BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006859
(628 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449525431|ref|XP_004169721.1| PREDICTED: DNA mismatch repair protein MSH4-like, partial [Cucumis
sativus]
Length = 770
Score = 1135 bits (2937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/628 (85%), Positives = 593/628 (94%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
++IDATSV+NLEIIEPLHS LWGTSNKKRSL++MLKTTKTIGG+RLLRANLLQPLKDIET
Sbjct: 143 VSIDATSVQNLEIIEPLHSNLWGTSNKKRSLYNMLKTTKTIGGSRLLRANLLQPLKDIET 202
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLDCLDELMSNEQLFFGLSQ LRKFPKETDRVLCHFCFK KKVT++VL +AKKSQ
Sbjct: 203 INARLDCLDELMSNEQLFFGLSQALRKFPKETDRVLCHFCFKQKKVTNEVLHPSDAKKSQ 262
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LISSIILLKTAL+ALPLL+KVLK+A+SFLLANIY+S+CENEKY +IRKRIGEVIDEDVL
Sbjct: 263 NLISSIILLKTALEALPLLSKVLKEAKSFLLANIYKSICENEKYTNIRKRIGEVIDEDVL 322
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
HARVPF+ARTQQCFA+K GIDGLLDIARR+FCDTSEA+HNLANKYREE KL NLKLPFNN
Sbjct: 323 HARVPFIARTQQCFAVKAGIDGLLDIARRTFCDTSEAIHNLANKYREEYKLSNLKLPFNN 382
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
RQGFYLSIPHKD+QGKLP+ FIQV+KHGNNI CSTLELASLNVRNKSAAGECYIRTEICL
Sbjct: 383 RQGFYLSIPHKDVQGKLPNKFIQVLKHGNNIRCSTLELASLNVRNKSAAGECYIRTEICL 442
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E LVDAIREDVS+LTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP+FTENGP+AI+ R
Sbjct: 443 EGLVDAIREDVSMLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPNFTENGPMAIEAAR 502
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPILESIHNDF+ N+IF+SEA+NM+IV GPNMSGKSTYLQQ+CL+VILAQIGCYVPAHFS
Sbjct: 503 HPILESIHNDFVANSIFLSEASNMIIVMGPNMSGKSTYLQQMCLLVILAQIGCYVPAHFS 562
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
T+RVVDRIFTRMGT D+LESNSSTFMTEMKETAFVMQNVS+RSL+V+DELGRATSSSDGF
Sbjct: 563 TLRVVDRIFTRMGTDDSLESNSSTFMTEMKETAFVMQNVSQRSLVVVDELGRATSSSDGF 622
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
AIAWSCCE+LL+LKAYTIFA+HME LSELATIYPNVKILHF+V IRN+RLDFKFQLKDG
Sbjct: 623 AIAWSCCEYLLTLKAYTIFATHMEGLSELATIYPNVKILHFHVDIRNHRLDFKFQLKDGI 682
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
RHVPHYGLLLAEVAGLPS+VIETAR ITSRI +KE +RMEIN LQY I+M Y+ AQRLI
Sbjct: 683 RHVPHYGLLLAEVAGLPSSVIETARDITSRIKEKEERRMEINHLQYHPIRMTYNVAQRLI 742
Query: 601 CLKYSNQDEESIRHALQNLKESFIDGRI 628
CLKYS+ DE+S+R AL+NLKE +I GR+
Sbjct: 743 CLKYSSHDEDSVREALRNLKEGYISGRL 770
>gi|297804446|ref|XP_002870107.1| hypothetical protein ARALYDRAFT_493139 [Arabidopsis lyrata subsp.
lyrata]
gi|297315943|gb|EFH46366.1| hypothetical protein ARALYDRAFT_493139 [Arabidopsis lyrata subsp.
lyrata]
Length = 792
Score = 1099 bits (2842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/628 (81%), Positives = 578/628 (92%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNIDATSV NLEII+P H+AL GTSNKKRSLF M KTTKT+GGTRLLRANLLQPLKDIET
Sbjct: 165 MNIDATSVENLEIIDPFHNALLGTSNKKRSLFQMFKTTKTVGGTRLLRANLLQPLKDIET 224
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDCLDELMSNEQLFFGLSQ LRKFP+ETDRVLCHFCFKPKKVT V+ +N ++SQ
Sbjct: 225 INTRLDCLDELMSNEQLFFGLSQVLRKFPQETDRVLCHFCFKPKKVTEAVIGFENTRRSQ 284
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ISSIILLKTALDALPLLAKVLKDA+ FLLAN+Y+SVCEN++YASIRK+IGEVID+DVL
Sbjct: 285 NMISSIILLKTALDALPLLAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVL 344
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
HARVPFVARTQQCFA+K GIDG LDIARR+FCDTSEA+HNLA+KYREE LPNLKLPFNN
Sbjct: 345 HARVPFVARTQQCFALKAGIDGFLDIARRTFCDTSEAIHNLASKYREEFNLPNLKLPFNN 404
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
RQGF+ IP K++QGKLP+ F QVVKHG NIHCS+LELASLNVRNKSAAGEC+IRTE CL
Sbjct: 405 RQGFFFRIPQKEVQGKLPNKFTQVVKHGKNIHCSSLELASLNVRNKSAAGECFIRTETCL 464
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
EAL+DAIRED+S LTLLAEVLCLLDMIVNSFAHTISTKPVDRY+RP T++GPLAID GR
Sbjct: 465 EALMDAIREDISALTLLAEVLCLLDMIVNSFAHTISTKPVDRYSRPELTDSGPLAIDAGR 524
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HP+LESIHNDF+ N+IF+SEA NM++V GPNMSGKSTYLQQVCL+VILAQIGCYVPA F+
Sbjct: 525 HPLLESIHNDFVSNSIFMSEATNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFA 584
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
TIRVVDRIFTRMGT+DNLESNSSTFMTEM+ETAF+MQNV+ RSLIVMDELGRATSSSDG
Sbjct: 585 TIRVVDRIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGL 644
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
A+AWSCCE+LLSLKAYT+FA+HM++L+ELATIYPNVK+LHFYV IR+NRLDFKFQL+DG
Sbjct: 645 AMAWSCCEYLLSLKAYTVFATHMDSLAELATIYPNVKVLHFYVDIRDNRLDFKFQLRDGT 704
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
HVPHYGLLLAEVAGLP+TVI+TAR+IT+ IT KE KR+E+NC ++ +I +Y AQRLI
Sbjct: 705 LHVPHYGLLLAEVAGLPTTVIDTARTITTWITDKENKRIELNCGKHHEIHRIYRVAQRLI 764
Query: 601 CLKYSNQDEESIRHALQNLKESFIDGRI 628
CLKYS Q E+SIR ALQNLK+SFI+ R+
Sbjct: 765 CLKYSRQTEDSIRQALQNLKDSFIEERL 792
>gi|79476962|ref|NP_193469.2| DNA mismatch repair protein MSH4 [Arabidopsis thaliana]
gi|395406788|sp|F4JP48.1|MSH4_ARATH RecName: Full=DNA mismatch repair protein MSH4; Short=AtMSH4;
AltName: Full=MutS protein homolog 4
gi|332658482|gb|AEE83882.1| DNA mismatch repair protein MSH4 [Arabidopsis thaliana]
Length = 792
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/628 (81%), Positives = 574/628 (91%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNIDATSV NLE+I+P H+AL GTSNKKRSLF M KTTKT GGTRLLRANLLQPLKDIET
Sbjct: 165 MNIDATSVENLELIDPFHNALLGTSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKDIET 224
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDCLDELMSNEQLFFGLSQ LRKFPKETDRVLCHFCFKPKKVT V+ +N +KSQ
Sbjct: 225 INTRLDCLDELMSNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTEAVIGFENTRKSQ 284
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ISSIILLKTALDALP+LAKVLKDA+ FLLAN+Y+SVCEN++YASIRK+IGEVID+DVL
Sbjct: 285 NMISSIILLKTALDALPILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVL 344
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
HARVPFVARTQQCFA+K GIDG LDIARR+FCDTSEA+HNLA+KYREE LPNLKLPFNN
Sbjct: 345 HARVPFVARTQQCFALKAGIDGFLDIARRTFCDTSEAIHNLASKYREEFNLPNLKLPFNN 404
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
RQGF+ IP K++QGKLP+ F QVVKHG NIHCS+LELASLNVRNKSAAGEC+IRTE CL
Sbjct: 405 RQGFFFRIPQKEVQGKLPNKFTQVVKHGKNIHCSSLELASLNVRNKSAAGECFIRTETCL 464
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
EAL+DAIRED+S LTLLAEVLCLLDMIVNSFAHTISTKPVDRY+RP T++GPLAID GR
Sbjct: 465 EALMDAIREDISALTLLAEVLCLLDMIVNSFAHTISTKPVDRYSRPELTDSGPLAIDAGR 524
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPILESIHNDF+ N+IF+SEA NM++V GPNMSGKSTYLQQVCL+VILAQIGCYVPA F+
Sbjct: 525 HPILESIHNDFVSNSIFMSEATNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFA 584
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
TIRVVDRIFTRMGT+DNLESNSSTFMTEM+ETAF+MQNV+ RSLIVMDELGRATSSSDG
Sbjct: 585 TIRVVDRIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGL 644
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
A+AWSCCE+LLSLKAYT+FA+HM++L+ELATIYPNVK+LHFYV IR+NRLDFKFQL+DG
Sbjct: 645 AMAWSCCEYLLSLKAYTVFATHMDSLAELATIYPNVKVLHFYVDIRDNRLDFKFQLRDGT 704
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
HVPHYGLLLAEVAGLPSTVI+TAR IT RIT KE KR+E+NC ++ +I +Y AQRLI
Sbjct: 705 LHVPHYGLLLAEVAGLPSTVIDTARIITKRITDKENKRIELNCGKHHEIHRIYRVAQRLI 764
Query: 601 CLKYSNQDEESIRHALQNLKESFIDGRI 628
CLKYS Q E+SIR ALQNL ESF + R+
Sbjct: 765 CLKYSRQTEDSIRQALQNLNESFTEERL 792
>gi|356540540|ref|XP_003538746.1| PREDICTED: mutS protein homolog 4-like [Glycine max]
Length = 794
Score = 1098 bits (2839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/628 (82%), Positives = 571/628 (90%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNID+TS++NLEIIEP HS L GTSNKKRSLFHMLKTTKTIGG+RLLRANLLQPLKDIET
Sbjct: 165 MNIDSTSIQNLEIIEPFHSTLLGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLKDIET 224
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLDCLDELMSNEQLFFGL Q LRKFPKETDRVLCHFCFK KKVT++ L VD AKKSQ
Sbjct: 225 INARLDCLDELMSNEQLFFGLCQILRKFPKETDRVLCHFCFKAKKVTAEALAVDRAKKSQ 284
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L+SS+ILLKTALDALPLL+KVLKD +S LL+NIY+SVCENEKY IRKRIGEVIDEDVL
Sbjct: 285 VLVSSVILLKTALDALPLLSKVLKDVKSSLLSNIYKSVCENEKYDLIRKRIGEVIDEDVL 344
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
HARVPFVA TQQCFA+K GIDGLLDI+RR+FC+TSEA+HNLAN YRE+ KLPNLKL + N
Sbjct: 345 HARVPFVACTQQCFAVKAGIDGLLDISRRAFCETSEAIHNLANNYREDFKLPNLKLTYKN 404
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
RQGF+ IP K+IQGKLPS FIQVVKHGNNI CS+LELASLN RNKSAA ECY RTE+CL
Sbjct: 405 RQGFHFVIPQKNIQGKLPSKFIQVVKHGNNIRCSSLELASLNARNKSAAAECYTRTEVCL 464
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L+D IRE+VSVLTLLAEVLCLLDMIVNSFAH ISTKPVDRYTRP FTENGPLAID GR
Sbjct: 465 EELMDDIRENVSVLTLLAEVLCLLDMIVNSFAHMISTKPVDRYTRPEFTENGPLAIDSGR 524
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPILESIHNDF+ NNIF++EA+NM IV GPNMSGKSTYLQQVCLIVILAQ+GCYVPA FS
Sbjct: 525 HPILESIHNDFVANNIFLTEASNMAIVMGPNMSGKSTYLQQVCLIVILAQVGCYVPARFS 584
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
T+RVVDR+FTRMG VDNLESNSSTFMTEMKETAF+MQNVS+RSLIVMDELGRATSSSDGF
Sbjct: 585 TVRVVDRMFTRMGAVDNLESNSSTFMTEMKETAFIMQNVSQRSLIVMDELGRATSSSDGF 644
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
AIAWSCCEHLLSLK YT+FA+HMEN+SEL T+YPNVKILHF V ++NN LDFKFQLK+G
Sbjct: 645 AIAWSCCEHLLSLKTYTVFATHMENISELVTMYPNVKILHFDVELKNNHLDFKFQLKEGS 704
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
+ +PHYGLLLAEVAGLPS+V+ETAR ITSRI++KEVKRME+NCLQ+ IQ YH AQRL+
Sbjct: 705 KRIPHYGLLLAEVAGLPSSVVETARMITSRISEKEVKRMEVNCLQHHSIQKAYHVAQRLL 764
Query: 601 CLKYSNQDEESIRHALQNLKESFIDGRI 628
CLKY NQDE++IR AL+NLKES I ++
Sbjct: 765 CLKYCNQDEDTIRQALRNLKESCIKEKL 792
>gi|50083056|gb|AAT70180.1| MSH4 [Arabidopsis thaliana]
Length = 792
Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/628 (81%), Positives = 574/628 (91%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNIDATSV NLE+I+P H+AL GTSNKKRSLF M KTTKT GGTRLLRANLLQPLKDIET
Sbjct: 165 MNIDATSVENLELIDPFHNALLGTSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKDIET 224
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDCLDELMSNEQLFFGLSQ LRKFP+ETDRVLCHFCFKPKKVT V+ +N +KSQ
Sbjct: 225 INTRLDCLDELMSNEQLFFGLSQVLRKFPEETDRVLCHFCFKPKKVTEAVIGFENTRKSQ 284
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ISSIILLKTALDALP+LAKVLKDA+ FLLAN+Y+SVCEN++YASIRK+IGEVID+DVL
Sbjct: 285 NMISSIILLKTALDALPILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVL 344
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
HARVPFVARTQQCFA+K GIDG LDIARR+FCDTSEA+HNLA+KYREE LPNLKLPFNN
Sbjct: 345 HARVPFVARTQQCFALKAGIDGFLDIARRTFCDTSEAIHNLASKYREEFNLPNLKLPFNN 404
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
RQGF+ IP K++QGKLP+ F QVVKHG NIHCS+LELASLNVRNKSAAGEC+IRTE CL
Sbjct: 405 RQGFFFRIPQKEVQGKLPNKFTQVVKHGKNIHCSSLELASLNVRNKSAAGECFIRTETCL 464
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
EAL+DAIRED+S LTLLAEVLCLLDMIVNSFAHTISTKPVDRY+RP T++GPLAID GR
Sbjct: 465 EALMDAIREDISALTLLAEVLCLLDMIVNSFAHTISTKPVDRYSRPELTDSGPLAIDAGR 524
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPILESIHNDF+ N+IF+SEA NM++V GPNMSGKSTYLQQVCL+VILAQIGCYVPA F+
Sbjct: 525 HPILESIHNDFVSNSIFMSEATNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFA 584
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
TIRVVDRIFTRMGT+DNLESNSSTFMTEM+ETAF+MQNV+ RSLIVMDELGRATSSSDG
Sbjct: 585 TIRVVDRIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGL 644
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
A+AWSCCE+LLSLKAYT+FA+HM++L+ELATIYPNVK+LHFYV IR+NRLDFKFQL+DG
Sbjct: 645 AMAWSCCEYLLSLKAYTVFATHMDSLAELATIYPNVKVLHFYVDIRDNRLDFKFQLRDGT 704
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
HVPHYGLLLAEVAGLPSTVI+TAR IT RIT KE KR+E+NC ++ +I +Y AQRLI
Sbjct: 705 LHVPHYGLLLAEVAGLPSTVIDTARIITKRITDKENKRIELNCGKHHEIHRIYRVAQRLI 764
Query: 601 CLKYSNQDEESIRHALQNLKESFIDGRI 628
CLKYS Q E+SIR ALQNL ESF + R+
Sbjct: 765 CLKYSRQTEDSIRQALQNLNESFTEERL 792
>gi|357122809|ref|XP_003563107.1| PREDICTED: mutS protein homolog 4-like [Brachypodium distachyon]
Length = 726
Score = 1045 bits (2703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/628 (76%), Positives = 560/628 (89%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNID+TSV+ LEII+PLH+ LWGTSNKK+SLF MLKTTKT GG RLLRANLLQPLKDI+T
Sbjct: 92 MNIDSTSVQTLEIIDPLHTELWGTSNKKKSLFQMLKTTKTTGGCRLLRANLLQPLKDIQT 151
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDCLDELMSNE+LFFGL+Q LRKFPKE+D+VLCHFCFKPKK+T ++ N +KSQ
Sbjct: 152 INTRLDCLDELMSNEELFFGLTQGLRKFPKESDKVLCHFCFKPKKITDEIPKPANGRKSQ 211
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LIS II+LKTALDA+P L+KVLK A+SFLL NIY++VCEN KYA +RKRIG+VIDED +
Sbjct: 212 LLISDIIVLKTALDAIPFLSKVLKGAKSFLLQNIYQTVCENPKYARMRKRIGDVIDEDAV 271
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
H+R PF A TQQCFAIK GIDGLLD+ARRSFCDTSEA+HNLA KYREE +LPNLK+P+NN
Sbjct: 272 HSRAPFAACTQQCFAIKAGIDGLLDVARRSFCDTSEAIHNLATKYREECQLPNLKIPYNN 331
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
R GFY IP KDI GKLPS FIQVV+HG N+HCS+ ELASLN RNKSAA EC++RTE+CL
Sbjct: 332 RLGFYFIIPQKDITGKLPSKFIQVVRHGKNVHCSSFELASLNARNKSAAAECFLRTELCL 391
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L+ IRED+ +LTLLAEVLCLLDMIVNSFA+TISTKPVDRYTRP FT++GP+AI+ GR
Sbjct: 392 EGLISEIREDIGILTLLAEVLCLLDMIVNSFANTISTKPVDRYTRPEFTDDGPMAINAGR 451
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPILE +H DF+PNNIF+SEA+NMV+V GPNMSGKSTYLQQ+CLIVILAQ+GCYVPA F+
Sbjct: 452 HPILEGLHTDFVPNNIFLSEASNMVLVMGPNMSGKSTYLQQICLIVILAQVGCYVPAQFA 511
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
++RVVDRIFTR+GT DN+E+NSSTFMTEMKETAF+MQNVS +SL+V+DELGRATSSSDG
Sbjct: 512 SLRVVDRIFTRIGTGDNVENNSSTFMTEMKETAFIMQNVSSKSLVVVDELGRATSSSDGL 571
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
AIAWSCCEHLLSLKAYT+FA+HME LSELAT+YPNVK LHF V +RNNRLDFKFQLKDG
Sbjct: 572 AIAWSCCEHLLSLKAYTVFATHMEGLSELATMYPNVKTLHFEVNLRNNRLDFKFQLKDGL 631
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
R VPHYGLLLA VAGLP++V++TA +ITSRIT++E+ RM+ NC QY+ +QM Y AAQRLI
Sbjct: 632 RRVPHYGLLLARVAGLPASVVDTATNITSRITEQEMVRMDANCEQYRPLQMAYQAAQRLI 691
Query: 601 CLKYSNQDEESIRHALQNLKESFIDGRI 628
CLKYSNQ +E IR ALQ+LKES+ G++
Sbjct: 692 CLKYSNQGDEYIREALQDLKESYAAGKL 719
>gi|357482103|ref|XP_003611337.1| DNA mismatch repair protein mutS [Medicago truncatula]
gi|355512672|gb|AES94295.1| DNA mismatch repair protein mutS [Medicago truncatula]
Length = 800
Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/645 (77%), Positives = 558/645 (86%), Gaps = 33/645 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGG--------TRLLRANLL 52
MNIDATSV+NLEIIEP HSAL GTSNKKRSLFHMLKTTKTIGG LLRANLL
Sbjct: 172 MNIDATSVQNLEIIEPFHSALLGTSNKKRSLFHMLKTTKTIGGYAMIHTSFQALLRANLL 231
Query: 53 QPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFPKET---------DRVLCHFCFKP 103
QPLKDI+TIN RLDCLDELM+NEQLFF L QFLRKFPKET DRVLCHFCFKP
Sbjct: 232 QPLKDIKTINARLDCLDELMNNEQLFFALCQFLRKFPKETVTHTYCMVSDRVLCHFCFKP 291
Query: 104 KKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEK 163
KKVT + + VD +KKSQ L+SS+ILLKTALDAL KDA+S LL+NIY+SVCENEK
Sbjct: 292 KKVTIEAISVDRSKKSQVLVSSVILLKTALDAL-------KDAKSSLLSNIYKSVCENEK 344
Query: 164 YASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLAN 223
Y I+KRI E+IDEDVLHARVPFVA TQQCFA+K GIDGLLDI+R+SFC+TSEA+HNLAN
Sbjct: 345 YDLIKKRIEEIIDEDVLHARVPFVACTQQCFAVKAGIDGLLDISRKSFCETSEAIHNLAN 404
Query: 224 KYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNV 283
YRE+ KLPNLKL F NRQGF+ IP K+IQGKLP+ FIQVVKHGNNIHCSTLEL LN
Sbjct: 405 NYREDFKLPNLKLTFKNRQGFHFVIPQKNIQGKLPNKFIQVVKHGNNIHCSTLEL--LNA 462
Query: 284 RNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRY 343
RNKSAA ECY RTE+CLE L+DAIRE+VS LTLLAE+LCLLDMIVNSFAH ISTKPVD+Y
Sbjct: 463 RNKSAAAECYTRTEVCLEELMDAIRENVSALTLLAEILCLLDMIVNSFAHMISTKPVDQY 522
Query: 344 TRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVC 403
TRP FTENGP+AID GRHPILESIHNDF+ NNIF+SEA+NM IVTGPNMSGKSTYLQQVC
Sbjct: 523 TRPEFTENGPMAIDSGRHPILESIHNDFVANNIFLSEASNMAIVTGPNMSGKSTYLQQVC 582
Query: 404 LIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERS 463
LIVI+AQ+GCYVPA FST+RVVDR+FTRMG VDNLESNSSTFMTEMKETAF+MQNVSERS
Sbjct: 583 LIVIIAQVGCYVPARFSTLRVVDRVFTRMGAVDNLESNSSTFMTEMKETAFIMQNVSERS 642
Query: 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV 523
LIVMDELGRATSSSDGFAIAWSCCE YTIFA+HMEN++ELATIYPNVKILHF+V
Sbjct: 643 LIVMDELGRATSSSDGFAIAWSCCE-------YTIFATHMENIAELATIYPNVKILHFHV 695
Query: 524 VIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINC 583
++NN L+FKFQLK+GP+H+PHYGLLLAEVAGLP++VIETAR IT RI++KE KRM++NC
Sbjct: 696 ELKNNHLEFKFQLKEGPKHIPHYGLLLAEVAGLPTSVIETARMITLRISEKEKKRMDVNC 755
Query: 584 LQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFIDGRI 628
LQ IQ YH AQRL+CLKYSNQDE++IR AL+NLKE I ++
Sbjct: 756 LQNHSIQSAYHVAQRLLCLKYSNQDEDTIRQALRNLKEHCIKQKL 800
>gi|400202053|gb|AFP73610.1| mutS-like protein 4 [Hordeum vulgare subsp. vulgare]
Length = 720
Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/628 (76%), Positives = 559/628 (89%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNID+TSV+ LEII+PLH+ LWGTSNKK+SLF MLKTTKT GG+RLLRANLLQPLKDI T
Sbjct: 92 MNIDSTSVQTLEIIDPLHTELWGTSNKKKSLFQMLKTTKTTGGSRLLRANLLQPLKDIHT 151
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDCLDEL+SNE+LFFGL+Q LRKFPKE+D+VLCHFCFKPKKVT +VL + +KSQ
Sbjct: 152 INTRLDCLDELVSNEELFFGLTQGLRKFPKESDKVLCHFCFKPKKVTDEVLKPADGRKSQ 211
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LIS II+LKTALDA+P L+KVLK A SFLL NIY+++CEN KY S+RKRI EVIDEDV+
Sbjct: 212 LLISDIIVLKTALDAIPFLSKVLKGANSFLLQNIYQTICENPKYGSMRKRIREVIDEDVI 271
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
H+R PFVA TQQCFAIK G+DGLLD+ARRSFCDTSEA+HNLA KYREE LPNLK+P+NN
Sbjct: 272 HSRAPFVACTQQCFAIKPGVDGLLDVARRSFCDTSEAIHNLATKYREEFTLPNLKIPYNN 331
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
R GFY IP +DI KLP+ FIQVV+HG N+HCS+ ELASLNVRNKSAA EC++RTE+CL
Sbjct: 332 RLGFYFIIPQRDITEKLPNKFIQVVRHGKNVHCSSFELASLNVRNKSAAAECFLRTELCL 391
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L+ IRED+ +LTLLAEVLCLLDMIVNSFA+TISTKPVDRYTRP FT++GP+AI+ GR
Sbjct: 392 EGLISEIREDICILTLLAEVLCLLDMIVNSFAYTISTKPVDRYTRPEFTDDGPMAINAGR 451
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPILES+H DF+PNNIF+SEA+NMV+V GPNMSGKSTYLQQ+CLIVILAQ+GCYVPA F+
Sbjct: 452 HPILESLHTDFVPNNIFLSEASNMVLVMGPNMSGKSTYLQQICLIVILAQVGCYVPAQFA 511
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
++RVVDRIFTR+GT DN+E+NSSTFMTEMKETAF+MQNVS RSL+V+DELGRATSSSDG
Sbjct: 512 SLRVVDRIFTRIGTGDNVENNSSTFMTEMKETAFIMQNVSSRSLVVVDELGRATSSSDGL 571
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
AIAWSCCEHLLSLK YT+FA+HME LSELAT+YPNVK+LHF V +RN+RLDFKF LKDG
Sbjct: 572 AIAWSCCEHLLSLKGYTVFATHMEGLSELATMYPNVKVLHFEVDLRNSRLDFKFLLKDGL 631
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
R VPHYGLLLA VAGLP++VI+TA SITSRIT++E+ RM+ NC+QYK ++M Y AAQRLI
Sbjct: 632 RRVPHYGLLLARVAGLPASVIDTATSITSRITEQEMVRMDANCVQYKPLRMAYQAAQRLI 691
Query: 601 CLKYSNQDEESIRHALQNLKESFIDGRI 628
CLKYSNQ ++ R ALQ+LKES+ G +
Sbjct: 692 CLKYSNQGDDYNREALQDLKESYAAGNL 719
>gi|218199622|gb|EEC82049.1| hypothetical protein OsI_26026 [Oryza sativa Indica Group]
Length = 798
Score = 1019 bits (2634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/628 (76%), Positives = 563/628 (89%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNID+TSV+ LEII+PLH+ LWGTSNKK+SLF MLKTTKT GGTRLLRANLLQPLKDI+T
Sbjct: 170 MNIDSTSVQTLEIIDPLHTELWGTSNKKKSLFQMLKTTKTTGGTRLLRANLLQPLKDIQT 229
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDCLDELMSNE+LFFGL+Q LRKFPKE+D+VLCHFCFKPKK T +VL N +KSQ
Sbjct: 230 INTRLDCLDELMSNEELFFGLTQGLRKFPKESDKVLCHFCFKPKKDTDEVLKPANGRKSQ 289
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LIS II+LKTALDA+P L+KVL+ A+SFLL NIY+++CEN KYAS+RKRIG+VIDEDV+
Sbjct: 290 GLISDIIVLKTALDAIPFLSKVLRGAKSFLLRNIYQTICENPKYASMRKRIGDVIDEDVV 349
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
H+R PFV TQQCFAIK GIDGLLD+ARRSFCDTSEA+HNLANKYRE+ KLPNLK+P+NN
Sbjct: 350 HSRAPFVTCTQQCFAIKAGIDGLLDVARRSFCDTSEAIHNLANKYREDFKLPNLKIPYNN 409
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
R GFY +P KDI +LP+ FIQVV+HG N+HCS+LELASLN RNKSAA EC++RTE+CL
Sbjct: 410 RLGFYFIVPQKDITERLPNKFIQVVRHGKNVHCSSLELASLNARNKSAAAECFLRTELCL 469
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L++ IRED+ +LTLLAEVLCLLDM+VNSFA TISTKPVDRYTRP FT++GP+AI+ GR
Sbjct: 470 EGLINEIREDIGILTLLAEVLCLLDMLVNSFAFTISTKPVDRYTRPEFTDDGPMAINAGR 529
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPILES+HNDF+PNN+F+SEA+NMV+V GPNMSGKSTYLQQ+CLIVILAQIGCYVPA F+
Sbjct: 530 HPILESLHNDFVPNNLFLSEASNMVLVMGPNMSGKSTYLQQICLIVILAQIGCYVPAQFA 589
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
++RVVDR+FTR+GT DN+E+NSSTFMTEMKETAF+MQNVS +SLIV+DELGRATSSSDG
Sbjct: 590 SLRVVDRVFTRIGTGDNVENNSSTFMTEMKETAFIMQNVSSKSLIVVDELGRATSSSDGL 649
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
AIAWSCCE+LLS KAYT+FA+HME+LSELATIYPNVKILHF V +RN+RLDFKF+LKDG
Sbjct: 650 AIAWSCCEYLLSTKAYTVFATHMESLSELATIYPNVKILHFEVDLRNDRLDFKFRLKDGV 709
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
R VPHYGLLLA+VAGLPS+VI+TA SITSRIT++E+ R + NC QY+ +QM Y QRLI
Sbjct: 710 RKVPHYGLLLAKVAGLPSSVIDTAASITSRITEQEMVRKDDNCEQYRSLQMAYQVTQRLI 769
Query: 601 CLKYSNQDEESIRHALQNLKESFIDGRI 628
CLK SNQ ++ IR ALQNLK+ + GR+
Sbjct: 770 CLKQSNQGDDYIREALQNLKDGYAAGRL 797
>gi|222637052|gb|EEE67184.1| hypothetical protein OsJ_24276 [Oryza sativa Japonica Group]
Length = 701
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/628 (76%), Positives = 563/628 (89%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNID+TSV+ LEII+PLH+ LWGTSNKK+SLF MLKTTKT GGTRLLRANLLQPLKDI+T
Sbjct: 73 MNIDSTSVQTLEIIDPLHTELWGTSNKKKSLFQMLKTTKTTGGTRLLRANLLQPLKDIQT 132
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDCLDELMSNE+LFFGL+Q LRKFPKE+D+VLCHFCFKPKK T +VL N +KSQ
Sbjct: 133 INTRLDCLDELMSNEELFFGLTQGLRKFPKESDKVLCHFCFKPKKDTDEVLKPANGRKSQ 192
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LIS II+LKTALDA+P L+KVL+ A+SFLL NIY+++CEN KYAS+RKRIG+VIDEDV+
Sbjct: 193 GLISDIIVLKTALDAIPFLSKVLRGAKSFLLRNIYQTICENPKYASMRKRIGDVIDEDVV 252
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
H+R PFV TQQCFAIK GIDGLLD+ARRSFCDTSEA+HNLANKYRE+ KLPNLK+P+NN
Sbjct: 253 HSRAPFVTCTQQCFAIKAGIDGLLDVARRSFCDTSEAIHNLANKYREDFKLPNLKIPYNN 312
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
R GFY +P KDI +LP+ FIQVV+HG N+HCS+LELASLN RNKSAA EC++RTE+CL
Sbjct: 313 RLGFYFIVPQKDITERLPNKFIQVVRHGKNVHCSSLELASLNARNKSAAAECFLRTELCL 372
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L++ IRED+ +LTLLAEVLCLLDM+VNSFA TISTKPVDRYTRP FT++GP+AI+ GR
Sbjct: 373 EGLINEIREDIGILTLLAEVLCLLDMLVNSFAFTISTKPVDRYTRPEFTDDGPMAINAGR 432
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPILES+HNDF+PNN+F+SEA+NMV+V GPNMSGKSTYLQQ+CLIVILAQIGCYVPA F+
Sbjct: 433 HPILESLHNDFVPNNLFLSEASNMVLVMGPNMSGKSTYLQQICLIVILAQIGCYVPAQFA 492
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
++RVVDR+FTR+GT DN+E+NSSTFMTEMKETAF+MQNVS +SLIV+DELGRATSSSDG
Sbjct: 493 SLRVVDRVFTRIGTGDNVENNSSTFMTEMKETAFIMQNVSSKSLIVVDELGRATSSSDGL 552
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
AIAWSCCE+LLS KAYT+FA+HME+LSELATIYPNVKILHF V +RN+RLDFKF+LKDG
Sbjct: 553 AIAWSCCEYLLSTKAYTVFATHMESLSELATIYPNVKILHFEVDLRNDRLDFKFRLKDGV 612
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
R VPHYGLLLA+VAGLPS+VI+TA SITSRIT++E+ R + NC QY+ +QM Y QRLI
Sbjct: 613 RKVPHYGLLLAKVAGLPSSVIDTAASITSRITEQEMVRKDDNCEQYRSLQMAYQVTQRLI 672
Query: 601 CLKYSNQDEESIRHALQNLKESFIDGRI 628
CLK SNQ ++ IR ALQNLK+ + GR+
Sbjct: 673 CLKQSNQGDDYIREALQNLKDGYAAGRL 700
>gi|255579639|ref|XP_002530660.1| DNA mismatch repair protein mutS, putative [Ricinus communis]
gi|223529793|gb|EEF31729.1| DNA mismatch repair protein mutS, putative [Ricinus communis]
Length = 553
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/536 (85%), Positives = 510/536 (95%), Gaps = 1/536 (0%)
Query: 93 DRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLA 152
DRVLCHFCFKPKKVT++VL DNA+KSQ LISSIILLKTALDALPLL+KVLKDA+SFLLA
Sbjct: 19 DRVLCHFCFKPKKVTNEVLG-DNARKSQVLISSIILLKTALDALPLLSKVLKDAKSFLLA 77
Query: 153 NIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFC 212
N+Y+++CENEKYASIR+RIGEVIDEDVLHARVPFVARTQQCFA+K GIDGLLDIARR+FC
Sbjct: 78 NVYKTICENEKYASIRRRIGEVIDEDVLHARVPFVARTQQCFAVKAGIDGLLDIARRTFC 137
Query: 213 DTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIH 272
DTSE +HNLANKYREE K+PNLKLPFN+RQGFY SIPHKDIQGKLPS FIQV+KHGNNIH
Sbjct: 138 DTSEGIHNLANKYREEFKMPNLKLPFNSRQGFYFSIPHKDIQGKLPSKFIQVLKHGNNIH 197
Query: 273 CSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFA 332
CSTLELASLNVRN+SAA ECYIRTE+CLEAL+DAIRED S LTLLAEVLCLLDM+VNSFA
Sbjct: 198 CSTLELASLNVRNRSAAEECYIRTEVCLEALLDAIREDASALTLLAEVLCLLDMLVNSFA 257
Query: 333 HTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNM 392
HTISTK VDRYTRP FT +GPLAID GRHPILESIHNDF+PNN+F+SEA+NMVIV GPNM
Sbjct: 258 HTISTKLVDRYTRPEFTSSGPLAIDAGRHPILESIHNDFVPNNLFVSEASNMVIVMGPNM 317
Query: 393 SGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKET 452
SGKSTYLQQVCLIVILAQIGCYVPA F TIR+VDRIFTRMG+VDNLESNSSTFMTEMKET
Sbjct: 318 SGKSTYLQQVCLIVILAQIGCYVPARFLTIRIVDRIFTRMGSVDNLESNSSTFMTEMKET 377
Query: 453 AFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512
AF+MQNVS+RSLI+MDELGRATSSSDGF+IAWSCCEHLLSLKAYTIFA+HMENLSELATI
Sbjct: 378 AFIMQNVSQRSLIIMDELGRATSSSDGFSIAWSCCEHLLSLKAYTIFATHMENLSELATI 437
Query: 513 YPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRIT 572
YPNVK+LH V ++NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPS+VIETARSITS+I
Sbjct: 438 YPNVKLLHLDVTVKNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSSVIETARSITSKIK 497
Query: 573 KKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFIDGRI 628
+KE+ +ME++C QY+Q+QM+YH AQRLICLKYS+QDE+SIR ALQNLKES++DG+I
Sbjct: 498 EKEITQMEVHCHQYRQLQMIYHVAQRLICLKYSSQDEDSIRQALQNLKESYMDGKI 553
>gi|326490065|dbj|BAJ94106.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 630
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/539 (78%), Positives = 486/539 (90%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNID+TSV+ LEII+PLH+ LWGTSNKK+SLF MLKTTKT GG+RLLRANLLQPLKDI T
Sbjct: 92 MNIDSTSVQTLEIIDPLHTELWGTSNKKKSLFQMLKTTKTTGGSRLLRANLLQPLKDIHT 151
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDCLDEL+SNE+LFFGL+Q LRKFPKE+D+VLCHFCFKPKKVT +VL N +KSQ
Sbjct: 152 INTRLDCLDELVSNEELFFGLTQGLRKFPKESDKVLCHFCFKPKKVTDEVLKPANGRKSQ 211
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LIS II+LKTALDA+P L+KVLK A SFLL NIY+++CEN KY S+RKRI EVIDEDV+
Sbjct: 212 LLISDIIVLKTALDAIPFLSKVLKGANSFLLQNIYQTICENPKYGSMRKRIREVIDEDVI 271
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
H+R PFVA TQQCFAIK G+DGLLD+ARRSFCDTSEA+HNLA KYREE LPNLK+P+NN
Sbjct: 272 HSRAPFVACTQQCFAIKPGVDGLLDVARRSFCDTSEAIHNLATKYREEFTLPNLKIPYNN 331
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
R GFY IP +DI KLP+ FIQVV+HG N+HCS+ ELASLNVRNKSAA EC++RTE+CL
Sbjct: 332 RLGFYFIIPQRDITEKLPNKFIQVVRHGKNVHCSSFELASLNVRNKSAAAECFLRTELCL 391
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L+ IRED+ +LTLLAEVLCLLDMIVNSFA+TISTKPVDRYTRP FT++GP+AI+ GR
Sbjct: 392 EGLISEIREDICILTLLAEVLCLLDMIVNSFAYTISTKPVDRYTRPEFTDDGPMAINAGR 451
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPILES+H DF+PNNIF+SEA+NMV+V GPNMSGKSTYLQQ+CLIVILAQ+GCYVPA F+
Sbjct: 452 HPILESLHTDFVPNNIFLSEASNMVLVMGPNMSGKSTYLQQICLIVILAQVGCYVPAQFA 511
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
++RVVDRIFTR+GT DN+E+NSSTFMTEMKETAF+MQNVS RSL+V+DELGRATSSSDG
Sbjct: 512 SLRVVDRIFTRIGTGDNVENNSSTFMTEMKETAFIMQNVSSRSLVVVDELGRATSSSDGL 571
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
AIAWSCCEHLLSLK YT+FA+HME LSELAT+YPNVK+LHF V +RN+RLDFKF LKDG
Sbjct: 572 AIAWSCCEHLLSLKGYTVFATHMEGLSELATMYPNVKVLHFEVDLRNSRLDFKFLLKDG 630
>gi|224137876|ref|XP_002326462.1| predicted protein [Populus trichocarpa]
gi|222833784|gb|EEE72261.1| predicted protein [Populus trichocarpa]
Length = 700
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/461 (82%), Positives = 420/461 (91%), Gaps = 14/461 (3%)
Query: 168 RKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYRE 227
++ +GEVIDEDVLHARVPFVARTQQCFA+K GIDGLLDIARR+FCDTSEA+HNLANKYRE
Sbjct: 254 KETVGEVIDEDVLHARVPFVARTQQCFAVKAGIDGLLDIARRTFCDTSEAIHNLANKYRE 313
Query: 228 ELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKS 287
E KLPNLKLPFNNRQGFY SIP KDI+GKLPS FIQV GN LNVRNKS
Sbjct: 314 EFKLPNLKLPFNNRQGFYFSIPQKDIRGKLPSKFIQV---GN-----------LNVRNKS 359
Query: 288 AAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
AA ECYIRTE+CLEAL+++IRED S LTLLAEVLCLLDMI+NSFA+TISTKPVDRYTRP
Sbjct: 360 AAAECYIRTEVCLEALLNSIREDASALTLLAEVLCLLDMIINSFAYTISTKPVDRYTRPE 419
Query: 348 FTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
FT NGPLAID GRHPILESIHNDF+PNNIF+SEA+NMVIV GPNMSGKSTYLQQVCLIVI
Sbjct: 420 FTSNGPLAIDAGRHPILESIHNDFVPNNIFLSEASNMVIVMGPNMSGKSTYLQQVCLIVI 479
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
LAQIGCYVPA FSTIRVVDRIFTRMG+VDNLESNSSTFMTEMKETAF+MQNVS+ SLI M
Sbjct: 480 LAQIGCYVPARFSTIRVVDRIFTRMGSVDNLESNSSTFMTEMKETAFIMQNVSQSSLIFM 539
Query: 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
DELGRATSS+DGFAIAWSCCEHLLSLKAY+IFA+HMENLSELATIYPNV+I+HF+V I++
Sbjct: 540 DELGRATSSADGFAIAWSCCEHLLSLKAYSIFATHMENLSELATIYPNVRIVHFHVDIKS 599
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
NRLDFKFQL+DGPRHVPHYGLLLAEVAGLPS+VIE ARSITS+IT+K+ K+ E+NC QY
Sbjct: 600 NRLDFKFQLEDGPRHVPHYGLLLAEVAGLPSSVIEMARSITSKITEKQTKQTEVNCRQYH 659
Query: 588 QIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFIDGRI 628
Q+QM+Y AQRLICLK+SNQDE+SIR ALQNLKE +I+G +
Sbjct: 660 QLQMVYRVAQRLICLKHSNQDEDSIRQALQNLKEQYINGTL 700
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/92 (89%), Positives = 87/92 (94%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+IDATSV+NLEIIEP HS L GT++KKRSLFHMLKTTKT GGTRLLRANLLQPLKDI+T
Sbjct: 165 MSIDATSVQNLEIIEPFHSTLLGTTSKKRSLFHMLKTTKTTGGTRLLRANLLQPLKDIKT 224
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKET 92
INTRLDCLDELMSNEQLFFGLSQ LRKFPKET
Sbjct: 225 INTRLDCLDELMSNEQLFFGLSQALRKFPKET 256
>gi|168050616|ref|XP_001777754.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670855|gb|EDQ57416.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 786
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/629 (57%), Positives = 473/629 (75%), Gaps = 5/629 (0%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNID TSV+NLE++E LH + G K+ LF MLKTTKT GGTRLLRANLLQPLKD T
Sbjct: 161 MNIDGTSVQNLELVESLHIQV-GPQKKRGCLFEMLKTTKTAGGTRLLRANLLQPLKDKNT 219
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDCLDEL S++++FFG+S+ L FPK+ DR+LC FCFK K V++ + Q
Sbjct: 220 INTRLDCLDELTSDDKIFFGISRALEMFPKDIDRILCSFCFKAK-VSNDSTTKSTTRAGQ 278
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++S+IILLK ALD LP L + L+ A+ LL NI + +C N + + +RI EVI+ED++
Sbjct: 279 FMVSNIILLKEALDHLPTLQEALQGAKCSLLRNI-KDICANPSFRLLLQRIEEVINEDIV 337
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
H+R F++RTQQCFA+K GIDG LD+AR F TSEA+H LA +YREE LPNLK+PFNN
Sbjct: 338 HSRALFLSRTQQCFAVKSGIDGYLDVAREVFSSTSEAIHELARRYREEFNLPNLKMPFNN 397
Query: 241 RQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+GFY+S P KD+ Q +PS F QV+K I CST EL SLN RN AA ECY RT +C
Sbjct: 398 NRGFYISFPEKDLKQTSIPSIFNQVIKKEKIICCSTSELTSLNDRNMEAAAECYKRTSLC 457
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L L+ IRED+ +LT L+E L LLDM+VNSFA+ IST P + Y RP FTE GP+AI+ G
Sbjct: 458 LGELITRIREDLRLLTSLSESLALLDMMVNSFANLISTNPEESYIRPEFTETGPVAIEKG 517
Query: 360 RHPILES-IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP+LES I +F+ NN F+SEA+N +IVTGPNMSGKSTYL+QV LI I+A IGCYVPA
Sbjct: 518 RHPVLESTIPGEFVANNAFLSEASNTMIVTGPNMSGKSTYLRQVVLITIMAHIGCYVPAR 577
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
F++ RVVD IFTR+GT DN+E NSSTFMTEM+ETA+++ N++ RSL+V+DELGRATS+ D
Sbjct: 578 FASFRVVDNIFTRIGTSDNIELNSSTFMTEMRETAYLLNNLTSRSLVVVDELGRATSTGD 637
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
GFAIAWSCCE++LS KAY +FA+HM+ L+EL+++YPNV++ +F I NNRLDFKF L++
Sbjct: 638 GFAIAWSCCEYMLSFKAYVLFATHMQRLTELSSVYPNVRVCYFDASILNNRLDFKFLLRE 697
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQR 598
G +V HYG+ LAE AG+P++VI A+ I ++I KE + I +Y ++ YH AQ+
Sbjct: 698 GCTNVAHYGIRLAEFAGIPTSVINDAKCIAAKIDAKEKNNVSIAHAKYGHLRKDYHIAQK 757
Query: 599 LICLKYSNQDEESIRHALQNLKESFIDGR 627
L+CL+YSN + + +R L+NL++ +++ R
Sbjct: 758 LLCLQYSNLNNDILRAYLKNLQQCYVENR 786
>gi|302800038|ref|XP_002981777.1| hypothetical protein SELMODRAFT_115028 [Selaginella moellendorffii]
gi|300150609|gb|EFJ17259.1| hypothetical protein SELMODRAFT_115028 [Selaginella moellendorffii]
Length = 785
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/629 (56%), Positives = 461/629 (73%), Gaps = 11/629 (1%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+ID TSV++L++IE A K SLF +L TK+ GG RLLRANLLQPL+D++T
Sbjct: 164 MSIDITSVQSLQVIESSALAPINKLKKCGSLFGILSKTKSTGGARLLRANLLQPLRDMDT 223
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDC+DEL S E LFFGL+Q L++FPK+ DRV+ HFCFKPKK+ + + +SQ
Sbjct: 224 INTRLDCMDELTSKENLFFGLNQVLQRFPKDLDRVISHFCFKPKKLG------EGSSRSQ 277
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++++S+ILLK A++ LP L +VL+DA+S + ++VC + ++ I++RI E I EDV
Sbjct: 278 SVVASVILLKEAMELLPALLQVLQDAESTFFQRVKQTVCMRQCFSFIKQRIQETISEDVF 337
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+AR+PFVARTQQCFA+K GIDG LD+AR+ FCDTSEA+H LA YRE +LP+LKL +N
Sbjct: 338 NARMPFVARTQQCFAVKPGIDGFLDVARKIFCDTSEAIHCLAKSYRENFQLPSLKLLYNK 397
Query: 241 RQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+GF +SIP + Q LP TFIQVVKH +HCST+EL SLN RNK AA +CY RTE C
Sbjct: 398 SKGFSISIPVAEFEQAGLPKTFIQVVKHAKYVHCSTIELISLNTRNKKAADDCYARTEHC 457
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
LEAL IRE V L LL+E L L+DMI +FA +S KP Y RP FTE+GP+AI+ G
Sbjct: 458 LEALTQDIREHVPSLMLLSESLSLIDMI-TAFASMVSLKPAGSYVRPEFTEDGPIAIETG 516
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPILES+ DF+ NN F+SEA+NMVIVTGPNMSGKSTYL QV LI ILA IGCYVPA
Sbjct: 517 RHPILESLPSGDFVANNTFLSEASNMVIVTGPNMSGKSTYLHQVALITILAHIGCYVPAQ 576
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
F++ RVVDR+FTR+G D++E NSSTFM EM+E A+ +QNV+ RSLI++DELGR+TSS D
Sbjct: 577 FASFRVVDRLFTRIGEADDMEMNSSTFMREMREAAYFVQNVTPRSLILIDELGRSTSSYD 636
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G A+AWS E+LLSLKAY IFA+HM+ L EL+TIYPNVK+ F V I NNRL+F+F L++
Sbjct: 637 GLALAWSFSEYLLSLKAYVIFATHMQKLGELSTIYPNVKVSFFAVNINNNRLNFEFTLRE 696
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQY--KQIQMLYHAA 596
G + HYGLLL+ V GLP +VI+ AR + + +E K +E L + +Q YH A
Sbjct: 697 GCTSIAHYGLLLSNVVGLPPSVIQGARRVIDALESRESKALETYRLSSTGRSLQKDYHVA 756
Query: 597 QRLICLKYSNQDEESIRHALQNLKESFID 625
QRL+ LK + + + +R L L++S ++
Sbjct: 757 QRLLTLKQAKMEPDVLRGYLAKLQQSCLE 785
>gi|302768297|ref|XP_002967568.1| hypothetical protein SELMODRAFT_88599 [Selaginella moellendorffii]
gi|300164306|gb|EFJ30915.1| hypothetical protein SELMODRAFT_88599 [Selaginella moellendorffii]
Length = 783
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/629 (56%), Positives = 461/629 (73%), Gaps = 11/629 (1%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+ID TSV++L++IE A K SLF +L TK+ GG RLLRANLLQPL+D++T
Sbjct: 162 MSIDITSVQSLQVIESSALAPINKLKKCGSLFGILSKTKSTGGARLLRANLLQPLRDMDT 221
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDC+DEL S E LFFGL+Q L++FPK+ DRV+ HFCFKPKK+ + + +SQ
Sbjct: 222 INTRLDCMDELTSKENLFFGLNQVLQRFPKDLDRVISHFCFKPKKLG------EGSSRSQ 275
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++++S++LLK A++ LP L +VL+DA+S + ++VC + ++ I++RI E I EDV
Sbjct: 276 SVVASVVLLKEAMELLPALLQVLQDAESTFFQRVKQTVCMRQCFSFIKQRIQETISEDVF 335
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+AR+PFVARTQQCFA+K GIDG LD+AR+ FCDTSEA+H LA YRE +LP+LKL +N
Sbjct: 336 NARMPFVARTQQCFAVKPGIDGFLDVARKIFCDTSEAIHCLAKSYRENFQLPSLKLLYNK 395
Query: 241 RQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+GF +SIP + Q LP TFIQVVKH +HCST+EL SLN RNK AA +CY RTE C
Sbjct: 396 SKGFSISIPMAEFEQAGLPKTFIQVVKHAKYVHCSTIELISLNTRNKKAADDCYARTEHC 455
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
LEAL IRE V L LL+E L L+DMI +FA +S KP Y RP FTE+GP+AI+ G
Sbjct: 456 LEALTQDIREHVPSLMLLSESLSLIDMI-TAFASMVSLKPAGSYVRPEFTEDGPIAIETG 514
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPILES+ DF+ NN F+SEA+NMVIVTGPNMSGKSTYL QV LI ILA IGCYVPA
Sbjct: 515 RHPILESLPSGDFVANNTFLSEASNMVIVTGPNMSGKSTYLHQVALITILAHIGCYVPAQ 574
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
F++ RVVDR+FTR+G D++E NSS+FM EM+E A+ +QNV+ RSLI++DELGR+TSS D
Sbjct: 575 FASFRVVDRLFTRIGEADDMEMNSSSFMREMREAAYFVQNVTPRSLILIDELGRSTSSYD 634
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G A+AWS E+LLSLKAY IFA+HM+ L EL+TIYPNVK+ F V I NNRL+F+F L++
Sbjct: 635 GLALAWSFSEYLLSLKAYVIFATHMQKLGELSTIYPNVKVSFFAVNINNNRLNFEFTLRE 694
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQY--KQIQMLYHAA 596
G + HYGLLL+ V GLP +VI+ AR + + +E K +E L + +Q YH A
Sbjct: 695 GCTSIAHYGLLLSNVVGLPPSVIQGARRVIDALESRESKALETYRLSSTGRSLQKDYHVA 754
Query: 597 QRLICLKYSNQDEESIRHALQNLKESFID 625
QRL+ LK + + + +R L L++S ++
Sbjct: 755 QRLLTLKQAKMEPDVLRGYLAKLQQSCLE 783
>gi|449469434|ref|XP_004152425.1| PREDICTED: DNA mismatch repair protein MSH4-like [Cucumis sativus]
Length = 601
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/355 (82%), Positives = 324/355 (91%), Gaps = 8/355 (2%)
Query: 274 STLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAH 333
STLELASLNVRNKSAAGECYIRTEICLE LVDAIREDVS+LTLLAEVLCLLDMIVNSFAH
Sbjct: 255 STLELASLNVRNKSAAGECYIRTEICLEGLVDAIREDVSMLTLLAEVLCLLDMIVNSFAH 314
Query: 334 TISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMS 393
TISTKPVDRYTRP+FT G ILESIHNDF+ N+IF+SEA+NM+IV GPNMS
Sbjct: 315 TISTKPVDRYTRPNFT--------GNHTTILESIHNDFVANSIFLSEASNMIIVMGPNMS 366
Query: 394 GKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETA 453
GKSTYLQQ+CL+VILAQIGCYVPAHFST+RVVDRIFTRMGT D+LESNSSTFMTEMKETA
Sbjct: 367 GKSTYLQQMCLLVILAQIGCYVPAHFSTLRVVDRIFTRMGTDDSLESNSSTFMTEMKETA 426
Query: 454 FVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIY 513
FVMQNVS+RSL+V+DELGRATSSSDGFAIAWSCCE+LL+LKAYTIFA+HME LSELATIY
Sbjct: 427 FVMQNVSQRSLVVVDELGRATSSSDGFAIAWSCCEYLLTLKAYTIFATHMEGLSELATIY 486
Query: 514 PNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
PNVKILHF+V IRN+RLDFKFQLKDG RHVPHYGLLLAEVAGLPS+VIETAR ITSRI +
Sbjct: 487 PNVKILHFHVDIRNHRLDFKFQLKDGIRHVPHYGLLLAEVAGLPSSVIETARDITSRIKE 546
Query: 574 KEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFIDGRI 628
KE +RMEIN LQY I+M Y+ AQRLICLKYS+ DE+S+R AL+NLKE +I GR+
Sbjct: 547 KEERRMEINHLQYHPIRMTYNVAQRLICLKYSSHDEDSVREALRNLKEGYISGRL 601
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/96 (86%), Positives = 89/96 (92%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
++IDATSV+NLEIIEPLHS LWGTSNKKRSL++MLKTTKTIGG+RLL ANLLQPLKDIET
Sbjct: 162 VSIDATSVQNLEIIEPLHSNLWGTSNKKRSLYNMLKTTKTIGGSRLLPANLLQPLKDIET 221
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVL 96
IN RLDCLDELMSNEQLFFGLSQ LRKFPKET L
Sbjct: 222 INARLDCLDELMSNEQLFFGLSQALRKFPKETGSTL 257
>gi|359495972|ref|XP_002262998.2| PREDICTED: mutS protein homolog 4-like, partial [Vitis vinifera]
Length = 456
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 250/280 (89%), Positives = 266/280 (95%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNIDATSV+NLEIIEPLHS+LWGTSNKKRSLFHMLKTTKT GGTRLLRANLLQPLKDIET
Sbjct: 177 MNIDATSVQNLEIIEPLHSSLWGTSNKKRSLFHMLKTTKTTGGTRLLRANLLQPLKDIET 236
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLDCLDELMSNEQLFFGLSQ LRKFPKETDRVLCHFCFKPKKVT +VL V+ A+K+Q
Sbjct: 237 INARLDCLDELMSNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTKEVLGVEYARKNQ 296
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LISSIILLKTALDALPLL+KVLKDA+SFLLAN+Y+SVC NE YASIRKRIGEVIDEDVL
Sbjct: 297 MLISSIILLKTALDALPLLSKVLKDAKSFLLANVYKSVCANETYASIRKRIGEVIDEDVL 356
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
HARVPFVARTQQCFA+K GIDGLLDIARRSFCDTSEA+HNLANKYRE+ KLPNLKLPFNN
Sbjct: 357 HARVPFVARTQQCFAVKAGIDGLLDIARRSFCDTSEAIHNLANKYREDFKLPNLKLPFNN 416
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS 280
RQGFY +IP KDIQGKLPS FIQV++HGNNIHCSTLELAS
Sbjct: 417 RQGFYFTIPQKDIQGKLPSKFIQVLRHGNNIHCSTLELAS 456
>gi|297744393|emb|CBI37367.3| unnamed protein product [Vitis vinifera]
Length = 280
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 250/280 (89%), Positives = 266/280 (95%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNIDATSV+NLEIIEPLHS+LWGTSNKKRSLFHMLKTTKT GGTRLLRANLLQPLKDIET
Sbjct: 1 MNIDATSVQNLEIIEPLHSSLWGTSNKKRSLFHMLKTTKTTGGTRLLRANLLQPLKDIET 60
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLDCLDELMSNEQLFFGLSQ LRKFPKETDRVLCHFCFKPKKVT +VL V+ A+K+Q
Sbjct: 61 INARLDCLDELMSNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTKEVLGVEYARKNQ 120
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LISSIILLKTALDALPLL+KVLKDA+SFLLAN+Y+SVC NE YASIRKRIGEVIDEDVL
Sbjct: 121 MLISSIILLKTALDALPLLSKVLKDAKSFLLANVYKSVCANETYASIRKRIGEVIDEDVL 180
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
HARVPFVARTQQCFA+K GIDGLLDIARRSFCDTSEA+HNLANKYRE+ KLPNLKLPFNN
Sbjct: 181 HARVPFVARTQQCFAVKAGIDGLLDIARRSFCDTSEAIHNLANKYREDFKLPNLKLPFNN 240
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS 280
RQGFY +IP KDIQGKLPS FIQV++HGNNIHCSTLELAS
Sbjct: 241 RQGFYFTIPQKDIQGKLPSKFIQVLRHGNNIHCSTLELAS 280
>gi|414590258|tpg|DAA40829.1| TPA: hypothetical protein ZEAMMB73_277658 [Zea mays]
Length = 554
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 227/307 (73%), Positives = 269/307 (87%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+ID+TSV+ LEII+PLH+ LWGTSNKK+SLF MLKTTKT GG+RLL+ANLLQPLKDI+T
Sbjct: 176 MSIDSTSVQTLEIIDPLHTELWGTSNKKKSLFQMLKTTKTTGGSRLLKANLLQPLKDIQT 235
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLDCLDELMSNE+LFFGL+Q LRKFPKE+D+VLCHFCFKPKKVT KVL N +KSQ
Sbjct: 236 INARLDCLDELMSNEELFFGLTQGLRKFPKESDKVLCHFCFKPKKVTDKVLKPANGRKSQ 295
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LIS II+LKTALDA+P L+KVLK A+SFLL NIY++VCEN KYA++RKRIG+VIDEDV+
Sbjct: 296 MLISDIIVLKTALDAIPFLSKVLKGAKSFLLHNIYQTVCENPKYANMRKRIGDVIDEDVV 355
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
H+R PFVA TQQCFA+K GIDGLLD+ARRSFCDTSEA+HNLA KYR++ +PNLK+ +N
Sbjct: 356 HSRAPFVACTQQCFAVKAGIDGLLDVARRSFCDTSEAIHNLAKKYRDDYNMPNLKITYNI 415
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
RQGFY IP KDI +LP+ FIQVV+HG N+HCS+LELASLNVRNKS+A EC+ RTE+CL
Sbjct: 416 RQGFYFIIPQKDITDRLPNKFIQVVRHGKNLHCSSLELASLNVRNKSSAAECFSRTELCL 475
Query: 301 EALVDAI 307
E + I
Sbjct: 476 EGVYQCI 482
>gi|356551422|ref|XP_003544074.1| PREDICTED: mutS protein homolog 4-like [Glycine max]
Length = 471
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 200/246 (81%), Positives = 221/246 (89%), Gaps = 3/246 (1%)
Query: 171 IGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELK 230
IGEVIDEDVLHARVPFVA TQQCFA+K GIDGLLDI+RR+FC+TSEA++N+AN YRE+ K
Sbjct: 5 IGEVIDEDVLHARVPFVACTQQCFAVKAGIDGLLDISRRAFCETSEAINNIANNYREDFK 64
Query: 231 LPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
LPNLKL + NRQGF+ IP K+IQGKLPS FIQVVKHGNNI CS+LELASLN RNKSAA
Sbjct: 65 LPNLKLTYKNRQGFHFVIPQKNIQGKLPSKFIQVVKHGNNIRCSSLELASLNARNKSAAA 124
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
ECY RTE+CLEA ++ +VSVLTLLAEVLCLLDMIVNSFAH ISTKPVDRYTRP FTE
Sbjct: 125 ECYTRTEVCLEA---NVKNNVSVLTLLAEVLCLLDMIVNSFAHMISTKPVDRYTRPEFTE 181
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
NGPLAID GRHPILESIHNDF+ NNIF++EA+NM IV GPNMSGKSTYLQQVCLIVILAQ
Sbjct: 182 NGPLAIDFGRHPILESIHNDFVANNIFLTEASNMAIVMGPNMSGKSTYLQQVCLIVILAQ 241
Query: 411 IGCYVP 416
+GCYVP
Sbjct: 242 VGCYVP 247
>gi|384248074|gb|EIE21559.1| hypothetical protein COCSUDRAFT_17595 [Coccomyxa subellipsoidea
C-169]
Length = 741
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 232/572 (40%), Positives = 346/572 (60%), Gaps = 31/572 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIG-GTRLLRANLLQPLKDIE 59
M+ID +VR LE+I+P+ + G+ + SLF L TKT LL+ANLLQPL DI
Sbjct: 170 MHIDIATVRALELIKPMKAPTQGS--RGGSLFWWLNHTKTRSPNVMLLQANLLQPLTDIG 227
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
TI R + ++EL+ ++ L + L P D++ F P D ++
Sbjct: 228 TIQLRYNVVEELLGSDDLACSIGHCLASLPNNLDKLCSGLAFWPSAPGK-----DPVQRI 282
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+L+ S+ILL+ AL ALP LA L+ A+S LL + R+ + +A + + I +D DV
Sbjct: 283 ASLVQSVILLREALTALPSLADALEPAKSELLKAV-RANASHPVFAELLQVIDAALDSDV 341
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK---L 236
++ FV RTQQCFA+K G+D LD+AR SFC SE +H LA KYRE + +LK L
Sbjct: 342 SSSKAAFVNRTQQCFAVKSGVDSFLDLARTSFCRISEEIHELAAKYRETHGIVSLKAAQL 401
Query: 237 PFNNRQGFYLSIPHKDIQGK------LPSTFIQVVKHGNN---IHCSTLELASLNVRNKS 287
+ ++GFYL + K LP F+Q+ N I C+T EL +LN R K
Sbjct: 402 QYAAKRGFYLMAQRPGAKTKEGTVPPLPRKFVQLEGGTRNRVTIACTTAELNALNARLKD 461
Query: 288 AAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
A +C I T+ LE V + +S++ L + + LLDM+ SFA IS + Y RP
Sbjct: 462 ATNDCMIITQQILEGTVSTACQRLSMMHRLIDSVALLDMLA-SFALAIS-QSDGNYVRPQ 519
Query: 348 FTENGPLAIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406
TE+GP+AI GRHP++E + + ++ N+ +++E+++ ++TGPNM+GK+TYL+QV LI
Sbjct: 520 LTEHGPMAIVEGRHPLVEQLMDTEYQANDTYLAESSSFYVITGPNMAGKTTYLRQVALIT 579
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMT-------EMKETAFVMQNV 459
ILA +GC+VPA +++R VD + TR+GT D++E+NSS+FM+ ++ETA ++ +
Sbjct: 580 ILAHMGCHVPARLASLRPVDGLLTRIGTSDSIENNSSSFMSCWTVFSWWLQETAHIIGHA 639
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKIL 519
++RSL+++DELGRATS++DG AIAW+ EHL+ + A+T+FA+H L ELA +YP+ K
Sbjct: 640 TDRSLVLIDELGRATSTADGVAIAWAISEHLIGVGAFTLFATHFSPLGELAEMYPSCKQW 699
Query: 520 HFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLA 551
HF V RL + +L G V HYGLL+A
Sbjct: 700 HFGVDTGEQRLQYGHKLLPGQAAVLHYGLLMA 731
>gi|410898419|ref|XP_003962695.1| PREDICTED: mutS protein homolog 4-like [Takifugu rubripes]
Length = 807
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 239/636 (37%), Positives = 380/636 (59%), Gaps = 42/636 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKR----SLFHMLKTTKTIGGTRLLRANLLQPLKDI 58
ID+ S +LE++ +N+ R SL +L TKT GG R LR+N+L+PL D+
Sbjct: 185 IDSASASHLELV---------VNNRDRRSEHSLLGVLNHTKTAGGARRLRSNILEPLVDV 235
Query: 59 ETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
+TIN RLD + EL+ E+LFFGL + F +TD++L PK+ T ++
Sbjct: 236 DTINMRLDSIQELLQEEELFFGLKNVIGHF-LDTDQLLSVLVQIPKQETVQI-------- 286
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ I+ +I LK LD +P L VLK+ + LL Y + E+ ++ I ++I VI++D
Sbjct: 287 AEAKITHVIQLKHTLDLVPQLKMVLKNCNTALL-KAYCTSLEDSRFDVILEQIKTVINDD 345
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+ + RTQ+C+A++ I+ LDI+RR++ + + + L ++ E P ++ F
Sbjct: 346 TTYLKGSLHMRTQKCYAVRPNINEFLDISRRAYTEIVDDIAGLVSQLGENYGFP-MRTSF 404
Query: 239 NNRQGFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +GF++ + + + +GKLPS FI++ KH NN +T +L +N R A E +
Sbjct: 405 STARGFFIQMRLEGVVLPEGKLPSEFIKITKHKNNYSFTTADLMKMNDRCDEALREIFHM 464
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ + + L+ I E + L L++ + +LDM+V S A+ + + Y RP FT+ LA
Sbjct: 465 SYVVIRQLLSTIHEHIHCLYKLSDAVSMLDMLV-SLANACT---LSDYVRPDFTDT--LA 518
Query: 356 IDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHPILE + + NN +ISE N VI+TGPNMSGKSTYL+QV L I+AQIG Y
Sbjct: 519 IKQGRHPILERMAGQLPVSNNTYISEGCNFVIITGPNMSGKSTYLKQVALCQIMAQIGSY 578
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA +++ RV D+IFTR+G D+ E++SSTFM EMKE ++++ N+S+RSLI++DELGR T
Sbjct: 579 VPATYASFRVADQIFTRIGVDDDFETSSSTFMLEMKEISYIIHNISDRSLIIIDELGRGT 638
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV------IRNN 528
S+ +G + S CE LLSLKA+T+FA+H L +L T+YPNV+ H V +
Sbjct: 639 SAEEGIGLCHSVCEFLLSLKAFTLFATHFLELCQLETLYPNVENQHMGVQHTRSSDSGTD 698
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
+ + + L+ G HYGL AE+ LPS +I+ A+++ S+++++ + R + +Q
Sbjct: 699 SVVYTYLLQRGCSEDRHYGLRAAEMTSLPSDLIKEAKTVVSKVSQQLLSRHHCDPETLQQ 758
Query: 589 IQMLYHAAQRLI-CLKYSNQDEESIRHALQNLKESF 623
+ +YH A RL+ + S D +S+R L+ LK+ +
Sbjct: 759 -RAVYHLATRLLQAARNSRLDPDSLRMYLKGLKKQY 793
>gi|326925565|ref|XP_003208983.1| PREDICTED: mutS protein homolog 4-like [Meleagris gallopavo]
Length = 928
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 233/633 (36%), Positives = 383/633 (60%), Gaps = 36/633 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ + G +LF +L TKT GG+R LR+N+L+PL D ETI
Sbjct: 306 IDSSSAQNLELVTNNRDSRNG-----HTLFGVLNYTKTPGGSRRLRSNILEPLVDAETIK 360
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
TRLDC+ E + +E+LFFGL + KF +T+++L PK+ D K +++
Sbjct: 361 TRLDCVQEFLQDEELFFGLQAVISKF-LDTEQLLSVLVQIPKQ--------DTVKTAESK 411
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I++II LK L+ + L L+ + LL Y S E+ ++ I ++I VI++D +A
Sbjct: 412 ITNIIYLKHTLELVEPLKAALRSCNTSLL-KAYYSALEDRRFGIILEKITTVINDDTRYA 470
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A+K I+ LDIARR++ + + + + + E+ LP LK F++ +
Sbjct: 471 KGCLSMRTQKCYAVKPNINEFLDIARRTYTEIVDDIAGMITQLAEKYSLP-LKTSFSSVR 529
Query: 243 GFYLSIPHKDIQ----GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
GF++ + + D G+LPS F +V K N ++ +L +N R + + E Y T +
Sbjct: 530 GFFIQL-NADCSTLPNGQLPSEFTKVTKTRNIYSFTSADLIKMNERCQESLREIYHMTYL 588
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L++ I E + L L++++ +LDM++ SFAH + + Y RP FT+ LAI
Sbjct: 589 IVCKLLNEIYEHIHCLYKLSDIVSMLDMLL-SFAHACT---ISDYVRPEFTDT--LAIKQ 642
Query: 359 GRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
G HPILE I + + NN +++E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 643 GWHPILEKIAMEKPVSNNAYLTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPA 702
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + R+ ++IFTR+G D++E+N+STFM EMKE +++QN +++SLI++DELGR TS+
Sbjct: 703 EYCSFRIAEQIFTRIGMDDDIETNASTFMKEMKEITYIIQNANDKSLIIIDELGRGTSAE 762
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV------VIRNNRLD 531
+G I ++ CE+LL+LKA+T+FA+H L + +YPNV+ HF V + ++
Sbjct: 763 EGIGICYAACEYLLNLKAFTLFATHFLELCHMDALYPNVENYHFEVQHVRSSAGKKEKIT 822
