRQNALIGILAHIGSFVPAQHAHIGVIDKVFSRVGASDNIASGHSTFMVEMTET 677
Query: 453 AFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELAT 511
A ++ +++S +++DE+GR T + DG +IAWS E + ++ K+ IFA+H LS+L
Sbjct: 678 AAIINQATDKSFVILDEIGRGTGTYDGLSIAWSVIEQIHNVNKSRAIFATHYHELSKLDR 737
Query: 512 IYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
N+K V N ++ F ++ G + YG+ +A++AG P +V++ A + S++
Sbjct: 738 YLENIKCFCMKVEEWNGKVVFLHEIIPGSTN-KSYGIHVAKLAGFPQSVLDRAEDLMSKL 796
Query: 572 TKKE 575
E
Sbjct: 797 KANE 800
Score = 90 (36.7 bits), Expect = 2.1e-49, Sum P(2) = 2.1e-49
Identities = 37/118 (31%), Positives = 55/118 (46%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M IDA ++RNLE+ L G SL + T T G RLL+ L PL
Sbjct: 267 MFIDAAALRNLELFCTQSGDLEG------SLISSIDYTITACGGRLLKRCLSAPLACSHA 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHF----CFKPKKVTSKVLDVD 114
IN RLD ++ +++ L G+ + LR + +R+L C PK + + L +D
Sbjct: 321 INRRLDIVEFFVNDRTLCRGVRETLRGIA-DIERILTRIKVGKC-SPKDLYALKLTLD 376
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 442 (160.7 bits), Expect = 2.3e-49, Sum P(2) = 2.3e-49
Identities = 114/336 (33%), Positives = 182/336 (54%)
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGECYIRTE 297
G+Y+ + ++ +LP FI+ + +T EL +V +K E + E
Sbjct: 474 GYYIEVA-SNLAPQLPKEFIRRQSRLHAERFTTQELQQFQDEVFSVEDKLQTLETKLFKE 532
Query: 298 ICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
+C I E + D +V S A + D Y RP + L+I
Sbjct: 533 LCFY-----IVEHRDLILKLSTAVADLDYVV-SLAELAAE--YD-YRRPLVDHSDALSIT 583
Query: 358 GGRHPILESI--HNDFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
G HP+ ++ FIPN+ + A M+++TGPNM+GKSTY++Q+ L+VI+AQ+G +
Sbjct: 584 KGMHPVALTLLDKGTFIPNDTVMHSAQTRMILLTGPNMAGKSTYIRQIALLVIMAQMGSF 643
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
+PA + I +VD+IFTR+G DNL STFM EM ETA ++ N ++RSL+++DE+GR T
Sbjct: 644 IPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVILDEIGRGT 703
Query: 475 SSSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG AIA + E LL KA T+FA+H + L+EL +V+ H V + +
Sbjct: 704 STYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKELTELEMHCQHVENFHAMVKENSGQPI 763
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
F +++ G +G+ +A++AG P +V+ A+ I
Sbjct: 764 FMYEIVKG-HSKKSFGIHVAKLAGFPLSVVSRAQQI 798
Score = 105 (42.0 bits), Expect = 2.3e-49, Sum P(2) = 2.3e-49
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID S NLE++ P+H ++K SL +++ T T G RLLR L+ P D++ I
Sbjct: 266 IDKASQTNLELLSPIHG-----EHRKGSLLQVMERTSTPMGGRLLRNTLINPFYDLKEIT 320
Query: 63 TRLDCLDELMSNEQL 77
R D ++ + L
Sbjct: 321 LRQDSVEFFLQQADL 335
>POMBASE|SPAC13F5.01c [details] [associations]
symbol:msh1 "mitochondrial MutS protein Msh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0006298 "mismatch repair" evidence=ISM]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0030983 "mismatched DNA binding" evidence=ISM] [GO:0043504
"mitochondrial DNA repair" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 PomBase:SPAC13F5.01c GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 EMBL:AB027833 PIR:T38256 RefSeq:NP_593649.2
ProteinModelPortal:O13921 STRING:O13921 PRIDE:O13921
EnsemblFungi:SPAC13F5.01c.1 GeneID:2542833 KEGG:spo:SPAC13F5.01c
HOGENOM:HOG000157750 OMA:LAMQCGD OrthoDB:EOG42591V NextBio:20803875
SUPFAM:SSF53150 Uniprot:O13921
Length = 941
Score = 449 (163.1 bits), Expect = 3.2e-49, Sum P(2) = 3.2e-49
Identities = 95/233 (40%), Positives = 148/233 (63%)
Query: 343 YTRPHFTENGPLAIDGGRHPILES--IHN--DFIPNNIFISEA-ANMVIVTGPNMSGKST 397
+ RP ++ + GRHPI+E H F PN+ F+ N+ ++TGPNM+GKST
Sbjct: 696 FVRPVVDDSHAHTVIQGRHPIVEKGLSHKLIPFTPNDCFVGNGNVNIWLITGPNMAGKST 755
Query: 398 YLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQ 457
+L+Q +I ILAQIG +VPA + I +VD+IF+R+G+ DNL STFM EM ET+F+++
Sbjct: 756 FLRQNAIISILAQIGSFVPASNARIGIVDQIFSRIGSADNLYQQKSTFMVEMMETSFILK 815
Query: 458 NVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK-AYTIFASHMENLSELATIYPNV 516
N + RS ++MDE+GR T++SDG AIA+ C ++L ++ + T+FA+H L+ L + NV
Sbjct: 816 NATRRSFVIMDEIGRGTTASDGIAIAYGCLKYLSTINHSRTLFATHAHQLTNLTKSFKNV 875
Query: 517 KILHFYVVI-RNNR-LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ + I R++ F ++LK G + H GL +AE+AG+P V+ A +
Sbjct: 876 ECYCTNLSIDRDDHTFSFDYKLKKGVNYQSH-GLKVAEMAGIPKNVLLAAEEV 927
Score = 100 (40.3 bits), Expect = 3.2e-49, Sum P(2) = 3.2e-49
Identities = 56/232 (24%), Positives = 96/232 (41%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M I ++++ LEI S+L+ + SL H + T T G+RLL L P +I
Sbjct: 343 MIIGESAMKGLEI----RSSLY-QNRYTGSLLHAINKTVTKSGSRLLTRRLCAPSTNIVE 397
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDN---AK 117
IN RLD +++ +L + L+K +T R+L H + DN K
Sbjct: 398 INNRLDLVEKFKLLPELCSKVINLLKK-SNDTHRILQHLLMGRGNSYDLLKMADNFSITK 456
Query: 118 KSQTLISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+ +L+S + D L+ N +V EN A ++++I E +
Sbjct: 457 EIHSLLSPLESSSAFRLLLLNMHP--HDELKQLINN---AVDEN---ALMKQKINEEEET 508
Query: 178 DVLHARVPFVARTQ--QCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYRE 227
+V+ + + + Q +K + DI R+SF + N N R+
Sbjct: 509 EVIAQEAEEILQDENAQVEIVKKSLSSEFDI-RQSFKENWVVKSNFNNNLRK 559
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 462 (167.7 bits), Expect = 3.2e-49, Sum P(2) = 3.2e-49
Identities = 117/383 (30%), Positives = 199/383 (51%)
Query: 196 IKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQG 255
I+ G+ L+ R + + + +L + R G+YLSI +
Sbjct: 493 IRAGVHPELEGMRGQLIEDRDWLVDLEARERARTGIQTLKVGFNKAFGYYLSISRGKAE- 551
Query: 256 KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXX 315
K P +++ N T EL R +A + T + + +R++
Sbjct: 552 KAPPEYLRKQTLTNEERYITPELKERETRILNAQQQ----TNQLEYDIFNILRQEAGRHV 607
Query: 316 XXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESI--HNDFIP 373
+++ A Y RP E + I+ GRHP++E F+P
Sbjct: 608 SALRQVARRVAALDALAGLAEVAVYHDYCRPVLGEGREVHIEAGRHPVIEQAIPAGFFVP 667
Query: 374 NNIFISEAA--NMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTR 431
N+ + A +++I+TGPNMSGKS++++QV LI +LAQ+G +VPA + + V DRIFTR
Sbjct: 668 NDARMGAEAEPDLIILTGPNMSGKSSFIRQVALIQLLAQVGAFVPARGAVLGVADRIFTR 727
Query: 432 MGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL 491
+G VD+L + STFM EM ETA ++ + + RSL+++DE+GR T++ DG AIAW+ E+L
Sbjct: 728 VGAVDDLATGQSTFMVEMTETANILNHATPRSLVLLDEIGRGTATFDGLAIAWAVAEYLA 787
Query: 492 S-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN--NRLDFKFQLKDGPRHVPHYGL 548
S ++ TIFA+H L+ELA++ V ++ V ++ +R+ F ++ G YG+
Sbjct: 788 SHIRCRTIFATHYHELNELASVVSGVA--NYQVTVQELADRIVFLHRVTPGGAD-RSYGI 844
Query: 549 LLAEVAGLPSTVIETARSITSRI 571
+ +AGLP +V+ AR++ +++
Sbjct: 845 EVGRLAGLPPSVVARARTVLAQV 867
Score = 85 (35.0 bits), Expect = 3.2e-49, Sum P(2) = 3.2e-49
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 3 IDATSVRNLEIIEPLHS-ALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+D + RNLE+ + + A +G SL L T+T+ G R LR LLQPL D I
Sbjct: 333 LDHQTRRNLELTQTVRDGAQYG------SLLWALDRTRTVMGGRALRRWLLQPLLDTRAI 386
Query: 62 NTRLDCLDEL 71
R D + EL
Sbjct: 387 GRRQDSVAEL 396
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 462 (167.7 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 114/320 (35%), Positives = 174/320 (54%)
Query: 251 KDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIRED 310
K ++ T + V K+G + + +L+SLN + E ++ ++
Sbjct: 531 KSLRNNKKFTTLDVQKNG--VRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGY 588
Query: 311 VSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGP--LAIDGGRHPILESIH 368
V D +V SFA T PV + RP E G L + RHP +E+
Sbjct: 589 VDPVQTLNEVIAQLDAVV-SFAVVSHTAPVP-FIRPKILEKGSGRLVLKAARHPCVEAQD 646
Query: 369 N-DFIPNNI-FISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVD 426
FIPN++ FIS I+TGPNM GKSTY++QV +IV++AQIGC+VP + + VVD
Sbjct: 647 EVAFIPNDVTFISGEKMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVD 706
Query: 427 RIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSC 486
+ R+G D+ STFM EM ETA ++++ SE SLI++DELGR TS+ DGF +AW+
Sbjct: 707 CVLARVGAGDSQIKGVSTFMAEMLETAAILRSASEDSLIIIDELGRGTSTYDGFGLAWAI 766
Query: 487 CEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPH 545
E++ + LK++ +FA+H L+ LA P V+ LH + ++ L +++K G
Sbjct: 767 SEYIATRLKSFCLFATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKKGVCD-QS 825
Query: 546 YGLLLAEVAGLPSTVIETAR 565
+G+ +AE+A P VI AR
Sbjct: 826 FGIHVAELASFPKHVIANAR 845
Score = 79 (32.9 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 26/90 (28%), Positives = 42/90 (46%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +V+ L + + GT SL +L +T G RL+ + QPL D
Sbjct: 300 MRLDNAAVQALNLFQGSCDDATGT----HSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNK 355
Query: 61 INTRLDCLDELMSNEQLFFGLSQ-FLRKFP 89
I RLD ++ + + +L + LR+FP
Sbjct: 356 IEERLDLVETFVEDSELRKSCQEDLLRRFP 385
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 435 (158.2 bits), Expect = 2.8e-48, Sum P(2) = 2.8e-48
Identities = 117/348 (33%), Positives = 189/348 (54%)
Query: 253 IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVS 312
I+ KL + FI + + + + +L L + +S + Y R+ C + LVD + E V+
Sbjct: 528 IRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQSVVDD-Y-RS--CQKELVDRVVETVT 583
Query: 313 ----VXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTEN--GPLAIDGGRHPILES 366
V D+++ SFA ++ P Y RP T + G + ++G RHP +E+
Sbjct: 584 SFSEVFEDLAGLLSEMDVLL-SFADLAASCPTP-YCRPEITSSDAGDIVLEGSRHPCVEA 641
Query: 367 IH-NDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRV 424
+FIPN+ + + IVTGPNM GKST+++QV +IV++AQ+G +VP ++I +
Sbjct: 642 QDWVNFIPNDCRLMRGKSWFQIVTGPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISI 701
Query: 425 VDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAW 484
D IF R+G D STFM EM ETA +++ S++SLI++DELGR TS+ DGF +AW
Sbjct: 702 RDCIFARVGAGDCQLRGVSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAW 761
Query: 485 SCCEHLLSLK-AYTIFASHMENLSELATIYPNVK-----ILHFYVVIR----NNRLDFKF 534
+ CEHL+ +K A T+FA+H L+ LA V + +F+V + +L +
Sbjct: 762 AICEHLVQVKRAPTLFATHFHELTALAQANSEVSGNTVGVANFHVSAHIDTESRKLTMLY 821
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN 582
+++ G +G+ +AE A P +V+ AR + + M IN
Sbjct: 822 KVEPGACD-QSFGIHVAEFANFPESVVALAREKAAELEDFSPSSMIIN 868
Score = 111 (44.1 bits), Expect = 2.8e-48, Sum P(2) = 2.8e-48
Identities = 34/97 (35%), Positives = 50/97 (51%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIG-GTRLLRANLLQPLKDIE 59
M +D+ ++R L ++E A NK SLF ++ T T G G RLL L QPL D+
Sbjct: 294 MRLDSAAMRALNVMESKTDA-----NKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLN 348
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
I TRLD + + L L Q L++ + +R+L
Sbjct: 349 EIKTRLDIVQCFVEEAGLRQDLRQHLKRI-SDVERLL 384
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 440 (159.9 bits), Expect = 4.3e-48, Sum P(2) = 4.3e-48
Identities = 115/385 (29%), Positives = 192/385 (49%)
Query: 194 FAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDI 253
F G + L ++AR D+ + L +KYR G+Y+ +
Sbjct: 428 FINPGCNERLAELARIQN-DSGVLIQRLRDKYRALTGISSLKILSNNLLGYYIEVSSS-- 484
Query: 254 QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY-IRTEICLEALVDAIREDVS 312
+F++ N+ +T EL L R SA E + +I + L I ++
Sbjct: 485 YKVSDESFVRRQSLANSTRYTTAELKELEERIVSAQSESADLEAQI-FKGLCSRIADECQ 543
Query: 313 VXXXXXXXXXXXDMIVNSFAHTISTKPVDR-YTRPHFTENGPLAIDGGRHPILESIHNDF 371
D++ T++ V+ Y RP ++ I GRHP++E + DF
Sbjct: 544 DIGLAAEAVAELDVLT-----TLAEVAVENNYVRPIVDDSKQFKIVRGRHPVVE-VGTDF 597
Query: 372 IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTR 431
I N+ +SE +M ++TGPNM+GKST+L+Q LI +LA IG +VPA + I V+D+IF+R
Sbjct: 598 IANDCDLSEGNSMSLITGPNMAGKSTFLRQNALIAVLAHIGSFVPAEHAHIGVIDKIFSR 657
Query: 432 MGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL 491
+G DN+ STFM EM ETA ++ + +SL+++DE+GR T+ +DG +IA + EH+
Sbjct: 658 VGASDNIALGHSTFMVEMVETAAILNQATSKSLVILDEIGRGTAINDGLSIALAAIEHIH 717
Query: 492 SL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLL 550
+ K+ I A+H L +L++ + N++ + + F +L G YG+ +
Sbjct: 718 DVTKSRAICATHYHELPKLSSHFENIRFFCLRIEEWKGEVVFLHELIPGISS-RSYGIHV 776
Query: 551 AEVAGLPSTVIETARSITSRITKKE 575
A +AG P +E A+ S+ + E
Sbjct: 777 AGLAGFPKGALERAKFFMSKFDEAE 801
Score = 95 (38.5 bits), Expect = 4.3e-48, Sum P(2) = 4.3e-48
Identities = 39/136 (28%), Positives = 63/136 (46%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID ++RNLE L S G KK SL + T T G+R+L+ L P+ IN
Sbjct: 270 IDGPALRNLE----LFSTQSG--EKKGSLISTIDHTVTAMGSRMLKRYLAFPVACHNVIN 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKV------TSKVLDV 113
R D ++ +SN L + + FP + +R+L F PK + SK+ ++
Sbjct: 324 GRQDAVEFFVSNRSLCEVIRGVINGFP-DIERILTRVKFSKCSPKDIHLLGRALSKIFEL 382
Query: 114 DN--AKKSQTLISSII 127
++ + +IS I+
Sbjct: 383 SRIISRSTHAIISKIL 398
Score = 45 (20.9 bits), Expect = 7.7e-43, Sum P(2) = 7.7e-43
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 186 FVARTQQCFAIKGGIDGLLDIAR 208
FV+ C I+G I+G DI R
Sbjct: 332 FVSNRSLCEVIRGVINGFPDIER 354
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 448 (162.8 bits), Expect = 4.4e-48, Sum P(2) = 4.4e-48
Identities = 122/386 (31%), Positives = 196/386 (50%)
Query: 243 GFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y + K+ + + F V N + + EL+SLN GE + ++
Sbjct: 520 GYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVK 579
Query: 302 ALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGP--LAIDGG 359
+V+ V D IV SFAH + PV Y RP E G + +
Sbjct: 580 EIVNISSGYVEPMQTLNDVLAHLDAIV-SFAHVSNAAPVP-YVRPVILEKGKGRIILKAS 637
Query: 360 RHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
RH +E + ++ FIPN++ + M I+TGPNM GKSTY++Q +IV++AQIGC+VP
Sbjct: 638 RHACVE-VQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP 696
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
+ + +VD I R+G D+ STFM EM ETA ++++ ++ SLI++DELGR TS+
Sbjct: 697 CESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTST 756
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DGF +AW+ +++ + + A+ +FA+H L+ LA P V LH + L +Q
Sbjct: 757 YDGFGLAWAISDYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQ 816
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHA 595
+K G +G+ +AE+A P VI A+ + + + + C + + A
Sbjct: 817 VKKGVCD-QSFGIHVAELANFPRHVIACAKQKALELEEFQNIGTSLGCDEAEP------A 869
Query: 596 AQRLICLKYSNQDEESIRHALQNLKE 621
A+R CL+ Q E+ I L +K+
Sbjct: 870 AKRR-CLE-REQGEKIILEFLSKVKQ 893
Score = 90 (36.7 bits), Expect = 4.4e-48, Sum P(2) = 4.4e-48
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +VR L + + ++ T+ + SL +L KT G RL+ + QPL D
Sbjct: 300 MKLDMAAVRALNLFQ---GSVEDTTGSQ-SLAALLNKCKTAQGQRLVNQWIKQPLMDRNR 355
Query: 61 INTRLDCLDELMSNEQLFFGLSQ-FLRKFP 89
I RL+ ++ + + +L L + LR+FP
Sbjct: 356 IEERLNLVEAFVEDSELRQSLQEDLLRRFP 385
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 415 (151.1 bits), Expect = 4.8e-48, Sum P(3) = 4.8e-48
Identities = 89/244 (36%), Positives = 149/244 (61%)
Query: 343 YTRPHFTENGP-LAIDGGRHPILESI---HNDFIPNNIFIS-EAANMVIVTGPNMSGKST 397
Y RP +N + I GRHP+++ + + ++PN +S + ++I+TGPNM GKS+
Sbjct: 305 YCRPVVKDNQQEIIIKNGRHPVIDVLLGEQDQYVPNTTNLSRDGERVMIITGPNMGGKSS 364
Query: 398 YLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQ 457
Y++QV LI ++AQIG YVPA ST+ +VD IFTRMG DN+ STFM E+ +TA +++
Sbjct: 365 YIKQVALITVMAQIGSYVPAEESTVGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIR 424
Query: 458 NVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516
+ RSL+++DELGR TS+ DG AIA++ EH ++ +++ T+F +H ++ EL +YP
Sbjct: 425 RATSRSLVILDELGRGTSTHDGIAIAYATLEHFITDVESLTLFVTHYPSVCELENVYPG- 483
Query: 517 KILHFYVVIRNNRLDFKFQL----KDGPRHVPH------------YGLLLAEVAGLPSTV 560
K+ ++++ N+ + Q ++ P V YGL +A++A +P +
Sbjct: 484 KVGNYHMAFLVNKEESAEQKGSEEEENPEFVTFLYQITKGVTARSYGLNVAKLADIPEEI 543
Query: 561 IETA 564
++ A
Sbjct: 544 LKKA 547
Score = 113 (44.8 bits), Expect = 4.8e-48, Sum P(3) = 4.8e-48
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 8 VRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDC 67
++NLEI++ + L K SL +L TKT G R L+ ++QPL IN RLD
Sbjct: 1 MKNLEILQN-QTDL----KTKGSLLWVLDHTKTSFGRRRLKKWVIQPLMKCSEINARLDA 55
Query: 68 LDELMSNEQLFFG-LSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSI 126
+ E++ +E FG + L K P + +R LC K L V + + I ++
Sbjct: 56 VSEILLSESSVFGQIQNLLCKLP-DLERGLCSVFHKKCSTQEFFLIVSTLSRLDSEIQAL 114
Query: 127 I 127
+
Sbjct: 115 V 115
Score = 44 (20.5 bits), Expect = 4.8e-48, Sum P(3) = 4.8e-48
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 336 STKPVDRYTRPHFTEN 351
STK V R+ P TEN
Sbjct: 232 STKAVSRFHSPFITEN 247
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 422 (153.6 bits), Expect = 5.0e-48, Sum P(3) = 5.0e-48
Identities = 97/261 (37%), Positives = 152/261 (58%)
Query: 343 YTRPHFTENGPLAIDGGRHPILESI---HNDFIPNNIFIS-EAANMVIVTGPNMSGKSTY 398
Y RP E + I GRHP+++ + + ++PN+ +S ++ ++I+TGPNM GKS+Y
Sbjct: 769 YCRPSLQEERKIVIKNGRHPVIDVLLGEQDQYVPNSTNLSGDSERVMIITGPNMGGKSSY 828
Query: 399 LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
++QV LI I+AQIG YVPA +TI +VD IFTRMG DN+ STFM E+ +TA +++
Sbjct: 829 IKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELMDTAEIIRQ 888
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIY-PNV 516
+ +SL+++DELGR TS+ DG AIA++ EH + +K+ T+F +H + EL Y V
Sbjct: 889 ATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYLQEV 948
Query: 517 KILH--FYVVIRNNRLD-----------FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIET 563
H F V N+ D F +Q+ G YGL +A++A +P +++
Sbjct: 949 GNYHMGFLVNEDENKEDPGEEPVPDFVTFLYQITRGIA-ARSYGLNVAKLADVPGEILKK 1007
Query: 564 ARSITSRITKK-EVKRMEINC 583
A S + + +KR + C
Sbjct: 1008 AASKSKELEGLVNMKRKRLKC 1028
Score = 138 (53.6 bits), Expect = 5.0e-48, Sum P(3) = 5.0e-48
Identities = 40/104 (38%), Positives = 57/104 (54%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNK-KRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M I+ T++RNLEI++ T K K SL +L TKT G R L+ ++QPL +
Sbjct: 458 MTINGTTLRNLEILQNQ------TDMKTKGSLLWVLDHTKTSFGRRKLKKWVVQPLLKLR 511
Query: 60 TINTRLDCLDELMSNEQLFFG-LSQFLRKFPKETDRVLCHFCFK 102
IN RLD + E++ +E FG + LRK P + +R LC K
Sbjct: 512 EINARLDAVSEVLHSESSVFGQIENHLRKLP-DIERGLCSIYHK 554
Score = 39 (18.8 bits), Expect = 5.0e-48, Sum P(3) = 5.0e-48
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 336 STKPVDRYTRPHFTEN 351
STK V R+ P EN
Sbjct: 696 STKAVSRFHSPFIVEN 711
Score = 37 (18.1 bits), Expect = 1.7e-37, Sum P(3) = 1.7e-37
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 141 KVLKDAQ-SFLLANIYRSVCENEKYASIRKR 170
+V+ D SFLL +CENE+ +K+
Sbjct: 281 EVMTDTSTSFLLC-----ICENEENVKDKKK 306
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 453 (164.5 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 125/378 (33%), Positives = 192/378 (50%)
Query: 196 IKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQG 255
I+ G D LD R+ E + L +K RE G+Y+ I + +
Sbjct: 518 IRPGFDQRLDALIRASRHAQEFIDRLESKERERTGIRSLKVGYNQVFGYYIEIS-RAVDA 576
Query: 256 KL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVX 314
KL P+ + + N T EL A + + L D ++ +
Sbjct: 577 KLIPAHYERKQTLVNAERYVTEELKYYEGLLSDARLKLVDLERDIFQRLCDELQPHLDRL 636
Query: 315 XXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILE-SIHNDFIP 373
D + + A ++ + RY +P + L I GRHP++E ++ FI
Sbjct: 637 RATIAAVARIDALA-ALAE-VAVR--GRYVQPRLRTDRVLRIKQGRHPVVERTLSEPFIG 692
Query: 374 NNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRM 432
N+I + E A ++I+TGPNM+GKST+L+QV LI ++AQIG +VPA + I +VDRIFTR+
Sbjct: 693 NDIDLDGEQAQILIITGPNMAGKSTFLRQVALITLMAQIGSFVPADEAEIGLVDRIFTRI 752
Query: 433 GTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492
G D++ + STFM EM ETA ++ + RSLI++DE+GR TS+ DG AIA + E++
Sbjct: 753 GAQDDIATGQSTFMVEMTETAALLMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYIHD 812
Query: 493 ---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLL 549
L T+FA+H L L P V+ H V R+ R+ F +L+ G YG+
Sbjct: 813 HPRLGCRTLFATHYHELIALERELPRVRNYHMAAVERDGRVVFLHELRPGGAD-RSYGIH 871
Query: 550 LAEVAGLPSTVIETARSI 567
+AE+AG+P VI A ++
Sbjct: 872 VAELAGIPPEVIRRASAL 889
Score = 85 (35.0 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 30/96 (31%), Positives = 43/96 (44%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLE++E G K SL +L T T G RLLR + QPL IE
Sbjct: 335 MLLDPQTRRNLELLES-----GGRQGAKASLIAVLDRTCTAMGARLLRRWITQPLIVIEP 389
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
+ R + L++ + L P + +R L
Sbjct: 390 LQVRQHAVARLVAETMARLEVRSALADLP-DMERAL 424
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 447 (162.4 bits), Expect = 5.7e-48, Sum P(2) = 5.7e-48
Identities = 124/389 (31%), Positives = 200/389 (51%)
Query: 243 GFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYIRTEI 298
G+Y + K+ + + F V N + + +L SLN +NK+ E + I
Sbjct: 520 GYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEA--QNAI 577
Query: 299 CLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGP--LAI 356
E +V+ V D +V SFAH PV Y RP E G + +
Sbjct: 578 VKE-IVNISSGYVEPMQTLNDVLAQLDAVV-SFAHVSDAAPVP-YVRPVILEKGRGRITL 634
Query: 357 DGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGC 413
RH +E + ++ FIPN++ + M I+TGPNM GKSTY++Q ++V++AQIGC
Sbjct: 635 KASRHACVE-VQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGC 693
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VP ++ + +VD I R+G D+ STFM EM ETA ++++ ++ SLI++DELGR
Sbjct: 694 FVPCEWAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DGF +AW+ E++ + + A+ +FA+H L+ LA P V LH + L
Sbjct: 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTM 813
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
+Q+K G +G+ +AE+A P VIE A+ E++ + N + ++ +
Sbjct: 814 LYQVKKGVCD-QSFGIHVAELANFPRHVIECAKQ-----KALELEEFQ-NIGKPQECDEM 866
Query: 593 YHAAQRLICLKYSNQDEESIRHALQNLKE 621
AA+R C Q E+ I+ L +K+
Sbjct: 867 EPAAKR--CYLEREQGEKIIQEFLSKVKQ 893
Score = 90 (36.7 bits), Expect = 5.7e-48, Sum P(2) = 5.7e-48
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +VR L + + ++ TS + SL +L KT G RL+ + QPL D
Sbjct: 300 MKLDIAAVRALNLFQ---GSVEDTSGSQ-SLAALLNKCKTPQGQRLVNQWIKQPLMDKNR 355
Query: 61 INTRLDCLDELMSNEQLFFGLSQ-FLRKFP 89
I RL+ ++ + + +L L + LR+FP
Sbjct: 356 IEERLNLVEAFVEDAELRQNLQEDLLRRFP 385
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 449 (163.1 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 123/390 (31%), Positives = 201/390 (51%)
Query: 243 GFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYIRTEI 298
G+Y + K+ + + F V N + + +L SLN +NK+ E +
Sbjct: 520 GYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQ---DA 576
Query: 299 CLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGP--LAI 356
++ +V+ V D +V SFAH + PV Y RP E G + +
Sbjct: 577 IVKEIVNISSGYVEPMQTLNDVLAQLDAVV-SFAHVSNGAPVP-YVRPAILEKGQGRIIL 634
Query: 357 DGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGC 413
RH +E + ++ FIPN+++ + M I+TGPNM GKSTY++Q +IV++AQIGC
Sbjct: 635 KASRHACVE-VQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGC 693
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VP + + +VD I R+G D+ STFM EM ETA ++++ ++ SLI++DELGR
Sbjct: 694 FVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DGF +AW+ E++ + + A+ +FA+H L+ LA P V LH + L
Sbjct: 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTM 813
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ-IQM 591
+Q+K G +G+ +AE+A P VIE A+ +K ++ E + Q +
Sbjct: 814 LYQVKKGVCD-QSFGIHVAELANFPKHVIECAK-------QKALELEEFQYIGESQGYDI 865
Query: 592 LYHAAQRLICLKYSNQDEESIRHALQNLKE 621
+ AA++ C Q E+ I+ L +K+
Sbjct: 866 MEPAAKK--CYLEREQGEKIIQEFLSKVKQ 893
Score = 85 (35.0 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +VR L + + ++ T+ + SL +L KT G RL+ + QPL D
Sbjct: 300 MKLDIAAVRALNLFQ---GSVEDTTGSQ-SLAALLNKCKTPQGQRLVNQWIKQPLMDKNR 355
Query: 61 INTRLDCLDELMSNEQLFFGLSQ-FLRKFP 89
I RL+ ++ + + +L L + LR+FP
Sbjct: 356 IEERLNLVEAFVEDAELRQTLQEDLLRRFP 385
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 446 (162.1 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 112/333 (33%), Positives = 178/333 (53%)
Query: 243 GFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYIRTEI 298
G+Y + K+ + + F V N + + +L SLN +NK+ E +
Sbjct: 520 GYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQ---DA 576
Query: 299 CLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGP--LAI 356
++ +V+ V D +V SFAH + PV Y RP E G + +
Sbjct: 577 IVKEIVNISSGYVEPMQTLNDVLAQLDAVV-SFAHVSNGAPVP-YVRPAILEKGQGRIIL 634
Query: 357 DGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGC 413
RH +E + ++ FIPN+++ + M I+TGPNM GKSTY++Q +IV++AQIGC
Sbjct: 635 KASRHACVE-VQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGC 693
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VP + + +VD I R+G D+ STFM EM ETA ++++ ++ SLI++DELGR
Sbjct: 694 FVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DGF +AW+ E++ + + A+ +FA+H L+ LA P V LH + L
Sbjct: 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTM 813
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+Q+K G +G+ +AE+A P VIE A+
Sbjct: 814 LYQVKKGVCD-QSFGIHVAELANFPKHVIECAK 845
Score = 85 (35.0 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +VR L + + ++ T+ + SL +L KT G RL+ + QPL D
Sbjct: 300 MKLDIAAVRALNLFQ---GSVEDTTGSQ-SLAALLNKCKTPQGQRLVNQWIKQPLMDKNR 355
Query: 61 INTRLDCLDELMSNEQLFFGLSQ-FLRKFP 89
I RL+ ++ + + +L L + LR+FP
Sbjct: 356 IEERLNLVEAFVEDAELRQTLQEDLLRRFP 385
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 444 (161.4 bits), Expect = 2.5e-47, Sum P(2) = 2.5e-47
Identities = 123/389 (31%), Positives = 200/389 (51%)
Query: 243 GFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYIRTEI 298
G+Y + K+ + + F V N + + +L SLN +NK+ E +
Sbjct: 520 GYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQ---DA 576
Query: 299 CLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGP--LAI 356
++ +V+ V D +V SFAH + PV Y RP E G + +
Sbjct: 577 IVKEIVNISSGYVEPMQTLNDVLAQLDAVV-SFAHVSNGAPVP-YVRPVILEKGQGRITL 634
Query: 357 DGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGC 413
RH +E + ++ FIPN++ + M I+TGPNM GKSTY++Q +IV++AQIGC
Sbjct: 635 KASRHACVE-VQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGC 693
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VP + + +VD I R+G D+ STFM EM ETA ++++ ++ SLI++DELGR
Sbjct: 694 FVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DGF +AW+ E++ + + A+ +FA+H L+ LA P V LH + L
Sbjct: 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTM 813
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
+Q+K G +G+ +AE+A P VIE A+ + +E + + Y +++
Sbjct: 814 LYQVKKGVCD-QSFGIHVAELANFPRHVIECAKQ--KALELEEFQNIG-GSQGYDEMEP- 868
Query: 593 YHAAQRLICLKYSNQDEESIRHALQNLKE 621
AA+R C Q E+ I+ L +K+
Sbjct: 869 --AAKR--CYLEREQGEKIIQEFLSKVKQ 893
Score = 87 (35.7 bits), Expect = 2.5e-47, Sum P(2) = 2.5e-47
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +VR L + + ++ T+ + SL +L KT G RL+ + QPL D
Sbjct: 300 MKLDIAAVRALNLFQ---GSVEDTTGSQ-SLAALLNKCKTPQGQRLVNQWIKQPLMDKNR 355
Query: 61 INTRLDCLDELMSNEQLFFGLSQ-FLRKFP 89
I RL+ ++ + + +L L + LR+FP
Sbjct: 356 IEERLNLVEAFVEDAELRQSLQEDLLRRFP 385
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 416 (151.5 bits), Expect = 3.8e-47, Sum P(3) = 3.8e-47
Identities = 96/262 (36%), Positives = 153/262 (58%)
Query: 343 YTRPHFTENGPLAIDGGRHPILESI---HNDFIPNNIFIS-EAANMVIVTGPNMSGKSTY 398
Y RP E + I GRHP+++ + + F+PN+ +S ++ ++I+TGPNM GKS+Y
Sbjct: 834 YCRPTLQEERKILIKNGRHPVIDVLLGEQDQFVPNSTDLSGDSERVMIITGPNMGGKSSY 893
Query: 399 LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
++QV LI ++AQIG YVPA +TI +VD IFTRMG DN+ STFM E+ +TA +++
Sbjct: 894 IKQVALITVMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRK 953
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPN-V 516
+ +SL+++DELGR TS+ DG AIA++ EH + +K+ T+F +H + EL Y V
Sbjct: 954 ATPQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYSQQV 1013
Query: 517 KILH--FYVVIRNNRLD------------FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
H F V ++ D F +Q+ G YGL +A++A +P +++
Sbjct: 1014 GNYHMGFLVNEDESKQDAGEEDQVPDSVIFLYQITRGIA-ARSYGLNVAKLADVPGEILK 1072
Query: 563 TARSITSRITKK-EVKRMEINC 583
A S + + +KR ++ C
Sbjct: 1073 KAASKSKELEGLVNMKRKKLKC 1094
Score = 142 (55.0 bits), Expect = 3.8e-47, Sum P(3) = 3.8e-47
Identities = 41/104 (39%), Positives = 57/104 (54%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNK-KRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M I+ T++RNLEI++ T K K SLF +L TKT G R L+ + QPL +
Sbjct: 523 MTINGTTLRNLEILQNQ------TDMKTKGSLFWVLDHTKTSFGRRKLKKWVTQPLLKLR 576
Query: 60 TINTRLDCLDELMSNEQLFFG-LSQFLRKFPKETDRVLCHFCFK 102
IN RLD + E++ +E FG + LRK P + +R LC K
Sbjct: 577 EINARLDAVSEVLHSESSVFGQIENHLRKLP-DIERGLCSIYHK 619
Score = 39 (18.8 bits), Expect = 3.8e-47, Sum P(3) = 3.8e-47
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 336 STKPVDRYTRPHFTEN 351
STK V R+ P EN
Sbjct: 761 STKAVSRFHSPFIVEN 776