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQM 591
+ + L G +YGL AEV+ LP ++I A++IT+ + ++ + R + K +
Sbjct: 823 YTYTLSKGYTEEKNYGLKAAEVSSLPPSIILDAKAITTHVAEQILHRQKTTPEMMKH-RA 881
Query: 592 LYHAAQRLI-CLKYSNQDEESIRHALQNLKESF 623
+YH A RL+ + S D +S++ L+ LK+ +
Sbjct: 882 VYHLAMRLVQAARNSRLDSDSLQVYLKGLKKKY 914
>gi|440907914|gb|ELR57998.1| MutS protein-like protein 4 [Bos grunniens mutus]
Length = 938
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 234/632 (37%), Positives = 390/632 (61%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ S +LF +L TKT GG+R LR+N+L+PL D+ETIN
Sbjct: 314 IDSSSAQNLELLINNQD-----SRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDVETIN 368
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ T V +++
Sbjct: 369 MRLDCVQELLQDEELFFGLQSVIARF-LDTEQLLSVLVQIPKQDTVNV--------AESK 419
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E++++ I +I VI++D +
Sbjct: 420 ITNLIYLKHTLELVDPLKITLKNCNTPLLRAYYGSL-EDKRFGIILDKIKTVINDDARYM 478
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + + E+ LP L+ F++ +
Sbjct: 479 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMITQLAEKYSLP-LRTSFSSAR 537
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 538 GFFIQMTTDCTVLPNDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 597
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 598 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 651
Query: 360 RHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + NN +I+E +N I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 652 WHPILERISVEKPVANNTYITEGSNFFIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 711
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 712 YSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEVAYILHNANDKSLILIDELGRGTNTEE 771
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CEHLLSLKA+T+FA+H L ++ +YPNV+ +HF V ++N + +
Sbjct: 772 GIGICYAVCEHLLSLKAFTLFATHFLELCQIDVLYPNVENMHFEVQHVKNTSRNKEAILY 831
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++ + +
Sbjct: 832 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKDITTQIT-RQILQNQRSAPEMERQRAV 890
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 891 YHLATRLVQTARNSQLDPDSLRTYLSNLKKKY 922
>gi|329664632|ref|NP_001193184.1| mutS protein homolog 4 [Bos taurus]
gi|296489243|tpg|DAA31356.1| TPA: MutS homolog 4-like [Bos taurus]
Length = 934
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 234/632 (37%), Positives = 390/632 (61%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ S +LF +L TKT GG+R LR+N+L+PL D+ETIN
Sbjct: 310 IDSSSAQNLELLINNQD-----SRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDVETIN 364
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ T V +++
Sbjct: 365 MRLDCVQELLQDEELFFGLQSVIARF-LDTEQLLSVLVQIPKQDTVNV--------AESK 415
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E++++ I +I VI++D +
Sbjct: 416 ITNLICLKHTLELVDPLKITLKNCNTPLLRAYYGSL-EDKRFGIILDKIKTVINDDARYM 474
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + + E+ LP L+ F++ +
Sbjct: 475 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMITQLAEKYSLP-LRTSFSSAR 533
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 534 GFFIQMTTDCTVLPNDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 593
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 594 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 647
Query: 360 RHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + NN +I+E +N I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 648 WHPILERISVEKPVANNTYITEGSNFFIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 707
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 708 YSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEVAYILHNANDKSLILIDELGRGTNTEE 767
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CEHLLSLKA+T+FA+H L ++ +YPNV+ +HF V ++N + +
Sbjct: 768 GIGICYAVCEHLLSLKAFTLFATHFLELCQIDVLYPNVENMHFEVQHVKNTSRNKEAILY 827
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++ + +
Sbjct: 828 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKDITTQIT-RQILQNQRSAPEMERQRAV 886
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 887 YHLATRLVQTARNSQLDPDSLRTYLSNLKKKY 918
>gi|426215760|ref|XP_004002137.1| PREDICTED: LOW QUALITY PROTEIN: mutS protein homolog 4 [Ovis aries]
Length = 928
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 236/632 (37%), Positives = 391/632 (61%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ S +LF +L TKT GG+R LR+N+L+PL D+ETI+
Sbjct: 308 IDSSSAQNLELLINNQD-----SRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDVETIS 362
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 363 MRLDCVQELLQDEELFFGLQSVIARF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 413
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E++++ I +I VI++D +
Sbjct: 414 ITNLIYLKHTLELVDPLKITLKNCNTPLLRAYYGSL-EDKRFGIILDKIKTVINDDARYM 472
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + + E+ LP L+ F++ +
Sbjct: 473 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMITQLAEKYSLP-LRTSFSSAR 531
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 532 GFFIQMTTDCTVLPNDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 591
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 592 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 645
Query: 360 RHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + NN +I+E +N I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 646 WHPILERISVEKPVANNTYITEGSNFFIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 705
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 706 YSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 765
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CEHLLSLKA+T+FA+H L ++ +YPNV+ +HF V ++N + +
Sbjct: 766 GIGICYAVCEHLLSLKAFTLFATHFLELCQIDGLYPNVENMHFEVQHVKNTSRNKEAILY 825
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT+RIT +++ + + + + ++ + +
Sbjct: 826 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKDITTRIT-RQILQNQRSTPEMERQRAV 884
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 885 YHLATRLVQTARNSQLDPDSLRTYLSNLKKKY 916
>gi|363736703|ref|XP_422549.3| PREDICTED: mutS protein homolog 4 [Gallus gallus]
Length = 883
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 235/630 (37%), Positives = 385/630 (61%), Gaps = 35/630 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ + G +LF +L T+T GG+R LR+N+L+PL D ETI
Sbjct: 253 IDSSSAQNLELVTNNRDSRNG-----HTLFGVLNYTRTPGGSRRLRSNILEPLVDAETIK 307
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
TRLDC+ E + +E+LFFGL + KF +T+++L PK+ D K +++
Sbjct: 308 TRLDCVQEFLQDEELFFGLQAVISKF-LDTEQLLSILVQIPKQ--------DTVKTAESK 358
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
IS+II LK L+ + L L+ + LL Y ++ E+ ++ I ++I VI++D +A
Sbjct: 359 ISNIIYLKHTLELVEPLKAALRRCNTSLLRAYYNAL-EDRRFGIILEKITAVINDDTRYA 417
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A+K I+ LDIARR++ + + + + + E+ LP LK F++ +
Sbjct: 418 KGCLSMRTQKCYAVKPNINEFLDIARRTYTEIVDDIAGMITQLAEKYNLP-LKTSFSSVR 476
Query: 243 GFYLSIPHKDIQ----GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
GF++ + + D GKLPS F +V K N ++ +L +N R + + E Y T +
Sbjct: 477 GFFIQM-NADCSALPNGKLPSEFTKVTKTRNTYSFTSADLIKMNERCQESLREIYHMTYL 535
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L++ I E + L L++++ +LDM++ SFAH + + Y RP FT+ LAI
Sbjct: 536 IVCKLLNEIYEHIHCLYKLSDIVSMLDMLL-SFAHACT---ISDYVRPEFTDT--LAIKQ 589
Query: 359 GRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
G HPILE I + + NN +++E +N +I+TGPNMSGKSTY++Q+ L I+AQIG YVPA
Sbjct: 590 GWHPILEKIAMEKPVSNNAYLTEGSNFLIITGPNMSGKSTYIKQIALCQIMAQIGSYVPA 649
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + R+ ++IFTR+G D++E+N+STFM EMKE +++QN +++SLI++DELGR TS+
Sbjct: 650 EYCSFRIAEQIFTRIGMDDDIETNASTFMKEMKEITYIIQNANDKSLIIIDELGRGTSAE 709
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNN----RLDF 532
+G I ++ CE+LL+LKA+T+FA+H L + +YPNV+ HF V +R++ ++ +
Sbjct: 710 EGIGICYAACEYLLNLKAFTLFATHFLELCHMDALYPNVENYHFEVQHVRSSAGKEKITY 769
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
+ L G +YGL AEV+ LP ++I A++IT+ I K+ + R K + +
Sbjct: 770 TYTLSKGYTEEKNYGLKAAEVSSLPPSIILDAKAITNHIAKQILHRQRTTPEMMKH-RAV 828
Query: 593 YHAAQRLI-CLKYSNQDEESIRHALQNLKE 621
YH A RL+ + S D +S++ L+ LK+
Sbjct: 829 YHLAMRLVQTARNSRLDSDSLQIYLKGLKK 858
>gi|397521055|ref|XP_003830619.1| PREDICTED: mutS protein homolog 4 [Pan paniscus]
Length = 936
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 237/632 (37%), Positives = 393/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 312 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 366
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 367 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 417
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 418 ITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 476
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 477 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP-LRTSFSSAR 535
Query: 243 GFYLSIPHKDIQ---GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + I +LPS FI+V K N+ ++ +L +N R + + E Y T +
Sbjct: 536 GFFIQMTTDCIALPTDQLPSEFIKVSKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 595
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 596 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 649
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + I NN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 650 WHPILEKISAEKPIANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 709
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 710 YSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 769
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N + +
Sbjct: 770 GIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILY 829
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++ + +
Sbjct: 830 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPEMERQRAV 888
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 889 YHLATRLVQTARNSQLDPDSLRIYLSNLKKKY 920
>gi|119626798|gb|EAX06393.1| mutS homolog 4 (E. coli), isoform CRA_b [Homo sapiens]
Length = 937
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 235/632 (37%), Positives = 397/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 313 IDSSSAQNLELL--INNQDY---RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 367
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 368 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 418
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 419 ITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 477
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 478 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP-LRTSFSSAR 536
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + I +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 537 GFFIQMTTDCIALPSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 596
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 597 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 650
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + I NN +++E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 651 WHPILEKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 710
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 711 YSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 770
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N + +
Sbjct: 771 GIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILY 830
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++ + +
Sbjct: 831 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPEMERQRAV 889
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 890 YHLATRLVQTARNSQLDPDSLRIYLSNLKKKY 921
>gi|36949366|ref|NP_002431.2| mutS protein homolog 4 [Homo sapiens]
gi|30316344|sp|O15457.2|MSH4_HUMAN RecName: Full=MutS protein homolog 4; Short=hMSH4
gi|4336728|gb|AAD17920.1| meiosis-specific MutS homolog [Homo sapiens]
gi|30016939|gb|AAP03427.1| mutS homolog 4 (E. coli) [Homo sapiens]
gi|119626797|gb|EAX06392.1| mutS homolog 4 (E. coli), isoform CRA_a [Homo sapiens]
Length = 936
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 235/632 (37%), Positives = 397/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 312 IDSSSAQNLELL--INNQDY---RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 366
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 367 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 417
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 418 ITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 476
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 477 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP-LRTSFSSAR 535
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + I +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 536 GFFIQMTTDCIALPSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 595
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 596 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 649
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + I NN +++E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 650 WHPILEKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 709
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 710 YSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 769
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N + +
Sbjct: 770 GIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILY 829
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++ + +
Sbjct: 830 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPEMERQRAV 888
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 889 YHLATRLVQTARNSQLDPDSLRIYLSNLKKKY 920
>gi|403257729|ref|XP_003921449.1| PREDICTED: mutS protein homolog 4 [Saimiri boliviensis boliviensis]
Length = 935
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 236/632 (37%), Positives = 393/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 311 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 365
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC++EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 366 MRLDCVEELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 416
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 417 ITNLIYLKHTLELVDPLKIAMKNCNAPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 475
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 476 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP-LRTSFSSAR 534
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + I +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 535 GFFIQMTTDCIALPSDQLPSEFIKISKAKNSYSFTSADLIKMNERCQESLREIYHMTYMI 594
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 595 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 648
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + + NN +I+E +N I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 649 WHPILEKITAEKPVANNTYITEGSNFFIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 708
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 709 YSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 768
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRNNR-LDF 532
G I ++ CE+LLSLKA+T+FA+H L + T+YPNV+ +HF V RN + +
Sbjct: 769 GIGICYAVCEYLLSLKAFTLFATHFLELCYIDTLYPNVENMHFEVQHVQNTSRNKEAILY 828
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++ + +
Sbjct: 829 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPEMERQRAV 887
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q + +S+R L NLK+ +
Sbjct: 888 YHLATRLVQTARNSQLNPDSLRTYLSNLKKKY 919
>gi|338725512|ref|XP_001918308.2| PREDICTED: mutS protein homolog 4 [Equus caballus]
Length = 933
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 235/632 (37%), Positives = 389/632 (61%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 309 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 363
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ T V +++
Sbjct: 364 MRLDCVQELLHDEELFFGLQSVISRF-LDTEQLLSVLIQIPKQDTVNV--------AESK 414
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 415 ITNLIYLKHTLELVDPLKIALKNCDTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 473
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 474 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLAEKYSLP-LRTSFSSAR 532
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 533 GFFIQMTTDCTALPDDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 592
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 593 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 646
Query: 360 RHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + NN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 647 WHPILEKISVEKPVANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 706
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 707 YSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 766
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CEHLLSLKA+T+FA+H L + +YPNV+ +HF V ++N + +
Sbjct: 767 GIGICYAVCEHLLSLKAFTLFATHFLELCHIDVLYPNVENMHFEVQHVKNTSRNKEAILY 826
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT++ ++ + +Q + +
Sbjct: 827 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQITRQILQNQKSTPEMERQ-RAV 885
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 886 YHLATRLVQTARNSQLDADSLRTYLSNLKKKY 917
>gi|114557223|ref|XP_524742.2| PREDICTED: mutS protein homolog 4 [Pan troglodytes]
Length = 936
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 236/632 (37%), Positives = 393/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 312 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 366
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 367 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 417
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 418 ITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 476
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 477 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP-LRTSFSSAR 535
Query: 243 GFYLSIPHKDIQ---GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + I +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 536 GFFIQMTTDCIALPTDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 595
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 596 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 649
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + I NN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 650 WHPILEKISAEKPIANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 709
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 710 YSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 769
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N + +
Sbjct: 770 GIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILY 829
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++ + +
Sbjct: 830 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPEMERQRAV 888
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 889 YHLATRLVQTARNSQLDPDSLRIYLSNLKKKY 920
>gi|224058563|ref|XP_002187749.1| PREDICTED: mutS protein homolog 4, partial [Taeniopygia guttata]
Length = 847
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 237/636 (37%), Positives = 385/636 (60%), Gaps = 42/636 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ + G +L +L TKT GG+R LRAN+L+PL D ETIN
Sbjct: 225 IDSSSAQNLELVINNRDSRNG-----HTLLGVLNYTKTPGGSRRLRANILEPLVDAETIN 279
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
TRLD + EL+ +E+LFFGL + KF +T+++L PK+ D K +++
Sbjct: 280 TRLDSVQELLQDEELFFGLQAVISKFL-DTEQLLSVLVQIPKQ--------DTVKTAESK 330
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L L+ + LL Y S+ E+ ++ I ++I VI++D +
Sbjct: 331 ITNLIYLKHTLELVEPLKAALRSCNTQLLKAYYNSL-EDTRFGIILEKITSVINDDTRYT 389
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A+K I+ LDIARR++ + + + + + E+ LP +K F++ +
Sbjct: 390 KGCLSMRTQKCYAVKPNINEFLDIARRTYTEIVDDIAGMITQLAEKYSLP-MKTGFSSAR 448
Query: 243 GFYL-------SIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
GF++ ++P+ G+LPS F ++ K N ++ +L +N R + + E Y
Sbjct: 449 GFFIQMNADCSTLPN----GQLPSEFTKITKMKNTYSFTSADLIKMNERCQESLREIYHM 504
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
T + + L++ I E + L L++++ +LDM++ SFAH + + Y RP FT+ LA
Sbjct: 505 TYLIVCKLLNEIYEHIHCLYKLSDIVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LA 558
Query: 356 IDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I G HPILE I + + NN +++E N VI+TGPNMSGKSTYL+Q+ L I+AQIG Y
Sbjct: 559 IKQGWHPILEKIAMEKPVSNNTYLTEGNNFVIITGPNMSGKSTYLKQIALCQIMAQIGSY 618
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + R+ ++IFTR+G D++E+N+STFM EMKE +++QN +++SLI++DELGR T
Sbjct: 619 VPAEYCSFRIAEQIFTRIGMDDDIETNASTFMKEMKEITYIIQNANDKSLIIIDELGRGT 678
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNN----- 528
S+ +G I ++ CE+LL+LKA+T+FA+H L + +YPNV+ HF V +R++
Sbjct: 679 SAEEGIGICYAACEYLLNLKAFTLFATHFLELCHIDALYPNVENYHFQVQHVRSSAGNKE 738
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
++ + + L G +YGL AEV+ LPS++I A+ ITS I K+ + R + KQ
Sbjct: 739 KIAYTYTLSKGYTEEKNYGLKAAEVSSLPSSIILDAKEITSHIAKQILHRQKSTPEMMKQ 798
Query: 589 IQMLYHAAQRLI-CLKYSNQDEESIRHALQNLKESF 623
+ Y A RL+ + S D +S+R L+ LK+ +
Sbjct: 799 -RATYQLAMRLVQTARNSRLDPDSLRVYLKALKKKY 833
>gi|60654407|gb|AAX29894.1| mutS-like 4 [synthetic construct]
Length = 937
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 234/632 (37%), Positives = 397/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +LF +L TKT GG+R LR+N+L+PL DIET+N
Sbjct: 312 IDSSSAQNLELL--INNQDY---RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETVN 366
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 367 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 417
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 418 ITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 476
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 477 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP-LRTSFSSAR 535
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + I +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 536 GFFIQMTTDCIALPSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 595
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 596 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 649
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + I NN +++E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 650 WHPILEKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 709
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 710 YSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 769
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N + +
Sbjct: 770 GIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILY 829
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++ + +
Sbjct: 830 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPEMERQRAV 888
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 889 YHLATRLVQTARNSQLDPDSLRIYLSNLKKKY 920
>gi|21542526|gb|AAH33030.1| MutS homolog 4 (E. coli) [Homo sapiens]
gi|123980712|gb|ABM82185.1| mutS homolog 4 (E. coli) [synthetic construct]
gi|123995539|gb|ABM85371.1| mutS homolog 4 (E. coli) [synthetic construct]
gi|261860200|dbj|BAI46622.1| mutS homolog 4 [synthetic construct]
Length = 936
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 234/632 (37%), Positives = 397/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +LF +L TKT GG+R LR+N+L+PL DIET+N
Sbjct: 312 IDSSSAQNLELL--INNQDY---RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETVN 366
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 367 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 417
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 418 ITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 476
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 477 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP-LRTSFSSAR 535
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + I +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 536 GFFIQMTTDCIALPSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 595
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 596 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 649
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + I NN +++E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 650 WHPILEKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 709
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 710 YSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 769
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N + +
Sbjct: 770 GIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILY 829
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++ + +
Sbjct: 830 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPEMERQRAV 888
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 889 YHLATRLVQTARNSQLDPDSLRIYLSNLKKKY 920
>gi|390337892|ref|XP_780878.3| PREDICTED: mutS protein homolog 4 [Strongylocentrotus purpuratus]
Length = 911
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 235/637 (36%), Positives = 378/637 (59%), Gaps = 43/637 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA + RNLE+++ +LF +L TKT+GG RL+R+N+LQP D ETI
Sbjct: 293 IDAVTARNLELVQNRKDP-----KSDHTLFGVLNYTKTMGGARLMRSNILQPPFDEETIK 347
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL NE+LF+ L L +F + D +L PK+ ++ K S+
Sbjct: 348 LRLDVVAELTENEELFYNLQSVLSRF-LDVDHLLSLCVQIPKE--------ESVKSSEQK 398
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L L+ AQS L Y ++ ++ I ++I VI+++ +
Sbjct: 399 ITNVIHLKHTLELVEPLHVALQSAQS-KLPQAYHKTLQDTRFQQILEKIATVINDETRYQ 457
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+CFA+K I+GLLD+ARR++ + + + + + +E L L+ ++ +
Sbjct: 458 KGTLNMRTQKCFAVKPEINGLLDVARRTYTELVDDISEMIKQLSDEHGL-MLRTSYSTAR 516
Query: 243 GFYL--------SIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
GF++ SIP + LP FI+VVK N + +T +L +N R + + E Y+
Sbjct: 517 GFFIQLYCKGKYSIPVES----LPPVFIKVVKAKNTLSFTTTDLIKMNDRVRESLNEIYL 572
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
T + + L++ IRE V L LAE + ++DM+V SFAH + + Y RP FT+ L
Sbjct: 573 MTNVVVSQLLNDIREHVGCLYKLAECVSVIDMLV-SFAHACT---LSDYVRPDFTDT--L 626
Query: 355 AIDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
AI RHPIL+ I D +PNNI+ SE N +I+TGPNMSGKSTYL+Q+ L+ I+AQIGC
Sbjct: 627 AIKQARHPILDKISFDPPVPNNIYASEEGNFLIITGPNMSGKSTYLKQIALLQIMAQIGC 686
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA +++ R+ D++F+R+G D++E+N+S+F EM+E +++QN + SL+++DELGR
Sbjct: 687 FVPAEYASFRICDQVFSRIGCDDDIETNASSFTLEMREINYIVQNCTHESLVIIDELGRG 746
Query: 474 TSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR------N 527
TSS +G I + CE+LLSLKA+T FA+H L+ L +YPNV+ HF V +
Sbjct: 747 TSSDEGVGICHAICEYLLSLKAFTFFATHFMELTNLDALYPNVENYHFQVEQSLAEGEDS 806
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
NRL + L G +YG+ LAE++ LP +++ A++++ ++ + + E + + +
Sbjct: 807 NRLSYTHILSRGRTTEQYYGIKLAEISALPPSIVREAKALSQKLAHQRKAQKE-SVKKDQ 865
Query: 588 QIQMLYHAAQRLI-CLKYSNQDEESIRHALQNLKESF 623
+++ L+ A RLI + S D+ +R L+ LKES+
Sbjct: 866 KMRPLFRLANRLIQAARSSKLDQAGLREYLKVLKESY 902
>gi|334321468|ref|XP_001368667.2| PREDICTED: mutS protein homolog 4 [Monodelphis domestica]
Length = 894
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 233/634 (36%), Positives = 389/634 (61%), Gaps = 36/634 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S ++LE++ + +LF +L TKT GG+R LR+NLL+PL D+ TIN
Sbjct: 267 IDSSSAQSLELLVNAQDC-----RSQHTLFGVLNHTKTPGGSRRLRSNLLEPLTDVGTIN 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC++EL+ +E+LFFGL + +F +T+++L PK+ D K S++
Sbjct: 322 MRLDCVEELLRDEELFFGLQSVISRF-LDTEQLLSALVQIPKQ--------DTVKASESK 372
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +L+ ++ L YR + ++ +I +RIG VI++D +
Sbjct: 373 ITNLIYLKHTLELVEPLKALLEKCRTPLF-KAYRDSLGDSRFGTILERIGTVINDDARYL 431
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
R RTQ+C+A+K I+ LDIARR++ + + + + + E+ LP LK F++ +
Sbjct: 432 RGCLNMRTQKCYAVKSNINEFLDIARRTYTEIVDDIAGMIAQLAEKYSLP-LKTSFSSAR 490
Query: 243 GFYLSIPHKDI----QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
GF++ + + D + LPS FI++ K + ++ +L +N R + + E Y T +
Sbjct: 491 GFFIQM-NTDCSLLPRAPLPSEFIKITKTKSTYSFTSADLIKMNERCQESLREIYHMTYM 549
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L+ + E + L L++V+ ++DM++ +FAH + + Y RP FT+ LA+
Sbjct: 550 VVCQLLSEVYEHIHCLYKLSDVVSMVDMLL-AFAHACT---LSDYVRPEFTDT--LAVKQ 603
Query: 359 GRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
G HPILE I + + N+ +I+E +N V+VTGPNMSGKSTYL+Q+ L I+AQIG +VPA
Sbjct: 604 GWHPILEKISAERPVANDTYIAEGSNFVLVTGPNMSGKSTYLKQIALCQIMAQIGSFVPA 663
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+S+ R+ ++IFTR+ T D++ESN+STFM EMKE A+++ N ++RSLI++DELGR TS+
Sbjct: 664 QYSSFRITEQIFTRISTDDDMESNASTFMKEMKEIAYILHNANDRSLILIDELGRGTSTE 723
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV--VIRNNR----LD 531
+G I ++ CE+LL LKA+T+FA+H L +L +PNV+ LHF V R+ R +
Sbjct: 724 EGIGICFAVCEYLLGLKAFTLFATHFLELCQLDVFFPNVENLHFEVEHASRSPRGREAIT 783
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN-CLQYKQIQ 590
+ ++L G +YG+ AE + LP ++I A++I +++T++ ++R N + + +
Sbjct: 784 YTYRLAKGHTEEKNYGIQAAEASSLPQSIISEAKAIRAQVTRQMLERQNQNSSPETTRRR 843
Query: 591 MLYHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
+Y A RL+ ++Q D ES+R L+ LK SF
Sbjct: 844 AVYRLATRLLQTARNSQLDAESLRLYLKGLKISF 877
>gi|348586754|ref|XP_003479133.1| PREDICTED: mutS protein homolog 4-like [Cavia porcellus]
Length = 937
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 235/632 (37%), Positives = 391/632 (61%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID+ S +NLE++ S +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 313 IDSASAQNLELLINNQD-----SRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 367
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 368 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 418
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E+ ++ I ++I VI++D +
Sbjct: 419 ITNLIYLKHTLELVTPLKIALKNCTTPLLRAYYGSL-EDTRFEIILEKIKTVINDDARYM 477
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 478 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLAEKYNLP-LRTSFSSAR 536
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 537 GFFIQMTTDYTVLPNDQLPSEFIKISKVKNSYSFTSTDLIKMNERCQESLREIYHMTYMV 596
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 597 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 650
Query: 360 RHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + NN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 651 WHPILEKISVEKPVANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 710
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 711 YSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 770
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LL+LKA+T+FA+H L + +YPNV+ +HF V ++N + +
Sbjct: 771 GIGICYAVCEYLLNLKAFTLFATHFLELCHIDALYPNVENMHFEVEHVKNTSRNKEAILY 830
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ I+++IT ++ + + + + ++ +++
Sbjct: 831 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVVDAKEISTQIT-GQILQNQRSTPEMERQRVV 889
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RLI ++Q D +S+R L NLK+ +
Sbjct: 890 YHLATRLIQTARNSQLDPDSLRMYLSNLKKKY 921
>gi|332222219|ref|XP_003260264.1| PREDICTED: mutS protein homolog 4 [Nomascus leucogenys]
Length = 940
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 235/632 (37%), Positives = 391/632 (61%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 316 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 370
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 371 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 421
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 422 ITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 480
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 481 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP-LRTSFSSAR 539
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + I +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 540 GFFIQMTTDCIALPSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 599
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 600 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 653
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + I NN +++E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 654 WHPILEKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 713
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 714 YSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 773
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N + +
Sbjct: 774 GIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILY 833
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT++ ++ + +Q + +
Sbjct: 834 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQITRQILQNQRSSPEMERQ-RAV 892
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
Y+ A RL+ ++Q D +S+R L NLK+ +
Sbjct: 893 YYLATRLVQTARNSQLDPDSLRIYLSNLKKKY 924
>gi|2463653|gb|AAB72039.1| MSH4 [Homo sapiens]
Length = 936
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 233/632 (36%), Positives = 396/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 312 IDSSSAQNLELL--INNQDY---RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 366
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L P++ D NA +S+
Sbjct: 367 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPEQ------DTVNAAESK-- 417
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 418 ITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 476
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ ++ +
Sbjct: 477 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP-LRTSLSSVR 535
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + I +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 536 GFFIQMTTDCIALPSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 595
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 596 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 649
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + I NN +++E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 650 WHPILEKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 709
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 710 YSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 769
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N + +
Sbjct: 770 GIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILY 829
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++ + +
Sbjct: 830 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPEMERQRAV 888
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 889 YHLATRLVQTARNSQLDPDSLRIYLSNLKKKY 920
>gi|395822085|ref|XP_003784354.1| PREDICTED: mutS protein homolog 4 [Otolemur garnettii]
Length = 850
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 237/632 (37%), Positives = 386/632 (61%), Gaps = 33/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 225 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGSRRLRSNILEPLIDIETIN 279
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 280 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 330
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E+ ++ I ++I VI++D +
Sbjct: 331 ITNLIYLKHTLELVDPLKITLKNCNTPLLRAYYGSL-EDNRFEIILEKIKTVINDDARYM 389
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 390 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYNLP-LRTSFSSAR 448
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 449 GFFIQMTTDCTALPSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 508
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ + E V L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 509 VCRLLSEVYEHVHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 562
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + + NN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 563 WHPILEKIAMEKPVANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 622
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ R+ +IFTR+ D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ D
Sbjct: 623 YASFRIAKQIFTRISNDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTED 682
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LLSLKA+T+FA+H L +L +Y NV+ +HF V ++N + +
Sbjct: 683 GIGICYAVCEYLLSLKAFTLFATHFLELCQLDVLYLNVENMHFEVQHVKNTSRNKEAILY 742
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AE + LPS++I AR IT++IT K ++ + + + +
Sbjct: 743 TYKLSKGLTEEKNYGLKAAEASSLPSSIILDAREITTQITGKILQTQRSTPPEMEGQRAV 802
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 803 YHLATRLVQTARNSQLDPDSLRTYLINLKKKY 834
>gi|109008508|ref|XP_001101368.1| PREDICTED: mutS protein homolog 4 [Macaca mulatta]
Length = 936
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 235/636 (36%), Positives = 394/636 (61%), Gaps = 42/636 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG+R LR+N+L+PL D+ETIN
Sbjct: 312 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGSRRLRSNILEPLIDVETIN 366
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 367 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 417
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 418 ITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 476
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 477 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP-LRTSFSSAR 535
Query: 243 GFY-------LSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
GF+ L++P+ +LPS FI++ K N+ ++ +L +N R + + E Y
Sbjct: 536 GFFIQMTTDCLALPND----QLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHM 591
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
T + + L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LA
Sbjct: 592 TYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LA 645
Query: 356 IDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I G HPILE I + I NN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG Y
Sbjct: 646 IKQGWHPILEKISAEKPIANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSY 705
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA +S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T
Sbjct: 706 VPAEYSSFRIAKQIFTRLSTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGT 765
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-- 531
++ +G I ++ CE+LLSLKA+T+FA+H L + +Y NV+ +HF V ++N +
Sbjct: 766 NTEEGIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYLNVENMHFEVQHVKNTSRNKE 825
Query: 532 ---FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
+ ++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++
Sbjct: 826 AILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPEMER 884
Query: 589 IQMLYHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
+ +YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 885 QRAVYHLATRLVQTARNSQLDPDSLRIYLSNLKKKY 920
>gi|344278992|ref|XP_003411275.1| PREDICTED: mutS protein homolog 4 [Loxodonta africana]
Length = 934
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 235/632 (37%), Positives = 385/632 (60%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG R LR+N+L+PL DIETIN
Sbjct: 310 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGGRRLRSNILEPLVDIETIN 364
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 365 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 415
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ L L LK+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 416 ITNLIYLKHTLELLDPLKIALKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 474
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + + E+ LP L+ F++ +
Sbjct: 475 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMITQLAEKYSLP-LRTSFSSAR 533
Query: 243 GFYLSIPHKDIQ---GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 534 GFFIQMSTDCTNLPNDRLPSEFIKISKMKNSYSFTSADLIKMNERCQESLREIYHMTYMV 593
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 594 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 647
Query: 360 RHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + NN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 648 WHPILEKITVEKPVANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 707
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 708 YSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 767
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N + +
Sbjct: 768 GIGICYAVCEYLLSLKAFTLFATHFLELCHIDVLYPNVENMHFEVQHVKNPSRNKEAILY 827
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AE + LP +++ A+ IT++IT++ ++ + +Q + +
Sbjct: 828 TYKLSKGHTEEKNYGLKAAEASSLPPSIVLDAKEITTQITRQILQNQKSTPEMERQ-RAV 886
Query: 593 YHAAQRLI-CLKYSNQDEESIRHALQNLKESF 623
YH A RL+ + S D + +R L NLK+ +
Sbjct: 887 YHLATRLVQTARNSRLDPDGLRIYLCNLKKKY 918
>gi|355745381|gb|EHH50006.1| hypothetical protein EGM_00763 [Macaca fascicularis]
Length = 940
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 234/636 (36%), Positives = 393/636 (61%), Gaps = 42/636 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG+R LR+N+L+PL D+ETIN
Sbjct: 316 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGSRRLRSNILEPLIDVETIN 370
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 371 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 421
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 422 ITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 480
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 481 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP-LRTSFSSAR 539
Query: 243 GFY-------LSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
GF+ L++P+ +LPS FI++ K N+ ++ +L +N R + + E Y
Sbjct: 540 GFFIQMTTDCLALPND----QLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHM 595
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
T + + L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LA
Sbjct: 596 TYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LA 649
Query: 356 IDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I G HPILE I + I NN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG Y
Sbjct: 650 IKQGWHPILEKISAEKPIANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSY 709
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA +S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T
Sbjct: 710 VPAEYSSFRIAKQIFTRLSTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGT 769
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-- 531
++ +G I ++ CE+LLSLKA+T+FA+H L + +Y NV+ +HF V ++N +
Sbjct: 770 NTEEGIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYLNVENMHFEVQHVKNTSRNKE 829
Query: 532 ---FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
+ ++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++
Sbjct: 830 AILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPEMER 888
Query: 589 IQMLYHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
+ +YH A RL+ ++Q D + +R L NLK+ +
Sbjct: 889 QRAVYHLATRLVQTARNSQLDPDGLRIYLSNLKKKY 924
>gi|301763080|ref|XP_002916958.1| PREDICTED: mutS protein homolog 4-like [Ailuropoda melanoleuca]
Length = 932
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 235/639 (36%), Positives = 394/639 (61%), Gaps = 48/639 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 308 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 362
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 363 MRLDCVHELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 413
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVC---ENEKYASIRKRIGEVIDEDV 179
I+++I LK L+ + L L++ + LL R+ C E+E++ I ++I +I++D
Sbjct: 414 ITNLIYLKHTLELVDPLKIALRNCSTPLL----RAYCGSLEDERFGIILEKIKTIINDDA 469
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ + RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F+
Sbjct: 470 RYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLAEKYSLP-LRTSFS 528
Query: 240 NRQGFYL-------SIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC 292
+ +GF++ ++P+ +LPS FI++ K ++ ++ +L +N R + + E
Sbjct: 529 SARGFFIQMTTDCTALPN----NQLPSEFIKISKVKSSYTFTSADLIKMNERCQESLREI 584
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
Y T + + L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+
Sbjct: 585 YHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT- 639
Query: 353 PLAIDGGRHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
LAI G HPILE I I NN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQI
Sbjct: 640 -LAIKQGWHPILEKISVEKPIANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQI 698
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G YVPA +S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N + +SLI++DELG
Sbjct: 699 GSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELG 758
Query: 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRL 530
R T++ +G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N
Sbjct: 759 RGTNTEEGIGICYAVCEYLLSLKAFTLFATHFLELCHIEVLYPNVENMHFEVQHVKNTSR 818
Query: 531 D-----FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ 585
+ + ++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + +
Sbjct: 819 NKEEILYTYKLCKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPE 877
Query: 586 YKQIQMLYHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
++ + +YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 878 MERQRAVYHLATRLVQTARNSQLDPDSLRMYLSNLKKKY 916
>gi|281354381|gb|EFB29965.1| hypothetical protein PANDA_005103 [Ailuropoda melanoleuca]
Length = 941
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 235/639 (36%), Positives = 394/639 (61%), Gaps = 48/639 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 317 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 371
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 372 MRLDCVHELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 422
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVC---ENEKYASIRKRIGEVIDEDV 179
I+++I LK L+ + L L++ + LL R+ C E+E++ I ++I +I++D
Sbjct: 423 ITNLIYLKHTLELVDPLKIALRNCSTPLL----RAYCGSLEDERFGIILEKIKTIINDDA 478
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ + RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F+
Sbjct: 479 RYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLAEKYSLP-LRTSFS 537
Query: 240 NRQGFYL-------SIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC 292
+ +GF++ ++P+ +LPS FI++ K ++ ++ +L +N R + + E
Sbjct: 538 SARGFFIQMTTDCTALPN----NQLPSEFIKISKVKSSYTFTSADLIKMNERCQESLREI 593
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
Y T + + L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+
Sbjct: 594 YHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT- 648
Query: 353 PLAIDGGRHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
LAI G HPILE I I NN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQI
Sbjct: 649 -LAIKQGWHPILEKISVEKPIANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQI 707
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G YVPA +S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N + +SLI++DELG
Sbjct: 708 GSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELG 767
Query: 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRL 530
R T++ +G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N
Sbjct: 768 RGTNTEEGIGICYAVCEYLLSLKAFTLFATHFLELCHIEVLYPNVENMHFEVQHVKNTSR 827
Query: 531 D-----FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ 585
+ + ++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + +
Sbjct: 828 NKEEILYTYKLCKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPE 886
Query: 586 YKQIQMLYHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
++ + +YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 887 MERQRAVYHLATRLVQTARNSQLDPDSLRMYLSNLKKKY 925
>gi|345802208|ref|XP_855503.2| PREDICTED: mutS protein homolog 4 [Canis lupus familiaris]
Length = 1081
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 237/636 (37%), Positives = 391/636 (61%), Gaps = 42/636 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 457 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 511
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 512 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 562
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y E++++ I ++I VI++D +
Sbjct: 563 ITNLIYLKHTLELVDPLKIALKNYNTPLL-RAYCGSLEDKRFGIILEKIKTVINDDTRYM 621
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 622 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLAEKYNLP-LRTSFSSAR 680
Query: 243 GFYL-------SIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
GF++ ++P+ +LPS FI++ K ++ ++ +L +N R + + E Y
Sbjct: 681 GFFIQMTIDCTALPNN----QLPSEFIKISKVKSSYTFTSADLIKMNERCQESLREIYHM 736
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
T + + L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LA
Sbjct: 737 TYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LA 790
Query: 356 IDGGRHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I G HPILE I I NN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG Y
Sbjct: 791 IKQGWHPILEKISVEKPIANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSY 850
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA +S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N + +SLI++DELGR T
Sbjct: 851 VPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELGRGT 910
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRNNR 529
S+ +G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V RN
Sbjct: 911 STEEGIGICYAVCEYLLSLKAFTLFATHFLELCHIEALYPNVENMHFEVQHVKDTSRNKE 970
Query: 530 -LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
+ + ++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++
Sbjct: 971 AILYTYKLCKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITAQIT-RQILQNQRSTPEMER 1029
Query: 589 IQMLYHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
+ +YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 1030 QRAVYHLATRLVQTARNSQLDPDSLRMYLSNLKKKY 1065
>gi|348531333|ref|XP_003453164.1| PREDICTED: mutS protein homolog 4 [Oreochromis niloticus]
Length = 816
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 245/637 (38%), Positives = 378/637 (59%), Gaps = 44/637 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKK----RSLFHMLKTTKTIGGTRLLRANLLQPLKDI 58
ID+ S NLE++ +N+ +LF +L TKT GG R LR+N+L+PL D+
Sbjct: 192 IDSASASNLELV---------VNNRNYRSDHTLFGVLNHTKTPGGARRLRSNILEPLVDV 242
Query: 59 ETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
ETINTRLD + EL+ +E+LFFGL + F + D++L PKK T +V
Sbjct: 243 ETINTRLDTIQELLEDEELFFGLKNAISHF-LDIDQLLSVLVQIPKKETFQV-------- 293
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ I+ II LK LD +P L +LK+ + LL Y + E+ ++ I ++I VI+ D
Sbjct: 294 AEAKITHIIQLKYTLDLVPRLRMLLKNRNTALL-KAYSTTLEDNRFDMILEQIKTVINYD 352
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+ + F RTQ+C+A++ I+ LDIAR+++ + + + L N+ E+ LP ++ F
Sbjct: 353 TTYLKDSFKMRTQKCYAVRPNINKFLDIARKAYTEIVDDIAGLVNQLGEKYGLP-MRTSF 411
Query: 239 NNRQGFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +GF++ + + + +G LPS FI+V KH NN +T +L N R + A E +
Sbjct: 412 STARGFFIQLKLEGLTLPEGNLPSEFIKVTKHKNNYGFTTADLMKKNSRCEEALREIFHI 471
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVN-SFAHTISTKPVDRYTRPHFTENGPL 354
+ + + L+ I E + L L++ L +LDM+++ + A TIS Y RP FT+ L
Sbjct: 472 SYVVICQLLRTIHEHIHCLYKLSDALSMLDMLLSLANACTISD-----YVRPEFTDT--L 524
Query: 355 AIDGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
AI GRH ILE I + NN +ISE +N VI+TGPNMSGKSTYL+QV L I+AQIG
Sbjct: 525 AIKQGRHAILERIGRQQPVSNNSYISEGSNFVIITGPNMSGKSTYLKQVALCQIMAQIGS 584
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA ++ RV D+IFTR+G D+ E+NSSTFM EMKE ++++ N S++SLI++DELGR
Sbjct: 585 FVPAEYACFRVADQIFTRIGVDDDFETNSSTFMLEMKEISYIIHNASDKSLIIIDELGRG 644
Query: 474 TSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV------IRN 527
TS+ +G I S CE LL LKA+T+FA+H L +L ++YPNV+ H V
Sbjct: 645 TSAEEGIGICHSVCEFLLGLKAFTLFATHFLELCQLESLYPNVENQHMQVQHTRSGDTGA 704
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
+ + + L G HYGL AE+ LPS++I+ A +I S+++++ + R + +
Sbjct: 705 ESVVYTYLLNRGSSEERHYGLRAAEMTALPSSIIQEATTIASKVSQQFLARHHTDPETQR 764
Query: 588 QIQMLYHAAQRLI-CLKYSNQDEESIRHALQNLKESF 623
Q + +YH + RL+ + S D +S+R L+ LK+ +
Sbjct: 765 Q-RAVYHLSTRLLQTARNSRLDPDSLRMYLKGLKKQY 800
>gi|449271031|gb|EMC81646.1| MutS like protein 4, partial [Columba livia]
Length = 847
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 234/636 (36%), Positives = 381/636 (59%), Gaps = 42/636 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID+ S +NLE++ + G +LF +L TKT GG+R LR+N+L+P D ETIN
Sbjct: 225 IDSASAQNLELVINNRDSRNG-----HTLFGVLNYTKTAGGSRRLRSNILEPPVDAETIN 279
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + KF +T+++L PK+ D K +++
Sbjct: 280 MRLDCVQELLQDEELFFGLQAVISKF-LDTEQLLSVLVQIPKQ--------DTVKTAESK 330
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L L+ + LL Y + E+ ++ I ++I VI++D +
Sbjct: 331 ITNLIYLKHTLELVEPLKAALRSCDTSLLKAYYHCL-EDTRFGIILEKITTVINDDTRYT 389
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A+K I+ LDIARR++ + + + + + E+ LP +K F++ +
Sbjct: 390 KGCLNMRTQKCYAVKPNINEFLDIARRTYTEIVDDIAGMITQLAEKYNLP-MKTSFSSAR 448
Query: 243 GFYL-------SIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
GF++ ++P+ G+LPS F ++ K N ++ +L +N R + + E Y
Sbjct: 449 GFFIQMTVDCSALPN----GQLPSEFTKITKMKNTYSFTSADLIKMNERCQESLREIYHM 504
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
T + + L++ I E + L L++V+ +LDM++ SFAH + + + RP FT+ LA
Sbjct: 505 TYLIVCKLLNEIYEHIHCLYKLSDVVSMLDMLL-SFAHACT---LSDHVRPEFTDT--LA 558
Query: 356 IDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I G HPILE I + + NN +++E N I+TGPNMSGKSTYL+Q+ L I+AQIG Y
Sbjct: 559 IKQGWHPILEKIAMEKPVSNNTYLTEGNNFAIITGPNMSGKSTYLKQIALCQIMAQIGSY 618
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + R+ ++IFTR+G D++E+NSSTFM EMKE +++QN +++SLI++DELGR T
Sbjct: 619 VPAEYCSFRIAEQIFTRIGMDDDIETNSSTFMKEMKEITYIIQNANDKSLIIIDELGRGT 678
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNN----- 528
S+ +G I ++ CE+LL+LKA+T+FA+H L + YPNV+ HF V +R++
Sbjct: 679 SAEEGIGICYAACEYLLNLKAFTLFATHFLELCHIDVFYPNVENYHFEVQHVRSSAGNKE 738
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
++ + + L G +YGL AEV+ LPS+VI A+ IT+ I K+ + R + +Q
Sbjct: 739 KIAYTYTLSKGCTEEKNYGLKAAEVSSLPSSVILDAKEITNHIAKQILHRQKGPPEMVEQ 798
Query: 589 IQMLYHAAQRLI-CLKYSNQDEESIRHALQNLKESF 623
+ +Y A RL+ + S D +S+R L+ LK +
Sbjct: 799 -RAVYQLAMRLVQTARNSRLDPDSLRIYLKGLKRKY 833
>gi|395537019|ref|XP_003770505.1| PREDICTED: mutS protein homolog 4 [Sarcophilus harrisii]
Length = 942
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 242/633 (38%), Positives = 387/633 (61%), Gaps = 36/633 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ H G +LF +L TKT GG+R LR+N+L+PL D+ETIN
Sbjct: 285 IDSSSAQNLELLVNNHDYRSG-----HTLFGVLNYTKTPGGSRRLRSNILEPLTDVETIN 339
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC++EL+ E+LFFGL + KF +T+++L PK+ T K S++
Sbjct: 340 MRLDCVEELLQEEELFFGLQSVISKF-LDTEQLLSVLVQIPKQET--------VKASESK 390
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L VLK + LL Y S+ E+ ++ I ++I V+++DV +
Sbjct: 391 ITNLIYLKHTLELVDPLKAVLKKCNTPLLKAYYSSL-EDNRFGKILEKIKTVVNDDVRYV 449
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A+K I+ LDIARR++ + + + + + E+ LP LK F++ +
Sbjct: 450 KGCLNMRTQKCYAVKANINEFLDIARRTYAEIVDDIAGMIMQLAEKYALP-LKTSFSSAR 508
Query: 243 GFYLSIPHKDIQ----GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
GF++ + + D G+LPS FI++ K N ++ +L +N R + + E Y T +
Sbjct: 509 GFFIQM-NLDCALLPGGQLPSEFIKITKMKNTYSFTSADLIKMNERCQESLREIYHMTYM 567
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L+ I V L L++V+ +LDM++ SFAH + + Y RP FT+ LAI
Sbjct: 568 VVCQLLGEIYPLVHCLYKLSDVVSMLDMLL-SFAHVCT---LSDYVRPEFTDT--LAIKQ 621
Query: 359 GRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
G HPILE I + + NN +I+E +N VIVTGPNMSGKSTYL+Q+ L I+AQIG +VPA
Sbjct: 622 GWHPILEKISMEKPVANNTYITEGSNFVIVTGPNMSGKSTYLKQIALCQIMAQIGSFVPA 681
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+S+ R+ ++IFTR+ D++E+NSSTFM EMKE A+++ N ++RSLI++DELGR T+
Sbjct: 682 EYSSFRITEQIFTRISMGDDIETNSSTFMKEMKEIAYIVHNANDRSLILIDELGRGTNPE 741
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRN-----NRLD 531
+G I ++ CE+LLSLKA+T+FA+H L E+ ++PNV+ +HF V +R+ +
Sbjct: 742 EGVGICYAVCEYLLSLKAFTLFATHFLELCEMDLLFPNVENIHFEVEHVRSPGRSRESVT 801
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQM 591
+ +L G +YG+ AEV+ LP ++I A+ I +IT +++ + + + + + +
Sbjct: 802 YTHKLSKGQTEEKNYGIQAAEVSSLPPSIISEAKEIRVQIT-RQLMQNQSSSPEAARKRA 860
Query: 592 LYHAAQRLI-CLKYSNQDEESIRHALQNLKESF 623
+Y A RL+ + S D ES+R L+ LK F
Sbjct: 861 VYQLATRLLQAARNSRLDSESLRLYLRGLKSKF 893
>gi|410967561|ref|XP_003990287.1| PREDICTED: mutS protein homolog 4 [Felis catus]
Length = 935
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 235/639 (36%), Positives = 390/639 (61%), Gaps = 48/639 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 311 IDSSSAQNLELLINNQDC-----RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 365
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 366 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 416
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVC---ENEKYASIRKRIGEVIDEDV 179
I+++I LK L+ + L LK+ + LL R+ C E++++ I ++I +I++D
Sbjct: 417 ITNLIYLKHTLELVDPLKIALKNCNTPLL----RAYCGSLEDKRFGIILEKIKTIINDDA 472
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ + RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F+
Sbjct: 473 RYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLAEKYSLP-LRTSFS 531
Query: 240 NRQGFYL-------SIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC 292
+ +GF++ ++P+ +LP FI++ K N+ ++ +L +N R + + E
Sbjct: 532 SARGFFIQMTTDCAALPN----NQLPPEFIKISKVKNSYTFTSTDLIKMNERCQESLREI 587
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
Y T + + L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+
Sbjct: 588 YHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT- 642
Query: 353 PLAIDGGRHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
LAI G HPILE I I NN FI+E +N +I+TGPNMSGKSTYL+Q+ L I+AQI
Sbjct: 643 -LAIKQGWHPILEKISVEKPIANNTFITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQI 701
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G YVPA +S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N + +SLI++DELG
Sbjct: 702 GSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELG 761
Query: 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRL 530
R T++ +G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N
Sbjct: 762 RGTNTEEGIGICYAVCEYLLSLKAFTLFATHFLELCHIEVLYPNVENMHFEVQHVKNTSR 821
Query: 531 D-----FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ 585
+ + ++L G GL AEV+ LP +++ A+ IT++IT ++ + + + +
Sbjct: 822 NKEAILYTYKLSRGLTEEKIMGLKAAEVSSLPPSIVLDAKEITTQIT-GQILQNQRSTPE 880
Query: 586 YKQIQMLYHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
++ + +YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 881 MERQRAVYHLATRLVQTARNSQLDPDSLRTYLSNLKKKY 919
>gi|68388163|ref|XP_688406.1| PREDICTED: mutS protein homolog 4-like [Danio rerio]
Length = 931
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 232/633 (36%), Positives = 371/633 (58%), Gaps = 34/633 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S NLE++ + +LF +L TKT GG R LR+N+L+PL +++TI
Sbjct: 304 IDAVSASNLELV-----VNHRNHRSEHTLFGVLNHTKTSGGERRLRSNILEPLLEVDTIK 358
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+R D + EL+ NE+LFF L + F + D +L PK+ T + V AK
Sbjct: 359 SRQDTIQELLQNEELFFSLKNAIAHF-LDIDELLSALVQIPKQET---IAVAEAK----- 409
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+ +I LK ++ +P L +L+ + + LL +S+ E+ ++ SI I +I++D +
Sbjct: 410 ITQVIQLKHIVELVPSLKVMLQHSTTHLLTAYCKSL-EDCRFNSILDHIKSLINDDTSYM 468
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ + LDIARR++ + + + L + E+ LP L+ F+N +
Sbjct: 469 KGSLTMRTQKCYAVRPNVSEFLDIARRAYTEVVDDIAGLVAQLGEKHNLP-LRTSFSNAR 527
Query: 243 GFYLSIPHKD---IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + + GKLP FI+V K NN +TL+L +N + A + + + +
Sbjct: 528 GFFIQMKLEGGALPGGKLPDEFIKVSKQKNNFSFTTLDLMKMNDHCEEALKDIFHMSYVV 587
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + E + L L++V+ +LDM++ S A+ + + Y RP FT+ LAI G
Sbjct: 588 VSKLLNEVHEQIHCLYKLSDVVSMLDMLL-SLANACT---ISNYVRPEFTDT--LAIQQG 641
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP+LE I I NN +ISE +N VI+TGPNMSGKST+L+QV L+ I+AQIGC+VPA
Sbjct: 642 RHPVLERISGQQPISNNSYISEGSNFVIITGPNMSGKSTFLKQVALVQIMAQIGCFVPAE 701
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
++++R+ D+IFTR+G D+ E+NSSTFM EMKE ++++ N + SLI++DELGR TS +
Sbjct: 702 YASVRIADQIFTRIGVDDDFETNSSTFMVEMKEVSYIIHNATNSSLIIIDELGRGTSPEE 761
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV------IRNNRLDF 532
G I S CE L++LKA+T+FA+H L +L T+YPNV+ H V R R+ +
Sbjct: 762 GIGICHSVCEFLINLKAFTLFATHFLELCQLQTLYPNVENQHMQVQHIRTGDGRAERVVY 821
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
+QL G +YG+ AE+ LP +I+ A+++ +I +K + + KQ +
Sbjct: 822 TYQLSRGHSEERNYGIRAAEMTNLPLDIIQEAKTVADKINQKLWAKHHSDPATLKQ-RAD 880
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESFI 624
Y A RL+ ++Q D S+RH L+ LK ++
Sbjct: 881 YRLATRLVQTARNSQLDRASLRHYLKGLKTQYL 913
>gi|148679956|gb|EDL11903.1| mutS homolog 4 (E. coli), isoform CRA_a [Mus musculus]
Length = 854
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 233/632 (36%), Positives = 392/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +++ +LF +L TKT GG+R LR+N+L+PL D+ETI+
Sbjct: 230 IDSSSAQNLELL--VNNQDYRSNH---TLFGVLNYTKTAGGSRRLRSNILEPLVDVETIS 284
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 285 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 335
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E+ ++ I +I VI++D +
Sbjct: 336 ITNLIYLKHTLELVEPLKVTLKNCSTPLLRAYYGSL-EDHRFGLILDKIKTVINDDARYM 394
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I LDIARR++ + + + + + E+ LP L+ F++ +
Sbjct: 395 KGCLNMRTQKCYAVRSNISEFLDIARRTYTEIVDDIAGMIAQLAEKYSLP-LRTSFSSSR 453
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 454 GFFIQMTTDCAALSSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 513
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 514 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 567
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + + NN +I+E +N++I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 568 WHPILEKISAEKPVANNTYITEGSNVLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 627
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 628 YASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 687
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRN-NRLDF 532
G I+++ CEHLLS+KA+T+F +H L L +Y NV+ +HF V RN + + +
Sbjct: 688 GIGISYAVCEHLLSIKAFTLFTTHFLELCHLDALYLNVENMHFEVQHVKNTSRNKDAILY 747
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AE + LPS+++ AR IT++IT++ ++ + +Q + +
Sbjct: 748 TYKLSRGLTEEKNYGLKAAEASSLPSSIVLDARDITTQITRQILQNQRSSPEMDRQ-RAV 806
Query: 593 YHAAQRLICLKYSNQDE-ESIRHALQNLKESF 623
YH A RL+ ++Q E + +R L NLK+ +
Sbjct: 807 YHLATRLVQAARNSQLEPDRLRTYLSNLKKKY 838
>gi|33519232|gb|AAQ20789.1| MutS homolog 4 variant beta [Mus musculus]
Length = 870
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 234/633 (36%), Positives = 393/633 (62%), Gaps = 36/633 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +++ +LF +L TKT GG+R LR+N+L+PL D+ETI+
Sbjct: 246 IDSSSAQNLELL--VNNQDYRSNH---TLFGVLNYTKTAGGSRRLRSNILEPLVDVETIS 300
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 301 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 351
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E+ ++ I +I VI++D +
Sbjct: 352 ITNLIYLKHTLELVEPLKVTLKNCSTPLLRAYYGSL-EDHRFGLILDKIKTVINDDARYM 410
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I LDIARR++ + + + + + E+ LP L+ F++ +
Sbjct: 411 KGCLNMRTQKCYAVRSNISEFLDIARRTYTEIVDDIAGMIAQLAEKYSLP-LRTSFSSSR 469
Query: 243 GFYLSIPHKDIQG----KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
GF++ + D +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 470 GFFIQMT-TDCAALSSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYM 528
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI
Sbjct: 529 IVCKLLSEIYEHIHGLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQ 582
Query: 359 GRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
G HPILE I + + NN +I+E +N++I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 583 GWHPILEKISAEKPVANNTYITEGSNVLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPA 642
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+++ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++
Sbjct: 643 EYASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTE 702
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRN-NRLD 531
+G I+++ CEHLLS+KA+T+F +H L L +Y NV+ +HF V RN + +
Sbjct: 703 EGIGISYAVCEHLLSIKAFTLFTTHFLELCHLDALYLNVENMHFEVQHVKNTSRNKDAIL 762
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQM 591
+ ++L G +YGL AE + LPS+++ AR IT++IT++ ++ + +Q +
Sbjct: 763 YTYKLSRGLTEEKNYGLKAAEASSLPSSIVLDARDITTQITRQILQNQRSSPEMDRQ-RA 821
Query: 592 LYHAAQRLICLKYSNQDE-ESIRHALQNLKESF 623
+YH A RL+ ++Q E + +R L NLK+ +
Sbjct: 822 VYHLATRLVQAARNSQLEPDRLRTYLSNLKKKY 854
>gi|16416651|gb|AAL18350.1|AF178957_1 MutS homolog 4 [Mus musculus]
Length = 910
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 231/632 (36%), Positives = 392/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +++ +LF +L TKT GG+R +R+N+L+PL D+ETI+
Sbjct: 286 IDSSSAQNLELL--VNNQDYRSNH---TLFGVLNYTKTAGGSRTVRSNILEPLVDVETIS 340
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 341 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 391
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E+ ++ I +I VI++D +
Sbjct: 392 ITNLIYLKHTLELVEPLKVTLKNCSTPLLRAYYGSL-EDHRFGLILDKIKTVINDDARYM 450
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I LDIARR++ + + + + + E+ LP L+ F++ +
Sbjct: 451 KGCLNMRTQKCYAVRSNISEFLDIARRTYTEIVDDIAGMIAQLAEKYSLP-LRTSFSSSR 509
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 510 GFFIQMTTDCAALSSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 569
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 570 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 623
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + + NN +I+E +N++I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 624 WHPILEKISAEKPVANNTYITEGSNVLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 683
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 684 YASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 743
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I+++ CEHLLS+KA+T+F +H L L +Y NV+ +HF V ++N + +
Sbjct: 744 GIGISYAVCEHLLSIKAFTLFTTHFLELCHLDALYLNVENMHFEVQHVKNTSRNKDAILY 803
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AE + LPS+++ AR IT++IT++ ++ + +Q + +
Sbjct: 804 TYKLSRGLTEEKNYGLKAAEASSLPSSIVLDARDITTQITRQILQNQRSSPEMDRQ-RAV 862
Query: 593 YHAAQRLICLKYSNQDE-ESIRHALQNLKESF 623
YH A RL+ ++Q E + +R L NLK+ +
Sbjct: 863 YHLATRLVQAARNSQLEPDRLRTYLSNLKKKY 894
>gi|13994197|ref|NP_114076.1| mutS protein homolog 4 [Mus musculus]
gi|30580447|sp|Q99MT2.1|MSH4_MOUSE RecName: Full=MutS protein homolog 4; Short=mMsh4
gi|13195241|gb|AAK15620.1|AF298655_1 MutS homolog 4 [Mus musculus]
gi|148679957|gb|EDL11904.1| mutS homolog 4 (E. coli), isoform CRA_b [Mus musculus]
gi|148877885|gb|AAI45839.1| MutS homolog 4 (E. coli) [Mus musculus]
gi|187953831|gb|AAI38164.1| MutS homolog 4 (E. coli) [Mus musculus]
Length = 958
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 233/632 (36%), Positives = 392/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +++ +LF +L TKT GG+R LR+N+L+PL D+ETI+
Sbjct: 334 IDSSSAQNLELL--VNNQDYRSNH---TLFGVLNYTKTAGGSRRLRSNILEPLVDVETIS 388
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 389 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 439
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E+ ++ I +I VI++D +
Sbjct: 440 ITNLIYLKHTLELVEPLKVTLKNCSTPLLRAYYGSL-EDHRFGLILDKIKTVINDDARYM 498
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I LDIARR++ + + + + + E+ LP L+ F++ +
Sbjct: 499 KGCLNMRTQKCYAVRSNISEFLDIARRTYTEIVDDIAGMIAQLAEKYSLP-LRTSFSSSR 557
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 558 GFFIQMTTDCAALSSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 617
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 618 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 671
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + + NN +I+E +N++I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 672 WHPILEKISAEKPVANNTYITEGSNVLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 731
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 732 YASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 791
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRN-NRLDF 532
G I+++ CEHLLS+KA+T+F +H L L +Y NV+ +HF V RN + + +
Sbjct: 792 GIGISYAVCEHLLSIKAFTLFTTHFLELCHLDALYLNVENMHFEVQHVKNTSRNKDAILY 851
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AE + LPS+++ AR IT++IT++ ++ + +Q + +
Sbjct: 852 TYKLSRGLTEEKNYGLKAAEASSLPSSIVLDARDITTQITRQILQNQRSSPEMDRQ-RAV 910
Query: 593 YHAAQRLICLKYSNQDE-ESIRHALQNLKESF 623
YH A RL+ ++Q E + +R L NLK+ +
Sbjct: 911 YHLATRLVQAARNSQLEPDRLRTYLSNLKKKY 942
>gi|33519230|gb|AAQ20788.1| MutS homolog 4 variant alpha [Mus musculus]
Length = 958
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 233/632 (36%), Positives = 392/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +++ +LF +L TKT GG+R LR+N+L+PL D+ETI+
Sbjct: 334 IDSSSAQNLELL--VNNQDYRSNH---TLFGVLNYTKTAGGSRRLRSNILEPLVDVETIS 388
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 389 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 439
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E+ ++ I +I VI++D +
Sbjct: 440 ITNLIYLKHTLELVEPLKVTLKNCSTPLLRAYYGSL-EDHRFGLILDKIKTVINDDARYM 498
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I LDIARR++ + + + + + E+ LP L+ F++ +
Sbjct: 499 KGCLNMRTQKCYAVRSNISEFLDIARRTYTEIVDDIAGMIAQLAEKYSLP-LRTSFSSSR 557
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 558 GFFIQMTTDCAALSSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 617
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 618 VCKLLSEIYEHIHGLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 671
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + + NN +I+E +N++I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 672 WHPILEKISAEKPVANNTYITEGSNVLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 731
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 732 YASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 791
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRN-NRLDF 532
G I+++ CEHLLS+KA+T+F +H L L +Y NV+ +HF V RN + + +
Sbjct: 792 GIGISYAVCEHLLSIKAFTLFTTHFLELCHLDALYLNVENMHFEVQHVKNTSRNKDAILY 851
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AE + LPS+++ AR IT++IT++ ++ + +Q + +
Sbjct: 852 TYKLSRGLTEEKNYGLKAAEASSLPSSIVLDARDITTQITRQILQNQRSSPEMDRQ-RAV 910
Query: 593 YHAAQRLICLKYSNQDE-ESIRHALQNLKESF 623
YH A RL+ ++Q E + +R L NLK+ +
Sbjct: 911 YHLATRLVQAARNSQLEPDRLRTYLSNLKKKY 942
>gi|158631254|ref|NP_001099947.2| mutS protein homolog 4 [Rattus norvegicus]
Length = 911
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 229/632 (36%), Positives = 394/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +++ +LF +L TKT GG+R LR+N+L+PL D+ETI+
Sbjct: 287 IDSSSAQNLELL--VNNQDYRSNH---TLFGVLNYTKTAGGSRRLRSNILEPLVDVETIS 341
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LF+GL + +F +T+++L PK+ D NA +S+
Sbjct: 342 MRLDCVQELLQDEELFYGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 392
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E+ ++ I ++I VI++D +
Sbjct: 393 ITNLIYLKHTLELVDPLKVALKNCSTPLLRAYYGSL-EDHRFGLILEKIKTVINDDARYM 451
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 452 KGCLNMRTQKCYAVRSNISEFLDIARRTYTEIVDDIAGMISQLAEKYSLP-LRTSFSSAR 510
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 511 GFFIQMTTDCAALSSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 570
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 571 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 624
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + + NN +I+E +N++I+TGPNMSGKST+L+Q+ L I+AQIG +VPA
Sbjct: 625 WHPILEKISAEKPVANNTYITEGSNVLIITGPNMSGKSTFLKQIALCQIMAQIGSFVPAQ 684
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 685 YASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 744
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRN-NRLDF 532
G I+++ CEHLLS KA+T+F +H L + T+Y NV+ +HF V RN + + +
Sbjct: 745 GTGISYAVCEHLLSTKAFTLFTTHFLELCHIDTLYLNVENMHFEVQHVKNTSRNKDAILY 804
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G HYGL AE + LP +++ AR IT++IT +++ + + + + + +
Sbjct: 805 TYKLSRGLTEEKHYGLKAAEASSLPPSIVLDAREITTQIT-RQISQNRRSSPEMDRQRAV 863
Query: 593 YHAAQRLICLKYSNQDE-ESIRHALQNLKESF 623
YH A RL+ + ++Q E + +R L NLK+ +
Sbjct: 864 YHLATRLVQVARNSQLEPDRLRTYLSNLKKKY 895
>gi|260805162|ref|XP_002597456.1| hypothetical protein BRAFLDRAFT_223065 [Branchiostoma floridae]
gi|229282721|gb|EEN53468.1| hypothetical protein BRAFLDRAFT_223065 [Branchiostoma floridae]
Length = 774
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 229/636 (36%), Positives = 368/636 (57%), Gaps = 42/636 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA++ RNLE+++ + + +LF + TKT G RL RAN+LQP D+ETI+
Sbjct: 157 IDASTARNLELLQNVRDP-----KSQHTLFGAMNFTKTAAGARLTRANILQPPCDLETIS 211
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL NE+LF+ L + R C +C+ + V+ D +
Sbjct: 212 MRLDCVAELTDNEELFYNLQSVMY-------RDTCRYCW----CSPVVMYRDTCRYC--W 258
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
S +++ + + +D LL + ++ I ++I VI +D +
Sbjct: 259 CSPVVMYRDTCRYCWPPVVMYRDPHVGLLVMPCSYTLADPRFGLIMEKIQTVIHDDTRYQ 318
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
R RTQ+CFA++ I+GLLD+ARR++ + + + + + E+ LP L+ +N+ +
Sbjct: 319 RGSLNMRTQKCFAVRPNINGLLDVARRTYTEIVDDIAEMIRQLGEKYNLP-LRTGYNSFR 377
Query: 243 GFYLSIPHKDIQG-----KLPSTFIQVVKHGNNIHCSTLELASLN-VRNKSAAGECYIRT 296
GF++ + Q KLP FI+ VK +++ +T +L S R + + E Y+ T
Sbjct: 378 GFFIQLSSAIFQDGPMPDKLPDCFIKRVKVKSSLSFTTTDLVSCRPYRIRESLNEIYLMT 437
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ + L++ +R+ + L L E + LDM+V SFAH + + Y RP FT+ LA+
Sbjct: 438 NVVVSELLNEVRDQIGCLYKLTETVATLDMLV-SFAHACT---LGNYVRPDFTDT--LAV 491
Query: 357 DGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHPIL+ I + + NN + SE +N VIVTGPNMSGKSTYL+Q+ L+ I+AQ G YV
Sbjct: 492 KQGRHPILDKISMEPPVANNTYASEGSNFVIVTGPNMSGKSTYLKQIALLQIMAQAGSYV 551
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + + RV D+IF+R+G+ D++E+N+STFM EM+E +++QN + SLI++DELGR TS
Sbjct: 552 PAEYGSFRVADQIFSRIGSDDDIETNASTFMLEMREVNYIVQNATNNSLIIIDELGRGTS 611
Query: 476 SSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV------VIRNNR 529
+ +G + + CE+LLSLKA+T FA+H L+ L ++YPNV+ HF V V ++
Sbjct: 612 NEEGVGLCHAICEYLLSLKAFTFFATHFLELTSLDSLYPNVENYHFEVLRTFSEVGNCHK 671
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINC-LQYKQ 588
+ + L G HYGL LAEV+ LPSTV++ A+ I + IT++ K++ C + +Q
Sbjct: 672 ISYTHVLSKGHTEEKHYGLQLAEVSTLPSTVVQEAKRIAAEITQQ--KKLNQTCSTESRQ 729
Query: 589 IQMLYHAAQRLI-CLKYSNQDEESIRHALQNLKESF 623
+ ++ A RL+ + S DE+S+R L++LK+ +
Sbjct: 730 QRAVFRLATRLMQAARNSRLDEDSLREYLKSLKKQY 765
>gi|290999441|ref|XP_002682288.1| predicted protein [Naegleria gruberi]
gi|284095915|gb|EFC49544.1| predicted protein [Naegleria gruberi]
Length = 722
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 221/581 (38%), Positives = 349/581 (60%), Gaps = 35/581 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D+ S+ +LEI+ L +G N +L + TKT G R++R+N+LQPL D+ ++N
Sbjct: 169 LDSASISSLEIVRSLK---YG--NSHCTLLSHIDNTKTPMGKRIIRSNILQPLLDVNSLN 223
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKKS-Q 120
RLD +E++S E+ FF + L +F + +L F K NA+ S
Sbjct: 224 ARLDSTEEILSKEKEFFEIGALLAEFSSIDLSHLLTQFTHTRK----------NARGSCH 273
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKY---ASIRKRIGEVIDE 177
TL+ +II L+ L LP L +++ + +L +++C K+ S+++ + E+I+E
Sbjct: 274 TLVLNIISLRKMLSKLPKLESCMREYNTPIL----QAICSALKFPENESLQEEMDEIINE 329
Query: 178 -DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
+L + + Q FA+ ID LLDI R+ + +T E +H + E + +LKL
Sbjct: 330 KSILSCKNK---QQQIIFAVAPEIDALLDIGRKKYIETVEEIHEHHKHCQSEAGISSLKL 386
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N R+G++ SI K+ G+ FIQ K G HCST EL SLNVR K E Y+ T
Sbjct: 387 KYNVRRGYHFSIEDKN--GESHKMFIQKSKKGKQTHCSTQELNSLNVRLKEIIDEIYLMT 444
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
++ + LV++IR +S L L+E + LLDM+ SFA ++ + Y RP F GP+AI
Sbjct: 445 DLVVNRLVESIRNHLSQLYKLSESIGLLDMLY-SFATLVTLS--NNYVRPEFCSEGPIAI 501
Query: 357 DGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + ++PN+ F++E+ N I+TG NMSGKSTYL+Q+ I ILAQIG +V
Sbjct: 502 KQGRHPVMEKQLQGQYVPNDTFMAESCNFQIITGANMSGKSTYLKQIATIQILAQIGSFV 561
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
P F +R+ DR+FTR+G D++ESNSSTFM EMKE ++QN + +SLI++DELGR++S
Sbjct: 562 PCAFCNLRICDRVFTRIGNNDSIESNSSTFMVEMKEVTNIVQNATNKSLIIIDELGRSSS 621
Query: 476 SSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-VIRNNRLDFKF 534
+ +G +IAWS EHL S++AY++FA+H LS+L ++YPN+K H V ++ L++ +
Sbjct: 622 NIEGTSIAWSIAEHLSSIRAYSLFATHYTELSDLESLYPNIKNSHLRVTTTQDGELNYLY 681
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
Q++ G YG+ LA++ GL S +I + I + +++
Sbjct: 682 QIQPGNCSEDRYGIKLAKMLGLSSKIITESEHILDELLQQK 722
>gi|432937101|ref|XP_004082354.1| PREDICTED: mutS protein homolog 4-like [Oryzias latipes]
Length = 901
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 235/636 (36%), Positives = 370/636 (58%), Gaps = 42/636 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNK----KRSLFHMLKTTKTIGGTRLLRANLLQPLKDI 58
ID+ S NLE++ +N+ + +L +L TKT GG R LR+N+L+PL ++
Sbjct: 275 IDSASAYNLELV---------VNNRDHRSEHTLLGVLNHTKTPGGARRLRSNILEPLVNV 325
Query: 59 ETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
+TIN RLD + EL+ +E+LFFGL + F + DR+L PK+ T +
Sbjct: 326 DTINMRLDAVQELLQDEELFFGLKNAICHF-LDVDRLLSVLVQIPKQET--------VQA 376
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ I+ +I LK LD +P L V K+ + LL Y S E+ ++ I ++I VI+ D
Sbjct: 377 AEAKITHVIQLKHTLDLVPQLRTVFKNCNTPLL-KAYSSTLEDNRFDMILEQIKTVINPD 435
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
++ + RTQ+C+A++ I+ LDIARR++ + + + L N+ E+ LP ++ F
Sbjct: 436 TMYLKGSLNMRTQKCYAVRPNINEFLDIARRAYTEIVDDIAVLVNQMGEKYGLP-MRTSF 494
Query: 239 NNRQGFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +GF++ + +G LP I+V KH NN +T +L +N R A E +
Sbjct: 495 STSRGFFIQLKLDGSVLPRGSLPPECIKVTKHKNNYCFTTADLMKMNGRCDEALREIFHM 554
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ + + L+ I + L L++ + +LDM++ S A+ + + Y RP FT+ LA
Sbjct: 555 SYVVICQLLSTIHGHIHCLYKLSDAVSMLDMLL-SLANACT---ISDYVRPEFTDT--LA 608
Query: 356 IDGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHPILE + NN +ISE +N VI+TGPNMSGKSTYL+QV L I+AQIG +
Sbjct: 609 IKQGRHPILERMARQQPTSNNAYISEGSNFVIITGPNMSGKSTYLKQVALCQIMAQIGSF 668
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA +++ R+ +IFTR+G D+ E+NSS+FM EMKE ++++ N S+RSLI++DELGR T
Sbjct: 669 VPAEYASFRLAGQIFTRIGVDDDFETNSSSFMLEMKEISYIIHNASDRSLIIIDELGRGT 728
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN------ 528
S+ +G I S CE LL LKA+T+FA+H L +L ++YPNV+ H V +
Sbjct: 729 SAEEGVGICHSVCEFLLGLKAFTLFATHFLELCQLESLYPNVENQHMEVQHTRSGDTGVE 788
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
+ + + LK G YGL AE+ LP +I+ AR+I S+++++ + R I+ ++Q
Sbjct: 789 HVVYTYLLKRGCSEERLYGLRAAEMTALPPNIIQEARTIASKVSQQLMARHHIDPKSHRQ 848
Query: 589 IQMLYHAAQRLI-CLKYSNQDEESIRHALQNLKESF 623
+ LY A RL+ + S D +S+R L+ LK+ F
Sbjct: 849 -RALYRLATRLLQAARNSRLDPDSLRMYLKGLKKQF 883
>gi|354468088|ref|XP_003496499.1| PREDICTED: mutS protein homolog 4-like [Cricetulus griseus]
Length = 963
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 232/638 (36%), Positives = 391/638 (61%), Gaps = 40/638 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D++S +NLE++ ++S + +LF +L TKT GG+R LR+N+L+PL D+ETIN
Sbjct: 333 VDSSSAQNLELL--VNSQDY---RNNHTLFGVLNYTKTAGGSRRLRSNILEPLVDVETIN 387
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 388 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 438
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 439 ITNLIYLKHTLELVDPLKVTLKNCSTPLLRAYYGSL-EDKRFGLILEKIKTVINDDARYM 497
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I LD ARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 498 KGCLNMRTQKCYAVRSNISEFLDRARRTYTEIVDDIAGMISQLAEKYGLP-LRTSFSSAR 556
Query: 243 GFYLSIPHKDIQG----KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
GF++ + D +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 557 GFFIQMT-TDCAAISSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYM 615
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI
Sbjct: 616 IVCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQ 669
Query: 359 GRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
G HPILE I + + NN +I+E +N+VI+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 670 GWHPILEKISAEKPVANNTYITEGSNVVIITGPNMSGKSTYLKQIALCQIMAQIGSYVPA 729
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+++ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++
Sbjct: 730 EYASFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTE 789
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRN-NRLD 531
+G I+++ CEHLLS KA+T+F +H L + +Y NV+ +HF V RN + +
Sbjct: 790 EGIGISYAVCEHLLSKKAFTLFTTHFLELCHIDALYLNVENMHFEVQHVKNTSRNKDAIL 849
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK-----RMEINCLQY 586
+ ++L G +YGL AE + LP +++ AR IT++IT + + + + +
Sbjct: 850 YTYKLSRGLTEEKNYGLKAAEASSLPPSIVLDAREITTQITTHLMDMFTGPQNQRSSPEM 909
Query: 587 KQIQMLYHAAQRLICLKYSNQDE-ESIRHALQNLKESF 623
+ + +YH A RL+ ++Q E + +R L NLK+++
Sbjct: 910 DRWRAVYHLATRLVQAARNSQLEPDKLRAYLSNLKKTY 947
>gi|345568173|gb|EGX51074.1| hypothetical protein AOL_s00054g810 [Arthrobotrys oligospora ATCC
24927]
Length = 962
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 224/631 (35%), Positives = 361/631 (57%), Gaps = 27/631 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++V+NLE+I+ L + G LF +L T T G RLLR ++LQPL D
Sbjct: 196 MVIDFSTVQNLELIQNLRNPKSGDC-----LFGLLNNTITPMGGRLLRTSILQPLTDTSI 250
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++ RLD ++EL ++E++FFG + L+ F + DR+L P + K S+
Sbjct: 251 LDDRLDAVEELATSEEMFFGTKKALQGF-GDMDRLLTSLITVPANSSLKF--------SE 301
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+ +ILLK L ++ + + L S LL + RS+C EK ++ I E I D +
Sbjct: 302 KSINDVILLKKELASITPIHEALVGCSSKLLLAV-RSLCSFEKVQVVQGFIDEAISPDAV 360
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A P R Q+C+A+K G++GLLD+AR+++ + +E +H L + E LP L++ ++
Sbjct: 361 WASTPVDLRHQRCYAVKSGVNGLLDVARQTYKEATEDLHVLFQEIAREYNLPTLEIKYDA 420
Query: 241 RQGFYLSIPHKDIQ-GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
++G+YL +P DI+ LP F+ +++ + C+TL++ N R A E + ++
Sbjct: 421 QRGYYLRLPIADIEDAPLPPIFVNIMRKKKFMECTTLDIMKRNARIGDAMTEVLLMSDRT 480
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ L+DAIR ++ L + E + +LDMI +SFA ++ + YTRP F + LAI G
Sbjct: 481 IQDLIDAIRGEMFALYKVCEGVAMLDMI-SSFATLVT---LYEYTRPEFKDT--LAIKDG 534
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E IH + IPN++F S+ I+TG NMSGKSTY++Q+ L+ I+AQIG YVPA
Sbjct: 535 RHPIREKIHKEKLIPNDVFASQQTRFQIITGCNMSGKSTYIRQIALMTIMAQIGSYVPAS 594
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ + +F R+ D +E+N STF EM+ETAF+++N +E S++++DELGR T + D
Sbjct: 595 YGCFPITTHLFARVSMDDGIEANVSTFAAEMRETAFILKNATEGSMVIIDELGRGTCTRD 654
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQL 536
G AIA + CE L+ +A+ FA+H L + + V LH V IR N +++
Sbjct: 655 GLAIAIAVCEALIEKRAFVWFATHFRELGAVLSRRAGVISLHMQVEIRPDQNLTSMLYKI 714
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK-EVKRMEINCLQYKQIQ-MLYH 594
DGP HYG+ LA++ GLPST+I A +++ I + E+KRM + + Q ++
Sbjct: 715 ADGPATEKHYGINLAKIIGLPSTIITRASEVSNTIAQNAELKRMTSKGYRKSERQRLILQ 774
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKESFID 625
+ L + S +++ L L+ F++
Sbjct: 775 LVEHLKQARSSKMTNMALKAWLGRLQAEFVE 805
>gi|340371556|ref|XP_003384311.1| PREDICTED: mutS protein homolog 4 [Amphimedon queenslandica]
Length = 781
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 227/632 (35%), Positives = 366/632 (57%), Gaps = 41/632 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID +V+NLE+I +H SLF +L TKT G RLLR+N+LQP +ETI
Sbjct: 179 IDVATVKNLELISNMHDP-----KSSHSLFGILNYTKTQQGARLLRSNILQPPCSLETIK 233
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R C+ E + NE +FF + L++F + D ++ PK T K ++
Sbjct: 234 LRQKCVQEFIDNEDIFFAVESVLKRF-LDVDHLISLLVQIPKNET--------VKSAENK 284
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+ +I +K L+ + L + +Q+ LL + + ++++ + + I +++ +D +
Sbjct: 285 INLVIYVKHCLELVISLQDAISTSQNPLLKT-FNEILSDKRFPDLLQEIQKIVHDDTHYQ 343
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ R Q+CFA+K ++G LD+AR+++ +T + + L + RE L LK +NN +
Sbjct: 344 KGSLNMRAQKCFAVKANLNGYLDVARKTYSETIDDIDELMTQLRENETLM-LKTAYNNTR 402
Query: 243 GFYLSIP------HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
GF++ I DI+ LP FI+ VK +I+C+T +L +N R + E YI T
Sbjct: 403 GFFIQITGFTNGQDLDIES-LPPVFIKAVKTKTSINCTTADLIKMNDRCSESLNEIYIMT 461
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ + L+D +R+++ L L+E + +LD+++ S AHT + V +YT P FT+ LAI
Sbjct: 462 NVVIGGLLDVLRKNIGCLYKLSECVAMLDLLL-SLAHTCT---VSKYTIPEFTDT--LAI 515
Query: 357 DGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
G HPIL+ I D +PNN + S+ N VIVTGPNMSGKSTY++QV L+ I+AQIGC+V
Sbjct: 516 RQGFHPILQKIAFEDLVPNNAYASDETNFVIVTGPNMSGKSTYMKQVALLQIMAQIGCFV 575
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA +++ R+ ++F+R+G+ +++E+N+STF EM+E +++QN+S+ SL+V+DELGR TS
Sbjct: 576 PAEYASFRLTHQVFSRIGSDNDIETNASTFTVEMREINYILQNISDDSLVVIDELGRGTS 635
Query: 476 SSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
S +G + ++ CE LL KA+T FA+H L+ L T+YPNV+ HF + +R N F
Sbjct: 636 SEEGVGLCYAICEKLLMTKAFTFFATHFLELTHLETLYPNVENYHFEMKVRTNSY---FP 692
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHA 595
+ D GL LA ++ LP +++ A I I ++ N Q K +L A
Sbjct: 693 IIDFAYGFFVLGLSLASLSMLPQSILNDAGEIIKEIQLQKAS----NQPQSKDSLVLLKA 748
Query: 596 AQ---RLI-CLKYSNQDEESIRHALQNLKESF 623
+ RL+ ++ S D+ S+R LQ+LKE F
Sbjct: 749 CRLGTRLVQTVRSSKLDQTSLRVFLQHLKEQF 780
>gi|147794016|emb|CAN68921.1| hypothetical protein VITISV_008586 [Vitis vinifera]
Length = 530
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/245 (75%), Positives = 201/245 (82%), Gaps = 31/245 (12%)
Query: 69 DELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIIL 128
DELMSNEQLFFGLSQ LRKFPKETDRVLCHFCFKPKKVT +VL V+ A+K+Q LISSIIL
Sbjct: 282 DELMSNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTKEVLGVEYARKNQMLISSIIL 341
Query: 129 LKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVA 188
LKTALDALPLL+KVLKDA+SFLLAN+Y+SVC NE YASIRKRIGEVIDEDVLHARVPFVA
Sbjct: 342 LKTALDALPLLSKVLKDAKSFLLANVYKSVCANETYASIRKRIGEVIDEDVLHARVPFVA 401
Query: 189 RTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSI 248
RTQQCFA+K GIDGLLDIARRSFCDTSEA+HNLANKYRE+ KLPNLKLPFNNRQGFY I
Sbjct: 402 RTQQCFAVKAGIDGLLDIARRSFCDTSEAIHNLANKYREDFKLPNLKLPFNNRQGFYFXI 461
Query: 249 PHKDIQGKLPSTFI-------------------------------QVVKHGNNIHCSTLE 277
P KDIQGKLPS FI QV++HGNNIHCSTLE
Sbjct: 462 PQKDIQGKLPSKFIQVLAKKFFLLILAYEHLFIFFVILFMPVRQNQVLRHGNNIHCSTLE 521
Query: 278 LASLN 282
LAS++
Sbjct: 522 LASVS 526
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 5 ATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTR 64
A ++NL EP SAL + K+ + TI TRLLRANLLQPLKDIETIN R
Sbjct: 104 AVLIKNLAAKEP--SALGLDTYYKQYYLCLAAAAATIKWTRLLRANLLQPLKDIETINAR 161
Query: 65 LDCL 68
LDCL
Sbjct: 162 LDCL 165
>gi|156367371|ref|XP_001627391.1| predicted protein [Nematostella vectensis]
gi|156214299|gb|EDO35291.1| predicted protein [Nematostella vectensis]
Length = 916
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 243/690 (35%), Positives = 380/690 (55%), Gaps = 106/690 (15%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID T+ +NLE+I+ + A + SLF +L T+T GG + ETIN
Sbjct: 255 IDVTTAKNLELIQNVRDA-----KSEHSLFGVLNYTRTAGGNK-------------ETIN 296
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK-PKKVTSKVLDVDNAKKSQT 121
RLDC+ EL E+LF+ + + +F + D L C + PK T K +++
Sbjct: 297 MRLDCIAELTEKEELFYNIQTVIGRF-LDVDH-LTSMCVQIPKHET--------VKTAES 346
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
I+++I LK L+ + L LKD + L + S+ ++ ++ +I ++I VI +D +
Sbjct: 347 KINTVIYLKHTLELIEPLQSALKDTDTPLFKAYFESL-KDPRFTAIMEKIQSVIHDDTRY 405
Query: 182 ARVPFVARTQQCFAIKGG----------ID----------GLLDIARRSFCDTSEAVHNL 221
+ RTQ+CFA+K +D GLLD+ARR++ +T + + +L
Sbjct: 406 QKGALNMRTQKCFAVKYEQTVEKYECMCLDFRPSVVRCPVGLLDVARRTYTETVDDITDL 465
Query: 222 ANKYREELKLPNLKLPFNNRQGFYLSI---PHKDIQ-GKLPSTFIQVVKHGNNIHCSTLE 277
+ E+ +LP LK+ FNN +GF++ + +D+ LP I+V K NN+ ST +
Sbjct: 466 IKQLAEKYELP-LKVGFNNTRGFFIQMQLSKEQDVDTSSLPGELIKVSKVKNNLTFSTGD 524
Query: 278 LASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTIST 337
L LN R + + E Y+ + + L+ IR+ + L LAE++ +LDM+V SFAH +
Sbjct: 525 LIKLNDRIRESLNEIYLMANVVVSELLSDIRDQIGCLYKLAELVSMLDMLV-SFAHICT- 582
Query: 338 KPVDRYTRPHFTENGPLAIDGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKS 396
+ Y RP FT+ LAI GRHPIL+ I H +PNN++ +E N +I+TGPNMSGKS
Sbjct: 583 --LSDYVRPEFTDT--LAIKQGRHPILDKILHETPVPNNMYAAEGTNFLIITGPNMSGKS 638
Query: 397 TYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVM 456
TYL+Q+ L+ ++AQIGCYVPA +++ R+ D+IF+R+G+ D++E+NSSTFM EMKE +++
Sbjct: 639 TYLKQIALLQVMAQIGCYVPAEYASFRLADQIFSRIGSDDDIETNSSTFMLEMKEINYII 698
Query: 457 QNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516
QN S++SLI++DELGR TSS +G I ++ CEHLL +KA+T FA+H L+ + +YPNV
Sbjct: 699 QNASDKSLIIVDELGRGTSSEEGVGICYAVCEHLLGIKAFTFFATHFLELTTMDELYPNV 758
Query: 517 KILHF----------------YVVIRN---------NRLDFKFQ---------------- 535
+ LHF Y+ R N L FQ
Sbjct: 759 ENLHFEIQSQVCAKVSSTFLLYIEGRKFVCNFPRFFNTLRVGFQRVYSNEAGQDKIVYSH 818
Query: 536 -LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYH 594
L G HYGL LAE++ LP ++I A++++ +I+K E + +I + K+ + +
Sbjct: 819 VLSKGRMQERHYGLQLAEISTLPQSIIREAKAVSQQISKTE-QSSKILSAEAKRSKAEFR 877
Query: 595 AAQRLI-CLKYSNQDEESIRHALQNLKESF 623
A +LI + S D+ +R L LK F
Sbjct: 878 LATKLIQAARNSCLDDNGLRAYLIGLKAQF 907
>gi|327276683|ref|XP_003223097.1| PREDICTED: LOW QUALITY PROTEIN: mutS protein homolog 4-like [Anolis
carolinensis]
Length = 859
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 231/632 (36%), Positives = 381/632 (60%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID+TS NLE+I G +LF +L TKT GG+R LR+N+L+PL D +TIN
Sbjct: 235 IDSTSALNLELITNNRDPRNG-----HTLFGVLNYTKTPGGSRRLRSNILEPLVDADTIN 289
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
TRLD + EL+ NE+ FFGL + +F +T+++L PK+ D NA +S+
Sbjct: 290 TRLDSVQELLQNEEFFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTFNASESK-- 340
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK ++ LL Y S+ E++++ I ++I VI++D +
Sbjct: 341 ITNLIYLKHTLELVEPLKDALKVYKTPLLKAYYSSL-EDKRFGIILEKIKTVINDDTRYT 399
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A+K I+ LDIARR++ + + + + + E+ LP LK F+ +
Sbjct: 400 KGCLNMRTQKCYAVKPNINEFLDIARRTYTEIVDDIAGMITQLAEKYSLP-LKTSFSLAR 458
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + G+LPS F ++ K N + ++ +L +N R + + E Y T +
Sbjct: 459 GFFIQMTADCAAIHNGQLPSEFTKITKMKNVYNFTSPDLMKMNERCQESLREIYHMTYLI 518
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM+ SFAH + + Y RP FT+ LAI G
Sbjct: 519 VCKLLSEIYEHIHCLYKLSDTVSMLDML-QSFAHACT---LSDYVRPEFTDT--LAIKQG 572
Query: 360 RHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HP+LE I + NN +I+E +N+VI+TGPNMSGKSTYL+Q+ L I+AQIG +VPA
Sbjct: 573 WHPVLEKISLEKPVCNNTYITEGSNVVIITGPNMSGKSTYLKQIALSQIMAQIGSFVPAE 632
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ ++IFTR+G D++E+NSSTFM EMKE +++QN ++RSLI++DELGR TS +
Sbjct: 633 YSSFRIAEQIFTRIGMDDDIETNSSTFMQEMKEITYIIQNANDRSLIIIDELGRGTSPEE 692
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNN-----RLDF 532
G I ++ CE+LL+LKA+T+ A+H L ++ T+YPN + +F V +R++ ++ +
Sbjct: 693 GIGICYAVCEYLLNLKAFTLLATHFLELCQIDTLYPNAENNYFKVQHVRSSSDIREKIAY 752
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
+ L G +YGL AEV+ LP ++I A+ I + ++++ +++ N + + + +
Sbjct: 753 TYMLSKGHTEEKNYGLKAAEVSSLPPSIICDAKEIITLVSRQMMQQQR-NTSETLKERAI 811
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
Y A L+ ++Q D S++ L+ LK+ +
Sbjct: 812 YRLANMLVQTARNSQLDPNSLQIYLKGLKKKY 843
>gi|301613266|ref|XP_002936134.1| PREDICTED: mutS protein homolog 4-like [Xenopus (Silurana)
tropicalis]
Length = 883
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 233/632 (36%), Positives = 376/632 (59%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID+ S +NLE++ S +LF +L TKT GG+R LR+N+L+PL D++TIN
Sbjct: 254 IDSVSAQNLELLVNKRD-----SRNDHTLFGVLNYTKTSGGSRRLRSNILEPLVDLKTIN 308
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
TRLDC+ E + +E+LFF L L +F +T+ +L + PK+ D + T
Sbjct: 309 TRLDCVQEFLQDEELFFSLQSVLSRFL-DTENLLSNLIQIPKQ--------DTVSSADTK 359
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
IS II LK + + L LK+ ++ LL Y S+ E+ ++ I ++IG VI++D +
Sbjct: 360 ISYIISLKHTIKLVEPLKVALKNCKTPLLKAYYNSL-EDNRFGIILEKIGAVINDDTRYT 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A+K I+ LLDI RR++ + + + L ++ E+ L +LK FN +
Sbjct: 419 KGCLSTRTQKCYAVKENINELLDIDRRAYAEIVDDISGLISQLSEKYNL-SLKTSFNTAR 477
Query: 243 GFYLSI---PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + + +LPS F++V + N+ +T++L LN R + + E Y R+ +
Sbjct: 478 GFFIQMNIDANMPTTNQLPSEFVKVTRIKNSCCFTTVDLLKLNERCQESLKEIYHRSYLI 537
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 538 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 591
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + + NN +I+E N VI+TGPNMSGKSTYL+Q+ L I+AQ+G +VPA
Sbjct: 592 WHPILEKIAMEKPVSNNTYITEGNNFVILTGPNMSGKSTYLKQIALNQIMAQLGSFVPAE 651
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ ++ ++IFTR+G D++E+N STFM EMKE +++QN + +SLI++DELGR TS+ +
Sbjct: 652 YASFKIAEQIFTRIGMDDDIETNCSTFMKEMKEVNYIIQNANNKSLILIDELGRGTSTEE 711
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD------F 532
G I ++ CE+LL LKA+T+F +H L L+TIYPN + +F V + + + +
Sbjct: 712 GIGICYAVCEYLLGLKAFTLFVTHYLELCHLSTIYPNSENYYFEVQHKREKSEDRESILY 771
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
+ L G +YGL AE++ LP +++ A +I+ +I K +R E +Q +
Sbjct: 772 TYLLSKGQTKEKNYGLKAAELSSLPLLLLKDANNISMQIADKLTRRQESTPETVRQT-AV 830
Query: 593 YHAAQRLI-CLKYSNQDEESIRHALQNLKESF 623
Y A RLI + S D +S+R L++LK+ +
Sbjct: 831 YQLAVRLIQASRNSCLDSDSLRTYLKHLKKIY 862
>gi|47230170|emb|CAG10584.1| unnamed protein product [Tetraodon nigroviridis]
Length = 836
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 238/686 (34%), Positives = 373/686 (54%), Gaps = 92/686 (13%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKR----SLFHMLKTTKTIGGTRLLRANLLQPLKDI 58
ID+ S NLE++ +N+ R SL +L TKT GG R LR+N+L+PL D+
Sbjct: 176 IDSASASNLELV---------VNNRDRRSEHSLLGVLNHTKTAGGARRLRSNILEPLVDV 226
Query: 59 ETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
+TIN RLD + EL+ E LFFGL + F +TD++L PK+ T ++
Sbjct: 227 DTINMRLDSIQELLQEEDLFFGLKNVIGHF-LDTDQLLSVLVQIPKQETVQI-------- 277
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ I+ +I LK LD +P L VLK+ S LL Y + E+ ++ I ++I VI++D
Sbjct: 278 AEAKITHVIQLKHTLDLVPQLKMVLKNCSSSLL-KAYSTSLEDSRFDVILEQIKTVINDD 336
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+ + RTQ+C+A++ I+ LDIARR++ + + V L N+ E LP ++ F
Sbjct: 337 TTYLKGSLHMRTQKCYAVRPNINEFLDIARRAYTELVDDVAGLVNQLGENYGLP-MRTSF 395
Query: 239 NNRQGFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +GF++ + + + +GKLPS FI++ K NN +T +L +N R A E +
Sbjct: 396 STARGFFIQMKLEGVVLPEGKLPSEFIKISKQRNNYSFTTADLIKMNDRCDEALREIFHM 455
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ + + L+ I E + L L++ + +LDM+V S A+ + + Y RP FT+ LA
Sbjct: 456 SYVVIRQLLSTIHEHIHCLYKLSDAVSMLDMLV-SLANACT---ISDYVRPDFTDT--LA 509
Query: 356 IDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHPILE I + NN +I E N VI+TGPNMSGKSTYL+QV L I+AQIG Y
Sbjct: 510 IKAGRHPILERIAGQLPVSNNSYIYEGCNFVIITGPNMSGKSTYLKQVALCQIMAQIGSY 569
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA +++ R+ D+IFTR+G D+ E+NSSTFM EMKE ++++ N+S+RSL+++DELGR T
Sbjct: 570 VPAAYASFRIADQIFTRIGVDDDFETNSSTFMLEMKEISYILHNISDRSLVIIDELGRGT 629
Query: 475 SSSDGFAIAWSCCEHLLS------------------------------------------ 492
S+ +G + S CE LLS
Sbjct: 630 SAEEGIGLCHSVCEFLLSLKVQHNTLISPLNSHSLHSNENRITRIPSLYTAHTVVCYFLV 689
Query: 493 ---------LKAYTIFASHMENLSE----LATIYPNVKILHFYVVIRN-NRLDFKFQLKD 538
LKA+T+FA+H L +A ++++ H + + + + L+
Sbjct: 690 FLMGLFHGCLKAFTLFATHFLELCHWSLSIACGDQHMEVQHTRSSDSGADSVVYTYALQR 749
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQR 598
G HYGL AE+ LPS +I+ A++I S+++++ + R + +Q + YH A R
Sbjct: 750 GCSEDRHYGLRAAEMTSLPSDIIQEAKTIASKVSQQLLSRHHCDPETLQQ-RAKYHLANR 808
Query: 599 LI-CLKYSNQDEESIRHALQNLKESF 623
L+ + S D +S+R L+ LK+ +
Sbjct: 809 LLQAARNSRLDPDSLRMYLKGLKKQY 834
>gi|242045670|ref|XP_002460706.1| hypothetical protein SORBIDRAFT_02g033480 [Sorghum bicolor]
gi|241924083|gb|EER97227.1| hypothetical protein SORBIDRAFT_02g033480 [Sorghum bicolor]
Length = 235
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 169/232 (72%), Positives = 200/232 (86%)
Query: 72 MSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKT 131
MSNE+LFFGL+Q LRKFPKE+D+VLCHFCFKPKKV +VL N +KSQ LIS II+LKT
Sbjct: 1 MSNEELFFGLTQGLRKFPKESDKVLCHFCFKPKKVRDEVLKPANGRKSQKLISDIIVLKT 60
Query: 132 ALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQ 191
ALDA+P L+KVLK A+S LL NIY++VCEN KYA++RKRIG+VIDEDV+H+R PFVA TQ
Sbjct: 61 ALDAIPFLSKVLKGAKSVLLHNIYQTVCENPKYANMRKRIGDVIDEDVVHSRAPFVACTQ 120
Query: 192 QCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHK 251
+CFA+K GIDGLLD+ARRSFCDTSEAVHNLA +YREE +PNLK+P+N RQGFY IP K
Sbjct: 121 ECFAVKAGIDGLLDVARRSFCDTSEAVHNLAKQYREEYNMPNLKMPYNTRQGFYFMIPQK 180
Query: 252 DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEAL 303
DI +LP+ FIQVV+HG NIHCS+LELASLNVRNK+AA EC+ RTE+CLE
Sbjct: 181 DITDRLPNKFIQVVRHGKNIHCSSLELASLNVRNKTAAAECFSRTELCLEGF 232
>gi|414590260|tpg|DAA40831.1| TPA: hypothetical protein ZEAMMB73_277658 [Zea mays]
Length = 235
Score = 367 bits (943), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 169/232 (72%), Positives = 201/232 (86%)
Query: 72 MSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKT 131
MSNE+LFFGL+Q LRKFPKE+D+VLCHFCFKPKKVT KVL N +KSQ LIS II+LKT
Sbjct: 1 MSNEELFFGLTQGLRKFPKESDKVLCHFCFKPKKVTDKVLKPANGRKSQMLISDIIVLKT 60
Query: 132 ALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQ 191
ALDA+P L+KVLK A+SFLL NIY++VCEN KYA++RKRIG+VIDEDV+H+R PFVA TQ
Sbjct: 61 ALDAIPFLSKVLKGAKSFLLHNIYQTVCENPKYANMRKRIGDVIDEDVVHSRAPFVACTQ 120
Query: 192 QCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHK 251
QCFA+K GIDGLLD+ARRSFCDTSEA+HNLA KYR++ +PNLK+ +N RQGFY IP K
Sbjct: 121 QCFAVKAGIDGLLDVARRSFCDTSEAIHNLAKKYRDDYNMPNLKITYNIRQGFYFIIPQK 180
Query: 252 DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEAL 303
DI +LP+ FIQVV+HG N+HCS+LELASLNVRNKS+A EC+ RTE+CLE
Sbjct: 181 DITDRLPNKFIQVVRHGKNLHCSSLELASLNVRNKSSAAECFSRTELCLEGF 232
>gi|443721465|gb|ELU10757.1| hypothetical protein CAPTEDRAFT_92723, partial [Capitella teleta]
Length = 794
Score = 357 bits (917), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 209/606 (34%), Positives = 359/606 (59%), Gaps = 30/606 (4%)
Query: 30 SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFP 89
+LF L +T+T G RLLRAN+LQP + +TIN RLD + +L+ +E+ FF L + +F
Sbjct: 177 TLFGTLNSTRTHMGFRLLRANILQPPCNGDTINMRLDVVSDLIRDEENFFSLQAIVGRF- 235
Query: 90 KETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSF 149
+ D ++ PK+ +N K + IS +I LK L+ + L VL ++++
Sbjct: 236 LDVDHLISACVQVPKE--------ENIKTHEAKISHVICLKHTLELVEPLKNVLAESENA 287
Query: 150 LLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARR 209
LL + + ++ +Y I +++ VI ED + R +R Q+CFA+K I+GLLD+ARR
Sbjct: 288 LLKACHVQL-QDTRYQLILEKLSVVIAEDSRYQRGTLASRMQKCFAVKPNINGLLDVARR 346
Query: 210 SFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGK---LPSTFIQVVK 266