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 428 (155.7 bits), Expect = 9.8e-47, Sum P(3) = 9.8e-47
Identities = 99/254 (38%), Positives = 152/254 (59%)
Query: 327 IVNSFAHTISTKPVDRYTRP--HFTENGPLA-IDGGRHPILESIHND--FIPNNIFI-SE 380
++ SFAHT S P+ Y RP H ++ + RHP+LE + +D FI N++ + S
Sbjct: 622 VIASFAHTSSYAPIP-YIRPKLHPMDSERRTHLISSRHPVLE-MQDDISFISNDVTLESG 679
Query: 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLES 440
+ +I+TGPNM GKSTY++QV +I ++AQIGC+VP + I +VD I R+G D+
Sbjct: 680 KGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIAIVDAILCRVGAGDSQLK 739
Query: 441 NSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIF 499
STFM E+ ETA +++N S+ SLI++DELGR TS+ DGF +AW+ EH+ S + + +F
Sbjct: 740 GVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIASKIGCFALF 799
Query: 500 ASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP---RHVP-----HYGLLLA 551
A+H L+EL+ PNVK +H I N + K +D + P +G+ +A
Sbjct: 800 ATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISDQSFGIHVA 859
Query: 552 EVAGLPSTVIETAR 565
EV P +++ A+
Sbjct: 860 EVVQFPEKIVKMAK 873
Score = 105 (42.0 bits), Expect = 9.8e-47, Sum P(3) = 9.8e-47
Identities = 29/68 (42%), Positives = 37/68 (54%)
Query: 23 GTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGL- 81
G S K SLF +L KT G RLL L QPL +I+ IN R D +D L+ +L L
Sbjct: 330 GNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQIELRQMLT 389
Query: 82 SQFLRKFP 89
S++L P
Sbjct: 390 SEYLPMIP 397
Score = 44 (20.5 bits), Expect = 9.8e-47, Sum P(3) = 9.8e-47
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 587 KQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFI 624
K ++M A L LK +N+D + + +LQ + E I
Sbjct: 867 KIVKMAKRKANELDDLKTNNEDLKKAKLSLQEVNEGNI 904
Score = 43 (20.2 bits), Expect = 2.8e-40, Sum P(3) = 2.8e-40
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 251 KDIQGKLPSTFIQVVKHGN-NIHCSTLELASLNVRNKSAAGECYI 294
K I+ P QV + N NI S + +ASL V+ S G C I
Sbjct: 114 KLIKSASPGNIEQVNELMNMNIDSSII-IASLKVQWNSQDGNCII 157
>UNIPROTKB|Q752H0 [details] [associations]
symbol:AFR603C "AFR603Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000735 "removal of nonhomologous ends"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0006311
"meiotic gene conversion" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
EMBL:AE016819 GenomeReviews:AE016819_GR SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 OrthoDB:EOG4S7NZ5
GO:GO:0000735 RefSeq:NP_986150.1 ProteinModelPortal:Q752H0
STRING:Q752H0 EnsemblFungi:AAS53974 GeneID:4622435
KEGG:ago:AGOS_AFR603C PhylomeDB:Q752H0 Uniprot:Q752H0
Length = 956
Score = 439 (159.6 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
Identities = 127/380 (33%), Positives = 202/380 (53%)
Query: 262 IQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVS-VXXXXXXX 320
+ VK G I+ ST EL L+ + + Y R + L + I S V
Sbjct: 554 LSTVKAG--IYFSTKELKLLSDEIGTLQQD-YDRKQSALVKEIVTITLSYSPVLEKLSLV 610
Query: 321 XXXXDMIVNSFAHTISTKPVDRYTRP--HFTENGPLAID--GGRHPILESIHN-DFIPNN 375
D++ SFAH S P+ Y RP + G ++ RHP++E+ FI N+
Sbjct: 611 LANLDVLC-SFAHVSSYAPIP-YVRPVMYDMHAGQRKMELLASRHPLVEAQDEVTFISND 668
Query: 376 IFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGT 434
+ + ++++ I+TGPNM GKSTY++QV +I +LAQIGC+VP + I +VD I R+G
Sbjct: 669 VVLEADSSGFAIITGPNMGGKSTYIRQVGVICLLAQIGCFVPCDAAEITIVDAILCRVGA 728
Query: 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SL 493
D+ STFM EM ETA +++N ++ SLI++DELGR TS+ DGF +AWS EH+ ++
Sbjct: 729 GDSQLKGVSTFMAEMLETASILRNATKNSLIIIDELGRGTSTYDGFGLAWSISEHIAKNI 788
Query: 494 KAYTIFASHMENLSELATIYPNVKILHF--YVVIRNNRLD---FKFQLKDGPRHVPHYGL 548
+ +FA+H L+ LA PNV LH +V ++++ D ++++ G +G+
Sbjct: 789 GCFALFATHFHELTALADDCPNVTNLHVVAHVEEKSHKSDDITLLYKVEPGISD-QSFGI 847
Query: 549 LLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQD 608
+AEV PS +++ A+ + + ++K E CL+ + H A+ LK Q+
Sbjct: 848 HVAEVVQFPSKIVKMAKRKATELD--DIKE-ETECLKKLKCSP-EHIAKGSEVLKNLLQE 903
Query: 609 EESIRHALQNLKESFIDGRI 628
SI A +NL + D I
Sbjct: 904 WASILRA-ENLDQQLDDESI 922
Score = 84 (34.6 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
Identities = 29/85 (34%), Positives = 41/85 (48%)
Query: 1 MNIDATSVRNLEIIE--P------LHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLL 52
M +DA++V+ L I P S +G + K SL +L KT G RLL L
Sbjct: 294 MKLDASAVKALSIFPQGPSTQSGMATSGKFGGNGKITSLLQLLNKCKTNAGVRLLNEWLK 353
Query: 53 QPLKDIETINTRLDCLDELMSNEQL 77
QPL D +I R + +D L+ +L
Sbjct: 354 QPLSDKGSIEKRHNLVDYLVDQLEL 378
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 413 (150.4 bits), Expect = 5.5e-46, Sum P(3) = 5.5e-46
Identities = 95/242 (39%), Positives = 145/242 (59%)
Query: 343 YTRPHFTENGPLAIDGGRHPILESI---HNDFIPNNIFISEAANMV-IVTGPNMSGKSTY 398
Y RP E + I GRHP+++ + + ++PNN +SE + V I+TGPNM GKS+Y
Sbjct: 846 YCRPTVQEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSY 905
Query: 399 LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
++QV LI I+AQIG YVPA +TI +VD IFTRMG DN+ STFM E+ +TA +++
Sbjct: 906 IKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRK 965
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPN-V 516
+ +SL+++DELGR TS+ DG AIA++ E+ + +K+ T+F +H + EL Y + V
Sbjct: 966 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQV 1025
Query: 517 KILH--FYVVIRNNRLD------------FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
H F V ++LD F +Q+ G YGL +A++A +P +++
Sbjct: 1026 GNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIA-ARSYGLNVAKLADVPGEILK 1084
Query: 563 TA 564
A
Sbjct: 1085 KA 1086
Score = 136 (52.9 bits), Expect = 5.5e-46, Sum P(3) = 5.5e-46
Identities = 40/104 (38%), Positives = 56/104 (53%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNK-KRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M I+ T++RNLEI++ T K K SL +L TKT G R L+ + QPL +
Sbjct: 535 MTINGTTLRNLEILQNQ------TDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLR 588
Query: 60 TINTRLDCLDELMSNEQLFFG-LSQFLRKFPKETDRVLCHFCFK 102
IN RLD + E++ +E FG + LRK P + +R LC K
Sbjct: 589 EINARLDAVSEVLHSESSVFGQIENHLRKLP-DIERGLCSIYHK 631
Score = 39 (18.8 bits), Expect = 5.5e-46, Sum P(3) = 5.5e-46
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 336 STKPVDRYTRPHFTEN 351
STK V R+ P EN
Sbjct: 773 STKAVSRFHSPFIVEN 788
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 417 (151.9 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 92/261 (35%), Positives = 151/261 (57%)
Query: 343 YTRPHFTENGPLAIDGGRHPILESI---HNDFIPNNIFISEAANMVIVTGPNMSGKSTYL 399
Y RP E + I GRHP+++ + + F+PN+ +S++ ++I+TGPNM GKS+Y+
Sbjct: 801 YCRPTLQEEKKIIIKNGRHPMIDVLLGEQDQFVPNSTSLSDSERVMIITGPNMGGKSSYI 860
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+QV L+ I+AQIG YVPA +TI +VD IFTRMG DN+ STFM ++ +TA +++
Sbjct: 861 KQVTLVTIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEQLTDTAEIIRRA 920
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPN-VK 517
S +SL+++DELGR TS+ DG AIA++ E+ + +K+ T+F +H + EL YP V
Sbjct: 921 SPQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYPEQVG 980
Query: 518 ILHFYVVIRNNR--------------LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIET 563
H ++ + + F +Q+ G YGL +A++A +P V++
Sbjct: 981 NYHMGFLVNEDESKQDSGDMEQMPDSVTFLYQITRGIA-ARSYGLNVAKLADVPREVLQK 1039
Query: 564 ARSITSRITKK-EVKRMEINC 583
A + + ++R + C
Sbjct: 1040 AAHKSKELEGLVSLRRKRLEC 1060
Score = 125 (49.1 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 37/104 (35%), Positives = 56/104 (53%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNK-KRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M I+ T++RNLE+++ T K K SL +L TKT G R L+ + QPL +
Sbjct: 493 MRINGTTLRNLEMVQNQ------TDMKTKGSLLWVLDHTKTSFGRRKLKNWVTQPLLKLR 546
Query: 60 TINTRLDCLDELMSNEQ-LFFGLSQFLRKFPKETDRVLCHFCFK 102
IN RLD + +++ +E +F + LRK P + +R LC K
Sbjct: 547 EINARLDAVSDVLHSESSVFEQIENLLRKLP-DVERGLCSIYHK 589
Score = 39 (18.8 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 151 LANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFV 187
L +IY C +++ I K + ++ E L A +P V
Sbjct: 583 LCSIYHKKCSTQEFFLIVKSLCQLKSE--LQALMPAV 617
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 449 (163.1 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 94/266 (35%), Positives = 172/266 (64%)
Query: 325 DMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHND-FIPNNIFI-SEAA 382
D +V S A T++++P Y +P +TE + ++ GRHP++E + D ++PN+I + S
Sbjct: 815 DCLV-SLA-TLASQP--GYVKPEYTEETCIHVEQGRHPMVEQLLLDSYVPNDINLDSSKT 870
Query: 383 NMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNS 442
++VTGPNM GKS+Y++QV LI I+ QIG YVPA + + ++D +FTRMG DN+ +
Sbjct: 871 RALLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQAAKLGMLDAVFTRMGAFDNMLAGE 930
Query: 443 STFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFAS 501
STFM E+ ETA +++ + RSL+++DELGR TS+ DG AIA + ++++ S+++ T+F +
Sbjct: 931 STFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRSIRSLTLFIT 990
Query: 502 HMENLSELATIYPNVKILHFYVVIRNNR------LDFKFQLKDGPRHVPHYGLLLAEVAG 555
H ++LS + +P+ ++ + ++ + + F +++ +G H YGL +A +A
Sbjct: 991 HYQHLSAMVHSFPDGELRNVHMRFSESGTGADEDITFLYEIGEGVAH-RSYGLNVARLAN 1049
Query: 556 LPSTVIETARSITSRITKKEVKRMEI 581
LP+ ++E A+ ++ + +K ++R +
Sbjct: 1050 LPAPLLEMAKQKSAELEEK-IRRRRL 1074
Score = 69 (29.3 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 26 NKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMS--NEQLFFGLSQ 83
+ K SLF L T+T G R+LR + +PL D + R++ ++EL N + +
Sbjct: 534 SSKGSLFWTLDRTQTRFGQRMLRKWVGRPLLDRRQLEDRVNAVEELKDFRNVVMVERIKG 593
Query: 84 FLRKFPKETDRVLCHF----CFKPKKVT 107
L K + ++ L C +P+ +T
Sbjct: 594 LLGKIKHDLEKGLIRIYYGKCSRPELLT 621
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 449 (163.1 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 94/266 (35%), Positives = 172/266 (64%)
Query: 325 DMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHND-FIPNNIFI-SEAA 382
D +V S A T++++P Y +P +TE + ++ GRHP++E + D ++PN+I + S
Sbjct: 815 DCLV-SLA-TLASQP--GYVKPEYTEETCIHVEQGRHPMVEQLLLDSYVPNDINLDSSKT 870
Query: 383 NMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNS 442
++VTGPNM GKS+Y++QV LI I+ QIG YVPA + + ++D +FTRMG DN+ +
Sbjct: 871 RALLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQAAKLGMLDAVFTRMGAFDNMLAGE 930
Query: 443 STFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFAS 501
STFM E+ ETA +++ + RSL+++DELGR TS+ DG AIA + ++++ S+++ T+F +
Sbjct: 931 STFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRSIRSLTLFIT 990
Query: 502 HMENLSELATIYPNVKILHFYVVIRNNR------LDFKFQLKDGPRHVPHYGLLLAEVAG 555
H ++LS + +P+ ++ + ++ + + F +++ +G H YGL +A +A
Sbjct: 991 HYQHLSAMVHSFPDGELRNVHMRFSESGTGADEDITFLYEIGEGVAH-RSYGLNVARLAN 1049
Query: 556 LPSTVIETARSITSRITKKEVKRMEI 581
LP+ ++E A+ ++ + +K ++R +
Sbjct: 1050 LPAPLLEMAKQKSAELEEK-IRRRRL 1074
Score = 69 (29.3 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 26 NKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMS--NEQLFFGLSQ 83
+ K SLF L T+T G R+LR + +PL D + R++ ++EL N + +
Sbjct: 534 SSKGSLFWTLDRTQTRFGQRMLRKWVGRPLLDRRQLEDRVNAVEELKDFRNVVMVERIKG 593
Query: 84 FLRKFPKETDRVLCHF----CFKPKKVT 107
L K + ++ L C +P+ +T
Sbjct: 594 LLGKIKHDLEKGLIRIYYGKCSRPELLT 621
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 446 (162.1 bits), Expect = 1.7e-45, Sum P(2) = 1.7e-45
Identities = 100/276 (36%), Positives = 172/276 (62%)
Query: 343 YTRPHFTENGPLAIDGGRHPILESI---HNDFIPNNIFI-SEAANMVIVTGPNMSGKSTY 398
+ RP +E+ L + RHP++E+ +FIPN++++ ++ + ++TGPNM+GKST+
Sbjct: 555 WIRPKLSEDRSLDLSDSRHPVVEATLPPGQEFIPNSVYLDTQDKAIAVLTGPNMAGKSTF 614
Query: 399 LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
++Q+ L IL QIG +VPA + + +VD++FTR+G DNL + STF EMKETA ++ +
Sbjct: 615 MRQIALNQILFQIGAFVPAKSAKLPIVDKLFTRIGAGDNLTAGESTFFVEMKETANILNH 674
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHL--LSLKAYTIFASHMENLSELATIYPNV 516
+E SLI+ DE+GR TS+ DG +IAWS E+L LS++ TIFA+H L+EL+ + +
Sbjct: 675 YTEDSLILFDEVGRGTSTYDGMSIAWSILEYLSSLSVRPKTIFATHYHELTELSRL-GGI 733
Query: 517 KILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
L+ + + +R+ F ++K G + +G+ +A++AG+P +++ A + +T E
Sbjct: 734 FNLYLETLEKEDRVLFLRKVKVG-KAKKSFGIYVAKIAGVPEPIVKRAAEL---LTDLES 789
Query: 577 KRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESI 612
K+ EI +Q Q + + +++Q EESI
Sbjct: 790 KKKEIK-IQEAQPTLFTEPETK----NFNSQTEESI 820
Score = 65 (27.9 bits), Expect = 1.7e-45, Sum P(2) = 1.7e-45
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D ++RNLE++E K +L+ + T G RLL+ +L P D
Sbjct: 257 LEMDRETIRNLELVE-------NEKEKNNTLYSIFNFCNTAKGKRLLKQRILFPECDPVV 309
Query: 61 INTRLDCLDELM 72
+ +R + D L+
Sbjct: 310 LYSRWEKQDILL 321
Score = 41 (19.5 bits), Expect = 5.6e-43, Sum P(2) = 5.6e-43
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 73 SNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTS-KVLDVD 114
S + F LS++L ++ +ET R +PK ++S K L++D
Sbjct: 218 SEKDSFQVLSKYLNEYIRETYRDNKLVLREPKILSSGKFLEMD 260
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 412 (150.1 bits), Expect = 2.7e-45, Sum P(3) = 2.7e-45
Identities = 95/242 (39%), Positives = 145/242 (59%)
Query: 343 YTRPHFTENGPLAIDGGRHPILESI---HNDFIPNNIFISEAANMV-IVTGPNMSGKSTY 398
Y RP E + I GRHP+++ + + F+PN+ +S+ + V I+TGPNM GKS+Y
Sbjct: 804 YCRPTLQEEKKIIIKNGRHPMIDVLLGEQDQFVPNSTNLSQDSERVMIITGPNMGGKSSY 863
Query: 399 LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
++QV L+VI+AQIG YVPA +TI +VD IFTR G DN+ STFM E+ +TA ++Q
Sbjct: 864 IKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGAADNIYKGRSTFMEELTDTAEIIQK 923
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPN-V 516
++RSL+++DELGR TS+ DG AIA++ E+ + +K+ T+F +H + EL YP V
Sbjct: 924 ATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKRYPEQV 983
Query: 517 KILH--FYVVIRNNRLD------------FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
H F V ++ D F +Q+ G YGL +A++A +P +++
Sbjct: 984 GNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIA-ARSYGLNVAKLADVPREILQ 1042
Query: 563 TA 564
A
Sbjct: 1043 KA 1044
Score = 131 (51.2 bits), Expect = 2.7e-45, Sum P(3) = 2.7e-45
Identities = 41/117 (35%), Positives = 59/117 (50%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M I+ T++RNLEI++ T K R SL +L TKT G R L+ + QPL +
Sbjct: 493 MRINGTTLRNLEILQNQ------TDMKTRGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLR 546
Query: 60 TINTRLDCLDELMSNEQ-LFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDN 115
IN RLD + +++ +E +F + LRK P + +R LC K L V N
Sbjct: 547 DINARLDAISDVLHSESSVFEQIENLLRKLP-DVERGLCSIYHKKCSTQEFFLIVKN 602
Score = 40 (19.1 bits), Expect = 8.1e-36, Sum P(3) = 8.1e-36
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 151 LANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFV 187
L +IY C +++ I K + ++ E L A +P V
Sbjct: 583 LCSIYHKKCSTQEFFLIVKNLCQLKSE--LQALMPAV 617
Score = 38 (18.4 bits), Expect = 2.7e-45, Sum P(3) = 2.7e-45
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 336 STKPVDRYTRPHFTEN 351
STK V R+ P EN
Sbjct: 731 STKAVSRFHSPFVVEN 746
>FB|FBgn0015546 [details] [associations]
symbol:spel1 "spellchecker1" species:7227 "Drosophila
melanogaster" [GO:0006298 "mismatch repair" evidence=ISS;NAS;IMP]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0006301 "postreplication repair" evidence=IBA;NAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0042771 EMBL:AE014134 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GeneTree:ENSGT00550000074867 EMBL:U17893
RefSeq:NP_001014482.1 RefSeq:NP_001246031.1 RefSeq:NP_523565.2
UniGene:Dm.2676 ProteinModelPortal:P43248 SMR:P43248 DIP:DIP-21499N
IntAct:P43248 MINT:MINT-1547583 STRING:P43248 PaxDb:P43248
EnsemblMetazoa:FBtr0080630 EnsemblMetazoa:FBtr0309281 GeneID:34842
KEGG:dme:Dmel_CG4215 UCSC:CG4215-RA CTD:34842 FlyBase:FBgn0015546
InParanoid:P43248 OrthoDB:EOG4S1RP5 PhylomeDB:P43248
GenomeRNAi:34842 NextBio:790493 Bgee:P43248 GermOnline:CG4215
Uniprot:P43248
Length = 917
Score = 441 (160.3 bits), Expect = 2.6e-44, Sum P(2) = 2.6e-44
Identities = 97/261 (37%), Positives = 148/261 (56%)
Query: 325 DMIVNSFAHTISTKPVDRYTRPHFTENGP--LAIDGGRHPILE-SIHNDFIPNNI-FISE 380
D +V SFA + P Y RP E G L ++ RHP LE H +FI N++ F E
Sbjct: 601 DCLV-SFAIAARSAPTP-YVRPKMLEEGARELVLEDVRHPCLELQEHVNFIANSVDFKKE 658
Query: 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLES 440
NM I+TGPNM GKSTY++ V V++A IG +VP +TI +VD I R+G DN+
Sbjct: 659 ECNMFIITGPNMGGKSTYIRSVGTAVLMAHIGAFVPCSLATISMVDSILGRVGASDNIIK 718
Query: 441 NSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIF 499
STFM EM ET+ +++ +++SL+++DELGR TS+ +G IAWS EHL K +T+F
Sbjct: 719 GLSTFMVEMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLF 778
Query: 500 ASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPST 559
A+H +++LA VK H V + +Q++ G +G+ +A +A P
Sbjct: 779 ATHFHEITKLAETLSTVKNCHMAAVADADDFTLLYQVRSGVME-KSFGIQVARLANFPEH 837
Query: 560 VIETARSITSRITKKEVKRME 580
V++ A+ + + + V + +
Sbjct: 838 VVQNAQEVYNEFEDEHVDKQK 858
Score = 61 (26.5 bits), Expect = 2.6e-44, Sum P(2) = 2.6e-44
Identities = 23/92 (25%), Positives = 48/92 (52%)
Query: 1 MNIDATSVRNLEII-EP-LHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDI 58
+++D+ +V L I+ +P H ++ S + +S+ +L +T G RL+ + QPL+
Sbjct: 297 VHLDSAAVAALNIMPKPGTHPSM--PSYRWQSVLGVLDHCRTPQGHRLMGQWVKQPLRSR 354
Query: 59 ETINTRLDCLDELMSNEQLFFGLS-QFLRKFP 89
+N R + + L+ + LS +L++ P
Sbjct: 355 NILNDRHNIVQCLLESPDTMETLSLDYLKRIP 386
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 428 (155.7 bits), Expect = 7.3e-44, Sum P(2) = 7.3e-44
Identities = 96/266 (36%), Positives = 166/266 (62%)
Query: 333 HTISTKPVDR-YTRPHFTEN-GPLAID--GGRHPILESIHND-FIPNNIFI-SEAANMVI 386
H++ST ++ Y RP F ++ P+ I+ GRHP+LE+I D F+PN+ + +E I
Sbjct: 755 HSLSTLSRNKNYVRPEFVDDCEPVEINIQSGRHPVLETILQDNFVPNDTILHAEGEYCQI 814
Query: 387 VTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFM 446
+TGPNM GKS Y++QV LI I+AQ+G +VPA F+ + V+D +FTRMG D+++ STF+
Sbjct: 815 ITGPNMGGKSCYIRQVALISIMAQVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFL 874
Query: 447 TEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK-AYTIFASHMEN 505
E+ E + +++ S RSL+++DELGR TS+ DG AIA++ +HLL+ K +F +H
Sbjct: 875 EELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHYPE 934
Query: 506 LSELATIYP-NVKILHF-YVVIRNNR-------LDFKFQLKDGPRHVPHYGLLLAEVAGL 556
++E++ +P +V H Y+ ++ ++ + + ++L G +G +A++A +
Sbjct: 935 IAEISNGFPGSVGTYHVSYLTLQKDKGSYDHDDVTYLYKLVRGLCS-RSFGFKVAQLAQI 993
Query: 557 PSTVIETARSITSRITKKEVKRMEIN 582
P + I A S+ +++ + EV+ E N
Sbjct: 994 PPSCIRRAISMAAKL-EAEVRARERN 1018
Score = 93 (37.8 bits), Expect = 7.3e-44, Sum P(2) = 7.3e-44
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M + A +++ LE+++ +S ++ SLFH + T T+ G+RLLR + PL D
Sbjct: 420 MTLSANTLQQLEVVKN-NS----DGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNL 474
Query: 61 INTRLDCLDEL 71
I+ RLD + E+
Sbjct: 475 ISARLDAVSEI 485
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 432 (157.1 bits), Expect = 8.3e-44, Sum P(2) = 8.3e-44
Identities = 128/417 (30%), Positives = 210/417 (50%)
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSE-AVHNLANKYREEXXXXXXXXXX 238
L ++P + R F ++ G + LD AR + D S V ++ +Y ++
Sbjct: 445 LDEQLPLIKRDGG-F-VRQGYEPALDEAR-NLRDASRLVVASMQARYADDTGVKGLKIRH 501
Query: 239 XXRQGFYLSIP--HKD--IQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAA 289
G+++ + H D + L +TFI I +T EL + N +++
Sbjct: 502 NNVLGYFVEVTAQHGDKLMSAPLNATFIHRQTLAGQIRFTTSELGEIEAKIANAGDRALG 561
Query: 290 GECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDR-YTRPHF 348
E I +C +AL I +D+ D+ A +++ VD Y RP
Sbjct: 562 LELEIFERLCAKAL--EISDDLRAAAQGFALL---DV-----ATSLAKLAVDENYVRPEV 611
Query: 349 TENGPLAIDGGRHPILESI--HND--FIPNNIFISEA-----ANMVIVTGPNMSGKSTYL 399
+ AI+ GRHP++E N FI N +S A + ++TGPNM+GKST+L
Sbjct: 612 DSSLGFAIEAGRHPVVEQALKRNGEPFIANACDLSPAPAQKSGQLWLLTGPNMAGKSTFL 671
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+Q LI +LAQIG +VPA + I ++DR+F+R+G D+L STFM EM ETA ++
Sbjct: 672 RQNALIALLAQIGSFVPATRARIGIIDRLFSRVGAADDLARGRSTFMVEMVETAAILNQA 731
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKI 518
ER+L+++DE+GR T++ DG +IAW+ EHL S + T+FA+H L+ L+ P +
Sbjct: 732 GERALVILDEIGRGTATFDGLSIAWAAIEHLHESNRCRTLFATHYHELTALSAKLPRMFN 791
Query: 519 LHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
V + F ++ G YG+ +A++AGLP VI A+S+ +++ ++
Sbjct: 792 ATVRVKEWQGNVVFLHEVLPGSAD-RSYGIQVAKLAGLPPAVITRAKSVLAKLEAQD 847
Score = 80 (33.2 bits), Expect = 8.3e-44, Sum P(2) = 8.3e-44
Identities = 28/96 (29%), Positives = 40/96 (41%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID + NLE+ L ++ SL + T T G+RLL L PL D
Sbjct: 295 MAIDPATRANLELTRTL------AGERRGSLLDAIDCTVTSAGSRLLAQRLAAPLTDAPA 348
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
I RLD + +++ + LR P + R L
Sbjct: 349 IARRLDAVGAFVADSAAREDIRSILRGAP-DMSRAL 383
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 412 (150.1 bits), Expect = 4.5e-43, Sum P(2) = 4.5e-43
Identities = 110/363 (30%), Positives = 179/363 (49%)
Query: 221 LANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQG--KLPSTFIQVVKHGNNIHCSTLEL 278
L KY + + GFY + K+ + K ++ K G+ + S EL
Sbjct: 470 LRKKYSAKFECDNLKLDKNSQYGFYFRVTLKEEKSIRKKDVHILETTK-GSGVKFSVGEL 528
Query: 279 ASLNVRNKSAAGECYIRTEI-CLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTIST 337
+ +N + Y R E + L E + + D+ V+ ++
Sbjct: 529 SDINDEFLEFHLK-YTRAEEEVISMLCKKAEEFIPLIPAMAQLIATLDVFVSLSTFAATS 587
Query: 338 KPVDRYTRPHFTENGP--LAIDGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSG 394
+ YTRP+ G L + RHP++E + FIPN++ + + ++I+TG NM G
Sbjct: 588 SGI--YTRPNLLPLGSKRLELKQCRHPVIEGNSEKPFIPNDVVLDKC-RLIILTGANMGG 644
Query: 395 KSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAF 454
KSTYL+ L ++LAQIG +VP +TI VVD IFTR+G D STFM EM + +
Sbjct: 645 KSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASDKQSQGISTFMAEMLDCSA 704
Query: 455 VMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIY 513
++Q ++ S +V+DELGR TS+ DGF IA + + +L+ ++ +IFA+H + +LA
Sbjct: 705 ILQRATKNSFVVIDELGRGTSTFDGFGIASAIAQDILNRIQCLSIFATHFHEMGKLAE-Q 763
Query: 514 PNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
P L V I NN + +++ +G +GL +A++ G+ VI A + + K
Sbjct: 764 PGAVALQMGVQIENNEIHMLYKVFEGVAQCS-FGLQVAKMVGIDENVINKAAQLLEGLEK 822
Query: 574 KEV 576
K V
Sbjct: 823 KLV 825
Score = 106 (42.4 bits), Expect = 4.5e-43, Sum P(2) = 4.5e-43
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +V LE+ + ++ L ++N +L+++L KT+ G +LLR L +PL I+
Sbjct: 271 MLIDSCAVEALELFQLNYNYLEKSNNL--TLYNVLNKCKTLPGEKLLRDWLSRPLCQIDH 328
Query: 61 INTRLDCLDELMSNEQL 77
IN RLD ++ L N+ +
Sbjct: 329 INERLDIVEALFENQTI 345
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 412 (150.1 bits), Expect = 4.5e-43, Sum P(2) = 4.5e-43
Identities = 110/363 (30%), Positives = 179/363 (49%)
Query: 221 LANKYREEXXXXXXXXXXXXRQGFYLSIPHKDIQG--KLPSTFIQVVKHGNNIHCSTLEL 278
L KY + + GFY + K+ + K ++ K G+ + S EL
Sbjct: 470 LRKKYSAKFECDNLKLDKNSQYGFYFRVTLKEEKSIRKKDVHILETTK-GSGVKFSVGEL 528
Query: 279 ASLNVRNKSAAGECYIRTEI-CLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTIST 337
+ +N + Y R E + L E + + D+ V+ ++
Sbjct: 529 SDINDEFLEFHLK-YTRAEEEVISMLCKKAEEFIPLIPAMAQLIATLDVFVSLSTFAATS 587
Query: 338 KPVDRYTRPHFTENGP--LAIDGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSG 394
+ YTRP+ G L + RHP++E + FIPN++ + + ++I+TG NM G
Sbjct: 588 SGI--YTRPNLLPLGSKRLELKQCRHPVIEGNSEKPFIPNDVVLDKC-RLIILTGANMGG 644
Query: 395 KSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAF 454
KSTYL+ L ++LAQIG +VP +TI VVD IFTR+G D STFM EM + +
Sbjct: 645 KSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASDKQSQGISTFMAEMLDCSA 704
Query: 455 VMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIY 513
++Q ++ S +V+DELGR TS+ DGF IA + + +L+ ++ +IFA+H + +LA
Sbjct: 705 ILQRATKNSFVVIDELGRGTSTFDGFGIASAIAQDILNRIQCLSIFATHFHEMGKLAE-Q 763
Query: 514 PNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
P L V I NN + +++ +G +GL +A++ G+ VI A + + K
Sbjct: 764 PGAVALQMGVQIENNEIHMLYKVFEGVAQCS-FGLQVAKMVGIDENVINKAAQLLEGLEK 822
Query: 574 KEV 576
K V
Sbjct: 823 KLV 825
Score = 106 (42.4 bits), Expect = 4.5e-43, Sum P(2) = 4.5e-43
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +V LE+ + ++ L ++N +L+++L KT+ G +LLR L +PL I+
Sbjct: 271 MLIDSCAVEALELFQLNYNYLEKSNNL--TLYNVLNKCKTLPGEKLLRDWLSRPLCQIDH 328
Query: 61 INTRLDCLDELMSNEQL 77
IN RLD ++ L N+ +
Sbjct: 329 INERLDIVEALFENQTI 345
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 427 (155.4 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 98/269 (36%), Positives = 151/269 (56%)
Query: 259 STFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL-EALVDAIREDVSVXXXX 317
S +++ N ++ +T L +L R + Y RT+ L +V V
Sbjct: 527 SRYLECSTQKNGVYFTTKTLQALR-REFDQLSQNYNRTQSSLVNEVVGVAASYCPVLERL 585
Query: 318 XXXXXXXDMIVNSFAHTISTKPVDRYTRP--HFTENGPLAIDGGRHPILESIHND--FIP 373
D+IV SFAH P+ Y RP H G + RHP +E + +D FI
Sbjct: 586 AAVLAHLDVIV-SFAHCSVHAPIS-YVRPKIHPRGTGRTVLTEARHPCME-VQDDVTFIT 642
Query: 374 NNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRM 432
N++ ++ E ++ +I+TGPNM GKSTY++Q+ +I ++AQIGC+VP + + + D I R+
Sbjct: 643 NDVTLTREDSSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSSAELTIFDSILARV 702
Query: 433 GTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492
G D+ STFM EM ETA ++++ + SLI++DELGR TS+ DGF +AW+ EH++
Sbjct: 703 GASDSQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVK 762
Query: 493 -LKAYTIFASHMENLSELATIYPNVKILH 520
+ + +FA+H L+ LA YPNVK LH
Sbjct: 763 EIGCFALFATHFHELTALADQYPNVKNLH 791
Score = 79 (32.9 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 28/90 (31%), Positives = 45/90 (50%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DA +++ L ++ P A G N SL+ +L KT G+RLL L QPL + E
Sbjct: 290 MKLDAAALKALNLM-P--GARDGAKNM--SLYGLLNHCKTPVGSRLLSQWLKQPLMNAEE 344
Query: 61 INTRLDCLDELMSNEQLFFGLSQ-FLRKFP 89
I R ++ ++ +L + + LR P
Sbjct: 345 IEKRQQLVEAFANDTELRQSMQEEHLRSIP 374
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 401 (146.2 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 109/394 (27%), Positives = 203/394 (51%)
Query: 243 GFYLSIPHKD---IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR-TEI 298
G+ + + D ++GK +Q VK G + +T+E+ L+ A E ++ +E+
Sbjct: 489 GWCMRVTRNDSRVLRGKSQYKELQTVKSG--VFFTTIEMKRLSQEYTKAYDEYNVKQSEV 546
Query: 299 CLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPH---FTENGPLA 355
E L + + V D ++ FA +T ++ YT+P F + +
Sbjct: 547 IKEILSLTLTYE-PVLQSLSSTLAHLD-VITCFA---TTAMLNSYTQPKLFPFESSRKIN 601
Query: 356 IDGGRHPILESIHND--FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
+ RHP+LE + +D FI N++ + + + I+TGPNM GKSTY++Q+ I ++AQ+G
Sbjct: 602 LIESRHPLLE-VQDDINFISNDVKMDDK-HFAIITGPNMGGKSTYIRQIGTIALMAQVGS 659
Query: 414 YVPAHFST-IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
++PA+ + + D I +R+G D+ STFM EM ET+ ++ + SLI++DELGR
Sbjct: 660 FIPANDGAELPIFDAILSRVGAGDSQLKGLSTFMIEMLETSSILATATANSLIIIDELGR 719
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DGF +AW+ E L+ K + +FA+H LS+L+ Y V+ L+ N +
Sbjct: 720 GTSTYDGFGLAWAISEELIKRKCFAVFATHFHELSQLSEKYDGVENLNLMAEQTNEDITL 779
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE-VKRMEINCLQYKQIQM 591
+++ G + +G+ +AE +P ++ A+ ++++ +K+ C + + +
Sbjct: 780 IYKVGPGISNTS-FGISVAEKLHMPEKIVNMAKRKVEELSEEPPIKKQ---CSETEVREG 835
Query: 592 LYHAAQRLICLKYSNQDEESIRHALQNLKESFID 625
+ + R I ++ N E +I +L FI+
Sbjct: 836 M--SRLREILKEWRNNPEINIADSLAKEPNKFIN 867
Score = 108 (43.1 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 30/96 (31%), Positives = 52/96 (54%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+++++ L I+ GT S+F + K KT+GG+RLL L QPL D+
Sbjct: 275 MKLDSSTMKALNILPN------GTQKAITSIFELFKC-KTLGGSRLLSQWLKQPLIDLSL 327
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
I R + + ++ + L + +FL K P + +R+L
Sbjct: 328 IEERQELVKAMIDDTSLRVEIQEFLSKVP-DINRLL 362
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 416 (151.5 bits), Expect = 1.9e-41, Sum P(3) = 1.9e-41
Identities = 90/238 (37%), Positives = 147/238 (61%)
Query: 343 YTRPHFTE--NGPLAIDGGRHPILE-SIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTY 398
Y RP E +G L + RHP + S + F+PN++ + E+ NM+++TGPNM+GKST
Sbjct: 974 YCRPEIIEQKDGHLYFEELRHPCINASAASTFVPNDVVLGGESPNMIVLTGPNMAGKSTL 1033
Query: 399 LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
L+QVC+ VI+AQ+GC+VPA ++I + I+TR+G D++ S STFM E+ ET ++
Sbjct: 1034 LRQVCIAVIMAQLGCWVPAKRASITPMTSIYTRLGANDDIMSARSTFMVELSETKKILDE 1093
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVK 517
+SL+++DELGR TS+ DG AIA++ HL+S + F++H ++L + V+
Sbjct: 1094 CGPKSLVILDELGRGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVR 1153
Query: 518 ILHFYVVI--RNNRLDFKFQLKDG--PRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
++ + + R+ F ++L+DG P+ YG+ +A +AGLP VI+ A S +