S+ + E +++L + + +P +K +N+ +GF++S+ D K LP+ +++ K
Sbjct: 347 SYSEVVEDINDLIQEEARKNSMP-IKCNYNSARGFHMSLYLGDKTKKTYNLPAEYVKTSK 405
Query: 267 HGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDM 326
N + + EL +N R K + E Y+ + + + L+ IR+ + L L+E + +LDM
Sbjct: 406 FKNTLSFTCKELIKMNDRVKDSLREIYMMSNMVVSQLLSDIRQHMDCLYKLSECVAMLDM 465
Query: 327 IVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPNNIFISEAANMV 385
++ F H + + Y RP FT+ LA+ GGRHPIL+ I + + NNI+ S +N +
Sbjct: 466 LI-GFTHNCT---LSDYVRPEFTDT--LAVKGGRHPILDKISCESPVANNIYASHESNFI 519
Query: 386 IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTF 445
++TGPNMSGKSTYL+Q+ L+ ++AQ+G +VPA +++ R+ D+IF+R+G+ +++ESN+S+F
Sbjct: 520 VITGPNMSGKSTYLRQIALLQVMAQVGSFVPAEYASFRLTDQIFSRIGSEEDIESNASSF 579
Query: 446 MTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505
M EMK+ +++++ S++SLI+MDELGR T+ + I + CEHL+S KA++ A+H
Sbjct: 580 MVEMKDMNYILRSASDKSLIIMDELGRGTNVDEAIGICHAICEHLISTKAFSFLATHFAK 639
Query: 506 LSELATIYPNVKILHFYV------VIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPST 559
L++L +YPNV HF V + N+L + L+ G YG+ LA + LP
Sbjct: 640 LTDLEALYPNVTNYHFAVERMFSEEAQGNKLIYTHSLQRGKTMETQYGIDLAASSTLPVE 699
Query: 560 VIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI--CLKYSNQDEESIRHALQ 617
++E AR I+S + ++ +R E + + + ++ R++ S +ES++ LQ
Sbjct: 700 LVENARKISSVLGQRTERREEEDEGAVYE-RAVFKLGSRIMQAARNSSKMADESLKSYLQ 758
Query: 618 NLKESF 623
NLKE +
Sbjct: 759 NLKEQY 764
>gi|330928692|ref|XP_003302366.1| hypothetical protein PTT_14143 [Pyrenophora teres f. teres 0-1]
gi|311322330|gb|EFQ89531.1| hypothetical protein PTT_14143 [Pyrenophora teres f. teres 0-1]
Length = 906
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 215/637 (33%), Positives = 364/637 (57%), Gaps = 37/637 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+++ L + LF +L T T G RLLR N+LQPL D E
Sbjct: 211 MMIDVSTIYSLELVQNLRDP-----KSRDCLFGLLNETLTPMGARLLRNNVLQPLTDPEV 265
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+NTR +D++ E+LFF L+ F + DR+L P KVT + ++
Sbjct: 266 LNTRYAAVDDMTKKEELFFATRAALKNF-LDADRILTALIVTPTKVT--------LQTTE 316
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+ +I+LK ++++ + + L + +L N+ R +C E A +++ I VI+ED
Sbjct: 317 QAINQVIMLKQFVNSVNPIFEALTGTAATMLNNV-RELCAPENVAPVQELIDSVINEDTT 375
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+AR P R Q+ +A+K G++GLLD+AR ++ + +E + + + +E + L L F N
Sbjct: 376 YARQPLELRNQRIYAVKSGVNGLLDVARTTYKEVTEDAYQHSTELSQEYGI-RLDLKFEN 434
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAA-------GEC 292
+ FY+ I ++ K LP F V++ N++ C TLEL RN+ A E
Sbjct: 435 ARQFYIKIATSELDDKVLPPIFTNVIRRKNHVECQTLELMK---RNQKACLQINVSHQEV 491
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
+ ++ +E L+D +R +SV+ + E + +LDMIV +FAH ++ V+ YT+P T+
Sbjct: 492 ILMSDQAVETLIDEVRSHMSVMFKICEAIAMLDMIV-AFAHLVT---VNNYTQPQLTDT- 546
Query: 353 PLAIDGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
LAI+ GRHPI E+I F+PN+++ ++ I+TG NMSGKSTY++ V L+ I+AQI
Sbjct: 547 -LAIEAGRHPIKENIMQTKFVPNDVYATQQTRFQIITGCNMSGKSTYIRSVALMTIMAQI 605
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
GCYVPA +++ ++ ++F R+G DN+E+N STF EM++ AF+++NV RSL+++DELG
Sbjct: 606 GCYVPASYASFPILHQLFARLGMDDNIETNVSTFAAEMRDIAFILRNVDRRSLVIIDELG 665
Query: 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-NRL 530
R TS+ DG AIA + E L+S +A FA+H ++L+ + V+ LH V I + + +
Sbjct: 666 RGTSTRDGLAIALAIAEALVSSRALVWFATHFKDLATIMGERAGVQNLHLAVQIDDEHSM 725
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN--CLQYKQ 588
++ G HYGL LA V LP V+E A + ++ + ++R + + L+ K+
Sbjct: 726 TMLYRATQGVVREIHYGLTLARVVPLPPGVVEHATRVAQKVERHMLQRKKASETVLREKR 785
Query: 589 IQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFID 625
+++ + + L+ + E + L+ L+ F++
Sbjct: 786 RKLILNLKEHLVQAHNGVLEGEVLTAWLKELQNEFVE 822
>gi|405950552|gb|EKC18533.1| MutS-like protein 4 [Crassostrea gigas]
Length = 995
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 220/630 (34%), Positives = 349/630 (55%), Gaps = 76/630 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDAT+ NLE+++ + + +L+ +L TKTIGG RLLRAN+LQP D+ TI
Sbjct: 426 IDATTAVNLELLQNIRDP-----KSEHTLYGVLNYTKTIGGARLLRANILQPPCDLGTIT 480
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + EL E +F + + +F + D VL PK+ T K + +
Sbjct: 481 MRQEVVSELTEKEDVFDNIHTVIARF-LDIDHVLSMCVQIPKQETLKTAEAN-------- 531
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I++II LK L+ + L L + ++ L+ + Y+S+ ++ +YA ++ +I VI +D +
Sbjct: 532 INNIIYLKHILELVDPLRNALSNCENRLMKHFYKSL-DDGRYALMKAKISSVIHDDTKYQ 590
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+CFA+KG I+GLLDI R ++ E ++N+AN+ EE LP + +N+ +
Sbjct: 591 KGMLHMRTQKCFAVKGSINGLLDIGRGTYAGIIEDINNVANQLAEEYSLP-IVTSYNSTR 649
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
GF+L ++C R + A E Y+ T I +
Sbjct: 650 GFFL-----------------------QLNCGPKN------RAREALDEIYLVTNIVVTE 680
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L+ +R L L+E + ++DM+ SFAH + + Y +P FT++ A+ GRHP
Sbjct: 681 LLGDLRNHFGCLYKLSEAVSMIDML-QSFAHACT---LSSYVKPEFTKD-TFAVKQGRHP 735
Query: 363 ILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
ILE I D IPNNI+ +E AN ++TG NMSGKSTYL+Q+ L+ I+AQIGC++PA + +
Sbjct: 736 ILERITPDMPIPNNIYATEDANFNLITGANMSGKSTYLRQIVLLQIMAQIGCFIPAEYGS 795
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
R+ D+IF+R+G+ D++ESNSSTFM EMKE +++QN+S RSLI+MDELGR TS +G
Sbjct: 796 FRITDQIFSRIGSDDDIESNSSTFMLEMKEVNYIIQNISHRSLIIMDELGRGTSQEEGVG 855
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD------FKFQ 535
I S CE+LL KA+ FA+H +L L +YPNV+ F ++ N D +
Sbjct: 856 ICHSVCEYLLRFKAFVFFATHFMDLGHLENLYPNVQNYSFMILKTFNENDQSEKVVYTHV 915
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHA 595
L G +YG+ LAE++ LP R + EV + + ++ ++++
Sbjct: 916 LTKGLNKEENYGIRLAELSTLP------------RDKQHEVDK------EMREKRIVFKL 957
Query: 596 AQRLICL-KYSNQDEESIRHALQNLKESFI 624
A RL+ L + S + ++ +++LK +I
Sbjct: 958 AARLVQLSRNSRLSKTDLKSYMKSLKAQYI 987
>gi|281202018|gb|EFA76223.1| DNA mismatch repair protein [Polysphondylium pallidum PN500]
Length = 968
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 220/653 (33%), Positives = 364/653 (55%), Gaps = 57/653 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M IDA S++NLE++ ++L G+ ++ +LF L TKT G RLL NL+QP D+ T
Sbjct: 333 MQIDAESIKNLELVR---NSLNGS--RESTLFSSLNHTKTPQGARLLIRNLVQPPNDMAT 387
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + + E++SNE+ FF + L KF K+ D++L +F K + + + Q
Sbjct: 388 IRMRQESIKEILSNERSFFTIGPILSKF-KDLDQMLVNFTLKTDFNSMSITKI------Q 440
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV- 179
I SII K +D LP L L + ++ LL IY ++ E I + DE V
Sbjct: 441 KFIKSIIEFKNIIDLLPKLHDSLSNMKTPLLKAIYENISNLE--------IKTISDETVK 492
Query: 180 -LHARVPFVART---QQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
+ R+P + ++IK GI+GLLD+ ++++ + ++ L Y+++ K+P +K
Sbjct: 493 YFNERLPSNKSSLANNIVYSIKDGINGLLDVCKKTYNEILNDINKLVTHYQDQYKMPGIK 552
Query: 236 LPFNNRQGFYLSIPHKDIQ-GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
L N +GF+LSI K+ +LPS FI+ N T +L SL+ R E +
Sbjct: 553 LHHNTGKGFHLSIYCKNRSLMQLPSIFIRATFKKNKCEFVTDDLVSLSRRVNEVFDEIVL 612
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
T I + L+D RE +S L ++E + LLD++ + ++ V P F E GPL
Sbjct: 613 LTSISVSNLIDFYRERISSLFNVSESISLLDLLFSLGSYVTLNDTV----CPQFYEKGPL 668
Query: 355 AIDGGRHPIL----------ESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCL 404
AI G HP HN F+PN+ +++ AN I+ GPNMSGK+TY++QV L
Sbjct: 669 AIKQGYHPFYLYKSSKNRLDNDNHNYFVPNDTMLTQTANFHILHGPNMSGKTTYIEQVAL 728
Query: 405 IVILAQIGCYVPAHFSTIRVV--------DRIFTRMGTVDNLESNSSTFMTEMKETAFVM 456
+ ILA IG YVPA F + ++ D+IFTR+GT DNL+SN+STFMTEM E ++V+
Sbjct: 729 LSILAHIGSYVPAKFMSCPIITNNSILPFDKIFTRIGTSDNLQSNASTFMTEMTEISYVL 788
Query: 457 QNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516
+ ++RSL+++DELGR TS+ +G +IAW+ E + ++ T+F +H + L ++ IYP +
Sbjct: 789 ECATDRSLVIVDELGRGTSNIEGSSIAWAISEKIANIGCMTLFVTHYQELLGMSFIYPMI 848
Query: 517 KILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ H V +++L + + L + V YG+ +A +AG+ VI+ ARS++ ++ ++
Sbjct: 849 RNYHLSVTREDDQLKYGYSLSESVSTVHRYGIDIAMIAGIDEQVIQIARSVSDQL---DL 905
Query: 577 KRMEINCLQYKQIQMLYHA------AQRLICLKYSNQDEESIRHALQNLKESF 623
++ + + Q Q ++ A Q+L+ L++SN +++ I + +L+E +
Sbjct: 906 QQKDQDATSKDQQQTVHPARTAFQLVQKLLNLEHSNYNDQQITDYIADLREQY 958
>gi|296422561|ref|XP_002840828.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637053|emb|CAZ85019.1| unnamed protein product [Tuber melanosporum]
Length = 828
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 206/633 (32%), Positives = 353/633 (55%), Gaps = 59/633 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++V +LE+I+ + LF +L T T G RLLRA++LQPL D+ T
Sbjct: 192 MLIDFSTVHSLELIQNIQDP-----KSTECLFGLLDNTLTAMGARLLRASILQPLTDLST 246
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+N RLD ++E +E++F Q L+ F + DR+L P K + K S+
Sbjct: 247 LNARLDAVEEFTQHEEMFSQARQALKPF-LDMDRLLTALITMPVK--------PSLKHSE 297
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I++II+LK +L ++ + L A+S+LL +I R++C++++ ++ I +I+EDV+
Sbjct: 298 QAINNIIILKQSLSSIAPVYDSLGSARSWLLVSI-RNLCDSDQIEPVQNLISSIINEDVV 356
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
++ P R Q+C+A+K G++GLLD+AR+ + + +E +H L +E LP L+L F
Sbjct: 357 FSKSPLDLRNQRCYAVKSGVNGLLDVARQVYKEVTEDMHQLVEDISKEYDLP-LELKFET 415
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+G+YL +P +I+ K LP F+ VVK + S LE+ N + + E + ++
Sbjct: 416 GRGYYLRLPASEIEDKPLPPVFVNVVKRKKIVEFSALEMLKCNAKISDSLAEVVLMSDNS 475
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ LV+ IR++V L +AE + +LDMI+ SFA + + G
Sbjct: 476 VQKLVEDIRKEVPALYRVAEGIAVLDMIL-SFAQLCTIQDY-----------------AG 517
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPN-----MSGKSTYLQQVCLIVILAQIGC 413
RHPI E IH D F PN+++ S+ + +V+ ++ +STYL+ + L ++AQIG
Sbjct: 518 RHPIHEKIHKDQFFPNDVYASQQSRYALVSFARQVLAALTAQSTYLRSIALTAVIAQIGS 577
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA +++ + R+F R+ D +E+N+STF +EM+ETAF++ NV SL++MDELGR
Sbjct: 578 FVPAQYASFPITRRLFARVSMDDGIEANASTFASEMRETAFILGNVERGSLVIMDELGRG 637
Query: 474 TSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-NRLDF 532
TS+ DG A+A + CE L+ +A FA+H ++L+ + V LH V + + N +
Sbjct: 638 TSTRDGLALAVAVCEALIESRALVWFATHFKDLARILARRAGVVNLHLRVQMEDENTMTM 697
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
+++ DG +YGL LA + GLP +V++ A +++ + + K M
Sbjct: 698 LYKVTDGAVEDKNYGLTLARLVGLPQSVLDRAAAVSEVLVGRHEKNM------------- 744
Query: 593 YHAAQRLICLKYSNQDEESIRHALQNLKESFID 625
Q LI + N +E++++ L L++ F++
Sbjct: 745 ----QTLIRARDGNMEEDALQPWLNRLQDEFVN 773
>gi|428165372|gb|EKX34368.1| Msh4 meiosis-specific ZMM crossover interference complex protein,
muts [Guillardia theta CCMP2712]
Length = 703
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 214/557 (38%), Positives = 332/557 (59%), Gaps = 28/557 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID + NLEII H+A K SLF ++ KT G RLLR N+LQPL + +
Sbjct: 166 LQIDPRTAANLEII---HNA---RDVKNASLFGIMNFCKTHMGQRLLRTNMLQPLSYLSS 219
Query: 61 --INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
I RLD L+ L+ NE+ F+ +S+ L FP V PK T + + +K
Sbjct: 220 GKIQERLDFLEILLKNEEAFYEISEKLPPFPDLEYIVTATLI--PKCGTQCI----SVEK 273
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQS--FLLANIYRSVCENEKYASIRKRIGEVID 176
Q+LIS I+ +K AL+ LA LK + +L + S+ E K S++ I ++
Sbjct: 274 CQSLISKILNMKNALNLATGLANTLKKMKGSCAILDKMLDSLSE-PKLDSVKNAIDRILA 332
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
++ A+ +++ Q+CFA++ GID LLD+AR+S+ D + ++NLA +YR+E + ++K+
Sbjct: 333 DESFPAKGNILSQVQRCFALRAGIDSLLDVARQSYNDVIDDIYNLAQQYRDEYGIGSIKV 392
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N R+G++LS+ DI LP FIQ + G+ C+T +LASL R+ + E Y+ T
Sbjct: 393 VYNIRRGYHLSM-KSDIS-SLPPIFIQKSQKGHCTLCTTEDLASLANRHNESVQEIYLMT 450
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAH--TISTKPVDRYTRPHFTENGPL 354
LE +I L +A+ + LLDM+ SFAH ++S++P + RP F +GPL
Sbjct: 451 GRILEYNHLSIVRFCRCLLDVADSISLLDML-RSFAHMISVSSQP---FVRPQFYPDGPL 506
Query: 355 AIDGGRHPILESIH-NDFIPNNIFISE--AANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
AI GRHP+ E + F+ NN + +++ ++TGPNMSGKS YL+QV LI+ILA +
Sbjct: 507 AIRQGRHPMCEILAPGSFVSNNTMMKPRTSSSFCVLTGPNMSGKSCYLRQVALIIILAHM 566
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G ++PA + +D+IF+R+GT D+ ES++STF EM+E + ++ + ++ SLI++DELG
Sbjct: 567 GSFIPAEYGCFPSIDKIFSRIGTSDDFESSASTFYLEMQEMSHIIGHATQHSLIIIDELG 626
Query: 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
R TS+ DG AIAW+CCEHL++L+A T+FA+H L +LA+IYPNV+ V L
Sbjct: 627 RGTSNQDGIAIAWACCEHLINLRALTLFATHYSELQQLASIYPNVENWTLSVEATKGGLQ 686
Query: 532 FKFQLKDGPRHVPHYGL 548
F +++ G YG+
Sbjct: 687 FLYKVIKGFCQEGSYGM 703
>gi|451998382|gb|EMD90846.1| hypothetical protein COCHEDRAFT_1194589 [Cochliobolus
heterostrophus C5]
Length = 889
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 214/630 (33%), Positives = 362/630 (57%), Gaps = 37/630 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+++ L K LF ++ T T G RLLR+N+LQPL D E
Sbjct: 215 MMIDVSTIHSLELVQNLRDP-----KSKNCLFGLINETLTPMGARLLRSNILQPLTDPEM 269
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ TR ++++ E+LFF + + L+ F + DR+L KPKK+T ++
Sbjct: 270 LITRYAAVNDMTKKEELFFAVREALKSF-LDADRILTALIVKPKKLT--------LHTTE 320
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+ II+LK ++++ + + L S +L NI R +C E A ++ I VI+ED
Sbjct: 321 QAINQIIMLKQFVNSVNPIYEALTGTASAMLNNI-RELCAPENVAVVQDLIDLVINEDTT 379
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+AR P R Q+ +A+K G++GLLD+AR ++ + +E + + EE + L L +
Sbjct: 380 YARQPLELRNQRTYAVKSGVNGLLDVARTTYKEATEDAFQHSTELSEEYGI-KLDLKYET 438
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ FY+ + +++GK LP F +++ N+I C T+EL RN+ A E
Sbjct: 439 ARQFYIKVALSELEGKALPPVFTNIIRRHNHIECQTVELMK---RNQKARDEA------- 488
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+E L + +R +S+L + E + +LDMI +FAH ++ V+ YT+P T+ LAI+ G
Sbjct: 489 VEDLTEQVRSHMSILFKVCEAVAMLDMI-GAFAHLVT---VNNYTQPQLTDT--LAIEAG 542
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E I F+PN+ + ++ I+TG NMSGKSTY++ + L+ I+AQIGCYVPA+
Sbjct: 543 RHPIKEKIMQTKFVPNDAYATQQTRFHIITGCNMSGKSTYIRSLALMTIMAQIGCYVPAN 602
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ ++ ++F R+GT D +ESN STF EM+E AF+++NV +RSLI++DELGR TS+ D
Sbjct: 603 YASFPILHQLFARIGTDDIIESNVSTFAAEMREIAFILRNVDQRSLIIVDELGRGTSTRD 662
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-NRLDFKFQLK 537
G AIA + E LLS +A FA+H ++L+ + V LH V I++ + + ++
Sbjct: 663 GLAIALAIAEALLSSRALVWFATHFKDLANIMGERAGVLNLHLAVDIQDEHSMTMLYKAT 722
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN--CLQYKQIQMLYHA 595
G HYGL LA V LP ++E A ++ +I + ++ +++ L+ K+ +++ +
Sbjct: 723 QGVAKEVHYGLALARVVPLPPGIVEHATNVARKIERHTIRNKKVSETVLKEKRRKLILNL 782
Query: 596 AQRLICLKYSNQDEESIRHALQNLKESFID 625
+ L+ + E + L +++ F++
Sbjct: 783 KEHLVQAYNGVLEGEVLSAWLSEIQKEFVN 812
>gi|291398670|ref|XP_002715599.1| PREDICTED: mutS homolog 4 [Oryctolagus cuniculus]
Length = 912
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 234/636 (36%), Positives = 375/636 (58%), Gaps = 64/636 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 310 IDSSSAQNLELL--VNNQDY---RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 364
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 365 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 415
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E+++ S+ + L
Sbjct: 416 ITNLIYLKHTLELVDPLKIALKNCNTPLLRAYYGSL-EDKRSLSLNCYMNLF-----LFF 469
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ ++ C +L + SF S+ LA KY LP L+ F++ +
Sbjct: 470 LIITDSKDSNC---------ILYNSYLSFGMISQ----LAEKY----NLP-LRTSFSSAR 511
Query: 243 GFYL-------SIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
GF++ ++P+ +LPS FI++ K N+ ++ +L +N R + + E Y
Sbjct: 512 GFFIQMTVDCTALPND----QLPSEFIKISKVKNSYSFTSTDLIKMNERCQESLREIYHM 567
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
T + + L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LA
Sbjct: 568 TYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LA 621
Query: 356 IDGGRHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I G HPILE I +PNN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG Y
Sbjct: 622 IKQGWHPILEKISLEKPVPNNTYITEGSNFLIITGPNMSGKSTYLKQIALSQIMAQIGSY 681
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA +S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR+T
Sbjct: 682 VPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRST 741
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRNNR 529
++ +G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V RN
Sbjct: 742 NTEEGIGICYAVCEYLLSLKAFTMFATHFLELCHIDVLYPNVENMHFEVQHVKNASRNKE 801
Query: 530 -LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
+ + ++L G +YGL AE + LPS++I AR IT +I ++ ++ KQ
Sbjct: 802 AILYTYRLSKGLTEEKNYGLKAAEASSLPSSIILDAREITRQIARQILQNQRSTPEMEKQ 861
Query: 589 IQMLYHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
+ +YH A RLI ++Q + ES+R L NL++ +
Sbjct: 862 -RAVYHLATRLIQTARNSQLNPESLRTYLLNLRKKY 896
>gi|449295477|gb|EMC91499.1| hypothetical protein BAUCODRAFT_79898 [Baudoinia compniacensis UAMH
10762]
Length = 896
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 216/630 (34%), Positives = 368/630 (58%), Gaps = 28/630 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+++ LH S K LF +L T T G+R LR N+LQPL ET
Sbjct: 239 MMIDLSTIHSLELVQNLHH-----SKSKDCLFGLLNETLTPMGSRFLRTNILQPLTSPET 293
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D L+EL + E++FF + Q L+ F + D++L P + T K D + A
Sbjct: 294 LTGRWDALEELSTKEEMFFNVRQSLKPF-LDVDKMLTQLILIPMQPTLK--DTEQA---- 346
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+++I+LK ++ + + + L A+ LL +I R +C E I++ I I+ED
Sbjct: 347 --INNVIMLKQSVIFIKPVFEALTGARCDLLQHI-RRLCAVENVERIQELIDSTINEDTT 403
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDT-SEAVHNLANKYREELKLPNLKLPFN 239
+A P R Q+ +A+K G++GLLD+AR+++ + S+A+ ++ + REE L L+ F+
Sbjct: 404 YATQPLDLRNQRTYAVKSGVNGLLDVARQTYKEAMSDAIKHITD-LREENSL-TLQTKFD 461
Query: 240 NRQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
+ + FY+ I +++ Q LP+ FI V + + I C TL+L LN + A E + ++
Sbjct: 462 SSRHFYMRIRAEELEQRNLPAVFINVFRKKDLIECQTLDLLKLNQKIADAHAEVLMMSDR 521
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
++ L++ IRE +SVL + E + +LDM+ +SFA ++++ Y RP T NG LAI
Sbjct: 522 SVQQLIEDIREHISVLFKICEGIAMLDML-SSFAQVVTSQD---YVRPTIT-NGTLAIRA 576
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP+ E I FIPN+++ ++ I+TG NMSGKSTY++ V L+ ++AQIG +VPA
Sbjct: 577 GRHPMREKIQQAKFIPNDVYTTQQNRFQIITGCNMSGKSTYIRSVALMTVMAQIGSFVPA 636
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++ ++ ++F R+ T DN+E+N STF EM+ETAF+++N+ S+ V+DELGR T +
Sbjct: 637 QYAAFPIIRQLFARVSTDDNIEANVSTFAAEMRETAFILRNIDRNSMAVIDELGRGTGTR 696
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-VIRNNRLDFKFQL 536
DG AIA + E L+ +A FA+H +++ + V+ LH V +R++ +++
Sbjct: 697 DGLAIALAIAEALVESRALVWFATHFRDIATIMAERNGVQNLHLAVNSSEQDRIEMLYRV 756
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK--KEVKRMEINCLQYKQIQMLYH 594
G HYGL LA V LP+ VIE A + + + ++ KR + L ++ +++ +
Sbjct: 757 SVGTVQEEHYGLKLARVLPLPADVIEHAEHVALALEQQARKKKRSSLAVLNARKRKLILN 816
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKESFI 624
+ L+ +K +E ++ L++L++ F+
Sbjct: 817 LREHLLQVKEGTMSDEDLKQWLKDLQKEFV 846
>gi|330793483|ref|XP_003284813.1| hypothetical protein DICPUDRAFT_148639 [Dictyostelium purpureum]
gi|325085209|gb|EGC38620.1| hypothetical protein DICPUDRAFT_148639 [Dictyostelium purpureum]
Length = 1045
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 216/638 (33%), Positives = 355/638 (55%), Gaps = 40/638 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ IDA +++NLE+I H++ G+ N +L+ + TKT G+RLL + ++QP D+E
Sbjct: 430 IQIDAETIKNLELI---HNSKDGSRN--CTLYEAINKTKTAQGSRLLISAIVQPSNDLEI 484
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + E M+NE+ F L+ L K ++ D++L HF KK ++ K +
Sbjct: 485 IQYRQAAIKEFMANEKTTFILTPILSKI-EDIDKILLHFSQNHKKTST-------VKLIE 536
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
T I + I K +ALP + +L S +L I ++ N+ ++K ++I+E +
Sbjct: 537 TYIKNFIDFKNIFEALPKIVNLLNPMTSPMLKIINNNLI-NKTIEELKKENFKIINEKIP 595
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ ++ + IK G++GLLD+ ++++ D + L Y+++LKLP LKL +
Sbjct: 596 VIKYVASHHSKVVYYIKDGVNGLLDVCKKAYTDILNDIQTLTKFYQDQLKLPLLKLHYCL 655
Query: 241 RQGFYLSIPHKD-IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+G+Y S+P K+ LP+ FI+ + + E+ SL+ R+K E + +
Sbjct: 656 TKGYYYSLPCKNKTLFHLPNPFIRATYRNQKCYFLSEEIISLSRRSKEVFEEIIVLSAQS 715
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+E+L++ R +S L L+E + LLD +++ + + ++ P NGPL I G
Sbjct: 716 IESLIEFYRARISELYNLSESISLLDFLISGSYYALG---LENCVTPEIFVNGPLGIKSG 772
Query: 360 RHPIL------ESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
HPI + DF+PN+ I+E +N ++ GPNMSGKSTY+QQV L+ I+A IG
Sbjct: 773 YHPIQLKKSKKSTNPTDFVPNDTLINETSNFQLIHGPNMSGKSTYIQQVALLTIVAHIGY 832
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+P F+++ ++D+I +R+GT DN+ESN+STFMTEMKE +++++N + SL+++DELGR
Sbjct: 833 LLPCEFASVPLIDQIISRIGTSDNIESNASTFMTEMKEMSYILENATPNSLVIVDELGRG 892
Query: 474 TSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
TS+ DG +IAW+ E L ++ YT+F +H L LA YPN+KI HF V + L +
Sbjct: 893 TSNMDGSSIAWAISEKLSTIGCYTLFVTHYPQLMNLAIFYPNIKIYHFQVSRDSIGLKYN 952
Query: 534 FQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
+ L +G YG+ AE+AG+ S VI+ AR I K+V ++ N K
Sbjct: 953 YLLSEGISSANRSYGIDTAELAGIDSNVIQIARMI------KDV--LDSNTGPEKSTLDY 1004
Query: 593 YHA-------AQRLICLKYSNQDEESIRHALQNLKESF 623
YH Q+L+ LK S Q+E +++ L LK F
Sbjct: 1005 YHPHRDSYTLVQKLLNLKNSKQNETQLKNYLLKLKNDF 1042
>gi|452837394|gb|EME39336.1| hypothetical protein DOTSEDRAFT_83122 [Dothistroma septosporum
NZE10]
Length = 951
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 214/630 (33%), Positives = 366/630 (58%), Gaps = 29/630 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++++LE+++ LH T + L+ +L T T G R+LR+N+LQP D ET
Sbjct: 255 MMIDLSTIKSLELVQNLH-----TPKSRDCLYGLLNETLTPMGMRMLRSNVLQPNTDTET 309
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D ++EL + EQ+FF + L+ F + D+ L P + T V DV Q
Sbjct: 310 LAGRYDAVEELSTKEQMFFSVRTALKPF-LDLDKTLTQLILVPTRQT--VPDV------Q 360
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+++I+LK A+ + L + L +S +L +I +S C E ++++ I I++D
Sbjct: 361 QYINNVIVLKHAISLVEPLRRALTGVRSPMLLSI-QSNCALESTLNVQELIDNTINQDTT 419
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDT-SEAVHNLANKYREELKLPNLKLPFN 239
+AR P R Q+ +A+K G++GLLD+AR+++ ++ ++A+ ++++ EE LP L+ F+
Sbjct: 420 YARAPLDLRNQRTYAVKSGVNGLLDVARQTYKESMTDALQHISD-LAEEHNLP-LQTKFD 477
Query: 240 NRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N + FYL + +++ + LP+ FI V + N I C T+ L LN + A E + ++
Sbjct: 478 NVRQFYLRLRAEELADRNLPAVFINVYRKKNIIECQTMTLVKLNQKIGDAHTEVLLMSDQ 537
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L+ IR+ + L + E L +LDM+ FAH +S V Y RP E LAI
Sbjct: 538 SVRGLIANIRQHMFSLFRICESLAMLDMLAG-FAHLVS---VQNYVRPMIGE--VLAIRA 591
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHPI E IHN FIPN+++ +E ++TG NMSGKSTY++ + L+ I+AQ+G +VPA
Sbjct: 592 GRHPIREKIHNTKFIPNDVYATEQTRFQVITGCNMSGKSTYIRSIALMTIMAQVGSFVPA 651
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++ + ++ ++F R+ D++E+N S+F EM+ETAF+++NV + S++++DELGR TS+
Sbjct: 652 QYAALPIIRQLFARISLDDSIEANVSSFAAEMRETAFILRNVDKSSMVIVDELGRGTSTR 711
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-VIRNNRLDFKFQL 536
DG AIA + E L+ KA F +H +L+ + + V LH V +R+ +++
Sbjct: 712 DGIAIAIAIAEALVESKALVWFVTHFRDLAHIMSERAGVVSLHLAVDTSEQDRMGMLYRV 771
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETAR--SITSRITKKEVKRMEINCLQYKQIQMLYH 594
G HYGL LA V LP VIE A S+T ++ +R I ++ ++ ++L +
Sbjct: 772 AAGTVLEEHYGLKLARVVPLPHDVIEHAELVSLTLEKAMQKKRRTSIGVIKARRRKLLLN 831
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKESFI 624
+ L K ++E+++ L++L++ F+
Sbjct: 832 LKEHLKQAKNGAMNDETLKQWLKDLQKEFV 861
>gi|189193989|ref|XP_001933333.1| DNA mismatch repair protein mutS [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187978897|gb|EDU45523.1| DNA mismatch repair protein mutS [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 889
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 213/630 (33%), Positives = 356/630 (56%), Gaps = 37/630 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+++ L + LF +L T T G RLLR N+LQPL D E
Sbjct: 208 MMIDVSTIYSLELVQNLRDP-----KSRDCLFGLLNETLTPMGARLLRNNVLQPLTDPEM 262
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+NTR +D++ E+LFF L+ F + DR+L P KVT + ++
Sbjct: 263 LNTRYAAVDDMTKKEELFFATRAALKNF-LDADRILTALIVTPNKVT--------LQTTE 313
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+ +I+LK + ++ + + L + +L N+ R +C E A +++ I VI+ED +
Sbjct: 314 QAINQVIMLKQFVHSVNPIFEALTGTSATMLNNV-RELCAPENVAPVQELIDIVINEDTI 372
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+AR P R Q+ +A+K G++GLLD+AR ++ + +E + + + E + L L F N
Sbjct: 373 YARQPLELRNQRIYAVKSGVNGLLDVARTTYKEATEDAYQHSTELSHEYDI-RLDLKFEN 431
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ FY+ I +++ K LP F V++ N I C TLEL RN+ A +
Sbjct: 432 ARQFYIKIATSELEDKVLPPIFTNVIRRKNYIECQTLELMK---RNQKACDQA------- 481
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+E L+D +R +SV+ + E + +LDMI +FA ++ V+ YT+P T+ LAID G
Sbjct: 482 VETLIDGVRSHMSVMFKICEAIAMLDMI-GAFAQLVT---VNNYTQPQLTDT--LAIDAG 535
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E I F+PN+++ ++ I+TG NMSGKSTY++ V L+ I+AQIG YVPA+
Sbjct: 536 RHPIKEKIMQTKFVPNDVYATQQTRFQIITGCNMSGKSTYVRSVALMTIMAQIGSYVPAN 595
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ ++ ++F R+G DN+E+N STF EM++ AF+++NV SL+++DELGR TS+ D
Sbjct: 596 YASFPILHQLFARLGMDDNIETNVSTFSAEMRDIAFILRNVDRHSLVIIDELGRGTSTRD 655
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-NRLDFKFQLK 537
G AIA + E L+S +A FA+H ++L+ + V+ LH V I + + + ++
Sbjct: 656 GLAIALAIAEALVSSRALVWFATHFKDLATIMGERAGVQNLHLAVQIDDEHSMTMLYRAT 715
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN--CLQYKQIQMLYHA 595
G HYGL LA V LP VIE A + ++ + ++R + + L+ K+ +++ +
Sbjct: 716 QGVVREVHYGLTLARVVPLPPGVIEHATRVAQKVERHMLQREKASETILREKRRKLILNL 775
Query: 596 AQRLICLKYSNQDEESIRHALQNLKESFID 625
+ L+ + E + L+ L+ F++
Sbjct: 776 KEHLVQAHNGVLEGEVLTAWLKELQNEFVN 805
>gi|398394321|ref|XP_003850619.1| hypothetical protein MYCGRDRAFT_44908 [Zymoseptoria tritici IPO323]
gi|339470498|gb|EGP85595.1| hypothetical protein MYCGRDRAFT_44908 [Zymoseptoria tritici IPO323]
Length = 923
Score = 346 bits (887), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 202/631 (32%), Positives = 362/631 (57%), Gaps = 28/631 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++R+LE+++ L + K LF L T T G RLLR+N+LQP+ + ET
Sbjct: 230 MMIDLATIRSLELVQNLQNP-----KSKDCLFGQLNETLTPMGARLLRSNILQPVTNPET 284
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+N R + ++EL + E FF + + L+ F + D+ L P ++T V ++S
Sbjct: 285 LNKRYEAVEELSTKEDTFFAVRETLKPF-LDADKTLTQLILSPVQIT-----VTTTEQS- 337
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+++I+LK + + + + L ++S +L+ I R +C E ++ I ++ED
Sbjct: 338 --INNVIMLKQFVALISPVYEALTGSRSDMLSTI-RDICAPENIEPVQSLIAGAVNEDTT 394
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+A+ P R Q+ +A++ G++GLLD+AR+++ ++ ++ +E LP L NN
Sbjct: 395 YAKKPLDLRNQRTYAVRSGVNGLLDVARQTYKESMTDALQHIDEVAQEHSLPLLTKFDNN 454
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
RQ FYL + ++++ + LP FI + N I C TL+L LN + + A E + ++
Sbjct: 455 RQ-FYLHLKAEELEDRNLPEIFINSYRKKNIIECQTLDLVKLNQKIRDAHMEVLLMSDKA 513
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+DA+RE + L + E + +LDM+ +FAH +ST Y RP LAI G
Sbjct: 514 IRDLIDAVREHMPSLFKVCESIAMLDMLA-AFAHAVSTCD---YIRPQLNST-TLAIHSG 568
Query: 360 RHPILESIH--NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHPI E IH F+PN+++ ++ I+TG NMSGKSTY++ V LI I+AQ+G +VPA
Sbjct: 569 RHPIREKIHTTQKFVPNDVYATQQTRFQIITGANMSGKSTYIRSVALITIMAQVGSFVPA 628
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++++ ++ +F R+ DN+E+N S+F EM+ETAF++ N++ S+ ++DELGR TS+
Sbjct: 629 TYASLPIIHHLFARISIDDNIEANVSSFAAEMRETAFILHNITPHSMAIVDELGRGTSTR 688
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI--RNNRLDFKFQ 535
DG AIA + E L++ +A FA+H +L+ + V LH V + ++R++ ++
Sbjct: 689 DGLAIAIAIAEALVASRALVWFATHFRDLASILAERNGVVNLHLAVDMSPEDHRMEMLYR 748
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME--INCLQYKQIQMLY 593
+ G V HYGL LA + LP ++ A +++ + ++ + + E + ++ ++ +++
Sbjct: 749 IASGSEQVSHYGLALARIVPLPEDILPFAENVSRTLEERGLAKQERSMGVVKARRRKLML 808
Query: 594 HAAQRLICLKYSNQDEESIRHALQNLKESFI 624
+ + L+ K S D+++++ L +L+ F+
Sbjct: 809 NLKEHLVQAKESRMDDQALKKWLGDLQGEFV 839
>gi|350586118|ref|XP_003356477.2| PREDICTED: mutS protein homolog 4 [Sus scrofa]
Length = 945
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 221/632 (34%), Positives = 359/632 (56%), Gaps = 62/632 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ S +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 349 IDSSSAQNLELLINNQD-----SRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 403
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 404 MRLDCVQELLQDEELFFGLQSVIARF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 454
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L + A S + ++ + + I +D
Sbjct: 455 ITNLIYLKHTLELVDPLKPWHEAAVSAYIGGAAKAALVQGSWG---QHIWSAMDN----- 506
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P +T + + LA KY LP L+ F++ +
Sbjct: 507 --PRPEKTTLVIMVS---------------PLPRMISQLAEKY----SLP-LRTSFSSAR 544
Query: 243 GFYLSIPHKD---IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + KLPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 545 GFFIQMTTDCTALFNDKLPSEFIKISKVKNSYSFTSTDLIKMNERCQESLREIYHMTYMI 604
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 605 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 658
Query: 360 RHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + NN +I+E +N VI+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 659 WHPILEKISVEKPVANNTYITEGSNFVIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 718
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 719 YSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 778
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ ++F V ++N + +
Sbjct: 779 GIGICYAVCEYLLSLKAFTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRNKEAILY 838
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AE + LP +++ A+ IT++IT +++ + + + + ++ + +
Sbjct: 839 TYKLSKGLTEEKNYGLKAAEASSLPPSIVLDAKEITTQIT-RQILQNQRSTPEMERQRAV 897
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK +
Sbjct: 898 YHLATRLVQTARNSQLDPDSLRTYLSNLKRKY 929
>gi|451848581|gb|EMD61886.1| hypothetical protein COCSADRAFT_201417 [Cochliobolus sativus
ND90Pr]
Length = 889
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 218/631 (34%), Positives = 356/631 (56%), Gaps = 39/631 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+++ L + LF ++ T T GTRLLR+N+LQPL D E
Sbjct: 215 MMIDVSTIHSLELVQNLRD-----PRSRNCLFGLINETLTPMGTRLLRSNILQPLTDPEV 269
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R +DE+ E+LFF + L+ F + DR+L PKK+T ++
Sbjct: 270 LGMRYAAVDEMTKKEELFFAVRAALKNF-LDADRILTALIVTPKKLT--------LHTTE 320
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+ II+LK ++++ + + L S +L NI R +C E A +++ I VI+ED
Sbjct: 321 QAINQIIMLKQFVNSVDPVYEALTGTASVMLNNI-RELCAPENVAVVQELIDLVINEDTT 379
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+AR P R Q+ +A+K G++GLLD+AR ++ + +E + + E + L L +
Sbjct: 380 YARQPLELRNQRTYAVKSGVNGLLDVARTTYKEATEDAFQHSTELSHEYDI-KLDLKYET 438
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ FY+ I +++GK LP F +++ N+I C T+EL RN+ A E
Sbjct: 439 ARQFYIKIALSELEGKALPPVFTNIIRRHNHIECQTVELMK---RNQKACDEA------- 488
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L + +R +S+L + E + +LDMI +FAH ++ V+ YT+P T+ AI+ G
Sbjct: 489 VGNLTEQVRSHMSMLFKVCEAVAMLDMI-GAFAHLVT---VNSYTQPQLTDT--FAIEAG 542
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E I FIPN+ + ++ I+TG NMSGKSTY++ + L+ I+AQIGCYVPA+
Sbjct: 543 RHPIKEKIIQPKFIPNDAYATQQTRFQIITGCNMSGKSTYIRSLALMTIMAQIGCYVPAN 602
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ ++ ++F R+GT D +ESN STF EM+E AF+++NV +RSLI++DELGR TS+ D
Sbjct: 603 YASFPILHQLFARIGTDDIIESNVSTFAAEMREIAFILRNVDQRSLIIVDELGRGTSTRD 662
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-NRLDFKFQLK 537
G AIA + E LLS +A FA+H ++L+ + + V LH V I+ + + ++
Sbjct: 663 GLAIALAIAEALLSSRALVWFATHFKDLATIMSERAGVLNLHLAVDIQGEHSMTMLYKAT 722
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI---TKKEVKRMEINCLQYKQIQMLYH 594
G HYGL LA V LP ++E A + +I T + K EI L+ K+ +++ +
Sbjct: 723 QGVAKEVHYGLALARVVPLPPGIVEHATNAARKIEHHTIRNKKASEI-VLKEKRRKLILN 781
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKESFID 625
+ L+ + E + L L++ F++
Sbjct: 782 LKEHLVQAYNGVLEGEILSAWLSELQKEFVN 812
>gi|406864242|gb|EKD17288.1| DNA mismatch repair protein Msh4 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 898
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 212/624 (33%), Positives = 350/624 (56%), Gaps = 36/624 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRS-LFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M ID +++R+LE+I+ L +A K R+ L+ ++ T T G RLLR+ +LQP +
Sbjct: 235 MMIDLSTIRSLELIQNLQNA------KSRACLYGVMNQTLTPMGARLLRSTILQPSTQVS 288
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
+ R D ++EL + E FF L Q L+ + +++L P + D+ A++S
Sbjct: 289 VLEQRYDAVEELSTKEDTFFQLRQALKSV-MDIEKLLSSLIIMPTQP-----DIMYAEQS 342
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
I+ +++LK+ + ++ + + L A S LL I R C+ E A I EVI+EDV
Sbjct: 343 ---INQVLMLKSFIQSVLPVYESLAGANSDLLVMI-RENCKPEYLAPTMDLIKEVINEDV 398
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ + P R Q+ +A+K G+ GLLD+AR++F +T+E VH + ++ + ++
Sbjct: 399 TYQKTPLDLRNQRTYAVKSGVSGLLDVARQTFKETTEDVHQHVTDINQRYEMV-AETKYD 457
Query: 240 NRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N + +YL + D +G+ +P I + I C TL+L LN R + + E + ++
Sbjct: 458 NARRYYLKLFEHDFEGRDIPDILINRFQKKGCIECQTLDLVKLNQRIEGSHQEVVLMSDQ 517
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTIST-KPVDRYTRPHFTENGPLAID 357
++ L+D IR D+ L + E + +LDMI +FAH +T P+ YTRP + +A+
Sbjct: 518 TVQELIDNIRGDIPTLFRVCESIAVLDMI-TAFAHLATTADPLAEYTRPQIAD--AIAVG 574
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHPI E IH D FI N+I+ SE I+TG NMSGKSTY++ V LI ++AQ+G +VP
Sbjct: 575 SGRHPIKERIHKDKFIANDIYASEQKRFQIITGCNMSGKSTYIRSVALICVMAQVGSFVP 634
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + ++ ++F R+ D++E+N STF +EM+ETAF+++N+ + SL ++DELGR TSS
Sbjct: 635 AAHAVFPLIHQLFARVSMDDSIEANVSTFASEMRETAFILRNIDKNSLAIIDELGRGTSS 694
Query: 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI-RNNRLDFKFQ 535
DG AI+ S E L+ KA FA+H L+++ V +H V + + + + ++
Sbjct: 695 RDGLAISLSIAEALVQSKALVFFATHFRELAQIMQQRLGVVNMHLEVDLSQESTMTMLYK 754
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHA 595
++DG HYG+ LA V LP VIE A + SR + + + + Q + Q L+
Sbjct: 755 VRDGYVQEQHYGIALARVVDLPQQVIEVAERV-SRALEAQAQAKK----QSSKAQALFKR 809
Query: 596 AQRLICLKYSNQDEESIRHALQNL 619
+ + L+ ES++HA +L
Sbjct: 810 RKLVHALR------ESLKHAANSL 827
>gi|324506109|gb|ADY42616.1| MutS protein him-14 [Ascaris suum]
Length = 763
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 200/587 (34%), Positives = 327/587 (55%), Gaps = 42/587 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID ++ NLEI++ + S+ RSL+ +L+ T GG R+LR+NLLQP D+ IN
Sbjct: 138 IDVNTMHNLEIVD---RPGYARSSSNRSLYSLLENCLTGGGVRMLRSNLLQPSADVSVIN 194
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D ++EL+S++ L + E +++ C+ K + ++ + ++
Sbjct: 195 ARCDAVEELLSDQSKLERLRAIISG-AYEIQQLVTLCCYLEK-------EAESVRSAEQK 246
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCEN---EKYASIRKRIGEVIDEDV 179
+S ++ LK L+ + L K L ++S I+R+ EN ++ +RK + E + +
Sbjct: 247 LSQVLNLKDTLNLIGPLRKALDSSKS----TIFRTCYENLNDTRFEGVRKALNERLSSNA 302
Query: 180 -LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEL-KLPNLKLP 237
+ + F R ++C+A++ G + ++D+ARR++ E + + K +EE L + KL
Sbjct: 303 TMVEKSSFGIRNRRCYAVRDGQNNMIDLARRAY---EEMLADAEEKAKEETANLADAKLV 359
Query: 238 FNNRQGFYLSI----PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
+ ++GF+ SI P D+ +LPS FIQVV+H +I C+T EL N R A E
Sbjct: 360 YTAQRGFHYSIRVADPFTDL--RLPSVFIQVVRHCASISCTTRELIKYNDRITVAVNEIM 417
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ + + L+ IR + L + EV+ +D + + + + T V RP F+E
Sbjct: 418 VNSNAVVVGLLSQIRASIGCLYSVVEVISTIDFLASLAIYAMKTSTV----RPSFSEANA 473
Query: 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
L I GRHP+L+ +D + N+ ++S+ + M I+TGPNM+GK+TYL+QVCL+ +LAQ GC
Sbjct: 474 LVIRRGRHPLLDIAVDDVVANDCYLSKESRMAIITGPNMAGKTTYLKQVCLLQVLAQTGC 533
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA F+ +V RIF+R+G DNL SN STF EM E V+ + + SL+V+DEL R+
Sbjct: 534 FVPAEFAAFPIVTRIFSRIGHNDNLTSNLSTFAVEMSEMVPVLASANSSSLVVIDELARS 593
Query: 474 TSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV---VIRN--- 527
TS +G I ++ CE L+ +A+T+FA+H LS +AT Y V+ HF ++R+
Sbjct: 594 TSFEEGIGICYAVCEELIKAEAFTLFATHFLGLSSIATSYAVVENYHFSATSSIVRDENG 653
Query: 528 ---NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
RL +L GP P YG L E+A P V+E AR I +++
Sbjct: 654 AETERLSNTHRLFKGPYRGPLYGFDLVELATFPREVVEEARKIATKL 700
>gi|380483587|emb|CCF40531.1| DNA mismatch repair protein [Colletotrichum higginsianum]
Length = 1042
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 208/641 (32%), Positives = 354/641 (55%), Gaps = 46/641 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQP--LKDI 58
M ID +++ +LEI++ L + S K SLF +LK T+T G+R+LR+NLLQP LKD
Sbjct: 108 MMIDVSAIISLEILQNLRA-----SKSKDSLFGILKHTRTPMGSRVLRSNLLQPSTLKD- 161
Query: 59 ETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
+ R D LDEL+SN ++F G+ + L+ P + + VL P K + +
Sbjct: 162 SYLEPRYDALDELLSNHEMFLGVREALKSIP-DIESVLTQLVIIPNK--------PSVEA 212
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
S+ I+ ++++KT LDA+P L + L+ A S LL I R +C +++ I + I ED
Sbjct: 213 SERAINHVLMVKTFLDAVPFLYQTLEPATSPLLIKI-RDLCRPGLTETVKNLIYQDIIED 271
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
V + + R Q+ FA+K G++GLLD+AR+++ + + VH+ + +E + L +
Sbjct: 272 VTYVKSALDLRNQRTFAVKSGVNGLLDVARQAYKENTNDVHSHVEELSKEYGI-EADLRY 330
Query: 239 NNRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+ + +++ + D + + +P + + G +I C T+ L LN R + E + ++
Sbjct: 331 DTSRKYWIRLRAVDFEDRQIPPVLVNQTRKGPHIECLTMRLKKLNQRITDSVAEVVMLSD 390
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
++ L+D++R + L + + + LLDMI SFAH S + + RP +E LA+
Sbjct: 391 KVIQDLIDSVRTQLQPLYRVCDSIALLDMIA-SFAHASS---IHDWKRPEISET--LALK 444
Query: 358 GGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
RHPIL+ S + F+PN+ + +E +VTG NMSGK+TY++ + L+ I+AQ+GC+VP
Sbjct: 445 SARHPILDKSSRSPFVPNDYYATEEYRFHVVTGCNMSGKTTYIRSIALLQIMAQVGCFVP 504
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
F++ VV IF R+ T D++E+N STF EM+E AF++ NV++RS++++DELGR TS+
Sbjct: 505 VEFASFPVVHNIFARVTTDDHIETNMSTFSLEMREMAFILSNVTDRSIVIIDELGRGTST 564
Query: 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN-----RLD 531
DG AI+ + E L+ ++ FA+H L+++ P V LH + ++
Sbjct: 565 RDGLAISIAMAEALIQSRSLVWFATHFTELADILADRPEVLNLHLVTQVSTTADDVPKMT 624
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK--------EVKRMEINC 583
++++ G YG+ LA+ G P +E A + + +K E ++M
Sbjct: 625 MLYKVESGKNKELLYGISLAKAMGFPKRFLEVAEQVAVSLRQKRERNKQGSEARKM---- 680
Query: 584 LQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFI 624
L +++ + H R S DE+S+R L L+E FI
Sbjct: 681 LNRRKLILNLHGQLRQAS--DSELDEDSLRSYLIRLREEFI 719
>gi|320031359|gb|EFW13329.1| DNA mismatch repair protein Msh4 [Coccidioides posadasii str.
Silveira]
Length = 869
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 195/582 (33%), Positives = 340/582 (58%), Gaps = 26/582 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ L A K LF +L T T G RLLR+N+LQP +
Sbjct: 200 MMIDLSTIISLELIQNLQRA-----KSKDCLFGVLNETLTPMGARLLRSNVLQPSTEPTK 254
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D ++EL + E +F G+ + L+ F ++D++L P ++T ++A++S
Sbjct: 255 LLGRYDAVEELATREDMFHGVREALKSF-VDSDKILTALTLVPTRIT-----FEHAEQS- 307
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+++I+LKT + ++ + + L ++S LL I R++C+ +Y I + ++ DV
Sbjct: 308 --INNMIMLKTYVSSIKPVYESLTGSKSDLLVAI-RNLCDPSQYEVIESLLDSTLNADVS 364
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ +A+K G++ LLD+AR+++ + + V+ LA+ E L +L L F
Sbjct: 365 YQSRPLDLRNQRTYAVKAGVNSLLDVARQTYKEANTDVNELASHLTEAHNL-SLDLRFET 423
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ +Y +P D++ K LP FI V + + + TL+L LN + + E ++
Sbjct: 424 ARQYYFRLPVSDLEEKQLPGVFINVFRKRSYLEFQTLDLVKLNQKITDSHNEVIAMSDKS 483
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ L++ +R ++SVL ++E L +LDM+ ++FA + V Y RP T+ LAI G
Sbjct: 484 VQELIEDVRSEISVLFRISEGLAMLDML-STFARLVV---VHDYVRPELTDT--LAIKAG 537
Query: 360 RHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E IH N FIPN+ + ++ + IVTG NMSGKSTY++ + L+ ++AQIGC+VPA
Sbjct: 538 RHPIREKIHSNKFIPNDAYATQQSRFQIVTGCNMSGKSTYIRSIALMSVMAQIGCFVPAQ 597
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ +V ++F R+ DN E+N STF EM+E AF+++N+ RS+ ++DELGR TS+ D
Sbjct: 598 YASFPIVTQLFARISADDNTEANISTFSAEMREMAFILRNIGPRSMAIVDELGRGTSTVD 657
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQL 536
G +IA + E L+ A FA+H +L+ + V LH V + +++ +++
Sbjct: 658 GLSIAIAISEALVDSHALVWFATHFTDLARIMAHRNGVINLHLAVEMSAPTSKMTMLYKI 717
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
DG HYGL LA++ P+ +++TA++++ ++ + KR
Sbjct: 718 ADGYVKEKHYGLSLAKLMPFPAKILQTAQTVSEELSLRATKR 759
>gi|169601676|ref|XP_001794260.1| hypothetical protein SNOG_03709 [Phaeosphaeria nodorum SN15]
gi|160705990|gb|EAT88914.2| hypothetical protein SNOG_03709 [Phaeosphaeria nodorum SN15]
Length = 687
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 212/641 (33%), Positives = 351/641 (54%), Gaps = 64/641 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+++ L + S K L+ +L T T G RLLR N+LQPL D +
Sbjct: 19 MMIDVSTIHSLELVQNLQN-----SKSKDCLYGLLNETLTPMGARLLRNNVLQPLTDADV 73
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHF-----------CFKPKKVTSK 109
+ TR +D+L + E++FFG L+ F + DR+L F VT
Sbjct: 74 LTTRYAAVDDLTTKEEMFFGTRAALKNF-LDADRILTQVRAALPEGFPIHSFMQLIVTPS 132
Query: 110 VLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRK 169
+ ++S I+ II+LK + ++ + + L S +L NI R +C E A I++
Sbjct: 133 KPTLQTTEQS---INHIIMLKYFVGSVKPIYEALTGTGSSMLNNI-RELCAPENIAPIQE 188
Query: 170 RIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEL 229
I VI+ED +A+ P R Q+ +A+K G++GLLD+AR ++ + SE + ++ +E
Sbjct: 189 LIDLVINEDTTYAKQPLELRNQRVYAVKSGVNGLLDVARTTYKEASEDAYQHCSELGQEY 248
Query: 230 KLPNLKLPFNNRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSA 288
L+L + + + FY+ IP I+G+ LP F V++ NI CSTLEL RN+ A
Sbjct: 249 DF-QLELKYESARQFYIRIPASQIEGRDLPPIFTNVIRRKKNIECSTLELMK---RNQKA 304
Query: 289 AGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
+E L++ +R +S++ + E + LLDM ++
Sbjct: 305 -----------VENLIEEVRSHMSIMFKICEAVALLDMFTDT------------------ 335
Query: 349 TENGPLAIDGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
LAI GRHPI E I F+PN+++ ++ I+TG NMSGKSTY++ V L+VI
Sbjct: 336 -----LAIQQGRHPIKEKIMQTKFVPNDVYSTQQTRFQIITGCNMSGKSTYIRSVALMVI 390
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQIGCYVPA +++ ++ ++F R+G DN+E+N STF EMKE AF+++N+ RSL ++
Sbjct: 391 MAQIGCYVPATYASFPILHQLFARLGMDDNIETNVSTFAAEMKEIAFILRNIDRRSLAIV 450
Query: 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
DELGR TS+ DG AIA + E L+S KA FA+H ++L+ + V+ LH V ++N
Sbjct: 451 DELGRGTSTRDGLAIALAIAEALVSSKALVWFATHFKDLATIMAERAGVQNLHLAVELKN 510
Query: 528 NR-LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN--CL 584
+ + +++ G HYGL LA + LP +++ A + +I +KR + + L
Sbjct: 511 DESMTMLYRITPGAVKEAHYGLTLARIVPLPPGLVDHAAQVAQKIEAHMLKRKKASETVL 570
Query: 585 QYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFID 625
+ K+ +++ + + LI + + E + L+ L++ F++
Sbjct: 571 REKRRKLILNLREHLIQAQNGELEGEVLTAWLKELQKEFVN 611
>gi|255950710|ref|XP_002566122.1| Pc22g22270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593139|emb|CAP99515.1| Pc22g22270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 841
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 204/630 (32%), Positives = 348/630 (55%), Gaps = 30/630 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ +LE+I+ L +A K SLF +L T T G RLLRA++LQP +
Sbjct: 157 MTIDLATIVSLELIQNLQNA-----KSKESLFGLLNETLTPMGARLLRASILQPSTERVK 211
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R + +++L + E +F + Q L+ F + D+VL P K T + ++
Sbjct: 212 LTARYNAVEDLATKEDMFVSVRQALKGF-IDADKVLTAIILVPTKRTIQYVEQS------ 264
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++++I+LKT + A+ + + L AQS LL I R +C E + S+ + I ++E V
Sbjct: 265 --VNNVIMLKTYVSAIKNIFQALGAAQSDLLLTI-RELCAPEGHRSVEELIDATLNEHVA 321
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ + +K G++ LLD+AR+++ + + L K + L L ++
Sbjct: 322 YQSKPLDLRNQRIYCVKAGVNSLLDVARQTYKEANADAMELIEKLSGSCDMV-LDLKYDT 380
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
+ +Y+ IP + G LP FI V + N I C TL+L LN + A E ++ +
Sbjct: 381 ARQYYICIPATE-SGPLPDIFINVYRKRNRIECQTLDLVKLNQKITDAHSEVINMSDQTI 439
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L+ + +VS L ++E + +LDM+ +FA + + Y RP T+ LAI GR
Sbjct: 440 QDLLRDVCTEVSGLFRVSEAIAMLDMLA-AFAQLATN---NEYIRPELTDT--LAIKAGR 493
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HPI E IH+ FIPN+ + + I+TG NMSGKSTY++ + LI ++AQIGC+VPA +
Sbjct: 494 HPIREQIHSSKFIPNDAYATPQTRFQIITGCNMSGKSTYIRSLALITVIAQIGCFVPAQY 553
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
++ + ++F R+ T D+L++N STF EM+E AF+++N+ RS++++DELGR TS++DG
Sbjct: 554 ASFPISHQLFARVATSDDLDANVSTFAAEMREMAFILRNIQPRSMVIIDELGRGTSTTDG 613
Query: 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN--RLDFKFQLK 537
AIA + E L+S A F +H +L+++ V LH I + ++ ++++
Sbjct: 614 LAIAVALAEALISSNALVWFVTHFHDLAQILAERSGVINLHLAADIAPDASKMTMQYRIA 673
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSIT---SRITKKEVKRMEINCLQYKQIQMLYH 594
+GP YGL+LAE+A LP V+ ARS++ ++ K+ + K+ ++L
Sbjct: 674 EGPVPDRRYGLILAELADLPPAVLNKARSVSEAMDQLAKRRNSPSRAVAIAQKR-KLLLS 732
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKESFI 624
++L ++ D S+R L L++ F+
Sbjct: 733 LREQLFLVRDGTMDNASLRALLIKLQDDFV 762
>gi|66810205|ref|XP_638826.1| hypothetical protein DDB_G0283957 [Dictyostelium discoideum AX4]
gi|60467443|gb|EAL65466.1| hypothetical protein DDB_G0283957 [Dictyostelium discoideum AX4]
Length = 1041
Score = 331 bits (848), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 206/637 (32%), Positives = 346/637 (54%), Gaps = 67/637 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M IDA +++NLE+I HS+ G+ N +L+ + T T G+RLL + ++QP D ET
Sbjct: 396 MQIDAETIKNLELI---HSSKDGSRN--CTLYQSINNTSTSQGSRLLISAIVQPSNDFET 450
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + + +L+SN+++ F L+ L K ++ D+ L F + K+VT K + +
Sbjct: 451 IKHRQNAIKQLLSNQRVVFTLTPLLSKI-QDIDKTLLLFSQQNKQVTIKSI--------E 501
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE-----VI 175
T I I K + LP ++ +L ++C+N I+ ++ +I
Sbjct: 502 TSIKCFIDFKNIFELLPKISNLLNSG----------TICDNPMLNLIKGKLNNETNNILI 551
Query: 176 DED--VLHARVPFVARTQQ-----------------------CFAIKGGIDGLLDIARRS 210
E VL+ + F Q IK G++GLLD+ +++
Sbjct: 552 KESSKVLNVNLNFQLSKQDQQHQQKEQQQQQQQQVNKINYKIIMYIKDGVNGLLDVCKKT 611
Query: 211 FCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQ-GKLPSTFIQVVKHGN 269
+ + ++ ++ L Y+E+ KLP LKL +G+Y S+P K+ LP+ F++
Sbjct: 612 YKEITDDINKLTKYYKEQFKLPQLKLQHCQTKGYYYSLPCKNKALFHLPNVFVRSSYRNQ 671
Query: 270 NIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVN 329
+ + EL SL+ R++ E I + +E L++ R +S L ++E + LLD +V+
Sbjct: 672 KYYLFSEELTSLSRRSREVFEEIIILSAQSIEKLIEFYRSHISELYNISESISLLDFLVS 731
Query: 330 SFAHTISTKPVDRYTRPH-FTENGPLAIDGGRHPI-------LESIHNDFIPNNIFISEA 381
+++ +D+ P F GPLAI G HP+ ES F+PN+ I+E
Sbjct: 732 GALYSLQ---LDQSVCPEIFNGKGPLAIKSGYHPLQLKKSKKKESFSTCFVPNDTLINET 788
Query: 382 ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESN 441
A+ ++ G NMSGKSTY+QQV L+ I+A IG ++PA F+T+ +VD+I +R+GT DN++SN
Sbjct: 789 ASFQLIHGCNMSGKSTYIQQVALLTIVAHIGYFLPAEFATVPIVDQIISRLGTSDNIQSN 848
Query: 442 SSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFAS 501
+STFMTEMKE +++++N +E SL+++DELGR TS+ DG +IAWS EHL + YT+F +
Sbjct: 849 ASTFMTEMKEISYILENTTESSLVIIDELGRGTSNMDGSSIAWSISEHLSMIGCYTLFVT 908
Query: 502 HMENLSELATIYPNVKILHFYVVIRNNR-LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTV 560
H + L LAT YPN+++ HF V ++ L + + +G + YG+ AE+AG+ S V
Sbjct: 909 HYQQLLNLATFYPNIRVYHFQVSKDDSSGLKYNYLFSEGVSSIDSYGVETAELAGIDSKV 968
Query: 561 IETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQ 597
I++A++I + + K + I +H ++
Sbjct: 969 IQSAKTIRNLLESKSNNNQINPNTNNQSINQYHHPSR 1005
>gi|327295969|ref|XP_003232679.1| DNA mismatch repair protein Msh4 [Trichophyton rubrum CBS 118892]
gi|326464990|gb|EGD90443.1| DNA mismatch repair protein Msh4 [Trichophyton rubrum CBS 118892]
Length = 909
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 207/631 (32%), Positives = 347/631 (54%), Gaps = 32/631 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ L +A K LF +L T T G RLLR+N+LQP +I
Sbjct: 209 MMIDLSTIVSLELIQNLQNA-----KSKDCLFGILNETLTPMGARLLRSNILQPSTEIAK 263
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+NTR D ++EL SNE +FF + Q L+ F ++DRVL P K + A++S
Sbjct: 264 LNTRYDAVEELSSNEGMFFAVRQALKSF-VDSDRVLTALTVIPTKPSFLF-----AEQS- 316
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+++I+LKT + + + + L A+S LL I R Y ++ + E +++D+
Sbjct: 317 --INNVIMLKTFVSCIRPIHEALAGAKSSLLETI-RDASSPRNYEPVQTILKETLNDDIR 373
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ R + +A+K G++ LLD+AR+++ + ++ V L + EE +P L L F
Sbjct: 374 YQTSALDLRNHRTYAVKAGVNNLLDVARQTYKEANDDVSELCARLTEEYDIP-LDLRFET 432
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ +Y + D+QG LP+ FI V + + TL+L +N + + E ++
Sbjct: 433 GRHYYFRVKSTDLQGVVLPNIFINVYRKKAYVEFQTLDLVKMNQKITDSHNEVVSMSDRS 492
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN-SFAHTISTKPVDRYTRPHFTENGPLAIDG 358
++ L+D R +S L ++E + LLDMI ++ HT+ Y RP T+ LAI
Sbjct: 493 IQELIDDARSQISSLFRISEAVALLDMIAAFAYLHTLQD-----YVRPEITDT--LAIKA 545
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHPI E IH+ +IPN+++ S + I+TG NMSGKSTY++ + L+ ++AQIG VPA
Sbjct: 546 GRHPIREKIHSTKYIPNDVYASSQSRFQIITGCNMSGKSTYIRSLALMAVMAQIGSSVPA 605
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+++ +V ++F R+ T DN +N STF TEM+E AF+++NV +S++++DELGR T+S+
Sbjct: 606 QYASFPIVHQLFARVSTDDNQATNVSTFSTEMREMAFILRNVDSKSMVIIDELGRGTAST 665
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR--LDFKFQ 535
DG AI+ + E L+ A F +H +L + V LH V + + R + ++
Sbjct: 666 DGLAISIAIAEALVETHALVWFTTHFHDLPRIMEHRSGVINLHLAVDMSDPRSKITMLYK 725
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI---TKKEVKRMEINCLQYKQIQML 592
+ DG HYGL LA + LP +IE A +++ + + K I L K+ ++L
Sbjct: 726 IVDGYVQEQHYGLALARIFSLPPYLIEVAEEVSNHLALAAQDRAKSPAIISLA-KRRRLL 784
Query: 593 YHAAQRLICLKYSNQDEESIRHALQNLKESF 623
++L+ +++++R L L+ F
Sbjct: 785 LTLGEQLMHAHEGTMEDDALREWLLRLQREF 815
>gi|223995217|ref|XP_002287292.1| DNA mismatch repair mutS protein [Thalassiosira pseudonana
CCMP1335]
gi|220976408|gb|EED94735.1| DNA mismatch repair mutS protein [Thalassiosira pseudonana
CCMP1335]
Length = 634
Score = 330 bits (846), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 199/589 (33%), Positives = 322/589 (54%), Gaps = 39/589 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNID +++ NLE++ T SL + TKT G RLLR NL+ P ++T
Sbjct: 70 MNIDRSTMVNLELMINAK-----TGRNAHSLVGTIDCTKTSVGGRLLRTNLMAPPTRLDT 124
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RLD +D L+ +E+ F+ + + L P + D++L + P+K V A+ +
Sbjct: 125 IHARLDLVDSLLEDEEFFYVVMEHLEDLP-DVDKMLAYVALAPRKKRQTV----TARIAS 179
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
IS+++ +K+ L +P A VL+ + LL I + + A + + + E
Sbjct: 180 RGISALVCIKSILSLIPSFAHVLEQTRHQLLRAILIAT-KQPALARVLDAVTNIFTESTT 238
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + R Q+CFA+K DG++D+ R++F + ++ LA++Y E + + +
Sbjct: 239 YNKNSHAMRHQECFALKPNTDGMMDVLRKAFLANVDDIYRLADEYAEAYDI-TVSVKETT 297
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
+G+YLS+ D+ LP FIQ VK+G IHC+T E+ SLN R + + + T +
Sbjct: 298 ARGYYLSVS-ADLGLDLPQIFIQPVKNGRFIHCTTEEVYSLNCRAQENVQDLLLMTHARI 356
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTIST------KPV--DRYTRPHFTENG 352
+ +++ R+ L L++ + LLDM + FA +++ +PV DR P+ E+
Sbjct: 357 QEVLEVARDHYDCLASLSDAIALLDM-CHCFADNVASSRMPWCRPVLSDREKHPNNQEDA 415
Query: 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
+ G NDF+PN+ + S N ++TG N SGKSTYL+Q+ LIVILA G
Sbjct: 416 SSSAGG----------NDFVPNDTYSSALQNFTVITGINGSGKSTYLKQIALIVILAHCG 465
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
CYVPA + + + D+I TR+GT D+ E N STF+ EMKETAF+ + +E+SL ++DELGR
Sbjct: 466 CYVPAEEALVPIRDQICTRIGTTDDQEHNISTFLLEMKETAFICNSTTEKSLFLLDELGR 525
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR------ 526
ATS+ DG A+AW+ E+LL+ +A T F +H +S+LA +YPNV+ H I
Sbjct: 526 ATSNEDGVAVAWAVSEYLLTKRAMTFFVTHYPQISKLAEVYPNVQNQHLGSHISPVYNED 585
Query: 527 NNRLDFKFQLKDGP-RHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
+ +++ ++ GP + YGL +A G P +E AR I + +K
Sbjct: 586 GSNINYTHKILPGPCKAAGDYGLEMAATCGWPEDNLENARKIRLEVQQK 634
>gi|453081871|gb|EMF09919.1| DNA mismatch repair protein Msh4 [Mycosphaerella populorum SO2202]
Length = 935
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 204/629 (32%), Positives = 364/629 (57%), Gaps = 30/629 (4%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID +++++LE+++ L + K LF +L T T GTRLL++N+LQP+ + +T+N
Sbjct: 248 IDLSTIKSLELVQNLCNP-----KSKDCLFGLLGETLTPMGTRLLKSNILQPITNPDTLN 302
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D ++EL + E +FF + L+ F + DR+L P T ++
Sbjct: 303 KRYDAVEELSTKEDMFFSVRAALKPF-LDADRILTQLIIIPVHPT--------MHTTEQG 353
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I++II+LK + + + + L + +L I R + E ++ I I+ED ++A
Sbjct: 354 INNIIMLKQFVTHIKPMWEALAGCRCEMLTEIQR-ISAPENLETVIDLISSTINEDTMYA 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDT-SEAVHNLANKYREELKLPNLKLPFNNR 241
+ P R + +A+K G++GLLD+AR+++ ++ ++A+ ++ + +E KLP L+ ++N
Sbjct: 413 KQPLDLRNSRTYAVKSGVNGLLDVARQTYKESMTDALQHIDDTCKEH-KLP-LQTKYSND 470
Query: 242 QGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
+GFYL + ++++ + +P F+ V + + I C T+EL N + A E + ++ +
Sbjct: 471 RGFYLRLRVEELEDRNMPPVFVNVYRRKDIIECQTMELIKRNQKISDAHTEVLLMSDESI 530
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L D IRE +S L + E + +LDM+ + AH S++ Y+RP ++ LAI GR
Sbjct: 531 KVLTDNIREHMSGLFKVCECVAMLDMLA-ALAHVASSQD---YSRPALSKT--LAIRAGR 584
Query: 361 HPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HPI E IHN +IPN+++ ++ I+TG NMSGKSTY++ V L+ I+AQIG +VPA +
Sbjct: 585 HPIREKIHNTKYIPNDVYATQQTRFQIITGCNMSGKSTYIRSVALMTIMAQIGSFVPAQY 644
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ ++ ++F R+ D++E+N STF EM+E AF+++N++ S++++DELGR TS+ DG
Sbjct: 645 AAFPIIQQLFARVSMDDSIEANVSTFAAEMREAAFILKNINRHSMVIVDELGRGTSTRDG 704
Query: 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
IA + E L+ +A FA+H +LS + V LH V I ++R++ +++ G
Sbjct: 705 IGIAIAIAEALVQSRALVWFATHFRDLSTILAERNGVVNLHLSVKISHSRMEMLYKIASG 764
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME---INCLQYKQIQMLYHAA 596
HYGL LA++ LPS VIE A + S I + +VKR + + + ++ ++L +
Sbjct: 765 TVTEEHYGLTLAKILPLPSDVIEHAERV-SHILEAQVKRRKEHSLGVVHARRRKLLLNLV 823
Query: 597 QRLICLKYSNQDEESIRHALQNLKESFID 625
+ L + EE+++ L +L+ FI+
Sbjct: 824 EHLNQARDGTMSEENLKKWLVDLQIEFIN 852
>gi|392869158|gb|EAS27642.2| DNA mismatch repair protein Msh4 [Coccidioides immitis RS]
Length = 869
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 193/582 (33%), Positives = 337/582 (57%), Gaps = 26/582 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ L A K LF +L T T G RLLR N+LQP +
Sbjct: 200 MMIDLSTIISLELIQNLQRA-----KSKDCLFGILNETLTPMGARLLRINVLQPSTEPTK 254
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D ++EL + E +F + + L+ F ++D++L P ++T ++A++S
Sbjct: 255 LLGRYDAVEELATREDMFHAVREALKSF-VDSDKILTALTLVPTRIT-----FEHAEQS- 307
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+++I+L+T + ++ + + L ++S LL I R++C+ +Y I + ++ DV
Sbjct: 308 --INNMIMLRTYVSSIKPIYESLTGSKSDLLVAI-RNLCDPSQYEVIESLLDSTLNADVS 364
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ +A+K G++ LLD+AR+++ + + V+ LA+ E L +L L F
Sbjct: 365 YQSRPLDLRNQRTYAVKAGVNSLLDVARQTYKEANTDVNELASHLTEAHNL-SLDLRFET 423
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ +Y +P D++ K LP FI V + + + TL+L LN + + E ++
Sbjct: 424 ARQYYFRLPVSDLEEKQLPGVFINVFRKRSYLEFQTLDLVKLNQKITDSHNEVITMSDKS 483
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ L++ +R ++SVL ++E L +LDM+ ++FA + V Y RP T+ LAI G
Sbjct: 484 VQELIEDVRSEISVLFRISEGLAMLDML-STFAQLVV---VHDYVRPELTDT--LAIKAG 537
Query: 360 RHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E IH N FIPN+ + ++ + IVTG NMSGKSTY++ + L+ ++AQIGC+VPA
Sbjct: 538 RHPIREKIHSNKFIPNDAYATQQSRFQIVTGCNMSGKSTYIRSIALMSVMAQIGCFVPAQ 597
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ +V ++F R+ DN E+N STF EM+E AF+++N+ RS+ ++DELGR TS+ D
Sbjct: 598 YASFPIVTQLFARISADDNTEANISTFSAEMREMAFILRNIGPRSMAIVDELGRGTSTVD 657
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQL 536
G +IA + E L+ A FA+H +L+ + V LH V + +++ +++
Sbjct: 658 GLSIAIAISEALVDSHALVWFATHFTDLARIMAHRNGVVNLHLAVEMSAPTSKMTMLYKI 717
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
DG HYGL LA++ P +++TA++++ ++ + KR
Sbjct: 718 ADGYVKEKHYGLSLAKLMPFPPKILQTAQTVSEELSLRAAKR 759
>gi|402855000|ref|XP_003892137.1| PREDICTED: mutS protein homolog 4-like [Papio anubis]
Length = 589
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 189/525 (36%), Positives = 326/525 (62%), Gaps = 28/525 (5%)
Query: 114 DNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE 173
D +++ I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I
Sbjct: 61 DTVNAAESKITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKT 119
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
VI++D + + RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP
Sbjct: 120 VINDDARYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP- 178
Query: 234 LKLPFNNRQGFY-------LSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNK 286
L+ F++ +GF+ L++P+ +LPS FI++ K N+ ++ +L +N R +
Sbjct: 179 LRTSFSSARGFFIQMTTDCLALPN----DQLPSEFIKISKVKNSYSFTSADLIKMNERCQ 234
Query: 287 SAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
+ E Y T + + L+ I E + L L++ + +LDM++ SFAH + + Y RP
Sbjct: 235 ESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRP 290
Query: 347 HFTENGPLAIDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405
FT+ LAI G HPILE I + I NN +I+E +N +I+TGPNMSGKSTYL+Q+ L
Sbjct: 291 EFTDT--LAIKQGWHPILEKISAEKPIANNTYITEGSNFLIITGPNMSGKSTYLKQIALC 348
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
I+AQIG YVPA +S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI
Sbjct: 349 QIMAQIGSYVPAEYSSFRIAKQIFTRLSTDDDIETNSSTFMKEMKEIAYILHNANDKSLI 408
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV- 524
++DELGR T++ +G I ++ CE+LLSLKA+T+FA+H L + +Y NV+ +HF V
Sbjct: 409 LIDELGRGTNTEEGIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYLNVENMHFEVQH 468
Query: 525 IRNNRLD-----FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRM 579
++N + + ++L G +YGL AEV+ LP +++ A+ IT++IT +++ +
Sbjct: 469 VKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQN 527
Query: 580 EINCLQYKQIQMLYHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
+ + + ++ + +YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 528 QRSTPEMERQRAVYHLATRLVQTARNSQLDPDSLRIYLSNLKKKY 572
>gi|452980539|gb|EME80300.1| hypothetical protein MYCFIDRAFT_189891 [Pseudocercospora fijiensis
CIRAD86]
Length = 895
Score = 328 bits (842), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 205/636 (32%), Positives = 358/636 (56%), Gaps = 32/636 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++R LE+++ L + K LF +L T T G RLLR+N+LQP+ + +T
Sbjct: 231 MMIDLSTIRALELVQNLQNP-----KSKDCLFGLLNETLTPMGVRLLRSNVLQPVTNQDT 285
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+N R D ++EL + E +FF + L+ F + D++L P + N ++S
Sbjct: 286 LNKRYDAVEELSTKEDMFFNVRSALKPF-LDIDKILTQLILVPANPAHGL----NTEQS- 339
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+++I+LK + + + + L ++S +L I R +C E ++ I I+ED
Sbjct: 340 --INNVIMLKHFVTLIRPVFESLTGSRSEMLQEIQR-LCSPENVDNVLDLINSTINEDTT 396
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDT-SEAVHNLANKYREELKLPNLKLPFN 239
A P R Q+ +A+K GI+GLLD+AR+++ + ++A+ ++A+ EE KLP + N
Sbjct: 397 FAHQPLDLRNQRIYAVKSGINGLLDVARQTYKEAMTDAMQHIAD-MGEEHKLPFITKYEN 455
Query: 240 NRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
RQ FYL + ++ + LP+ FI V + + I C TL+L N + A E ++
Sbjct: 456 GRQ-FYLRLRVDELADRTLPAVFINVYRRKDMIECQTLDLVKRNQKIVDAHIEVLNMSDK 514
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L+ +RE +S + + E + +LDM+ SFAH ++ + Y RP + LAI
Sbjct: 515 SVRELIVNLREHMSGMFKICECVAMLDMLA-SFAHIVA---LQDYVRPVMS--ATLAIRA 568
Query: 359 GRHPILESIHND----FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHPI E++ + +IPN+++ ++ I+TG NMSGKSTY++ + L+ I+AQIG +
Sbjct: 569 GRHPIKENLQRNNNTKYIPNDVYATQQTRFQIITGCNMSGKSTYIRSIALMTIMAQIGSF 628
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++ ++ +IF R+ N+E+N STF +EM+ETAF++ N+ S+ ++DELGR T
Sbjct: 629 VPAQYAAFPIIRQIFARVSIDSNIEANVSTFASEMRETAFILHNLDPSSMAIIDELGRGT 688
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
S+ DG +IA + E L+S +A FA+H +L+++ + V LH V I + ++ +
Sbjct: 689 STRDGLSIAIAIAEALVSSRALVWFATHFRDLAQILSERSGVVNLHLSVDISDASMNMLY 748
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME----INCLQYKQIQ 590
+ G HYGL ++++ LP V+E A +++ + + R ++ L+ ++ +
Sbjct: 749 TIASGAEKEEHYGLKISKLVPLPRDVVEVAERVSTALERIGKSRKAGGNFVSVLKARRRK 808
Query: 591 MLYHAAQRLICLKYSNQDEESIRHALQNLKESFIDG 626
+L + + LI K EE++R LQ+L+ F+ G
Sbjct: 809 LLLNLKEHLIQAKEGVMSEENLRVWLQDLQREFVVG 844
>gi|440632215|gb|ELR02134.1| hypothetical protein GMDG_05293 [Geomyces destructans 20631-21]
Length = 763
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 189/577 (32%), Positives = 332/577 (57%), Gaps = 31/577 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++R+LE+I+ + + K LF +L T T G+R+LR+N+LQP
Sbjct: 88 MMIDLSTIRSLELIQNITNV-----KSKDCLFGLLNETLTPMGSRMLRSNILQPSTQESI 142
Query: 61 INTRLDCLDELMSNEQLFFG------LSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD 114
+ R + EL S E+ FF + L+ F + D++L + +P + D+
Sbjct: 143 LKNRYKAVGELASTEETFFDTRNGKHIMDSLKPF-LDIDKLLTNLIIQPTQP-----DIQ 196
Query: 115 NAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
++++S I+ I++LKT + + + + L A+S LL +I R+VC K IGEV
Sbjct: 197 HSEQS---INHILMLKTFVQCVGPVYEALSGARSPLLVDI-RNVCRPNNITPTLKIIGEV 252
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
I++DV R P R Q+ +A+K G++GLLD+AR++F + ++ VH + ++ ++ +
Sbjct: 253 INDDVTFQRSPLDLRNQRTYAVKSGVNGLLDVARQTFKEATQDVHQHVSDINDQYEM-QM 311
Query: 235 KLPFNNRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
+ ++N + +YL I +++G+ +P I + I C TL L LN R + + E
Sbjct: 312 ETRYDNARRYYLRIQESNLEGRTMPDILINCYRKKGYIECQTLGLVKLNQRIEDSHQEVV 371
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ ++ + L+D +R ++ L +++ + +LDM+ +FA ++T Y +P T
Sbjct: 372 LMSDKTVTQLIDNVRAEIQPLFRVSDSIAMLDMLA-AFAQLVTTSD---YVKPEITR--C 425
Query: 354 LAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
LAI GRHP+ E H++ FIPN+++ + I+TG NMSGKSTY++ + L+ ++AQIG
Sbjct: 426 LAIKSGRHPVHEKAHSEKFIPNDVYADKQQRFQIITGCNMSGKSTYIRSIALVTVMAQIG 485
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA +++ +VD++F R+ D +E+N STF +EM+ETAF+++N+ + SL+++DELGR
Sbjct: 486 SFVPAQYASFPIVDQLFARVSMDDCIEANVSTFASEMRETAFILRNIGKNSLVIIDELGR 545
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI-RNNRLD 531
TS+ DG AIA S E L+ +A+ F +H L+++ V +H V I + +++
Sbjct: 546 GTSTRDGLAIALSISEALVESQAFVWFTTHFRELAQIMNERAGVVNMHLKVDISQEDKMV 605
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSIT 568
+++ +G HYGL LA V LP V+E A ++
Sbjct: 606 MLYKIANGFVKEEHYGLALARVVNLPPLVLEVAEKVS 642
>gi|358380456|gb|EHK18134.1| hypothetical protein TRIVIDRAFT_194557 [Trichoderma virens Gv29-8]
Length = 828
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 211/635 (33%), Positives = 349/635 (54%), Gaps = 34/635 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++++LE++ L SA K LF +L T T G+R+LR N+LQP D +
Sbjct: 208 MMIDISAMQSLEVMRNLKSA-----KSKECLFGLLDHTLTPMGSRVLRNNMLQPPTDFDG 262
Query: 61 -INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I TR D L+E+++NE++F + + L F + ++ L + T+ V V+
Sbjct: 263 FIKTRYDALEEMVTNEEMFHEIRKALELF-HDAEKTLTKLVII--RNTTGVFAVEEQ--- 316
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
I+ I+++K+ L+++P L + L AQS LL I R++C E I I +VI+ DV
Sbjct: 317 ---INHILMIKSFLESVPDLYRALHPAQSDLLVKI-RNLCRPETTVPILLNIKKVIEADV 372
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ + P R Q+ FA+K GI G+LD+AR+++ + +E +H ++K E+ ++ L ++
Sbjct: 373 TYMKSPLDLRNQRAFAVKSGISGMLDVARQTYRELNEVIHIYSDKVSEDYRVA-ASLKYD 431
Query: 240 NRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
NR+ ++ IP + + +P FI V+ + I C TL+L LN R + E +R++
Sbjct: 432 NRRLYWFRIPRVGLDMEAIPQDFINVIPKKSYIECQTLDLVKLNQRLLDTSNEIIMRSDA 491
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ LV +R VS L + E + L+DMI +SF +T+ Y RP+ + LA+
Sbjct: 492 VIRGLVKELRRQVSPLFRVCESIALVDMI-SSFGQITTTRD---YVRPNIEDT--LALKS 545
Query: 359 GRHPILES-IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHPIL+ + ++++PN+ + +E VTG NMSGKSTY++ V L+ I+AQIGC+VPA
Sbjct: 546 ARHPILDKKMVSEYVPNDYYATERYRFHCVTGCNMSGKSTYIRSVALLQIMAQIGCFVPA 605
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
F+T ++ IF R+ T DN+E+N S+F EM+E AF+++N+ +SL ++DELGR TS
Sbjct: 606 EFATFPIIHNIFARISTQDNIEANLSSFGVEMREMAFILKNIDNKSLAIIDELGRGTSVR 665
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN-----RLDF 532
DG AIA + E L+ A FA+H L+ + P V LH +L
Sbjct: 666 DGMAIAMAISEALIDTGASIWFATHFVELARVLADRPGVLNLHLASNTSVGDGGIPQLTM 725
Query: 533 KFQLKDGP-RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQM 591
++ G HYG+ LA G+P + I A S+ + + K+ + + YK+I
Sbjct: 726 LYKATAGTVDDENHYGIALARAIGMPESFINCAESVANDLRKRRESNRQ-SSESYKEIHR 784
Query: 592 LYHAAQRLICLKYSN--QDEESIRHALQNLKESFI 624
+K +N ++E++ L+ L+E +I
Sbjct: 785 RKLVLNLYEAIKQANNSSNKEALPGYLKRLQEEYI 819
>gi|302893761|ref|XP_003045761.1| hypothetical protein NECHADRAFT_90667 [Nectria haematococca mpVI
77-13-4]
gi|256726688|gb|EEU40048.1| hypothetical protein NECHADRAFT_90667 [Nectria haematococca mpVI
77-13-4]
Length = 855
Score = 324 bits (831), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 201/584 (34%), Positives = 324/584 (55%), Gaps = 31/584 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++++LEI++ L + K SLF ++ T T G R+LR+++LQP +
Sbjct: 233 MMIDISAIQSLEIMQNLRNP-----KSKDSLFGLMNHTTTPMGARMLRSSILQPPTRADL 287
Query: 61 -INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I R + LDEL +NE++F + + L+ F ++T+++L PK + +K
Sbjct: 288 YITPRYEALDELTTNEEMFREIRKALKLF-RDTEKILTKLIVVPKNMP--------IQKV 338
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ I+ ++++K+ L+A+ L L+ A LL + R +C E +I I+ DV
Sbjct: 339 EEQINHVLMVKSFLEAVSELYLALEPATCDLLVRV-RDLCHPELTNRGLDKIRHTIEADV 397
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK--LP 237
+ Q+ FA+KGGI+G+LD+AR+++ + +E VH ++ L+ L
Sbjct: 398 TYMNSALDLWNQRTFAVKGGINGMLDVARQTYKEQTEEVHKYLDRLLIILETHGFGAGLK 457
Query: 238 FNNRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
++N + ++ + D +G+ LP FI +V+ + I C TL L LNVR AA E +R+
Sbjct: 458 YDNGRKYWFRLRAADFEGRPLPDEFINIVRKKDKIECQTLALIKLNVRLADAAHEVVLRS 517
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ ++AL+ +R++V L L E + L+DM V SFA +T+ Y RP + +A+
Sbjct: 518 DSIVQALITDLRQEVPHLFRLCESIALVDM-VTSFAQLATTR---DYVRPDL--DTAMAL 571
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
G RHP+L+ +D F+PN+ F SE+ +VTG NMSGKSTY++ V L+ I+AQIG +V
Sbjct: 572 KGARHPVLDKTMDDSFVPNDYFASESFAFHVVTGCNMSGKSTYIRAVALLQIMAQIGSFV 631
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ +V IF R+ DN+ESN STF EM+E AF+++N+ ++SL V+DELGRATS
Sbjct: 632 PAKYAAFSIVHSIFARVSLDDNIESNLSTFSVEMREMAFILRNIDDKSLAVIDELGRATS 691
Query: 476 SSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN-----RL 530
+ DG AIA + E L+ KA FA+H +L+ P V LH + +
Sbjct: 692 NRDGLAIAIAMSEALIQSKASVWFATHFSDLTRAFAQRPGVLNLHLAAITSTTADGLPHI 751
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
++ G HYG+ LA GLP I+ A + I +K
Sbjct: 752 KMLYKATTGAVGDEHYGINLARAIGLPQGFIDKAEEVAKDIRRK 795
>gi|119497385|ref|XP_001265451.1| DNA mismatch repair protein Msh4, putative [Neosartorya fischeri
NRRL 181]
gi|119413613|gb|EAW23554.1| DNA mismatch repair protein Msh4, putative [Neosartorya fischeri
NRRL 181]
Length = 882
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 193/581 (33%), Positives = 335/581 (57%), Gaps = 26/581 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+ID +++ +LE+I+ L +A + SLF +L T T G RLLRAN+LQP DI
Sbjct: 196 MSIDLSTITSLELIQNLQNA-----KSEDSLFGLLNETLTPMGARLLRANILQPCTDIPK 250
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D +++L + E +F + Q L+ F + D+VL P K T + ++
Sbjct: 251 LLARYDAVEDLSTKEDMFISVRQALKGF-IDADKVLTSLILAPTKRTFQYVEQS------ 303
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++++I+LKT + ++ + K L AQS LL I R +C + +I + + E ++E V
Sbjct: 304 --VNNVIMLKTYVSSIKSIYKALATAQSSLLMTI-RELCAPAGHRAIEQLVEETLNEHVT 360
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ + ++ G++ LLD+AR+++ + + +L K E L NL L F++
Sbjct: 361 YQTKPLDLRNQRIYCVRAGVNSLLDVARQTYKEANIDAADLVAKLSESLNF-NLDLKFDS 419
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
+ +Y+S+ +++ LP FI + + N I C TL+L LN + A E ++ +
Sbjct: 420 ARQYYISVSASEVK-TLPEIFINIYRRKNRIECQTLDLVKLNQKIIDAHNEVINMSDQTI 478
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
++L++ + ++SVL ++E + +LDM+ +FA + + Y RP T+ LAI GR
Sbjct: 479 QSLINDVCSEISVLFKVSEAIAMLDMLA-AFAELAT---CNEYIRPELTD--VLAIKSGR 532
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HPI E IH FI N+ + ++ + I+TG NMSGKSTY++ + L+ I+AQIGC+VPA +
Sbjct: 533 HPIREKIHTKKFISNDAYATQQSRFQIITGSNMSGKSTYIRSLALMTIMAQIGCFVPAEY 592
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
++ V+ ++F R+ T D+LE+N STF EM+E AF+++N+ RS++++DELGR TS++DG
Sbjct: 593 ASFPVMHQLFARVSTSDDLEANVSTFAAEMREMAFILRNIEPRSMVIVDELGRGTSTTDG 652
Query: 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN--RLDFKFQLK 537
AIA + E L+ A F +H +L+ + V LH I + ++ +++
Sbjct: 653 LAIAIAIAEALIESHALVWFVTHFRDLALILAERSGVVSLHLAAEISPDISQMVMLYKIA 712
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
+GP YGL +A++ LP +E A++++ ++ K +R
Sbjct: 713 EGPDTTQFYGLAVAKLVDLPPGALECAQAVSEKLNKIAQRR 753
>gi|358366935|dbj|GAA83555.1| DNA mismatch repair protein Msh4 [Aspergillus kawachii IFO 4308]
Length = 905
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 195/628 (31%), Positives = 354/628 (56%), Gaps = 28/628 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+ID +++ +LE+I+ +H+A K SL+ +L T T G RLLRAN+LQP +
Sbjct: 178 MSIDLSTIVSLELIQNIHNA-----KSKDSLYGLLNETLTPMGARLLRANILQPSTEEPK 232
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D +++L + E +F + Q L+ F + D+VL P K + + +
Sbjct: 233 LQARYDAVEDLSTKEDMFISVRQALKGF-VDADKVLTSLILVPNKRAFQYV--------E 283
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++++I++KT + A+ + K L A+S LL I R +C + ++++ I E ++E V
Sbjct: 284 QSVNNVIMVKTYVGAIKSVYKALTAAESSLLTTI-RELCAPAGHRAVQQMIEETLNEHVT 342
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ + ++ G++ LLD+AR+++ + + +L + E + L L F+
Sbjct: 343 YQTRPLDLRNQRIYCVRAGVNSLLDVARQTYKEANTDAADLVAELAEAHSIA-LDLKFDR 401
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
+ +Y+S+P I+ LP FI V + N I C TL+L LN + A E ++ +
Sbjct: 402 ARQYYISLPATAIES-LPDVFINVYRRKNRIECQTLDLVKLNQKITDAHNEVINMSDETV 460
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L+ I ++S L ++E + +LDM+ +FA ++ Y RP T+ LAI GR
Sbjct: 461 QELIHDICSEISGLFKISEAIAMLDMLA-AFAQLATSHD---YIRPELTDT--LAIKSGR 514
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HPI E IH FIPN+ + ++ + I+TG NMSGKSTY++ + L+ ++AQIGC++PA +
Sbjct: 515 HPIREKIHTKKFIPNDAYATQQSRFQIITGCNMSGKSTYIRALALMSVMAQIGCFIPAEY 574
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
++ +V ++F R+ T D+LE+N STF EM+E AF+++N+ RS++++DELGR TS++DG
Sbjct: 575 ASFPIVHQLFARVSTSDDLEANVSTFAAEMREMAFILRNIEPRSMVIVDELGRGTSTTDG 634
Query: 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN--RLDFKFQLK 537
AIA + E L+ A F +H +L+ + V LH + + ++ +++
Sbjct: 635 LAIAIAIAEALVESHALVWFVTHFRDLALIMGERNGVVSLHLAAEVSPDASKMTMLYKIA 694
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN--CLQYKQIQMLYHA 595
+GP YGL LA++ LP V+ETA+ ++ ++ + +R + ++ ++
Sbjct: 695 EGPDTNQFYGLALAKLVDLPPGVLETAQQVSEKLNQLAKRRHSKSKALAVTRRRNLILSL 754
Query: 596 AQRLICLKYSNQDEESIRHALQNLKESF 623
++L+ ++ + E++R L+ L++ F
Sbjct: 755 KEQLLLVRNGTMEGETLRKWLKRLQDDF 782
>gi|212536548|ref|XP_002148430.1| DNA mismatch repair protein Msh4, putative [Talaromyces marneffei
ATCC 18224]
gi|210070829|gb|EEA24919.1| DNA mismatch repair protein Msh4, putative [Talaromyces marneffei
ATCC 18224]
Length = 886
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 198/628 (31%), Positives = 355/628 (56%), Gaps = 27/628 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ +LE+I+ L A + LF +L T+T G+RLLR N+LQP + E
Sbjct: 206 MMIDLSTAASLELIQNLQKA-----KSRDCLFGLLNETQTPMGSRLLRTNILQPPTEQEK 260
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D ++EL + E +F+ + + L+ F + D+VL P + L + + ++S
Sbjct: 261 IAARYDAVEELSTKEDMFYAIREALKNFI-DADKVLTSIALNPVR-----LSIAHVEQS- 313
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ +++LK+ + ++ + + L A S LL I + C Y I+ I E +++DV+
Sbjct: 314 --VNHVVMLKSYVYSILPIYEALAGANSTLLIKI-KDACATGNYELIKNAIDETLNDDVV 370
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ R P R Q+ +A+K G++ LLD+AR+++ +++ L + E L L+L ++
Sbjct: 371 YQRKPLDLRNQRTYAVKTGVNSLLDVARQAYKESNADAAELVSVLSERHNL-TLELKYDT 429
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
+ +Y+S+ +++G LP FI V+K + I C TL+L LN R + E ++ +
Sbjct: 430 ARSYYISLSAFELEGALPDEFINVIKRRDRIECQTLDLVKLNQRIADSHHEVISMSDQAV 489
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L++ I E V L ++E + LDM+ ++FAH ++ + Y RP T+ LAI GR
Sbjct: 490 QELLEKICEGVPSLFRISEAIATLDML-SAFAHLVT---IQEYVRPEITD--VLAIKSGR 543
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP+ E I D F+PN+ + S+ + I+TG NMSGKSTY++ + L I+A IGC+VPA +
Sbjct: 544 HPLHEKILKDKFVPNDTYASQQSRFQIITGCNMSGKSTYIRSIALTAIMAHIGCFVPADY 603
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
++ ++ ++F R TVD + ++ STF EM+E +++++NV RSLI++DELGR TS++DG
Sbjct: 604 ASFPIIHQLFARAATVDEINASVSTFAGEMREISYILRNVDGRSLIIVDELGRGTSTTDG 663
Query: 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI--RNNRLDFKFQLK 537
AIA + E L+ A+ FA+H +L+ + V L V + ++++ ++++
Sbjct: 664 LAIAIAIAEALVDSHAFVWFATHFRDLACIMAERSGVINLSLAVKLSHESSKMTMLYKIQ 723
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-KEVKRMEINCL-QYKQIQMLYHA 595
+G YGL LA+V P V+E A+ +++ + + E + + L ++ ++
Sbjct: 724 EGHVQEKFYGLALAKVLPFPPQVLEVAQQVSTHLYRIAEDRAISSKVLGASRKRNLVLQL 783
Query: 596 AQRLICLKYSNQDEESIRHALQNLKESF 623
++L+ N D E +R L+ L++ F
Sbjct: 784 REQLLQAHNGNIDGEDLRQWLKRLQDDF 811
>gi|310798991|gb|EFQ33884.1| MutS domain V [Glomerella graminicola M1.001]
Length = 942
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 208/641 (32%), Positives = 352/641 (54%), Gaps = 46/641 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQP--LKDI 58
M ID +++ +LEI++ L S K SLF +LK T+T G+R+LR+NLLQP LKD
Sbjct: 275 MMIDVSAIISLEILQNLRD-----SKSKDSLFGILKQTRTPMGSRVLRSNLLQPSTLKD- 328
Query: 59 ETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
+ R D L+EL+ N ++F + + L+ + +RVL P K + +
Sbjct: 329 SYLEPRYDALEELLDNHEMFLEIREALKSV-LDIERVLTQLVIIPNKPS--------VEA 379
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
S+ ++ I+++KT LDA+P + + L+ A S LL I R +C+ E ++R I + I ED
Sbjct: 380 SERAMNHILMVKTFLDAVPTIYQALRPATSPLLIKI-RDLCQPELTETVRNLIYKSIIED 438
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVH----NLANKYREELKLPNL 234
V + + R Q+ FA+K G++GLLD+AR+++ + + VH L N+Y E L
Sbjct: 439 VTYVKSALDLRNQRTFAVKSGVNGLLDVARQAYKENTNDVHIHVEELNNEYNIEADLR-- 496
Query: 235 KLPFNNRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
++ + +++ + D + + +P + + G I C T+ L LN R + E
Sbjct: 497 ---YDTGRKYWVRLRAVDFEERPIPPVLVNQTRKGPYIECLTVRLKKLNQRIADSVAEVV 553
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ ++ ++ L+D+IR + L + + + LLDM+ SFA + ST + + RP ++
Sbjct: 554 MLSDKVIQDLIDSIRTQLQPLYRVCDSIALLDMLA-SFAQSSST---NDWRRPEISDT-- 607
Query: 354 LAIDGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
LA+ RHPIL+ S+ + F+PN+ + ++ +VTG NMSGK+TY++ + L+ I+AQIG
Sbjct: 608 LAMKAARHPILDKSLRDHFVPNDYYATDEYRFHVVTGCNMSGKTTYIRSIALLQIMAQIG 667
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
C+VPA +++ +V IF R+ T D +E N S F EM+E AF++ NV++RS++++DELGR
Sbjct: 668 CFVPAEYASFAIVRNIFARVTTDDKIEFNMSRFSLEMREMAFILSNVTDRSIVIIDELGR 727
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN---- 528
ATS+ DG AIA + E L+ A FA+H L+++ +P V LH I
Sbjct: 728 ATSTRDGLAIALAMAEALIQSHAVVWFATHFTELADVLANHPGVLNLHLATQISTTADNV 787
Query: 529 -RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR----SITSRITKKEVKRMEINC 583
++ ++++ G + YG+ LA+ P +E A S+ R KK++
Sbjct: 788 PKMTMLYKVESGKTNDSMYGITLAKAMPFPKRFLEVAEQVAVSLRQRREKKKLGSETRKI 847
Query: 584 LQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFI 624
L +++ + H L + S DE +++ L L+E FI
Sbjct: 848 LNRRKLILNLH--DHLKQVSNSELDEPAMKSYLIRLREEFI 886
>gi|340520902|gb|EGR51137.1| DNA mismatch repair protein [Trichoderma reesei QM6a]
Length = 876
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 213/639 (33%), Positives = 345/639 (53%), Gaps = 44/639 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++++LE++ L SA K LF +L T T G+R+LR N+LQP D +
Sbjct: 256 MMIDISAMQSLEVMRNLKSA-----KSKECLFGLLNHTLTPMGSRVLRNNMLQPPTDFDG 310
Query: 61 -INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I TR D L+E+++NE++F + + RK+ + ++ K T+ V V+
Sbjct: 311 FIKTRYDALEEMVTNEEMFHEIRKG-RKYTWDVIKLATQLVTIRK--TTGVFAVEEQ--- 364
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
I+ I+++K+ L+++P L + L A+S LL I R++C E I I +VI+ DV
Sbjct: 365 ---ITHILMIKSFLESVPELYRALHPAKSDLLIKI-RNLCRPETTVPILLGIRKVIEADV 420
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ + P R Q+ FA+K GI G+LD+AR+++ + +E +H + + E+ ++ L F+
Sbjct: 421 TYMKSPLDQRNQRAFAVKSGISGMLDVARQTYRELTEVIHAHSAEVSEDYRVA-ASLKFD 479
Query: 240 NRQGFYLSIPHKDIQ-GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
NR+ ++ IP D+ +P FI V+ +I C TL+L LN R + E +R++
Sbjct: 480 NRRMYWFRIPTADLDIESIPPEFINVIPKKKHIECQTLDLVKLNQRLLDTSNEIIMRSDA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ LV +R V L + E + L+DMI +SF +T+ Y RP + LA+
Sbjct: 540 AIRDLVKELRRQVPPLFRVCESIALVDMI-SSFGQVTTTR---DYVRPGIEDT--LALKA 593
Query: 359 GRHPILES-IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHPIL+ + ++++PN+ + S+ VTG NMSGKSTY++ V L+ I+AQIGC+VPA
Sbjct: 594 ARHPILDKRMASEYVPNDYYASQHHRFHCVTGCNMSGKSTYIRSVALLQIMAQIGCFVPA 653
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
F+T ++ IF R+ DN+E+N S+F EM+E AF+++N+ +SL ++DELGR TS
Sbjct: 654 EFATFPIIHNIFARISAQDNIEANLSSFGVEMREMAFILKNIDNKSLAIIDELGRGTSVR 713
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN-----RLDF 532
DG AIA + E L+ A FA+H L+ + YP V LH +L
Sbjct: 714 DGMAIAMAISEALIDTGASIWFATHFVELARILADYPGVLNLHLASDTSVGEGGIPQLTM 773
Query: 533 KFQLKDG---PRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-KEVKRMEINCLQYKQ 588
+ G H HYG+ LA G+P + I+ A + + K +E R + KQ
Sbjct: 774 LYNATAGIVNDEH--HYGIALARAIGMPDSFIKFAEHVADDLRKRRESSRQSSEYYKEKQ 831
Query: 589 ----IQMLYHAAQRLICLKYSNQDEESIRHALQNLKESF 623
+Q LY A + + + E++ L+ L+E F
Sbjct: 832 RDKLVQNLYEALEE----AKKSLNGEALPGYLKRLEEEF 866
>gi|396478566|ref|XP_003840562.1| similar to DNA mismatch repair protein mutS [Leptosphaeria maculans
JN3]
gi|312217134|emb|CBX97083.1| similar to DNA mismatch repair protein mutS [Leptosphaeria maculans
JN3]
Length = 899
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 197/630 (31%), Positives = 344/630 (54%), Gaps = 42/630 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ L +A + LF +L T T G RLL+ N+LQPL D +
Sbjct: 218 MMIDVSTIYSLELIQNLQNA-----RSRDCLFGLLNETLTPMGARLLQNNVLQPLTDADV 272
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++TR +D+L E++FF L+ F + DR+L P + T ++
Sbjct: 273 LHTRYAAVDDLTKKEEMFFATRAALKTF-LDADRILTALIVTPARPT--------LHTTE 323
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+ II+LK + + + + L S +L NI R +C E A I++ I VI+ D
Sbjct: 324 QAINQIIMLKQFVGTVNPIYEALTGTTSTMLNNI-RELCAPENVAPIQELINRVINTDTT 382
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+A+ P R Q+ +A++ G++GLLD+AR ++ + +E + + + E + L L + +
Sbjct: 383 YAKQPLELRNQRVYAVRSGVNGLLDVARTTYKEATEDAYQHSIELSAEHDI-RLDLKYES 441
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ FY+ IP +++ K LP F VV+ I C T+EL N + + E + ++
Sbjct: 442 ARQFYMKIPLSELENKALPPIFTNVVQRKKYIECQTVELMKRNQKIAVSHQEVILMSDQA 501
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+E L++ +R +S++ + E + LLDM P +E L I+ G
Sbjct: 502 VEGLIEEVRSHMSIMFKICEAVALLDM-------------------PQLSET--LGIEAG 540
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E I ++PN+++ ++ ++TG NMSGKSTY++ + L+ I+AQIG YVPA
Sbjct: 541 RHPIKEKIMQTKYVPNDVYATQQTRFQVITGCNMSGKSTYIRSIALMTIMAQIGSYVPAT 600
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ ++ ++F R+G DN+++N STF EM+E AF+++NV +RS++++DELGR TS+ D
Sbjct: 601 YASFPILHQLFARLGMDDNIDTNVSTFAAEMREIAFILRNVDKRSMVIIDELGRGTSTRD 660
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR-LDFKFQLK 537
G AIA + E L+S +A FA+H ++L+ + + V+ LH V I + R + ++
Sbjct: 661 GLAIALAIAEALVSSRALVWFATHFKDLATIMSERAGVQNLHLAVEIESERSMTMLYKAT 720
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI--NCLQYKQIQMLYHA 595
G HYGL LA V LP V+E A + ++ + ++R + L+ K+ +++ +
Sbjct: 721 QGVVKEAHYGLTLARVVPLPPGVVENATQVAQQLERHMLQRKQTCATVLRQKRRKLILNL 780
Query: 596 AQRLICLKYSNQDEESIRHALQNLKESFID 625
+ L+ + E + L LK+ F++
Sbjct: 781 KEHLLQAHSGVLEGEVLTAWLIELKKEFVN 810
>gi|378725709|gb|EHY52168.1| DNA mismatch repair protein MSH4 [Exophiala dermatitidis
NIH/UT8656]
Length = 874
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 189/589 (32%), Positives = 327/589 (55%), Gaps = 32/589 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ +LE+++ + A K L+ +L T T G RLLR+N+LQP D E
Sbjct: 207 MVIDLATIASLELVQNIEHA-----KSKDCLYGLLNETLTPMGARLLRSNILQPSTDHEK 261
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + + EL+S + F + L+ F +TDRVL K + ++
Sbjct: 262 IRKRHEAVGELISKHDMLFAIRSALKSFV-DTDRVLAALVVIQTK--------QGIQYAE 312
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANI----YRSV---CENEKYASIRKRIGE 173
++++++LKT +D+ L + L A S L I RS+ C+ Y+ I I
Sbjct: 313 QAVNNVLMLKTFVDSAKPLWQALTGAGSEELDEIRQERSRSITILCDPASYSEIDAMIRH 372
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
++ DV H+ P R Q+ +A++ G++ LLD+AR+++ + S+ V ++ + + ++ +
Sbjct: 373 SLNPDVSHSTKPIELRNQRVYAVQAGVNELLDVARQTYSEISQDVFDMMEELKNAQEI-D 431
Query: 234 LKLPFNNRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC 292
L+L F + FY+ P ++ K +P F+ V + I C TLEL +N + K A E
Sbjct: 432 LELKFEPGRQFYIRFPAVQVEDKSMPEAFVNVYRKNKWIECQTLELIKMNQKIKDAHNEV 491
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
++ ++ L++A+R + L ++E + +LDM+ + FA S+ + Y +P +
Sbjct: 492 ISLSDHAVQELIEAVRTKIHPLFKISEAIAMLDML-SGFAQMASS---NEYVQPELVDT- 546
Query: 353 PLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
LA+ GRHPI E D ++PN+++ +E + ++TG NMSGKSTY++ + L+ ++AQI
Sbjct: 547 -LAVKAGRHPIREKSQMDRYVPNDMYATEQSRFQVITGCNMSGKSTYIRSIALMAVMAQI 605
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
GC+VPA +++ V ++F R+ T D++E+N STF +EM+E AF+++NVS S++++DELG
Sbjct: 606 GCFVPATYASFPVTSQMFARVSTDDSIEANVSTFASEMRELAFILRNVSAHSIVLIDELG 665
Query: 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN--R 529
R TS++DG AIA + E L+ KA F +H +L + V LH V I + +
Sbjct: 666 RGTSTTDGLAIAIAIAEELIQSKALVWFVTHFRDLPRILAERAGVVNLHLAVDINADASK 725
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
L ++Q+ G YGL LA V LP +V++TA ++ + ++ R
Sbjct: 726 LKMRYQVAQGYEEERFYGLALARVLDLPVSVVDTATRVSHALHERNEAR 774
>gi|327354254|gb|EGE83111.1| DNA mismatch repair protein Msh4 [Ajellomyces dermatitidis ATCC
18188]
Length = 892
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 204/629 (32%), Positives = 361/629 (57%), Gaps = 28/629 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ L + S + LF +L T T G+RLLR+N+LQP +
Sbjct: 203 MLIDLSTIISLELIQNLQN-----SKSRDCLFGVLNETLTPMGSRLLRSNVLQPSTEQAK 257
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++ R + ++EL + E++F+ + Q L+ F ++D+VL P KVT +A++S
Sbjct: 258 LSARYEAVEELSTKEEMFYSVRQALKSF-VDSDKVLTSLIVVPTKVT-----FQHAEQS- 310
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+++I+LKT ++A+ + + L AQS LL I R++C ++Y +I I ++EDV
Sbjct: 311 --INNVIMLKTYVNAIKPIYQALSGAQSTLLLAI-RNLCAPQEYDTIVDMINATLNEDVT 367
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ +A+K GI+ LLD+AR+++ + ++ V LA + +E L L F
Sbjct: 368 YQSRPLDLRNQRTYAVKAGINSLLDVARQTYKEANDDVVALAAQLGDEYDLA-FDLRFET 426
Query: 241 RQGFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ +Y + + LP FI + K I TL+L LN + A E ++
Sbjct: 427 GRHYYFRLLVSALDNTPLPDIFINIFKKKTYIEFQTLDLVKLNRKITDAHNEVINMSDRS 486
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ L++ IR ++ L ++E + LLDM+ + FAH ++ + Y RP T+ LAI G
Sbjct: 487 IQELIEDIRSHIAGLFRVSESIALLDMLAD-FAHLVT---MQNYVRPELTDT--LAIKAG 540
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E IH D ++PN+ + ++ + IVTG NMSGKSTY++ + L+ ++AQIGC+VPA
Sbjct: 541 RHPIREKIHTDKYVPNDAYATQQSRFQIVTGCNMSGKSTYIRSLALMTVMAQIGCFVPAQ 600
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ +V ++F R+ T DN+E+N STF EM+E +F+++N+ +S++++DELGR TS++D
Sbjct: 601 YASFPIVHQLFARVSTDDNVEANVSTFSAEMREMSFILRNIEPKSMVIIDELGRGTSTTD 660
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI--RNNRLDFKFQL 536
G AIA + E L+ A F +H +L+++ V LH V + +++ +++
Sbjct: 661 GLAIAIAIAEALIESHALVWFTTHFHDLAKIMAERNGVVNLHLAVDMSPSTSKMTMLYKI 720
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK-EVKRMEINCLQY-KQIQMLYH 594
DG HYGL LA + P ++ A+ ++ ++ K E +R L K+ +++
Sbjct: 721 ADGFVKDKHYGLFLARLLPFPQPMLRKAQEVSEALSLKIENQRKRSKTLAIAKRRKLILD 780
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKESF 623
++L+ + + E++R L+ L++ F
Sbjct: 781 LKEQLLQAREGVLEGEALRTWLKKLQQEF 809
>gi|121703355|ref|XP_001269942.1| DNA mismatch repair protein Msh4, putative [Aspergillus clavatus
NRRL 1]
gi|119398085|gb|EAW08516.1| DNA mismatch repair protein Msh4, putative [Aspergillus clavatus
NRRL 1]
Length = 887
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 202/632 (31%), Positives = 351/632 (55%), Gaps = 33/632 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+ID ++ +LE+I+ L +A K SLF +L T T G RLLRAN+LQP +
Sbjct: 198 MSIDLPTITSLELIQNLQNA-----KSKDSLFGLLNETLTPMGARLLRANILQPSTEESK 252
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLC---HFCFKPKKVTSKVLDVDNAK 117
+ R D +++L + E +F + Q L+ F + D+VL P K T L V+ +
Sbjct: 253 LLARYDAVEDLSTKEDMFVSIRQALKGF-IDADKVLTSVRQLILVPTKHT--FLYVEQS- 308
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++++I+LKT + ++ + K L AQS LL + R V + A + + I + ++E
Sbjct: 309 -----VNNVIMLKTYVSSIRSVYKALTAAQSSLLMTV-REVIVHSTVAPVEELIEQTLNE 362
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
V + P R Q+ + ++ G++ LLD+AR+++ + + +L +K E L +L L
Sbjct: 363 HVTYQSKPLDLRNQRIYCVRAGVNSLLDVARQTYKEANVDAADLVSKLSESHNL-DLDLR 421
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
F++ + +Y+ IP +++ LP FI V + N I C TL+L LN + A E ++
Sbjct: 422 FDSARQYYIGIPITEMES-LPEVFINVYRKKNRIECQTLDLVKLNQKIIDAHNEVISMSD 480
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
+++L++ + +++S L ++E + +LDM+ +FA + Y RP T+ LAI
Sbjct: 481 QTIQSLINEVCKEISGLFRVSEAIAMLDMLA-AFAQLAT---CSEYIRPELTD--VLAIK 534
Query: 358 GGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHPI E IH FIPN+ + ++ + I+TG NMSGKSTY++ + L+ I++QIGC++P
Sbjct: 535 SGRHPIREKIHTRKFIPNDAYATKQSRFQIITGSNMSGKSTYIRSLALMTIMSQIGCFIP 594
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +++ V+ ++F R+ T D+LE+N STF EM+E A +++N+ RS++++DELGR TS+
Sbjct: 595 AEYASFTVIHQLFARVSTSDDLEANVSTFAAEMREMACILRNIEPRSMVIVDELGRGTST 654
Query: 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN--RLDFKF 534
+DG AI + E + A F +H +L+ + V LH I + ++ +
Sbjct: 655 TDGLAITIAIAESPVESHALVWFVTHFRDLALIMAERSGVVSLHLAAEISPDASQMVMLY 714
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSIT---SRITKKEVKRMEINCLQYKQIQM 591
++ +GP YGL +A + LP V+ETA+ ++ + + K+ + L K+ M
Sbjct: 715 KIAEGPDTTQFYGLAVARLVDLPPGVLETAQRVSENLNELAKRRHSKSRTQMLSRKRNLM 774
Query: 592 LYHAAQRLICLKYSNQDEESIRHALQNLKESF 623
L Q LI + + E +R L+ L+++F
Sbjct: 775 LALREQ-LIHARDGTLEGEELRKWLKRLQDTF 805
>gi|408394477|gb|EKJ73685.1| hypothetical protein FPSE_06303 [Fusarium pseudograminearum CS3096]
Length = 866
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 209/634 (32%), Positives = 343/634 (54%), Gaps = 32/634 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE- 59
M ID +++++LEI++ L + S K SLF +L T T G+RLLR+N+LQP D E
Sbjct: 246 MMIDISAIQSLEIMQNLRN-----SKSKDSLFGLLNHTSTPMGSRLLRSNILQPPTDAER 300
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I TR D L+EL +NE++F + + L+ F + +++L V N +K
Sbjct: 301 VIVTRYDALEELTTNEEMFLEIRKALKMF-HDIEKLLTKLII--------VHTNANVQKV 351
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ I+ ++++K+ L+A+P L L A LL I R C + I +I + I+ DV
Sbjct: 352 EEQINQVLMVKSFLEAIPELYTALGPATCDLLTKI-RGRCCPKITGPILDKIRQTIEADV 410
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ + R Q+ FA+K GI+G+LDIAR+++ + +E +H + E KL N L ++
Sbjct: 411 TYMKSALDLRNQRTFAVKAGINGMLDIARQTYKELTEEIHLHIDALNETHKL-NATLRYD 469
Query: 240 NRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N + ++L D + +P I VV+ + I C TL+L LN+R + E IR++
Sbjct: 470 NGRKYWLRFQAADFDDRPIPDMLINVVRKKDKIECQTLDLVKLNLRLSDTSNEVVIRSDS 529
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
++ L+ +R + L + E + L+DMI +SFA +T+ Y RP + LA+
Sbjct: 530 VVQDLLRELRNNAPHLFQVCESVALIDMI-SSFAQLATTRD---YVRPDISST--LALKA 583
Query: 359 GRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHP+L+ +++ F+PN+ + +E IVTG NM+GKSTY++ V L+ I+AQIG +VPA
Sbjct: 584 ARHPVLDKNMNGKFVPNDYYSTEQYCFHIVTGCNMAGKSTYIRAVALLQIMAQIGSFVPA 643
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+++ ++ IF R+ DN+ESN STF EM+E AF+++N+ +SL ++DELGRATS+
Sbjct: 644 EYASFSIIHSIFARVSLSDNIESNLSTFSVEMREMAFILRNIDNKSLAIIDELGRATSNR 703
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN-----RLDF 532
DG AIA + E L+ +A FA+H +L+++ P V LH +
Sbjct: 704 DGLAIAIAMSEALIESRASVWFATHFIDLTKVLADRPGVLNLHLAATSSTTAEGIPHITM 763
Query: 533 KFQLKDGP-RHVPHYGLLLAEVAGLPSTVIETARSITSRITK-KEVKRMEINCLQYKQIQ 590
++ G R HYG+ LA GLP I+ A + + K +E ++ + +
Sbjct: 764 LYKATSGAIRGEEHYGINLARAVGLPQKFIDKAEEVAEDLRKTREASKLSSESSRLVARR 823
Query: 591 MLYHAAQRLICLKYSNQDEESIRHALQNLKESFI 624
L Q + + EE++ L L+E F+
Sbjct: 824 KLILNLQDALRQAKESGSEEALPGYLTRLQEEFV 857
>gi|328876076|gb|EGG24440.1| mutS like protein [Dictyostelium fasciculatum]
Length = 930
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 204/597 (34%), Positives = 334/597 (55%), Gaps = 56/597 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M IDA +++ LE+I + L G+ N +LF + KT G RLL +N+ QPL D+ET
Sbjct: 333 MQIDAETIKILELIR---NNLDGSRNA--TLFSSINFCKTSQGERLLISNITQPLTDLET 387
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R +C+ ++ NE+ FF + L K + DR+L F +K+ S+ L + K Q
Sbjct: 388 IKMRQNCIKFILKNEKQFFAIIPILGKI-GDLDRMLVKFT---QKIDSRKLGI---KAIQ 440
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ I +II K +L+ +P LA +L LL+ ++C+N +I+ + E
Sbjct: 441 SNIHNIIQFKNSLELIPRLANILSILNDPLLS----AICKNLSNKTIQSSMEETFKYINE 496
Query: 181 HARVPFVARTQQ----------CFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELK 230
H + T +IK G++GLLD+ ++++ ++ + ++ L Y+EE
Sbjct: 497 HPPPASITNTINQGKSTIANTIVSSIKQGVNGLLDVCKKTYYESLQDMNKLTTYYQEEYN 556
Query: 231 LPNLKLPFNNRQGFYLSIP--HKDIQGKLPSTFI-QVVKHGNNIHCSTL--ELASLNVRN 285
L LKL + +GF+ S+P +KD+ LP+ F Q K N CS L +L SL+ RN
Sbjct: 557 LNGLKLQHSTSKGFFFSVPCKNKDLL-HLPNIFFSQTFK---NARCSFLSNDLLSLSRRN 612
Query: 286 KSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTR 345
K E + T I +E L + RE +S L +++ + LLD+++ S + ++ D+
Sbjct: 613 KEVLEEIILMTSISVEKLTNFYREFLSDLFNVSQSIALLDLLM-SLSTYVTFN--DQCVC 669
Query: 346 PHFTENGPLAIDGGRHPILESI-----------HNDFIPNNIFISEAANMVIVTGPNMSG 394
P GPLAI G HP L ++ HN IPN+ I+E +N I+ GPNMSG
Sbjct: 670 PEVYNKGPLAIKKGYHPTLLALASSKKNQDNRRHNHPIPNDTIINETSNCQIIHGPNMSG 729
Query: 395 KSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAF 454
K+TY+QQ+ L+ ++A +G YVP + + V ++I +R+GT DN++ N+STFMTEMKE A+
Sbjct: 730 KTTYIQQIALLTVMAHLGGYVPCQYMAVPVTEKIVSRIGTSDNMQGNASTFMTEMKEIAY 789
Query: 455 VMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYP 514
++++ +E SL+++DELGR TS++DG +IAWS CE + ++ YT+F +H + L L Y
Sbjct: 790 ILESANENSLVIIDELGRGTSNTDGSSIAWSICESISRIQCYTLFITHYKELLSLCHFYG 849
Query: 515 NVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
N+K H L + +Q+ +G + YG+ +AE+A + + + + AR I S++
Sbjct: 850 NIKNFHL-------NLKYTYQITEGISNNTSYGIDIAEMASIDNQICQKARLIRSQL 899
>gi|303281194|ref|XP_003059889.1| MutS 4 [Micromonas pusilla CCMP1545]
gi|226458544|gb|EEH55841.1| MutS 4 [Micromonas pusilla CCMP1545]
Length = 1061
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 188/576 (32%), Positives = 297/576 (51%), Gaps = 83/576 (14%)
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I +I+ ++ L +P + L+ S LL I S C + + S R+ +V + DV+
Sbjct: 467 IKTILGVRATLRVVPGVGDALRACASPLLREIG-STCGKDFFQSFLTRVDDVFEPDVVEG 525
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
R F RT+Q FA+KGG+D LD+ARRSFC+T+EA H L RE +L+L +++ +
Sbjct: 526 RSTFAQRTRQVFAVKGGVDAFLDLARRSFCETTEAAHELLRTTRELAGAESLRLTYSDAR 585
Query: 243 GFYLSIPH-----------KDIQGKLPSTFIQV---------VKHGNN---------IHC 273
GF LS+ + G + + +V + G + + C
Sbjct: 586 GFQLSVSAVEFGVMTACATRGSGGGVLHSLQRVDGRVETRRDARGGGDAYLNATPPSVKC 645
Query: 274 STLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAH 333
+T L LN R+K A + + R+ ++ LV ++R++ L L+ L LLD+++ A
Sbjct: 646 TTSTLERLNARHKEAMDDAFARSAGVVDELVRSVRDNFPALGALSAALSLLDVLLAFAAK 705
Query: 334 TISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHND----------FIPNNIFISEAAN 383
++ + +TRP FT NGPLAI+ GRHP++E F+PN+ F+S+A
Sbjct: 706 VMNARGA--WTRPAFTSNGPLAIEEGRHPLMEGGVCGGGGGGGGGGLFVPNSTFLSDAFP 763
Query: 384 MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSS 443
+VTGPNMSGKSTY +QV +V+LA GCYVPA F + +D I+ R+GT D+LE+++S
Sbjct: 764 FSLVTGPNMSGKSTYARQVATLVVLAHAGCYVPASFFSCPPIDAIYARVGTGDSLETDAS 823
Query: 444 TFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503
+FM EM+E ++ N + SL+++DELGR+TSS DG +AW+C E LL + +FA+H
Sbjct: 824 SFMVEMREMQHILANATRDSLVLVDELGRSTSSGDGERVAWACAEALLRMDLKCVFATHA 883
Query: 504 ENLSELATIYPNVKILHF---------------------------YVVIRNNRLDFKFQL 536
+ L LAT+YP V++ V LDF+++L
Sbjct: 884 DRLRGLATMYPGVRVSSLSVRVVGGGGGVVGGGGGRGYGRDGRGYDAVHGRGELDFRYKL 943
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSIT------------SRITKKEVKRMEINCL 584
DG V HYGL LA G P+ +++ A +I SR+T + + +
Sbjct: 944 VDGECVVDHYGLRLAATMGFPNAMMDAAWAIAREVDARDGNGGGSRVTTTNTE--DPDPW 1001
Query: 585 QYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLK 620
++ + + AQR + L + D + AL+ K
Sbjct: 1002 GVERARRVATVAQRAMLLCAGDSDGDGAAAALEPGK 1037
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 29 RSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSN 74
RSLF +L T T G RLL+A+LLQPL+D TI+ RLD L EL+S
Sbjct: 320 RSLFGLLNTCVTRSGARLLKASLLQPLRDHATIDARLDALSELLSG 365
>gi|46122645|ref|XP_385876.1| hypothetical protein FG05700.1 [Gibberella zeae PH-1]
Length = 861
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 201/584 (34%), Positives = 326/584 (55%), Gaps = 38/584 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE- 59
M ID +++++LEI++ L + S K SLF +L T T G+RLLR+N+LQP D E
Sbjct: 246 MMIDISAIQSLEIMQNLRN-----SKSKDSLFGLLNHTSTPMGSRLLRSNILQPPTDAER 300
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
+ TR D L+EL +NE++F + + L+ F + +++L V N +K
Sbjct: 301 VVVTRYDALEELTTNEEMFLEIRKALKMF-HDIEKLLTKLII--------VHTNANVQKV 351
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ I+ ++++K+ L+A+P L L A LL I R C E I +I + I+ DV
Sbjct: 352 EEQINQVLMVKSFLEAIPELYTALGPATCDLLTKI-RGRCCPEITGPILDKIRQTIEADV 410
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ + R Q+ FA+K GI+G+LD+AR+++ + +E +H + KL N L ++
Sbjct: 411 TYMKSALDLRNQRTFAVKAGINGMLDVARQTYKELTEEIHLHIDALNGTHKL-NATLRYD 469
Query: 240 NRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N + ++LS D + +P I VV+ + I C TL+L LN+R + E IR++
Sbjct: 470 NGRKYWLSFQAADFDDRPIPDILINVVRKKDKIECQTLDLVKLNLRLSDTSNEVVIRSDS 529
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
++ L+ +R++ L + E + L+DMI +SFA +T+ Y RP + LA+
Sbjct: 530 VVQDLLRELRDNAPHLFQVCESVALIDMI-SSFAQLATTRD---YVRPDISST--LALKA 583
Query: 359 GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP+L+ F+PN+ + +E IVTG NM+GKSTY++ V L+ I+AQIG +VPA
Sbjct: 584 ARHPVLDK----FVPNDYYSTEQYCFHIVTGCNMAGKSTYIRAVALLQIMAQIGSFVPAE 639
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
++ ++ IF R+ DN+ESN STF EM+E AF+++N+ +SL ++DELGRATS+ D
Sbjct: 640 YAAFSIIHSIFARVSLSDNIESNLSTFSVEMREMAFILRNIDNKSLAIIDELGRATSNRD 699
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN-------RLD 531
G AIA + E L+ +A FA+H +L+++ P V L+ Y+ ++ +
Sbjct: 700 GLAIAIAMSEALIESRASVWFATHFIDLTKVLADRPGV--LNLYLAATSSTTAEGIPHIT 757
Query: 532 FKFQLKDGP-RHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
++ G R HYG+ LA GLP T I+ A + + KK
Sbjct: 758 MLYKATSGAIRGEEHYGINLARAIGLPQTFIDKAEGVVEDLRKK 801
>gi|429861713|gb|ELA36385.1| DNA mismatch repair protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 912
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 201/637 (31%), Positives = 356/637 (55%), Gaps = 37/637 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQP--LKDI 58
M ID +++ +LEI++ L K +L +L TKT G+R+LR+NLLQP LK+
Sbjct: 251 MMIDVSTILSLEILQNLRKP-----QSKDNLVGLLNQTKTPMGSRVLRSNLLQPSTLKEA 305
Query: 59 ETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
++ R + ++EL + +F + + L FP + +++L P + ++
Sbjct: 306 -YLDPRYEAVEELHKSVDMFVEVRKAL-SFP-DVEKMLTRLVLVPPQPSTAA-------- 354
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+++ + +++ +K +D LP L + ++ A S LL I R + E A +R I E I ED
Sbjct: 355 TESSMDNVLKVKAFVDGLPDLYQAMRPAVSPLLTKI-RDLFRPEMIAPLRTLIYETIHED 413
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
V H + R Q+ FA+K G++GLLD+AR+++ + +E VH ++ EL L + KL +
Sbjct: 414 VTHTKKALDQRNQRAFAVKAGVNGLLDVARQAYKENTEDVHKHVDQVNGELDL-DAKLQY 472
Query: 239 NNRQGFYLSIPHKDIQGK-LPSTFI-QVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+ ++G+ L + + + + +P + +VVK GN + C T+ L LN R + E ++
Sbjct: 473 DPKRGYSLRMREVNFEDRPIPDILVNRVVKRGN-LECMTIRLKQLNQRISDSVAEIAMQC 531
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ +E L+D IR ++VL + E + LLDM+ SFAH ST + RP ++ LA+
Sbjct: 532 DKVIEDLIDNIRTQIAVLYRICESVALLDMLA-SFAHVSSTY---DWVRPEVSDT--LAL 585
Query: 357 DGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
RHPIL+ + + +PN+ + + I+TG NMSGK+TY++ + L+ I+AQIGC+V
Sbjct: 586 KAARHPILDRELKEECVPNDFYADDNYRFQIITGCNMSGKTTYIKSIALLQIMAQIGCFV 645
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA +T+ +V IF R+ T DN+E+N S+F EM+E AF++ NV ++S++++DELGRATS
Sbjct: 646 PAERATLPIVHSIFARVSTDDNIEANLSSFSKEMREMAFILNNVDDKSMVIIDELGRATS 705
Query: 476 SSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN-----RL 530
+ DG AIA + E L+ +A F +H L+E+ P V LH + N RL
Sbjct: 706 ARDGLAIAIAMAEALIQSRAKVWFTTHFAQLAEVLNDRPGVLNLHLASHLSNTSRGDPRL 765
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ--YKQ 588
++++ G YG+LLA+ P ++ A ++ I + +K+ + + + ++
Sbjct: 766 TMTYKVESGKVEEIPYGILLAKAMDFPKRFLDVAEHVSQSIREDRLKKQQTSEARRLVRE 825
Query: 589 IQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFID 625
+++ ++L + S D+ ++ L+ L+ F++
Sbjct: 826 RKLVLSLHEQLKQARNSQMDDAALASYLKRLQVEFVE 862
>gi|339252618|ref|XP_003371532.1| MutS protein [Trichinella spiralis]
gi|316968211|gb|EFV52516.1| MutS protein [Trichinella spiralis]
Length = 1013
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 202/636 (31%), Positives = 358/636 (56%), Gaps = 32/636 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID+ + ++LE+I L S + + K SL +L T T G RLLRA++LQP D++T