Sbjct: 1154 LMQMAAAVDEKIRRVTFLYKLEDGICPKS---YGMNVASMAGLPEKVIDAAEEKASEL 1208
Score = 86 (35.3 bits), Expect = 1.9e-41, Sum P(3) = 1.9e-41
Identities = 28/94 (29%), Positives = 48/94 (51%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
++ +++NLEI ++ G S + +LFH+L T G RL L PL+ IN
Sbjct: 668 MNGQTLKNLEIFS---NSFDGGS--EGTLFHLLCRCVTPFGKRLFHTWLCHPLRSGTAIN 722
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
RLD ++ + N + + FL K P + +R++
Sbjct: 723 ARLDVVELIADNPVIRDTIWGFLHKLP-DLERLI 755
Score = 43 (20.2 bits), Expect = 1.9e-41, Sum P(3) = 1.9e-41
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 167 IRKRIGEVIDEDVLHARVPFVARTQQCFAIK 197
+RK+I ++++ + LH + ++R Q+ F I+
Sbjct: 911 LRKKIKKLLEAEELHLAI--MSRMQEKFYIR 939
>UNIPROTKB|F1SQH4 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 GeneTree:ENSGT00550000074867 EMBL:CU928288
RefSeq:XP_003481267.1 Ensembl:ENSSSCT00000009231 GeneID:100739713
KEGG:ssc:100739713 ArrayExpress:F1SQH4 Uniprot:F1SQH4
Length = 450
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 113/333 (33%), Positives = 177/333 (53%)
Query: 243 GFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYIRTEI 298
G+Y + K+ + + F V N + + +L SLN +NK+ E + I
Sbjct: 36 GYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEA--QNAI 93
Query: 299 CLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGP--LAI 356
E +V+ V D +V SFAH + PV Y RP E G + +
Sbjct: 94 VKE-IVNISSGYVEPMQTLNDVLAQLDAVV-SFAHVSNGAPVP-YVRPVILEKGQGRITL 150
Query: 357 DGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGC 413
RH +E + ++ FIPN++ + M I+TGPNM GKSTY++Q ++V++AQIGC
Sbjct: 151 KASRHACVE-VQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGC 209
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VP + + +VD I R+G D+ STFM EM ETA ++++ ++ SLI++DELGR
Sbjct: 210 FVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 269
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DGF +AW+ E++ + + A+ +FA+H L+ LA P V LH + L
Sbjct: 270 TSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTM 329
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+Q+K G +G+ +AE+A P VIE A+
Sbjct: 330 LYQVKKGVCD-QSFGIHVAELANFPRHVIECAK 361
>UNIPROTKB|F1SQH6 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074867 EMBL:CU928288 EMBL:FP102206
EMBL:FP476038 Ensembl:ENSSSCT00000009229 OMA:KGACDQS
ArrayExpress:F1SQH6 Uniprot:F1SQH6
Length = 584
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 113/333 (33%), Positives = 177/333 (53%)
Query: 243 GFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYIRTEI 298
G+Y + K+ + + F V N + + +L SLN +NK+ E + I
Sbjct: 170 GYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEA--QNAI 227
Query: 299 CLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGP--LAI 356
E +V+ V D +V SFAH + PV Y RP E G + +
Sbjct: 228 VKE-IVNISSGYVEPMQTLNDVLAQLDAVV-SFAHVSNGAPVP-YVRPVILEKGQGRITL 284
Query: 357 DGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGC 413
RH +E + ++ FIPN++ + M I+TGPNM GKSTY++Q ++V++AQIGC
Sbjct: 285 KASRHACVE-VQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGC 343
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VP + + +VD I R+G D+ STFM EM ETA ++++ ++ SLI++DELGR
Sbjct: 344 FVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 403
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DGF +AW+ E++ + + A+ +FA+H L+ LA P V LH + L
Sbjct: 404 TSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTM 463
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+Q+K G +G+ +AE+A P VIE A+
Sbjct: 464 LYQVKKGVCD-QSFGIHVAELANFPRHVIECAK 495
>UNIPROTKB|Q7R8N0 [details] [associations]
symbol:PY07191 "DNA mismatch repair protein msh2"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01002579 RefSeq:XP_727998.1
ProteinModelPortal:Q7R8N0 STRING:Q7R8N0 GeneID:3800207
KEGG:pyo:PY07191 EuPathDB:PlasmoDB:PY07191 Uniprot:Q7R8N0
Length = 593
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 99/260 (38%), Positives = 154/260 (59%)
Query: 325 DMIVNSFAHTISTKPVDRYTRPHFTENGPLAI-DGGRHPILESIHN--DFIPNNIFISE- 380
D++V SF+ P Y RP +NG I RHP+LE HN +FIPN+I +++
Sbjct: 276 DVLV-SFSVVCYNSPFT-YVRPALVKNGENVIMKKSRHPLLELQHNISNFIPNDIHMNKN 333
Query: 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLES 440
+ ++IVTGPNM GKSTY++Q+ +I ILAQIG +VP F I + +I R+G D
Sbjct: 334 KSRLIIVTGPNMGGKSTYIRQIAIICILAQIGMFVPCDFCEIPIFTQIMCRVGASDFQLK 393
Query: 441 NSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIF 499
STF++EM E + +++N SLI++DELGR TS+ +G I+WS +++L ++K + +F
Sbjct: 394 GISTFLSEMIEASAIIKNADNNSLIIVDELGRGTSTYEGLGISWSIGKYILDNIKCFCLF 453
Query: 500 ASHMENLSELATIYPNVKILHFYVVI--RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLP 557
A+H +S +A V H +I +N ++ F +++KDG + YG+ +AE+A LP
Sbjct: 454 ATHFHEMSNIAYQCEGVINRHIETIIDQKNKKICFLYEIKDGASN-KSYGVNVAEIAKLP 512
Query: 558 STVIETARSITSRITKKEVK 577
VI+ A + E K
Sbjct: 513 KDVIQKAYEKVEELESAENK 532
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 418 (152.2 bits), Expect = 5.5e-41, Sum P(2) = 5.5e-41
Identities = 108/355 (30%), Positives = 188/355 (52%)
Query: 256 KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXX 315
K+P +I++ + T ++ SL + S I +E + + I E +
Sbjct: 629 KIPPDWIKLSSTRSLFRFHTPKIQSLLIELSSHEENLTISSEKIYRSFLSRISEHYNELR 688
Query: 316 XXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHN-DFIPN 374
D ++ SFA IS++ YTRP F++ L I RHP++E + + F+PN
Sbjct: 689 NVTTVLGTLDCLI-SFAR-ISSQ--SGYTRPEFSDK-ELLIHESRHPMIELLSDKSFVPN 743
Query: 375 NIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMG 433
+I +S + +++TGPNM GKS++++Q+ L I+AQ GC+VPA + + + D I RMG
Sbjct: 744 HIHLSSDGVRCLLITGPNMGGKSSFVKQLALSAIMAQSGCFVPAKSALLPIFDSILIRMG 803
Query: 434 TVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS- 492
+ DNL N STFM EM ET V+ +E+S++++DELGR TS+ DG AI+++ +L
Sbjct: 804 SSDNLSVNMSTFMVEMLETKEVLSKATEKSMVIIDELGRGTSTIDGEAISYAVLHYLNQY 863
Query: 493 LKAYTIFASHMENLSELATIYPN-VKILHF-YVVIRNN-------RLDFKFQLKDGPRHV 543
+K+Y +F +H +L L + ++ H Y+ + + + F ++L G
Sbjct: 864 IKSYLLFVTHFPSLGILERRFEGQLRCFHMGYLKSKEDFETSVSQSISFLYKLVPGVAS- 922
Query: 544 PHYGLLLAEVAGLPSTVIETARSITSRITKKEVK-RMEINCLQYKQIQMLYHAAQ 597
YGL +A +AG+P +++ A I+ KK R + + ++ M+ +A +
Sbjct: 923 KSYGLNVARMAGIPFSILSRATEISENYEKKHRNARKNVFIRKVAKLLMILNAEE 977
Score = 81 (33.6 bits), Expect = 5.5e-41, Sum P(2) = 5.5e-41
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 30 SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELM--SNEQLFFGLSQFLRK 87
SLF +L T T G R+L+ L +PL D E I RLD ++EL SN Q+ + + L +
Sbjct: 426 SLFWVLDRTYTRFGQRMLQRWLQKPLVDKENIIERLDAVEELAFNSNSQVQ-AIRKMLYR 484
Query: 88 FP 89
P
Sbjct: 485 LP 486
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 414 (150.8 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 84/218 (38%), Positives = 144/218 (66%)
Query: 354 LAIDGGRHPILESIHNDFIPNNIFISEA---ANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
L I GRHP +E+ +FI N++ +++ AN+ ++TGPNM GKST+L+Q LI+++AQ
Sbjct: 662 LDIKDGRHPTVENSTTEFIGNDLQLNKGIDDANLWLITGPNMGGKSTFLRQNALIILMAQ 721
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G +VPA ++ I +VD IF+R+G+ D+L ++ STFM EM ETA +++ + RS ++MDE+
Sbjct: 722 MGSFVPASYAKIGIVDAIFSRVGSSDDLSNDKSTFMVEMVETASILKKATNRSFVIMDEV 781
Query: 471 GRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG +IA S E+L + + T+FA+H L++ P++K + +
Sbjct: 782 GRGTSTLDGISIAQSVVEYLNQVNRCRTLFATHYHELTKNLDETPHIKCYCLAIQEDEDE 841
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ F ++ G + YG+ A++AG+P++V+E ++SI
Sbjct: 842 ILFTHKIVPGMSN-KSYGIFCAKMAGIPNSVLERSKSI 878
Score = 81 (33.6 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++++LEI + +KK SL + T T G RLL + + P +++
Sbjct: 318 MFIDYSTMQSLEITKTYQG------DKKGSLLESIDKTITPQGGRLLFSRIQSPSLELKE 371
Query: 61 INTRLDCLDELMSNEQLFFGLSQFL 85
IN+RL+ L+ +N +L + FL
Sbjct: 372 INSRLNQLEFFYNNMELTNEVRSFL 396
Score = 38 (18.4 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 74 NEQLFFGLSQFLRKFPKE 91
NE LFF L F F ++
Sbjct: 13 NEILFFRLGDFYEMFDED 30
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 423 (154.0 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
Identities = 101/302 (33%), Positives = 176/302 (58%)
Query: 340 VDRYTRPHFTE---NGPLAIDGGRHPILESI----HNDFIPNNIFISEAA-NMVIVTGPN 391
++ Y RP F + +G + I+ GRHP++E+I ++PN I + E+A +I+TGPN
Sbjct: 1122 LEGYIRPQFVKEKKDGGIQIENGRHPVVEAILSGSDGSYVPNTIELRESACKSMIITGPN 1181
Query: 392 MSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKE 451
M GKS+ L+Q LIVI+AQ+GC+VPA ++ V D I+TRMG D++ + STF E++E
Sbjct: 1182 MGGKSSLLRQTALIVIMAQVGCFVPATSCSLSVFDAIYTRMGARDSIGTGKSTFFIELEE 1241
Query: 452 TAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELA 510
T+ +++N ++ +L+++DELGR TS++DG AIA+S ++++ +K Y +F +H L++L
Sbjct: 1242 TSDILKNSTQNTLVILDELGRGTSTNDGVAIAYSTLKYIVEVMKCYCLFVTHYPLLAQLE 1301
Query: 511 TIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHV-----------PHYGLLLAEVAGLPST 559
YP ++ +F++ + D + Q P+ + YGL +A +AGLP
Sbjct: 1302 LQYPT-QVGNFHMGYLEEKQDQQLQKSVIPKVIFLYKLVKGAAQNSYGLNIARLAGLPME 1360
Query: 560 VIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNL 619
VI A ++ + K+ + R N K Q + + + +I SN+ + LQ +
Sbjct: 1361 VIADALKKSNEM-KESITR-RANLSDGKDQQQIENEIKSIIKNWNSNRTTLNSNDLLQFI 1418
Query: 620 KE 621
++
Sbjct: 1419 EK 1420
Score = 75 (31.5 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 24 TSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMS 73
+ NK++ SL ++ T T G+R+ + +PL +E I R D ++EL++
Sbjct: 802 SDNKEKGSLIWLMNRTSTFSGSRMFINWICKPLNQLELIKERQDAVEELVN 852
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 384 (140.2 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 96/260 (36%), Positives = 142/260 (54%)
Query: 339 PVDRYTRPHFTENGP-LAIDGGRHPILESIHNDF-IPNNIFISEAANM--------VIVT 388
P T + GP L I G HP + +PN+I + EA +++T
Sbjct: 793 PESEATDQNQKTKGPILKIQGLWHPFAVAADGQLPVPNDILLGEARRSSGSIHPRSLLLT 852
Query: 389 GPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTE 448
GPNM GKST L+ CL VI AQ+GCYVP I +VD IFTR+G D + + STF+ E
Sbjct: 853 GPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEISLVDTIFTRLGASDRIMTGESTFLVE 912
Query: 449 MKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLS 507
ETA V+QN ++ SL+++DELGR TS+ DG+AIA+S HL+ ++ +FA+H L+
Sbjct: 913 CTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYHPLT 972
Query: 508 ELATIYPNVKILHFYVVIRNNR----------LDFKFQLKDGPRHVPH-YGLLLAEVAGL 556
+ +P V H ++ L F ++L +G P YGL +A +AG+
Sbjct: 973 KEFASHPRVTSKHMACAFKSRSDYQPRGCDQDLVFLYRLTEGA--CPESYGLQVALMAGI 1030
Query: 557 PSTVIETARSITSRITKKEV 576
P+ V+ETA S ++ K+ +
Sbjct: 1031 PNQVVETA-SGAAQAMKRSI 1049
Score = 121 (47.7 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID ++ NLEI +S G S +L+ L + G RLLR + PLKD+E+
Sbjct: 553 LRIDGQTMVNLEIFN--NSCDGGPSG---TLYKYLDNCVSPTGKRLLRNWICHPLKDVES 607
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
IN RLD ++E +N + Q+L K P + +R+L
Sbjct: 608 INKRLDVVEEFTANSESMQITGQYLHKLP-DLERLL 642
>UNIPROTKB|Q5BDA1 [details] [associations]
symbol:AN1479.2 "DNA-binding protein of the mitochondria
(Eurofung)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IBA] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0007131 "reciprocal meiotic
recombination" evidence=IRD] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IRD] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BN001307 GO:GO:0006298 GO:GO:0008094
EMBL:AACD01000022 GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 RefSeq:XP_659083.1 STRING:Q5BDA1
EnsemblFungi:CADANIAT00008100 GeneID:2875263 KEGG:ani:AN1479.2
OMA:RVGGFYE Uniprot:Q5BDA1
Length = 924
Score = 437 (158.9 bits), Expect = 3.6e-40, P = 3.6e-40
Identities = 98/256 (38%), Positives = 152/256 (59%)
Query: 330 SFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPI----LESIHNDFIPNNIFISEAANMV 385
SFA T++ + + RP TE I GGRHP LE F+ N+ F+ E+ +
Sbjct: 665 SFA-TLAAE--QQLVRPILTEGTNYKIIGGRHPTVKLGLEEQGRRFVSNDCFLGESERIW 721
Query: 386 IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTF 445
++TGPNM+GKST+L+Q LI ILAQ+G +VPA ++ I +VD+IF+R+G D+L + STF
Sbjct: 722 LITGPNMAGKSTFLRQNALITILAQVGSFVPADYAEIGIVDQIFSRIGAADDLFRDQSTF 781
Query: 446 MTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHME 504
M EM ETA +++ + RS ++MDE+GR T+ DG A++++C HL + T+FA+H
Sbjct: 782 MVEMLETAAILKQATARSFVIMDEVGRGTTPEDGTAVSFACLHHLHYRNQCRTLFATHFH 841
Query: 505 NLSELATIYPNV-KILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIET 563
L+++ +P + + R F +L+ G H L +A++AGLPS +E
Sbjct: 842 GLADMTQEFPALGRYCTDVKETTEGRFSFVHKLRKGINRESH-ALKVAQLAGLPSETLEL 900
Query: 564 ARSITSRITKKEVKRM 579
ARS+ I + E R+
Sbjct: 901 ARSVRDSI-RGEASRL 915
>UNIPROTKB|B1N4L6 [details] [associations]
symbol:EHI_123830 "DNA mismatch repair protein Msh2,
putative" species:5759 "Entamoeba histolytica" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS571433 RefSeq:XP_001914132.1
ProteinModelPortal:B1N4L6 STRING:B1N4L6 GeneID:6220147
KEGG:ehi:EHI_123830 EuPathDB:AmoebaDB:EHI_123830 InParanoid:B1N4L6
ProtClustDB:CLSZ2734733 Uniprot:B1N4L6
Length = 630
Score = 402 (146.6 bits), Expect = 6.1e-40, Sum P(2) = 6.1e-40
Identities = 105/321 (32%), Positives = 171/321 (53%)
Query: 251 KDIQGKLPSTFIQVVKHGNNIHCSTLELASLNV-RNKSAAGECYIRTEICLEALVDAIRE 309
K+++ T IQ +K + E+ +LNV R+K E I + E ++ + E
Sbjct: 229 KEVKKNKKYTIIQTLK--GECKFTFKEMQTLNVKRDKLKLKEEEINKKFIEE--INKVVE 284
Query: 310 DVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRP--HFTENGPLAIDGGRHPILESI 367
+ SFA T+S Y++P + +E G + I RHP++E+
Sbjct: 285 GYKEKFQELENMIGYIDCIQSFA-TVSIDNNQGYSKPTIYESEKGIIKIIKARHPLIENN 343
Query: 368 H-NDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVV 425
N FI N+I I + I+TGPNM GKSTYL+ + L VI+AQIG ++P + I +
Sbjct: 344 SINSFIENDIDIDRKETRFQIITGPNMGGKSTYLRMIGLCVIMAQIGMFIPCSEAHISIC 403
Query: 426 DRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWS 485
D+I R+G DN+ STFM+EMK+T+ +++ ++ SL+++DELGR TS+ DGF IAW+
Sbjct: 404 DKIMCRIGAGDNIVEGMSTFMSEMKDTSEIIKKSTKNSLVLIDELGRGTSTYDGFGIAWA 463
Query: 486 CCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVP 544
E+L + + Y +FA+H ++ L V H I + +L K+++ +G
Sbjct: 464 ISEYLAIDIGCYCVFATHFHEITGLEKRVTGVINKHVEADIIDKQLVLKYKINNGSTD-Q 522
Query: 545 HYGLLLAEVAGLPSTVIETAR 565
+ +AE A P V+E+A+
Sbjct: 523 SLAIYVAEWADFPHEVVESAK 543
Score = 79 (32.9 bits), Expect = 6.1e-40, Sum P(2) = 6.1e-40
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 12 EIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDEL 71
+ IE LH L+G K+ +LF L T T G ++++ + QPL D + IN RL+ ++
Sbjct: 15 DAIEGLH--LFG-DKKEMTLFKHLNRTHTKIGEKMIKEWIKQPLIDKDKINKRLELVEGF 71
Query: 72 MSN 74
N
Sbjct: 72 YDN 74
>UNIPROTKB|Q7RQK0 [details] [associations]
symbol:PY01096 "MutS homolog 2-related" species:73239
"Plasmodium yoelii yoelii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01000289 RefSeq:XP_728672.1
ProteinModelPortal:Q7RQK0 STRING:Q7RQK0 GeneID:3801212
KEGG:pyo:PY01096 EuPathDB:PlasmoDB:PY01096 Uniprot:Q7RQK0
Length = 853
Score = 406 (148.0 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 92/264 (34%), Positives = 153/264 (57%)
Query: 330 SFAHTISTKPVDRYTRPHFTENGP-LAIDGGRHPILESIH---NDFIPNNIFISEAANMV 385
SFA+ IS + + Y RP +NG L I RHP++E+ + +FIPN+I + + N +
Sbjct: 532 SFAYVIS-QCISTYVRPIVEQNGKVLEIKNSRHPLVEANYLQIKNFIPNDIHMDKENNRL 590
Query: 386 -IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSST 444
I+TGPNM GKSTY++Q+ +I ++A IGC+VP+ ++ I + +I R+G+ D ST
Sbjct: 591 NIITGPNMGGKSTYIRQIAIISLMAHIGCFVPSTYAKIPIFSQIMCRIGSSDIQLKGIST 650
Query: 445 FMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHM 503
F +EM E + +++N +L+++DELGR TS+ +GF I+WS +LL+ +K +FA+H
Sbjct: 651 FFSEMIEVSAIIKNADSDTLVIIDELGRGTSTYEGFGISWSVANYLLNNIKCLCLFATHF 710
Query: 504 ENLSELATIYPNVKILHFYVVI--RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVI 561
+S L + V H I ++ F +++K G YG+ +A++A LP VI
Sbjct: 711 HEISNLEDEHAAVSNNHVSAKIDEAKKKISFLYEIKKGFAD-KSYGVHVAQIAKLPQKVI 769
Query: 562 ETARSITSRITKKEVKRMEINCLQ 585
+ + + + E K N L+
Sbjct: 770 DKSFEKSKELESIENKHYFKNKLK 793
Score = 78 (32.5 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 30 SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQ--FLRK 87
+L+ L KT G R L ++ P++D + IN RLD + E+M+++Q + Q +LRK
Sbjct: 199 TLYKFLNKCKTKIGERKLLKWIMHPIRDEKKINQRLDMV-EIMNDDQALRSMIQGEYLRK 257
Score = 38 (18.4 bits), Expect = 4.4e-35, Sum P(2) = 4.4e-35
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 56 KDIETINTRLDCLDELMSNE-QLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDV 113
KDI I R +++ N+ ++ F ++ LR K+ VL + + + +K ++V
Sbjct: 452 KDIIFIQQRKKTYNQVRVNKNEILFNTNK-LRDLCKQYQYVLHSYNTSQEHLANKAIEV 509
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 411 (149.7 bits), Expect = 5.4e-39, Sum P(3) = 5.4e-39
Identities = 93/243 (38%), Positives = 153/243 (62%)
Query: 345 RPHFT---ENGPLAIDGGRHPILESIH-NDFIPNNIFISEAAN---MVIVTGPNMSGKST 397
RP F + G + + RHP + S +DFIPN+I ++ N ++++TGPNM GKST
Sbjct: 976 RPLFVSSDQRGFIDVKDMRHPCIYSKSGDDFIPNDISLNTENNPPSLMVLTGPNMGGKST 1035
Query: 398 YLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQ 457
L+Q C++VI+AQ+GCYV A + +VDRIFTR+G DN+ + STFM E+ ET+ V++
Sbjct: 1036 LLRQSCILVIMAQMGCYVSASSCEMSIVDRIFTRLGANDNILAGQSTFMVELAETSAVLK 1095
Query: 458 NVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516
++RSL+++DELGR TS+ DG++IA+S +L + +++ IFA+H ++L+ T+ +
Sbjct: 1096 YATKRSLVILDELGRGTSTFDGYSIAYSVLNYLATKVQSMCIFATHYQSLAYEPTVRDLI 1155
Query: 517 KILHF--YVVIRNNRLDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITK 573
+ +V ++ F ++L G P+ YGL +A +AGLP +I A ++++ K
Sbjct: 1156 STAYMTCHVDEEAKKVIFLYKLASGV--CPNSYGLHVASMAGLPREIITKAEEKSTQMEK 1213
Query: 574 KEV 576
V
Sbjct: 1214 DSV 1216
Score = 66 (28.3 bits), Expect = 5.4e-39, Sum P(3) = 5.4e-39
Identities = 26/113 (23%), Positives = 54/113 (47%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + NLEI +++ G++ + +LF ++ T G R+ R + +PL +
Sbjct: 644 MILDGQCLVNLEIF---NNSTDGST--EGTLFKLMDRCTTAFGKRMFRQWICRPLANKNA 698
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDV 113
I R ++ L + + ++ L K P + +R++ + TSK+ D+
Sbjct: 699 IVDRQKAIEFLRDSPETLQKVTAILNKLP-DLERMIARI----RAQTSKISDL 746
Score = 47 (21.6 bits), Expect = 5.4e-39, Sum P(3) = 5.4e-39
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 259 STFIQVVKHGNNIHCSTLEL 278
S I V+ H +NIH LEL
Sbjct: 744 SDLISVLNHFDNIHSKLLEL 763
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 411 (149.7 bits), Expect = 7.4e-39, Sum P(2) = 7.4e-39
Identities = 103/282 (36%), Positives = 161/282 (57%)
Query: 354 LAIDGGRHPILESIHNDFIPNNIFISEAA---------NMVIVTGPNMSGKSTYLQQVCL 404
+ + GRHP L S+ +FIPN+I++ + N++++TGPNM GKST L+ C+
Sbjct: 959 IELTSGRHPCLASMGVNFIPNDIYLGDIKQTGQFEDNKNLILLTGPNMGGKSTTLRMACV 1018
Query: 405 IVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSL 464
+ ILAQIGCYVPA + +VDRIFTR+G D L STF EM+ET+ ++ S+ SL
Sbjct: 1019 MAILAQIGCYVPAKSLRMTLVDRIFTRIGASDKLMDGKSTFFIEMEETSNAVKQGSKHSL 1078
Query: 465 IVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHF-- 521
I+MDELGR TS+ DG AIA+S +L+ +L++ +FA+H L + YP + H
Sbjct: 1079 IIMDELGRGTSTFDGVAIAYSIVRYLVENLQSRCLFATHYHVLLDEFRHYPQIAYYHMAC 1138
Query: 522 YVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
+V + +++ F ++LK G +G+ +A+V G+ +IE I K++ K E
Sbjct: 1139 HVDEKRSKVIFLYRLKAGECS-SSFGINVAKVVGISDNLIE--------IAKQKAKEFEE 1189
Query: 582 NCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESF 623
N IQ Y+ +R L + Q+ + + L+ + E F
Sbjct: 1190 NL----NIQHAYNTNKRFGILMKAIQEYDRDEN-LEQIIEQF 1226
Score = 74 (31.1 bits), Expect = 7.4e-39, Sum P(2) = 7.4e-39
Identities = 32/110 (29%), Positives = 50/110 (45%)
Query: 1 MNIDATSVRNLEIIEPLHSAL-WGTSNKKR-----SLFHMLKTTKTIGGTRLLRANLLQP 54
M +D+ S+++LEI++ + N K SL + TKT G R+L+ + P
Sbjct: 550 MILDSQSLQHLEILDSSSGPVSTQKENYKLHFDDGSLLGYINKTKTPFGYRMLKNWICAP 609
Query: 55 LKDIETINTRLDCLDELMS-NEQLFFGLSQFLRKFPKETD-RVLCHFCFK 102
L DI I R D +++L N + FLR K D +C +K
Sbjct: 610 LMDINKIYDRYDAIEDLQKFNSER----DTFLRGIEKLPDLEKMCGRIYK 655
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 391 (142.7 bits), Expect = 7.5e-39, Sum P(2) = 7.5e-39
Identities = 99/295 (33%), Positives = 160/295 (54%)
Query: 300 LEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENG--P-LAI 356
L LVD + S D ++ SFA ++ RP+ G P L +
Sbjct: 876 LAMLVDLLVGKASEWSLVINALSTID-VLRSFA-AMALSSFGTTCRPNILLKGKAPVLQM 933
Query: 357 DGGRHP--ILESIHNDFIPNNIFISEAAN-----MVIVTGPNMSGKSTYLQQVCLIVILA 409
G HP ES+ N +PN++ + + + +++TGPNM GKST ++ CL ++LA
Sbjct: 934 KGLWHPYAFAESV-NGLVPNDLSLGQNLSGQNRFALLLTGPNMGGKSTIMRATCLAIVLA 992
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+GCYVP + + D IFTR+G +D + S STF+ E ETA +++N +E SL+++DE
Sbjct: 993 QLGCYVPCQSCELTLADAIFTRIGAMDRIMSGESTFLVECTETASILENATEDSLVLLDE 1052
Query: 470 LGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVI--R 526
LGR TS+ DG+AIA++ HL+ +++ +FA+H L++ +P+V + H ++ R
Sbjct: 1053 LGRGTSTFDGYAIAYAVFRHLVEAVRCRLLFATHYHPLTKEFASHPHVTLQHMACMLKPR 1112
Query: 527 NN------RLDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKK 574
N L F ++L G P YGL +A +AGLP +++E A + + K
Sbjct: 1113 NGGDGGEKELTFLYRLTSGA--CPESYGLQVATMAGLPRSIVERASAAGEMMRSK 1165
Score = 99 (39.9 bits), Expect = 7.5e-39, Sum P(2) = 7.5e-39
Identities = 33/96 (34%), Positives = 49/96 (51%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D ++ NLEI G+S +L+ L T G RLLR + PLKDI+
Sbjct: 687 LRMDGQTLVNLEIFSNNFDG--GSSG---TLYKHLNHCITPCGKRLLRRWICHPLKDIDA 741
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
IN RLD ++ + N L + LRK P + +R+L
Sbjct: 742 INERLDIVEGFIQNCGLGSVTLEHLRKVP-DLERLL 776
>POMBASE|SPBC19G7.01c [details] [associations]
symbol:msh2 "MutS protein homolog 2" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IGI;IMP] [GO:0007534 "gene
conversion at mating-type locus" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP] [GO:0000404
"loop DNA binding" evidence=ISO] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0032138 "single base insertion
or deletion binding" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPBC19G7.01c
GO:GO:0005829 GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0006298 GO:GO:0030983 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032301 HOGENOM:HOG000196498 KO:K08735
GO:GO:0032302 GO:GO:0000406 OrthoDB:EOG4S7NZ5 EMBL:AJ006948
PIR:T43699 RefSeq:XP_001713136.1 ProteinModelPortal:O74773
STRING:O74773 EnsemblFungi:SPBC19G7.01c.1 GeneID:2540695
KEGG:spo:SPBC19G7.01c OMA:HINERLD NextBio:20801818 GO:GO:0007534
Uniprot:O74773
Length = 982
Score = 383 (139.9 bits), Expect = 7.5e-39, Sum P(2) = 7.5e-39
Identities = 79/228 (34%), Positives = 140/228 (61%)
Query: 354 LAIDGGRHPILESIHN-DFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQI 411
L + RHP LE+ + FIPN++ + ++ ++I+TGPNM GKSTY++QV +I ++AQI
Sbjct: 684 LYLKQARHPCLEAQDDVKFIPNDVNLEHGSSELLIITGPNMGGKSTYIRQVGVITVMAQI 743
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
GC VP + + ++D I R+G D+ STFM EM ETA +++ + RSLI++DELG
Sbjct: 744 GCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAEMLETATILRAATPRSLIIIDELG 803
Query: 472 RATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR- 529
R TS++DGF +AW+ EH+++ + + +FA+H +++L+ VK LH + ++
Sbjct: 804 RGTSTTDGFGLAWAITEHIVTQIGCFCLFATHYHEMTKLSEEITTVKNLHVTAYVGDSES 863
Query: 530 --LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ + + +G +G+ +A++A P +IE A + + + ++
Sbjct: 864 KDVALLYNVCEGASD-RSFGIHVAKLAHFPPKIIEMASNKAAELEAED 910
Score = 105 (42.0 bits), Expect = 7.5e-39, Sum P(2) = 7.5e-39
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +VR+L ++ P + G ++K SL+ +L +T G R LR ++QPL D ++
Sbjct: 314 MRLDIAAVRSLNLLPPPN----GNAHKTMSLYGLLNHCRTAMGARNLRRWIVQPLLDAKS 369
Query: 61 INTRLDCLDELMSN---EQLFFGLSQFLRKFP 89
I R D + L+ + QL LR P
Sbjct: 370 IERRHDLVSALVEDAEARQLLLDDDHLLRSIP 401
Score = 39 (18.8 bits), Expect = 6.3e-32, Sum P(2) = 6.3e-32
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 167 IRKRIGEVIDEDVLHARVP 185
+ + +V+D V HA VP
Sbjct: 247 VELELSKVLDSPVTHALVP 265
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 401 (146.2 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 114/386 (29%), Positives = 186/386 (48%)
Query: 155 YRSVCENEKYASIRKRIGEVID-EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCD 213
Y++ E E A +R + E+++ V A F IK D L I R+
Sbjct: 424 YQTPLETEYTAKLRNHSASLAKLEEMVETTVDLDALENHEFIIKPEFDDSLRIIRKKLDQ 483
Query: 214 TSEAV---HNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKD---IQGKLPSTFIQVVKH 267
+ H + ++ G+ + + I+ K + +
Sbjct: 484 LRHDMYLEHKAVARDLDQEMDKKLFLENHRVYGWCFRLTRNEAGCIRNK--KAYQECSTQ 541
Query: 268 GNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA-LVDAIREDVSVXXXXXXXXXXXDM 326
N ++ +T + SL R Y RT+ L + +V+ V D+
Sbjct: 542 KNGVYFTTSTMQSLR-REHDQLSSNYNRTQTGLVSEVVNVAASYCPVLEQLAGVLAHLDV 600
Query: 327 IVNSFAHTISTKPVDRYTRP--HFTENGPLAIDGGRHPILESIHND--FIPNNI-FISEA 381
IV SFAH P YT+P H G + RHP +E + +D FI N++ I +
Sbjct: 601 IV-SFAHASVHAPT-AYTKPKIHPRGTGNTVLKEARHPCME-MQDDISFITNDVSLIRDE 657
Query: 382 ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESN 441
++ +I+TGPNM GKSTY++ + +I ++AQIGC+VP + + + D I R+G D+
Sbjct: 658 SSFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKG 717
Query: 442 SSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFA 500
STFM EM ET+ ++++ + SLI++DELGR TS+ DGF +AW+ EH+++ ++ + +FA
Sbjct: 718 VSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFA 777
Query: 501 SHMENLSELATIYP-NVKILHFYVVI 525
+H L+ LA YP +VK LH I
Sbjct: 778 THFHELTTLADRYPKSVKNLHVVAFI 803
Score = 79 (32.9 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DA ++R L ++ +K SLF +L KT G+RLL L QPL D+
Sbjct: 296 MKLDAAALRALNLMPGPRDG-----SKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAE 350
Query: 61 INTRLDCLDE-LMSNEQLFFGLSQFLRKFP 89
I R ++ ++S E + LR P
Sbjct: 351 IEKRQRLVEAFVVSTELRQMMQEEHLRSIP 380
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 372 (136.0 bits), Expect = 2.3e-38, Sum P(2) = 2.3e-38
Identities = 84/221 (38%), Positives = 133/221 (60%)
Query: 350 ENGP-LAIDGGRHPILESIHNDFIPNNIFIS---EAANMVIVTGPNMSGKSTYLQQVCLI 405
E P L ++ HP++ ++ +FIPNNI++ E +++TGPNM GKST L+Q +
Sbjct: 971 EKKPFLILENNIHPVVATLMPNFIPNNIYMGCDKEKETTLLLTGPNMGGKSTLLRQTAIS 1030
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
VILAQIG +VP+ + + +VD+IFTR+G+ DNL STF+ E+++ + +++ ++ SL
Sbjct: 1031 VILAQIGAFVPSTYCELTIVDKIFTRLGSSDNLFEGKSTFLVELEDISNLLKQSTKYSLA 1090
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
++DELGR TSS DG AIA S E + +K IF++H L E N+ H +
Sbjct: 1091 ILDELGRGTSSFDGTAIALSTLEQISDVIKCRCIFSTHYHLLVEEVKHNTNISNYHMSLS 1150
Query: 525 IRNNRLDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETA 564
I +++ F K P +G+ +A++AGLP +IE A
Sbjct: 1151 IDDDQEKIIFLYKFIKGICPKSFGIHIAKLAGLPKEIIELA 1191
Score = 117 (46.2 bits), Expect = 2.3e-38, Sum P(2) = 2.3e-38
Identities = 45/187 (24%), Positives = 82/187 (43%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DAT++++LEI+E + K SL+ + T T G R +R + PL + +
Sbjct: 593 MVLDATALKHLEILETQ------SGETKNSLYDYVNKTCTNFGARNMRRWVCSPLLNCDK 646
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNA---- 116
IN RLD ++ L N+ + + L+K P + +R+L C + + + DN
Sbjct: 647 INQRLDVVEFLRKNDHILSLIRLKLKKLP-DIERLLNKICIQASQSERGAVFFDNIVNTK 705
Query: 117 -KKSQTLISSI--IXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCENE---KYASIRKR 170
K+ T +++ I + L + F + N Y + +N Y I K
Sbjct: 706 LKEFVTFLNAFKEIDNMLIEINSIDSEEDLIPTRLFEITNTYNKISKNNIKGNYPEIDKI 765
Query: 171 IGEVIDE 177
E +++
Sbjct: 766 TNEFLEK 772
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 385 (140.6 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 90/251 (35%), Positives = 143/251 (56%)
Query: 345 RPHFTENGPLAIDGG--RHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQ 401
RP F + ++ RHP + + +DFIPN+I + + AN+ ++TG N +GKST L+
Sbjct: 950 RPVFVNDERTVVEFNELRHPCMLNTVDDFIPNDIKLGGDEANINLLTGANAAGKSTILRM 1009
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
C+ VI+AQIGCYVPA + + VDRI +R+G DN+ + STF E+ ET ++ +
Sbjct: 1010 SCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1069
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILH 520
RSL+++DELGR TSS DG A+A + H+ S + FA+H +L+ +P ++
Sbjct: 1070 RSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRARR 1129
Query: 521 FYVVI--RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVI---ETARSI---TSRIT 572
+ + N R+ F ++L+DG +G+ A + G+P VI E A TSR+
Sbjct: 1130 MQIAVDEENKRITFLYKLEDGVAE-GSFGMHCAAMCGIPDKVIRRSEVAAKEWEHTSRL- 1187
Query: 573 KKEVKRMEINC 583
K+ + R + C
Sbjct: 1188 KESLDRAKTGC 1198
Score = 98 (39.6 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S+ NLEI ++A G +LFH+L T G RL R + PL +I+ +N
Sbjct: 645 LDGQSLINLEIFA--NTANGGPEG---TLFHLLNRCITPFGKRLFRQWVCHPLCNIQKLN 699
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
RLD +D L + L S + K P + +R++