Sbjct: 376 LKIDSNAAKDLELIVSLKS----SESVKGSLLGILNHTYTFSGARLLRASILQPSSDLQT 431
Query: 61 INTRLDCLDELMSNEQL--FFGLSQFLRKFPKETD-RVLCHFCFKPKKVTSKVLDVDNAK 117
IN RLD L+E+++N ++ L+ + TD L FC + + D +
Sbjct: 432 INERLDVLEEILNNGRVKASTALTSLRSAISRMTDVERLIGFCIH-------IGEEDCGR 484
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ I ++ LK L+ + L ++L ++ LL Y V +++ I ++I I +
Sbjct: 485 FAEYRIKQLLCLKNTLELVEPLRQILSTFKTPLLKE-YFEVLGDKRLKKISEKISHYIYD 543
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D + + R Q CFAIK ++GLLD+ RR++ + V + + +E +LP KL
Sbjct: 544 DTMLQKGALNLRNQICFAIKPNVNGLLDVVRRAYSEFQSDVEAYHSMFCQETQLP-FKLS 602
Query: 238 FNNRQGFYLSIPHK--DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
F+ +G+YL++P+ ++ + ++VV+ G N+ C+T E+ LN R + +
Sbjct: 603 FSIARGYYLALPNNGTNVPANVLDRLLKVVRRGGNLICTTREMIKLNDRIEEIVRDILFI 662
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYT--RPHFTENGP 353
++ L L+ +REDV L L +V+ LD+I++ +K +R+ RP FT++
Sbjct: 663 SDNVLNQLLTEMREDVISLYYLCDVISSLDVILSL------SKCCERFQWIRPEFTDS-- 714
Query: 354 LAIDGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
LA++ RHP+LE S+ +DF+ N+I+ +N +I++GPNMSGK+TYL+ V ++ +LAQIG
Sbjct: 715 LAVEKARHPVLELSLQSDFVANDIYAGPDSNFLILSGPNMSGKTTYLKMVGVLQVLAQIG 774
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA +++ ++ +++FTR+ D+LE+NSS+FM EMK+ ++++ + SL+++DELGR
Sbjct: 775 SFVPAKYASFKLCNQLFTRLYHNDSLETNSSSFMVEMKDCKYILEKCTRDSLVLIDELGR 834
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV--VIRNNRL 530
TS +GFA + E L++ KA FA+H+ +L+EL +YP V HF N R+
Sbjct: 835 NTSDEEGFATCVAISEELIATKATVFFATHLLDLAELDRLYPCVDSYHFVANQGAINRRI 894
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS-ITSRITKKEVKRMEINCLQYKQI 589
LK G P YGL LAE+A P ++E A+ + +K+ +++ KQ
Sbjct: 895 HVTHNLKRGLYCGPAYGLELAELAPFPREIVERAKCWLRGWRNEKQNNESQLSSELKKQR 954
Query: 590 QMLYHAAQRLICLKYSNQDEESIRHALQNLKESFID 625
++ + + ++ + D ++ Q++K+ ++D
Sbjct: 955 AVMRFGYRIIQAAQFHDFDPVNVLAYFQHIKKQYLD 990
>gi|326475415|gb|EGD99424.1| DNA mismatch repair protein Msh4 [Trichophyton tonsurans CBS
112818]
gi|326477452|gb|EGE01462.1| DNA mismatch repair protein Msh4 [Trichophyton equinum CBS 127.97]
Length = 878
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 202/629 (32%), Positives = 334/629 (53%), Gaps = 52/629 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ +LE+I+ L +A K LF +L T T G RLLR+N+LQP +I
Sbjct: 201 MMIDLATIVSLELIQNLQNA-----KSKDCLFGILNETLTPMGARLLRSNILQPSTEISK 255
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+NTR D ++EL SNE +FF + Q L+ F ++DRVL P K + A++S
Sbjct: 256 LNTRYDAVEELSSNEGMFFAVRQALKSF-VDSDRVLTALTVIPTKPSFLF-----AEQS- 308
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+++I+LKT L C Y ++ + E +++DV
Sbjct: 309 --INNVIMLKTFL-------------------------CSPRNYEPVQTILKETLNDDVR 341
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ R + +A+K G++ LLD+AR+++ + ++ V L + EE +P L L F +
Sbjct: 342 YQTSALDLRNHRTYAVKAGVNNLLDVARQTYKEANDDVLELCARLTEEYDIP-LDLRFES 400
Query: 241 RQGFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ +Y + D++G LP FI V + + TL+L +N + + E ++
Sbjct: 401 GRHYYFRVRSTDLKGVMLPDIFINVYRKKAYVEFQTLDLVKMNQKITDSHNEVVSMSDQS 460
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ L+D R +S L ++E + LLDMI +FA+ + + Y RP T+ LAI G
Sbjct: 461 IQELIDDARSQISSLFRISEAVALLDMIA-AFAYL---QTIQDYVRPEITDT--LAIKAG 514
Query: 360 RHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E IH+ +IPN+++ S + I+TG NMSGKSTY++ + L+ ++AQIG VPA
Sbjct: 515 RHPIREKIHSTKYIPNDVYASSQSRFQIITGCNMSGKSTYIRSLALMAVMAQIGSSVPAQ 574
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ VV ++F R+ T DN +N STF TEM+E AF+++NV +S++++DELGR T+S+D
Sbjct: 575 YASFPVVHQLFARVSTDDNQATNVSTFSTEMREMAFILRNVDSKSMVIIDELGRGTASTD 634
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR--LDFKFQL 536
G AI+ + E LL A F +H +L + V LH V + + R + +++
Sbjct: 635 GLAISIAIAEALLETHALVWFTTHFHDLPRIMEHRSGVINLHLAVDMSDPRSKITMLYKI 694
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCL--QYKQIQMLYH 594
DG HYGL LA + LP +I A +++ + R + + K+ ++L
Sbjct: 695 VDGYVQEQHYGLALARIFSLPPYLIGVAEEVSNHLALAAQNRAKSPAVISLAKRRRLLLT 754
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKESF 623
++L ++E++R L L+ F
Sbjct: 755 LGEQLRHAHEGTMEDEALREWLLRLQREF 783
>gi|119172807|ref|XP_001238950.1| hypothetical protein CIMG_09972 [Coccidioides immitis RS]
Length = 845
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 188/582 (32%), Positives = 323/582 (55%), Gaps = 50/582 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ L A K LF +L T T G RLLR N+LQP +
Sbjct: 200 MMIDLSTIISLELIQNLQRA-----KSKDCLFGILNETLTPMGARLLRINVLQPSTEPTK 254
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D ++EL + E +F + + L+ F ++D++L P ++T ++A++S
Sbjct: 255 LLGRYDAVEELATREDMFHAVREALKSF-VDSDKILTALTLVPTRIT-----FEHAEQS- 307
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+++I+L+T L C+ +Y I + ++ DV
Sbjct: 308 --INNMIMLRTYL-------------------------CDPSQYEVIESLLDSTLNADVS 340
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ +A+K G++ LLD+AR+++ + + V+ LA+ E L +L L F
Sbjct: 341 YQSRPLDLRNQRTYAVKAGVNSLLDVARQTYKEANTDVNELASHLTEAHNL-SLDLRFET 399
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ +Y +P D++ K LP FI V + + + TL+L LN + + E ++
Sbjct: 400 ARQYYFRLPVSDLEEKQLPGVFINVFRKRSYLEFQTLDLVKLNQKITDSHNEVITMSDKS 459
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ L++ +R ++SVL ++E L +LDM+ ++FA + V Y RP T+ LAI G
Sbjct: 460 VQELIEDVRSEISVLFRISEGLAMLDML-STFAQLVV---VHDYVRPELTDT--LAIKAG 513
Query: 360 RHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E IH N FIPN+ + ++ + IVTG NMSGKSTY++ + L+ ++AQIGC+VPA
Sbjct: 514 RHPIREKIHSNKFIPNDAYATQQSRFQIVTGCNMSGKSTYIRSIALMSVMAQIGCFVPAQ 573
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ +V ++F R+ DN E+N STF EM+E AF+++N+ RS+ ++DELGR TS+ D
Sbjct: 574 YASFPIVTQLFARISADDNTEANISTFSAEMREMAFILRNIGPRSMAIVDELGRGTSTVD 633
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQL 536
G +IA + E L+ A FA+H +L+ + V LH V + +++ +++
Sbjct: 634 GLSIAIAISEALVDSHALVWFATHFTDLARIMAHRNGVVNLHLAVEMSAPTSKMTMLYKI 693
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
DG HYGL LA++ P +++TA++++ ++ + KR
Sbjct: 694 ADGYVKEKHYGLSLAKLMPFPPKILQTAQTVSEELSLRAAKR 735
>gi|345311323|ref|XP_001518846.2| PREDICTED: mutS protein homolog 4 [Ornithorhynchus anatinus]
Length = 518
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 178/475 (37%), Positives = 290/475 (61%), Gaps = 27/475 (5%)
Query: 164 YASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLAN 223
+ I ++I VI++D + + RTQ+C+A++ I+ LDIARR++ + + + +
Sbjct: 42 FGIILEKIKIVINDDARYLKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMIT 101
Query: 224 KYREELKLPNLKLPFNNRQGFYL-------SIPHKDIQGKLPSTFIQVVKHGNNIHCSTL 276
+ E+ LP LK F++ +GF++ ++P+ G+LPS FI+V K N ++
Sbjct: 102 QLAEKYGLP-LKTSFSSARGFFIQMNMNCSALPN----GQLPSEFIKVTKMKNAYSFTSA 156
Query: 277 ELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTIS 336
+L +N R + + E Y T + + L+ I + + L L++ + +LDM++ SFAH +
Sbjct: 157 DLIKMNERCQESLREIYHMTYMIVCKLLSEIYDHIHCLYKLSDTVSMLDMLL-SFAHACT 215
Query: 337 TKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGK 395
+ Y RP FT+ L + G HPILE I + + N+ +I E +N+VI+TGPNMSGK
Sbjct: 216 ---LSDYVRPEFTDT--LGVKQGWHPILEKISMERPVANDTYILEGSNVVIITGPNMSGK 270
Query: 396 STYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFV 455
STYL+Q+ L I+AQIG YVPA +S+ R+ ++IFTR+ D++E+NSSTFM EMKE A++
Sbjct: 271 STYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISMDDDIETNSSTFMKEMKEVAYI 330
Query: 456 MQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPN 515
+QN +++SLI++DELGR T++ +G I+++ CE+LLSLKA+T+FA+H L + IYPN
Sbjct: 331 LQNANDKSLILIDELGRGTNTEEGIGISYAVCEYLLSLKAFTLFATHFLELCHIDAIYPN 390
Query: 516 VKILHFYV-----VIRNNR-LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
V+ +HF V RN + + ++L G HYGL AE + LP ++I A+ IT+
Sbjct: 391 VENIHFEVQHLKNSTRNKESIAYTYKLSKGHTEEKHYGLKAAEASSLPPSIISDAKEITT 450
Query: 570 RITKKEVKRMEINCLQYKQIQMLYHAAQRLI-CLKYSNQDEESIRHALQNLKESF 623
I + ++ +Q + +YH A RL+ + S D +S+R L+ LK+ F
Sbjct: 451 VIARHILQNQRSTPEALRQ-RAVYHLATRLVQSARSSRLDPDSLRVYLRGLKKKF 504
>gi|358400466|gb|EHK49792.1| hypothetical protein TRIATDRAFT_261202 [Trichoderma atroviride IMI
206040]
Length = 873
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 206/602 (34%), Positives = 334/602 (55%), Gaps = 38/602 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M I ++++LE++ L SA K LF +L T T G R+LR N+LQP + +
Sbjct: 253 MMIAIPAIQSLEVMCNLKSA-----KSKECLFGLLNHTLTPMGARVLRNNMLQPSTNFDG 307
Query: 61 -INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I R D L E++++E++F + + L+ F + +R K +T + A +
Sbjct: 308 YIRVRYDALGEMVAHEEMFREIRKALKLF-HDAERTFT------KLITIRPATGITAAEE 360
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
Q I+ I+++K+ L+++P + + L A+S LL I R++C E I + I EVI+ DV
Sbjct: 361 Q--ITHILMVKSFLESVPDIYRALYPAKSDLLVKI-RTICCPETTVPILRMIKEVIEADV 417
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ + P R Q+ FA+K G+ GLLDIAR+++ + ++ +H N EE + + + F+
Sbjct: 418 TYMKSPLDLRNQRTFAVKSGLSGLLDIARQTYKELTDYIHQYTNGVSEEHQAA-VTIKFD 476
Query: 240 NRQGFYLSIPHKDIQGKLPST-FIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
NR+ ++ IP D+ + S FI V+ N+I C T++L LN R + E +R++
Sbjct: 477 NRRMYWFRIPTADLDPESVSQHFINVIWKKNHIECQTMDLVKLNRRLSDTSNEVMLRSDQ 536
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ LV +R++VS L + E + LLDMI SF +T+ Y RP + LA+
Sbjct: 537 IILELVKDLRKEVSPLFRVCESIALLDMIA-SFGQVTTTR---DYVRPLIEDT--LALKA 590
Query: 359 GRHPILES-IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHPIL+ + ++++PN+ + +E VTG NMSGKSTY++ V L+ I+AQIGC+VPA
Sbjct: 591 ARHPILDKKMASEYVPNDYYGTEHHRFHCVTGCNMSGKSTYIRSVALLQIMAQIGCFVPA 650
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
F+T ++ I R+ T D++E+N S+F EM+E AF+++NV +SL ++DELGR T +
Sbjct: 651 EFATFPIIHNILARISTQDSIEANLSSFGVEMREMAFILKNVDSQSLAIIDELGRGTGNR 710
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFY--VVIRNN---RLDF 532
DG AIA + E L+ AY FA+H L+ P V LH I L+
Sbjct: 711 DGMAIAMAISEALIDTGAYVWFATHFIELARALENRPGVLNLHLASNTTIGEGGIPHLNM 770
Query: 533 KFQLKDGP---RHVPHYGLLLAEVAGLPSTVIETARSITSRI-TKKEVKRMEINCLQYKQ 588
++ G H HYG++LA G+P++ IE A + + + +++E R N YK+
Sbjct: 771 LYKATAGTVDDEH--HYGIVLARAMGMPNSFIEVAEKVANDLRSRRESNRQ--NSESYKE 826
Query: 589 IQ 590
I
Sbjct: 827 IH 828
>gi|255083004|ref|XP_002504488.1| MutS 4 [Micromonas sp. RCC299]
gi|226519756|gb|ACO65746.1| MutS 4 [Micromonas sp. RCC299]
Length = 975
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 203/620 (32%), Positives = 320/620 (51%), Gaps = 84/620 (13%)
Query: 28 KRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRK 87
+RSL +L T T GG+RL++A+LLQPL+D TIN RLD ++EL+ + GL+ R+
Sbjct: 259 RRSLLGLLDTCATRGGSRLMKASLLQPLRDHATINARLDAVEELLRS----GGLAHECRR 314
Query: 88 ------FPKETDRVLCHFCFKPKK-----------------VTSKVLDVD-NAKKSQTLI 123
K+ + V F +P++ +S+V +D N + I
Sbjct: 315 RLAATTGGKDVEAVTSMFA-EPRRRPSAPHSAPHSAPEGGPPSSEVRPIDANPGRVAARI 373
Query: 124 SSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHAR 183
+++ + AL+ +P L LK+ + LL I V + +A RI V + DV+ R
Sbjct: 374 RTLLDTRRALEEVPKLGDALKNTNAGLLREIG-EVLRDPFFAGFLHRIDGVFEPDVVDGR 432
Query: 184 VPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQG 243
F A+T+Q FA+K G+D LDIARR+FC+ +EA H L RE L + +L +
Sbjct: 433 SSFSAKTRQVFAVKSGVDAFLDIARRNFCEATEAAHELIRALRERTGLESPRLDYTATGM 492
Query: 244 FYLSIPHKDI----------QGKLPSTFI-------------------QVVKHGNNIHCS 274
F + + D LP+ V++ + C+
Sbjct: 493 FQIKVTRSDFGRYSVNASHFDASLPTLHAIDTLGDDATRPIRRDDDDAAGVRNDRVVRCT 552
Query: 275 TLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHT 334
L +N R +A E R+ +E++ ++R +V+ L L+ L LLD++
Sbjct: 553 CDGLDVINRRCVDSADEAMRRSAAAVESVAASVRANVAALGALSSALSLLDVLCAFAVRV 612
Query: 335 ISTKPVDRYTRPHFTE-NGPLAIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNM 392
+++K Y RP F + PLAI+ GRHP+LE + DF+ N+ ++S A N+ +VTGPN
Sbjct: 613 MTSK--GPYVRPVFGDRESPLAIEAGRHPVLEELPGVDFVANSAYLSPAFNLSVVTGPNG 670
Query: 393 SGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKET 452
GKSTYL+QV ++V+LA GC+VPA F + VD IFTR+GT D++E+++STF E +E
Sbjct: 671 GGKSTYLRQVAVLVVLAHSGCFVPATFFSAPPVDAIFTRVGTSDSMETDASTFAVECREC 730
Query: 453 AFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512
A ++ + SL+++DELGR+T S +G AW+ E LL T+FA+H L +LA +
Sbjct: 731 ARILSRATCHSLVLVDELGRSTDSEEGERFAWATAEALLERGCKTLFATHARRLGKLAQL 790
Query: 513 YPNVKILHFYVVI--------------------RNNRLDFKFQLKDGPRHVPHYGLLLAE 552
YPNV+ V + +N R++ +++L DG PHYGL AE
Sbjct: 791 YPNVRTSTMAVDLVGGRRRVAVDDPNRNGNGDDQNRRMECRYRLVDGACEAPHYGLRAAE 850
Query: 553 -VAGLPSTVIETARSITSRI 571
+ G P+ ++ A +I R+
Sbjct: 851 ALGGFPAEMMRDAWAIARRV 870
>gi|159130430|gb|EDP55543.1| DNA mismatch repair protein Msh4, putative [Aspergillus fumigatus
A1163]
Length = 840
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 189/581 (32%), Positives = 332/581 (57%), Gaps = 26/581 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M++D +++ +LE+I+ L +A + SL +L T T G RLLRAN+LQP +
Sbjct: 196 MSMDLSTIVSLELIQNLQNA-----KSEDSLLGLLNETLTPMGARLLRANILQPCTEKSK 250
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D +++L + E +F + Q L+ F + D+VL P K T + ++
Sbjct: 251 LLARYDAVEDLSTKEDMFISVRQALKGFI-DADKVLTSLILAPTKRTFQYVEQSG----- 304
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+++I+LKT + ++ + K L AQS LL I R +C + +I + I E ++E V
Sbjct: 305 ---NNVIMLKTYVSSINSIYKALATAQSSLLMTI-RELCGPAGHRAIEQLIEETLNEHVT 360
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ + ++ G++ LLD+AR+++ + + +L K E L L L F++
Sbjct: 361 YQTKPLDLRNQRIYCVRAGVNSLLDVARQTYKEANVDAADLVAKVSESHNL-TLDLKFDS 419
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
+ +Y+S+ +++ L FI + + N I C TL+L LN + A E ++ +
Sbjct: 420 ARQYYISVSASEVK-TLSGIFINIYRRKNRIECQTLDLVKLNQKIMDAHNEVINMSDQTI 478
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
++L++ + ++SVL ++E + +LDM+ +FA + + Y RP T+ LAI GR
Sbjct: 479 QSLINDVCSEISVLFKVSEAIAMLDMLA-AFAELAT---CNEYIRPELTD--VLAIKSGR 532
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HPI E IH FIPN+ + ++ + I+TG NMSGKSTY++ + L+ I+AQIGC+VPA +
Sbjct: 533 HPIREKIHTKKFIPNDAYATQQSRFQIITGSNMSGKSTYIRSLALMTIMAQIGCFVPAEY 592
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
++ V+ ++F R+ T D+LE+N STF EM+E AF+++N+ RS++++DELGR TS++DG
Sbjct: 593 ASFPVMHQLFARVSTSDDLEANVSTFAAEMREMAFILRNIEPRSIVIVDELGRGTSTTDG 652
Query: 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN--RLDFKFQLK 537
AIA + E L+ A F +H +L+ + V LH I + ++ +++
Sbjct: 653 LAIAIAIAEALIESHALVWFVTHFRDLALILAERNGVVSLHLAAEISPDISQMVMLYKIA 712
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
+GP YGL +A++ LP V+E A++++ ++ + +R
Sbjct: 713 EGPDTTQFYGLAVAKLVDLPPGVLERAQTVSEKLNRIAQRR 753
>gi|134055156|emb|CAK37101.1| unnamed protein product [Aspergillus niger]
Length = 888
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 192/629 (30%), Positives = 354/629 (56%), Gaps = 28/629 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+ID +++ +LE+I+ +H+A K SL+ +L T T G RLLRAN+LQP +
Sbjct: 161 MSIDLSTIVSLELIQNIHNA-----KSKDSLYGLLNETLTPMGARLLRANILQPSTEESK 215
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D +++L + E +F + Q L+ F + D+VL P K + A++S
Sbjct: 216 LQARYDAVEDLSTKEDMFVSVRQALKGF-VDADKVLTSLILVPNKRA-----LQYAEQS- 268
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYR-SVCENEKYASIRKRIGEVIDEDV 179
++++I++KT + ++ + K L AQS LL I ++C + ++++ I E ++E V
Sbjct: 269 --VNNVIMVKTYVGSIKSVYKALMAAQSSLLTTIREVALCAPAGHRAVQQMIEETLNEHV 326
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ P R Q+ + ++ G++ LLD+AR+++ + + +L + E + L L F+
Sbjct: 327 TYQTRPLDLRNQRIYCVRAGVNSLLDVARQTYKEANTDAADLVAELAETYSIA-LDLKFD 385
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ +Y+S+ ++ LP FI V + N I C TL+L LN + A E ++
Sbjct: 386 RARQYYISLSATTVES-LPDVFINVFRKKNRIECQTLDLVKLNQKITDAHNEVINMSDET 444
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ L+ I ++S L ++E + +LD I+ +FA ++ + Y RP T+ LAI G
Sbjct: 445 VQGLIHNICSEISGLFKVSEAIAILD-ILTAFAQLATS---NDYIRPELTDT--LAIKSG 498
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E IH FIPN+ + ++ + I+TG NMSGKSTY++ + L+ ++AQIGC++PA
Sbjct: 499 RHPIREKIHTKKFIPNDAYATQQSRFQIITGCNMSGKSTYIRTLALMTVMAQIGCFIPAE 558
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ +V ++F R+ T D+LE+N STF EM+E AF+++N+ RS++++DELGR TS++D
Sbjct: 559 YASFPIVHQLFARVSTSDDLEANISTFAAEMREMAFILRNIEPRSMVIVDELGRGTSTTD 618
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN--RLDFKFQL 536
G AIA + E L+ A F +H +L+ + V LH + + ++ +++
Sbjct: 619 GLAIAIAIAEALVESHALVWFVTHFRDLALIMGERNGVVSLHLTAEVSPDASKMTMLYKI 678
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN--CLQYKQIQMLYH 594
+G YGL LA++ LP V+ET + ++ ++ + +R + ++ ++
Sbjct: 679 AEGIDTNQFYGLALAKLVDLPPGVLETTQQVSEKLNQLAKRRHSKSRALAVTRRRNLILS 738
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKESF 623
++L+ ++ + E++R L+ L++ F
Sbjct: 739 LKEQLLLVRNRTMEGEALRKWLKRLQDDF 767
>gi|302695879|ref|XP_003037618.1| hypothetical protein SCHCODRAFT_81041 [Schizophyllum commune H4-8]
gi|300111315|gb|EFJ02716.1| hypothetical protein SCHCODRAFT_81041 [Schizophyllum commune H4-8]
Length = 837
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 204/622 (32%), Positives = 332/622 (53%), Gaps = 53/622 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRS---LFHMLKTTKTIGGTRLLRANLLQPLKD 57
M ID + RNLE++ G K+S LF L T T G RLLR N+L P+
Sbjct: 218 MMIDPETARNLELV--------GNMTHKKSTHTLFGTLNHTFTAMGARLLRTNILSPITV 269
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNA 116
+ +I+ RLD ++E + E F + LR K + D+++ S+ +NA
Sbjct: 270 LPSIDARLDVVEEFVKTEDRFNEVKDALRVLNKMDFDKLIASLA------ASEARPTNNA 323
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
K + T ++ ++ L+ A+ LPLL K L+ +QS LL I R + +E+ I++ + E ++
Sbjct: 324 KPASTRVTQMLSLRNAVKTLPLLYKALEGSQSQLL-KIIRDMLGDERLTKIQELVDERLN 382
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
ED ++ A + +A+K + LLD+AR ++ + + +L + LP L L
Sbjct: 383 EDSTPSKGGIAAVNARVYAVKANCNRLLDVARETYRENIGDIFHLNRTLSDAHTLP-LAL 441
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQV-VKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ GF ++ D++G+LP F+ V +K G + S +EL +N R K A E +
Sbjct: 442 VYQESTGFVFTMKKDDLEGELPRGFLNVGLKKGKWVFTS-MELKKMNARMKDALDETLLL 500
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
++ ++ +V I DV L +E + LLDM+ SFAH RP FT G LA
Sbjct: 501 SDKIIQDMVAEIIVDVGALYKASEAVALLDMLW-SFAHA-------SIIRPEFT--GTLA 550
Query: 356 IDGGRHPILESIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I G+HPILE+I + +PN+++ +++ IV GPNMSGKSTYL+Q+ L++I+A GC
Sbjct: 551 IKSGKHPILETIQSAGSVVPNDVYCDDSSCFQIVQGPNMSGKSTYLRQIALLLIVAMTGC 610
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA +++ R+ D + TR+ D++E + STF +EM +A ++ + +SLI++DELGR
Sbjct: 611 FVPAEYASFRIHDALLTRLSNDDDIERSLSTFASEMATSAMILGLATPKSLILLDELGRG 670
Query: 474 TSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRNN 528
TS +G I+ + E L+ LKA+ FA+H L+ + P+V LH V N
Sbjct: 671 TSPREGVGISHAIAEALVRLKAFVFFATHFGELTTTLSRQPSVVNLHLSVQRSRRTTTNF 730
Query: 529 RLDFKFQLKDG-PRHVPHYGLLLAEVAGLPSTVIETARSITSRIT-------------KK 574
+ F++++ DG P HYGL LA +A LP V+ A+ + S++ K
Sbjct: 731 GVTFQYRIVDGAPEDDSHYGLELARLADLPKDVLTEAKRVASQLAALHARHEESSESNKI 790
Query: 575 EVKRMEINCLQYKQIQMLYHAA 596
++R + L+ + IQ H+A
Sbjct: 791 AIRRKALLRLRTQLIQAYEHSA 812
>gi|425771360|gb|EKV09805.1| DNA mismatch repair protein Msh4, putative [Penicillium digitatum
Pd1]
gi|425776977|gb|EKV15174.1| DNA mismatch repair protein Msh4, putative [Penicillium digitatum
PHI26]
Length = 853
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 202/631 (32%), Positives = 345/631 (54%), Gaps = 39/631 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ +LE+I+ LH+A K SLF +L T T G RLLRA++LQP +
Sbjct: 190 MTIDLATIVSLELIQNLHNA-----KSKESLFGLLNETLTPMGARLLRASILQPSTERVK 244
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R + +++L + E +F + Q L+ F + D+VL P K T + ++
Sbjct: 245 LTARYNAVEDLATKEDMFVSVRQALKGF-MDADKVLTAIILVPTKRTIQYVEQS------ 297
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++++I+LKT + A+ + + L AQS LL I R +C E + SI + I ++E V
Sbjct: 298 --VNNVIMLKTYVSAIKNIFQALGAAQSDLLLTI-RELCAPEGHRSIEELIVMTLNEHVA 354
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ + +K G++ LLD+AR ++ + AN EL L L F+
Sbjct: 355 YQSKPLDLRNQRIYCVKAGVNSLLDVARHAYKE--------ANADATELCDMVLDLKFDA 406
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
+ +Y+ IP + G LP+ FI V + N + C TL+L LN + + E ++ +
Sbjct: 407 ARQYYICIPATE-PGPLPNIFINVYRKRNCVECQTLDLVKLNQKITDSHSEVINMSDQTI 465
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L+ + +VS L ++E + +LDM+ +FA + Y RP T+ LAI GR
Sbjct: 466 QDLLRDVCTEVSGLFRVSEAIAMLDMLA-AFAQLATNH---EYIRPELTDT--LAIKAGR 519
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HPI E IH+ FIPN+ + + ++TG NMSGKSTY++ + L+ ++AQIGC++PA +
Sbjct: 520 HPIREQIHSSKFIPNDAYATPQTRFQVITGCNMSGKSTYIRTLALVTVMAQIGCFIPAQY 579
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
++ + ++F R+ T D+L +N STF EM+E AF+++N+ RS++++DELGR TS++DG
Sbjct: 580 ASFPISHQLFARVATSDDLNANVSTFAAEMREMAFILRNIQPRSMVIIDELGRGTSTTDG 639
Query: 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN--RLDFKFQLK 537
AIA + E L+S A F +H L+++ V LH I ++ ++ ++++
Sbjct: 640 LAIAIALAEALISSNALVWFVTHFHELAQILAERSGVINLHLAAEISSDASKMTMQYRIA 699
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR----MEINCLQYKQIQMLY 593
+GP YGL+LA++A LP V+ A S++ + + +R + Q + ++L
Sbjct: 700 EGPVPDRRYGLVLAKLADLPPAVLNKAHSVSEAMDQLAKRRNSPSRAVAIAQKR--KLLL 757
Query: 594 HAAQRLICLKYSNQDEESIRHALQNLKESFI 624
++L + D S+R L L++ F+
Sbjct: 758 SLREQLFLARDGTMDNASLRALLIKLQDDFV 788
>gi|242015360|ref|XP_002428327.1| DNA mismatch repair protein, putative [Pediculus humanus corporis]
gi|212512923|gb|EEB15589.1| DNA mismatch repair protein, putative [Pediculus humanus corporis]
Length = 704
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 188/566 (33%), Positives = 310/566 (54%), Gaps = 32/566 (5%)
Query: 26 NKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFL 85
N RSL ++ T GTRLLRAN+LQP + I RL+C+DEL+SN+ F GL +
Sbjct: 157 NMNRSLMGVVNHCHTKAGTRLLRANILQPYFSLSKIQNRLNCVDELVSNQIFFSGLEAAI 216
Query: 86 RKFPKETDRVLCHFC-FKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLK 144
R F + L + C + P++ D + ++ + + LKT L+ALP L L+
Sbjct: 217 RNFTNFEE--LLNLCMYSPRQ--------DGLRIAEYQLKYALHLKTVLEALPKLTASLE 266
Query: 145 DAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLL 204
+S + + ++ +Y I R+ E + E+ + + CFAIK G++ LL
Sbjct: 267 VGKSEYFKKALKEL-QDYRYDKILCRVIETVSENTRSVKNSIASHLHGCFAIKSGVNSLL 325
Query: 205 DIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLS--IP---HKDIQGKLPS 259
D+A++++C+ + + + R+ LP LK+ F++ GF++ +P H LP
Sbjct: 326 DLAKKTYCEIVQEITDYVATLRDNYNLP-LKVAFSSNNGFHIQCILPPSEHSMKPTNLPK 384
Query: 260 TFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAE 319
FI V K + T +L +L+ R++ E + T + +++ IRED+ L L+E
Sbjct: 385 EFILVKKSKTKFNFYTSKLVALDQRSQHVLNEIKLMTNAIVFEMLNDIREDIGCLFNLSE 444
Query: 320 VLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHN-DFIPNNIFI 378
++ LD+++ SFA S K Y +P F L + RHPIL+SI + + PN++
Sbjct: 445 IIAELDVVI-SFARISSVK---NYVKPKF--GNELDLKESRHPILDSIQDGNVTPNDVMA 498
Query: 379 SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNL 438
N I+TGPN SGKS Y++Q+ L+ I+AQIGC+VPA ++ + +++IF+R+G D+L
Sbjct: 499 KPGKNFTILTGPNQSGKSIYVRQIALLQIMAQIGCFVPAKSASFKPMNKIFSRLGFDDDL 558
Query: 439 ESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTI 498
E+N+ST + EM+E ++M+N++ S+I++DEL R TS ++G +A++ CE LL +A+
Sbjct: 559 ETNASTLIAEMREIEYIMRNMTSSSMIIIDELCRGTSVNEGTNLAFAICEQLLDSQAFIF 618
Query: 499 FASHMENLSELATIYPNVKILHFYVVIRNNRLD------FKFQLKDGPRHVPHYGLLLAE 552
+H E L++L +YP V HF + NN + F LK GP + YGL + E
Sbjct: 619 CTTHYELLTKLEEMYPTVTNYHFEMEFENNEKNDTLTTTFTHVLKTGPSNAKGYGLQVTE 678
Query: 553 -VAGLPSTVIETARSITSRITKKEVK 577
+ P V E A+ I+ + K K
Sbjct: 679 FLTSFPKEVYEKAKEISLNLYKAPKK 704
>gi|146322351|ref|XP_749950.2| DNA mismatch repair protein Msh4 [Aspergillus fumigatus Af293]
gi|129556974|gb|EAL87912.2| DNA mismatch repair protein Msh4, putative [Aspergillus fumigatus
Af293]
Length = 840
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 188/581 (32%), Positives = 331/581 (56%), Gaps = 26/581 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M++D +++ +LE+I+ L +A + SL +L T T G RLLRAN+LQP +
Sbjct: 196 MSMDLSTIVSLELIQNLQNA-----KSEDSLLGLLNETLTPMGARLLRANILQPCTEKSK 250
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D +++L + E +F + Q L+ F + D+VL P K T + ++
Sbjct: 251 LLARYDAVEDLSTKEDMFISVRQALKGFI-DADKVLTSLILAPTKRTFQYVEQSG----- 304
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+++I+LKT + ++ + K L AQS LL I R +C + +I + I E ++E V
Sbjct: 305 ---NNVIMLKTYVSSINSIYKALATAQSSLLMTI-RELCGPAGHRAIEQLIEETLNEHVT 360
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ + ++ G++ LLD+AR+++ + + +L K E L L L ++
Sbjct: 361 YQTKPLDLRNQRIYCVRAGVNSLLDVARQTYKEANVDAADLVAKVSESHNL-TLDLKLDS 419
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
+ +Y+S+ +++ L FI + + N I C TL+L LN + A E ++ +
Sbjct: 420 ARQYYISVSASEVK-TLSGIFINIYRRKNRIECQTLDLVKLNQKIMDAHNEVINMSDQTI 478
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
++L++ + ++SVL ++E + +LDM+ +FA + + Y RP T+ LAI GR
Sbjct: 479 QSLINDVCSEISVLFKVSEAIAMLDMLA-AFAELAT---CNEYIRPELTD--VLAIKSGR 532
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HPI E IH FIPN+ + ++ + I+TG NMSGKSTY++ + L+ I+AQIGC+VPA +
Sbjct: 533 HPIREKIHTKKFIPNDAYATQQSRFQIITGSNMSGKSTYIRSLALMTIMAQIGCFVPAEY 592
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
++ V+ ++F R+ T D+LE+N STF EM+E AF+++N+ RS++++DELGR TS++DG
Sbjct: 593 ASFPVMHQLFARVSTSDDLEANVSTFAAEMREMAFILRNIEPRSIVIVDELGRGTSTTDG 652
Query: 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN--RLDFKFQLK 537
AIA + E L+ A F +H +L+ + V LH I + ++ +++
Sbjct: 653 LAIAIAIAEALIESHALVWFVTHFRDLALILAERNGVVSLHLAAEISPDISQMVMLYKIA 712
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
+GP YGL +A++ LP V+E A++++ ++ + +R
Sbjct: 713 EGPDTTQFYGLAVAKLVDLPPGVLERAQTVSEKLNRIAQRR 753
>gi|342879917|gb|EGU81149.1| hypothetical protein FOXB_08299 [Fusarium oxysporum Fo5176]
Length = 961
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 204/635 (32%), Positives = 341/635 (53%), Gaps = 41/635 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++++LEI++ L + S K SLF +L T T G+R+LR+N+LQP +
Sbjct: 348 MMIDISAIQSLEIMQNLRN-----SKSKDSLFGLLNHTCTPMGSRMLRSNMLQPPTRPDL 402
Query: 61 -INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I R D LDEL +NE++F + + FC + DV ++
Sbjct: 403 FITPRYDALDELTTNEEMFLEIRK-------------GKFCSDSLIIVPTNADVQQVEEQ 449
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
I+ ++++K+ L+++P L L A S LL + R +C E + I + I+ DV
Sbjct: 450 ---INQVLMIKSFLESIPELHTALGPANSVLLTKV-RELCRPEITSHSLNTIRQTIEADV 505
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ R Q+ FA+K GI+G+LD+AR+++ + +E +H + E L + L ++
Sbjct: 506 TYMESALDLRNQRTFAVKAGINGMLDVARQTYKELTEDIHQHIDVLNEVHGL-DANLRYD 564
Query: 240 NRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N + ++L + D + LP I VV+ + I C TL+L LN+R + E IR++
Sbjct: 565 NGRKYWLRLRAADFDDRPLPDLLINVVRKKDKIECQTLDLVKLNLRLSDTSNEVVIRSDK 624
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
++ L+ +R DV L + E + L+DMI +SFA +T+ Y +P + LA+
Sbjct: 625 VVQDLLKELRSDVPHLFRVCESVALVDMI-SSFAQLATTR---DYVKPDLSTT--LALKS 678
Query: 359 GRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHP+L+ +++ F+PN+ + +E IVTG NMSGKSTY++ V L+ I+AQIG +VPA
Sbjct: 679 ARHPVLDKTMNGSFVPNDYYSTEQYCFHIVTGCNMSGKSTYIRAVALLQIMAQIGSFVPA 738
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++ ++ IF R+ DN+ESN STF EM+E +F+++N+ ++SL V+DELGRATS+
Sbjct: 739 EYAAFSIIHSIFARVSLDDNIESNLSTFSVEMREMSFILRNIDDKSLAVIDELGRATSNR 798
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR-----LDF 532
DG AIA + E L+ +A FA+H +L+++ P + LH +
Sbjct: 799 DGLAIAIAMSEALIQSRASVWFATHYIDLTKVLADRPGILNLHLAATTSTTEDGLPHITM 858
Query: 533 KFQLKDGP-RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE--VKRMEINCLQYKQI 589
++ G R HYG+ LA GLP + I+ A + I ++ KR + +
Sbjct: 859 LYKATSGATRGEEHYGINLARAIGLPQSFIDKAEEVAKDIRRRRETTKRSSESTRLVARR 918
Query: 590 QMLYHAAQRLICLKYSNQDEESIRHALQNLKESFI 624
+++ + L K S +E++ LQ+L+E F+
Sbjct: 919 KLILNLQDALRRAKDSGS-KEALPGYLQHLQEDFV 952
>gi|315045261|ref|XP_003172006.1| DNA mismatch repair protein mutS [Arthroderma gypseum CBS 118893]
gi|311344349|gb|EFR03552.1| DNA mismatch repair protein mutS [Arthroderma gypseum CBS 118893]
Length = 876
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 191/576 (33%), Positives = 321/576 (55%), Gaps = 48/576 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ +LE+I+ L +A K LF +L T T G RLLR+N+LQP ++
Sbjct: 201 MMIDLATIVSLELIQNLQNA-----KSKDCLFGILNETLTPMGARLLRSNILQPSTEVSK 255
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+N R D ++EL SNE++FF + Q L+ F ++DRVL KK + + A++S
Sbjct: 256 LNLRYDAVEELSSNEEMFFAVRQALKSF-LDSDRVLAALTVVLKKPS-----ISYAEQS- 308
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I++II+LKT + + R + E A I+ + E +++DV
Sbjct: 309 --INNIIMLKTFISCI-------------------RPIYE----ALIQTLLSETLNDDVR 343
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ R + +A+K G++ LLD+AR+++ + ++ V L+ + E +P L L F +
Sbjct: 344 YQSSALDLRNHRTYAVKAGVNNLLDVARQTYMEANDDVAELSARLSAEHGIP-LDLRFES 402
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ +Y + D+QG LP FI V + + TL+L +N + + E ++
Sbjct: 403 GRHYYFRVRSTDLQGVVLPDIFINVYRKKAFVEFQTLDLVKMNQKITDSHNEVISMSDRS 462
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ L+D +R +S L ++E + +LDMI +FA+ +T+ Y RP T LAI G
Sbjct: 463 IQELIDDVRTMISNLFRISEAIAMLDMIA-AFAYIQATQG---YVRPEITP--ILAIKAG 516
Query: 360 RHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E IH+ +IPN+I+ S + I+TG NMSGKSTY++ + L+ ++AQIG VPA
Sbjct: 517 RHPIREKIHSTKYIPNDIYASPQSRFQIITGCNMSGKSTYIRSLALMAVMAQIGSSVPAQ 576
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ +V ++F R+ DN +N STF TEM+E A++++N+ +S++++DELGR T+S+D
Sbjct: 577 YASFPIVHQLFARVSADDNQITNVSTFSTEMREMAYILRNIDAKSMVIVDELGRGTASTD 636
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQL 536
G AI+ + E L+ A F +H +L+ + V LH V + ++++ +++
Sbjct: 637 GLAISIAIAEALMETHALVWFTTHFHDLARIMEHRSGVINLHLAVDMSEPQSKINMLYKI 696
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRIT 572
DG HYGL LA + LP +IE A ++ R+T
Sbjct: 697 ADGYVREQHYGLALARIFSLPPYLIEVADEVSHRLT 732
>gi|328769979|gb|EGF80022.1| hypothetical protein BATDEDRAFT_25630 [Batrachochytrium
dendrobatidis JAM81]
Length = 754
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 206/586 (35%), Positives = 311/586 (53%), Gaps = 68/586 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID + RNLE++ L K SLF L TKT G RLLR ++LQPL
Sbjct: 205 MMIDPATARNLELVYNLRD-----RQSKNSLFGALNKTKTSMGARLLRISVLQPL----- 254
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
F L FL + D ++ +K T K S+
Sbjct: 255 ------------------FVLKGFL-----DIDHLISSLIQVNRKQT--------IKYSE 283
Query: 121 TLISSIILLK-TALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
I++II+LK L +PL+ + +A + L + I +VI+++V
Sbjct: 284 QAINNIIILKHILLQTMPLVTCL--NAPTSALLAALELALNQPSINELILTIDKVINKNV 341
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ R Q+CFA++ G +GLLD+AR++F + + VH+L Y LP +KL +
Sbjct: 342 KFEKSAIGLRNQRCFAVRSGFNGLLDVARQTFKEATADVHDLVKLYSNTYNLP-IKLVYT 400
Query: 240 NRQGFYLSIPHK--DIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+ + + +Q K LP+ FI K I ++L+L S N R + + E Y+
Sbjct: 401 PTSQYQMQLGEDFISVQNKRLPAEFINSTKKRKQITFTSLKLMSQNDRIQESLTEVYLMG 460
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ + L IRE +S+L L+E L LLDMIV+ A S + RP FT LAI
Sbjct: 461 DKIMFDLTAQIREYLSMLYQLSETLALLDMIVSFAAVAKSWNGI----RPEFTNT--LAI 514
Query: 357 DGGRHPILESIHN---DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
GRHPIL S+ N +PN++F A+ + I+TGPNMSGK+TYL+Q+ L+ ILAQIG
Sbjct: 515 KNGRHPILISMGNTAIKVVPNDVFADSASRLQIITGPNMSGKTTYLRQIALLSILAQIGT 574
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + ++R+VD +F+R+GT D+ E+NSSTFM EM+E AF++ NV+E SL+++DELGR
Sbjct: 575 FVPAEYISVRLVDCLFSRIGTDDSFEANSSTFMCEMREAAFILSNVTESSLVIIDELGRG 634
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSEL--ATIYPNVKILHFY---VVIRN 527
TS+SDGF + ++ CE LL + A+ +H E L+++ V +LH + +V RN
Sbjct: 635 TSTSDGFGVCFAICEQLLNTTNAFVFLVTHFEQLAKIFVGADTTGVVVLHLHASTIVARN 694
Query: 528 NRLD-----FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSIT 568
LD F F++K G + YGLL A+ G + ++ A+ ++
Sbjct: 695 QDLDSIGMSFSFKVKPGVSTINGYGLLAAQAVGFNADILSCAKKVS 740
>gi|326438067|gb|EGD83637.1| hypothetical protein PTSG_04245 [Salpingoeca sp. ATCC 50818]
Length = 731
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 180/519 (34%), Positives = 297/519 (57%), Gaps = 29/519 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DAT+V++LE+++ + + SN SLF +L TKT+ G R LRA LLQP D+ TI
Sbjct: 237 MDATTVKHLELLQSIRNP----SNTAHSLFGVLDHTKTVSGGRFLRAELLQPPSDVMTIQ 292
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
TR + ++ L++N+ F L L +F ++ + ++ H C + + +A ++
Sbjct: 293 TRQEAVEFLLNNQADFEQLGDLLSRF-EDMESLITH-CIQ-------IPHAQDATTAERR 343
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I S++ LK ++ +P L + L + S L + + ++ +A+I I V E+
Sbjct: 344 IGSLLRLKHNMELVPQLCQHLSKSSS-SLLGTFAATLQDGSFAAINDAIVRVFHEEARVD 402
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ +AI+ GI G+LD+ARR++ + + L + E ++ +L L + ++
Sbjct: 403 QGALNRRTQHIYAIREGIHGMLDVARRTYGEAVADITELCQQLSERYEV-DLALEYTAQR 461
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
GF+ K +LP+ F QV K T EL +N R + + E +
Sbjct: 462 GFFFITQSK---AQLPAAFKQVSKSRQRTGLVTQELQQMNTRIRESMLEIFTLANTICAD 518
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMI--VNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
L IR + L L E++ + D + + +FA + T RY RP F++ LA+ GG
Sbjct: 519 LFAEIRAHLGSLYRLTEIIAMTDFLQSLATFASFVPT----RYVRPEFSDT--LAVKGGC 572
Query: 361 HPILESIH--NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPIL S++ + +PN+ F S+ + +++TGPNMSGKS YL+QV L+ +LAQ+G +VPA
Sbjct: 573 HPILMSLNRRQELVPNDTFASKETSFIVITGPNMSGKSVYLRQVALLQVLAQLGSFVPAE 632
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
F+ RV D+IFTR+G D+ E+NSSTFM E +E F+++N +E+SLI++DELGR TS +
Sbjct: 633 FACFRVCDQIFTRIGNEDSFETNSSTFMVECQELNFILRNATEQSLIIIDELGRGTSPEE 692
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVK 517
G + ++ CE+++ L+A+T FA+H L L IYP+V+
Sbjct: 693 GLGLCFAACEYMIQLQAFTFFATHFSELCRL-DIYPSVE 730
>gi|302834790|ref|XP_002948957.1| hypothetical protein VOLCADRAFT_89345 [Volvox carteri f.
nagariensis]
gi|300265702|gb|EFJ49892.1| hypothetical protein VOLCADRAFT_89345 [Volvox carteri f.
nagariensis]
Length = 837
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 198/591 (33%), Positives = 309/591 (52%), Gaps = 65/591 (10%)
Query: 40 TIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHF 99
T G RLLR++LLQPL D+ T+N R D ++EL+ + L F L Q L PK+ D+ +C+
Sbjct: 179 TAAGMRLLRSSLLQPLADVGTLNMRYDTIEELIEEDTLAFDLGQVLALLPKDLDK-MCYS 237
Query: 100 CFKPKKVTSKVLDV----------DNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSF 149
D + L+ S++LL+ L + LA L+ A+S
Sbjct: 238 LAAAGGSGPPGGGGAGAFKSAAGNDPGRAIGGLVQSLLLLRDILAVMEPLANTLQPARSP 297
Query: 150 LLANIYRSVCENEKYASIRKRIGEVIDEDVLHARV---PFVARTQQCFAIK--------- 197
LL I R+ C ++R R+ EV+DE+ A F++R QQCFA++
Sbjct: 298 LLTAI-RTNCTAPGLLALRHRVDEVLDEEATGAAARGSQFMSRIQQCFAVRTAAADACPP 356
Query: 198 GGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKL 257
G GLL++AR S C +E+VH L + R + S ++G +
Sbjct: 357 GPGGGLLEMARGSLCRLTESVHALGARCRTAAARAS------------TSPCRLTLEGAV 404
Query: 258 PSTFIQVVKHG-NNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTL 316
+ + + + G + +T EL +LN R + A +C + T LE++V + L
Sbjct: 405 AAALMVLERRGPGTLLLTTHELNALNARLRDATFDCLLLTRQLLESVVSEAFGQLGALQR 464
Query: 317 LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFI---- 372
LA+ L LLD++V A ++ P+ + RP GPLAI GRHP+L + F+
Sbjct: 465 LADSLALLDLMVG-LADVVANGPMGQCCRPQLQLGGPLAIVQGRHPLLAA--RSFLTGGG 521
Query: 373 --------PNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRV 424
N++F+S A + I+TGPNMSGKSTYL QV L+V++AQ GC+VPA F +
Sbjct: 522 SGGGGRVQANDVFVSSTAPLHIITGPNMSGKSTYLHQVGLLVLMAQAGCWVPAQFMALSP 581
Query: 425 VDRIFTRMGTV------------DNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+ R+ D+LES SS+F+ EM++ A V+ + + RSL+++DELGR
Sbjct: 582 FTALLGRLSFGGGGGGGGLMGPEDDLESGSSSFLAEMQDAAAVLASATPRSLVLLDELGR 641
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
ATS++DG +AW+ CE L++ + T+ A+H L ELA +YP ++ V LDF
Sbjct: 642 ATSTADGVGLAWAICEELMTRGSATLLATHFPQLGELAVLYPQARLWKLQVDTSAGSLDF 701
Query: 533 KFQLKDGPR-HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN 582
++ L+ HYGL+LAE AGLP++V+ AR + + + E +R+E++
Sbjct: 702 RWLLQPAAALDYCHYGLMLAEAAGLPTSVVVEARRVAEMLEEVERRRLEVS 752
>gi|170584586|ref|XP_001897078.1| MutS domain III family protein [Brugia malayi]
gi|158595518|gb|EDP34065.1| MutS domain III family protein [Brugia malayi]
Length = 820
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 186/579 (32%), Positives = 318/579 (54%), Gaps = 34/579 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID ++RN+E++E +H RSLF +L T T GG RLLR++LLQP D+ I
Sbjct: 194 IDVNTMRNVEVVERIH---LKQKTLGRSLFSVLNTCLTSGGVRLLRSSLLQPSADLSMIE 250
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF-KPKKVTSKVLDVDNAKKSQT 121
TRLD ++EL+SN+ F L + + R++ C+ + + T +++ +
Sbjct: 251 TRLDAIEELISNQPKFDRLRAIIAGI-SDIYRLITVCCYLQNQNETVRIV--------EH 301
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV-L 180
I+ I+ L+ L + L LK++++ L Y + ++E++ SI + E ++ +
Sbjct: 302 RITQILNLQQTLHLIKPLKDALKNSRAHLFRLCYNHL-DDERFESIMNILDEKLNTTCKV 360
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEL-KLPNLKLPFN 239
R R ++C+AI+ GID ++D+ R+++ E + + K E+ ++ KL +
Sbjct: 361 GERSSLALRQKRCYAIRDGIDQMIDVMRKAY---EELLRDTREKGNEDASEISEAKLIYT 417
Query: 240 NRQGFYLSIPHKD--IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+GF+ IP D + KLPS FI +V++ ++ C+T L N R E IR+
Sbjct: 418 ASRGFHFCIPCLDPVARIKLPSQFIDMVRNRTSVSCTTRSLLRYNERIDEVVNEITIRSN 477
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
+ + L++ IR + L E + ++D I + + + V RP F+ + + I
Sbjct: 478 VIVVELLNKIRLMIPCLYHAIEAISMVDFISSLAVYAMKIPSV----RPSFSPSMSMIIK 533
Query: 358 GGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP+L+ +FIPN++++S + + I+TGPNM+GKSTYL+Q+CL+ +LAQ G +VPA
Sbjct: 534 RGRHPLLDLASENFIPNDVYLSPESRINIITGPNMAGKSTYLKQICLLHVLAQTGSFVPA 593
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ ++ RIF+R+G D+L +N S F EM E A ++ SL+++DEL +T+
Sbjct: 594 EMAAFPILTRIFSRIGHNDDLTANLSAFAVEMSEMAPILSTADSLSLVLIDELACSTAYD 653
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHF---YVVIRNN------ 528
+G +I ++ CE LL KAY +FA+H +L+ LAT+YP+V+ HF V I+ +
Sbjct: 654 EGLSICFAICEELLRRKAYVVFATHYLDLASLATMYPSVENFHFSANTVKIKQDDDSEVE 713
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+L QL GP + P Y LA++ P V+ A ++
Sbjct: 714 KLHCSHQLYTGPYNGPLYAFNLADLTTFPREVLTEAHTL 752
>gi|317026134|ref|XP_001389050.2| DNA mismatch repair protein Msh4 [Aspergillus niger CBS 513.88]
Length = 902
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 185/628 (29%), Positives = 346/628 (55%), Gaps = 46/628 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+ID +++ +LE+I+ +H+A K SL+ +L T T G RLLRAN+LQP +
Sbjct: 195 MSIDLSTIVSLELIQNIHNA-----KSKDSLYGLLNETLTPMGARLLRANILQPSTEESK 249
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D +++L + E +F + Q L+ F + D+VL P K + A++S
Sbjct: 250 LQARYDAVEDLSTKEDMFVSVRQALKGF-VDADKVLTSLILVPNKRA-----LQYAEQS- 302
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++++I++KT + ++ +S+C + ++++ I E ++E V
Sbjct: 303 --VNNVIMVKTYVGSI-------------------KSLCAPAGHRAVQQMIEETLNEHVT 341
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ + ++ G++ LLD+AR+++ + + +L + E + L L F+
Sbjct: 342 YQTRPLDLRNQRIYCVRAGVNSLLDVARQTYKEANTDAADLVAELAETYSIA-LDLKFDR 400
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
+ +Y+S+ ++ LP FI V + N I C TL+L LN + A E ++ +
Sbjct: 401 ARQYYISLSATTVES-LPDVFINVFRKKNRIECQTLDLVKLNQKITDAHNEVINMSDETV 459
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L+ I ++S L ++E + +LD I+ +FA ++ + Y RP T+ LAI GR
Sbjct: 460 QGLIHNICSEISGLFKVSEAIAILD-ILTAFAQLATS---NDYIRPELTDT--LAIKSGR 513
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HPI E IH FIPN+ + ++ + I+TG NMSGKSTY++ + L+ ++AQIGC++PA +
Sbjct: 514 HPIREKIHTKKFIPNDAYATQQSRFQIITGCNMSGKSTYIRTLALMTVMAQIGCFIPAEY 573
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
++ +V ++F R+ T D+LE+N STF EM+E AF+++N+ RS++++DELGR TS++DG
Sbjct: 574 ASFPIVHQLFARVSTSDDLEANISTFAAEMREMAFILRNIEPRSMVIVDELGRGTSTTDG 633
Query: 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN--RLDFKFQLK 537
AIA + E L+ A F +H +L+ + V LH + + ++ +++
Sbjct: 634 LAIAIAIAEALVESHALVWFVTHFRDLALIMGERNGVVSLHLTAEVSPDASKMTMLYKIA 693
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN--CLQYKQIQMLYHA 595
+G YGL LA++ LP V+ET + ++ ++ + +R + ++ ++
Sbjct: 694 EGIDTNQFYGLALAKLVDLPPGVLETTQQVSEKLNQLAKRRHSKSRALAVTRRRNLILSL 753
Query: 596 AQRLICLKYSNQDEESIRHALQNLKESF 623
++L+ ++ + E++R L+ L++ F
Sbjct: 754 KEQLLLVRNRTMEGEALRKWLKRLQDDF 781
>gi|347829729|emb|CCD45426.1| similar to DNA mismatch repair protein mutS [Botryotinia
fuckeliana]
Length = 853
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 178/580 (30%), Positives = 312/580 (53%), Gaps = 43/580 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++++LE+I+ L +A K LF ++ T T G+RLLR+N+LQP
Sbjct: 221 MMIDLATIQSLELIQNLQNA-----KSKDCLFGLMNETLTPMGSRLLRSNILQPSTQSTL 275
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D L EL N+ +F Q L+ P + +++L P ++ S+
Sbjct: 276 IAARYDALAELSENDDMFLQTRQALKLIP-DIEKLLTCLIIIP--------NLPGIWNSE 326
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I++I++LK+ ++ + + L A+S LL I R+ C E S + I EVI+EDV
Sbjct: 327 QDINNILMLKSFAQSISPVFESLSGARSELLVQI-RNNCRTEAVNSTIQFIDEVINEDVT 385
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + P R Q+ +A+K G+ G LD+AR++F + +E VH + + ++ + F+N
Sbjct: 386 YQKTPLDLRNQRTYAVKAGVSGFLDVARQTFKEATEDVHQHVTEIHQNYEIQG-ETRFDN 444
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ +YL + G+ +P I + + C TL+L LN + + + E + ++
Sbjct: 445 LRKYYLRFSENEFNGRAIPDVLINRFRRKGYLECQTLDLIKLNQKIEDSHIEVILGSDKT 504
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ L++ +R ++ L + E + +LDM+ SF ++ + D Y H
Sbjct: 505 IQELLENVRTEIPNLFKVCESIAMLDMMT-SFGQLVTNQ--DCYVPSH------------ 549
Query: 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
F+PN+ + ++ + I+TG NMSGKSTY++ + L+ ++AQ+GC+VPA +
Sbjct: 550 ----------KFVPNDYYATQQSRFQIITGCNMSGKSTYIRGIALMSVMAQVGCFVPASY 599
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
++ ++ ++F R+ D++E+N STF +EM+ETAF+++N+ E+SL ++DELGR TS+ DG
Sbjct: 600 ASFPMIHQLFARVSMDDSIEANVSTFASEMRETAFILRNIDEKSLAIIDELGRGTSTRDG 659
Query: 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-NRLDFKFQLKD 538
AIA S E L +A FA+H + L+++ + P V++ H V +R+ + ++L
Sbjct: 660 LAIALSIAEALSESRALIWFATHFKELAQIMSERPGVRVYHLSVDMRDPTTMTMLYKLDQ 719
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
G HYGL LA V LP VI A ++ + + R
Sbjct: 720 GCVKEQHYGLALARVVDLPPKVITVAEKVSKTLIAQAAAR 759
>gi|322705067|gb|EFY96656.1| DNA mismatch repair protein Msh4, putative [Metarhizium anisopliae
ARSEF 23]
Length = 721
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 194/609 (31%), Positives = 325/609 (53%), Gaps = 51/609 (8%)
Query: 28 KRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET-INTRLDCLDELMSNEQLFFGLSQFLR 86
K SLF +L TKT G+R+LR N+LQP T I R + L+EL S E++F + +
Sbjct: 143 KDSLFGLLNQTKTPMGSRMLRNNILQPPTKYSTFIRPRYEALEELTSEEEMFHAVRK--G 200
Query: 87 KFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDA 146
FP D + +++K + ++ I+ +IL+KT L+++P L + L +
Sbjct: 201 NFPNPEDMI---------TISTK----SSITHAEEQINHVILIKTFLESVPELYQALAEC 247
Query: 147 QSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDI 206
S LL I R +C I RI +V++ DV + P R Q+ +A+K GI+ +LD+
Sbjct: 248 NSALLLKI-RDICHPNTTDPILSRIHQVVEADVTYMTSPLDMRNQRTYAVKAGINDMLDV 306
Query: 207 ARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDI-QGKLPSTFIQVV 265
AR+++ + + +H N + + + L + F++ + ++L I D+ + LP FI VV
Sbjct: 307 ARQAYKELTNDIHLHVNDIQAQHGI-QLTVKFDHGRKYWLRIKSGDLNKDTLPQVFINVV 365
Query: 266 KHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLD 325
K ++I C TL L LN R + E +R++ ++ L+ +RE L + E + L+D
Sbjct: 366 KKKDHIQCQTLSLVKLNFRLSETSNEIIMRSDKVIQELILDLRESSPQLFRVCESVALVD 425
Query: 326 MIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESI-HNDFIPNNIFISEAANM 384
MI SFAH + + Y RP + LA+ RHPIL++I F+PN+ + +
Sbjct: 426 MIA-SFAHLATIR---DYVRPEILDT--LALKAARHPILDNIMFEGFVPNDYYATPQHRF 479
Query: 385 VIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSST 444
IVTG NM+GK+TY++ + L+ I+AQIGC+VPA +++ V+ +F R+ DNLE+N ST
Sbjct: 480 HIVTGCNMAGKTTYIRAIALLQIMAQIGCFVPAEYASFPVMHNLFARVSLTDNLEANLST 539
Query: 445 FMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHME 504
+ EM+E AF+++NV+ +SL+++DELGR TS DG A+A + E L+ A+ FA+H
Sbjct: 540 YSLEMREMAFILRNVNGKSLVIIDELGRGTSPRDGLAMAIAMSEALIQSGAFVWFATHFV 599
Query: 505 NLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHV-PHYGLLLAEVAGLPSTVIET 563
+L+ + P+ RL ++ K G HYG+ LA G P +
Sbjct: 600 DLTRVLEDRPDEG---------EPRLVMLYKAKSGVVDTNQHYGIDLARAIGFPEPFTKR 650
Query: 564 ARSITSRITKK--------EVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHA 615
A + + ++ E +R+ + K + L+ A ++ Y +E++
Sbjct: 651 AEEVAKALRQQREASLRDSESRRL---VARRKLVLSLHEALKQ----AYEYGSDEALPGY 703
Query: 616 LQNLKESFI 624
L++L+E FI
Sbjct: 704 LKHLQEDFI 712
>gi|392572008|gb|EIW65180.1| hypothetical protein TRAVEDRAFT_42560 [Trametes versicolor
FP-101664 SS1]
Length = 858
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 192/612 (31%), Positives = 320/612 (52%), Gaps = 52/612 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ + RNLE++ + T SLF +L T T G RLLR N+L P+
Sbjct: 189 MLIDSGTARNLELVGNM-----STRKSAHSLFGLLNHTFTPMGARLLRVNILAPITVKSA 243
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
+ RLD ++EL+ E F + ++ K + D+++ +S+V + +AK +
Sbjct: 244 LEARLDVVEELIQTEDRFNEVKNAMKPLSKLDLDKLISSLA------SSEVRETSSAKSA 297
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ ++ L++ + +LP LAK L +++ LL I + +E+ I + + ++++
Sbjct: 298 SARVAQMLNLRSIVQSLPRLAKALDGSRAQLL-QIIAEMISDERLYKIDELVRASLNDEA 356
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
A+ A + +A+K + LLD+AR ++ + ++ L + EE LP + +
Sbjct: 357 APAKGGLNAVNARVYAVKANYNRLLDVARETYKENVGDIYALRARLAEEHDLPLTLVYRD 416
Query: 240 NRQGFYLSIPHKDIQ---GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+ GF ++ D+ G+LP FI V + +T+EL N R K A E I +
Sbjct: 417 SDAGFVFALKKTDLSDAGGELPRGFIDVTAQKGRVTFATIELKKRNARMKDALDETLILS 476
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ ++ L D I D+ L +E + LLD ++ SFAH + Y RP FT G LAI
Sbjct: 477 DKIIQDLTDDIVVDIGALYKASEAVALLD-VLWSFAHA---SILRNYVRPEFT--GTLAI 530
Query: 357 DGGRHPILESIHND--FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GGRHP+LES+ + +PN+++ EA++ IV GPNMSGKSTYL+Q+ L+ ++A GC+
Sbjct: 531 KGGRHPVLESVQSAGAMVPNDVYCCEASSFQIVQGPNMSGKSTYLKQIALLTVMAMCGCF 590
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + + D + TR+ D+LE + STF EM TA ++ + SL+++DE+GR T
Sbjct: 591 VPAEYGSFHIQDALLTRLSNDDDLEKSLSTFANEMASTAMILGLATYDSLVLIDEVGRGT 650
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR----- 529
S +G AI+ + E L+ LK + FA+H L+ + P+V LH V + +R
Sbjct: 651 SVREGVAISHAIAEELIRLKPFVFFATHFSELTTTLSRQPSVVNLHLSV--QKSRPTASK 708
Query: 530 --LDFKFQLKDG-PRHVPHY------------------GLLLAEVAGLPSTVIETARSIT 568
+ F +++ DG P HY GL LA +A LP+ V+ AR +
Sbjct: 709 FGITFHYKIIDGAPEVFDHYGKASSRSSHYTLAVLILVGLDLARLADLPAPVVTEARRVA 768
Query: 569 SRITKKEVKRME 580
+T++E + ME
Sbjct: 769 ELLTEQEERDME 780
>gi|312076848|ref|XP_003141044.1| hypothetical protein LOAG_05459 [Loa loa]
gi|307763793|gb|EFO23027.1| hypothetical protein LOAG_05459 [Loa loa]
Length = 817
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 184/583 (31%), Positives = 318/583 (54%), Gaps = 34/583 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID ++RN+E++E +H RSLF +L T T GG RLLR++LLQP D+ I
Sbjct: 191 IDVNTMRNVEVVERIH---LKQKTLGRSLFSVLNTCLTSGGVRLLRSSLLQPSADLSMIE 247
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF-KPKKVTSKVLDVDNAKKSQT 121
RLD ++EL++N+ F L + + +++ C+ + +K T +++ +
Sbjct: 248 ARLDAIEELINNQPKFDRLRAIIAG-ASDIYQLITVCCYLENQKETVRIV--------EH 298
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRI-GEVIDEDVL 180
I+ ++ L+ L + L LK++++ L Y S ++ ++ +I + G++ +
Sbjct: 299 RITQVLNLQQTLHLIKPLRDSLKNSKAHLFRLCY-SHLDDGRFENIMDILDGKLKTAGKI 357
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEL-KLPNLKLPFN 239
R R ++C+A++ G+D ++D+ R+++ E + + K E+ ++P KL +
Sbjct: 358 GERSALALRQKRCYAVRDGMDQMIDVMRKAY---EELLRDTREKSSEDASEIPEAKLIYT 414
Query: 240 NRQGFYLSIPHKD--IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+GF+ SIP D + KLPS FI V++ +I C+T L N R E IR+
Sbjct: 415 ASRGFHFSIPCPDPVAKIKLPSHFIDAVRNRASISCTTRSLLRYNERIDEVVNEITIRSN 474
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
+ + L++ IR + L E + ++D I + + + V RP F+ + + I
Sbjct: 475 VTVVELLNQIRLMIPCLYHAIEAISMVDFISCLATYAMKIQSV----RPSFSPSMSMIIK 530
Query: 358 GGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP+L+ +FIPN++++S + + I+TGPNM+GKSTYL+Q+CL+ +LAQ G +VPA
Sbjct: 531 QGRHPLLDLASENFIPNDVYLSPESRINIITGPNMAGKSTYLKQICLLHVLAQTGSFVPA 590
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ V+ RIF+R+G D+L +N S F EM E ++ SL+++DEL T+
Sbjct: 591 EMAVFPVLTRIFSRIGHNDDLTANLSAFAVEMSEMTAILHTADSLSLVLVDELACNTAHD 650
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHF---YVVIRNN------ 528
+G +I ++ CE LL KAY +FA+H NL+ LAT+YP V+ HF V I+ +
Sbjct: 651 EGLSICFAICEELLRRKAYVVFATHYLNLASLATMYPGVENFHFSTSTVKIKQDDGSEVE 710
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+L QL GP + P Y LA++ P V++ A ++ + +
Sbjct: 711 KLQCSHQLYTGPYNGPLYAFNLADLTTFPKEVLDEAHTLATSL 753
>gi|389750916|gb|EIM91989.1| hypothetical protein STEHIDRAFT_164363 [Stereum hirsutum FP-91666
SS1]
Length = 834
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 202/625 (32%), Positives = 327/625 (52%), Gaps = 56/625 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSL---FHMLKTTKTIGGTRLLRANLLQPLKD 57
M ID + RNLE++ G K+SL F L T T RLLRA +L P+
Sbjct: 210 MMIDPETARNLELV--------GNMTFKKSLHSLFGALNYTYTAMAGRLLRATILAPITV 261
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNA 116
I+ RLD ++EL+ +E +F + L++ K + D+++ + TS +A
Sbjct: 262 QSAIDARLDAVEELVQSEDMFGAVKDGLKQVNKLDFDKLISCLAASEARPTS------SA 315
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE---NEKYASIRKRIGE 173
K S I+ ++ L++ + +LP L K L+ ++S LL + +CE +E+ +I + +
Sbjct: 316 KASSNRIAQMLNLRSVVRSLPALQKALEGSRSPLL----QLICEMVSDERLQTIETLVCD 371
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
++ED ++ A + +A+K + LLD+AR ++ + ++ L E+ LP
Sbjct: 372 SLNEDATLSKTGIGAVNARVYAVKANRNPLLDVARETYKENIGDIYALHRALCEKHDLP- 430
Query: 234 LKLPFNNRQGFYLSIPHKDIQ--GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
+ L + GF +I D++ G LP F+ V +T+EL N R K A E
Sbjct: 431 MTLVYQE-GGFVFAIKKSDMESIGSLPWGFVNVSMQKGRWLFNTMELKKRNARMKDALDE 489
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
I ++ + LV I ++V L +E + L DM+ SFAH + YTRP FT
Sbjct: 490 TLILSDSTINGLVSEILQNVGALYKASEAVALQDMLW-SFAHV---SILRNYTRPEFT-- 543
Query: 352 GPLAIDGGRHPILESIH--NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
G LAI GRHPILE++ +PN+++ ++ + ++ GPNMSGKSTYL+Q+ L+ I+A
Sbjct: 544 GTLAIKAGRHPILETVQTAGTLVPNDVYCTDGSEFQMIQGPNMSGKSTYLKQIALLAIVA 603
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
GC+VPA +++ RV I TR+ D++E N STF TEM+ +A ++ +SL+++DE
Sbjct: 604 MCGCFVPAEYASFRVHHSILTRLSNDDDMEKNLSTFATEMESSAMILGLADSQSLVLIDE 663
Query: 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----V 524
LGR TS +G I+ + E L+ LK + FA+H LS + P+V LH V
Sbjct: 664 LGRGTSPREGIGISHAIAEVLIRLKCFVFFATHFHELSVTLSRQPSVVNLHLSVQKTRPS 723
Query: 525 IRNNRLDFKFQLKDGP-RHVPHYGLLLAEVAGLPSTVIETARSITSRI------------ 571
N + F++++ DG + HYGL LA +A LP V+ AR+ +R+
Sbjct: 724 ASNFGMTFQYKIVDGVLTDMDHYGLELARLADLPVDVLTEARTCATRLAELDSQRNQSSE 783
Query: 572 -TKKEVKRMEINCLQYKQIQMLYHA 595
TK V+R ++ L+ + Q L H+
Sbjct: 784 STKIAVRRKALHRLKAQLTQTLEHS 808
>gi|302505799|ref|XP_003014606.1| hypothetical protein ARB_07168 [Arthroderma benhamiae CBS 112371]
gi|291178427|gb|EFE34217.1| hypothetical protein ARB_07168 [Arthroderma benhamiae CBS 112371]
Length = 676
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 199/646 (30%), Positives = 328/646 (50%), Gaps = 90/646 (13%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID ++ +LE+I+ L +A K LF +L T T G RLLR+N+LQP ++ +N
Sbjct: 2 IDLATIVSLELIQNLQNA-----KSKDCLFGILNETLTPMGARLLRSNILQPSTEVSKLN 56
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
TR D ++EL SNE +FF L+ K F F A++S
Sbjct: 57 TRYDAVEELSSNEGMFFALTVIPTK---------PSFLF--------------AEQS--- 90
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I+LKT L C Y ++ + E +++DV +
Sbjct: 91 INNVIMLKTFL-------------------------CSPRNYDPVQTILKETLNDDVRYQ 125
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANK----------YR------ 226
R + +A+K G++ LLD+AR+++ + ++ V L ++ Y+
Sbjct: 126 TSALDLRNHRTYAVKAGVNNLLDVARQTYKEANDDVSELCSRLTGNVYIRRCYQRLRLTC 185
Query: 227 -EELKLPNLKLPFNNRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVR 284
EE +P L L F + + +Y + D+ G LP FI V + + TL+L +N +
Sbjct: 186 IEEYNIP-LDLRFESGRHYYFRVKSTDLPGVVLPDIFINVYRKKAYVEFQTLDLVKMNQK 244
Query: 285 NKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVN-SFAHTISTKPVDRY 343
+ E ++ ++ L+D R +S L ++E + LLDMI S+ HT+ Y
Sbjct: 245 ITDSHNEVVSMSDRSIQELIDNARSQISSLFRISEAVALLDMIAAFSYLHTMQD-----Y 299
Query: 344 TRPHFTENGPLAIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQV 402
RP T+ LAI GRHPI E IH+ +IPN+++ S + I+TG NMSGKSTY++ +
Sbjct: 300 VRPEITDT--LAIKAGRHPIREKIHSTKYIPNDVYASSQSRFQIITGCNMSGKSTYIRSL 357
Query: 403 CLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSER 462
L+ ++AQIG VPA +++ +V ++F R+ T DN +N STF TEM+E AF+++NV +
Sbjct: 358 ALMAVMAQIGSSVPAQYASFAIVHQLFARVSTDDNQATNVSTFSTEMREVAFILRNVDSK 417
Query: 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFY 522
S++++DELGR T+S+DG AI+ + E LL A F +H +L + V LH
Sbjct: 418 SMVIIDELGRGTASADGLAISIAIAEALLETHALVWFTTHFHDLPRIMEHRSGVINLHLA 477
Query: 523 VVIRNNR--LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI---TKKEVK 577
V + + R + +++ DG HYGL LA + LP +I+ A ++S + + K
Sbjct: 478 VDMSDPRSKITMLYKIVDGYVQEQHYGLALARIFSLPPYLIQVAEEVSSHLALAAQNRAK 537
Query: 578 RMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESF 623
I L K+ ++L ++L+ ++E++R L L+ F
Sbjct: 538 SPAIISLA-KRRRLLLTLGEQLMHAHKGTMEDEALREWLLRLQREF 582
>gi|348683970|gb|EGZ23785.1| hypothetical protein PHYSODRAFT_487593 [Phytophthora sojae]
Length = 430
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 166/433 (38%), Positives = 255/433 (58%), Gaps = 21/433 (4%)
Query: 203 LLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFI 262
+LD+ARR++ DT E +H + + Y+E + +P + N +G++L++P LP+ FI
Sbjct: 1 MLDVARRTYLDTIEKIHEVVHSYKENVGIP---IRLNYTRGYHLAVPLN--CNDLPAFFI 55
Query: 263 QVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLC 322
+ V + I CST L SLNVR A Y + ++ L+D IR S + + E +
Sbjct: 56 ERVATKSVICCSTKTLVSLNVRLNEALTAVYKLSNDVIQQLLDKIRPRASTMHAMVESVA 115
Query: 323 LLDMIVNSFAHTISTKPVDR-YTRPHFTENGPLAIDGGRHPILESIHND--FIPNNIFIS 379
LLDM++ SF + ++ P D+ YTRP TE+G L I GRHP+++ + D +IP++ F
Sbjct: 116 LLDMLL-SFVNVVALSPPDQPYTRPTVTEHGNLVIKKGRHPLVQRVLKDRTYIPSDTFFD 174
Query: 380 EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLE 439
+ IVTGPN +GKSTYL+ + LIVILAQ+GCYVPA +TI + DRI TR GT D++E
Sbjct: 175 PLSTFHIVTGPNCAGKSTYLRALALIVILAQMGCYVPASEATIPIRDRICTRFGTSDDME 234
Query: 440 SNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIF 499
N+S+F EM ETAF+++ + RSL+++DELGR T++ +G AIAWS E ++ +Y+ F
Sbjct: 235 ENASSFAVEMTETAFILETCTPRSLVLIDELGRGTANDEGAAIAWSIGEEIIQRGSYSCF 294
Query: 500 ASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR-HVPHYGLLLAEVAGLPS 558
A+H L+ LA +YP + H N F++ LKDGP YG+ A ++GLP+
Sbjct: 295 ATHYHQLNRLARLYPRCRCYHMGTGPNVNSAHFRYVLKDGPYPSTGMYGIKTAALSGLPA 354
Query: 559 TVIETARSITSRI-TKKEVKRMEINCLQYKQI------QMLYHAAQRLICLKYSNQDEES 611
VI A I ++ + +EV I+ +L+H L L+Y++ D
Sbjct: 355 EVIHEAERIYEKLRSDREVAENSIDQASTSSASSTINRNLLHH----LYVLRYADLDYTG 410
Query: 612 IRHALQNLKESFI 624
+R LQ+L+ F+
Sbjct: 411 LRRQLQHLRNRFL 423
>gi|302652857|ref|XP_003018268.1| hypothetical protein TRV_07718 [Trichophyton verrucosum HKI 0517]
gi|291181894|gb|EFE37623.1| hypothetical protein TRV_07718 [Trichophyton verrucosum HKI 0517]
Length = 676
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 199/646 (30%), Positives = 329/646 (50%), Gaps = 90/646 (13%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID ++ +LE+I+ L +A K LF +L T T G RLLR+N+LQP ++ +N
Sbjct: 2 IDLATIVSLELIQNLQNA-----KSKDCLFGILNETLTPMGARLLRSNILQPSTEVSKLN 56
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
TR D ++EL SNE +FF L+ K P F F A++S
Sbjct: 57 TRYDAVEELSSNEGMFFALTVIPTK-PS--------FLF--------------AEQS--- 90
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I+LKT L C Y ++ + + +++DV +
Sbjct: 91 INNVIMLKTFL-------------------------CSPRNYDPVQTILKQTLNDDVRYQ 125
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANK----------YR------ 226
R + +A+K G++ LLD+AR+++ + ++ V L ++ Y+
Sbjct: 126 TSALDLRNHRTYAVKAGVNNLLDVARQTYKEANDDVSELCSRLTGNVYIRRCYQRLRLTC 185
Query: 227 -EELKLPNLKLPFNNRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVR 284
EE +P L L F + + +Y + D+QG LP FI V + + TL+L +N +
Sbjct: 186 IEEYNIP-LDLRFESGRHYYFRVKSTDLQGVVLPDIFINVYRKKAYVEFQTLDLVKMNQK 244
Query: 285 NKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVN-SFAHTISTKPVDRY 343
+ E ++ ++ L+D R +S L ++E + LLDMI S+ HTI Y
Sbjct: 245 ITDSHNEVVSMSDQSIQELIDDARSQISSLFRISEAVALLDMIAAFSYLHTIQD-----Y 299
Query: 344 TRPHFTENGPLAIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQV 402
RP T+ LAI GRHPI E IH+ +IPN+++ S + I+TG NMSGKSTY++ +
Sbjct: 300 VRPEITDT--LAIKAGRHPIREKIHSTKYIPNDVYASSQSRFQIITGCNMSGKSTYIRSL 357
Query: 403 CLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSER 462
L+ ++AQIG VPA +++ +V ++F R+ T DN +N STF TEM+E F+++NV +
Sbjct: 358 ALMAVMAQIGSSVPAQYASFAIVHQLFARVSTDDNQATNVSTFSTEMREVTFILRNVDSK 417
Query: 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFY 522
S++++DELGR T+S+DG AI+ + E LL A F +H +L + V LH
Sbjct: 418 SMVIIDELGRGTASADGLAISIAIAEALLETHALVWFTTHFHDLPRIMEHRSGVINLHLA 477
Query: 523 VVIRNNR--LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI---TKKEVK 577
V + + R + +++ DG HYGL LA + LP +I+ A +++ + + K
Sbjct: 478 VDMSDPRSKITMLYKIVDGYVQEQHYGLALARIFSLPPYLIQVAEEVSNHLALAAQNRAK 537
Query: 578 RMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESF 623
I L K+ ++L ++L+ ++E++R L L+ F
Sbjct: 538 SPAIISLA-KRRRLLLTLGEQLMHAHKGTMEDEALREWLLRLQREF 582
>gi|395326423|gb|EJF58833.1| hypothetical protein DICSQDRAFT_148899 [Dichomitus squalens
LYAD-421 SS1]
Length = 829
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 186/583 (31%), Positives = 305/583 (52%), Gaps = 35/583 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID + NLE++ + SLF +L T G RLL+ N++ P+
Sbjct: 215 MMIDPDTALNLELVGNM-----SVRKSAHSLFGLLNHAFTAMGARLLKVNIMAPITVKSA 269
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
+ RLD ++EL+ E F + L+ K + D+++ +S+ + NAK +
Sbjct: 270 LEARLDVVEELIQTEDRFIEVKNALKSLNKVDFDQLISSLA------SSEAREATNAKLA 323
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
I+ ++ L+ + +LP LAK L+ ++S LL I + +E+ + K I E ++E+
Sbjct: 324 SARIAQMLNLRNIVQSLPRLAKALEGSRSQLL-QIIAEMISDERLEKMEKAISESLNEEA 382
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
AR A + +A+K + LLD+AR ++ + ++ L N+ EE +P L L +
Sbjct: 383 TPARGGLNAVNARVYAVKANFNRLLDVARETYKENVGDIYALRNRLVEEHNIP-LTLSYR 441
Query: 240 NRQ-GFYLSIPHKDIQ---GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ GF S+ D+ G+LP F+ S++EL N R K A E I
Sbjct: 442 DSDAGFVFSLKKTDLDDAGGELPRGFVDATPQKGRWVFSSIELKKRNARMKDALDETLIL 501
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
++ ++ L D + ++ L +E + LLD++ SFAH RP FT G LA
Sbjct: 502 SDKIIQDLTDDVVVNIGALYKASEAVALLDLLW-SFAHA-------SILRPEFT--GTLA 551
Query: 356 IDGGRHPILESIHND--FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GGRHP+LE + + IPN+++ EA++ IV GPNMSGKSTYL+Q+ L+ ++A GC
Sbjct: 552 IKGGRHPVLECVQSAGATIPNDVYCCEASSFQIVQGPNMSGKSTYLRQIALLTVMAMCGC 611
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
++PA + + R+ D + TR+ D+LE N STF +EM TA ++ +E SL+++DE+GR
Sbjct: 612 FIPAEYGSFRIHDHLLTRLSNDDDLERNLSTFASEMASTAMILGLATENSLVLIDEVGRG 671
Query: 474 TSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
TS +G AI+ + E L+ LK++ FA+H L+ + P+ + F
Sbjct: 672 TSVREGVAISHAIAEELIRLKSFVFFATHFHELTTTLSRQPSKS----RPTASKFGITFH 727
Query: 534 FQLKDGPRHVP-HYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+++ DG + HYGL LA +A LP +VI AR + + +E
Sbjct: 728 YKIVDGASDLQDHYGLDLARLADLPESVISEARRVAEYLADRE 770
>gi|380018623|ref|XP_003693226.1| PREDICTED: LOW QUALITY PROTEIN: mutS protein homolog 4-like,
partial [Apis florea]
Length = 1084
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 197/583 (33%), Positives = 317/583 (54%), Gaps = 41/583 (7%)
Query: 2 NIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
NID S R+LE+++ + SL L T G +LLRA++LQP + I
Sbjct: 264 NIDLESARSLELVQS------QCGQRNISLLGTLDRCSTPMGRKLLRASILQPPCEGRVI 317
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQT 121
R + EL+SN L + +R+ DR+L P VL +N + ++
Sbjct: 318 LERQAAVAELVSNRSLRALIQPIVRRL-YGADRLLL-LSITP------VLHENNVQNAEQ 369
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
++ ++LLK LD +P L K+L + +S + I + + E +++ +R+RI E + D
Sbjct: 370 NLNYVLLLKNLLDVIPELGKILSNGESDIFCKIQKKL-EIDEFRLMRERILETVHPDARS 428
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFC----DTSEAVHNLANKYREELKLPNLKLP 237
+ Q+CFAI+ GI+ LLDIAR+++C D V NL++KY+ L L
Sbjct: 429 VTGYTSSNMQRCFAIRAGINDLLDIARQTYCELIDDMKIMVENLSSKYKLALSLS----- 483
Query: 238 FNNRQGFYLS-IPHKDIQGKL---PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
N G+++ I ++ ++ PS FI+V K +T LA+L+ + K A E +
Sbjct: 484 CNANLGYHIQMILPRNSNAEIFDPPSEFIEVRKSKRAYTMTTNALATLSQQCKIACEELH 543
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ + + L L+ +IRE + L L + LD+I S A S + Y RP F
Sbjct: 544 LMSNVLLCDLLQSIREYIGCLFQLNADIAELDLIT-SLAQISSLQA---YVRPLF--GSK 597
Query: 354 LAIDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
L + RHPI++ D +PNNI+ S N+ +++GPNMSGKSTYL+Q+ L+ I+AQ+G
Sbjct: 598 LELIDSRHPIMDVFGLDSPVPNNIYASIPKNLCVISGPNMSGKSTYLKQIVLLHIMAQLG 657
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
C+VPA + R+ + +F ++ T D++E N+STF EMKE +++++++ SLI++DEL +
Sbjct: 658 CFVPAKQAMFRITNLVFCKIVTRDDIECNASTFSLEMKEAQYILRSITPTSLIILDELCK 717
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV------IR 526
T+ +G +IAW+ CE LL+ A+ A+H NL++L +Y NV +F +
Sbjct: 718 GTAIEEGASIAWAICEKLLNTTAFIFAATHFSNLTKLGDLYFNVTNQYFETINVQGSKTD 777
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
N+RL + +LK G YG+ LAE++GLP TV E AR S
Sbjct: 778 NHRLTYTHRLKSGVAPTDDYGIALAELSGLPKTVTEKARKYAS 820
>gi|301114659|ref|XP_002999099.1| DNA mismatch repair protein mutS, putative [Phytophthora infestans
T30-4]
gi|262111193|gb|EEY69245.1| DNA mismatch repair protein mutS, putative [Phytophthora infestans
T30-4]
Length = 430
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 169/435 (38%), Positives = 252/435 (57%), Gaps = 25/435 (5%)
Query: 203 LLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPH--KDIQGKLPST 260
+LD+ARR++ DT E +H + + Y+E L +P + N +G++L+IP KD LP++
Sbjct: 1 MLDVARRTYLDTIEKIHEIVHVYKENLGIP---MRLNYTRGYHLAIPVNVKD----LPAS 53
Query: 261 FIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEV 320
FI+ V I CST L SLNVR A Y + ++ L+D IR S + + E
Sbjct: 54 FIERVAAKTVICCSTRALVSLNVRLNEALTAVYKLSNDVIQQLLDKIRPRASTMHAMVES 113
Query: 321 LCLLDMIVNSFAHTISTKPVDR-YTRPHFTENGPLAIDGGRHPILESIHND--FIPNNIF 377
+ LLDM++ SF + ++ P D+ YTRP TE+G + I GRHP++E + D +IP+N F
Sbjct: 114 IALLDMLL-SFVNVVALSPPDQPYTRPTVTEHGNMIIKKGRHPLVERVLKDQAYIPSNSF 172
Query: 378 ISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDN 437
+ IVTGPN +GKSTYL+ LI I+AQ+GCYVPA + I + DRI TR GT D+
Sbjct: 173 FDPVSTFHIVTGPNCAGKSTYLRATALITIMAQMGCYVPASKAIIPIRDRICTRFGTSDD 232
Query: 438 LESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYT 497
+E N+STF EM ETAF+++ + +SLI++DELGR TS+ +G AIAWS E ++ +YT
Sbjct: 233 MEENASTFAVEMTETAFILEASTPKSLILIDELGRGTSNDEGAAIAWSIAEEIIDRGSYT 292
Query: 498 IFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP-RHVPHYGLLLAEVAGL 556
FA+H L+ LA +YP + H + + F++ LKDGP YG+ A + GL
Sbjct: 293 CFATHYHQLNRLAQMYPRCRCYHMGTESNTSSVSFRYILKDGPFPSTGMYGIKTAALCGL 352
Query: 557 PSTVI-ETARSITSRITKKEVKRMEIN----CLQYKQI--QMLYHAAQRLICLKYSNQDE 609
P+ +I E R+ + +E N +I +L+H L L+Y++ D
Sbjct: 353 PAELIREAERTYEKLRSDREAAETATNQDSATNDTSKINRNLLHH----LYALRYADLDN 408
Query: 610 ESIRHALQNLKESFI 624
+R LQ L+ F+
Sbjct: 409 AGLRRQLQYLRNRFL 423
>gi|402221452|gb|EJU01521.1| hypothetical protein DACRYDRAFT_89247 [Dacryopinax sp. DJM-731 SS1]
Length = 795
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 189/591 (31%), Positives = 309/591 (52%), Gaps = 39/591 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKK--RSLFHMLKTTKTIGGTRLLRANLLQPLKDI 58
M IDA S RNLE+I L ++KK SLF +L T R+LRAN+L P+ ++
Sbjct: 209 MLIDADSARNLELINNL-------THKKSNHSLFGILNDCFTPMAARILRANILAPVTNL 261
Query: 59 ETINTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAK 117
IN RLD + EL E F + + LR + D+++ + T+ N K
Sbjct: 262 NAINQRLDAVQELTDMEDRFTSIKESLRGLKGVDLDKLITALIVSEARPTT------NVK 315
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ + ++ L+TA+ AL + + L +S LL + R + +++ + I E ++E
Sbjct: 316 IAEQRVGQMLTLRTAVRALKAVREALGGCRSDLLKAVER-LINDDRIDQLDSLIAEALNE 374
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D A+ + + +A+K + LLD+AR ++ + V+ L + EE +P L L
Sbjct: 375 DAGIAKNGVHNKNMKVYAVKANYNRLLDVARETYKEDITEVYALHQRISEEHDMP-LDLQ 433
Query: 238 FNNRQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+ GF+ ++ + G+LP F+ V G CST+EL N R K A E + +
Sbjct: 434 WT-ENGFHFTVKKDEAPNGRLPKGFVDVNAKGPKWMCSTMELKKWNARVKDALNETMLIS 492
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ ++ ++ + E V+VL +E + LLDM+ +FA+ RP FT LAI
Sbjct: 493 DQIIQDVLAEVIEYVAVLWKASEAIALLDMLW-AFANA-------SIIRPEFTST--LAI 542
Query: 357 DGGRHPILESIH--NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHPILE + + N+++ S+ + +V GPNMSGKSTY++QV L+VI+A IGC+
Sbjct: 543 KAGRHPILEVVQPPGMLVANDVYCSDGTSFQLVQGPNMSGKSTYIRQVALLVIMAMIGCF 602
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
+PA +++ R+ D + TR+ D+ E N STF EM +A ++ +E SLI++DELGR T
Sbjct: 603 IPAEYASFRLHDALLTRLSNDDDAERNLSTFAQEMATSAMILGMATENSLILVDELGRGT 662
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN------ 528
S +G I + E ++ KA+ F +H +L +P V LH V
Sbjct: 663 SPHEGIGICHALAEEMIQSKAFVFFTTHFNDLGATLGKHPTVTSLHLEVNTTRQTTSTGF 722
Query: 529 RLDFKFQLKDGP-RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
+ F+ +++DGP HYGL LA++A LP ++ T+ + + ++E R
Sbjct: 723 NMVFQHKIRDGPMEEQNHYGLELAKLADLPDGLLATSARMAEHLAERERVR 773
>gi|307205542|gb|EFN83847.1| MutS protein-like protein 4 [Harpegnathos saltator]
Length = 835
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 203/581 (34%), Positives = 314/581 (54%), Gaps = 38/581 (6%)
Query: 3 IDATSVRNLEII--EPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
ID S R+LE++ + HSA+ SL + T G RLLR ++LQP D +
Sbjct: 262 IDIESARSLELVVSQSKHSAV--------SLLGTMDRCLTSMGRRLLRVSILQPPCDERS 313
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R C+ EL+ N L L +++ TDR+L + S L+ ++ + ++
Sbjct: 314 IVDRQSCVAELVDNRSLCASLQPVVQRL-FGTDRLL--------TLASTPLNTNDMQNAE 364
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ +LLK++LD +P L VL + +++ EN ++ ++ +I +I D
Sbjct: 365 RNLNYALLLKSSLDIVPELEAVLATGTHAFFVKMRKNL-ENSEFKVMKDKIMTLIHADAR 423
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + Q+CFAIK GI+ LLDIAR+ +C+ + +L + KLP L L +N
Sbjct: 424 FVKGSTSSSMQRCFAIKAGINELLDIARQVYCELINDMKSLVEVSAVKHKLP-LSLEYNV 482
Query: 241 RQGFYLS--IPHK-DIQ-GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
G+++ +P DI L + FIQV K+ + +T L +LN + + A E Y+ +
Sbjct: 483 NLGYHMHVVVPRGLDIAISDLSAEFIQVRKNRRSFTMTTTALLTLNKQCRKACEEIYVMS 542
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
L L++ IR+ + L L+ + LD+++ S A IS P Y RP F L +
Sbjct: 543 NTLLTHLLEDIRQHIGCLFQLSADVAELDLVL-SLAQ-ISCNP--EYVRPSF--GMKLEL 596
Query: 357 DGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
HPI+E + D +PN++ + A N +VTGPNMSGKSTYL+Q+ L+ I+AQIG YV
Sbjct: 597 RDSLHPIMELFNTDLPVPNDVDATSAYNFHLVTGPNMSGKSTYLKQIVLLQIMAQIGSYV 656
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA +T RV DRI R+ + D+ E N+S ++ EMKE +++ +V+ RSL+V+DEL R T+
Sbjct: 657 PASKATFRVADRILCRICSRDDAELNASAYVLEMKEAQYILHSVTPRSLVVLDELCRHTT 716
Query: 476 SSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN------R 529
+G AIAWS CE LL A+T A+H +L+EL+ Y NV I F + +
Sbjct: 717 VEEGSAIAWSICEKLLLTSAFTFAATHFLHLTELSNKYHNVTIHCFETKMAESNGSDQLH 776
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSR 570
L + +L +G HYG+ LAEV+ LP V AR SR
Sbjct: 777 LIYTHKLNNGTAPTDHYGIALAEVSSLPKCVTSKAREYASR 817
>gi|317140002|ref|XP_001817903.2| DNA mismatch repair protein Msh4 [Aspergillus oryzae RIB40]
Length = 847
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 181/628 (28%), Positives = 335/628 (53%), Gaps = 57/628 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ L +A K SLF ++ + T G RLLRAN+LQP ++
Sbjct: 194 MLIDLSTIVSLELIQNLQNA-----RSKDSLFGLMNESLTPMGGRLLRANILQPSTEVSK 248
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++ R D +++L + ++F + Q L+ F + D+VL P K T + ++
Sbjct: 249 LSARYDAVEDLFTKGEMFVSIRQALKGFI-DADKVLTSLILVPTKRTFQYVEQS------ 301
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++++I+LKT L C + ++ + I ++E V
Sbjct: 302 --VNNVIMLKTYL-------------------------CAPAGHRAVEELIESTLNEYVT 334
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ + ++ G++ LLD+AR+++ + + +L K L L L F+
Sbjct: 335 YQTRPLDLRNQRIYCVRAGVNSLLDVARQTYKEANMDAADLITK------LSALDLKFDT 388
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
+ +Y++I ++ LP FI + + N I C TL+L +N + A E ++ +
Sbjct: 389 ARQYYINISATEV-NTLPEVFINIYRKKNRIECQTLDLVKMNQKIIDAHNEVINMSDQTV 447
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
L++ IR +++ L ++E + +LDM+ ++FA + Y R T+ LAI GR
Sbjct: 448 HELIEDIRSEIAHLFKISEAIAMLDML-SAFAQLATNYD---YVRAELTD--VLAIKSGR 501
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HPI E IH FIPN+ + ++ ++ ++TG NMSGK TY++ + L+ I+AQIG ++PA +
Sbjct: 502 HPIREKIHTKKFIPNDAYATQQSHFQVITGCNMSGKYTYIRSLALMTIMAQIGSFIPAEY 561
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ +V ++F R+ T D+LE+N STF EM+E AF+++N+ RS++++DELGR TS++DG
Sbjct: 562 ACFPIVHQLFARVSTADDLEANVSTFAAEMREMAFILRNIESRSMVIVDELGRGTSTTDG 621
Query: 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQLK 537
AIA + E L+ A F +H +L+ + V LH V I ++ +++
Sbjct: 622 LAIAIAIAEALVESHALVWFVTHFHDLAVVMAERSGVVSLHLAVEISPDTTKMTMLYKIA 681
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN--CLQYKQIQMLYHA 595
+GP YGL LA++ LP V+E A++++ ++ + +R + ++ ++
Sbjct: 682 EGPETNRSYGLALAKLVDLPPGVLEYAQTVSEKMNQIAQRRHSKSRALAVSRKRNLILSL 741
Query: 596 AQRLICLKYSNQDEESIRHALQNLKESF 623
++L+ + + E++R L+ L++ F
Sbjct: 742 KEQLLQARDGKLEGETLRKWLKRLQDEF 769
>gi|392596903|gb|EIW86225.1| hypothetical protein CONPUDRAFT_45677 [Coniophora puteana
RWD-64-598 SS2]
Length = 819
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 183/584 (31%), Positives = 313/584 (53%), Gaps = 33/584 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID + RNLE++ + SLF ++ T T RLLRA +L P+ +
Sbjct: 201 MMIDPETARNLELVNNI-----TYKKSSHSLFGVMNHTYTPMAARLLRATILAPITVEAS 255
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
+ +RLD ++EL++NE+ F + L+ K + D+++ ++S +A+ +
Sbjct: 256 LESRLDAVEELVNNEERFSDVRIALKTLNKLDLDKLISSLAAYEVTISS------SARPA 309
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ ++ L++ + +P L + L +QS LL I + + + I + E ++++
Sbjct: 310 SARVLQMLNLRSLVRNIPNLRRALHGSQSTLL-RIIEKMISDTRLDRIDALVAENLNDEA 368
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
A+ A + +A+K + LLD+AR ++ + +H L E+ LP L L +
Sbjct: 369 GPAKTGIAAVNARVYAVKANRNRLLDVARETYKENVGDIHQLCAMLCEKHGLP-LFLVYQ 427
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+ S +D++G+LP FI V S+L+L +N R K A E + ++
Sbjct: 428 E-SGYVFSSKKEDLEGELPPGFINVTMQKGRWLFSSLDLKKMNARMKDALDETLMLSDKI 486
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ +V AI+ D L ++ + L+D ++ SFAH RP FT G LAI G
Sbjct: 487 VQDMVGAIQGDSGALYKASDAIALVD-VLWSFAHV-------SIIRPEFT--GTLAIKAG 536
Query: 360 RHPILESIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHPILE++ + + N+++ ++++ I+ GPNMSGKSTYL+Q L+ I+A GC+VPA
Sbjct: 537 RHPILETVQSAGTLVSNDVYSCDSSHFQIIRGPNMSGKSTYLRQTGLLAIMAMCGCFVPA 596
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+++ RV D + TR+ DN+E + STF EM +A ++ + ++L+++DELGR TSSS
Sbjct: 597 EYASFRVHDALLTRLSNDDNMEKSLSTFANEMVTSAMILGLATSQTLVLVDELGRGTSSS 656
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRNNRLDF 532
+G IA + E L+ +K +T FA+H E LS + P V LH V N + +
Sbjct: 657 EGVGIAHAIAEELIDIKCFTFFATHFEVLSTTLSRQPGVVNLHLSVQRARSSASNIGVTY 716
Query: 533 KFQLKDG-PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
++++ DG P + HYGL LA +A LP+ V+ A ++ + +KE
Sbjct: 717 QYKILDGEPDEMEHYGLELARLADLPADVMSEAHRVSEALVEKE 760
>gi|402077022|gb|EJT72371.1| MutS protein [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 838
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 183/587 (31%), Positives = 309/587 (52%), Gaps = 40/587 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S+ +LE+++ +A + SLF +L T T G R LR+++LQP +
Sbjct: 183 MMIDVSSIHSLELLQNAQNA-----RSRNSLFGLLNHTLTPMGARYLRSSILQPSTKRKL 237
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK--- 117
I R + + EL + LF+ + L++ P + D+V+ F + +DN +
Sbjct: 238 IEPRQNAVKELSEFQGLFYDVRNALKRLP-DIDKVVSQLIF---------IRIDNDEDLA 287
Query: 118 ---KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
+ +++I+ I+ +K + A+P L L A+ +L + ++ C E I I +
Sbjct: 288 MTHEQKSMINCILQIKQFVAAIPALHDALNLAKCDVLIKV-QAQCLPEITQKILDIIDKH 346
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
+D+D L ++ P R Q +AIK G++ +LD+AR++F + + VH +++ E L +
Sbjct: 347 VDKDALFSQTPLERRAQTIYAIKAGLNPMLDLARQAFAEQQDNVHKHVSEFNAEHNLVS- 405
Query: 235 KLPFNNRQGFYLSIPHKD-IQGKL--PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
++ F++ +G+YL D I+ L P I VV + C T+EL LN K+A E
Sbjct: 406 EIKFDSSRGYYLRFLASDYIEANLAHPDLLINVVPKRTHCECQTIELEKLNRDIKAAEDE 465
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
+R + L +R ++ LT L + + LDM+ S AH ++ + Y RP +
Sbjct: 466 TLMRGAKAIGMLAHELRTEIPALTRLCQAVGYLDMLA-SLAHVVTA---NDYCRPEISTT 521
Query: 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
+A+ RHP++E ++F+P +++ S ++TG NMSGKST+++ +I I+AQI
Sbjct: 522 --MALKKARHPLVEKCVDNFVPYDVYASPGYTFQVLTGANMSGKSTFIKTAAVIQIMAQI 579
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA +TI +V ++FTRM D +E N S F EM+E AF+++N +SL+V+DELG
Sbjct: 580 GSFVPAQTATIPMVKKVFTRMIKDDCMEENVSAFSQEMREMAFILRNADNKSLVVVDELG 639
Query: 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN---- 527
R TS+ DG A+A + E LL+ A FA+H L+E+ P V H +R
Sbjct: 640 RGTSTQDGLAMAIAMAEELLASGACVFFATHFHELAEIMQGMPRVVNQHLRTEVRTVGHG 699
Query: 528 --NRLDFKF--QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSR 570
R + K + +GP YGL LA+ G P + A+ + +
Sbjct: 700 EAARPELKMLHTVAEGPVAQGDYGLQLAKAVGCPKPFLGLAQVVADK 746
>gi|390603883|gb|EIN13274.1| hypothetical protein PUNSTDRAFT_109550 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 832
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 203/648 (31%), Positives = 333/648 (51%), Gaps = 57/648 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VRNLE+ + S SLF +L T T G RLLR N+L P D+
Sbjct: 213 MMIDSDTVRNLELACNMTS-----KRSAHSLFGILNHTNTAMGARLLRVNILSPSTDL-- 265
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCF-KPKKVTSKVLDVDNAKK 118
I TRL+ ++EL+++E F + L+ K + D+++ + +++T+ +AK
Sbjct: 266 IETRLNAVEELINSEDKFTAVRDALKTMHKMDFDKLITSLAISEARELTT------SAKV 319
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID-- 176
+ T +S ++ L+ + +LPLL L ++S LL +IY V + KR+G++ D
Sbjct: 320 ASTRVSEMLNLRNLVKSLPLLQTALAGSRSRLLQDIYEFVSD--------KRLGQIEDLV 371
Query: 177 -----EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL 231
ED + A + +A+K + LLD+AR ++ + + L EE L
Sbjct: 372 RCSLNEDAAPLKGGLGAINSRVYAVKANHNRLLDVARETYKENVGDIFQLKRLMSEEHGL 431
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQG--KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAA 289
L L + GF ++ +++G KLP F+ V+ S++EL N R K A
Sbjct: 432 A-LTLVYQE-SGFVFALQKSELEGTDKLPKDFVNVMVQKGRYLFSSMELKKRNARMKDAL 489
Query: 290 GECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
E I ++ ++ LV AI ++ L +E + +DM+ ++FAH RP FT
Sbjct: 490 DETLILSDAIIQDLVSAILVNIGALYKASEAMAQIDML-SAFAHV-------SILRPEFT 541
Query: 350 ENGPLAIDGGRHPILESIH--NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
G LA+ GRHPILE + +PN+++ A +V GPNMSGKSTYL+Q+ L+ I
Sbjct: 542 --GTLAVKAGRHPILEGVQAAGMLVPNDVYCCGATTFQMVHGPNMSGKSTYLRQIGLLTI 599
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+ G +VPA +++ RV D + TR+ D+ E + STF EM +A ++ + SL+++
Sbjct: 600 MGMAGSFVPAQYASFRVHDALLTRLSNDDDAEKSLSTFANEMASSAMILGLATADSLVLI 659
Query: 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
DELGR TS DG I+ + E L+ K +T FA+H L+ + P+V LH V RN
Sbjct: 660 DELGRGTSPRDGVGISHAIAESLIKTKCFTFFATHFHELTMTLSRQPSVVNLHLSVQ-RN 718
Query: 528 NR------LDFKFQLKDGP-RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
R + +++++ DG HYGL LA +A LP VI+ R++ ++TK++++ E
Sbjct: 719 RRSNVNFGMTYQYKILDGAVGDYEHYGLDLARLADLPPDVIDGGRAVAVQLTKRQLQLEE 778
Query: 581 ---INCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFID 625
+ K+ +L Q L+YS + + L L+++ D
Sbjct: 779 QSRTTKIFTKRQSLLKLKTQLTQALEYSALPDGELAAHLSRLQKNIAD 826
>gi|409051050|gb|EKM60526.1| hypothetical protein PHACADRAFT_189655 [Phanerochaete carnosa
HHB-10118-sp]
Length = 858
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 187/594 (31%), Positives = 313/594 (52%), Gaps = 44/594 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLK-----TTKTIGGTRLLRANLLQPL 55
M ID + RNLE++ + S KRSL + GG +++ ++ P
Sbjct: 214 MMIDPETARNLELVSNMTS--------KRSLHSLFGHDSEPYVHGYGG-QIVASDASCP- 263
Query: 56 KDIETINTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVD 114
+ I+ RLD ++EL+ E+ F + L+ K + D+++ S+ ++
Sbjct: 264 -NHSAIDARLDVVEELIQTEERFHEIKDALKMLNKLDLDKLISSLA------ASEAREIS 316
Query: 115 NAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
+AK + ++ ++ L++ + +P+LAK L+ ++S LL I + + +E+ I + +
Sbjct: 317 SAKTAAARVTQMLNLRSIVQCMPMLAKALQGSRSQLL-QIIQEMISDERLGKIEQLVSNS 375
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
++E+ + + A + +A+K D LLD+AR ++ + + L + EE LP L
Sbjct: 376 LNENTMLYKGGLGAINAKVYAVKANYDRLLDVARETYKENVGDIFALNSALSEEHDLP-L 434
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
L + + GF + D++G+LP FI V S++EL N R K A E I
Sbjct: 435 MLVYQD-TGFIFMLKKTDLEGELPPGFINVTSRKGKWVFSSVELKKRNARMKDALDETLI 493
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
+E + LV I D+ L +E + LLDM+ +FAH RP FT G L
Sbjct: 494 LSEKIIHDLVADIVVDIGALYKASEAVALLDMLW-AFAHAA-------ILRPEFT--GTL 543
Query: 355 AIDGGRHPILESIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
AI GRHPILE + + +PN+++ EA++ I+ GPNMSGKSTYL+Q+ L+ I+A G
Sbjct: 544 AIKSGRHPILEGVRSAGTLVPNDVYCCEASSFQIIQGPNMSGKSTYLRQIGLLTIMAMSG 603
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
C+VP+ + + RV D + TR+ D++E + STF EM +A ++ + SLI++DELGR
Sbjct: 604 CFVPSEYGSFRVHDALLTRLSNDDDMEKSLSTFANEMASSAMILGLATADSLILIDELGR 663
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRN 527
TS +G I+ + E L+ LK Y FA+H + L + P+V LH V N
Sbjct: 664 GTSPKEGVGISHAIAEQLIKLKPYVFFATHFDELVTALSRQPSVVNLHLSVQKTRHTGTN 723
Query: 528 NRLDFKFQLKDGPR-HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ F++++ DG + ++ HYGL LA +A LP+ V+ AR ++ ++ E K+ E
Sbjct: 724 FGMRFEYRITDGAQENLTHYGLDLARLADLPADVMSEARRVSEKLAAIEAKKNE 777
>gi|393247530|gb|EJD55037.1| hypothetical protein AURDEDRAFT_178870 [Auricularia delicata
TFB-10046 SS5]
Length = 880
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 188/594 (31%), Positives = 307/594 (51%), Gaps = 47/594 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID + RNLE++ A SL+ +L T T RLLR NLL PL +
Sbjct: 236 MLIDTCTARNLELV-----ANMTQKKSTHSLYGLLNHTFTPMAARLLRVNLLAPLTVRSS 290
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
++ RL+ ++EL+ NE + + LR F K + D+++ + S+ + + AK +
Sbjct: 291 LDARLNAVEELVQNEDKYAAIKDSLRAFGKNDLDKLVSNLA------ASEARETEAAKPA 344
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
T I+ I+ L+ + ALP L + L+ S LL I + + + I + + ++ED
Sbjct: 345 ATRITQILALRGVVRALPALREALQHCNSNLLC-IMNQMLSDPRIEEIDQLVSAQLNEDA 403
Query: 180 LHARVPFV-ARTQQCFAIKGGI----------------DGLLDIARRSFCDTSEAVHNLA 222
+ + A + +A+K I +GLLD+AR ++ + V A
Sbjct: 404 TPQKGSGINAVNMRVYAVKASIVAVATCVSSDISQANCNGLLDVARETYKEAVSDVFAFA 463
Query: 223 NKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASL 281
++ LP +K P + F+ ++ I G LP ++ V G +H S+L+L L
Sbjct: 464 RSEADKTGLP-IK-PVYHDSCFWFAVSKACIGGDDLPRGYLNVTTRGKTVHFSSLDLQKL 521
Query: 282 NVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD 341
N++ K + E I ++ + LV + + L +E + +LDM+ SFAH ++
Sbjct: 522 NMKVKDSLDETLILSDKTIATLVSDVLKAAGALYKASEAVAILDMLW-SFAHV---SIIE 577
Query: 342 RYTRPHFTENGPLAIDGGRHPILESIHND--FIPNNIFISEAANMVIVTGPNMSGKSTYL 399
Y+RP FT+ LAI GRHPILE + + N++F E ++ +V GPNMSGKSTYL
Sbjct: 578 SYSRPEFTDT--LAIKAGRHPILEKVQGTGTVVANDVFCCEQSSFQLVQGPNMSGKSTYL 635
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+QV I ++A GC+VPA +++IR+ D + TR+ D++E N STF EM + ++
Sbjct: 636 RQVAFITVMAMCGCFVPAEYASIRLHDALLTRLSNDDDMERNLSTFANEMVTSTMILGLA 695
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKIL 519
++ +L+++DELGR TS ++G IA + E L+ LK++ FA+H +L + YP+V L
Sbjct: 696 TDHTLVLIDELGRGTSPAEGLGIAHAIAEKLIELKSFVFFATHFNDLVATLSRYPSVINL 755
Query: 520 HFYV-----VIRNNRLDFKFQLKDGPRHV-PHYGLLLAEVAGLPSTVIETARSI 567
H V V L F++++ DG HYGL +A +A LP V AR +
Sbjct: 756 HLSVQRPPRVTNPAGLVFQYKITDGAADTKSHYGLDVAMLADLPEDVTTEARRV 809
>gi|383847430|ref|XP_003699357.1| PREDICTED: mutS protein homolog 4-like [Megachile rotundata]
Length = 1072
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 201/584 (34%), Positives = 314/584 (53%), Gaps = 44/584 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID S R+LE++E + G N SL +L T G +LLR N+LQP + I
Sbjct: 259 IDLESARSLELVE----SQCGQRNM--SLLGVLDRCSTPMGRKLLRTNILQPPCEERIIL 312
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + E+ S+ L + +R+ DR+L T+ ++ ++ + ++
Sbjct: 313 RRQAAVAEIASDSSLRALVQSIVRRL-YGADRLLAL-------ATTPLIQDNSVQCAEQN 364
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ ++LLK LD +P LA VL + LL I R +N ++ SIR+RI E I D
Sbjct: 365 LNYVLLLKNLLDVVPELASVLSAVECDLLRTI-RKKLDNPEFQSIRERILETIHPDARSV 423
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFC----DTSEAVHNLANKYREELKLPNLKLPF 238
+ Q+CFAIK GI+ LLDIAR+++C D V NL+ KY+ L L
Sbjct: 424 TGYTSSNMQRCFAIKAGINDLLDIARQTYCELIDDMKTMVENLSAKYQLILSLN-----C 478
Query: 239 NNRQGFYLS-IPHKDIQG---KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
N G+++ I K++ + P+ FI+V K+ + +T LA+L+ + K A E ++
Sbjct: 479 NASLGYHVQVILPKNVNPDTFEPPAEFIEVRKNKRSCTMTTTVLATLSQQCKIACEELHL 538
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP- 353
+ + L L+ +IR + L L+ + LD+ V S A +ST + Y RP F GP
Sbjct: 539 MSNVLLCDLLQSIRGHIGCLFQLSADVAELDL-VTSLAQ-VST--LQMYARPTF---GPR 591
Query: 354 LAIDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
L + RHP++E D PN+I S N I++GPNMSGKSTYL+Q+ L+ I+AQIG
Sbjct: 592 LDLVESRHPVMEVFGVDAPTPNDITASVPYNFSIISGPNMSGKSTYLKQIVLLHIMAQIG 651
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
C+VPA + R+ D +F ++ D++E N+STF EMKE +++++V+ SL+V+DEL +
Sbjct: 652 CFVPAKNAMFRITDFVFCKIAVRDDIECNASTFTLEMKEAQYILRSVTPTSLVVLDELCK 711
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN---- 528
T+ +G +IAW+ CE LL+ A+ A+H L++L +Y N HF + +
Sbjct: 712 GTAIEEGTSIAWAICEQLLNTTAFVFAATHFSYLTKLPDLYRNATSYHFEAIKVQDADEE 771
Query: 529 ---RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
RL + +LK G YG++LAE+ GLP + E AR S
Sbjct: 772 IECRLTYTHRLKLGVTPSDDYGIVLAELTGLPKPITEKARKYAS 815
>gi|350412728|ref|XP_003489742.1| PREDICTED: mutS protein homolog 4-like [Bombus impatiens]
Length = 1112
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 203/593 (34%), Positives = 322/593 (54%), Gaps = 44/593 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID S ++LE+++ + G N SL L T G +LLR+N+LQP + I
Sbjct: 261 IDLESAQSLELVQ----SQCGRRNI--SLLGSLDRCLTPMGRKLLRSNILQPPCEELVIL 314
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + EL+SN L + +R+ DR+L T V+ ++ + ++
Sbjct: 315 ERQAAVTELVSNSSLRALIQPIIRRL-YGADRLLA-------LSTMPVMHENSVQNAEHN 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ ++LLK LD +P L K+L +S LL I + + E +++ +R++I E I D
Sbjct: 367 LNYVLLLKNLLDVIPELGKILLAGESDLLRRIQKKL-ERDEFRLMREKIVETIHPDARSV 425
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFC----DTSEAVHNLANKYREELKLP-NLKLP 237
+ Q+CFAIK GI LLD+AR+++C D V NLA+K++ L L N L
Sbjct: 426 TGYTSSNMQRCFAIKAGISDLLDVARQTYCELIDDMKTMVENLASKHKLTLSLNCNASLG 485
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
++ + S+ ++I LPS FI+V K+ +T L +L+ + A E ++ +
Sbjct: 486 YHIQAILPRSLNTENIN--LPSEFIEVRKNKRTYTMTTNALVTLSQQCTIACEELHLMSN 543
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
+ L L+ IRE + + L + LD+I S A S + YTRP F L +
Sbjct: 544 VLLGNLLQNIREYIGSMFQLNADVAELDLIT-SLAQVSS---LQTYTRPLF--GSKLELV 597
Query: 358 GGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
RHPI++ D IPN++ S N+ +++GPNMSGKSTYL+Q+ L+ I+AQIGC+VP
Sbjct: 598 ESRHPIMDVFSLDGPIPNDVNASIPRNLYVISGPNMSGKSTYLKQIVLLHIMAQIGCFVP 657
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + R+ D IF ++ D++E N+STF EMKE ++++ V+ RSLI++DEL + T+
Sbjct: 658 AKKAMFRITDLIFCKIAIRDDIECNASTFALEMKEAQYILRCVTARSLIILDELCKGTAI 717
Query: 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IR-------NN 528
+G +IAW+ CE LL+ A+ A+H L++LA +Y NV LHF +R ++
Sbjct: 718 EEGASIAWAICEKLLNTTAFIFAATHFSYLTKLADLYYNVTNLHFETTNVRGPETDNCSH 777
Query: 529 RLDFKFQLKDG-PRHVPHYGLLLAEVAGLPSTVIETARS------ITSRITKK 574
RL + +LK G + YG+ LAE++GLP V E AR +T ++T K
Sbjct: 778 RLTYTHRLKSGVAAYSDDYGIFLAELSGLPKAVTEKARRYGSERVVTDQVTAK 830
>gi|336364354|gb|EGN92714.1| hypothetical protein SERLA73DRAFT_172695 [Serpula lacrymans var.
lacrymans S7.3]
Length = 839
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 193/619 (31%), Positives = 324/619 (52%), Gaps = 45/619 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKK-RSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M ID + R+LE++ H+ TS K RSLF +L T T +RLLR N+L P+
Sbjct: 218 MMIDPETARSLELV---HNR---TSKKSSRSLFGILNHTYTAMASRLLRVNILAPITVQS 271
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
I+ RLD ++EL+ E F L+ K + D+++ S+ ++ K
Sbjct: 272 AIDARLDAIEELVQYEDKFSDTRDALKSLNKMDFDKLISSLA------ASEARPSNSPKF 325
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+ +S ++ L++ + LPLL K L +S LL+ I+ V + E+ + I K I + ++++
Sbjct: 326 ASLRVSQMLNLRSFVRNLPLLQKALSGTRSQLLSIIHDMVSD-ERLSVIDKLIRDNLNDE 384
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+ A + +AIK + LLD+AR ++ + ++ L EE LP L L +
Sbjct: 385 ASPVKGGLTAVNARVYAIKANRNHLLDVARETYKENVGDIYQLNTSLSEEYGLP-LTLVY 443
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
GF ++ +++G+LP FI V + S + L +N R ++A E ++
Sbjct: 444 QE-SGFVFALKKDELEGELPQEFINVSERKGRKLFSIMRLKQMNARMQAALNETLNLSDK 502
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
++ LV + D L +E + L+D++ SFAH V Y + + P AI
Sbjct: 503 IIQELVTEVLGDAGALYKASEAIALVDLLW-SFAHA---SIVRNYGKHCY---WPRAIKA 555
Query: 359 GRHPILESIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHPILE+ H+ +PN+++ ++++ IV GPNMSGKSTYL+Q L+ I+A GC+VP
Sbjct: 556 GRHPILETTHSAGTLVPNDVYCCDSSSFQIVQGPNMSGKSTYLRQTGLLTIMAMCGCFVP 615
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +++ R+ D + TR+ D++E + STF EM +A ++ + R+L+++DELGR TS
Sbjct: 616 AEYASFRLHDALLTRLSNDDDMEKSLSTFANEMTSSAMILGIATPRTLVLIDELGRGTSP 675
Query: 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRNNRLD 531
++G ++ + E L+ +K + FA+H L+ + P V LH V N +
Sbjct: 676 NEGIGVSHAIAEELIKMKCFVFFATHFAELATTLSRQPTVVNLHLSVQKARQSTANFGMI 735
Query: 532 FKFQLKDG-PRHVPHYGLLLAEVAGLPSTV-------------IETARSITSRITKKEVK 577
F++++ DG P + HYGL LA +A LPS V +E R S+ +K V+
Sbjct: 736 FQYKIVDGLPEDMDHYGLELARLADLPSNVTTEGKRVAEALVDLEARRKAESQSSKVAVR 795
Query: 578 RMEINCLQYKQIQMLYHAA 596
R + L+ + Q+L H+A
Sbjct: 796 RRALLKLRTQLTQVLDHSA 814
>gi|340720522|ref|XP_003398685.1| PREDICTED: mutS protein homolog 4-like [Bombus terrestris]
Length = 1076
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 200/593 (33%), Positives = 318/593 (53%), Gaps = 44/593 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID S ++LE+++ + SL L T G +LLR+N+LQP + I
Sbjct: 224 IDLESAQSLELVQS------QCGRRNISLLGSLDRCLTPMGRKLLRSNILQPPCEERVIL 277
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + EL+SN L + +R+ DR+L T V+ ++ + ++
Sbjct: 278 ERQAAVTELVSNSSLRALIQPIIRRL-YGADRLLAL-------STMPVMHENSVQNAEHN 329
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ ++LLK LD +P L K+L +S LL I + + E +++ +R++I E I D
Sbjct: 330 LNYVLLLKNLLDVIPELGKILLAGESDLLRRIQKKL-ERDQFRLMREKIVETIHPDARSV 388
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFC----DTSEAVHNLANKYREELKLP-NLKLP 237
+ Q+CFAIK GI LLD+AR+++C D V NLA+K++ L L N L
Sbjct: 389 TGYTSSNMQRCFAIKAGISDLLDVARQTYCELIDDMKTMVENLASKHKLTLSLSCNASLG 448
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
++ + S+ ++ PS FI+V K+ +T L +L+ + A E ++ +
Sbjct: 449 YHIQAILPRSLNTENFNP--PSEFIEVRKNKRTYTMTTNALVTLSQQCTIACEELHLMSN 506
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
+ L L+ IRE + + L + LD+I S A S + YTRP F L +
Sbjct: 507 VLLGNLLQNIREYIGSMFQLNADVAELDLIT-SLAQVSS---LQTYTRPLF--GSKLELV 560
Query: 358 GGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
RHPI++ D IPN++ S N+ I++GPNMSGKSTYL+Q+ L+ I+AQIGC+VP
Sbjct: 561 ESRHPIMDVFSLDGPIPNDVNASIPRNLYIISGPNMSGKSTYLKQIVLLHIMAQIGCFVP 620
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + R+ D IF ++ D++E N+STF EMKE ++++ V+ RSLI++DEL + T+
Sbjct: 621 AKKAMFRITDLIFCKIAIRDDIECNASTFALEMKEAQYILRCVTARSLIILDELCKGTAI 680
Query: 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IR-------NN 528
+G +IAW+ CE LL+ A+ A+H L++LA +Y NV LHF +R ++
Sbjct: 681 EEGASIAWAICEKLLNTTAFIFAATHFSYLTKLADLYYNVTNLHFETTNVRGPETDNCSH 740
Query: 529 RLDFKFQLKDG-PRHVPHYGLLLAEVAGLPSTVIETARS------ITSRITKK 574
RL + +LK G + YG+ LAE++GLP V E AR +T ++T K
Sbjct: 741 RLTYTHRLKSGLAAYSDDYGIFLAELSGLPKAVTEKARRYGSERVVTDQVTAK 793
>gi|83765758|dbj|BAE55901.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 848
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 184/632 (29%), Positives = 336/632 (53%), Gaps = 60/632 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ L +A K SLF ++ + T G RLLRAN+LQP ++
Sbjct: 190 MLIDLSTIVSLELIQNLQNA-----RSKDSLFGLMNESLTPMGGRLLRANILQPSTEVSK 244
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++ R D +++L + ++F + Q L+ F + D+VL P K T + ++
Sbjct: 245 LSARYDAVEDLFTKGEMFVSIRQALKGFI-DADKVLTSLILVPTKRTFQYVEQS------ 297
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++++I+LKT YRS + ++ + I ++E V
Sbjct: 298 --VNNVIMLKT-----------------------YRS------HRAVEELIESTLNEYVT 326
Query: 181 HARVPFVARTQQCF----AIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
+ P R Q AI+ G++ LLD+AR+++ + + +L K E + L L
Sbjct: 327 YQTRPLDLRNQLRLSDNPAIQAGVNSLLDVARQTYKEANMDAADLITKLSESHGIA-LDL 385
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
F+ + +Y++I ++ LP FI + + N I C TL+L +N + A E +
Sbjct: 386 KFDTARQYYINISATEV-NTLPEVFINIYRKKNRIECQTLDLVKMNQKIIDAHNEVINMS 444
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ + L++ IR +++ L ++E + +LDM+ ++FA + Y R T+ LAI
Sbjct: 445 DQTVHELIEDIRSEIAHLFKISEAIAMLDML-SAFAQLATNYD---YVRAELTD--VLAI 498
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHPI E IH FIPN+ + ++ ++ ++TG NMSGK TY++ + L+ I+AQIG ++
Sbjct: 499 KSGRHPIREKIHTKKFIPNDAYATQQSHFQVITGCNMSGKYTYIRSLALMTIMAQIGSFI 558
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ +V ++F R+ T D+LE+N STF EM+E AF+++N+ RS++++DELGR TS
Sbjct: 559 PAEYACFPIVHQLFARVSTADDLEANVSTFAAEMREMAFILRNIESRSMVIVDELGRGTS 618
Query: 476 SSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFK 533
++DG AIA + E L+ A F +H +L+ + V LH V I ++
Sbjct: 619 TTDGLAIAIAIAEALVESHALVWFVTHFHDLAVVMAERSGVVSLHLAVEISPDTTKMTML 678
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN--CLQYKQIQM 591
+++ +GP YGL LA++ LP V+E A++++ ++ + +R + ++ +
Sbjct: 679 YKIAEGPETNRSYGLALAKLVDLPPGVLEYAQTVSEKMNQIAQRRHSKSRALAVSRKRNL 738
Query: 592 LYHAAQRLICLKYSNQDEESIRHALQNLKESF 623
+ ++L+ + + E++R L+ L++ F
Sbjct: 739 ILSLKEQLLQARDGKLEGETLRKWLKRLQDEF 770
>gi|328714525|ref|XP_001943834.2| PREDICTED: mutS protein homolog 4-like [Acyrthosiphon pisum]
Length = 645
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 195/576 (33%), Positives = 324/576 (56%), Gaps = 36/576 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + LE++ L+S+L N K +LF +L TIGG R LR+++LQP DI I+
Sbjct: 1 MDANTALRLELV--LNSSL----NAKNTLFDVLNKCATIGGQRRLRSSILQPSSDIRLIH 54
Query: 63 TRLDCLDELMSN-EQLFFGLSQFLRKFPKETD-RVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
R + ++E++S+ EQ F L L+KF TD L C K K T ++ S+
Sbjct: 55 NRQEAVEEILSSPEQNFILLRNVLQKF---TDVEQLYWLCTKVSKNTQQL--------SK 103
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ +LLKT L+ALP L +L+ +S + +I R N +Y+ + + I I+++
Sbjct: 104 LQGNYTLLLKTTLEALPALVDILEPFKSEYIFSI-RKTLSNSRYSKMLEIIEITINKEST 162
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+R ++ Q+CFA+K ++ LLD+AR + + E H+ E+L+ L +P N+
Sbjct: 163 RSRGFSQSQFQRCFAVKSNLNPLLDVARTIYSELIEEFHDEVKLLGEQLETEYL-IPQNS 221
Query: 241 -RQGFYLSIPHKDIQG---KLPSTFIQVVKHGNNI-HCSTLELASLNVRNKSAAGECYIR 295
++GF++ + K+I+ K P + + V+ NI +T +L LN R A E I
Sbjct: 222 CKRGFHVQVELKNIKNFNVKHPPSICKNVECVKNIVKFTTEDLLVLNFRLTQALNEVEIL 281
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
T L ++ +R+ +S + L + LD+I + +++ + TRP F + +
Sbjct: 282 TNAILNEMLKELRKYISCIYDLCNGIADLDLIFSFTQYSMRSG----LTRPKFGQY--MD 335
Query: 356 IDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I RHPIL+ I++ + N+IF S N+ I+TGPNM GKS Y++QV L+ I+AQIGC+
Sbjct: 336 IKSSRHPILDIINSVVTVDNDIFASTDKNLNIITGPNMGGKSIYIRQVALLQIIAQIGCF 395
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA F+ R+ DR+FTR+G D++ESN+ST++ E+KE ++ +++ SL+++DEL RAT
Sbjct: 396 VPATFAQFRICDRLFTRIGFGDSIESNASTWVLEIKELNGILPLLTKHSLVIIDELCRAT 455
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI---RNNRLD 531
S +G +AW+ CEH++ A+ A+H +++L +Y NV H + +N L+
Sbjct: 456 SCEEGSTLAWAICEHIMQSCAFIFLATHSTLITKLQDLYCNVLNYHMEALPARDSSNGLN 515
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ ++L G + YGL LA +P +IE A I
Sbjct: 516 YTYKLCPGATDIDDYGLTLARDVKMPEHLIEHATEI 551
>gi|225558129|gb|EEH06414.1| DNA mismatch repair protein [Ajellomyces capsulatus G186AR]
Length = 848
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 192/629 (30%), Positives = 339/629 (53%), Gaps = 68/629 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ L + S + LF +L T T G+RLLR+N+LQP +
Sbjct: 203 MLIDLSTIVSLELIQNLQN-----SKSRDCLFGVLNETLTPMGSRLLRSNVLQPSTEQAK 257
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R + ++EL E++F+ + Q L+ F ++D+VL P K+T +A++S
Sbjct: 258 LLARYNAVEELSMKEEMFYSVRQALKSF-VDSDKVLTSLIVMPTKIT-----FQHAEQS- 310
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I++II+LKT ++A+ + + L AQS LL I
Sbjct: 311 --INNIIMLKTYVNAIKPIHQALSGAQSTLLLAIR------------------------- 343
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
GI+ LLD+AR+++ + + V LA++ +E L L L F
Sbjct: 344 ----------------NAGINTLLDVARQTYKEANNDVVELASRLGDEYDLA-LDLRFET 386
Query: 241 RQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ +YL + + LP FI + K I TL+L LN + + E ++
Sbjct: 387 GRQYYLRLSVSILDNNPLPDVFINIFKRKTYIEFQTLDLVKLNQKITDSHNEVINMSDRT 446
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ L++ IR ++ L ++E + +LD++V +FAH ++ + Y RP T+ LAI G
Sbjct: 447 IQELIEDIRSQIAGLFRVSESIAMLDVLV-AFAHLVT---IQDYVRPELTDT--LAIKAG 500
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E IH+D ++PN+ + ++ + I+TG NMSGKSTY++ + L+ I+AQIGC+VPA
Sbjct: 501 RHPIREKIHSDKYVPNDAYATQQSRFQIITGCNMSGKSTYIRSLALMTIMAQIGCFVPAQ 560
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ +V ++F R+ T DN+E+N STF EM+E +F+++N+ +S++++DELGR TS++D
Sbjct: 561 YASFPIVHQLFARVSTDDNVEANVSTFSAEMREMSFILRNIEPKSMVIIDELGRGTSTND 620
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV--VIRNNRLDFKFQL 536
G AIA + E L+ A F +H +L+++ + V LH V + +++ +++
Sbjct: 621 GLAIAIAIAEALIESHALVWFTTHFHDLAKIMSERNGVVNLHLAVEMSLSTSKMTMLYKI 680
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK-EVKRMEINCLQY-KQIQMLYH 594
DG HYGL LA++ P ++ A+ ++ ++ K E +R L K+ +++
Sbjct: 681 SDGFVKDKHYGLFLAKLLPFPQPMLHKAQEVSEALSLKIENQRKRSKTLAIAKRRKLILD 740
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKESF 623
++L+ K + E +R L+ L+ F
Sbjct: 741 LKEQLLQAKDGALNGEPLRIWLKKLQYEF 769
>gi|225678197|gb|EEH16481.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 868
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 184/605 (30%), Positives = 328/605 (54%), Gaps = 63/605 (10%)
Query: 25 SNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQF 84
S + LF +L T T G+RLLR+NLLQP + + R + ++EL + E++F+ + Q
Sbjct: 248 SKSRDCLFGVLNETLTPMGSRLLRSNLLQPSTEQAKLLARYEAVEELSTKEEMFYSVRQA 307
Query: 85 LRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLK 144
L+ F ++D+VL P +VT + +A++S I++II+LKT ++A+ + + L
Sbjct: 308 LKTF-VDSDKVLTSLIVIPTRVT-----LQHAEQS---INNIIMLKTYVNAIKPIHQALS 358
Query: 145 DAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLL 204
QS LL I GI+ LL
Sbjct: 359 GTQSSLLLAIR-----------------------------------------NAGINSLL 377
Query: 205 DIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQ-GKLPSTFIQ 263
D+AR+++ + + V LA++ +E L L L F + +YL +P + +LP FI
Sbjct: 378 DVARQTYQEANNDVVELASRLGDEYDLA-LDLRFETGRHYYLRLPVSCLDNSELPDIFIN 436
Query: 264 VVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCL 323
+ + I TL+L LN + A E ++ + L++ IR +++ L ++E + +
Sbjct: 437 IFRKKTYIEFQTLDLVKLNQKITDAHNEVINMSDRSIHELIEDIRSEIAGLFRVSESIAM 496
Query: 324 LDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHND-FIPNNIFISEAA 382
LDM+ SFAH ++ + Y RP T+ LAI G+HPI E IH + ++PN+ + ++ +
Sbjct: 497 LDMLA-SFAHLVTMQD---YVRPELTDT--LAIKAGKHPIREKIHAEKYVPNDAYATQQS 550
Query: 383 NMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNS 442
I+TG NMSGKSTY++ + L+ ++AQIGC+VPA +++ VV ++F R+ T DN+E+N
Sbjct: 551 RFQIITGCNMSGKSTYIRSLALMTVMAQIGCFVPAQYASFPVVHQLFARVSTDDNVEANV 610
Query: 443 STFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502
STF EM+E +F+++N+ +S++++DELGR TS++DG AIA + E L+ A F +H
Sbjct: 611 STFSAEMREMSFILRNIEPKSMVIIDELGRGTSTTDGLAIAIAIAEALVESHALVWFTTH 670
Query: 503 MENLSELATIYPNVKILHFYVVI--RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTV 560
+LS++ V LH V + +++ +++ DG HYGL LA + P ++
Sbjct: 671 FHDLSKIMADRNGVVNLHLAVEMSPSTSKMTMLYKIADGFVKDKHYGLFLARLLPFPQSL 730
Query: 561 IETARSITSRITKK-EVKRMEINCLQY-KQIQMLYHAAQRLICLKYSNQDEESIRHALQN 618
++ A+ ++ ++ K E +R L K+ +++ ++L+ K + ++++ L+
Sbjct: 731 LDKAQEVSKALSLKIENQRKRSKTLAIAKRRKLILDLKEQLLQAKEGVLEGKALQAWLKK 790
Query: 619 LKESF 623
L++ F
Sbjct: 791 LQQEF 795
>gi|111380648|gb|ABH09701.1| MSH4-like protein [Talaromyces marneffei]
Length = 630
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 182/627 (29%), Positives = 324/627 (51%), Gaps = 79/627 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID ++ +LE+I+ L A + LF +L T+T G+RLLR N+LQP
Sbjct: 2 IDLSTAASLELIQNLQKA-----KSRDCLFGLLNETQTPMGSRLLRTNILQP-------- 48
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
P E +++ +
Sbjct: 49 --------------------------PTEQEKIAARY----------------------- 59
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLAN-IYRSVCENEKYASIRKRIGEVIDEDVLH 181
++ L T D + + LK+ F+ A+ + S C Y I+ I E +++DV++
Sbjct: 60 -DAVEELSTKEDMFYAIREALKN---FIDADKVLTSACATGNYELIKNAIDETLNDDVVY 115
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
R P R Q+ +A+K G++ LLD+AR+++ +++ L + E L L+L ++
Sbjct: 116 QRKPLDLRNQRTYAVKTGVNSLLDVARQAYKESNADAAELVSVLSERHNL-TLELKYDTA 174
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
+ +Y+S+ +++G LP FI V+K + I C TL+L LN R + E ++ ++