Sbjct: 700 ERLDAVDMLNDDHSLREQFSSQMSKMP-DLERLI 732
>UNIPROTKB|Q75D87 [details] [associations]
symbol:AGOS_ABR137W "ABR137Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] [GO:0043504
"mitochondrial DNA repair" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005739 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE016815 GenomeReviews:AE016815_GR GO:GO:0008094
GO:GO:0043504 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000157750
OrthoDB:EOG42591V SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0032139
RefSeq:NP_983084.2 STRING:Q75D87 EnsemblFungi:AAS50908
GeneID:4619194 KEGG:ago:AGOS_ABR137W Uniprot:Q75D87
Length = 955
Score = 400 (145.9 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 97/258 (37%), Positives = 153/258 (59%)
Query: 327 IVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAA---- 382
+++SFA S K + P E+ L I GGRH ++E P N ++ +
Sbjct: 702 VLSSFAILASEKNL---VCPQVDESSALEIVGGRHLVVEDGLQSRAPGNFTANDCSLQNG 758
Query: 383 NMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNS 442
++ IVTGPNM GKST+L+Q +IVILAQIGCYVP + I +VD+IF+R+G+ D+L ++
Sbjct: 759 DIWIVTGPNMGGKSTFLRQTAIIVILAQIGCYVPCASAHIGLVDKIFSRVGSADDLYNDM 818
Query: 443 STFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFAS 501
STFM EM ET+F+++ ++RSL ++DE+GR T++ DG IA++ H+L+ + +FAS
Sbjct: 819 STFMVEMLETSFMLKGATKRSLAILDEIGRGTNAEDGVGIAYTTLHHMLTKNRCRALFAS 878
Query: 502 HM-ENLSELATIY--PNV-KILHFYVV-IR--NNRLDFKFQLKDGPRHVPHYGLLLAEVA 554
H LSEL + P K +HFY +R N R + ++ G + + +A++A
Sbjct: 879 HFGRELSELVEQHLPPGARKRVHFYRTNVREHNGRSFYDHKITPGIC-LSSDAIRVAQMA 937
Query: 555 GLPSTVIETARSITSRIT 572
G P ++ AR + + T
Sbjct: 938 GFPQEALDVARRVLAAST 955
Score = 73 (30.8 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 33/103 (32%), Positives = 45/103 (43%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M ID+ + LE LH+ N KR SL ++ T T GTRLL L P ++
Sbjct: 357 MQIDSRTSAALE----LHNTF--RDNLKRGSLLSAIRRTVTPSGTRLLTQWLSAPSMHLD 410
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK 102
I R + + M N + L L K + R+L F FK
Sbjct: 411 EIKQRQNLVRLFMQNPFVTDNLIAQL-KATADMTRILQKFSFK 452
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 383 (139.9 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 84/260 (32%), Positives = 151/260 (58%)
Query: 336 STKPVDRYTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS---EAANMVIVTGPN 391
+T + YTRP ++ + + RHP +E + +++ N+I I+ + ++I+TGPN
Sbjct: 743 TTSSLPNYTRPTLIDDDLTILVKQARHPTIEQLRPNYVANDININIEYDKNRVLIITGPN 802
Query: 392 MSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKE 451
M GKS+Y++ V L+ ++ QIGCY+P +T+ + D IF RMG DN+ STFM EM +
Sbjct: 803 MGGKSSYVKTVALLTVMTQIGCYLPCQNATMGIFDSIFIRMGANDNILKGYSTFMMEMLQ 862
Query: 452 TAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS--LKAYTIFASHMENLSEL 509
++ +S RSLI++DE+GR T + DG ++A+S ++L+ K +F +H ++ L
Sbjct: 863 CKNIISMMSNRSLIILDEIGRGTGTIDGISLAYSILKYLIESEFKPLVLFITHYPSIHVL 922
Query: 510 ATIYPNVKILHF---YVVIRNN------RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTV 560
YPN ++++ Y I+NN + F + L G + YGL +A++AG+ +
Sbjct: 923 EQEYPNQLVVNYHMGYQEIKNNTPGEIPEIIFLYNLCRGVVN-NSYGLNVAKLAGISHDI 981
Query: 561 IETARSITSRITKKEVKRME 580
I+ A ++ ++ K +++ E
Sbjct: 982 IKQAYRVSEKV-KSDIELKE 1000
Score = 95 (38.5 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 30/101 (29%), Positives = 51/101 (50%)
Query: 28 KRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSN-EQLFFGLSQFLR 86
K SLF +L TKTI G+RLL+ + +PL I+ I R +++L S + +S FL
Sbjct: 436 KGSLFKLLNNTKTIFGSRLLQKWVSRPLVHIQDIKDRHQAIEDLQSEYNHVVDSISNFLT 495
Query: 87 KFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSI 126
K + + +L + + L + N K+ L+S++
Sbjct: 496 KIKYLDLEGLLSKIHYSSTNNNNNNLRI-NRKQVYLLLSNL 535
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 401 (146.2 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 114/386 (29%), Positives = 186/386 (48%)
Query: 155 YRSVCENEKYASIRKRIGEVID-EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCD 213
Y++ E E A +R + E+++ V A F IK D L I R+
Sbjct: 424 YQTPLETEYTAKLRNHSASLAKLEEMVETTVDLDALENHEFIIKPEFDDSLRIIRKKLDQ 483
Query: 214 TSEAV---HNLANKYREEXXXXXXXXXXXXRQGFYLSIPHKD---IQGKLPSTFIQVVKH 267
+ H + ++ G+ + + I+ K + +
Sbjct: 484 LRHDMYLEHKAVARDLDQEMDKKLFLENHRVYGWCFRLTRNEAGCIRNK--KAYQECSTQ 541
Query: 268 GNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA-LVDAIREDVSVXXXXXXXXXXXDM 326
N ++ +T + SL R Y RT+ L + +V+ V D+
Sbjct: 542 KNGVYFTTSTMQSLR-REHDQLSSNYNRTQTGLVSEVVNVAASYCPVLEQLAGVLAHLDV 600
Query: 327 IVNSFAHTISTKPVDRYTRP--HFTENGPLAIDGGRHPILESIHND--FIPNNI-FISEA 381
IV SFAH P YT+P H G + RHP +E + +D FI N++ I +
Sbjct: 601 IV-SFAHASVHAPT-AYTKPKIHPRGTGNTVLKEARHPCME-MQDDISFITNDVSLIRDE 657
Query: 382 ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESN 441
++ +I+TGPNM GKSTY++ + +I ++AQIGC+VP + + + D I R+G D+
Sbjct: 658 SSFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKG 717
Query: 442 SSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFA 500
STFM EM ET+ ++++ + SLI++DELGR TS+ DGF +AW+ EH+++ ++ + +FA
Sbjct: 718 VSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFA 777
Query: 501 SHMENLSELATIYP-NVKILHFYVVI 525
+H L+ LA YP +VK LH I
Sbjct: 778 THFHELTTLADRYPKSVKNLHVVAFI 803
Score = 79 (32.9 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DA ++R L ++ +K SLF +L KT G+RLL L QPL D+
Sbjct: 296 MKLDAAALRALNLMPGPRDG-----SKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAE 350
Query: 61 INTRLDCLDE-LMSNEQLFFGLSQFLRKFP 89
I R ++ ++S E + LR P
Sbjct: 351 IEKRQRLVEAFVVSTELRQMMQEEHLRSIP 380
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 366 (133.9 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 85/245 (34%), Positives = 143/245 (58%)
Query: 343 YTRPHFTENGPLAI--DGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYL 399
Y RP F NG AI R+PI+ES+ ++PN+I +S E + I+TGPNM GKS+Y+
Sbjct: 743 YVRPTFV-NGQQAIIAKNARNPIIESLDVHYVPNDIMMSPENGKINIITGPNMGGKSSYI 801
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+QV L+ I+AQIG +VPA + + + + TR+G D++ + STF EM + +++N
Sbjct: 802 RQVALLTIMAQIGSFVPAEEIRLSIFENVLTRIGAHDDIINGDSTFKVEMLDILHILKNC 861
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK--AYTIFASHMENLSELATIYPNVK 517
++RSL+++DE+GR T + DG AI+++ ++ L +F +H L E+ + P ++
Sbjct: 862 NKRSLLLLDEVGRGTGTHDGIAISYALIKYFSELSDCPLILFTTHFPMLGEIKS--PLIR 919
Query: 518 ILHF-YVVIRNNRLD-----FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
H YV + D F ++LK G + YG+ +A++A L +I A SI+ +
Sbjct: 920 NYHMDYVEEQKTGEDWMSVIFLYKLKKGLTY-NSYGMNVAKLARLDKDIINRAFSISEEL 978
Query: 572 TKKEV 576
K+ +
Sbjct: 979 RKESI 983
Score = 108 (43.1 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D S+++L+I H G K SLF +L T+T G R+LR +L+PL D+
Sbjct: 418 MLLDPNSLQSLDIFT--HDG--G----KGSLFWLLDHTRTSFGLRMLREWILKPLVDVHQ 469
Query: 61 INTRLDCLDELMS--NEQLFF-GLSQFLRKFP 89
I RLD ++ + S N +FF L+Q L P
Sbjct: 470 IEERLDAIECITSEINNSIFFESLNQMLNHTP 501
Score = 48 (22.0 bits), Expect = 9.5e-31, Sum P(2) = 9.5e-31
Identities = 20/98 (20%), Positives = 46/98 (46%)
Query: 12 EIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE-------TINTR 64
+++ L+ ++GT+++K F++ + T + ++ ++ L + K + + R
Sbjct: 502 DLLRTLNRIMYGTTSRKEVYFYLKQITSFVDHFKMHQSYLSEHFKSSDGRIGKQSPLLFR 561
Query: 65 LDC-LDELMSNEQL--FFGLSQFLRKFPKETDRVLCHF 99
L L+EL+S QL F + K +D+ + F
Sbjct: 562 LFSELNELLSTTQLPHFLTMINVSAVMEKNSDKQVMDF 599
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 381 (139.2 bits), Expect = 5.7e-37, Sum P(2) = 5.7e-37
Identities = 94/230 (40%), Positives = 136/230 (59%)
Query: 349 TENG-P-LAIDGGRHPIL--ESI-HNDFIPNNIFI--SEAANMVIVTGPNMSGKSTYLQQ 401
T +G P L+ G HP+L +S+ F+PNN+ I +E A+ +++TGPNM GKST L+Q
Sbjct: 1036 TSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIGGAEKASFILLTGPNMGGKSTLLRQ 1095
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
VCL VILAQIG VPA + VD+I RMG D++ + STF+TE+ ETA ++ + +
Sbjct: 1096 VCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATR 1155
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILH 520
SL+V+DELGR T++SDG AIA S EH + ++ F++H LS P V + H
Sbjct: 1156 NSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCH 1215
Query: 521 FYVVIRNN-----RLDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETA 564
I + F ++L G P YG+ +A +AGLP V++ A
Sbjct: 1216 MACQIGEGIGGVEEVTFLYRLTPGA--CPKSYGVNVARLAGLPDYVLQRA 1263
Score = 94 (38.1 bits), Expect = 5.7e-37, Sum P(2) = 5.7e-37
Identities = 41/134 (30%), Positives = 65/134 (48%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DA ++ NLEI E +S G S +L+ L T G RLL+ L +PL + E
Sbjct: 696 MVLDAAALENLEIFE--NSRNGGYSG---TLYAQLNQCITASGKRLLKTWLARPLYNTEL 750
Query: 61 INTRLDCLDELMSNEQLFFGLS--QFLRKFPKETDRVLCHFCFKPKKVTSK-----VLDV 113
I R D + ++ E L + L + L + P + +R++ F + + + VL
Sbjct: 751 IKERQDAV-AILRGENLPYSLEFRKSLSRLP-DMERLIARM-FSSIEASGRNGDKVVLYE 807
Query: 114 DNAKKS-QTLISSI 126
D AKK Q IS++
Sbjct: 808 DTAKKQVQEFISTL 821
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 389 (142.0 bits), Expect = 7.0e-37, Sum P(2) = 7.0e-37
Identities = 91/250 (36%), Positives = 153/250 (61%)
Query: 340 VDRYTRPHFTENGPLAID--GGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKS 396
VD Y RP F P I+ GR+PI+ES+ ++PN++ ++ E ++I+TGPNM GKS
Sbjct: 746 VD-YVRPKFN-TAPQCINVINGRNPIIESLDVRYMPNDVNLNREGKKIMIITGPNMGGKS 803
Query: 397 TYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVM 456
+Y++QV L+VI+AQIGCYVPA + + D+IFTR+G DNL N STF EM E ++
Sbjct: 804 SYIRQVALLVIMAQIGCYVPAQEAEFSIFDQIFTRIGAYDNLLRNDSTFKIEMTEMVQIL 863
Query: 457 QNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIY 513
++ +E SL+++DE+GR T + DG +I+++ + + L +F +H +L + +
Sbjct: 864 RSSTENSLLLLDEVGRGTGTHDGISISYALLRYFIELHNACPLILFITHYASLGSIRS-- 921
Query: 514 PNVKILHF-YVVIRN---N--RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
P + H Y+ + N + F ++LK+G H YGL +A++A + + +I A I
Sbjct: 922 PILGNYHMSYIEEKRPGENWPSVVFLYKLKEGRAH-NSYGLNVAKLADIQTGIINRAYKI 980
Query: 568 TSRITKKEVK 577
++ + K+E++
Sbjct: 981 STML-KQEME 989
Score = 80 (33.2 bits), Expect = 7.0e-37, Sum P(2) = 7.0e-37
Identities = 43/163 (26%), Positives = 74/163 (45%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M + ++++ +L+I E +S + K SL +L T+T G R L+ + +PL +I+
Sbjct: 421 MILPSSAIESLDIFE--NST---DRSSKGSLLWVLDHTRTNYGLRNLKNWIAKPLINIDQ 475
Query: 61 INTRLDCLDELMSNE--QLFF-GLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
I RLD + + +S E +F L+ LR ++ +R+L + L +
Sbjct: 476 IQQRLDAV-QCISTEVGNIFIESLNNMLRD-GQDLERILNRIAYGKTSRREVYLFLRELT 533
Query: 118 KSQTLISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCE 160
+ TL SS K+ QS LLANI+ + E
Sbjct: 534 QLATLFSSH-HRYIETNVLSANGKIRM--QSSLLANIFTDLDE 573
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 375 (137.1 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 89/251 (35%), Positives = 142/251 (56%)
Query: 345 RPHFT--ENGPLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQ 401
RP F E + + RHP + + +DFIPN+I + + AN+ ++TG N +GKST L+
Sbjct: 931 RPTFVDHERSVVEFEELRHPCMLNTVDDFIPNDIKLGGDDANINLLTGANAAGKSTVLRM 990
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
C+ VI+AQIGCYVPA + + VDRI +R+G DN+ + STF E+ ET ++ +
Sbjct: 991 SCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1050
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILH 520
RSL+++DELGR TSS DG A+A + H+ S + FA+H +L+ +P ++
Sbjct: 1051 RSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRAKR 1110
Query: 521 FYVVIRN--NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI------TSRIT 572
+ + + R+ F ++L+DG +G+ A + G+ VIE A TSR+
Sbjct: 1111 MQIQVDDAKRRVTFLYRLEDGVAE-GSFGMHCAAMCGISDRVIERAEVAAKEWEHTSRL- 1168
Query: 573 KKEVKRMEINC 583
K+ + R + C
Sbjct: 1169 KESLDRAKTGC 1179
Score = 97 (39.2 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 43/178 (24%), Positives = 76/178 (42%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S+ NLE+ +S G +LF++L T G RL R + PL +I+ IN
Sbjct: 626 LDGQSLINLEVFS--NSVNGGPEG---TLFNLLNRCITPFGKRLFRQWVCHPLCNIKKIN 680
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTS--KVLD-VDNAKKS 119
RLD +D L ++ + S + K P + +R++ K +VL+ + + +
Sbjct: 681 ERLDAVDMLNADRSILEQFSSLMSKMP-DLERLISRIHAGVCKAEDFVRVLEGFEQIEYA 739
Query: 120 QTLISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+++S+ LK+ +F + R +EK + I E DE
Sbjct: 740 MSMLSAFGGGNGLVDRLISSMLDLKEPLTFWKSAFDRKKVRDEKLLIPERGIEEDFDE 797
Score = 39 (18.8 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 141 KVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
++ KD QS L C++ K+ + K I ++
Sbjct: 804 RIKKDLQSLLDKQKAALKCKSLKFTDVGKEIYQI 837
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 382 (139.5 bits), Expect = 3.2e-36, Sum P(2) = 3.2e-36
Identities = 90/241 (37%), Positives = 141/241 (58%)
Query: 351 NGPLAIDGGRHPILESIHN---DFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIV 406
NG L+ RHP + N +FIPN++ + ++ A + ++TG N +GKST L+ C+ V
Sbjct: 868 NGYLSFKELRHPCYNAGVNGATEFIPNDVHLGKSTAQIALLTGANAAGKSTILRMTCIAV 927
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
I+AQ+GCYVP + + +DRI TR+G DN+ STF E+ ET ++ + R+LIV
Sbjct: 928 IMAQLGCYVPCEDAELSPMDRIMTRLGANDNIMQGKSTFFVELSETRKILDMATNRTLIV 987
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
+DELGR SSSDGFAIA H+ + +++ FA+H L + T +P VK L +++
Sbjct: 988 LDELGRGGSSSDGFAIAEGVLHHISTHVQSLGFFATHYGTLGQSFTHHPMVKPLQMAILV 1047
Query: 526 R--NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI------TSRITKKEVK 577
+ ++ F ++L +G +G+ +A + G+P +V+E A TSRI K E K
Sbjct: 1048 DEGSKKVTFLYKLIEGQSE-GSFGMHVAAMCGIPRSVVENAERAAESFEHTSRILK-ERK 1105
Query: 578 R 578
R
Sbjct: 1106 R 1106
Score = 84 (34.6 bits), Expect = 3.2e-36, Sum P(2) = 3.2e-36
Identities = 38/127 (29%), Positives = 62/127 (48%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +++NLEI ++ GT K +LF ++ T G R +R ++ PL E I
Sbjct: 544 LDGITLQNLEIFA---NSFDGTD--KGTLFKLVNRAITPMGKRQMRTWVMHPLLRKEHIE 598
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLC--HFCFKPKKVTSKVL-DVDNAKKS 119
RLD +D+L++ + L L P + +R+L H P K KV+ +N +
Sbjct: 599 ERLDSVDQLLNEMPIRDLLESSLTGLP-DLERLLARVHSGNLPIKDFDKVICGFENIVR- 656
Query: 120 QTLISSI 126
LISS+
Sbjct: 657 --LISSL 661
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 386 (140.9 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 90/246 (36%), Positives = 142/246 (57%)
Query: 345 RPHFTEN--GPLAIDGGRHPILESIHNDFIPNNIFISEAA-NMVIVTGPNMSGKSTYLQQ 401
RP F E+ L + RHP L S +DFIPN+I + + N+ ++TG N +GKST L+
Sbjct: 895 RPTFVEDERSVLEFEELRHPCLISSVDDFIPNDIQLGGSGPNIDLLTGANAAGKSTLLRM 954
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
C+ VI+AQ+GCY+P + + VDRI +R+G DN+ + STF E+ ET ++ +
Sbjct: 955 TCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1014
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILH 520
RSL+++DELGR TSS DG A+A + H+ + + A FA+H +L+ +P +K
Sbjct: 1015 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFENHPEIKPKR 1074
Query: 521 FYVVIRNN--RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI------TSRIT 572
+ + N R+ F ++L+DG +G+ A + G+P+ VIE A TSR+T
Sbjct: 1075 MKIHVDENERRVTFLYKLEDGVAE-GSFGMHCAAMCGIPNKVIERAEVAAKQWEHTSRLT 1133
Query: 573 KKEVKR 578
+ +R
Sbjct: 1134 ESLERR 1139
Score = 79 (32.9 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++ N+EI +S G +LF +L T G R+ + + PL D + IN
Sbjct: 589 LDGQTLINMEIFA--NSFDGGVDG---TLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRIN 643
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
RLD +D L ++ + + L K P + +R++
Sbjct: 644 ARLDAVDALNADSSVRDQFASQLTKMP-DLERLI 676
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 386 (140.9 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 90/246 (36%), Positives = 142/246 (57%)
Query: 345 RPHFTEN--GPLAIDGGRHPILESIHNDFIPNNIFISEAA-NMVIVTGPNMSGKSTYLQQ 401
RP F E+ L + RHP L S +DFIPN+I + + N+ ++TG N +GKST L+
Sbjct: 895 RPTFVEDERSVLEFEELRHPCLISSVDDFIPNDIQLGGSGPNIDLLTGANAAGKSTLLRM 954
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
C+ VI+AQ+GCY+P + + VDRI +R+G DN+ + STF E+ ET ++ +
Sbjct: 955 TCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1014
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILH 520
RSL+++DELGR TSS DG A+A + H+ + + A FA+H +L+ +P +K
Sbjct: 1015 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFENHPEIKPKR 1074
Query: 521 FYVVIRNN--RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI------TSRIT 572
+ + N R+ F ++L+DG +G+ A + G+P+ VIE A TSR+T
Sbjct: 1075 MKIHVDENERRVTFLYKLEDGVAE-GSFGMHCAAMCGIPNKVIERAEVAAKQWEHTSRLT 1133
Query: 573 KKEVKR 578
+ +R
Sbjct: 1134 ESLERR 1139
Score = 79 (32.9 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++ N+EI +S G +LF +L T G R+ + + PL D + IN
Sbjct: 589 LDGQTLINMEIFA--NSFDGGVDG---TLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRIN 643
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
RLD +D L ++ + + L K P + +R++
Sbjct: 644 ARLDAVDALNADSSVRDQFASQLTKMP-DLERLI 676
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 347 (127.2 bits), Expect = 9.9e-36, Sum P(2) = 9.9e-36
Identities = 90/232 (38%), Positives = 128/232 (55%)
Query: 354 LAIDGGRHPILESIH--NDFIPNNIFIS------EA-------ANMVIVTGPNMSGKSTY 398
L + G RHP + +DFIPN+IFI EA A V+VTGPNM GKST
Sbjct: 1093 LDLRGSRHPCVTKTFFGDDFIPNDIFIGCPGDEEEAQDDAKALAPCVLVTGPNMGGKSTL 1152
Query: 399 LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
++Q L+VILAQ+GCYVPA + VDR+FTR+G D + S STF E+ ETA ++ +
Sbjct: 1153 MRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILLH 1212
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVK 517
+ SL+++DELGR T++ DG AIA + + L + T+F++H +L E P V+
Sbjct: 1213 ATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLVEDHVQDPAVR 1272
Query: 518 ILHFYVVIRNNRLD-----FKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIET 563
+ H ++ N D F K P YG A +A +P VI++
Sbjct: 1273 LGHMACMVENECEDPSQETITFLYKFIRGACPKSYGFNAARLANIPEDVIQS 1324
Score = 121 (47.7 bits), Expect = 9.9e-36, Sum P(2) = 9.9e-36
Identities = 83/400 (20%), Positives = 152/400 (38%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++ NLEI++ +S+ T + +L L T T G RLL+ + PL + +
Sbjct: 734 MVLDGVTLANLEILQ--NSS---TGGPEGTLLERLDTCCTPFGKRLLKQWICAPLCNPSS 788
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLC--HFCFKPKK----VTSKVLDVD 114
I RLD L++LM ++ L+K P + +R+L H P K S+ + +
Sbjct: 789 IGDRLDALEDLMGAPSQTSEVTDLLKKLP-DLERLLSKIHSMGTPLKGQDHPDSRAILYE 847
Query: 115 NAKKSQTLISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIYRSVC----ENEK--YASIR 168
S+ I+ + +++ L + + R V ENE + +
Sbjct: 848 EVVYSKRKIADFLAALEGFKVMKEIVSIMEPVGEGLKSKLLRQVVLLKTENEDGLFPDLS 907
Query: 169 KRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREE 228
+ D H + ART K G D D A + + + ++ ++
Sbjct: 908 PELKRW-DTAFDHQK----ARTTGVITPKAGFDPEYDQALNGIKECERDLQDYLDRQKKR 962
Query: 229 XXXXXXXXXXXXRQGFYLSIPHKDIQGKLPSTF-IQVVKHGNNIHCSTLELASLNVRNKS 287
R + L +P + LP + ++ K G + ST ++ + +S
Sbjct: 963 LGCKNLSYWGTGRNRYQLEVPESVSERSLPEEYEVRSTKKGWKRY-STKDIERMFSELQS 1021
Query: 288 AAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPH 347
+ + C+ L ++ D++++ ++ S RP
Sbjct: 1022 WEDKRDAALKDCMRRLFYNFDKNYKDWQTAVECMAVLDVLLSMCRYSQSAD--GSMARPE 1079
Query: 348 FTENG------P-LAIDGGRHPILESIH--NDFIPNNIFI 378
G P L + G RHP + +DFIPN+IFI
Sbjct: 1080 MALPGDGSYSAPFLDLRGSRHPCVTKTFFGDDFIPNDIFI 1119
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 349 (127.9 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 92/268 (34%), Positives = 140/268 (52%)
Query: 354 LAIDGGRHPILESIH--NDFIPNNIFIS----EAAN----MVIVTGPNMSGKSTYLQQVC 403
L + G RHP + +DFIPN+I I E N V+VTGPNM GKST ++Q
Sbjct: 1089 LDLKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAG 1148
Query: 404 LIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERS 463
L+ I+AQ+GCYVPA + +DR+FTR+G D + S STF E+ ETA ++ + + S
Sbjct: 1149 LLAIMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHS 1208
Query: 464 LIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFY 522
L+++DELGR T++ DG AIA + + L ++K T+F++H +L E + V++ H
Sbjct: 1209 LVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMA 1268
Query: 523 VVIRNNRLD-----FKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITK--K 574
++ N D F K P YG A +A LP VI+ K +
Sbjct: 1269 CMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQ 1328
Query: 575 EVKRMEINCLQYKQIQMLYHAAQRLICL 602
++ CL ++ + A +L+ L
Sbjct: 1329 SLRLFREVCLASERSTVDADAVHKLLTL 1356
Score = 117 (46.2 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 86/399 (21%), Positives = 148/399 (37%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M +DA ++ NLEI L GT+ +L + T T G RLL+ L PL +
Sbjct: 732 MVLDAVTLNNLEIF------LNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPH 785
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLC--HFCFKPKKVT----SKVLDV 113
IN RLD +++LM + L+K P + +R+L H P K S+ +
Sbjct: 786 AINDRLDAIEDLMVVPDKISEVVDLLKKLP-DLERLLSKIHNVGSPLKSQNHPDSRAIMY 844
Query: 114 DNA----KKSQTLISSIIXXXXXXXXXXXXXKVLKDAQSFLLANIY--RSVCENEKYASI 167
+ KK +S++ +V+ D +S +L + ++ ++ +
Sbjct: 845 EETTYSKKKIIDFLSALEGFKVICKIIGIMEEVIDDFKSKILKQVLTLQTKSPEGRFPDL 904
Query: 168 RKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYRE 227
+ D H + AR K G D D A + +++ K R
Sbjct: 905 TSELNRW-DTAFDHEK----ARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRS 959
Query: 228 EXXXXXXXXXXXXRQGFYLSIPHKDIQGKLPSTF-IQVVKHG-NNIHCSTLELASLNVRN 285
R + L IP I LP + ++ K G T+E N+ N
Sbjct: 960 RIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLGNLIN 1019
Query: 286 KSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIV--NSFAHTISTKPVDRY 343
+ ++ C+ L ++ D+++ +++ P+ R
Sbjct: 1020 AEERRDASLKD--CMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLTNYSRG-GDGPMCRP 1076
Query: 344 TRPHFTENGPLAID--GGRHPILESIH--NDFIPNNIFI 378
E+ P +D G RHP + +DFIPN+I I
Sbjct: 1077 IILLPEEDTPPFLDLKGSRHPCITKTFFGDDFIPNDILI 1115
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 367 (134.2 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 77/209 (36%), Positives = 124/209 (59%)
Query: 360 RHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP S +FIPN++ + + + ++TG N +GKST ++ L +IL+QIGCY+PA
Sbjct: 938 RHPCFVST-KEFIPNDVQLGGDEPHFGLLTGANAAGKSTLMRTTALAIILSQIGCYIPAE 996
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ + VDRI TR+G DN+ STF E+ ET ++ N + RSL+++DELGR SSSD
Sbjct: 997 SAELTPVDRIMTRLGANDNILQGKSTFFVELSETKKILSNATPRSLVILDELGRGGSSSD 1056
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN--RLDFKFQ 535
GFAIA S HL + +++ FA+H L +P +K L +V+ + + F ++
Sbjct: 1057 GFAIAESVLHHLATHVQSLGFFATHYGTLGLSFKTHPQIKQLRMGIVVDSGSRNITFLYK 1116
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETA 564
L+ G +G+ +A + G+P +++ A
Sbjct: 1117 LETGTAP-KSFGMNVASMCGIPDAIVDNA 1144
Score = 93 (37.8 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++ NLEI L++ GT+ K +LF ++ T G R L+ +L PL ++
Sbjct: 612 MILDGVTLNNLEI---LNNTSDGTT--KGTLFKLVNRATTSFGKRQLQKWVLHPLFKVDE 666
Query: 61 INTRLDCLDELMSNE-QLFFGLSQFLRKFPKETDRVL 96
IN R D +D LM++ +L L L P + +R+L
Sbjct: 667 INQRYDSVDYLMNDGLELRSILQDTLANIP-DLERLL 702
>UNIPROTKB|Q7S0U7 [details] [associations]
symbol:NCU07407 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0043504 "mitochondrial DNA repair" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 OMA:RVGGFYE EMBL:AABX02000038
RefSeq:XP_958182.2 UniGene:Ncr.21352 EnsemblFungi:EFNCRT00000007377
GeneID:3874329 KEGG:ncr:NCU07407 Uniprot:Q7S0U7
Length = 1184
Score = 351 (128.6 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 72/161 (44%), Positives = 106/161 (65%)
Query: 356 IDGGRHPILE----SIHNDFIPNNIFISEAANMVI--VTGPNMSGKSTYLQQVCLIVILA 409
I GGRHP +E S F N+ I I +TGPNM+GKST+L+Q LI ILA
Sbjct: 944 IVGGRHPTVEPSLLSRGMTFQKNDCLIGSPGQGAIWLITGPNMAGKSTFLRQNALITILA 1003
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+GCYVPA ++ + +VD IF+R+G+ DNL ++ STFM EM ETA +++ + RS ++MDE
Sbjct: 1004 QMGCYVPADYAELGIVDAIFSRVGSADNLYADQSTFMVEMMETAAILRQATPRSFVIMDE 1063
Query: 470 LGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSEL 509
+GR T+ DG A+A++ HLL++ K +FA+H + ++
Sbjct: 1064 IGRGTTPEDGTAVAFASLHHLLTVNKCRGLFATHFHAVGDM 1104
Score = 328 (120.5 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 76/198 (38%), Positives = 119/198 (60%)
Query: 386 IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTF 445
++TGPNM+GKST+L+Q LI ILAQ+GCYVPA ++ + +VD IF+R+G+ DNL ++ STF
Sbjct: 980 LITGPNMAGKSTFLRQNALITILAQMGCYVPADYAELGIVDAIFSRVGSADNLYADQSTF 1039
Query: 446 MTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHM- 503
M EM ETA +++ + RS ++MDE+GR T+ DG A+A++ HLL++ K +FA+H
Sbjct: 1040 MVEMMETAAILRQATPRSFVIMDEIGRGTTPEDGTAVAFASLHHLLTVNKCRGLFATHFH 1099
Query: 504 ---ENLSELATIYPNVKI-------LHFYV--VIRNNRLDFKF--QLKDGPRHVPHYGLL 549
+ L E + + + Y V + F + +L+ G H L
Sbjct: 1100 AVGDMLKEQGLVVEDGASSAGASWGVAMYCTDVEEDESGGFVYVHKLRKGMNRQSH-ALK 1158
Query: 550 LAEVAGLPSTVIETARSI 567
+A +AGLP I+ A+ +
Sbjct: 1159 VARLAGLPEPAIKIAQQV 1176
Score = 110 (43.8 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 31/99 (31%), Positives = 48/99 (48%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S+R+LEI + + + S L H ++ T T G RLL L P +
Sbjct: 485 MTIDKNSMRSLEIKKTMREGFFAGS-----LLHAIRRTVTKSGARLLNEWLSAPSTSLSV 539
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHF 99
IN+RLD + +SN L ++ L + +T R++ F
Sbjct: 540 INSRLDLITRFISNPDLSDAITVLLHR-SHDTQRLVQKF 577
Score = 37 (18.1 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 23 GTSNKKRSLFHMLKTTK 39
GT KK SL ++T K
Sbjct: 413 GTGQKKESLSENIQTLK 429
Score = 37 (18.1 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 104 KKVTSKVLDVDNAKKSQTLISS 125
K++ +L +D SQT ++S
Sbjct: 137 KRIKRTILQLDQLPVSQTTLTS 158
Score = 37 (18.1 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 27 KKRSLFHMLKTTKTIGGTRLLRANLLQPLKD--IETINTRLDCLDELMS-NEQLFFGLSQ 83
K L H + T+ + L+ N + P + I I+ D L+ S E L G Q
Sbjct: 357 KSGGLMHNRRVTRIVTPGTLIDENFMDPYANNYIMAIHLPSDSLEGSSSFQEALNTGTGQ 416
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 379 (138.5 bits), Expect = 4.2e-35, Sum P(2) = 4.2e-35
Identities = 92/244 (37%), Positives = 139/244 (56%)
Query: 341 DRYTRPHFTENGPLAIDGGRHPILESIHND----FIPNNIFISEAANMVIVTGPNMSGKS 396
+ +T P + L+++GGRH ++ES D FIPN+ + + +++GPNM GKS
Sbjct: 681 NNWTCPKLIKTPRLSVEGGRHVVVESSLKDSGNMFIPNDSKMGTDGTLWVISGPNMGGKS 740
Query: 397 TYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVM 456
TYL+Q LIVILAQIG +VPA +TI +VD+IFTR+G D+L ++ STFM EM E + ++
Sbjct: 741 TYLRQNALIVILAQIGSFVPAEKATIGLVDKIFTRIGATDDLFNDLSTFMVEMVEVSNIL 800
Query: 457 QNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPN 515
N + SL ++DE+GR TS +G AIA++ LL + K T+FA+H E + N
Sbjct: 801 TNATPSSLAIVDEIGRGTSGKEGLAIAYATLLSLLQVNKCRTLFATHFGKELEQLLVANN 860
Query: 516 V---KILHFYV-VIRN--NRLDFKFQ--LKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ I +F V+ N N F L+ G H L +A +AG P ++ A +
Sbjct: 861 IDQKNIRYFRTRVLENGDNEKGFVIDHTLEPGISERSH-ALDVARMAGFPENALKAAEKV 919
Query: 568 TSRI 571
+
Sbjct: 920 LDNL 923
Score = 73 (30.8 bits), Expect = 4.2e-35, Sum P(2) = 4.2e-35
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 9 RNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCL 68
R E +E + G ++ SL ++K T T GTRLL + P D + I R +
Sbjct: 327 RTREALELTERTIAGRTSSVGSLVSVIKRTCTSSGTRLLTEWIKSPSLDTKDIEKRQSFV 386
Query: 69 DELMSNEQLFFGLSQFLRK 87
+ N+ L Q L++
Sbjct: 387 KMFLKNQHLKIVTRQHLQQ 405
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 349 (127.9 bits), Expect = 8.0e-35, Sum P(2) = 8.0e-35
Identities = 87/226 (38%), Positives = 127/226 (56%)
Query: 354 LAIDGGRHPILESIH--NDFIPNNIFIS---EA-----ANMVIVTGPNMSGKSTYLQQVC 403
L G RHP + +DFIPN+I I EA A V+VTGPNM GKST ++Q
Sbjct: 1087 LEFKGSRHPCITKTFFGDDFIPNDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAG 1146
Query: 404 LIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERS 463
L+ ++AQ+GCYVPA + VDR+FTR+G D + S STF E+ ETA ++++ + S
Sbjct: 1147 LLAVMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHS 1206
Query: 464 LIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFY 522
L+++DELGR T++ DG AIA + + L ++K T+F++H +L E + V++ H
Sbjct: 1207 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMA 1266
Query: 523 VVIRNNRLD-----FKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIE 562
++ N D F K P YG A +A LP VI+
Sbjct: 1267 CMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQ 1312
Score = 110 (43.8 bits), Expect = 8.0e-35, Sum P(2) = 8.0e-35
Identities = 89/398 (22%), Positives = 144/398 (36%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M +DA ++ NLEI L GT+ +L L T T G RLL+ L PL
Sbjct: 730 MVLDAVTLNNLEIF------LNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSPS 783
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLC--HFCFKPKKVT----SKVLDV 113
I+ RLD +++LM+ ++ L+K P + +R+L H P K S+ +
Sbjct: 784 AISDRLDAVEDLMAVPDKVTEVADLLKKLP-DLERLLSKIHNVGSPLKSQNHPDSRAIMY 842
Query: 114 DNAKKSQTLISSIIXXXXXXXXXXXXXKVLKD-AQSFLLANIYRSVCENEKYASIRKRIG 172
+ S+ I + +L++ A F + + V K S + R
Sbjct: 843 EETTYSKKKIIDFLSALEGFKVMCKVSGLLEEVAGGFTSKTLKQVVTLQSK--SPKGRFP 900
Query: 173 EVIDEDVLHARVPF---VARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEX 229
++ E + F AR K G D D A + +++ +K R
Sbjct: 901 DLTAE-LQRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLDKQRSRL 959
Query: 230 XXXXXXXXXXXRQGFYLSIPHKDIQGKLPSTF-IQVVKHG-NNIHCSTLELASLNVRNKS 287
R + L IP LP + ++ K G T+E N+ N
Sbjct: 960 GCKSIVYWGIGRNRYQLEIPENFATRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAE 1019
Query: 288 AAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPH 347
+ ++ C+ L ++ D+++ A+ S RP
Sbjct: 1020 ERRDTSLKD--CMRRLFCNFDKNHKDWQSAVECIAVLDVLL-CLAN-YSQGGDGPMCRPE 1075
Query: 348 FTENG----P-LAIDGGRHPILESIH--NDFIPNNIFI 378
G P L G RHP + +DFIPN+I I
Sbjct: 1076 IVLPGEDTHPFLEFKGSRHPCITKTFFGDDFIPNDILI 1113
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 365 (133.5 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 91/254 (35%), Positives = 138/254 (54%)
Query: 339 PVDRYTRPHFTENGPLAIDGGRHPILESIH--NDFIPNNIFISEA-------ANMVIVTG 389
PVD + P F E + RHP + +DFIPN+I I A+ V+VTG
Sbjct: 1063 PVD--SAPPFLE-----LKNARHPCITKTFFGDDFIPNDIVIGSKDEDGGSEASCVLVTG 1115
Query: 390 PNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEM 449
PNM GKST ++Q L+VI+AQ+GCYVPA + +DR+FTR+G D + S STF E+
Sbjct: 1116 PNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVEL 1175
Query: 450 KETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSE 508
ET+ ++Q+ +E SL+++DELGR T++ DG AIA + L ++K T+F++H +L E
Sbjct: 1176 SETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVE 1235
Query: 509 LATIYPNVKILHFYVVIRNNRLD-------FKFQLKDGPRHVPH-YGLLLAEVAGLPSTV 560
+ V++ H ++ N D F ++ +G P YG A +A +P +
Sbjct: 1236 DYSGSAAVRLGHMACMVENESEDPSQETITFLYKFIEGA--CPKSYGFNAARLADIPEEI 1293
Query: 561 IETARSITSRITKK 574
I+ KK
Sbjct: 1294 IQKGHRKAKEFEKK 1307
Score = 91 (37.1 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 27/96 (28%), Positives = 54/96 (56%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++ NLE+++ + GT+ + +L + + T G RLL+ L PL + +
Sbjct: 714 MVLDGVTLMNLEVLQ---NGTNGTT--EGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTS 768
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
IN RLD +++L++ +++ L+K P + +R+L
Sbjct: 769 INDRLDAVEDLLAVPAKLTEITEHLKKLP-DLERLL 803
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 365 (133.5 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 91/254 (35%), Positives = 138/254 (54%)
Query: 339 PVDRYTRPHFTENGPLAIDGGRHPILESIH--NDFIPNNIFISEA-------ANMVIVTG 389
PVD + P F E + RHP + +DFIPN+I I A+ V+VTG
Sbjct: 1079 PVD--SAPPFLE-----LKNARHPCITKTFFGDDFIPNDIVIGSKDEDGGSEASCVLVTG 1131
Query: 390 PNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEM 449
PNM GKST ++Q L+VI+AQ+GCYVPA + +DR+FTR+G D + S STF E+
Sbjct: 1132 PNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVEL 1191
Query: 450 KETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSE 508
ET+ ++Q+ +E SL+++DELGR T++ DG AIA + L ++K T+F++H +L E
Sbjct: 1192 SETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVE 1251
Query: 509 LATIYPNVKILHFYVVIRNNRLD-------FKFQLKDGPRHVPH-YGLLLAEVAGLPSTV 560
+ V++ H ++ N D F ++ +G P YG A +A +P +
Sbjct: 1252 DYSGSAAVRLGHMACMVENESEDPSQETITFLYKFIEGA--CPKSYGFNAARLADIPEEI 1309
Query: 561 IETARSITSRITKK 574
I+ KK
Sbjct: 1310 IQKGHRKAKEFEKK 1323
Score = 91 (37.1 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 27/96 (28%), Positives = 54/96 (56%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++ NLE+++ + GT+ + +L + + T G RLL+ L PL + +
Sbjct: 730 MVLDGVTLMNLEVLQ---NGTNGTT--EGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTS 784
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
IN RLD +++L++ +++ L+K P + +R+L
Sbjct: 785 INDRLDAVEDLLAVPAKLTEITEHLKKLP-DLERLL 819
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 361 (132.1 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 85/236 (36%), Positives = 140/236 (59%)
Query: 346 PHFTENGPLAIDGGRHPILE---SIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQ 400
P E+ L + GRH ++E S + F NN +++ N+ ++TGPNM GKST+L+
Sbjct: 724 PKVDESNKLEVVNGRHLMVEEGLSARSLETFTANNCELAKD-NLWVITGPNMGGKSTFLR 782
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
Q +IVILAQIGC+VP + + +VD++F+R+G+ D+L + STFM EM ET+F++Q +
Sbjct: 783 QNAIIVILAQIGCFVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVEMIETSFILQGAT 842
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHM-ENLSELAT------I 512
ERSL ++DE+GR TS +G +IA++ ++LL + + T+FA+H + L ++ +
Sbjct: 843 ERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFATHFGQELKQIIDNKCSKGM 902
Query: 513 YPNVKILHFYVV-IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
VK + + N + +LK G + +AE+AG P ++ AR I
Sbjct: 903 SEKVKFYQSGITDLGGNNFCYNHKLKPGIC-TKSDAIRVAELAGFPMEALKEAREI 957
Score = 91 (37.1 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 33/101 (32%), Positives = 46/101 (45%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ + LE LHS + +NKK SL ++ T T GTRLL L P D++
Sbjct: 363 MQIDSRTSTALE----LHSTV-RDNNKKGSLLSSIRRTVTPSGTRLLSQWLSGPSLDLKE 417
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF 101
I R + N + L L+K + R+L F F
Sbjct: 418 IKKRQKIVAFFKDNRDITETLRTMLKKV-NDLSRILQKFSF 457
Score = 39 (18.8 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 203 LLDIARRSFCDTSEAVHNLA 222
++D+ +R F D S V +A
Sbjct: 681 IIDLFKRKFIDRSNEVRQVA 700
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 372 (136.0 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
Identities = 112/394 (28%), Positives = 212/394 (53%)
Query: 244 FYLSIPHKDIQGKLPSTFIQV--VKHGNNIHC-STLELASLNVRNKSA-AGECYIRTEIC 299
+ + +P+ +I+ K+P+++ ++ K + H + L + ++K A A C +
Sbjct: 768 YLIEVPNTEIR-KVPASWAKISGTKKLSRFHTPEVVRLIAERDQHKEALAAAC----DAA 822
Query: 300 LEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFT-ENGP--LAI 356
+A++ +I + D ++ SFA ++ P Y++P ++ P +A+
Sbjct: 823 FKAMLASIADQYQPLRDAVSSLATLDCLL-SFAQ-VAALP--GYSKPIILPDSHPPTIAV 878
Query: 357 DGGRHPILE-SIHNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GGRHPI E ++ + +IP + +S A + +VTGPNM GKS++++ + L+V+LAQ+G +
Sbjct: 879 AGGRHPIAEHTLPSGYIPFSTTLSSPAPLAHLVTGPNMGGKSSFVRALALLVLLAQVGSF 938
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + D I+TRMG DNL + STFM E+ ETA +++ + RSL+++DELGR T
Sbjct: 939 VPADSLRLTLSDAIYTRMGASDNLFAGESTFMVEVGETAAILRTATPRSLVLLDELGRGT 998
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG AIA + +H++ + + T+F +H ++L+ +A + + ++ ++R D
Sbjct: 999 STHDGAAIAHAVLDHVVRNTRCLTLFITHYQSLARVAEGLGTGLVRNVHMRFTSSRDDND 1058
Query: 534 FQLKDGPRHVPHYGLLLAEVA-GLP--STVIETARSITSRITKK--EVKRMEINCLQYK- 587
KD V L EVA G+ S + AR +RI +K EV + ++
Sbjct: 1059 DGDKDQDDDVGENITFLYEVADGVAHRSYGLNVAR--LARIPRKILEVAARKSRKMEEDV 1116
Query: 588 QIQMLYHAAQRLICLKYSNQDEESIRHALQNLKE 621
+ + L A + L + + ++ + H L ++++
Sbjct: 1117 RTRRLRSATKLLEAVCRGDGSDDQLEHLLSSIEQ 1150
Score = 79 (32.9 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M I+ T++ +LE+ +S +K SL L T+T G R+LR L +PL D E
Sbjct: 542 MCINGTTLESLEVYR--NST---DHTEKGSLLWALDKTRTRFGQRMLRKWLGRPLLDKER 596
Query: 61 INTRLDCLDELMSN 74
++ R+ ++EL N
Sbjct: 597 LDDRVAAVEELFEN 610
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 356 (130.4 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 121/440 (27%), Positives = 191/440 (43%)
Query: 188 ARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLS 247
AR K G D D A + +++ K R R + L
Sbjct: 619 ARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLE 678
Query: 248 IPHKDIQGKLPSTF-IQVVKHG-NNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVD 305
IP LP + ++ K G T+E N+ N + ++ C+ L
Sbjct: 679 IPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKD--CMRRLFY 736
Query: 306 AIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFT--ENGP--LAIDGGRH 361
++ D+++ A+ S RP E+ P L + G RH
Sbjct: 737 NFDKNYKDWQSAVECIAVLDVLL-CLAN-YSRGGDGPMCRPVILLPEDTPPFLELKGSRH 794
Query: 362 PILESIH--NDFIPNNIFIS----EAAN----MVIVTGPNMSGKSTYLQQVCLIVILAQI 411
P + +DFIPN+I I E N V+VTGPNM GKST ++Q L+ ++AQ+
Sbjct: 795 PCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQM 854
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
GCYVPA + +DR+FTR+G D + S STF E+ ETA ++ + + SL+++DELG
Sbjct: 855 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELG 914
Query: 472 RATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R T++ DG AIA + + L ++K T+F++H +L E + V++ H ++ N
Sbjct: 915 RGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 974
Query: 531 D-----FKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITK--KEVKRMEIN 582
D F K P YG A +A LP VI+ K + ++
Sbjct: 975 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1034
Query: 583 CLQYKQIQMLYHAAQRLICL 602
CL ++ + A +L+ L
Sbjct: 1035 CLASERSTVDAEAVHKLLTL 1054
Score = 95 (38.5 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M +DA ++ NLEI L GT+ +L + T T G RLL+ L PL +
Sbjct: 431 MVLDAVTLNNLEIF------LNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHY 484
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
IN RLD +++LM + + L+K P + +R+L
Sbjct: 485 AINDRLDAIEDLMVVPDKISEVVELLKKLP-DLERLL 520
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 356 (130.4 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 121/440 (27%), Positives = 191/440 (43%)
Query: 188 ARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLS 247
AR K G D D A + +++ K R R + L
Sbjct: 791 ARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLE 850
Query: 248 IPHKDIQGKLPSTF-IQVVKHG-NNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVD 305
IP LP + ++ K G T+E N+ N + ++ C+ L
Sbjct: 851 IPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKD--CMRRLFY 908
Query: 306 AIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFT--ENGP--LAIDGGRH 361
++ D+++ A+ S RP E+ P L + G RH
Sbjct: 909 NFDKNYKDWQSAVECIAVLDVLL-CLAN-YSRGGDGPMCRPVILLPEDTPPFLELKGSRH 966
Query: 362 PILESIH--NDFIPNNIFIS----EAAN----MVIVTGPNMSGKSTYLQQVCLIVILAQI 411
P + +DFIPN+I I E N V+VTGPNM GKST ++Q L+ ++AQ+
Sbjct: 967 PCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQM 1026
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
GCYVPA + +DR+FTR+G D + S STF E+ ETA ++ + + SL+++DELG
Sbjct: 1027 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELG 1086
Query: 472 RATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R T++ DG AIA + + L ++K T+F++H +L E + V++ H ++ N
Sbjct: 1087 RGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 1146
Query: 531 D-----FKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITK--KEVKRMEIN 582
D F K P YG A +A LP VI+ K + ++
Sbjct: 1147 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1206
Query: 583 CLQYKQIQMLYHAAQRLICL 602
CL ++ + A +L+ L
Sbjct: 1207 CLASERSTVDAEAVHKLLTL 1226
Score = 95 (38.5 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M +DA ++ NLEI L GT+ +L + T T G RLL+ L PL +
Sbjct: 603 MVLDAVTLNNLEIF------LNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHY 656
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
IN RLD +++LM + + L+K P + +R+L
Sbjct: 657 AINDRLDAIEDLMVVPDKISEVVELLKKLP-DLERLL 692
>UNIPROTKB|F1N8B7 [details] [associations]
symbol:F1N8B7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007292
"female gamete generation" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:AADN02049793 IPI:IPI00814446
Ensembl:ENSGALT00000004315 Uniprot:F1N8B7
Length = 791
Score = 367 (134.2 bits), Expect = 3.5e-34, Sum P(2) = 3.5e-34
Identities = 114/409 (27%), Positives = 201/409 (49%)
Query: 190 TQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYRE--EXXXXXXXXXXXXRQGFYLS 247
+Q F ++ +D +D +R S+ + +A K E + GF LS
Sbjct: 347 SQNRFTVRPNVDPTIDEKKRRLMGLSDFLTEVAQKELETLDNHIPSCCVIYIPLIGFLLS 406
Query: 248 IPHKDIQGKLPSTFIQVVKHGNN-IHCSTLELASLNVRNK---SAAGE--CYIRTE--IC 299
IP + + + ++ G + + S +L + R K S G+ C IR + +
Sbjct: 407 IPR--LPSMVDKSDFEI--EGLDFMFLSEDKLHYRSARTKELDSLLGDLHCEIRDQETLI 462
Query: 300 LEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L I E V D+++ A + + + Y RP FT+ I G
Sbjct: 463 MHQLQTKILERSQVLNNVIEYTAHLDVLL---ALAVMARE-NSYCRPRFTQRHGFHIKDG 518
Query: 360 RHPILESIHNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E F+ N + EA + I+TGPN SGKS YL+QV LI+ +A IG YVPA
Sbjct: 519 RHPLMELCAKTFVANPVNSGEATRRIKIITGPNSSGKSIYLKQVGLIIFMALIGSYVPAA 578
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +D I+TR+ T +++ STFM ++ + A + N +ERSL+++DE G+ T++ D
Sbjct: 579 EAEIGAIDGIYTRIHTRESVSVGLSTFMIDLNQVAKAVNNATERSLVLIDEFGKGTNTLD 638
Query: 479 GFAIAWSCCEHLLS--LKAYTIFAS-HMENLSELATIYPNVKILHFYVVIRN---NRLDF 532
G A+ + ++ ++ + +F S + +L +L + P+ +L + + + + L F
Sbjct: 639 GLALLAAVLKYWINQGTQCPQVFVSTNFHSLMQLELL-PDTPLLEYLAMETHQDGDELVF 697
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-KEVKRME 580
+Q+K G V H +A +AG+P+ +IE ++ I K +KR++
Sbjct: 698 FYQIKQGVSTVSH-AANIAALAGMPAKIIERGVEVSELIRNGKAIKRID 745
Score = 75 (31.5 bits), Expect = 3.5e-34, Sum P(2) = 3.5e-34
Identities = 29/113 (25%), Positives = 52/113 (46%)
Query: 1 MNIDATSVRNLEIIEP-LHSALWGTSNKKR---SLFHMLKTTKTIGGTRLLRANLLQPLK 56
+NID + L+I + +H +++ S+ + SL+ +L + G +LLR L +P +
Sbjct: 178 VNIDQDTYCVLQIFKSDIHPSVYKLSSGLKEGFSLYGILNRCRCKWGEKLLRLWLTRPTR 237
Query: 57 DIETINTRLDCLDE--LMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVT 107
++ +N RLD + L N + L LR K +L KV+
Sbjct: 238 NLTELNKRLDVIHFFLLAQNHETVLTLQDCLRNI-KNVPLILKRMTLSHTKVS 289
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 363 (132.8 bits), Expect = 4.6e-34, Sum P(2) = 4.6e-34
Identities = 82/240 (34%), Positives = 133/240 (55%)
Query: 351 NGPLAIDGGRHPILE---SIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIV 406
NG L RHP + DFIPN+I + E + ++TG N +GKST L+ C+ V
Sbjct: 940 NGFLKFKSLRHPCFNLGATTAKDFIPNDIELGKEQPRLGLLTGANAAGKSTILRMACIAV 999
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
I+AQ+GCYVP + + +DRI TR+G DN+ STF E+ ET ++ + RSL+V
Sbjct: 1000 IMAQMGCYVPCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLV 1059
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
+DELGR SSSDGFAIA S H+ + +++ FA+H L+ +P V+ L +++
Sbjct: 1060 VDELGRGGSSSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILV 1119
Query: 526 --RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI--TKKEVKRMEI 581
+ F +++ +G +G+ +A + G+ +I+ A+ + T + VK ++
Sbjct: 1120 DEATRNVTFLYKMLEGQSE-GSFGMHVASMCGISKEIIDNAQIAADNLEHTSRLVKERDL 1178
Score = 86 (35.3 bits), Expect = 4.6e-34, Sum P(2) = 4.6e-34
Identities = 34/127 (26%), Positives = 61/127 (48%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +++NLEI ++ G+ K +LF + T G R+++ L+ PL
Sbjct: 614 MVLDGITLQNLEIFS---NSFDGSD--KGTLFKLFNRAITPMGKRMMKKWLMHPLLRKND 668
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I +RLD +D L+ + L L K P + +R+L ++ S+ + V + +K
Sbjct: 669 IESRLDSVDSLLQDITLREQLEITFSKLP-DLERMLA-------RIHSRTIKVKDFEKVI 720
Query: 121 TLISSII 127
T +II
Sbjct: 721 TAFETII 727
Score = 45 (20.9 bits), Expect = 9.0e-30, Sum P(2) = 9.0e-30
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 55 LKDIETINTRLDCLDEL---MSNEQLFFGLSQFLRKFPK 90
+KD E + T + + EL + N L +S+++ FP+
Sbjct: 713 VKDFEKVITAFETIIELQDSLKNNDLKGDVSKYISSFPE 751
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 356 (130.4 bits), Expect = 4.6e-34, Sum P(2) = 4.6e-34
Identities = 121/440 (27%), Positives = 191/440 (43%)
Query: 188 ARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLS 247
AR K G D D A + +++ K R R + L
Sbjct: 921 ARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLE 980
Query: 248 IPHKDIQGKLPSTF-IQVVKHG-NNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVD 305
IP LP + ++ K G T+E N+ N + ++ C+ L
Sbjct: 981 IPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKD--CMRRLFY 1038
Query: 306 AIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFT--ENGP--LAIDGGRH 361
++ D+++ A+ S RP E+ P L + G RH
Sbjct: 1039 NFDKNYKDWQSAVECIAVLDVLL-CLAN-YSRGGDGPMCRPVILLPEDTPPFLELKGSRH 1096
Query: 362 PILESIH--NDFIPNNIFIS----EAAN----MVIVTGPNMSGKSTYLQQVCLIVILAQI 411
P + +DFIPN+I I E N V+VTGPNM GKST ++Q L+ ++AQ+
Sbjct: 1097 PCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQM 1156
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
GCYVPA + +DR+FTR+G D + S STF E+ ETA ++ + + SL+++DELG
Sbjct: 1157 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELG 1216
Query: 472 RATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R T++ DG AIA + + L ++K T+F++H +L E + V++ H ++ N
Sbjct: 1217 RGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 1276
Query: 531 D-----FKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITK--KEVKRMEIN 582
D F K P YG A +A LP VI+ K + ++
Sbjct: 1277 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
Query: 583 CLQYKQIQMLYHAAQRLICL 602
CL ++ + A +L+ L
Sbjct: 1337 CLASERSTVDAEAVHKLLTL 1356
Score = 95 (38.5 bits), Expect = 4.6e-34, Sum P(2) = 4.6e-34
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M +DA ++ NLEI L GT+ +L + T T G RLL+ L PL +
Sbjct: 733 MVLDAVTLNNLEIF------LNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHY 786
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
IN RLD +++LM + + L+K P + +R+L
Sbjct: 787 AINDRLDAIEDLMVVPDKISEVVELLKKLP-DLERLL 822
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 355 (130.0 bits), Expect = 4.8e-34, Sum P(2) = 4.8e-34
Identities = 87/226 (38%), Positives = 129/226 (57%)
Query: 354 LAIDGGRHPILESIH--NDFIPNNIFI-----SEA---ANMVIVTGPNMSGKSTYLQQVC 403
L + G RHP + +DFIPN+I I +EA A V+VTGPNM GKST ++Q
Sbjct: 1090 LELKGSRHPCITKTFFGDDFIPNDILIGCEEDAEADGKAYCVLVTGPNMGGKSTLIRQAG 1149
Query: 404 LIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERS 463
L+ ++AQ+GCYVPA + VDR+FTR+G D + S STF E+ ETA ++++ + S
Sbjct: 1150 LLAVMAQMGCYVPAELCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHS 1209
Query: 464 LIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFY 522
L+++DELGR T++ DG AIA + + L ++K T+F++H +L E + V++ H
Sbjct: 1210 LVLVDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSKNVCVRLGHMA 1269
Query: 523 VVIRNNRLD-----FKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIE 562
++ N D F K P YG A +A LP VI+
Sbjct: 1270 CMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQ 1315
Score = 96 (38.9 bits), Expect = 4.8e-34, Sum P(2) = 4.8e-34
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M +DA ++ NLEI L GT+ +L L T T G RLL+ L PL
Sbjct: 733 MVLDAVTLSNLEIF------LNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSPS 786
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
I+ RLD +++LM+ ++ L+K P + +R+L
Sbjct: 787 AISDRLDAIEDLMAVPDKVAEVADLLKKLP-DLERLL 822
>ZFIN|ZDB-GENE-060526-307 [details] [associations]
symbol:msh3 "mutS homolog 3 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-060526-307 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GeneTree:ENSGT00550000074949
EMBL:CR381619 IPI:IPI00805026 Ensembl:ENSDART00000092285
Uniprot:F1QCN5
Length = 950
Score = 333 (122.3 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
Identities = 63/150 (42%), Positives = 99/150 (66%)
Query: 341 DRYTRPH-FTENGPLAIDGGRHPILESIHND---FIPNNIFIS-EAANMVIVTGPNMSGK 395
+ Y RP E + I G+HP++ S+ D ++PN+ + + +I+TGPNM GK
Sbjct: 799 NNYCRPEVLEEKSQILITAGKHPVITSLMGDQDQYVPNDTHLQGDGKRAMIITGPNMGGK 858
Query: 396 STYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFV 455
S+Y++QV L+ I+AQ+G +VPA +++ +VD I+ RMG DN+ STFM E+ ET+ V
Sbjct: 859 SSYIRQVALVTIMAQLGSFVPAREASVGIVDGIYVRMGASDNISRGRSTFMEELLETSDV 918
Query: 456 MQNVSERSLIVMDELGRATSSSDGFAIAWS 485
+ + RSL+++DELGR TS+ DG AIA++
Sbjct: 919 LACATSRSLVILDELGRGTSTHDGIAIAYA 948
Score = 110 (43.8 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
Identities = 33/103 (32%), Positives = 53/103 (51%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M + A +++NLEI+ T + K SL +L T+T+ G RLLR + QPLK +
Sbjct: 494 MLLSAATMKNLEIL-----CNQTTGSVKGSLLWVLDHTQTLFGKRLLRKWVSQPLKSVID 548
Query: 61 INTRLDCLDELMSNEQLFF-GLSQFLRKFPKETDRVLCHFCFK 102
I R + + E++S+E + L + P + +R LC K
Sbjct: 549 IQARQEAVAEILSSESSVLPSIQSLLTRLP-DLERGLCSIYHK 590
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 339 (124.4 bits), Expect = 8.5e-33, Sum P(2) = 8.5e-33
Identities = 88/271 (32%), Positives = 142/271 (52%)
Query: 341 DRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQ 400
+ Y RP TE+ L I GRH + E + F+PN+ I + + I+TGPN SGKS Y++
Sbjct: 524 NNYVRPILTEDSILEIQNGRHALQEMTVDTFVPNDTKIRSSGRINIITGPNYSGKSIYIK 583
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV L+V LA IG +VPA + + + DRIF MG+ ++ S STFM ++ + ++++ +
Sbjct: 584 QVALVVFLAHIGSFVPADSAIVGLTDRIFCAMGS-KSMTSEQSTFMIDLHQVGTMLRHAT 642
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEH----------LLSLKAYTIFASHMENLSELA 510
RSL ++DE G+ T + DG + H LLS IF SE
Sbjct: 643 SRSLCLLDEFGKGTLTEDGIGLLGGTISHFTDYDCPPKVLLSTHLTQIFTESYLPQSEHI 702
Query: 511 TIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSR 570
Y + +L+ N + F ++L G + + +GL A++AG+PS V++ A ++
Sbjct: 703 KCY-TMSVLNPDEQTDNEDVIFLYRLVPG-QALLSFGLHCAQLAGVPSEVVQRAVTVLGD 760
Query: 571 I-TKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
I +K+ ++RM L K Q A +L+
Sbjct: 761 IHSKRPIRRMVWEKLAAKD-QQYQDAVTKLL 790
Score = 94 (38.1 bits), Expect = 8.5e-33, Sum P(2) = 8.5e-33
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 1 MNIDATSVRNLEIIE-PLHSALWGTSNKKR--SLFHMLKTTKTIGGTRLLRANLLQPLKD 57
+ +DAT+ L+I + H + G K S+F ML T G LLR L+P+ D
Sbjct: 187 LKLDATAHEALQIFQVDKHPSYMGIGRAKEGFSVFGMLNKCVTPMGKHLLRTWFLRPIID 246
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLR 86
I+ IN RL+ + + E + L L+
Sbjct: 247 IDVINNRLNTISFFLCCEDVMSALRGTLK 275
Score = 52 (23.4 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 28/114 (24%), Positives = 48/114 (42%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNID N I E L S+ + + + K G L++ L + L ++
Sbjct: 331 MNIDLVGKANSSITEELDYV----SDLVVGVIDVQRG-KEKGYDTLVKDGLCEELDELRM 385
Query: 61 INTRL-DCLDELMSNEQLFFGLSQFLRKFPK--ETDRVLCHFCFKPKKVTSKVL 111
+ L D L+++ +NE F S RK P ++ CF +K++ +L
Sbjct: 386 VYEELPDFLEQVSANEIASFPFSFECRKAPLIVYVHQIGYLMCFFDEKISDALL 439
Score = 44 (20.5 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 15 EPLHSALWGTSNKKRSLFHMLK 36
E + SAL GT R + HMLK
Sbjct: 264 EDVMSALRGTLKSVRDIPHMLK 285
>RGD|1563954 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0019237 "centromeric DNA binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0032302 "MutSbeta complex"
evidence=ISO] [GO:0043570 "maintenance of DNA repeat elements"
evidence=ISO] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] [GO:0051096 "positive regulation of
helicase activity" evidence=ISO] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0032357 "oxidized
purine DNA binding" evidence=ISO] [GO:0003697 "single-stranded DNA
binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0032139 "dinucleotide insertion or deletion
binding" evidence=ISO] [GO:0032142 "single guanine insertion
binding" evidence=ISO] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=ISO] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000710
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOGENOM:HOG000029776
GO:GO:0016447 IPI:IPI00196502 UniGene:Rn.162551 EMBL:BC091283
ProteinModelPortal:Q5BJY1 STRING:Q5BJY1 UCSC:RGD:1563954
HOVERGEN:HBG071048 InParanoid:Q5BJY1 ArrayExpress:Q5BJY1
Genevestigator:Q5BJY1 Uniprot:Q5BJY1
Length = 265
Score = 362 (132.5 bits), Expect = 9.7e-33, P = 9.7e-33
Identities = 82/203 (40%), Positives = 126/203 (62%)
Query: 378 ISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDN 437
+S++ ++I+TGPNM GKS+Y++QV L+VI+AQIG YVPA +TI +VD IFTR G DN
Sbjct: 3 LSDSERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGAADN 62
Query: 438 LESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAY 496
+ STFM E+ +TA ++Q ++RSL+++DELGR TS+ DG AIA++ E+ + +K+
Sbjct: 63 IYKGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL 122
Query: 497 TIFASHMENLSELATIYPN-VKILH--FYVVIRNNRLD------------FKFQLKDGPR 541
T+F +H + EL YP V H F V ++ D F +Q+ G
Sbjct: 123 TLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIA 182
Query: 542 HVPHYGLLLAEVAGLPSTVIETA 564
YGL +A++A +P +++ A
Sbjct: 183 -ARSYGLNVAKLADVPREILQKA 204
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 297 (109.6 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 59/126 (46%), Positives = 88/126 (69%)
Query: 386 IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTF 445
++TGPNM GKS+Y + V L+V+LAQIG +VPA ++ + D IFTRMG DNL STF
Sbjct: 879 LITGPNMGGKSSYTRAVALLVLLAQIGSFVPATSMSLTLSDAIFTRMGARDNLFKGESTF 938
Query: 446 MTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHME 504
M E+ ETA +++ + RSL+V+DELGR TS+ DG AIA + E+++ + +F +H +
Sbjct: 939 MVEVSETAAILRQATPRSLVVLDELGRGTSTHDGRAIAGAVLEYVVRDVGCLMLFVTHYQ 998
Query: 505 NLSELA 510
+L+ +A
Sbjct: 999 DLAGVA 1004
Score = 83 (34.3 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 39/170 (22%), Positives = 73/170 (42%)
Query: 244 FYLSIPHKDIQGKLPSTFIQV--VKHGNNIHCST-LEL-ASLNVRNKSAAGECYIRTEIC 299
+ + +P+ D++ ++P+++ ++ K + H T L L A + +S A C +
Sbjct: 720 YLIEVPNTDLK-RVPASWAKISGTKKVSRFHTPTVLRLIAERDQHKESLASAC----DQA 774
Query: 300 LEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENG-P--LAI 356
L+ I + D +++ T++ P YT+P F + P L+I
Sbjct: 775 FSDLLSQIAGEYQPLRDAVSSLSTLDCLLS--LSTVAALP--GYTKPTFLPSSHPSFLSI 830
Query: 357 DGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNM---SGKSTYLQQV 402
GRHPI E + N +IP + + ++ PN SGK Q +
Sbjct: 831 TEGRHPIAEHLLPNGYIPFTMSLGTLSSSASSPDPNPTSPSGKPALAQLI 880
Score = 79 (32.9 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M I+ T++ +LE+ +A ++K SL L T T G RLLR + +PL D +
Sbjct: 500 MLINGTTLESLEVYR---NAT--DHSEKGSLLWALDKTHTRFGQRLLRKWIGRPLLDQQR 554
Query: 61 INTRLDCLDELMSNE 75
+ R+ ++EL++N+
Sbjct: 555 LEERVSAVEELLNNQ 569
Score = 65 (27.9 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
+ F + L G H YGL +A +A +P V+E A +S + +KEV+ I
Sbjct: 1062 ITFLYDLAPGVAH-RSYGLNVARLARIPRKVLEVAARKSSEL-EKEVRAKRI 1111
Score = 41 (19.5 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 53 QPLKD-IETINTRLDCL 68
QPL+D + +++T LDCL
Sbjct: 787 QPLRDAVSSLST-LDCL 802
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 248 (92.4 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 66/194 (34%), Positives = 105/194 (54%)
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
Q LI+ L Q GCYVPA +VDRIFTR+G D L STF EM+E +
Sbjct: 933 QNFKLILQLKQ-GCYVPAEQCEFSLVDRIFTRIGAGDKLIEGKSTFYIEMEEVKNSIMYG 991
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKI 518
+ S+ + DELGR TS+ DG AIA+ ++ + +++ IFA+H L Y +
Sbjct: 992 TYNSIAIFDELGRGTSTFDGVAIAFGILKYFIEKIQSRCIFATHFFLLINELRFYKEISF 1051
Query: 519 LH--FYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
H +Y ++ +L FK++LK G +G+ LA++ G+ +V+ A+ KK++
Sbjct: 1052 YHMEYYYDNKSKKLIFKYKLKQGNAE-SSFGIDLAKIVGIEQSVLNLAQ-------KKQL 1103
Query: 577 KRMEINCLQYKQIQ 590
+ E N L+Y +++
Sbjct: 1104 E-FE-NSLEYAEVE 1115
Score = 124 (48.7 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 359 GRHPILESIHNDFIPNNIFISEAA------NMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
GR+P L + +PN+I + A N++I+TGPNM GKST L+ CL ILAQIG
Sbjct: 867 GRNPNLIQLDLKQVPNDIILGNIAGMNAQPNIMILTGPNMGGKSTTLRLFCLSAILAQIG 926
Query: 413 CY 414
Y
Sbjct: 927 IY 928
Score = 112 (44.5 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 29/92 (31%), Positives = 53/92 (57%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGT----SNKKRSLFHMLKTTKTIGGTRLLRANLLQPLK 56
M +D+ ++++LEI E +AL T KK +L + L TKT G R+L+ + PL
Sbjct: 504 MILDSQALQHLEIFENSQTALTTTFQQVDQKKGTLLNYLDYTKTPYGKRMLKKWVCSPLI 563
Query: 57 DIETINTRLDCLDELMSN----EQLFFGLSQF 84
DI IN R D ++++ +N ++ +G++++
Sbjct: 564 DISAINDRYDAIEDIQNNLAMKDKFQYGIARY 595
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 342 (125.4 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 93/261 (35%), Positives = 142/261 (54%)
Query: 327 IVNSFAHTISTKPVDRYTRPHFTENG--P-LAIDGGRHPILE-SIHND------FIPNNI 376
++ S A + P + P F N P L +D G HP L N+ FI N+
Sbjct: 890 VLTSLALFAKSSPFEM-CMPEFDFNATDPYLIVDKGVHPCLALQSRNEVTQTTSFIANST 948
Query: 377 FI--SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGT 434
+ SEAA M++ TGPNM GKST ++Q ++ ILA IG VPA + +DRIFTR+G
Sbjct: 949 TMGASEAAVMLL-TGPNMGGKSTLMRQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGA 1007
Query: 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-L 493
D + STF E+KET +++N ++ SL+++DELGR TS+ DG AIA + + + L
Sbjct: 1008 NDRIMCGESTFFIELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDL 1067
Query: 494 KAYTIFASHMENLSELATIYPNVKILHFYVVI--RNNR------LDFKFQLKDG--PRHV 543
T F++H ++ + T +PNV++ H V+ NN + F ++L+ G P+
Sbjct: 1068 ACRTFFSTHYHSICDSFTNHPNVRLAHMKCVVDKENNEDPTMEDVTFLYELESGICPKS- 1126
Query: 544 PHYGLLLAEVAGLPSTVIETA 564
YG A++AG+ V+ A
Sbjct: 1127 --YGFYAAKLAGIDHQVVRNA 1145
Score = 88 (36.0 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 36/133 (27%), Positives = 64/133 (48%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D T++ NL I+ G + SL++++ T G RLLR+ LLQP D + +
Sbjct: 573 LDGTALENLNIVPN------GRDSHLTSLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLE 626
Query: 63 TRLDCLDELMSNEQLFF--GLSQFLRKFPKETDRVL--CHFC---FKPKK-VTSKVLDVD 114
R + L+S + F + L+K P + DR+L H ++ +K S+ + D
Sbjct: 627 QRQKAIKWLVSPDASSFMTTATATLKKIP-DLDRLLQKIHTIGLKYRSEKHPDSRAIFFD 685
Query: 115 NAKKSQTLISSII 127
K +Q I+ ++
Sbjct: 686 TIKTNQKKIAELL 698
Score = 44 (20.5 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 66 DCLDELMSNEQLFFGLSQFLRKFPKETDR 94
+ LDEL+ NEQ + + + F K DR
Sbjct: 725 ELLDELLGNEQEMEEVDENIYFFEKMFDR 753
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 342 (125.4 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 93/261 (35%), Positives = 142/261 (54%)
Query: 327 IVNSFAHTISTKPVDRYTRPHFTENG--P-LAIDGGRHPILE-SIHND------FIPNNI 376
++ S A + P + P F N P L +D G HP L N+ FI N+
Sbjct: 890 VLTSLALFAKSSPFEM-CMPEFDFNATDPYLIVDKGVHPCLALQSRNEVTQTTSFIANST 948
Query: 377 FI--SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGT 434
+ SEAA M++ TGPNM GKST ++Q ++ ILA IG VPA + +DRIFTR+G
Sbjct: 949 TMGASEAAVMLL-TGPNMGGKSTLMRQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGA 1007
Query: 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-L 493
D + STF E+KET +++N ++ SL+++DELGR TS+ DG AIA + + + L
Sbjct: 1008 NDRIMCGESTFFIELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDL 1067
Query: 494 KAYTIFASHMENLSELATIYPNVKILHFYVVI--RNNR------LDFKFQLKDG--PRHV 543
T F++H ++ + T +PNV++ H V+ NN + F ++L+ G P+
Sbjct: 1068 ACRTFFSTHYHSICDSFTNHPNVRLAHMKCVVDKENNEDPTMEDVTFLYELESGICPKS- 1126
Query: 544 PHYGLLLAEVAGLPSTVIETA 564
YG A++AG+ V+ A
Sbjct: 1127 --YGFYAAKLAGIDHQVVRNA 1145
Score = 88 (36.0 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 36/133 (27%), Positives = 64/133 (48%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D T++ NL I+ G + SL++++ T G RLLR+ LLQP D + +
Sbjct: 573 LDGTALENLNIVPN------GRDSHLTSLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLE 626
Query: 63 TRLDCLDELMSNEQLFF--GLSQFLRKFPKETDRVL--CHFC---FKPKK-VTSKVLDVD 114
R + L+S + F + L+K P + DR+L H ++ +K S+ + D
Sbjct: 627 QRQKAIKWLVSPDASSFMTTATATLKKIP-DLDRLLQKIHTIGLKYRSEKHPDSRAIFFD 685
Query: 115 NAKKSQTLISSII 127
K +Q I+ ++
Sbjct: 686 TIKTNQKKIAELL 698
Score = 44 (20.5 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 66 DCLDELMSNEQLFFGLSQFLRKFPKETDR 94
+ LDEL+ NEQ + + + F K DR
Sbjct: 725 ELLDELLGNEQEMEEVDENIYFFEKMFDR 753
>UNIPROTKB|F1RF09 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:CU927965
EMBL:CU928503 Ensembl:ENSSSCT00000015430 Uniprot:F1RF09
Length = 1126
Score = 287 (106.1 bits), Expect = 9.7e-31, Sum P(3) = 9.7e-31
Identities = 74/246 (30%), Positives = 131/246 (53%)
Query: 343 YTRPHFTENGPLAIDGGRHPILESI---HNDFIPNNIFISEAANM-VIVTGPNMSGKSTY 398
Y RP E + I GRHP+++ + + ++PN+ +SE + + +++ GP+ + +
Sbjct: 834 YCRPTLQEERKIVIKNGRHPVIDVLLGEQDQYVPNSTDLSEWSELSLVLVGPSRGIRGNF 893
Query: 399 LQQVCLIV-ILAQIGCYVP-AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVM 456
+ + LI ILA + +V A S + V+D F RMG DN+ STFM E+ +TA ++
Sbjct: 894 FKIIRLINHILALMALFVILAEESWLFVLDFFFIRMGAADNIYKGRSTFMEELTDTAEII 953
Query: 457 QNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPN 515
+ + +SL+++DELGR TS+ DG AIA++ EH + +K+ T+F +H + EL Y
Sbjct: 954 RKATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYSQ 1013
Query: 516 -VKILHFYVVIRNNR--------------LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTV 560
V H ++ + + F +Q+ G YGL +A++A +P +
Sbjct: 1014 QVGNYHMGFLVNEDESKQDPGEEDKVPDFVTFLYQITRGSA-ARSYGLNVAKLADVPGEI 1072
Query: 561 IETARS 566
++ A S
Sbjct: 1073 LKKAAS 1078
Score = 141 (54.7 bits), Expect = 9.7e-31, Sum P(3) = 9.7e-31
Identities = 41/104 (39%), Positives = 57/104 (54%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNK-KRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M I+ T++RNLEI++ T K K SLF +L TKT G R L+ + QPL +
Sbjct: 523 MTINGTTLRNLEILQNQ------TDMKTKGSLFWVLDHTKTSFGRRKLKKWVTQPLLKLR 576
Query: 60 TINTRLDCLDELMSNEQLFFG-LSQFLRKFPKETDRVLCHFCFK 102
IN RLD + E++ +E FG + LRK P + +R LC K
Sbjct: 577 EINARLDAVSEVVHSESSVFGQIESHLRKLP-DIERGLCSIYHK 619
Score = 39 (18.8 bits), Expect = 9.7e-31, Sum P(3) = 9.7e-31
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 336 STKPVDRYTRPHFTEN 351
STK V R+ P EN
Sbjct: 761 STKAVSRFHSPFIVEN 776
>UNIPROTKB|F1LXQ9 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 IPI:IPI00950406
Ensembl:ENSRNOT00000067613 ArrayExpress:F1LXQ9 Uniprot:F1LXQ9
Length = 266
Score = 342 (125.4 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 66/138 (47%), Positives = 98/138 (71%)
Query: 380 EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRM--GTVDN 437
++ ++I+TGPNM GKS+Y++QV L+VI+AQIG YVPA +TI +VD IFTR G DN
Sbjct: 4 DSERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRQRRGAADN 63
Query: 438 LESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAY 496
+ STFM E+ +TA ++Q ++RSL+++DELGR TS+ DG AIA++ E+ + +K+
Sbjct: 64 IYKGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL 123
Query: 497 TIFASHMENLSELATIYP 514
T+F +H + EL YP
Sbjct: 124 TLFVTHYPPVCELEKRYP 141
Score = 193 (73.0 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 51/150 (34%), Positives = 82/150 (54%)
Query: 431 RMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHL 490
R G DN+ STFM E+ +TA ++Q ++RSL+++DELGR TS+ DG AIA++ E+
Sbjct: 57 RRGAADNIYKGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYF 116
Query: 491 L-SLKAYTIFASHMENLSELATIYPN-VKILH--FYVVIRNNRLD------------FKF 534
+ +K+ T+F +H + EL YP V H F V ++ D F +
Sbjct: 117 IRDVKSLTLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLY 176
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETA 564
Q+ G YGL +A++A +P +++ A
Sbjct: 177 QITRGIA-ARSYGLNVAKLADVPREILQKA 205
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 349 (127.9 bits), Expect = 3.2e-30, Sum P(3) = 3.2e-30
Identities = 79/234 (33%), Positives = 137/234 (58%)
Query: 354 LAIDGGRHPILESIHNDFIPNNIFISEA--ANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
+ ++ G HP + + +IPN + + A A + ++TGPNM GKST +++V L+VI+AQI
Sbjct: 923 IQLEEGYHPCANA--STYIPNGLELGTASEAPLSLLTGPNMGGKSTLMREVGLLVIMAQI 980
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G ++PA + +VDRIFTR+G D++ + STF+ E+ ET+ ++++ + SL+++DELG
Sbjct: 981 GAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELG 1040
Query: 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-NRL 530
R T++ DG AIA S L +LK T+F++H NL + + + H ++ N +
Sbjct: 1041 RGTATYDGTAIAASVVNFLANLKCRTLFSTHYHNLIDFFHNDKRITLGHMACMVENEDNA 1100
Query: 531 D-----FKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
D F K P YG A++AG+P +I+ A ++ ++ ++R
Sbjct: 1101 DPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAIALQR 1154
Score = 67 (28.6 bits), Expect = 3.2e-30, Sum P(3) = 3.2e-30
Identities = 27/72 (37%), Positives = 34/72 (47%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DAT++ NL II HS L +L H TK G RLL L P D+
Sbjct: 579 MVLDATTLSNLRIIGEEHSLL-------STLDHCC--TKF--GKRLLHHWLCAPSCDVSV 627
Query: 61 INTRLDCLDELM 72
I R D + EL+
Sbjct: 628 IKERQDAIGELI 639
Score = 39 (18.8 bits), Expect = 3.2e-30, Sum P(3) = 3.2e-30
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 563 TARSITSRITKKEVKRMEINCLQ--YKQIQM 591
TA+ + + ++ K+ +IN L+ KQ++M
Sbjct: 1157 TAKIVAATAGNEDTKKEKINALKDLLKQLKM 1187
>RGD|1303008 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=ISO;IBA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0007127 "meiosis I"
evidence=ISO] [GO:0007129 "synapsis" evidence=ISO] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0007292
"female gamete generation" evidence=IEA;ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0008150
"biological_process" evidence=ND] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IRD] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 RGD:1303008 GO:GO:0005524 EMBL:BX883045
GO:GO:0006298 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 CTD:4439 HOVERGEN:HBG001449
OrthoDB:EOG4WSW8Z HOGENOM:HOG000006649 EMBL:BC083904
IPI:IPI00421996 RefSeq:NP_997701.2 UniGene:Rn.44043
ProteinModelPortal:Q6MG62 STRING:Q6MG62 PRIDE:Q6MG62
Ensembl:ENSRNOT00000060762 GeneID:294252 KEGG:rno:294252
UCSC:RGD:1303008 InParanoid:Q6MG62 NextBio:637830
Genevestigator:Q6MG62 GermOnline:ENSRNOG00000000857 Uniprot:Q6MG62
Length = 831
Score = 340 (124.7 bits), Expect = 5.0e-30, Sum P(2) = 5.0e-30
Identities = 86/246 (34%), Positives = 134/246 (54%)
Query: 343 YTRPHFTE--NGPLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYL 399
Y+RPH++ G + I GRHP++E F+PN+ + + ++TGPN SGKS YL
Sbjct: 541 YSRPHYSPCIQG-VRIKNGRHPLMELCARTFVPNSTDCGGDQGRVKVITGPNSSGKSIYL 599
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+QV LI +A +G +VPA + I V+D IFTR+ + +++ STFM ++ + A + N
Sbjct: 600 KQVGLITFMALVGSFVPAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNA 659
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL--KAYTIF-ASHMENLSELATIY--P 514
+E SL+++DE G+ T+S DG A+ + H L+L IF A++ +L +L + P
Sbjct: 660 TEHSLVLIDEFGKGTNSVDGLALLTAVLRHWLALGPSCPHIFVATNFLSLVQLQLLPQGP 719
Query: 515 NVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK- 573
V+ L N L F +QL G H A+ AGLP +I + ++ I
Sbjct: 720 LVQYLTMETCEDGNDLVFFYQLCHGVASASHASYTAAQ-AGLPDPLIARGKEVSDSIRSG 778
Query: 574 KEVKRM 579
K VK M
Sbjct: 779 KPVKPM 784
Score = 67 (28.6 bits), Expect = 5.0e-30, Sum P(2) = 5.0e-30
Identities = 19/81 (23%), Positives = 43/81 (53%)
Query: 1 MNIDATSVRNLEIIEP-LHSALWGTSNKKR---SLFHMLKTTKTIGGTRLLRANLLQPLK 56
++ID + L+I + H +++ ++ + SLF +L + G +LLR +P +
Sbjct: 217 VSIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCRWGQKLLRLWFTRPTR 276
Query: 57 DIETINTRLDCLDELMSNEQL 77
++ +N+RLD ++ + + L
Sbjct: 277 ELRELNSRLDVIEFFLMPQNL 297
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 308 (113.5 bits), Expect = 7.5e-30, Sum P(2) = 7.5e-30
Identities = 84/280 (30%), Positives = 140/280 (50%)
Query: 341 DRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQ 400
+ Y RP T L I GRH + E + FIPN+ I++ + I+TGPN SGKS Y++
Sbjct: 521 NNYVRPVLTVESLLDIRNGRHVLQEMAVDTFIPNDTEINDNGRIHIITGPNYSGKSIYVK 580
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LIV L+ IG +VPA +T+ + DRIF MG+ + + STFM ++ + +++ +
Sbjct: 581 QVALIVFLSHIGSFVPADAATVGLTDRIFCAMGS-KFMTAEQSTFMIDLHQVGMMLRQAT 639
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKA--YTIFASHMENLSELATIYPNVKI 518
RSL ++DE G+ T + DG + H + + +H+ L + + + KI
Sbjct: 640 SRSLCLLDEFGKGTLTEDGIGLLGGTISHFATCAEPPRVVVCTHLTELLNESCLPVSEKI 699
Query: 519 LHFYV--VIRNN-------RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
FY V+R + + F ++L G + + YGL A +AG+P V++ A +
Sbjct: 700 -KFYTMSVLRPDTESANMEEIVFLYRLIPG-QTLLSYGLHCALLAGVPEEVVKRAAIVLD 757
Query: 570 RI-TKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQD 608
+ V ++ ++ + Q Q A + L S D
Sbjct: 758 AFESNNNVDKLSLDKIS-SQDQAFKDAVDKFAELDISKGD 796
Score = 100 (40.3 bits), Expect = 7.5e-30, Sum P(2) = 7.5e-30
Identities = 28/103 (27%), Positives = 54/103 (52%)
Query: 1 MNIDATSVRNLEIIE----PLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLK 56
+ +DA + L+I + P H + G + + S+F M+ T G RLLR+ ++P+
Sbjct: 183 LKLDAAAHEALQIFQTDKHPSHMGI-GRAKEGFSVFGMMNKCATPMGRRLLRSWFMRPIL 241
Query: 57 DIETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHF 99
D+E ++ RL+ + +S+ +L L + L+ K+ +L F
Sbjct: 242 DLEVLDRRLNAISFFISSVELMASLRETLKSV-KDISHLLKKF 283
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 359 (131.4 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 115/397 (28%), Positives = 178/397 (44%)
Query: 188 ARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLS 247
AR K G D D A + +++ K R R + L
Sbjct: 849 ARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRNRYQLE 908
Query: 248 IPHKDIQGKLPSTF-IQVVKHG-NNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVD 305
IP I LP + ++ K G T+E N+ N + ++ C+ L
Sbjct: 909 IPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKD--CMRRLFY 966
Query: 306 AIREDVSVXXXXXXXXXXXDMIVNSFAHTI-STKPVDRYTRPHFTENGPLAID--GGRHP 362
++ D+++ ++ S P+ R E P +D G RHP
Sbjct: 967 NFDKNYKDWQSAVECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTPPFLDLRGSRHP 1026
Query: 363 ILESIH--NDFIPNNIFIS----EAAN----MVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
+ +DFIPN+I I E N V+VTGPNM GKST ++Q L+ ++AQ+G
Sbjct: 1027 CITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMG 1086
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
CYVPA + +DR+FTR+G D + S STF E+ ETA ++ + + SL+++DELGR
Sbjct: 1087 CYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGR 1146
Query: 473 ATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
T++ DG AIA + + L ++K T+F++H +L E + V++ H ++ N D
Sbjct: 1147 GTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECED 1206
Query: 532 -----FKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIE 562
F K P YG A +A LP VI+
Sbjct: 1207 PSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQ 1243
>UNIPROTKB|E1B8D2 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007292
GO:GO:0007129 GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:DAAA02055381 IPI:IPI00710632
Ensembl:ENSBTAT00000026367 Uniprot:E1B8D2
Length = 831
Score = 331 (121.6 bits), Expect = 5.5e-29, Sum P(2) = 5.5e-29
Identities = 83/257 (32%), Positives = 141/257 (54%)
Query: 343 YTRPHFTEN--GPLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYL 399
Y+RP ++ G + I GRHP++E F+PN+ +A + ++TGPN SGKS YL
Sbjct: 541 YSRPRYSPRLLG-VRIQNGRHPLMELCARTFVPNSAECGGDAGRVKVITGPNSSGKSIYL 599
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N
Sbjct: 600 KQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNA 659
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKA---YTIFASHMENLSELATIY--P 514
+ERSL+++DE G+ T++ DG A+ + H L+L + A++ +L +L + P
Sbjct: 660 TERSLVLVDEFGKGTNTVDGLALLAAVIRHWLALGPTCPHVFVATNFLSLVQLQLLPRGP 719
Query: 515 NVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK- 573
V+ L + L F +Q+ +G H A+ AGLP +I + ++ I
Sbjct: 720 LVQYLTMETCEDGDDLVFFYQVCEGVARASHASHTAAQ-AGLPEKLIARGKQVSDLIRSG 778
Query: 574 KEVKRMEINCLQYKQIQ 590
K +K ++ L+ KQ++
Sbjct: 779 KPIKPVK-ELLKEKQME 794
Score = 67 (28.6 bits), Expect = 5.5e-29, Sum P(2) = 5.5e-29
Identities = 22/91 (24%), Positives = 47/91 (51%)
Query: 1 MNIDATSVRNLEIIEP-LHSALWGTSNKKR---SLFHMLKTTKTIGGTRLLRANLLQPLK 56
++ID + L+I + H +++ ++ + SLF +L + G +LLR +P +
Sbjct: 217 VSIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCKWGEKLLRLWFTRPTQ 276
Query: 57 DIETINTRLDCLDELMSNEQLFFGLSQFLRK 87
D+ +N+RLD + + + L ++Q L +
Sbjct: 277 DLGELNSRLDVIQFFLLPQNL--DMAQMLHR 305
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 354 (129.7 bits), Expect = 6.5e-29, P = 6.5e-29
Identities = 118/439 (26%), Positives = 192/439 (43%)
Query: 188 ARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLS 247
AR K G D D A + +++ K R R + L
Sbjct: 896 ARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRNRYQLE 955
Query: 248 IPHKDIQGKLPSTF-IQVVKHG-NNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVD 305
IP LP + ++ K G T+E N+ N + ++ C+ L
Sbjct: 956 IPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKD--CMRRLFY 1013
Query: 306 AIREDVSVXXXXXXXXXXXDMIVNSFAHTISTK-PVDRYTRPHFTENGP--LAIDGGRHP 362
++ D+++ ++ P+ R E+ P L + G RHP
Sbjct: 1014 NFDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPGEDTPPFLYLKGSRHP 1073
Query: 363 ILESIH--NDFIPNNIFI--------SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
+ +DFIPN+I I ++ A V+VTGPNM GKST ++Q L+ ++AQ+G
Sbjct: 1074 CITKTFFGDDFIPNDILIGCEEEEEENDKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMG 1133
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
CYVPA + +DR+FTR+G D + S STF E+ ETA ++ + + SL+++DELGR
Sbjct: 1134 CYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGR 1193
Query: 473 ATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
T++ DG AIA + + L ++K T+F++H +L E + V++ H ++ N D
Sbjct: 1194 GTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECED 1253
Query: 532 -----FKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITK--KEVKRMEINC 583
F K P YG A +A LP VI+ K + ++ C
Sbjct: 1254 PSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQSLRLFREVC 1313
Query: 584 LQYKQIQMLYHAAQRLICL 602
L ++ + A +L+ L
Sbjct: 1314 LASERSTVDAEAVHKLLTL 1332
>UNIPROTKB|J9NUN0 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074977 EMBL:AAEX03008217 EMBL:AAEX03008216
Ensembl:ENSCAFT00000043640 Uniprot:J9NUN0
Length = 725
Score = 317 (116.6 bits), Expect = 8.7e-29, Sum P(2) = 8.7e-29
Identities = 82/257 (31%), Positives = 141/257 (54%)
Query: 343 YTRPHFTEN--GPLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYL 399
Y+RP ++ G + I GRHP++E F+PN+ + + ++TGPN SGKS YL
Sbjct: 435 YSRPRYSPQLLG-VRIQNGRHPLMELCARTFVPNSAECGGDRGRVKVITGPNSSGKSIYL 493
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N
Sbjct: 494 KQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNA 553
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYT--IF-ASHMENLSELATIY--P 514
+++SL+++DE G+ T++ DG A+ + H L+L IF A++ +L +L + P
Sbjct: 554 TKQSLVLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCPHIFVATNFLSLVQLQLLPQGP 613
Query: 515 NVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK- 573
V+ L + L F +Q+ DG H A+ AGLP ++ + ++ I
Sbjct: 614 LVQYLTMETCEDGDDLVFFYQVCDGLAKASHASHTAAQ-AGLPDQLLTRGKEVSDLIRSG 672
Query: 574 KEVKRMEINCLQYKQIQ 590
K +K ++ L+ KQ++
Sbjct: 673 KPIKPVK-ELLKEKQME 688
Score = 78 (32.5 bits), Expect = 8.7e-29, Sum P(2) = 8.7e-29
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 1 MNIDATSVRNLEII--EPLHSALWGTSNKKR--SLFHMLKTTKTIGGTRLLRANLLQPLK 56
++ID + L+I EP S S K SLF +L + G +LLR +P +
Sbjct: 111 VSIDQDTYSVLQIFKSEPHPSVYKVASGLKEGLSLFGILNRCRCKWGEKLLRLWFTRPTQ 170
Query: 57 DIETINTRLDCLDELMSNEQLFFGLSQFLRK 87
D+E +N+RLD + + + L ++Q L +
Sbjct: 171 DLEELNSRLDVIQFFLLPQNL--DMAQMLHR 199
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 351 (128.6 bits), Expect = 1.3e-28, P = 1.3e-28
Identities = 121/440 (27%), Positives = 192/440 (43%)
Query: 188 ARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLS 247
AR K G D D A + +++ K R R + L
Sbjct: 839 ARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRNRYQLE 898
Query: 248 IPHKDIQGKLPSTF-IQVVKHG-NNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVD 305
IP I LP + ++ K G T+E N+ N + ++ C+ L
Sbjct: 899 IPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKD--CMRRLFY 956
Query: 306 AIREDVSVXXXXXXXXXXXDMIVNSFAHTI-STKPVDRYTRPHFTENGPLAID--GGRHP 362
++ D+++ ++ S P+ R E P +D G RHP
Sbjct: 957 NFDKNYKDWQSAVECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTPPFLDLRGSRHP 1016
Query: 363 ILESIH--NDFIPNNIFIS----EAAN----MVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
+ +DFIPN+I I E N V+VTGPNM GKST ++Q L+ ++AQ+G
Sbjct: 1017 CITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMG 1076
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL-G 471
CYVPA + +DR+FTR+G D + S STF E+ ETA ++ + + SL+++DEL G
Sbjct: 1077 CYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELVG 1136
Query: 472 RATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R T++ DG AIA + + L ++K T+F++H +L E + V++ H ++ N
Sbjct: 1137 RGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 1196
Query: 531 D-----FKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITK--KEVKRMEIN 582
D F K P YG A +A LP VI+ K + ++
Sbjct: 1197 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQSLRLFREV 1256
Query: 583 CLQYKQIQMLYHAAQRLICL 602
CL ++ + A +L+ L
Sbjct: 1257 CLASERSTVDAEAVPKLLTL 1276
>MGI|MGI:1329021 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0007127 "meiosis I" evidence=IMP] [GO:0007129
"synapsis" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007292 "female gamete generation"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
MGI:MGI:1329021 GO:GO:0005524 GO:GO:0005654 EMBL:AF109905
GO:GO:0006298 Reactome:REACT_120463 GO:GO:0030983 GO:GO:0007292
GO:GO:0007131 Reactome:REACT_27235 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:AF397035 EMBL:AF397036 KO:K08741 GeneTree:ENSGT00550000074977
CTD:4439 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z EMBL:AF146227
EMBL:AF107352 IPI:IPI00323518 RefSeq:NP_001139687.1
RefSeq:NP_038628.2 UniGene:Mm.24192 ProteinModelPortal:Q9QUM7
SMR:Q9QUM7 STRING:Q9QUM7 PhosphoSite:Q9QUM7 PRIDE:Q9QUM7
Ensembl:ENSMUST00000007250 Ensembl:ENSMUST00000097338 GeneID:17687
KEGG:mmu:17687 UCSC:uc008cfc.2 HOGENOM:HOG000006649
InParanoid:Q9QUM7 NextBio:292260 Bgee:Q9QUM7 CleanEx:MM_MSH5
Genevestigator:Q9QUM7 GermOnline:ENSMUSG00000007035 Uniprot:Q9QUM7
Length = 833
Score = 327 (120.2 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 81/244 (33%), Positives = 132/244 (54%)
Query: 343 YTRPHFTE--NGPLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYL 399
Y+RPH++ +G + I GRHP++E F+PN+ + + ++TGPN SGKS YL
Sbjct: 543 YSRPHYSPCIHG-VRIRNGRHPLMELCARTFVPNSTDCGGDQGRVKVITGPNSSGKSIYL 601
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+QV LI +A +G +VPA + I V+D IFTR+ + +++ STFM ++ + A + N
Sbjct: 602 KQVGLITFMALVGSFVPAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNA 661
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKA---YTIFASHMENLSELATIY--P 514
+E SL+++DE G+ T+S DG A+ + H L+L + A++ +L +L + P
Sbjct: 662 TEHSLVLIDEFGKGTNSVDGLALLAAVLRHWLALGPSCPHVFVATNFLSLVQLQLLPQGP 721
Query: 515 NVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK- 573
V+ L L F +QL G H A+ AGLP +I + ++ I
Sbjct: 722 LVQYLTMETCEDGEDLVFFYQLCQGVASASHASHTAAQ-AGLPDPLIARGKEVSDLIRSG 780
Query: 574 KEVK 577
K +K
Sbjct: 781 KPIK 784
Score = 67 (28.6 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 21/91 (23%), Positives = 47/91 (51%)
Query: 1 MNIDATSVRNLEIIEP-LHSALWGTSNKKR---SLFHMLKTTKTIGGTRLLRANLLQPLK 56
++ID + L+I + H +++ ++ + SLF +L + G +LLR +P +
Sbjct: 219 VSIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCKWGQKLLRLWFTRPTR 278
Query: 57 DIETINTRLDCLDELMSNEQLFFGLSQFLRK 87
++ +N+RLD + + + L ++Q L +
Sbjct: 279 ELRELNSRLDVIQFFLMPQNL--DMAQMLHR 307
>UNIPROTKB|F1PBG8 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
OMA:NDLVFFY GeneTree:ENSGT00550000074977 EMBL:AAEX03008217
EMBL:AAEX03008216 Ensembl:ENSCAFT00000000966 Uniprot:F1PBG8
Length = 857
Score = 317 (116.6 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
Identities = 82/257 (31%), Positives = 141/257 (54%)
Query: 343 YTRPHFTEN--GPLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYL 399
Y+RP ++ G + I GRHP++E F+PN+ + + ++TGPN SGKS YL
Sbjct: 567 YSRPRYSPQLLG-VRIQNGRHPLMELCARTFVPNSAECGGDRGRVKVITGPNSSGKSIYL 625
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N
Sbjct: 626 KQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNA 685
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYT--IF-ASHMENLSELATIY--P 514
+++SL+++DE G+ T++ DG A+ + H L+L IF A++ +L +L + P
Sbjct: 686 TKQSLVLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCPHIFVATNFLSLVQLQLLPQGP 745
Query: 515 NVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK- 573
V+ L + L F +Q+ DG H A+ AGLP ++ + ++ I
Sbjct: 746 LVQYLTMETCEDGDDLVFFYQVCDGLAKASHASHTAAQ-AGLPDQLLTRGKEVSDLIRSG 804
Query: 574 KEVKRMEINCLQYKQIQ 590
K +K ++ L+ KQ++
Sbjct: 805 KPIKPVK-ELLKEKQME 820
Score = 78 (32.5 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 1 MNIDATSVRNLEII--EPLHSALWGTSNKKR--SLFHMLKTTKTIGGTRLLRANLLQPLK 56
++ID + L+I EP S S K SLF +L + G +LLR +P +
Sbjct: 243 VSIDQDTYSVLQIFKSEPHPSVYKVASGLKEGLSLFGILNRCRCKWGEKLLRLWFTRPTQ 302
Query: 57 DIETINTRLDCLDELMSNEQLFFGLSQFLRK 87
D+E +N+RLD + + + L ++Q L +
Sbjct: 303 DLEELNSRLDVIQFFLLPQNL--DMAQMLHR 331
>UNIPROTKB|O43196 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IRD] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0051026
"chiasma assembly" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007136 "meiotic prophase II" evidence=TAS]
[GO:0007126 "meiosis" evidence=TAS] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 EMBL:BA000025 EMBL:CH471081 EMBL:AF129756
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 Reactome:REACT_111183
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
EMBL:AL662834 GO:GO:0045143 EMBL:AF134726 EMBL:CR936239
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 EMBL:CR925765
KO:K08741 OMA:NDLVFFY EMBL:AF048986 EMBL:AF048991 EMBL:AF048988
EMBL:AF048989 EMBL:AF048990 EMBL:AF034759 EMBL:AF070071
EMBL:AF070079 EMBL:AF070072 EMBL:AF070073 EMBL:AF070074
EMBL:AF070075 EMBL:AF070076 EMBL:AF070077 EMBL:AF070078
EMBL:BT007200 EMBL:AY943816 EMBL:BC001358 EMBL:BC002498
EMBL:BC041031 IPI:IPI00172593 IPI:IPI00219362 IPI:IPI00297780
IPI:IPI00647584 RefSeq:NP_002432.1 RefSeq:NP_079535.4
RefSeq:NP_751897.1 RefSeq:NP_751898.1 UniGene:Hs.647011
ProteinModelPortal:O43196 SMR:O43196 IntAct:O43196 STRING:O43196
PhosphoSite:O43196 PRIDE:O43196 DNASU:4439 Ensembl:ENST00000375703
Ensembl:ENST00000375740 Ensembl:ENST00000375742
Ensembl:ENST00000375750 Ensembl:ENST00000375755
Ensembl:ENST00000416549 Ensembl:ENST00000419269
Ensembl:ENST00000427735 Ensembl:ENST00000435700
Ensembl:ENST00000436192 Ensembl:ENST00000441395
Ensembl:ENST00000441401 Ensembl:ENST00000448617
Ensembl:ENST00000456839 Ensembl:ENST00000457742
Ensembl:ENST00000497157 Ensembl:ENST00000534153
Ensembl:ENST00000578225 GeneID:4439 KEGG:hsa:4439 UCSC:uc003nwu.2
UCSC:uc003nwv.2 UCSC:uc003nwx.2 CTD:4439 GeneCards:GC06P031707
H-InvDB:HIX0165917 H-InvDB:HIX0166738 H-InvDB:HIX0167237
H-InvDB:HIX0167372 HGNC:HGNC:7328 MIM:603382 neXtProt:NX_O43196
PharmGKB:PA31136 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z
PhylomeDB:O43196 ChiTaRS:MSH5 GenomeRNAi:4439 NextBio:17301
ArrayExpress:O43196 Bgee:O43196 CleanEx:HS_MSH5
Genevestigator:O43196 GermOnline:ENSG00000204410 GO:GO:0007136
Uniprot:O43196
Length = 834
Score = 309 (113.8 bits), Expect = 6.3e-26, Sum P(2) = 6.3e-26
Identities = 80/257 (31%), Positives = 140/257 (54%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 544 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 603
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N +
Sbjct: 604 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNAT 663
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYT---IF-ASHMENLSELATIY--P 514
+SL+++DE G+ T++ DG A+ + H L+ + T IF A++ +L +L + P
Sbjct: 664 AQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA-RGPTCPHIFVATNFLSLVQLQLLPQGP 722
Query: 515 NVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK- 573
V+ L N L F +Q+ +G H A+ AGLP ++ + ++ I
Sbjct: 723 LVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQ-AGLPDKLVARGKEVSDLIRSG 781
Query: 574 KEVKRMEINCLQYKQIQ 590
K +K ++ + L+ Q++
Sbjct: 782 KPIKPVK-DLLKKNQME 797
Score = 62 (26.9 bits), Expect = 6.3e-26, Sum P(2) = 6.3e-26
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 1 MNIDATSVRNLEIIEP-LHSALWGTSNKKR---SLFHMLKTTKTIGGTRLLRANLLQPLK 56
+NID + L+I + H +++ ++ + SLF +L G +LLR +P
Sbjct: 220 VNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTH 279
Query: 57 DIETINTRLDCLDELMSNEQLFFGLSQFLRK 87
D+ +++RLD + + + L ++Q L +
Sbjct: 280 DLGELSSRLDVIQFFLLPQNL--DMAQMLHR 308
>UNIPROTKB|A2BEX4 [details] [associations]
symbol:MSH5-SAPCD1 "MutS protein homolog 5" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX4 Ensembl:ENST00000414514
Ensembl:ENST00000414810 Ensembl:ENST00000437726
Ensembl:ENST00000454820 Ensembl:ENST00000466318
Ensembl:ENST00000495073 HGNC:HGNC:41994 Uniprot:A2BEX4
Length = 496
Score = 309 (113.8 bits), Expect = 5.3e-25, P = 5.3e-25
Identities = 80/257 (31%), Positives = 140/257 (54%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 206 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 265
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N +
Sbjct: 266 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNAT 325
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYT---IF-ASHMENLSELATIY--P 514
+SL+++DE G+ T++ DG A+ + H L+ + T IF A++ +L +L + P
Sbjct: 326 AQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA-RGPTCPHIFVATNFLSLVQLQLLPQGP 384
Query: 515 NVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK- 573
V+ L N L F +Q+ +G H A+ AGLP ++ + ++ I
Sbjct: 385 LVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQ-AGLPDKLVARGKEVSDLIRSG 443
Query: 574 KEVKRMEINCLQYKQIQ 590
K +K ++ + L+ Q++
Sbjct: 444 KPIKPVK-DLLKKNQME 459
>UNIPROTKB|A2ABF0 [details] [associations]
symbol:MSH5 "cDNA FLJ39914 fis, clone SPLEN2018732, highly
similar to MutS protein homolog 5" species:9606 "Homo sapiens"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:BX248244 EMBL:CR759787 GO:GO:0006298
GO:GO:0030983 EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334
EMBL:CR759915 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AK097233
IPI:IPI00798222 SMR:A2ABF0 STRING:A2ABF0 Ensembl:ENST00000395853
Ensembl:ENST00000414412 Ensembl:ENST00000430216
Ensembl:ENST00000436004 Ensembl:ENST00000439816
Ensembl:ENST00000448169 HOGENOM:HOG000231215 Uniprot:A2ABF0
Length = 508
Score = 309 (113.8 bits), Expect = 6.1e-25, P = 6.1e-25
Identities = 80/257 (31%), Positives = 140/257 (54%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 218 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 277
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N +
Sbjct: 278 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNAT 337
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYT---IF-ASHMENLSELATIY--P 514
+SL+++DE G+ T++ DG A+ + H L+ + T IF A++ +L +L + P
Sbjct: 338 AQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA-RGPTCPHIFVATNFLSLVQLQLLPQGP 396
Query: 515 NVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK- 573
V+ L N L F +Q+ +G H A+ AGLP ++ + ++ I
Sbjct: 397 LVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQ-AGLPDKLVARGKEVSDLIRSG 455
Query: 574 KEVKRMEINCLQYKQIQ 590
K +K ++ + L+ Q++
Sbjct: 456 KPIKPVK-DLLKKNQME 471
>UNIPROTKB|B4DZX3 [details] [associations]
symbol:MSH5 "cDNA FLJ54211, highly similar to MutS protein
homolog 5" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:AK303129
IPI:IPI01015677 SMR:B4DZX3 STRING:B4DZX3 Ensembl:ENST00000431848
Ensembl:ENST00000547775 Ensembl:ENST00000549618
Ensembl:ENST00000551879 Uniprot:B4DZX3
Length = 533
Score = 309 (113.8 bits), Expect = 7.9e-25, P = 7.9e-25
Identities = 80/257 (31%), Positives = 140/257 (54%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 243 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 302
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N +
Sbjct: 303 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNAT 362
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYT---IF-ASHMENLSELATIY--P 514
+SL+++DE G+ T++ DG A+ + H L+ + T IF A++ +L +L + P
Sbjct: 363 AQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA-RGPTCPHIFVATNFLSLVQLQLLPQGP 421
Query: 515 NVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK- 573
V+ L N L F +Q+ +G H A+ AGLP ++ + ++ I
Sbjct: 422 LVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQ-AGLPDKLVARGKEVSDLIRSG 480
Query: 574 KEVKRMEINCLQYKQIQ 590
K +K ++ + L+ Q++
Sbjct: 481 KPIKPVK-DLLKKNQME 496
>UNIPROTKB|A2BEX2 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX2 Ensembl:ENST00000426512
Ensembl:ENST00000442688 Uniprot:A2BEX2
Length = 497
Score = 301 (111.0 bits), Expect = 4.5e-24, P = 4.5e-24
Identities = 80/258 (31%), Positives = 141/258 (54%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 206 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 265
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEM-KETAFVMQNV 459
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ ++ A + N
Sbjct: 266 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNA 325
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYT---IF-ASHMENLSELATIY-- 513
+ +SL+++DE G+ T++ DG A+ + H L+ + T IF A++ +L +L +
Sbjct: 326 TAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA-RGPTCPHIFVATNFLSLVQLQLLPQG 384
Query: 514 PNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
P V+ L N L F +Q+ +G H A+ AGLP ++ + ++ I
Sbjct: 385 PLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQ-AGLPDKLVARGKEVSDLIRS 443
Query: 574 -KEVKRMEINCLQYKQIQ 590
K +K ++ + L+ Q++
Sbjct: 444 GKPIKPVK-DLLKKNQME 460
>UNIPROTKB|E9PGY4 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 HGNC:HGNC:7328
HGNC:HGNC:41994 IPI:IPI00790547 SMR:E9PGY4 Ensembl:ENST00000548094
Ensembl:ENST00000549604 Ensembl:ENST00000549746 Uniprot:E9PGY4
Length = 271
Score = 277 (102.6 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 55/152 (36%), Positives = 92/152 (60%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 76 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 135
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N +
Sbjct: 136 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNAT 195
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492
+SL+++DE G+ T++ DG A+ + H L+
Sbjct: 196 AQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA 227
>UNIPROTKB|H0YF11 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 GO:GO:0030983
EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR759915
EMBL:CR925765 EMBL:BX248133 HGNC:HGNC:41994 Ensembl:ENST00000469011
Ensembl:ENST00000476578 Ensembl:ENST00000480622
Ensembl:ENST00000482009 Ensembl:ENST00000492776
Ensembl:ENST00000498473 Uniprot:H0YF11
Length = 264
Score = 277 (102.6 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 55/152 (36%), Positives = 92/152 (60%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 69 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 128
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N +
Sbjct: 129 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNAT 188
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492
+SL+++DE G+ T++ DG A+ + H L+
Sbjct: 189 AQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA 220
>UNIPROTKB|Q9UFG2 [details] [associations]
symbol:DKFZp434C1615 "Putative uncharacterized protein
DKFZp434C1615" species:9606 "Homo sapiens" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 EMBL:BX248244 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HSSP:Q56215 UniGene:Hs.647011
HGNC:HGNC:7328 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AL122094
IPI:IPI00945579 PIR:T34526 STRING:Q9UFG2 Ensembl:ENST00000554793
HOVERGEN:HBG066397 Uniprot:Q9UFG2
Length = 263
Score = 277 (102.6 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 55/152 (36%), Positives = 92/152 (60%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 68 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 127
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N +
Sbjct: 128 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNAT 187
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492
+SL+++DE G+ T++ DG A+ + H L+
Sbjct: 188 AQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA 219
>UNIPROTKB|Q5SSQ8 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL662834 EMBL:CR936239
SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00797508 SMR:Q5SSQ8
Ensembl:ENST00000436559 Ensembl:ENST00000458144 UCSC:uc011iri.2
Uniprot:Q5SSQ8
Length = 821
Score = 283 (104.7 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 69/204 (33%), Positives = 115/204 (56%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 561 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 620
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N +
Sbjct: 621 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNAT 680
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYT---IF-ASHMENLSELATIY--P 514
+SL+++DE G+ T++ DG A+ + H L+ + T IF A++ +L +L + P
Sbjct: 681 AQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA-RGPTCPHIFVATNFLSLVQLQLLPQGP 739
Query: 515 NVKILHFYVVIRNNRLDFKFQLKD 538
V+ L N L F +Q+ D
Sbjct: 740 LVQYLTMETCEDGNDLVFFYQVSD 763
Score = 62 (26.9 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 1 MNIDATSVRNLEIIEP-LHSALWGTSNKKR---SLFHMLKTTKTIGGTRLLRANLLQPLK 56
+NID + L+I + H +++ ++ + SLF +L G +LLR +P
Sbjct: 237 VNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTH 296
Query: 57 DIETINTRLDCLDELMSNEQLFFGLSQFLRK 87
D+ +++RLD + + + L ++Q L +
Sbjct: 297 DLGELSSRLDVIQFFLLPQNL--DMAQMLHR 325
>UNIPROTKB|A3KGM4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00645968
SMR:A3KGM4 Ensembl:ENST00000427968 Ensembl:ENST00000458058
Uniprot:A3KGM4
Length = 727
Score = 277 (102.6 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 55/152 (36%), Positives = 92/152 (60%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 544 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 603
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N +
Sbjct: 604 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNAT 663
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492
+SL+++DE G+ T++ DG A+ + H L+
Sbjct: 664 AQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA 695
Score = 62 (26.9 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 1 MNIDATSVRNLEIIEP-LHSALWGTSNKKR---SLFHMLKTTKTIGGTRLLRANLLQPLK 56
+NID + L+I + H +++ ++ + SLF +L G +LLR +P
Sbjct: 220 VNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTH 279
Query: 57 DIETINTRLDCLDELMSNEQLFFGLSQFLRK 87
D+ +++RLD + + + L ++Q L +
Sbjct: 280 DLGELSSRLDVIQFFLLPQNL--DMAQMLHR 308
>DICTYBASE|DDB_G0284747 [details] [associations]
symbol:msh5 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0003684 "damaged DNA
binding" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0284747
GO:GO:0005524 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 SUPFAM:SSF53150 KO:K08741 RefSeq:XP_638383.1
EnsemblProtists:DDB0231220 GeneID:8624752 KEGG:ddi:DDB_G0284747
InParanoid:Q54P75 OMA:FAAELDC ProtClustDB:CLSZ2728934
Uniprot:Q54P75
Length = 880
Score = 277 (102.6 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 78/270 (28%), Positives = 130/270 (48%)
Query: 349 TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
TE + I GRH I E +FIPN+ +VIV+GPN SGKS Y++QV LIV L
Sbjct: 556 TEQQEIEIQSGRHLIQEYCVTNFIPNDTQNDPTKPVVIVSGPNQSGKSIYIKQVALIVFL 615
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
QIG YVPA +TI + D I+TR+ + ++ + S+FM + K+ A + + + RSL+++D
Sbjct: 616 GQIGSYVPAKSATISLFDHIYTRISSRESNAISESSFMIDCKQIAQMTRFATSRSLLIID 675
Query: 469 ELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
E G+ T+ DG ++ + LL+ T + E + N F V+ N
Sbjct: 676 EYGKGTNPLDGISLLYGLLVFLLTKSPSTPKTFICTHFYEFFELISNSTDSIFNKVLFNT 735
Query: 529 RLDFKFQLKDGPRHVPHY-GLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
++F + + + + L T + T++IT K E YK
Sbjct: 736 -MEFVIETNNNQNNNNKFLDLQSTNTTTNTKTNNNNIFNTTNKITNTNNKPNEFIPF-YK 793
Query: 588 QIQMLYHAAQRLICLKYSNQDEESIRHALQ 617
+ + ++ ++C K + +E + A +
Sbjct: 794 LKEGISSSSFGILCAKIAGVNENVVNRAYE 823
Score = 64 (27.6 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 3 IDATSVRNLEIIEPL-HSALWGTSNKKR--SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
+D ++ +L+I H + + N K SLF + TKT G +LL+ ++P ++
Sbjct: 227 LDNNTLFSLQIFSNQNHPSCYSFGNSKEGLSLFGLFDKTKTTMGKKLLKTWFMRPSRNRF 286
Query: 60 TINTRLDCLDELMSNE 75
I R + + S E
Sbjct: 287 VIEERQNLIQFFSSQE 302
Score = 45 (20.9 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 22/78 (28%), Positives = 33/78 (42%)
Query: 22 WGTSNKKRSLFHMLKTTKTIGGTRLL----------------RANLLQPLKDIETINTRL 65
+G S + SLF + TKT G +LL R NL+Q E + +
Sbjct: 249 FGNSKEGLSLFGLFDKTKTTMGKKLLKTWFMRPSRNRFVIEERQNLIQFFSSQENSSLKF 308
Query: 66 DCLDELMSNEQLFFGLSQ 83
+ LD L + + L LS+
Sbjct: 309 ELLDNLKNIKDLKIILSR 326
>UNIPROTKB|B0V0L9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334 EMBL:CR759915
UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5
SMR:B0V0L9 Ensembl:ENST00000458424 Uniprot:B0V0L9
Length = 466
Score = 283 (104.7 bits), Expect = 3.9e-22, P = 3.9e-22
Identities = 69/204 (33%), Positives = 115/204 (56%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 206 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 265
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N +
Sbjct: 266 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNAT 325
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYT---IF-ASHMENLSELATIY--P 514
+SL+++DE G+ T++ DG A+ + H L+ + T IF A++ +L +L + P
Sbjct: 326 AQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA-RGPTCPHIFVATNFLSLVQLQLLPQGP 384
Query: 515 NVKILHFYVVIRNNRLDFKFQLKD 538
V+ L N L F +Q+ D
Sbjct: 385 LVQYLTMETCEDGNDLVFFYQVSD 408
>UNIPROTKB|A3KGM9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00790547
SMR:A3KGM9 Ensembl:ENST00000412975 UCSC:uc011iro.1 Uniprot:A3KGM9
Length = 401
Score = 277 (102.6 bits), Expect = 5.3e-22, P = 5.3e-22
Identities = 55/152 (36%), Positives = 92/152 (60%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 218 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 277
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ + A + N +
Sbjct: 278 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNAT 337
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492
+SL+++DE G+ T++ DG A+ + H L+
Sbjct: 338 AQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA 369
>UNIPROTKB|A3KGM6 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00978527 SMR:A3KGM6 Ensembl:ENST00000416819 Uniprot:A3KGM6
Length = 728
Score = 269 (99.8 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 55/153 (35%), Positives = 93/153 (60%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 544 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 603
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEM-KETAFVMQNV 459
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ ++ A + N
Sbjct: 604 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNA 663
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492
+ +SL+++DE G+ T++ DG A+ + H L+
Sbjct: 664 TAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA 696
Score = 62 (26.9 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 1 MNIDATSVRNLEIIEP-LHSALWGTSNKKR---SLFHMLKTTKTIGGTRLLRANLLQPLK 56
+NID + L+I + H +++ ++ + SLF +L G +LLR +P
Sbjct: 220 VNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTH 279
Query: 57 DIETINTRLDCLDELMSNEQLFFGLSQFLRK 87
D+ +++RLD + + + L ++Q L +
Sbjct: 280 DLGELSSRLDVIQFFLLPQNL--DMAQMLHR 308
>UNIPROTKB|A3KGM5 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00893328 SMR:A3KGM5 Ensembl:ENST00000457917 Uniprot:A3KGM5
Length = 745
Score = 269 (99.8 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 55/153 (35%), Positives = 93/153 (60%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 561 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 620
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEM-KETAFVMQNV 459
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ ++ A + N
Sbjct: 621 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNA 680
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492
+ +SL+++DE G+ T++ DG A+ + H L+
Sbjct: 681 TAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA 713
Score = 62 (26.9 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 1 MNIDATSVRNLEIIEP-LHSALWGTSNKKR---SLFHMLKTTKTIGGTRLLRANLLQPLK 56
+NID + L+I + H +++ ++ + SLF +L G +LLR +P
Sbjct: 237 VNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTH 296
Query: 57 DIETINTRLDCLDELMSNEQLFFGLSQFLRK 87
D+ +++RLD + + + L ++Q L +
Sbjct: 297 DLGELSSRLDVIQFFLLPQNL--DMAQMLHR 325
>UNIPROTKB|A2BEX3 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133
SMR:A2BEX3 Ensembl:ENST00000444225 Uniprot:A2BEX3
Length = 467
Score = 275 (101.9 bits), Expect = 3.3e-21, P = 3.3e-21
Identities = 69/205 (33%), Positives = 116/205 (56%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 206 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 265
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEM-KETAFVMQNV 459
QV LI +A +G +VPA + I VD IFTR+ + +++ STFM ++ ++ A + N
Sbjct: 266 QVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNA 325
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYT---IF-ASHMENLSELATIY-- 513
+ +SL+++DE G+ T++ DG A+ + H L+ + T IF A++ +L +L +
Sbjct: 326 TAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLA-RGPTCPHIFVATNFLSLVQLQLLPQG 384
Query: 514 PNVKILHFYVVIRNNRLDFKFQLKD 538
P V+ L N L F +Q+ D
Sbjct: 385 PLVQYLTMETCEDGNDLVFFYQVSD 409
>SGD|S000002313 [details] [associations]
symbol:MSH5 "Protein of the MutS family" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IEA;IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006298 "mismatch repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002313
GO:GO:0005524 EMBL:BK006938 GO:GO:0006298 GO:GO:0030983 EMBL:X97751
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741
GeneTree:ENSGT00550000074977 EMBL:L42517 EMBL:Z74202 PIR:S67702
RefSeq:NP_010127.1 ProteinModelPortal:Q12175 DIP:DIP-1457N
IntAct:Q12175 MINT:MINT-388063 STRING:Q12175 PRIDE:Q12175
EnsemblFungi:YDL154W GeneID:851401 KEGG:sce:YDL154W CYGD:YDL154w
HOGENOM:HOG000113662 OMA:SAFMIDL OrthoDB:EOG4W6S4H NextBio:968570
Genevestigator:Q12175 GermOnline:YDL154W Uniprot:Q12175
Length = 901
Score = 250 (93.1 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 72/211 (34%), Positives = 112/211 (53%)
Query: 327 IVNSFAHTISTKPVDRYTRPHFTENGP-LAIDGGRHPILESIHNDFIPNNIFI-----SE 380
I+ SFA + + Y P E+ L I GRH + E+ +++IPN+ I SE
Sbjct: 571 ILLSFAQVSAER---NYAEPQLVEDECILEIINGRHALYETFLDNYIPNSTMIDGGLFSE 627
Query: 381 AA-------NMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMG 433
+ +++VTG N SGKS YL Q LIV LAQIGC+VPA + I + D+I TR+
Sbjct: 628 LSWCEQNKGRIIVVTGANASGKSVYLTQNGLIVYLAQIGCFVPAERARIGIADKILTRIR 687
Query: 434 TVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-S 492
T + + S+F+ + ++ A + +E+SLI++DE G+ T DG ++ S ++ S
Sbjct: 688 TQETVYKTQSSFLLDSQQMAKSLSLATEKSLILIDEYGKGTDILDGPSLFGSIMLNMSKS 747
Query: 493 LKAYTIFA-SHMENLSELATIYPNVK-ILHF 521
K I A +H L + N+K I H+
Sbjct: 748 EKCPRIIACTHFHELFNENVLTENIKGIKHY 778
Score = 68 (29.0 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 23/95 (24%), Positives = 42/95 (44%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR----SLFHMLKTTKTIGGTRLLRANLLQPLK 56
M +D ++ L I H G R S+F + + R+L++ L+ PL
Sbjct: 247 MVLDENTISALHIFPTAHKL--GHDKMMRNGFFSVFELFNQVSSDYARRILKSWLINPLT 304
Query: 57 DIETINTRLDCLDELMSNEQ--LFFGLSQFLRKFP 89
+ + I TR + L+ + +F LSQ +++ P
Sbjct: 305 NKKRIETRYSIIRTLLDKQNAIIFSDLSQSIKRCP 339
Score = 56 (24.8 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+ F F++K+G +G+ A+V GL ++E A ++ I +
Sbjct: 805 ITFLFKVKEGISK-QSFGIYCAKVCGLSRDIVERAEELSRMINR 847
>UNIPROTKB|A8JBH4 [details] [associations]
symbol:CHLREDRAFT_106717 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
EMBL:DS496153 RefSeq:XP_001699298.1 EnsemblPlants:EDO98728
GeneID:5724848 KEGG:cre:CHLREDRAFT_106717 Uniprot:A8JBH4
Length = 111
Score = 253 (94.1 bits), Expect = 8.5e-21, P = 8.5e-21
Identities = 54/111 (48%), Positives = 73/111 (65%)
Query: 386 IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTV---------- 435
+VTGPNMSGKSTYLQQV L+V+LAQ GC VPA + + R+GT
Sbjct: 1 LVTGPNMSGKSTYLQQVGLLVVLAQAGCPVPAAHCCLPPFTALLGRLGTAMGGGAGAGGG 60
Query: 436 -DNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWS 485
D+LES S+F+TEM++ A V+ RSL+++DELGR TS++DG +AW+
Sbjct: 61 ADDLESGRSSFLTEMQDAAHVLSAAGPRSLVLLDELGRGTSTADGVGLAWA 111
>UNIPROTKB|Q7SCW0 [details] [associations]
symbol:NCU09384 "Predicted protein" species:367110
"Neurospora crassa OR74A" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 HSSP:Q56215 KO:K08741
OrthoDB:EOG4W6S4H EMBL:AABX02000082 RefSeq:XP_963830.1
ProteinModelPortal:Q7SCW0 STRING:Q7SCW0
EnsemblFungi:EFNCRT00000009472 GeneID:3879979 KEGG:ncr:NCU09384
OMA:INVICER Uniprot:Q7SCW0
Length = 506
Score = 267 (99.0 bits), Expect = 3.7e-20, P = 3.7e-20
Identities = 65/202 (32%), Positives = 107/202 (52%)
Query: 385 VIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSST 444
+++TGPN SGKS Y++QV LI+ LA IG YVP +TI V DRIFTR+ T + + S
Sbjct: 236 LVLTGPNNSGKSIYMKQVALIIYLAHIGSYVPVTRATIGVTDRIFTRVATRETAMDDESA 295
Query: 445 FMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKA---YTIFAS 501
FMT++K+ AF + + RSLI+ DE G+ T+ G A+ + H L L A + ++
Sbjct: 296 FMTDLKQAAFSINFATRRSLILADEFGKGTTMEAGAAVFTAYLHHFLELDADRPRMLVST 355
Query: 502 HMENLSELATIYPNVKILHFYVVIRNN--------RLDFKFQLKDGPRHVPHYGLLLAEV 553
H ++ + P + + ++ +R N + + ++L G R GL+ A +
Sbjct: 356 HFHDVFNRGFLKPEEGVAYAHMEVRLNPEAEEREEHITYLYRLVHG-RAEHSLGLMCAAI 414
Query: 554 AGLPSTVIETARSITSRITKKE 575
+ V++ A I + + E
Sbjct: 415 NHIEDDVLKRAGDILGMLERDE 436
>WB|WBGene00003421 [details] [associations]
symbol:msh-5 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0051026
"chiasma assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070 PIR:T20659
PIR:T20660 PIR:T43201 RefSeq:NP_502531.1 UniGene:Cel.19456
ProteinModelPortal:Q19272 STRING:Q19272 EnsemblMetazoa:F09E8.3
GeneID:178268 KEGG:cel:CELE_F09E8.3 UCSC:F09E8.3 CTD:178268
WormBase:F09E8.3 GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447
InParanoid:Q19272 OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3
Uniprot:Q19272
Length = 1369
Score = 263 (97.6 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
Identities = 68/240 (28%), Positives = 122/240 (50%)
Query: 361 HPI-LESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPI + + F+PN + + I+TGPN GKS Y++ + ++V L+ IG +VPA
Sbjct: 609 HPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACGKSVYMKSIGIMVFLSHIGSFVPAR 668
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +VDRI TRM TVD++ STF ++++ A ++ + SL+++DE G+ T +
Sbjct: 669 HAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKATGNSLVIIDEFGKGTMTEV 728
Query: 479 GFAIAWSCCEHLLSLKA----YTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
G ++ S + ++ A + +SH L + N+ + V+R K+
Sbjct: 729 GLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNYIPLETNIATFLTFTVLREAGGKIKY 788
Query: 535 QLKDGPRHVP-HYGLLLAEVAGLPSTVIETA----RSITSRITKKEVKRMEINCLQYKQI 589
+ P V + L +A+ G+P VI A +++ + KE+K E++ KQ+
Sbjct: 789 LFRMTPGLVDCSFALSVAKEEGIPPPVIGRACRIYKALKAGTLLKEIKA-EVSNDNEKQL 847
Score = 59 (25.8 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID +++ L+I+ P + T + RSL+ ++ ++ G + LR P D +
Sbjct: 278 VEIDFNTIQALDIL-PKETENKKTFGQGRSLYQLMDKCRSTVGKKCLRKWFRNPTTDRDD 336
Query: 61 INTRLDCL 68
+ +R C+
Sbjct: 337 LVSRQKCV 344
>UNIPROTKB|Q19272 [details] [associations]
symbol:msh-5 "MutS protein homolog 5" species:6239
"Caenorhabditis elegans" [GO:0005634 "nucleus" evidence=IMP]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070
PIR:T20659 PIR:T20660 PIR:T43201 RefSeq:NP_502531.1
UniGene:Cel.19456 ProteinModelPortal:Q19272 STRING:Q19272
EnsemblMetazoa:F09E8.3 GeneID:178268 KEGG:cel:CELE_F09E8.3
UCSC:F09E8.3 CTD:178268 WormBase:F09E8.3
GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447 InParanoid:Q19272
OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3 Uniprot:Q19272
Length = 1369
Score = 263 (97.6 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
Identities = 68/240 (28%), Positives = 122/240 (50%)
Query: 361 HPI-LESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPI + + F+PN + + I+TGPN GKS Y++ + ++V L+ IG +VPA
Sbjct: 609 HPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACGKSVYMKSIGIMVFLSHIGSFVPAR 668
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +VDRI TRM TVD++ STF ++++ A ++ + SL+++DE G+ T +
Sbjct: 669 HAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKATGNSLVIIDEFGKGTMTEV 728
Query: 479 GFAIAWSCCEHLLSLKA----YTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
G ++ S + ++ A + +SH L + N+ + V+R K+
Sbjct: 729 GLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNYIPLETNIATFLTFTVLREAGGKIKY 788
Query: 535 QLKDGPRHVP-HYGLLLAEVAGLPSTVIETA----RSITSRITKKEVKRMEINCLQYKQI 589
+ P V + L +A+ G+P VI A +++ + KE+K E++ KQ+
Sbjct: 789 LFRMTPGLVDCSFALSVAKEEGIPPPVIGRACRIYKALKAGTLLKEIKA-EVSNDNEKQL 847
Score = 59 (25.8 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID +++ L+I+ P + T + RSL+ ++ ++ G + LR P D +
Sbjct: 278 VEIDFNTIQALDIL-PKETENKKTFGQGRSLYQLMDKCRSTVGKKCLRKWFRNPTTDRDD 336
Query: 61 INTRLDCL 68
+ +R C+
Sbjct: 337 LVSRQKCV 344
>UNIPROTKB|Q3ABU1 [details] [associations]
symbol:mutS2 "MutS2 protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR003593
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0006298 GO:GO:0017111 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456
OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 254 (94.5 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 72/285 (25%), Positives = 145/285 (50%)
Query: 340 VDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYL 399
+D Y +P +ENG L+ RHP+L +P ++ + + +++I+TGPN GK+ L
Sbjct: 283 LDAY-KPRISENGVLSFKQARHPLLGK---KAVPFDLTLGKEFDLLIITGPNTGGKTVTL 338
Query: 400 QQVCLIVILAQIGCYVPAHFST-IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
+ + ++ I+A+ G ++PA T I + ++ +G ++ + STF + + F+++N
Sbjct: 339 KTIGILTIMARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSLSTFSSHLLNLKFILEN 398
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKI 518
E L+++DELG T +G A+A + E L K + +H L+ A V+
Sbjct: 399 AREGDLVLLDELGTGTDPREGAALAKAILEELRGKKVKVVATTHTSELAAYAIETERVE- 457
Query: 519 LHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
+ V L ++L G + L +A+ GL +IE A+S + ++E+K
Sbjct: 458 -NASVEFDPESLKPTYRLHIGKPGRSN-ALYIAQGLGLKEQIIEKAKSF---LKEEELKL 512
Query: 579 MEINCLQYKQIQMLYHAAQRLICLKYSNQDEES-IRHALQNLKES 622
++ ++ + L A + + L S +++E+ + L+NL+++
Sbjct: 513 DKLIFDVEQEKRQLEKAKEEVANLLISLKEKEAKLNDELENLEKT 557
>TIGR_CMR|CHY_1564 [details] [associations]
symbol:CHY_1564 "DNA mismatch repair protein MutS"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0006298 GO:GO:0017111
GO:GO:0030983 SMART:SM00463 PROSITE:PS50828 GO:GO:0045005
SUPFAM:SSF48334 HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 254 (94.5 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 72/285 (25%), Positives = 145/285 (50%)
Query: 340 VDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYL 399
+D Y +P +ENG L+ RHP+L +P ++ + + +++I+TGPN GK+ L
Sbjct: 283 LDAY-KPRISENGVLSFKQARHPLLGK---KAVPFDLTLGKEFDLLIITGPNTGGKTVTL 338
Query: 400 QQVCLIVILAQIGCYVPAHFST-IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
+ + ++ I+A+ G ++PA T I + ++ +G ++ + STF + + F+++N
Sbjct: 339 KTIGILTIMARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSLSTFSSHLLNLKFILEN 398
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKI 518
E L+++DELG T +G A+A + E L K + +H L+ A V+
Sbjct: 399 AREGDLVLLDELGTGTDPREGAALAKAILEELRGKKVKVVATTHTSELAAYAIETERVE- 457
Query: 519 LHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
+ V L ++L G + L +A+ GL +IE A+S + ++E+K
Sbjct: 458 -NASVEFDPESLKPTYRLHIGKPGRSN-ALYIAQGLGLKEQIIEKAKSF---LKEEELKL 512
Query: 579 MEINCLQYKQIQMLYHAAQRLICLKYSNQDEES-IRHALQNLKES 622
++ ++ + L A + + L S +++E+ + L+NL+++
Sbjct: 513 DKLIFDVEQEKRQLEKAKEEVANLLISLKEKEAKLNDELENLEKT 557
>UNIPROTKB|Q720J7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_013840.1 ProteinModelPortal:Q720J7 STRING:Q720J7
GeneID:2799326 KEGG:lmf:LMOf2365_1241 PATRIC:20323712
Uniprot:Q720J7
Length = 785
Score = 247 (92.0 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 64/208 (30%), Positives = 107/208 (51%)
Query: 346 PHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405
PH ++ G + + RHP+L++ + N+I++ E +++TGPN GK+ L+ + L+
Sbjct: 294 PHLSDAGVVHLIAARHPLLDAAK--VVANDIYLGEDFTTIVITGPNTGGKTITLKTLGLL 351
Query: 406 VILAQIGCYVPAHF-STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSL 464
++AQ G +PA STI V + +F +G ++E + STF + M ++ NV+++SL
Sbjct: 352 TLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTFSSHMTNIVSILGNVNQKSL 411
Query: 465 IVMDELGRATSSSDGFAIAWSCCE-------------HLLSLKAYTIFASHMENLS---E 508
I+ DELG T +G A+A + + H LKAY H N S
Sbjct: 412 ILYDELGAGTDPQEGAALAIAILDASHAKGASVVATTHYPELKAYGYNRVHATNASVEFN 471
Query: 509 LATIYPNVKILHFYVVIRNNRLDFKFQL 536
+ T+ P K+L V R+N D +L
Sbjct: 472 VETLSPTYKLL-IGVPGRSNAFDISRRL 498
>UNIPROTKB|A8J8E2 [details] [associations]
symbol:CHLREDRAFT_120228 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 InterPro:IPR015536
PANTHER:PTHR11361:SF31 EMBL:DS496143 RefSeq:XP_001697747.1
EnsemblPlants:EDO99899 GeneID:5723369 KEGG:cre:CHLREDRAFT_120228
ProtClustDB:CLSN2703491 Uniprot:A8J8E2
Length = 86
Score = 222 (83.2 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 43/85 (50%), Positives = 58/85 (68%)
Query: 388 TGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMT 447
+GPNM GKST L+Q CL ILAQ+G +VPA T+ VD +F RMG D++ + STF
Sbjct: 1 SGPNMGGKSTLLRQTCLAAILAQVGAWVPAESLTLSPVDSLFVRMGARDSIMTGQSTFFI 60
Query: 448 EMKETAFVMQNVSERSLIVMDELGR 472
E+ ETA ++ + SL+V+DELGR
Sbjct: 61 ELAETAAMLARATPDSLVVLDELGR 85
>UNIPROTKB|A7UVX1 [details] [associations]
symbol:NCU10895 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 EMBL:AABX02000002
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 OrthoDB:EOG4VHPFT RefSeq:XP_001728471.1
ProteinModelPortal:A7UVX1 EnsemblFungi:EFNCRT00000000709
GeneID:5847835 KEGG:ncr:NCU10895 Uniprot:A7UVX1
Length = 625
Score = 240 (89.5 bits), Expect = 6.5e-17, P = 6.5e-17
Identities = 72/285 (25%), Positives = 137/285 (48%)
Query: 167 IRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANK-Y 225
+++ + E+I++D +++ P R + +A++ D +LD T +H +N+ Y
Sbjct: 147 VQRAMEEMIEDDAAYSKKPIELRNNRMWAVRY-FD-VLDNQFNEVLGTRANLHMDSNRRY 204
Query: 226 --REEXXXXXXXXX--XXXRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL 281
R + ++G + H I + + C T EL
Sbjct: 205 WLRFDYSDVEREIQPQSDVQKGNSGEVSHWKQVSIAGLEMINGTRDKRHFKCQTTELLQR 264
Query: 282 NVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVD 341
+ + A ++++ + L ++E S+ DM+ +SF +T+
Sbjct: 265 SRAIQLQADIATMQSDRLVIELKRRLQEHSSLMFDISDAIALLDML-SSFTQAATTQD-- 321
Query: 342 RYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQ 400
Y RP T++ + I RHPI+E+ + ++ N+++ + + ++TG NMSGKST+++
Sbjct: 322 -YVRPMITDS--MVIKQARHPIVEARTDQYVANDVYSGDQSGRFQVITGGNMSGKSTFIR 378
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTF 445
V LI I+AQ+G +VPA F++I + DR+F R+ T D E+N TF
Sbjct: 379 SVALIQIMAQMGSFVPAQFASISICDRVFARVSTDDAPENNLGTF 423
>TIGR_CMR|BA_4794 [details] [associations]
symbol:BA_4794 "MutS2 family protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF01713
INTERPRO:IPR002625 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003684 GO:GO:0006298 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:Q56215 RefSeq:NP_846997.1 RefSeq:YP_021440.1
RefSeq:YP_030694.1 ProteinModelPortal:Q81L40 IntAct:Q81L40
EnsemblBacteria:EBBACT00000011403 EnsemblBacteria:EBBACT00000013814
EnsemblBacteria:EBBACT00000023448 GeneID:1083920 GeneID:2815890
GeneID:2851606 KEGG:ban:BA_4794 KEGG:bar:GBAA_4794 KEGG:bat:BAS4447
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 BioCyc:BANT260799:GJAJ-4504-MONOMER
BioCyc:BANT261594:GJ7F-4656-MONOMER PANTHER:PTHR11361:SF14
TIGRFAMs:TIGR01069 Uniprot:Q81L40
Length = 786
Score = 234 (87.4 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 75/298 (25%), Positives = 137/298 (45%)
Query: 283 VRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXXXXXDMIVNS---FAHTISTKP 339
V +A E ++ + +E ++ + E+V+V +++ N FA K
Sbjct: 231 VELNNALQEARVKEKQEIERILLMLTEEVAVEADIVLSNV--EVVANLDFIFAKAFYAKR 288
Query: 340 VDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYL 399
+ + T+P + + RHP+++ +PNNI + + +++TGPN GK+ L
Sbjct: 289 I-KATKPIVNNERYMDLRQARHPLIDP--EVIVPNNIMLGKDFTTIVITGPNTGGKTVTL 345
Query: 400 QQVCLIVILAQIGCYVPA-HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
+ V + V++AQ G ++P S I V IF +G ++E + STF + M +++
Sbjct: 346 KTVGICVLMAQSGLHIPVMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEK 405
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKI 518
SL++ DELG T +G A+A S + + + A + +H L Y ++
Sbjct: 406 ADFESLVLFDELGAGTDPQEGAALAISILDEVCNRGARVVATTHYPELKAYG--YNREQV 463
Query: 519 LHFYVVIRNNRLDFKFQLKDGPRHVP--HYGLLLAEVAGLPSTVIETARSITSRITKK 574
++ V N L +L G VP +++ GL + VI+ AR+ S T K
Sbjct: 464 INASVEFDVNTLSPTHKLLIG---VPGRSNAFEISKRLGLSNRVIDQARNHISTDTNK 518
>UNIPROTKB|Q8A4A6 [details] [associations]
symbol:BT_2697 "DNA mismatch repair protein mutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0008094 SUPFAM:SSF48334 HSSP:Q56215 GO:GO:0032300
HOGENOM:HOG000022931 OMA:ESYFFAE RefSeq:NP_811609.1
ProteinModelPortal:Q8A4A6 GeneID:1072523 KEGG:bth:BT_2697
PATRIC:21060335 ProtClustDB:CLSK823265
BioCyc:BTHE226186:GJXV-2751-MONOMER Uniprot:Q8A4A6
Length = 604
Score = 220 (82.5 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 60/202 (29%), Positives = 100/202 (49%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQ 401
Y P T L + HP++ N + N I + + +I+TG NM+GKSTYL+
Sbjct: 386 YIYPQITSQSFHLQAEALGHPLMN--RNKCVRNGIDMEKRPFFIIITGANMAGKSTYLRT 443
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVD-RIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
V + +LA IG P + + + R+ T + T D+L N S F E+K ++ +
Sbjct: 444 VGVNYLLACIGA--PVWAAKMEIFPARLVTSLRTSDSLTDNESYFFAELKRLKLIIDKLK 501
Query: 461 --ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYP-NVK 517
E I++DE+ + T+S D +++ + +S+ A I A+H L L +P N++
Sbjct: 502 AGEELFIILDEILKGTNSMDKQKGSFALIKQFMSMDANGIIATHDLLLGTLIDAFPQNIR 561
Query: 518 ILHFYVVIRNNRLDFKFQLKDG 539
F I NN L F +Q++ G
Sbjct: 562 NYCFEADITNNELTFSYQMRSG 583
Score = 55 (24.4 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 27/90 (30%), Positives = 38/90 (42%)
Query: 12 EIIEPLHSALWGTSN-KKRSLFHMLKTTKT-IGGTRLLRANLLQP-LKDIETINTRLDCL 68
E I+P H + + SLF + T T IG RL AN L++ E I R + +
Sbjct: 112 EYIDPSHLYTFDLDIFGEHSLFQYINRTSTPIGKQRL--ANWFNAHLEEKEAIEQRQEAI 169
Query: 69 DELMSN---EQLFFGLSQFLRKFPKETDRV 95
EL S Q F L + P +T +
Sbjct: 170 RELSSELEFRQQFRLLGLLYKGKPSDTSEI 199
>UNIPROTKB|Q0DJI9 [details] [associations]
symbol:Os05g0274200 "Os05g0274200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005886 GO:GO:0005524
GO:GO:0003684 EMBL:AP008211 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0008094
GO:GO:0006311 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 KO:K08735 ProtClustDB:CLSN2680872
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:NP_001055070.2
UniGene:Os.18121 STRING:Q0DJI9 EnsemblPlants:LOC_Os05g19270.1
GeneID:4338271 KEGG:osa:4338271 Gramene:Q0DJI9 Uniprot:Q0DJI9
Length = 113
Score = 187 (70.9 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 41/85 (48%), Positives = 57/85 (67%)
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV + V++AQ+G +VP ++I V D IF R+G D STFM EM ETA +++ S
Sbjct: 15 QVGVNVLMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAS 74
Query: 461 ERSLIVMDELGRATSSSDGFAIAWS 485
++SLI++DELGR TS+ DGF WS
Sbjct: 75 DKSLIIIDELGRGTSTYDGFG--WS 97
>UNIPROTKB|Q23YW9 [details] [associations]
symbol:TTHERM_00857890 "MutS domain II family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:GG662557 RefSeq:XP_001021931.1
ProteinModelPortal:Q23YW9 EnsemblProtists:EAS01686 GeneID:7832209
KEGG:tet:TTHERM_00857890 Uniprot:Q23YW9
Length = 1537
Score = 158 (60.7 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 40/172 (23%), Positives = 90/172 (52%)
Query: 374 NNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMG 433
N+I IS+ N+ + G GKS ++ + +I I+AQ+GCYVPA I + + I ++
Sbjct: 1232 NSICISDLNNLQLFLGQQNCGKSILIKSIAIIQIMAQVGCYVPAKNGVISLKNLILSKFY 1291
Query: 434 TVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL 493
T D++E S+F +E+++ F++++ + + D+ S + +++ S + ++ +
Sbjct: 1292 TTDSIEEKQSSFTSELQQLDFIIKSKASK-----DQQRGCLSVNQALSLSKSKDKTIILI 1346
Query: 494 KAYTIFASHMENLS-------ELATIYPNVKIL---HFYVVIRNNRLDFKFQ 535
+ + + +N+S E++ +PN +L +Y +++ + FQ
Sbjct: 1347 DEFCSSSQYEDNISISLAFLEEISICFPNSFLLCASKYYELVQMTQFYNNFQ 1398
Score = 110 (43.8 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 24 TSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCL-------DELMSNEQ 76
+ N+K SL + K +T+ G RLLR+NLLQPL D++++ R + D ++S Q
Sbjct: 944 SQNEKGSLISLFKI-QTVAGKRLLRSNLLQPLNDLKSLQDRQSAVFEFTMNQDSILSQLQ 1002
Query: 77 LFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKSQ 120
L + + KE +LC + K + K LD+ +K Q
Sbjct: 1003 LQLQIIDMQNSYIKELKNLLCDQQLEQIKESIKQNLDLSYLEKIQ 1047
>UNIPROTKB|Q76DY7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:274 "Thermus
thermophilus" [GO:0000400 "four-way junction DNA binding"
evidence=IDA] [GO:0004519 "endonuclease activity" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IMP] [GO:0030983 "mismatched DNA
binding" evidence=IDA] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0016887 GO:GO:0006298
GO:GO:0004519 GO:GO:0045910 SMART:SM00463 PROSITE:PS50828
GO:GO:0045005 SUPFAM:SSF48334 GO:GO:0000400 KO:K07456
PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069 EMBL:AB107662
RefSeq:YP_144911.1 ProteinModelPortal:Q76DY7 GeneID:3169358
KEGG:ttj:TTHA1645 Uniprot:Q76DY7
Length = 744
Score = 210 (79.0 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 67/273 (24%), Positives = 127/273 (46%)
Query: 358 GGRHPILESIHN---DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
G R+ + + H D + N+ + E +++++GPNM GK+ L+ + L V++AQ G +
Sbjct: 281 GERYELYRAFHPLIPDAVRNSFALDEKNRILLISGPNMGGKTALLKTLGLAVLMAQSGLF 340
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
V A + + DR++ +G +L+ N STF ++ +++ + SL+++DELG T
Sbjct: 341 VAAEKALLAWPDRVYADIGDEQSLQENLSTFAGHLRRLREMLEEATSHSLVLIDELGSGT 400
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+G A++ + E LL + +H+ L A ++ + R ++
Sbjct: 401 DPEEGAALSQAILEALLERGVKGMVTTHLSPLKAFAQGREGIQNASMRFDLEALRPTYEL 460
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYH 594
L R Y L +A LP V++ A ++ E R+E L+ + + L
Sbjct: 461 VLGVPGRS---YALAIARRLALPEEVLKRAEALLP-----EGGRLEA-LLERLEAERLAL 511
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKESFIDGR 627
A+R + +Q E +R AL + F + R
Sbjct: 512 EAERERLRRELSQVER-LRKALAEREARFEEER 543
>UNIPROTKB|Q81YJ6 [details] [associations]
symbol:BAS3289 "Putative MutS family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000432 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 208 (78.3 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 58/269 (21%), Positives = 118/269 (43%)
Query: 247 SIPHKD-IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVD 305
+IP K + ++ + ++ G+ + + LN S E + L L
Sbjct: 194 TIPIKSSYKNQVAGSIVEASAKGSTVFIEPHTVTKLNAELASLKAEEAMEEYQILATLSG 253
Query: 306 AIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILE 365
+ E++ DM+ FA +K +D P ++G + + +HP+L
Sbjct: 254 MVVENIYHIKINMELISQYDMV---FAKAKFSKSIDGI-EPKLNDHGHIHLVNCKHPLLS 309
Query: 366 SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST-IRV 424
+P N I + +I+TGPN GK+ L+ + L+ + G ++ T I +
Sbjct: 310 G---KVVPLNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAI 366
Query: 425 VDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAW 484
+ +F +G ++E+ STF + MK + +M+ + +L++ DE+G T ++G A+A
Sbjct: 367 FENVFVDIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAI 426
Query: 485 SCCEHLLSLKAYTIFASHMENLSELATIY 513
S E T+ ++H + + ++
Sbjct: 427 SILEEFYLAGCITVASTHYGEIKRFSEMH 455
>TIGR_CMR|BA_3547 [details] [associations]
symbol:BA_3547 "MutS family protein, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0006259 "DNA metabolic
process" evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 208 (78.3 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 58/269 (21%), Positives = 118/269 (43%)
Query: 247 SIPHKD-IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVD 305
+IP K + ++ + ++ G+ + + LN S E + L L
Sbjct: 194 TIPIKSSYKNQVAGSIVEASAKGSTVFIEPHTVTKLNAELASLKAEEAMEEYQILATLSG 253
Query: 306 AIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILE 365
+ E++ DM+ FA +K +D P ++G + + +HP+L
Sbjct: 254 MVVENIYHIKINMELISQYDMV---FAKAKFSKSIDGI-EPKLNDHGHIHLVNCKHPLLS 309
Query: 366 SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST-IRV 424
+P N I + +I+TGPN GK+ L+ + L+ + G ++ T I +
Sbjct: 310 G---KVVPLNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAI 366
Query: 425 VDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAW 484
+ +F +G ++E+ STF + MK + +M+ + +L++ DE+G T ++G A+A
Sbjct: 367 FENVFVDIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAI 426
Query: 485 SCCEHLLSLKAYTIFASHMENLSELATIY 513
S E T+ ++H + + ++
Sbjct: 427 SILEEFYLAGCITVASTHYGEIKRFSEMH 455
>TIGR_CMR|GSU_0547 [details] [associations]
symbol:GSU_0547 "MutS2 family protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 SMART:SM00463
PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:NP_951605.1 ProteinModelPortal:Q74FQ9 GeneID:2685958
KEGG:gsu:GSU0547 PATRIC:22023851 ProtClustDB:CLSK827917
BioCyc:GSUL243231:GH27-531-MONOMER Uniprot:Q74FQ9
Length = 792
Score = 191 (72.3 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 83/384 (21%), Positives = 155/384 (40%)
Query: 203 LLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSIPHK-DIQGKLPSTF 261
L D+ ++ T LA RE ++G IP + D +G +P
Sbjct: 152 LSDLRQKKRHLTERIRRRLAEIVRETGVTTFLQDDFITQRGGRWVIPVRMDSKGMVPGVV 211
Query: 262 IQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVXXXXXXXX 321
V G LE+ L ++ E + + IR++
Sbjct: 212 HDVSNSGETAFMEPLEIIGLANELENLVAEEKAEMIRIVRTICRMIRQEADGLDEQFRIL 271
Query: 322 XXXDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHND-----FIPNNI 376
D ++N A + + T P T+ + + GRHP+L + + +P ++
Sbjct: 272 VRLD-VLNGIA--LFADSLGAET-PEITDARFIRVREGRHPLLALMARERGVGRVVPLDL 327
Query: 377 FI-------SEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA-HFSTIRVVDR 427
+ S AN V ++TGPN GK+ L+ L+ ++A G VPA S+ ++
Sbjct: 328 GLGGAERPDSHVANQVMVITGPNAGGKTISLKTTGLLHLMALAGIPVPAASTSSFPLISD 387
Query: 428 IFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCC 487
+ +G ++E + STF + A +++ R+++++DELG T G AI+ +
Sbjct: 388 LLVDIGDEQSIEQSLSTFSAHVSNIAGILERADRRTVVLLDELGTGTEPVQGAAISCAVL 447
Query: 488 EHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYG 547
L A I +H+ ++ + ++ +++ + L ++L G H
Sbjct: 448 ADLQDKGALVIATTHLTDI--VGFVHKRDGMVNASMEFDRQTLTPLYRLTVGEPGQSH-A 504
Query: 548 LLLAEVAGLPSTVIETARSITSRI 571
L +A GLP V+ A + SR+
Sbjct: 505 LEIARRYGLPDRVVAVATGMLSRM 528
Score = 55 (24.4 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 42 GGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKF 88
G TR A L++PL D E I R +DE+ QL LS LR F
Sbjct: 26 GATRDETA-LIRPLDDREAIVRRFGQVDEIRRLRQLGIDLS--LRSF 69
Score = 53 (23.7 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 22/88 (25%), Positives = 36/88 (40%)
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYH 594
+LKD R + LAE L E AR R+ + E +R E ++ + +
Sbjct: 538 ELKDQRRR---HEEALAEAERLRRDAEEKARIARERLAEAETRRREATEKALQEAKEIVR 594
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKES 622
AA+R + E R A + + E+
Sbjct: 595 AARRDVNAIIEEARREKSREARKKIDEA 622
>WB|WBGene00003420 [details] [associations]
symbol:msh-4 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 181 (68.8 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 39/98 (39%), Positives = 59/98 (60%)
Query: 432 MGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL 491
MG D L N S F +EM + A ++Q + SL+V+DEL R+TS+ +G AI ++ CE +L
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVL 60
Query: 492 SLKAYTIFASHMENLSELATIYPN-VKILHFYVVIRNN 528
L +YT A+H +++ LA Y N + HF I +N
Sbjct: 61 KLHSYTFLATHFLDIAALAN-YSNAIDNYHFLPQIDDN 97
>UNIPROTKB|Q22103 [details] [associations]
symbol:msh-4 "Protein MSH-4" species:6239 "Caenorhabditis
elegans" [GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 181 (68.8 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 39/98 (39%), Positives = 59/98 (60%)
Query: 432 MGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL 491
MG D L N S F +EM + A ++Q + SL+V+DEL R+TS+ +G AI ++ CE +L
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVL 60
Query: 492 SLKAYTIFASHMENLSELATIYPN-VKILHFYVVIRNN 528
L +YT A+H +++ LA Y N + HF I +N
Sbjct: 61 KLHSYTFLATHFLDIAALAN-YSNAIDNYHFLPQIDDN 97
>UNIPROTKB|A8JDD7 [details] [associations]
symbol:CHLREDRAFT_121781 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 Pfam:PF00488 PROSITE:PS00486 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 EMBL:DS496161 RefSeq:XP_001700459.1 STRING:A8JDD7
EnsemblPlants:EDO98148 GeneID:5726009 KEGG:cre:CHLREDRAFT_121781
Uniprot:A8JDD7
Length = 96
Score = 180 (68.4 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 38/97 (39%), Positives = 59/97 (60%)
Query: 393 SGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKET 452
SGKS Y + V LI LA +G YVPA +TI + DRI R T L + + TFM ++ +
Sbjct: 1 SGKSCYARAVALIAYLAHLGSYVPAQAATIGLADRIAARCATPP-LGAATVTFMADLTQV 59
Query: 453 AFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEH 489
+ +++ +ER+L+V+DE G+ T +SDG + + H
Sbjct: 60 SAMLRTATERTLLVLDEFGKGTLASDGVGLCAALLTH 96
>UNIPROTKB|Q8EYH8 [details] [associations]
symbol:LA_4236 "DNA mismatch repair protein ATPase
component" species:189518 "Leptospira interrogans serovar Lai str.
56601" [GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
GO:GO:0032300 EMBL:AE010300 GenomeReviews:AE010300_GR
RefSeq:NP_714416.1 ProteinModelPortal:Q8EYH8 GeneID:1153578
KEGG:lil:LA_4236 PATRIC:22389315 HOGENOM:HOG000117340 OMA:RERSLAC
ProtClustDB:CLSK575192 BioCyc:LINT189518:GJBB-3356-MONOMER
Uniprot:Q8EYH8
Length = 610
Score = 192 (72.6 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 57/203 (28%), Positives = 106/203 (52%)
Query: 343 YTRPHF-TENGPLAIDG-GR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYL 399
Y P +EN I G G HP++ S + + N + E N+V++TG NMSGK+TYL
Sbjct: 394 YCFPEILSENSKEGISGKGLFHPLIPS--DSRVSNPLDFIEEQNVVLITGSNMSGKTTYL 451
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+ + + IL+ G VPA ++ V+ +I T M DNLE S F E++ + +++ +
Sbjct: 452 RTIGVASILSMAGGPVPASKFSLPVL-KIHTSMRNEDNLEEGISFFYAEVRRLSEIVKKI 510
Query: 460 SERS---LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516
+++ L+++DE+ + T++ + + L + SH +L ELA + V
Sbjct: 511 RDKNSSHLVLLDEILKGTNTRERSLACKGILKELKKNRTIVFVTSH--DL-ELAKV-EGV 566
Query: 517 KILHFYVVIRNNRLDFKFQLKDG 539
+ HF + + + F +++++G
Sbjct: 567 ILKHFQEEVLDGTMYFDYKIREG 589
>TAIR|locus:2087193 [details] [associations]
symbol:MSH1 "AT3G24320" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006298 "mismatch repair" evidence=ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032042 "mitochondrial DNA metabolic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000002 "mitochondrial genome
maintenance" evidence=IGI;IMP] [GO:0009408 "response to heat"
evidence=IGI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation of cell
cycle" evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009411 GO:GO:0003684 GO:GO:0009408 EMBL:AP000382
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF82771 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 EMBL:AY191303
IPI:IPI00526404 RefSeq:NP_189075.2 UniGene:At.43463 HSSP:Q56215
ProteinModelPortal:Q84LK0 SMR:Q84LK0 STRING:Q84LK0 PaxDb:Q84LK0
PRIDE:Q84LK0 EnsemblPlants:AT3G24320.1 GeneID:822021
KEGG:ath:AT3G24320 GeneFarm:4139 TAIR:At3g24320
HOGENOM:HOG000264796 InParanoid:Q84LK0 OMA:RGTETAK PhylomeDB:Q84LK0
ProtClustDB:CLSN2680862 Genevestigator:Q84LK0 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 Uniprot:Q84LK0
Length = 1118
Score = 192 (72.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 61/238 (25%), Positives = 103/238 (43%)
Query: 338 KPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKST 397
KP+D +R T P D ++HN ++F+ +TGPN GKS+
Sbjct: 728 KPLDGASRMKLTGLSPYWFDVSSGT---AVHNTVDMQSLFL--------LTGPNGGGKSS 776
Query: 398 YLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQ 457
L+ +C +L G VPA + I D I M + D+ S+F EM E ++
Sbjct: 777 LLRSICAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIRSIVS 836
Query: 458 NVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVK 517
+ RSL+++DE+ R T ++ G IA S E L + I ++H+ + L N+
Sbjct: 837 QATSRSLVLIDEICRGTETAKGTCIAGSVVESLDTSGCLGIVSTHLHGIFSLPLTAKNIT 896
Query: 518 ILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ ++L DG A+ G+P +VI+ A ++ + K+
Sbjct: 897 YKAMGAENVEGQTKPTWKLTDGVCR-ESLAFETAKREGVPESVIQRAEALYLSVYAKD 953
>UNIPROTKB|Q0JBW2 [details] [associations]
symbol:Os04g0507000 "Os04g0507000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 GO:GO:0009411 GO:GO:0003684
EMBL:AP008210 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 SUPFAM:SSF82771 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 OMA:RGTETAK GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:NP_001053261.1 UniGene:Os.74427 STRING:Q0JBW2 PRIDE:Q0JBW2
EnsemblPlants:LOC_Os04g42784.1 GeneID:4336345 KEGG:osa:4336345
Gramene:Q0JBW2 ProtClustDB:CLSN2694915 Uniprot:Q0JBW2
Length = 1132
Score = 192 (72.6 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 57/210 (27%), Positives = 95/210 (45%)
Query: 359 GRHPI-LESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
G P L++ + I N++ + ++ I+TGPN GKS+ L+ VC +L G VPA
Sbjct: 737 GTFPYWLDTNQGNAILNDVHMH---SLFILTGPNGGGKSSMLRSVCAAALLGICGLMVPA 793
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I D I M D+ S+F EM E ++ + RSL+++DE+ R T ++
Sbjct: 794 ASAVIPHFDSIMLHMKAYDSPADGKSSFQIEMSEIRSLVCRATARSLVLIDEICRGTETA 853
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G IA S E L ++ I ++H+ + +L N I + + ++L
Sbjct: 854 KGTCIAGSIIERLDNVGCIGIISTHLHGIFDLPLSLHNTDFKAMGTEIIDRCIQPTWKLM 913
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
DG A G+P +I A +
Sbjct: 914 DGICR-ESLAFQTARKEGMPDLIIRRAEEL 942
>UNIPROTKB|B1N483 [details] [associations]
symbol:EHI_019060 "DNA mismatch repair protein mutS,
putative" species:5759 "Entamoeba histolytica" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 EMBL:DS571351 RefSeq:XP_001913998.1
ProteinModelPortal:B1N483 STRING:B1N483 GeneID:6219997
KEGG:ehi:EHI_019060 EuPathDB:AmoebaDB:EHI_019060 InParanoid:B1N483
Uniprot:B1N483
Length = 225
Score = 161 (61.7 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 49/170 (28%), Positives = 87/170 (51%)
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+A +GC V A + I + IFT+ + D+ S+ S F T+ + ++++S SL+++
Sbjct: 1 MALLGCGVCASNAQIPLFSHIFTKFSSSDSSLSSLSAFTTDCSLLSTSLRHLSNDSLLLI 60
Query: 468 DELGRATSSSDGFAIAWSCCEHLLSLKAY---TIFASHMENLSELATIYPNVKILHFYVV 524
DE G+ T SDG A+ + +L SL + TI ++H + + V L V+
Sbjct: 61 DEFGKGTHPSDGLALFIATLRYLQSLGSNAPKTIISTHFISFFHYIDLNKCVP-LKMDVL 119
Query: 525 IR--NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRIT 572
+ NN + F + L +G YG+ A +A LPS++I A I + ++
Sbjct: 120 LNQSNNSITFLYHLVNGISD-SSYGIHCARLAHLPSSLISRASQIATSLS 168
>UNIPROTKB|D4A0A8 [details] [associations]
symbol:Msh4 "Protein Msh4" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007696 InterPro:IPR007861
Pfam:PF05190 RGD:1309190 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 IPI:IPI00566189 Ensembl:ENSRNOT00000050730
Uniprot:D4A0A8
Length = 173
Score = 142 (55.0 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 40/163 (24%), Positives = 74/163 (45%)
Query: 189 RTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEXXXXXXXXXXXXRQGFYLSI 248
RTQ+C+A++ I LDIARR++ + + + + ++ E+ R GF++ +
Sbjct: 8 RTQKCYAVRSNISEFLDIARRTYTEIVDDIAGMISQLAEKYSLPLRTSFSSAR-GFFIQM 66
Query: 249 PHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVD 305
+LPS FI++ K N+ ++ +L +N R + + E Y T + + L+
Sbjct: 67 TTDCAALSSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLS 126
Query: 306 AIREDVSVXXXXXXXXXXXDMIVNSFAHTISTKPVDRYTRPHF 348
I E + DM++ SFAH + T +F
Sbjct: 127 EIYEHIHCLYKLSDTVSMLDMLL-SFAHACTLSDYGCRTEYYF 168
>UNIPROTKB|Q7NE77 [details] [associations]
symbol:gll4003 "Gll4003 protein" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
EMBL:BA000045 GenomeReviews:BA000045_GR SUPFAM:SSF48334 HSSP:Q56215
GO:GO:0032300 RefSeq:NP_926949.1 ProteinModelPortal:Q7NE77
GeneID:2602406 KEGG:gvi:gll4003 PATRIC:22047503
HOGENOM:HOG000022931 OMA:ESYFFAE ProtClustDB:CLSK923279
BioCyc:GVIO251221:GH9A-4052-MONOMER Uniprot:Q7NE77
Length = 619
Score = 151 (58.2 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 56/204 (27%), Positives = 96/204 (47%)
Query: 361 HPIL-ESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++ E++ + N++ + ++VTG NMSGKST L+ + L ++LA G V A
Sbjct: 407 HPLIGEAVR---VANDVTLGPPGTFLLVTGSNMSGKSTLLRSIGLNIVLALAGAPVCARS 463
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV--SERSLI-VMDELGRATSS 476
+ V + T M D+L S S +M E++ V+ +ER L+ ++DE+ T+S
Sbjct: 464 LRLPPVT-LKTSMRVQDSLASGLSFYMAELQRLKEVVDAARPAERPLLYLLDEILLGTNS 522
Query: 477 SDGFAIAWSCCEHLLSLKAYTIFASH---MENLSELATIYPNVKIL-HFYVVIRNNRLDF 532
++ LL A ++H + +L ELA V HF + F
Sbjct: 523 AERQVAVRRVLSFLLGRGALGAISTHDLALADLPELAAAARTVHFREHFAAGAAGPVMTF 582
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGL 556
++++ G + L L E+ GL
Sbjct: 583 DYRMRPGVAPTTN-ALKLLELVGL 605
Score = 44 (20.5 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 30 SLFHMLKTTKTIGGTRLLRANLLQP 54
SLF + T T G RLL LL+P
Sbjct: 138 SLFQLTCTAHTPMGRRLLARWLLEP 162
>UNIPROTKB|A9WD21 [details] [associations]
symbol:Caur_0339 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633979.1 ProteinModelPortal:A9WD21
GeneID:5827952 KEGG:cau:Caur_0339 PATRIC:21411210
HOGENOM:HOG000020534 OMA:THFEREE ProtClustDB:CLSK865138
BioCyc:CAUR324602:GIXU-342-MONOMER Uniprot:A9WD21
Length = 508
Score = 147 (56.8 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 38/177 (21%), Positives = 81/177 (45%)
Query: 374 NNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMG 433
N+ F++ +++VTGPN GK+T+ + + LA +GC VP + + + DRIFT
Sbjct: 320 NDFFLTGPERILVVTGPNQGGKTTFARMFGQLHYLASLGCPVPGREAGLFLADRIFTHFE 379
Query: 434 TVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL 493
+++ ++ ++ + + S+ +++E+ +T+ D ++ L L
Sbjct: 380 RIEDSQNLRGKLEDDLVRMHRALIQATPDSIFILNEIFSSTTVQDALFLSKEIMARLTDL 439
Query: 494 KA---YTIFASHMENLSE-----LATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRH 542
+ F + +LSE +A++ PN + + +IR + L +H
Sbjct: 440 DVLGVWVTFLDELASLSEKMVSMVASVDPNDPVRRTFQIIRKPADGLAYALSLARKH 496
>UNIPROTKB|A3KGN1 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AL844216 HGNC:HGNC:7328 ChiTaRS:MSH5 SMR:A3KGN1
Ensembl:ENST00000430241 HOGENOM:HOG000172377 Uniprot:A3KGN1
Length = 135
Score = 120 (47.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 2 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 61
Query: 401 QVCLIV 406
QV V
Sbjct: 62 QVAKAV 67
>UNIPROTKB|H0YDS7 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 EMBL:CR759915 EMBL:CR925765 HGNC:HGNC:7328
ChiTaRS:MSH5 Ensembl:ENST00000469938 Ensembl:ENST00000471854
Ensembl:ENST00000484309 Ensembl:ENST00000486024
Ensembl:ENST00000497253 Uniprot:H0YDS7
Length = 166
Score = 120 (47.3 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 2 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 61
Query: 401 QVCLIV 406
QV V
Sbjct: 62 QVAKAV 67
>UNIPROTKB|A9WD22 [details] [associations]
symbol:Caur_0340 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633980.1 GeneID:5827953
KEGG:cau:Caur_0340 PATRIC:21411212 HOGENOM:HOG000020547 OMA:QGGKSTF
ProtClustDB:CLSK865139 BioCyc:CAUR324602:GIXU-343-MONOMER
Uniprot:A9WD22
Length = 505
Score = 138 (53.6 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 30/132 (22%), Positives = 63/132 (47%)
Query: 372 IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTR 431
+ N ++ +++IVTGPN GK+ +L+ V + ++ Q G +VPA + +FT
Sbjct: 316 VVGNDISADGKSLIIVTGPNRGGKTVFLRSVGVAQLMMQCGMFVPAESFLANLTTGLFTH 375
Query: 432 MGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL 491
++ F E+ + ++ ++ +L++++E AT+ +G IA L+
Sbjct: 376 FKREEDKTMERGKFEEELARMSVIVDYLTPNALLLLNESFSATNEREGSEIARQIVSTLI 435
Query: 492 SLKAYTIFASHM 503
F +H+
Sbjct: 436 EKGIKVYFVTHL 447
>UNIPROTKB|H7C2J4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
SMART:SM00533 GO:GO:0005524 EMBL:AL662899 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HGNC:HGNC:7328 ChiTaRS:MSH5
ProteinModelPortal:H7C2J4 Ensembl:ENST00000423982 Bgee:H7C2J4
Uniprot:H7C2J4
Length = 637
Score = 116 (45.9 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 343 YTRPHFTENG-PLAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
Y+RP ++ + I GRHP++E F+PN+ + + ++TGPN SGKS YL+
Sbjct: 544 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 603
Query: 401 QV 402
Q+
Sbjct: 604 QL 605
Score = 62 (26.9 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 1 MNIDATSVRNLEIIEP-LHSALWGTSNKKR---SLFHMLKTTKTIGGTRLLRANLLQPLK 56
+NID + L+I + H +++ ++ + SLF +L G +LLR +P
Sbjct: 220 VNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTH 279
Query: 57 DIETINTRLDCLDELMSNEQLFFGLSQFLRK 87
D+ +++RLD + + + L ++Q L +
Sbjct: 280 DLGELSSRLDVIQFFLLPQNL--DMAQMLHR 308
>UNIPROTKB|A8J417 [details] [associations]
symbol:CHLREDRAFT_175628 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 EMBL:DS496136
RefSeq:XP_001696056.1 ProteinModelPortal:A8J417 SMR:A8J417
EnsemblPlants:EDP01005 GeneID:5721674 KEGG:cre:CHLREDRAFT_175628
Uniprot:A8J417
Length = 594
Score = 124 (48.7 bits), Expect = 0.00029, P = 0.00029
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS--LKAYTIFASHMENLSELATIYPNVK 517
+ SL+++DELGR TS+ DGF +AW+ EHL A +FA+H L+EL +V
Sbjct: 507 TSHSLVIIDELGRGTSTYDGFGLAWAISEHLAGPGCGAPCLFATHFHELTELRA---DVG 563
Query: 518 ILHFYVV-IRNNRL 530
+ + V+ + N RL
Sbjct: 564 VQNMQVIAMANERL 577
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 628 592 0.00084 120 3 11 22 0.49 33
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 179
No. of states in DFA: 615 (65 KB)
Total size of DFA: 299 KB (2155 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 49.42u 0.21s 49.63t Elapsed: 00:00:02
Total cpu time: 49.47u 0.21s 49.68t Elapsed: 00:00:02
Start: Mon May 20 18:33:49 2013 End: Mon May 20 18:33:51 2013
WARNINGS ISSUED: 1