Sbjct: 175 RSYYISLSAFELEGALPDEFINVIKRRDRIECQTLDLVKLNQRIADSHHEVISMSDQAVQ 234
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
L++ I E V L ++E + LDM+ ++FAH ++ + Y RP T+ LAI GRH
Sbjct: 235 ELLEKICEGVPSLFRISEAIATLDML-SAFAHLVT---IQEYVRPEITD--VLAIKSGRH 288
Query: 362 PILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
P+ E I D F+PN+ + S+ + I+TG NMSGKSTY++ + L I+A IGC+VPA ++
Sbjct: 289 PLHEKILKDKFVPNDTYASQQSRFQIITGCNMSGKSTYIRSIALTAIMAHIGCFVPADYA 348
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
+ ++ ++F R TVD + ++ STF EM+E +++++NV RSL+++DELGR TS++DG
Sbjct: 349 SFPIIHQLFARAATVDEINASVSTFAGEMREISYILRNVDGRSLVIVDELGRGTSTTDGL 408
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI--RNNRLDFKFQLKD 538
AIA + E L+ A+ FA+H +L+ + V L V + ++++ +++++
Sbjct: 409 AIAIAIAEALVDSHAFVWFATHFRDLACIMAERSGVINLSLAVKLSHESSKMTMLYKIQE 468
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-KEVKRMEINCL-QYKQIQMLYHAA 596
G YGL LA+V P V+E A+ +++ + + E + + L ++ ++
Sbjct: 469 GHVQEKFYGLALAKVLPFPPQVLEVAQQVSTHLYRIAEDRAISSKVLGASRKRNLVLQLR 528
Query: 597 QRLICLKYSNQDEESIRHALQNLKESF 623
++L+ N D E +R L+ L++ F
Sbjct: 529 EQLLQAHNGNIDGEDLRQWLKRLQDDF 555
>gi|307177153|gb|EFN66386.1| MutS protein-like protein 4 [Camponotus floridanus]
Length = 1066
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 201/582 (34%), Positives = 311/582 (53%), Gaps = 40/582 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTK---TIGGTRLLRANLLQPLKDIE 59
ID S R+LE++ S K ++ +L T T G RLLRA++LQP D
Sbjct: 191 IDIESARSLELV---------VSQSKHTIVSLLGTMDRCLTPMGRRLLRASILQPSCDER 241
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I R C+ EL+++ L L +++ TDR+L KP V D+ NA+++
Sbjct: 242 LILDRQSCVAELVADRSLCTSLQPVVQRL-FGTDRLLT-LAIKPLHVN----DIQNAERN 295
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ +LLK+ LD +P L +L + + +++ +N ++ ++ +I +I D
Sbjct: 296 ---LNYALLLKSCLDIVPELEAILANGIHPFFVKMRKNL-KNSEFQVMKDKILTLIHADA 351
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ Q+CFAIK I+ LLD+AR+ +C+ + N+ + + KLP L L +N
Sbjct: 352 KFVKGCISLSMQRCFAIKADINELLDVARQIYCELISDMKNMVEQLAIKYKLP-LSLEYN 410
Query: 240 NRQGFYLSIPHKD----IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
G+++++ I LP+ FIQ K+ ++ +T L +LN + K A E Y+
Sbjct: 411 ANLGYHINVVTPQNMNMIISDLPAEFIQARKNRRSLTMTTTALLTLNKQCKKACEEVYVM 470
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ L L++ IR+ V L L+ + LD+I+ S A IS+ P Y RP F L
Sbjct: 471 SNTLLTYLLEDIRQHVGCLFQLSADVAELDLIL-SLAQ-ISSNP--EYVRPSF--GTKLE 524
Query: 356 IDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
+ HPI+E + D + N++ S N ++TGPNMSGKSTYL+Q+ L+ I+AQIG Y
Sbjct: 525 LVNSFHPIMELFNRDLPVANDVNASIPYNFHLITGPNMSGKSTYLKQIVLLQIMAQIGSY 584
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA +T R+ DRI RM + D+ E N+S F+ EMKE +++Q+V+ RSL+V+DEL R T
Sbjct: 585 VPATKATFRIADRILCRMSSRDDAELNASAFVLEMKEAQYILQSVTPRSLVVLDELCRHT 644
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI----RNNRL 530
+ +G +IAWS CE LL A+T A+H +L+ L +Y NV F +N L
Sbjct: 645 TVEEGSSIAWSICEKLLLTTAFTFAATHFLHLTALRNMYHNVTTHCFETKTAESEESNEL 704
Query: 531 DFKFQLKDGPRHVP--HYGLLLAEVAGLPSTVIETARSITSR 570
+ K P P HYG+ LAEV+ LP V AR S+
Sbjct: 705 HLIYTHKLNPGVGPTDHYGISLAEVSSLPKCVTIKARKFASQ 746
>gi|170100336|ref|XP_001881386.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644065|gb|EDR08316.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 835
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 176/595 (29%), Positives = 310/595 (52%), Gaps = 54/595 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLE++ + S + SLF L T T +RLLR N+L P+ ++
Sbjct: 215 MMVDPDTARNLELVGNMTS-----KRSQHSLFGTLNHTHTAMASRLLRVNILSPITVQQS 269
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDN----A 116
I+ RLD + E ++ E F + L+ K +D D +
Sbjct: 270 IDARLDVVQEFINTEDRFTNVRDALKTLNK--------------------MDFDKLILAS 309
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
+++ +S ++ L++ + LPLL L ++S LL I + +E+ I + ++
Sbjct: 310 SETRARLSQVLNLRSVVKNLPLLRNALAGSRSQLLV-IVHDMLADERLDEIEALVSANLN 368
Query: 177 EDVLHARV---PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
+D + A+V A + +A+K + LLD+AR ++ + ++ L+ EE LP
Sbjct: 369 DDCVPAKVIQGGVGAVNARVYAVKANCNRLLDVARETYKENVGDIYQLSRTVSEEHSLP- 427
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
L L + GF ++ D+ G+LP F+ V +++EL +N R K A E
Sbjct: 428 LTLVYKE-SGFVFALKKADLDGELPKGFLNVTFTKGRWMFTSMELKKMNARMKDALDETM 486
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTK---PVDRYTRPHFTE 350
+ ++ ++ LV I + L +E + L+DM+ SFAH +K VD++T
Sbjct: 487 LLSDKIIQDLVAGIVALIGALYKASEAVALVDMLW-SFAHASISKCHFRVDQFT------ 539
Query: 351 NGPLAIDGGRHPILESIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
G LAI GRHPI+E++++ + N+++ ++++ I+ GPNMSGKSTYL+Q+ L+ ++
Sbjct: 540 -GTLAIKSGRHPIMETLYHAGTLVSNDVYCDDSSSFQIIQGPNMSGKSTYLRQIGLLTVM 598
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
A GC+VPA +++ R+ D I TR+ D++E N STF +EM +A ++ +++SL+++D
Sbjct: 599 AMCGCFVPAEYASFRIHDAILTRLSNDDDMEKNLSTFASEMTTSAMILGLATQKSLVLVD 658
Query: 469 ELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV----- 523
ELGR TS +G I+ + E LL LK++ FA+H ++ + P + LH V
Sbjct: 659 ELGRGTSPREGVGISHAIAEGLLELKSFVFFATHFHEITITLSRRPTIVNLHLSVQRARQ 718
Query: 524 VIRNNRLDFKFQLKDG-PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
N L F+++++DG + HYGL LA +A LP+ V+ + + + + +
Sbjct: 719 SSSNFGLTFQYKIRDGISDEISHYGLELARLADLPADVLTEGKRVAEHLAALQTR 773
>gi|33519234|gb|AAQ20790.1| MutS homolog 4 variant gamma [Mus musculus]
Length = 422
Score = 275 bits (702), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 161/418 (38%), Positives = 260/418 (62%), Gaps = 25/418 (5%)
Query: 218 VHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQG----KLPSTFIQVVKHGNNIHC 273
+ LA KY LP L+ F++ +GF++ + D +LPS FI++ K N+
Sbjct: 2 IAQLAEKY----SLP-LRTSFSSSRGFFIQMT-TDCAALSSDQLPSEFIKISKVKNSYSF 55
Query: 274 STLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAH 333
++ +L +N R + + E Y T + + L+ I E + L L++ + +LDM++ SFAH
Sbjct: 56 TSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHGLYKLSDTVSMLDMLL-SFAH 114
Query: 334 TISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNM 392
+ + Y RP FT+ LAI G HPILE I + + NN +I+E +N++I+TGPNM
Sbjct: 115 ACT---LSDYVRPEFTDT--LAIKQGWHPILEKISAEKPVANNTYITEGSNVLIITGPNM 169
Query: 393 SGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKET 452
SGKSTYL+Q+ L I+AQIG YVPA +++ R+ +IFTR+ T D++E+NSSTFM EMKE
Sbjct: 170 SGKSTYLKQIALCQIMAQIGSYVPAEYASFRIAAQIFTRISTDDDIETNSSTFMKEMKEI 229
Query: 453 AFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512
A+++ N +++SLI++DELGR T++ +G I+++ CEHLLS+KA+T+F +H L L +
Sbjct: 230 AYILHNANDKSLILIDELGRGTNTEEGIGISYAVCEHLLSIKAFTLFTTHFLELCHLDAL 289
Query: 513 YPNVKILHFYV-----VIRN-NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
Y NV+ +HF V RN + + + ++L G +YGL AE + LPS+++ AR
Sbjct: 290 YLNVENMHFEVQHVKNTSRNKDAILYTYKLSRGLTEEKNYGLKAAEASSLPSSIVLDARD 349
Query: 567 ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDE-ESIRHALQNLKESF 623
IT++IT++ ++ + +Q + +YH A RL+ ++Q E + +R L NLK+ +
Sbjct: 350 ITTQITRQILQNQRSSPEMDRQ-RAVYHLATRLVQAARNSQLEPDRLRTYLSNLKKKY 406
>gi|303323973|ref|XP_003071974.1| MutS domain III family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240111684|gb|EER29829.1| MutS domain III family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 819
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 147/429 (34%), Positives = 253/429 (58%), Gaps = 11/429 (2%)
Query: 154 IYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCD 213
I ++C+ +Y I + ++ DV + P R Q+ +A+K G++ LLD+AR+++ +
Sbjct: 288 ILTALCDPSQYEVIESLLDSTLNADVSYQSRPLDLRNQRTYAVKAGVNSLLDVARQTYKE 347
Query: 214 TSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIH 272
+ V+ LA+ E L +L L F + +Y +P D++ K LP FI V + + +
Sbjct: 348 ANTDVNELASHLTEAHNL-SLDLRFETARQYYFRLPVSDLEEKQLPGVFINVFRKRSYLE 406
Query: 273 CSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFA 332
TL+L LN + + E ++ ++ L++ +R ++SVL ++E L +LDM+ ++FA
Sbjct: 407 FQTLDLVKLNQKITDSHNEVIAMSDKSVQELIEDVRSEISVLFRISEGLAMLDML-STFA 465
Query: 333 HTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIH-NDFIPNNIFISEAANMVIVTGPN 391
+ V Y RP T+ LAI GRHPI E IH N FIPN+ + ++ + IVTG N
Sbjct: 466 RLVV---VHDYVRPELTDT--LAIKAGRHPIREKIHSNKFIPNDAYATQQSRFQIVTGCN 520
Query: 392 MSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKE 451
MSGKSTY++ + L+ ++AQIGC+VPA +++ +V ++F R+ DN E+N STF EM+E
Sbjct: 521 MSGKSTYIRSIALMSVMAQIGCFVPAQYASFPIVTQLFARISADDNTEANISTFSAEMRE 580
Query: 452 TAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511
AF+++N+ RS+ ++DELGR TS+ DG +IA + E L+ A FA+H +L+ +
Sbjct: 581 MAFILRNIGPRSMAIVDELGRGTSTVDGLSIAIAISEALVDSHALVWFATHFTDLARIMA 640
Query: 512 IYPNVKILHFYVVIR--NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
V LH V + +++ +++ DG HYGL LA++ P+ +++TA++++
Sbjct: 641 HRNGVVNLHLAVEMSAPTSKMTMLYKIADGYVKEKHYGLSLAKLMPFPAKILQTAQTVSE 700
Query: 570 RITKKEVKR 578
++ + KR
Sbjct: 701 ELSLRATKR 709
>gi|299755255|ref|XP_002912083.1| hypothetical protein CC1G_13616 [Coprinopsis cinerea okayama7#130]
gi|298411140|gb|EFI28589.1| hypothetical protein CC1G_13616 [Coprinopsis cinerea okayama7#130]
Length = 797
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 182/587 (31%), Positives = 306/587 (52%), Gaps = 40/587 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRS---LFHMLKTTKTIGGTRLLRANLLQPLKD 57
M ID + RNLE+I G K+S LF +L T T +RLLR N+L P+
Sbjct: 175 MMIDRDTARNLELI--------GNMTFKKSPHSLFGVLNHTYTAMASRLLRVNILSPITV 226
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNA 116
+I+ RLD ++EL+++E F + L+ K + D+++ +S+ + +A
Sbjct: 227 QPSIHARLDSVEELINSEDRFNYVRDALKALNKMDLDKLIISLA------SSEARETSSA 280
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE---NEKYASIRKRIGE 173
K + +S ++ L+ + +PLL L+ +S LL R +C+ +E+ I++ +
Sbjct: 281 KMASQRVSQMLNLRNIVAQIPLLRTALQGCRSQLL----RIICDMIADERLEIIQQLVNA 336
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
++E+ A+ A + +A+K + LLD+AR ++ + ++ L + LP
Sbjct: 337 NLNEETTPAKGGIGAVNARVYAVKANQNRLLDVARETYKENIGDIYQLNRSLSQTHDLP- 395
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
L L + + GF S+ ++G+LP F+ V S +EL +N R K A E
Sbjct: 396 LTLVYQDATGFVFSLKKDQLEGELPEGFLNVTSKKGKYMFSCMELKKMNARLKDALDETL 455
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ ++ ++ L I V L +E + L+DM+ SFAHT K Y RP FT G
Sbjct: 456 LLSDKIIQDLAAQIVHHVGALYKASEAIALVDMLW-SFAHTSIIK---NYIRPEFT--GT 509
Query: 354 LAIDGGRHPILESIH--NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
LAI GRHPILE++ + N+ + +++ I+ GPNMSGKSTYL+Q+ L+ ++A
Sbjct: 510 LAIKSGRHPILETVQAAGTVVANDFYCDASSSFQIIQGPNMSGKSTYLRQIGLLTVMAMC 569
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
GC+VPA +++ ++ D + TR+ D+ E + STF EM +A ++ + SL+++DELG
Sbjct: 570 GCFVPAEYASFKIHDALLTRLSNDDDPEKSLSTFANEMSCSAMILGLATPNSLVLIDELG 629
Query: 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIR 526
R TS +G I+ + E L+ K Y FA+H L+ + P+V LH V
Sbjct: 630 RGTSPKEGVGISHAIAEALIEAKPYVFFATHFPELATTLSRRPSVVNLHLSVQRTRQTTS 689
Query: 527 NNRLDFKFQLKDG-PRHVPHYGLLLAEVAGLPSTVIETARSITSRIT 572
N + F++++ DG HYGL LA +A LP V+ A+ + +++
Sbjct: 690 NFGMAFRYKILDGVSDQNTHYGLELARLADLPPDVLTEAKRVAEQLS 736
>gi|403161199|ref|XP_003321582.2| hypothetical protein PGTG_03119 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171163|gb|EFP77163.2| hypothetical protein PGTG_03119 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 796
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 197/605 (32%), Positives = 314/605 (51%), Gaps = 61/605 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID + +LE+I ++A+ +S K+SLF +L T T RLLR+NLL P +IE
Sbjct: 184 MLIDRNTALDLELI---NNAV--SSKSKQSLFGLLNHTYTPMANRLLRSNLLAPPTEIEV 238
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I+ RLD + EL+ E FF L + L+ + + D+++ + S L + + S
Sbjct: 239 IDGRLDAVQELIELEDSFFNLRKSLKLLTQIDLDKLI-------GGINSTELASNRSNPS 291
Query: 120 QTLISSIILLK---TALDALPLLAKVLKDAQSFLL---ANIYRSVCENEKYASIRKRIGE 173
+ + LLK T L +L + L S LL +NI+ +E + + R+ E
Sbjct: 292 LAITKKLELLKSLRTILQSLNPIRSALSTCSSELLRLASNIFEDPFLDEISSVLELRVNE 351
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDG-LLDIARRSFCDTSEAVHNLANKYREELKLP 232
D + + + +AIK G++ LL++AR ++ + + +EE LP
Sbjct: 352 --DSFLGVQKGSLAKQNVHAYAIKTGVENQLLNVARETYKENLSDAMAMCEALKEEHHLP 409
Query: 233 NLKLPFNNRQGFYLSIPHKDIQGK----------LPSTFIQVVKHGNNIHCSTLELASLN 282
L+ F R GF L I D++G LP F +VK G +H + L+L N
Sbjct: 410 KLQFIFETRAGFMLQIKKDDLRGTSNDTTDHPDGLPKVFTNIVKKGKTLHFTCLDLKKKN 469
Query: 283 VRNKSAAGECYIRT--EICLEALVDAIRED----VSVLTLLAEVLCLLDMIVNSFAHTIS 336
+ I + EICL ++D I E+ VS L+E + LLDM+ SFAH S
Sbjct: 470 --------QLIINSYQEICLLRVLDGIFEEFKKRVSTFFRLSEAIALLDMLA-SFAHVAS 520
Query: 337 TKPVDRYTRPHFTENGPLAIDGGRHPILE---SIHNDFIPNNIFISEAANMVIVTGPNMS 393
T+ Y RP FT+ LAI GRHPI E S ++F+PN+ + +E+ + +VTGPNMS
Sbjct: 521 TR---EYVRPEFTDT--LAISDGRHPIKELFDSESDEFVPNDTYANESCSFQLVTGPNMS 575
Query: 394 GKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETA 453
GKS +L+Q+ L+V++AQ+G + PA +++ + D + T + D++E+ STF +EMK +
Sbjct: 576 GKSIFLRQIALMVVMAQVGSFCPAKYASFPIFDALLTCLSKNDDIEAGLSTFSSEMKTLS 635
Query: 454 FVMQN--VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511
++ + V SLI++DELGR TS +G IA + E ++ K++ FA+H LS +
Sbjct: 636 GILSSMAVCRNSLIIIDELGRGTSPLEGVGIAHAFSEEIIKAKSFCFFATHFRELSLTLS 695
Query: 512 IYPNVKILHFYVVIRNNR----LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+YPNV LH ++ L F ++ G YG+ LA +A LP V+ A+ I
Sbjct: 696 VYPNVACLHLETILSKQEAAVGLKFPHKVLGGTVKNGGYGIELASIAALPHDVMSRAKQI 755
Query: 568 TSRIT 572
+ ++
Sbjct: 756 SEEMS 760
>gi|440462670|gb|ELQ32671.1| MutS protein [Magnaporthe oryzae Y34]
gi|440489846|gb|ELQ69459.1| MutS protein [Magnaporthe oryzae P131]
Length = 1074
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 199/649 (30%), Positives = 336/649 (51%), Gaps = 62/649 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S+ LE+++ + K+ LF +L T T G R LR+ +LQP E
Sbjct: 300 MMIDVASIHALELLQNSQNI-----KSKQCLFGLLNNTLTPMGARYLRSCILQPSTKKEI 354
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP--KETDRVLCHFCFKPK------KVTSKVLD 112
I R + ++EL S E +FF + + P + + VL C K +V SK L
Sbjct: 355 IAPRHEAVEELSSKEDMFFEVRKGKSSPPLFRTPNFVLTLPCVALKALPDIDRVVSKQLI 414
Query: 113 VDNAK----KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIR 168
V N +S+ I+ I+ +K+ L A+P L + L A+ +L + C + SI
Sbjct: 415 VTNTDESTIQSEQSINRILQIKSFLVAMPALYEALATARCEVLVKAQQQ-CLPQITNSIL 473
Query: 169 KRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREE 228
+ I + ID+D + A P R Q+ FA+K E NL Y E
Sbjct: 474 EMIDKQIDKDAVFASKPLEMRNQRTFAVKA---------------YKEQTDNL---YDNE 515
Query: 229 LKLPNLKLPFNNRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKS 287
++ +++ + F+L KD +PS I V++ + C T++L LN R
Sbjct: 516 IR-------YDDNRKFWLRFSLKDFDDTGIPSHLINTVRNKGYLECQTIQLNQLNSRISD 568
Query: 288 AAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
A+ E I++E +E+LV +R + LT L + + LDM+ SFA+ +S + Y RP
Sbjct: 569 ASCEVLIQSEKVVESLVKELRTQIPHLTRLCQAIGYLDMLA-SFAYLVS---ISDYCRPD 624
Query: 348 FTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
T +A+ RHPI+E +F+PN+ ++S+ + I+TG NMSGKSTY++ + ++ +
Sbjct: 625 MTST--VAMTSARHPIVEQCVANFVPNHYYVSDQYSFQIITGCNMSGKSTYIKTLAVLQV 682
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQIG +VPA ++++ +V +IFTR+ DN+ESN STF EM+E AF+++N+ RSL ++
Sbjct: 683 MAQIGSFVPAEYASLPIVHKIFTRISKDDNIESNLSTFSLEMREMAFILRNIDSRSLAII 742
Query: 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV---V 524
DELGR TS+ DG AIA + E L+ A +FA+H L+ + P+V H V
Sbjct: 743 DELGRGTSTRDGLAIAIAISEALIESGAQVLFATHFHELATVLNDRPHVVNQHLQAETSV 802
Query: 525 IRNN-----RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRM 579
+ + ++ ++ GP YG+ LA V G P + IE A+++ R+ + +
Sbjct: 803 VGDGPDAKPKITMIHKIAKGPLKDDSYGIDLARVIGFPPSFIENAQNLAERLRRNAAAKK 862
Query: 580 EINCLQYKQIQ---MLYHAAQRLICLKYSNQDEESIRHALQNLKESFID 625
+ + Q++ ++ ++ + + LI + S+ D+ ++ L+ L+ F++
Sbjct: 863 Q-SSDQHRLMRRRALVTNLRELLIQARDSHMDDSALLTLLKRLQVDFVN 910
>gi|403417000|emb|CCM03700.1| predicted protein [Fibroporia radiculosa]
Length = 817
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 187/627 (29%), Positives = 313/627 (49%), Gaps = 79/627 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRS---LFHMLKTTKTIGGTRLLRANLLQPLKD 57
M ID + RNLE+I G ++ K+S LF + T T G RL+R N+L P+
Sbjct: 214 MMIDPETARNLELI--------GNASYKKSSHSLFGLFNHTHTAMGARLIRTNILAPITV 265
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNA 116
+I RLD ++EL+ E F + Q L+ K + D+++C +S+ + A
Sbjct: 266 HSSIEARLDAVEELVQTECCFNDVKQALKTLNKIDLDKLICSLA------SSEAREASTA 319
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
K + ++ ++ L+ ++ LP +AK L+ ++S +L I + +++ + I + I E ++
Sbjct: 320 KPAAARVAQMLNLRNIVNVLPGIAKALEGSRSQML-RIIAEMVSDDRLSKIERLICESLN 378
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
ED A+ A + +A+K + LLD+AR ++ + + L + LP + L
Sbjct: 379 EDATPAKGGLGAINARVYAVKANFNRLLDVARETYKENVGDIFALNRDLSHQHNLP-ITL 437
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+ GF ++ D+ G+LP F+ V K S+LEL N R K A E I +
Sbjct: 438 -ISQDAGFVFALKKDDLDGELPRGFLNVNKQKGRWLFSSLELKKRNARMKDALDETLILS 496
Query: 297 EIC----LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
+ ++ L I D+ L +E + +LDM+ FAH RP FT G
Sbjct: 497 DSTSDRIIQELTAEIILDIGALYKASEAVAILDMLW-CFAHV-------SILRPEFT--G 546
Query: 353 PLAIDGGRHPILESIH--NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
LAI GRHP+LES+ +PN+ + EA++ +V GPNMSGKSTYL+Q+ L+ +A
Sbjct: 547 TLAIKAGRHPVLESVQAAGTLVPNDAYCCEASSFQVVQGPNMSGKSTYLRQIGLLTTMAM 606
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
GC++PA + + R+ D + TR+ D++E + STF EM +A ++ + SL+++DE+
Sbjct: 607 CGCFIPAEYGSFRLHDALLTRLSNDDDMEKSLSTFSNEMASSAMILGIATADSLVLIDEV 666
Query: 471 GRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR- 529
GR TS S+G I+ + E L+ +K I+H ++ ++ +R
Sbjct: 667 GRGTSPSEGVGISHAIAEELIKIKP---------------------SIVHLHLAVQRSRR 705
Query: 530 ------LDFKFQLKDG-PRHVPHYGLLLAEVAGLPSTVIETARSIT-------------S 569
+ F++++ DG P + HYGL LA +A LP V+ R I S
Sbjct: 706 TNSNFGMTFQYRIVDGAPEDMSHYGLELARLADLPEDVLVEGRRIAENLTALHAKEEQES 765
Query: 570 RITKKEVKRMEINCLQYKQIQMLYHAA 596
R K ++R + L+ + Q L H+A
Sbjct: 766 RTNKVAIRRKALLRLRTQLTQALNHSA 792
>gi|393219017|gb|EJD04505.1| hypothetical protein FOMMEDRAFT_83663 [Fomitiporia mediterranea
MF3/22]
Length = 864
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 191/627 (30%), Positives = 319/627 (50%), Gaps = 57/627 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S +NLE+ + S SLF +L T T G+RLLR NLL P+ +
Sbjct: 224 MLIDNDSAKNLELAGNMLS-----RKSPHSLFGILNHTWTAMGSRLLRVNLLAPITAHDA 278
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I RLD ++EL+ E F + LR K + D+++ + + + +K +
Sbjct: 279 IEARLDAVEELVQTEDKFSAIKDALRTVNKLDLDKLISSLAASEARTS------NGSKAA 332
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED- 178
+ +S ++ L++ + +P++ +K +S LL I + +E+ I I +++D
Sbjct: 333 SSRVSQMLQLRSVIRNIPVVRDAVKGCRSRLL-EIVCDMLSDERIEHIESLITRSLNDDA 391
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+L+ A + +A+K + LLD+AR ++ + + L E+ LP L+L
Sbjct: 392 MLYKGAGLTAVNARVYALKANQNCLLDVARETYKENISDIFQLNRDLSEQHGLP-LQL-I 449
Query: 239 NNRQGFYLSIPHKDIQ----GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
+ GF ++ + +++ +LP FI +++L N R K A E +
Sbjct: 450 HQEHGFAFTLKNSELEEAGLTELPKCFINATARKGKWFFESMDLKKRNARMKDALDETLL 509
Query: 295 RTEICLEALVDAIREDVSVLTLLAEV--LCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
T+ ++ +V + D L +E + LLDM+ SF H RP FT G
Sbjct: 510 LTDKTIKEIVAEVMVDAGALYKSSEAAKIALLDMLW-SFVHA-------SILRPEFT--G 559
Query: 353 PLAIDGGRHPILESIHND--FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
LAI GRHP LE + + + N+++ EA++ ++ GPNMSGKSTYL+QV L+ ++A
Sbjct: 560 TLAIKAGRHPTLEKVQSAGALVANDVYCCEASSFQLIQGPNMSGKSTYLRQVALLTVMAM 619
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
GC+VPA +++ ++ D + TR+ D++E N STF EM +A ++ S SLI++DEL
Sbjct: 620 CGCFVPAEYASFKIHDCLLTRLSNDDDIERNLSTFAEEMSSSAMILGLASGDSLIIVDEL 679
Query: 471 GRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR- 529
GR TS +G IA + E L KAY FA+H L+ + P+V LH V + +R
Sbjct: 680 GRGTSPREGVGIAHAIAERLCKSKAYVFFATHFSELAVTLSRQPSVVNLHLSV--QKSRP 737
Query: 530 ------LDFKFQLKDG-PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE------- 575
L F++++ DG P ++ HYGL LA +A LP V+ AR ++SR+++ E
Sbjct: 738 SSSSMGLSFRYKVVDGAPDNIEHYGLELARLADLPEDVLTEARRVSSRLSEMETNNKQQC 797
Query: 576 ------VKRMEINCLQYKQIQMLYHAA 596
++R + L+ + Q L+H+A
Sbjct: 798 EGNQVAIRRKAMLRLRTQLTQALHHSA 824
>gi|219117886|ref|XP_002179729.1| muts-like protein 4 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408782|gb|EEC48715.1| muts-like protein 4 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1191
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 202/663 (30%), Positives = 325/663 (49%), Gaps = 108/663 (16%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ LE++ T K SL + TKT G+RLLR NL+ P I T
Sbjct: 359 MAIDRSTLLQLELLMNAK-----TGKLKDSLVGSIDCTKTTVGSRLLRTNLMSPPTQIAT 413
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK-- 118
I+ R + +D + NE F+ + + L P + DR+L H P+ + K + +D ++
Sbjct: 414 IHARQELVDTFLGNEAFFYDVMEHLMNLP-DVDRMLNHIALVPR-LDCKDMGMDGHQRQR 471
Query: 119 ---SQTL----ISSIILLKT---ALDALPLLAK--------------------------- 141
SQ L IS+++ +K+ AL AL + K
Sbjct: 472 PAVSQRLASKGISALVAIKSTLKALPALVQILKNQLESTTGAMRQTEKEISTVQQINSPN 531
Query: 142 -------VLKDAQSFLL-------ANIYRS-VCENEKYAS-----------------IRK 169
++ D S L+ ++++ + E+ +Y+S + K
Sbjct: 532 DEDENTTIVTDRSSLLIGLGGCNSSSLHSAHTIESRRYSSHLLRAIIFSLNQPAFNEVHK 591
Query: 170 RIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEL 229
I +V E + R P R Q+CFA++ DG++ I R++F + ++ A++Y E
Sbjct: 592 AILDVFTESTAYTRNPNAMRHQECFALRCESDGMMGILRKAFLANVDDIYRKADEYAEVY 651
Query: 230 KLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAA 289
+ +K+ + +G++L++P DI LP F Q G +IHC+T E+AS N R +
Sbjct: 652 GM-QVKVKYTASRGYFLAVP-SDIGTDLPLVFTQPTLLGRHIHCTTEEIASFNTRAQDNV 709
Query: 290 GECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAH-TISTKPVDRYTRPHF 348
+ + T ++ +++ R+ L++ + LLD+ H T+S P + RP
Sbjct: 710 QDILLMTHDKIQEVLNIGRQYFDAFAALSDAIALLDLCHGFADHVTLSESP---WCRPVL 766
Query: 349 TENGPLAIDG------------GRHPI------LESI--HNDFIPNNIFISEAANMVIVT 388
+E + +G GR+ I LES + +IPN+ F S+A ++T
Sbjct: 767 SEKAICSEEGSTDSECTMMIRSGRYAIAIEGHGLESADGSSGYIPNDTFASDAKPFTLIT 826
Query: 389 GPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTE 448
G N SGKSTYL+Q+ + +LA G YVPA + I + D I +R+G D+ E N STFM E
Sbjct: 827 GINGSGKSTYLKQIAICTVLAHCGSYVPAEQACIPIRDLICSRIGNTDDQEHNISTFMLE 886
Query: 449 MKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508
MKETAF+ + +ERSLI++DELGRATS+ DG AIAWS E+LL A T FA+H L
Sbjct: 887 MKETAFICNHATERSLILIDELGRATSNEDGVAIAWSIAEYLLKKGAMTFFATHYPQLCR 946
Query: 509 LATIYPNVKILHFYVVIRN---NRLDFKFQLKDGPRHVP-HYGLLLAEVAGLPSTVIETA 564
L +Y V+ +H + N +++ + ++ G V YG+ LA V G P V+ A
Sbjct: 947 LGDVYLKVQNVHLEASVSNGERSQIYYTHRVVSGTCAVSTDYGVELASVCGWPQEVVTAA 1006
Query: 565 RSI 567
++I
Sbjct: 1007 KTI 1009
>gi|449550431|gb|EMD41395.1| hypothetical protein CERSUDRAFT_41819 [Ceriporiopsis subvermispora
B]
Length = 832
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 193/640 (30%), Positives = 324/640 (50%), Gaps = 50/640 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S RNLE+IE + SLF +L T T G RLLR N+L P+
Sbjct: 214 MMIDPESARNLELIEN-----AAGKKSRHSLFGLLNHTYTAMGARLLRVNILAPITVQAA 268
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I +RLD ++EL+ +E F + L+ K + D+++ +VT
Sbjct: 269 IESRLDVVEELIQSEARFSEVKNALKALNKLDLDKLISSVSSAAARVTQ----------- 317
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ L+ + +LP LA+ L +S LL I + +E+ I+ +G +++D
Sbjct: 318 ------MLQLRNVVQSLPRLAQALGGCRSELL-RIVAEMISDERLEKIKDLVGRSLNDDA 370
Query: 180 LHARVP--FVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
ARV A + +A++ + LLD+AR ++ + + + + + LP L+L
Sbjct: 371 APARVGGGLEATNARVYAVRANYNHLLDVARETYRENVGDIQMMHRELSQAYDLP-LRLI 429
Query: 238 FNNRQGFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
F + GF LS+ KD Q +LPS F+ V + T+ + N R K A E I +
Sbjct: 430 FQD-NGFVLSLARKDAQDVELPSEFVNVRVKKGAVVFETMNIKKKNARMKDALDETLILS 488
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAH-TISTKPVDRYTRPHFTENGPLA 355
+ ++ L I D+ L +E + LLD ++ SFAH +I T R+ RP FT G LA
Sbjct: 489 DKIIQDLTAKILVDIGALYKASEAVALLD-VLWSFAHASIRTH---RFFRPEFT--GTLA 542
Query: 356 IDGGRHPILESIH--NDFIPNNIFISEAANMVIVTGPN---MSGKSTYLQQVCLIVILAQ 410
I GRHP+LE++ + N+++ +A++ +V + + GKSTYL+Q+ L+ ++A
Sbjct: 543 IKAGRHPVLENVQAAGSVVANDVYCCDASSFQVVPPIDTHGLPGKSTYLRQIGLLTVMAM 602
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
GC+VPA + + RV D + TR+ D++E + STF EM +A ++ + SL+++DE+
Sbjct: 603 CGCFVPAEYGSFRVHDALLTRLSNDDDMEKSLSTFANEMASSAMILGIATSNSLVLIDEV 662
Query: 471 GRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VI 525
GR TS +G IA + E L+ K++ FA+H L+ + P+V LH V
Sbjct: 663 GRGTSPREGVGIAHALAEELIKAKSFVFFATHFYELTTTLSRQPSVVNLHLSVQRTRQSA 722
Query: 526 RNNRLDFKFQLKDG-PRHVPHYGLLLAEVAGLPSTVIETARSITSRITK---KEVKRMEI 581
N + F++++ DG P HYGL L +A LP V+ AR + + +++ +E + +
Sbjct: 723 SNFGMTFQYRIVDGAPEDQAHYGLDLMRLADLPEDVLTEARRVATNLSELEAQEQRESQT 782
Query: 582 NCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKE 621
N + ++ +L Q L++S EE + L L++
Sbjct: 783 NKVAIRRKALLRLKTQLTQALEHSTLPEEDLVAYLARLQK 822
>gi|426193978|gb|EKV43910.1| hypothetical protein AGABI2DRAFT_187616 [Agaricus bisporus var.
bisporus H97]
Length = 847
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 179/589 (30%), Positives = 305/589 (51%), Gaps = 29/589 (4%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +V+NLE+++ + + S +LF L T T G RLLR N+L PL +
Sbjct: 227 MMIDPETVKNLELVKNVMN-----SKSSHTLFGSLNYTFTAMGGRLLRVNILSPLTGAQP 281
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
+ + L + E + NE F + + L+ K + D+++ + TS AK +
Sbjct: 282 VFSSLALVVEFVQNEDRFSDVREALKLLNKMDFDKLIASLASSEARPTS------TAKGA 335
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ ++ L+ + +P L + L ++S LL I + +E+ I + + ++E+
Sbjct: 336 FARVTQMLNLRNLVKYIPSLKRALAGSESQLL-RIVHEMISDERLTIIEQLVCANLNEET 394
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ A+ A + +A++ + LLD+AR ++ + ++ L +E +LP + L +
Sbjct: 395 IAAKGGIGAVNARVYAVRANCNKLLDVARETYKENVSDIYELNKMLADEHELP-ITLMYQ 453
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF + + G+ P FI V S++EL LN R K A E I ++
Sbjct: 454 G-GGFTFVLKKTPLIGEPPKGFISVSSRKGKWLFSSMELKKLNARMKDALDETLILSDKI 512
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ LV I ++ L +E + L+DM+ SF+H + Y RP FT G LAI G
Sbjct: 513 IQDLVSEIVTEIGALYKASEAVALVDMLW-SFSHASIMR---NYIRPEFT--GTLAIKSG 566
Query: 360 RHPILESIH--NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHPILE++ +PN+++ +A++ ++ GPNMSGKSTYL+Q+ L+ ++A G +VPA
Sbjct: 567 RHPILETVQAAGMLVPNDVYCDDASSFQVIQGPNMSGKSTYLRQIGLLTVMAMCGSFVPA 626
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+++ R+ D + TR+ D+LE + STF +EM +A ++ + SL+++DELGR TS
Sbjct: 627 EYASFRLHDCLLTRLSNDDDLEKSLSTFASEMTTSAMILGMATPMSLVLVDELGRGTSPR 686
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRNNRLDF 532
DG I+ + E L+ +K++ FA+H + L + P V LH V N L F
Sbjct: 687 DGLGISHAIAEALIVVKSFVFFATHYKELKTTLSRQPTVINLHLSVHQTRKTSSNFGLTF 746
Query: 533 KFQLKDGPRH-VPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
++++ DG HYGL LA +A LP VI AR + + + + E
Sbjct: 747 QYKIVDGASEDYGHYGLELARLADLPDDVITEARRVAEHLAQVHAQNEE 795
>gi|336378265|gb|EGO19423.1| hypothetical protein SERLADRAFT_442905 [Serpula lacrymans var.
lacrymans S7.9]
Length = 858
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 197/645 (30%), Positives = 325/645 (50%), Gaps = 84/645 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKK-RSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M ID + R+LE++ H+ TS K RSLF +L T T +RLLR N+L P+
Sbjct: 224 MMIDPETARSLELV---HNR---TSKKSSRSLFGILNHTYTAMASRLLRVNILAPITVQS 277
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
I+ RLD ++EL+ E F L+ K + D+++ S+ ++ K
Sbjct: 278 AIDARLDAIEELVQYEDKFSDTRDALKSLNKMDFDKLISSLA------ASEARPSNSPKF 331
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+ +S ++ L++ + LPLL K L +S LL+ I+ V + E+ + I K I + +++
Sbjct: 332 ASLRVSQMLNLRSFVRNLPLLQKALSGTRSQLLSIIHDMVSD-ERLSVIDKLIRDNLND- 389
Query: 179 VLHARVPFVARTQQCFAIKGGIDG---------LLDIARRSFCDTSEAVHNLANKYREEL 229
+ +KGG+ LLD+AR ++ + ++ L EE
Sbjct: 390 -------------EASPVKGGLTAVNARANRNHLLDVARETYKENVGDIYQLNTSLSEEY 436
Query: 230 KLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAA 289
LP L L + GF ++ +++G+LP FI V + S + L +N R ++A
Sbjct: 437 GLP-LTLVYQE-SGFVFALKKDELEGELPQEFINVSERKGRKLFSIMRLKQMNARMQAAL 494
Query: 290 GECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
E ++ ++ LV + D L +E + L+D++ SFAH V Y RP FT
Sbjct: 495 NETLNLSDKIIQELVTEVLGDAGALYKASEAIALVDLLW-SFAHA---SIVRNYVRPEFT 550
Query: 350 ENGPLAIDGGRHPILESIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
G LAI GRHPILE+ H+ +PN+++ ++++ IV GPNMSGKSTYL+Q L+ I
Sbjct: 551 --GTLAIKAGRHPILETTHSAGTLVPNDVYCCDSSSFQIVQGPNMSGKSTYLRQTGLLTI 608
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN--------- 458
+A GC+VPA +++ R+ D + TR+ D++E + STF EM +A ++ +
Sbjct: 609 MAMCGCFVPAEYASFRLHDALLTRLSNDDDMEKSLSTFANEMTSSAMILGHGVLYLTVPH 668
Query: 459 --------VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELA 510
+ R+L+++DELGR TS ++G ++ + E L+ +K + FA+H L+
Sbjct: 669 TNQRVLGIATPRTLVLIDELGRGTSPNEGIGVSHAIAEELIKMKCFVFFATHFAELATTL 728
Query: 511 TIYPNVKILHFYV-----VIRNNRLDFKFQLKDG-PRHVPHYGLLLAEVAGLPSTV---- 560
+ P V LH V N + F++++ DG P + HYGL LA +A LPS V
Sbjct: 729 SRQPTVVNLHLSVQKARQSTANFGMIFQYKIVDGLPEDMDHYGLELARLADLPSNVTTEG 788
Query: 561 ---------IETARSITSRITKKEVKRMEINCLQYKQIQMLYHAA 596
+E R S+ +K V+R + L+ + Q+L H+A
Sbjct: 789 KRVAEALVDLEARRKAESQSSKVAVRRRALLKLRTQLTQVLDHSA 833
>gi|299116021|emb|CBN76021.1| MutS protein homolog 4 [Ectocarpus siliculosus]
Length = 917
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 167/485 (34%), Positives = 258/485 (53%), Gaps = 49/485 (10%)
Query: 169 KRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREE 228
+R+ V+ + + R P R ++CFA++ +DG+LD+AR +F + E ++ A+ EE
Sbjct: 339 ERLDSVLTDSTSYTRNPAALRHEECFAVRADVDGMLDVARTTFLQSMEDIYRAADAMTEE 398
Query: 229 LKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSA 288
+K+ + +G++L IP LP IQ V++ I C+T E++SL+ R A
Sbjct: 399 HSY-QVKVSCSVSRGYHLIIPAGV---DLPPGLIQAVQNTKTIACTTEEVSSLSDRANEA 454
Query: 289 AGECYIRTEICLEALVDAIR-EDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
+ T ++ L D IR E + L + E + LLDMI FA ++ P+ + RP
Sbjct: 455 VRTALLITHDVIQTLADEIRTEALDALFAVTESVALLDMIFG-FADLVTLSPL-AFCRPE 512
Query: 348 FTENGPLAIDGGRHPILESIHND--FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405
T +GP++I GGRHPI+ ++ D F+PN+ ++S N +VTGPN SGKSTYL+Q LI
Sbjct: 513 VTADGPMSIRGGRHPIVGAVQEDWKFVPNDTYMSPFINFRVVTGPNNSGKSTYLKQAGLI 572
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
V++AQ+GCYVPA + I V + +R+GT D+LE+N STF+ EM+E A VM
Sbjct: 573 VLMAQMGCYVPAEMAVIPVRTSLLSRIGTGDDLENNVSTFLMEMREIAQVM--------- 623
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
+DELGR TS+ +G A+AW+ E LLS AYT+F +H + LA +YPNV+ +H +
Sbjct: 624 -IDELGRGTSNREGLAVAWAVAEKLLSSSAYTLFVTHYSQMPGLADLYPNVENIHLQTAL 682
Query: 526 R----------------------NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIET 563
+ LD + DG YG+ AE+ GLP ++E
Sbjct: 683 APAAAAAGATGGAGGQTGALRYLHKALDGRCDPGDG------YGIRTAEMCGLPWEIVEE 736
Query: 564 ARSI-TSRITKKEVKRMEINCLQYKQIQM-LYHAAQRLICLKYSNQDEESIRHALQNLKE 621
AR + T I + K ++ + + + Y + L LK S D ++R L L
Sbjct: 737 ARVLRTQVIDATKAKEIKGSAGAPSEAEKDAYELLRTLATLKGSTMDPIALREFLHVLSL 796
Query: 622 SFIDG 626
+ G
Sbjct: 797 EYGKG 801
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ + LE+I S +K+SLF ++ T+T G RLLR+ +L P DI T
Sbjct: 135 MYIDRSTAKELELITDARSG-----GQKKSLFGVINHTRTAVGARLLRSTILGPCTDIAT 189
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD + ++ E +F + L +F + DR+L PK+VT A +S
Sbjct: 190 IEERLDLVTFFLTMEGVFNSTLKVLGEF-TDLDRMLSDLVTVPKQVTPV-----TAGRS- 242
Query: 121 TLISSIILLKTALDALPLLAKVLKDA 146
I+++I L+ L + L + L++
Sbjct: 243 --IATLICLRHTLRLMAPLVQALEEG 266
>gi|325295187|ref|YP_004281701.1| DNA mismatch repair protein mutS [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065635|gb|ADY73642.1| DNA mismatch repair protein mutS [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 842
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 194/577 (33%), Positives = 302/577 (52%), Gaps = 61/577 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + +NLE+IEP+ L S LF +L TKT G RLL+ +L PLKD + I
Sbjct: 249 LDPQTQKNLELIEPIAGKLESAS-----LFGVLNKTKTGMGRRLLKFWILHPLKDKKEIE 303
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPK--ETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
RLD ++EL + FF + L K + +R+L K+TS + +
Sbjct: 304 ERLDAVEELKDS---FFVADEILELLSKVYDIERLLS-------KITSGIAS------PR 347
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSV-------CENEKYASIRKRIGE 173
L S + +L LP L K+L D +S LL+ IY++ CE E+
Sbjct: 348 DLAS----FRNSLGVLPDLKKLLADFKSSLLSQIYKNFDDLYDIYCELER---------- 393
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
VL PF +R + IK G++ LD RR + + + + + R+ + +
Sbjct: 394 -----VLVENPPFTSR--EGGLIKEGVNPELDELRRIKNEGEKILKEIEERERKRTGISS 446
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC- 292
LK+ FNN G+Y+ + ++ +P +I+ N T EL + SA
Sbjct: 447 LKIGFNNVFGYYIEVSKANLH-LVPENYIRRQTLVNAERFITPELKEFEEKILSAQERIE 505
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
I ++ +E L + ++ ++ AE + +D+++ SF+ + + YT+P TE
Sbjct: 506 KIEYQLFVE-LRKFVSKNADRISKTAEKIATIDVLL-SFSKIANERG---YTKPRVTEGY 560
Query: 353 PLAIDGGRHPILES-IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
+ I G+HP+LE + DFIPN+ ++E ++IVTGPNM GKS +L+Q LI I+AQI
Sbjct: 561 SIKIKNGKHPVLEKFLEEDFIPNDTELTEKEFILIVTGPNMGGKSVFLRQTALITIMAQI 620
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + I +VDRIF+R+G DNL STFM EM ETA ++QN +RSLI++DE+G
Sbjct: 621 GSFVPAEEAEIGIVDRIFSRVGAADNLSKGLSTFMMEMVETANILQNAGKRSLIILDEIG 680
Query: 472 RATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS+ DG +IA + E++ + A T+FA+H L+EL VK H V + ++
Sbjct: 681 RGTSTYDGMSIAKAVVEYISGKVGAKTLFATHYHELTELEGKVKGVKNFHVTVEEIDEKI 740
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
F ++ G YG+ +AE+AGLP VI+ A+ I
Sbjct: 741 VFTHKVLPGASE-KSYGIHVAELAGLPKEVIDRAKEI 776
>gi|391870952|gb|EIT80121.1| mismatch repair ATPase MSH4 [Aspergillus oryzae 3.042]
Length = 845
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 181/632 (28%), Positives = 331/632 (52%), Gaps = 63/632 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ L +A K SLF ++ + T G RLLRAN+LQP ++
Sbjct: 190 MLIDLSTIVSLELIQNLQNA-----RSKDSLFGLMNESLTPMGGRLLRANILQPSTEVSK 244
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++ R D +++L + ++F + Q E R L P K T + ++
Sbjct: 245 LSARYDAVEDLFTKGEMFVSIRQ------GEKHRSL--LILVPTKRTFQYVEQS------ 290
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++++I+LKT L C + ++ + I ++E V
Sbjct: 291 --VNNVIMLKTYL-------------------------CAPAGHRAVEELIESTLNEYVT 323
Query: 181 HARVPFVARTQQCF----AIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
+ P R Q AI+ G++ LLD+AR+++ + + +L K E + L L
Sbjct: 324 YQTRPLDLRNQLRLSDNPAIQAGVNSLLDVARQTYKEANMDAADLITKLSESHGIA-LDL 382
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
F+ + +Y++I ++ LP FI + + N I C TL+L +N + A E +
Sbjct: 383 KFDTARQYYINISATEV-NTLPEVFINIYRKKNRIECQTLDLVKMNQKIIDAHNEVINMS 441
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ + L++ IR +++ L ++E + +LDM+ ++FA + Y R T+ LAI
Sbjct: 442 DQTVHELIEDIRSEIAHLFKISEAIAMLDML-SAFAQLATNYD---YVRAELTD--VLAI 495
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHPI E IH FIPN+ + ++ ++ ++TG NMSGKSTY++ + L+ I+AQIG ++
Sbjct: 496 KSGRHPIREKIHTKKFIPNDAYATQQSHFQVITGCNMSGKSTYIRSLALMTIMAQIGSFI 555
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ +V ++F R+ T D+LE+N STF EM+E AF+++N+ RS++++DELGR TS
Sbjct: 556 PAEYACFPIVHQLFARVSTADDLEANVSTFAAEMREMAFILRNIESRSMVIVDELGRGTS 615
Query: 476 SSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFK 533
++DG AIA + E L+ A F +H +L+ + V LH I +++
Sbjct: 616 TTDGLAIAIAIAEALVESHALVWFVTHFHDLAVVMAERSGVVSLHLAAEISPDTSKMTML 675
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN--CLQYKQIQM 591
+++ +GP YGL LA++ LP V+E A++++ ++ + +R + ++ +
Sbjct: 676 YKIAEGPETNRSYGLALAKLVDLPPGVLEYAQTVSEKMNQIAQRRHSKSRALAVSRKRNL 735
Query: 592 LYHAAQRLICLKYSNQDEESIRHALQNLKESF 623
+ ++L+ + + E++R L+ L++ F
Sbjct: 736 ILSLKEQLLQARDGKLEGETLRKWLKRLQDEF 767
>gi|409077978|gb|EKM78342.1| hypothetical protein AGABI1DRAFT_121449 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 877
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 180/598 (30%), Positives = 309/598 (51%), Gaps = 38/598 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +V+NLE+++ + + +LF L + T G RLLR N+L PL ++
Sbjct: 248 MMIDPETVKNLELVKNVMNL-----KSSHTLFGTLNYSFTAMGGRLLRVNILSPLTGAQS 302
Query: 61 INTRL---DCLD------ELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKV 110
I + L DC+ E + NE F + + L+ K + D+++ + TS
Sbjct: 303 IFSTLAPVDCMAKFNGVVEFVQNEDRFSDVREALKLLNKMDFDKLIASLASSEARPTS-- 360
Query: 111 LDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKR 170
AK + ++ ++ L+ + +P L + L ++S LL +Y + + E+ I +
Sbjct: 361 ----TAKGAFARVTQMLNLRNLVKYIPSLKRALAGSESQLLRIVYEMISD-ERLTIIEQL 415
Query: 171 IGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELK 230
+ ++E+ + A+ A + +A++ + LLD+AR ++ + ++ L +E +
Sbjct: 416 VCTNLNEETIAAKGGIGAVNARVYAVRANCNKLLDVARETYKENVSDIYELNKMLADEHE 475
Query: 231 LPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
LP + L + + GF + + G+ P FI V S++EL LN R K A
Sbjct: 476 LP-ITLMYQD-GGFTFVLKKTPLIGEPPKGFISVSSRKGKWLFSSMELKKLNARMKDALD 533
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E I ++ ++ LV I ++ L +E + L+DM+ SF+H + Y RP FT
Sbjct: 534 ETLILSDKIIQDLVSEIVTEIGALYKASEAVALVDMLW-SFSHASIMR---NYIRPEFT- 588
Query: 351 NGPLAIDGGRHPILESIH--NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
G LAI GRHPILE++ +PN+++ +A++ ++ GPNMSGKSTYL+Q+ L+ ++
Sbjct: 589 -GTLAIKSGRHPILETVQAAGMLVPNDVYCDDASSFQVIQGPNMSGKSTYLRQIGLLTVM 647
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
A G +VPA +++ R+ D + TR+ D+LE + STF +EM +A ++ + SL+++D
Sbjct: 648 AMCGSFVPAEYASFRLHDCLLTRLSNDDDLEKSLSTFASEMTTSAMILGMATPMSLVLVD 707
Query: 469 ELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV----- 523
ELGR TS DG I+ + E L+ +K++ FA+H + L + P V LH V
Sbjct: 708 ELGRGTSPRDGLGISHAIAEALIVVKSFVFFATHYKELKTTLSRQPTVINLHLSVHQTRK 767
Query: 524 VIRNNRLDFKFQLKDGPRH-VPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
N L F++++ DG HYGL LA +A LP VI AR + + + + E
Sbjct: 768 TSSNFGLTFQYKIVDGASEDYGHYGLELARLADLPDDVITEARRVAEHLAQVHAQNEE 825
>gi|320167656|gb|EFW44555.1| mutS-like protein [Capsaspora owczarzaki ATCC 30864]
Length = 925
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 233/373 (62%), Gaps = 17/373 (4%)
Query: 257 LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTL 316
LP F QVV+ + ++ ++ LN R + E Y+ + L ++ IR+ +S L
Sbjct: 551 LPKIFQQVVRSKKTLSFTSSDMIKLNNRVNESLQETYLMSNAVLANVLLDIRDMISSLYK 610
Query: 317 LAEVLCLLDMIVNSFAH--TISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHN----D 370
L EVL +LDM+ SFAH T+S + V RP FT+ LA+ G H I+E +++
Sbjct: 611 LTEVLAILDML-QSFAHHATLSRQAV----RPEFTDT--LAVKAGGHTIIEHLNSADEAS 663
Query: 371 FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFT 430
+ N++F+S N I+TGPNMSGKSTYL+Q+ ++ ++AQ+GC VPA ++++R+ D +F+
Sbjct: 664 VVTNDVFMSSGCNFQIITGPNMSGKSTYLRQIAIMQVVAQMGCLVPAEYASLRISDHLFS 723
Query: 431 RMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHL 490
R+G+ D++ESNSSTFM EM+ETA+++Q+ + RSLI++DELGR TS+ + I + CE+L
Sbjct: 724 RIGSDDHIESNSSTFMLEMRETAYILQHATNRSLIIIDELGRGTSAQEAVGICHAICEYL 783
Query: 491 LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN--RLDFKFQLKDGPRHVPHYGL 548
LSLKA+T FA+H E L+ L ++YPNV H V ++ R F ++ GP HYG+
Sbjct: 784 LSLKAFTFFATHFEELTLLDSLYPNVANFHLEVQASSDSARPVFTHVIRKGPSKETHYGI 843
Query: 549 LLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI-CLKYSNQ 607
LAEVAG P+ V+E AR+ S I + + + E ++ + ++ A +L+ K S
Sbjct: 844 KLAEVAGFPAQVLERARNALSVI-ETQGQPDESAAPEFAVDRAVFQLASKLVQVAKESRM 902
Query: 608 DEESIRHALQNLK 620
DE+S+R L L+
Sbjct: 903 DEQSLRAYLLTLQ 915
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 149/255 (58%), Gaps = 16/255 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID T+ ++LE++ A + K SL+ +L TI G RLLR+N+LQP D+ T
Sbjct: 254 MMIDLTTCKHLELL-----ANARDPSSKASLYGVLNHCYTIPGARLLRSNILQPPTDLNT 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I TRLD ++EL +N+ +FFGL L KF + ++ PK+ + + D +
Sbjct: 309 IETRLDAVEELTTNDDMFFGLQDILSKF-LDVGHLIALLITIPKQHSITIADTN------ 361
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+++I LK LD +P L + L A S LL + + E+E++A IR +I E I +D
Sbjct: 362 --ITNLIHLKHVLDLIPQLRQTLSGASSALLQGCAK-MLEDERFAQIRAKIDEAISDDTK 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + R+Q+CFA+K GI+GLLD+ARR++ +T E ++NL ++Y + LP LK F+
Sbjct: 419 FQKGILLMRSQKCFAVKPGINGLLDVARRTYTETVEDIYNLTSQYATKFVLP-LKTAFSA 477
Query: 241 RQGFYLSIPHKDIQG 255
+GFY++ P + G
Sbjct: 478 SRGFYITTPVSMVPG 492
>gi|254167004|ref|ZP_04873857.1| DNA mismatch repair protein MutS [Aciduliprofundum boonei T469]
gi|197623860|gb|EDY36422.1| DNA mismatch repair protein MutS [Aciduliprofundum boonei T469]
Length = 823
Score = 265 bits (676), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 186/577 (32%), Positives = 307/577 (53%), Gaps = 52/577 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D+T+++NLEI H+ L K +L+H + +T G RLL+ + +PLKDI+ IN
Sbjct: 242 LDSTTLKNLEI---FHNVL---GEDKYTLYHTMNKCETPMGARLLKRWMQRPLKDIDEIN 295
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++EL +N+QL D + + + S++ D++ K
Sbjct: 296 DRLDAVEEL-ANKQLL-------------QDSI--------RTILSRIKDIERIK----- 328
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ + L + L L + LK A L N + +N AS I +I+ E+ +
Sbjct: 329 -TRVSLGRAVPRDLISLKESLKQADK-LRINFESKILKNS--ASKIYGIEGIIELIENAI 384
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P IK G + LD +R + + + + R + NLK+ +N+
Sbjct: 385 NGDYPVGEGV-----IKEGYNEELDEIKRIASNAKLLIGKMEERERRSTGIKNLKIGYND 439
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + ++ K+P + + N+ T EL L + SA Y
Sbjct: 440 VMGYYIEVSKSNLS-KVPKHYRRKQTLKNSERFITDELKDLEYKILSAKDRIYEIENKIY 498
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ ++ + E + V+ A+ + ++D +++S A YTRP E+ + I GR
Sbjct: 499 KDILKKLGEMIDVIERTAKSIAIID-VISSLARVALEM---NYTRPEVDESMDIEIRNGR 554
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HP++E ++ DF+PN+ I+ AA +I+TGPNM+GKSTY++QV LIVILAQ+G +VPA ++
Sbjct: 555 HPVVE-LYTDFVPNDTHINSAARFIILTGPNMAGKSTYMRQVALIVILAQMGSFVPADYA 613
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
I +VDRI+TR+G D++ STFM EM E A ++ +ERSLI++DE+GR TS+ DG
Sbjct: 614 KIGIVDRIYTRVGASDDITRGRSTFMMEMVELANILNTATERSLILLDEIGRGTSTYDGL 673
Query: 481 AIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
AIAWS EH+ S++A TIFA+H +L +L + NV+ H V + L F ++ G
Sbjct: 674 AIAWSITEHIHNSIRARTIFATHYHHLIDLENVLDNVRNYHIAVKETQDGLIFVRKVMPG 733
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
YG+ +A++AG+P V++ A+ I + I +K+V
Sbjct: 734 GMS-KSYGIEVAKLAGVPEKVVKRAKEILNLIEEKKV 769
>gi|254786792|ref|YP_003074221.1| DNA mismatch repair protein MutS [Teredinibacter turnerae T7901]
gi|259511176|sp|C5BMR5.1|MUTS_TERTT RecName: Full=DNA mismatch repair protein MutS
gi|237683787|gb|ACR11051.1| DNA mismatch repair protein MutS [Teredinibacter turnerae T7901]
Length = 864
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 179/576 (31%), Positives = 296/576 (51%), Gaps = 49/576 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+++DA + RNLE+ L+ + ++ +LF +L TT T G RLLR + PL+D+ T
Sbjct: 272 VSLDAATRRNLELDINLNGS------EENTLFSVLNTTATAMGGRLLRRWINTPLRDLHT 325
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+++R + L+ N + F + Q L+ + +R+L + P+ +T
Sbjct: 326 LHSRQSAIAALLENYR-FEQVQQELKHI-GDLERILGRIALRSARPRDLTR--------- 374
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L +L P L +LK A+ LA + + E + + + + + + E
Sbjct: 375 -----------LLNSLAIYPQLQPLLKSAECETLATLASEINE---FPGLVQELDKALVE 420
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P V R + I G D LD R + E + L + RE L LK+
Sbjct: 421 NP-----PVVIR--EGGVIAEGYDEELDELRGISTNAGEFLVKLETQERERTGLNTLKVG 473
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N G+++ I + K P+ +I+ N T EL + + SA R +
Sbjct: 474 YNRVHGYFIEISKSQAE-KAPAEYIRRQTLKNAERFITPELKTFEDKALSAKSRALSREK 532
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L++ + E + L + A + LD ++N+FA + +P F + I+
Sbjct: 533 ALYEQLIEKLNEHLRELQISAVAVAELD-VLNTFAERAHAL---KLVKPEFRGEAGIEIE 588
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D FIPN++ ++ M+I+TGPNM GKSTY++Q LIV+LAQ+G YVP
Sbjct: 589 KGRHPVVEQVLTDPFIPNDLTLNAQQRMLIITGPNMGGKSTYMRQTALIVLLAQVGSYVP 648
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + +VDRIFTR+G+ D+L STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 649 AEACRLGLVDRIFTRIGSSDDLAGGRSTFMVEMTETANILNNATSDSLVLMDEIGRGTST 708
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C EHL LK++T+FA+H ++ L P VK +H + + F
Sbjct: 709 YDGLSLAWACVEHLAEKLKSFTLFATHYFEITALPAQLPTVKNVHLDATEYQDNIVFLHN 768
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
++ GP YGL +A++AG+P V+ A+ + ++
Sbjct: 769 IQAGPAS-KSYGLQVAKLAGIPGAVLRQAKDVLHKL 803
>gi|381150658|ref|ZP_09862527.1| DNA mismatch repair protein MutS [Methylomicrobium album BG8]
gi|380882630|gb|EIC28507.1| DNA mismatch repair protein MutS [Methylomicrobium album BG8]
Length = 861
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 183/574 (31%), Positives = 298/574 (51%), Gaps = 55/574 (9%)
Query: 1 MNIDATSVRNLEI-IEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
+ +DA+S RNLEI P + + +L +L T T G+R LR L +PL+D
Sbjct: 274 IQLDASSRRNLEIDTHP-------SGQLQFTLLGVLDKTATAMGSRCLRRWLNRPLRDHF 326
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
+N R C++ L+ + L+ L LR+ + +R+ K +
Sbjct: 327 VLNRRYACIETLLQD-GLYRALQDTLRQV-GDIERISTRIALKSARP------------- 371
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+++L++ L ALP+L K L LA + + E + ++ + +G I ++
Sbjct: 372 ----RDLLVLRSTLAALPVLQKRLDGFDDPHLAGLRADIGE---HPAMLELLGRAIVDNP 424
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + R A G D LD R + + + + R+ + NLK+ +N
Sbjct: 425 -----PMLIRDGGVIA--AGYDEELDELRNLSQNADRFLIEMERRERQATGIHNLKVNYN 477
Query: 240 NRQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNI---HCSTLELASLNVRNKSAAGECYI 294
GFY+ I + + K+P + Q +K E L+ R KS A E +
Sbjct: 478 RVHGFYIEISNANAD-KVPVHYTRKQTLKGAERYITEELKAFEDKVLSAREKSLAFEKAL 536
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
E L+D I + L L A L LD++VN FA T + +RP +
Sbjct: 537 YDE-----LLDVIASSLGELQLCAAALAELDVLVN-FAERAETLNL---SRPMLQAEPGI 587
Query: 355 AIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I+ GRHP++E + F+PN++ ++ + M+++TGPNM GKSTY++Q LIV++A +GC
Sbjct: 588 RIEAGRHPVVEQVGGVPFVPNDLNLAGESRMLVITGPNMGGKSTYMRQAALIVLIAHVGC 647
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + + VD+IFTR+G D+L S STFM EM ETA ++ N + +SLI+MDE+GR
Sbjct: 648 FVPAKSAVLGPVDKIFTRIGASDDLASGRSTFMVEMSETANILHNATAQSLILMDEIGRG 707
Query: 474 TSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+C +HL + +A+T+FA+H L+ LA P+++ +H + +R+ F
Sbjct: 708 TSTFDGLSLAWACADHLARVTQAFTLFATHYFELTTLAEERPSIRNVHLEAMEHGDRIVF 767
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+KDGP + YGL +A +AG+P VIE A++
Sbjct: 768 LHAVKDGPAN-QSYGLQVAALAGVPRAVIEKAKT 800
>gi|254167808|ref|ZP_04874658.1| DNA mismatch repair protein MutS [Aciduliprofundum boonei T469]
gi|289597150|ref|YP_003483846.1| DNA mismatch repair protein MutS [Aciduliprofundum boonei T469]
gi|197623336|gb|EDY35901.1| DNA mismatch repair protein MutS [Aciduliprofundum boonei T469]
gi|289534937|gb|ADD09284.1| DNA mismatch repair protein MutS [Aciduliprofundum boonei T469]
Length = 828
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 185/577 (32%), Positives = 306/577 (53%), Gaps = 52/577 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D+T+++NLEI H+ L K +L+H + +T G RLL+ + +PLKDI+ IN
Sbjct: 247 LDSTTLKNLEI---FHNVL---GEDKYTLYHTMNKCETPMGARLLKRWMQRPLKDIDEIN 300
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++EL +N+QL D + + + S++ D++ K
Sbjct: 301 DRLDAVEEL-ANKQLL-------------QDSI--------RTILSRIKDIERIK----- 333
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ + L + A L L + LK A L N + +N AS I +I+ E+ +
Sbjct: 334 -TRVSLGRAAPRDLISLKESLKQADK-LRINFESKILKNS--ASKIYGIEGIIELIENAI 389
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P IK G + LD +R + + + + R + NLK+ +N+
Sbjct: 390 NGDYPVGEGV-----IKEGYNEELDEIKRIASNAKLLIGKMEERERRNTGIKNLKIGYND 444
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + ++ K+P + + N+ T EL L + SA Y
Sbjct: 445 VMGYYIEVSKSNLS-KVPKHYRRKQTLKNSERFVTDELKELEYKILSAKDRIYEIENKIY 503
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
++ + E + V+ A+ + ++D +++S A YTRP E+ + I GR
Sbjct: 504 RDILKKLGEMIDVIERTAKSIAIID-VISSLARVALEM---NYTRPEVDESMDIEIRNGR 559
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HP++E ++ DF+PN+ I+ A +I+TGPNM+GKSTY++QV LIVILAQ+G +VPA ++
Sbjct: 560 HPVVE-LYTDFVPNDTHINSDARFIILTGPNMAGKSTYMRQVALIVILAQMGSFVPADYA 618
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
I +VDRI+TR+G D++ STFM EM E A ++ +ERSLI++DE+GR TS+ DG
Sbjct: 619 KIGIVDRIYTRVGASDDITRGRSTFMMEMVELANILNTATERSLILLDEIGRGTSTYDGL 678
Query: 481 AIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
AIAWS EH+ S++A TIFA+H +L +L + NV+ H V + L F ++ G
Sbjct: 679 AIAWSITEHIHNSIRARTIFATHYHHLIDLENVLDNVRNYHIAVKETQDGLIFVRKVMPG 738
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
YG+ +A++AG+P V++ A+ I + I +++V
Sbjct: 739 GMS-KSYGIEVAKLAGVPEKVVKRAKEILNLIEEEKV 774
>gi|406909772|gb|EKD49954.1| hypothetical protein ACD_63C00001G0002 [uncultured bacterium]
Length = 830
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 190/589 (32%), Positives = 301/589 (51%), Gaps = 61/589 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++RNLE++ L S KK +L +L T T G RLLR ++L PL ++E
Sbjct: 269 MILDDATLRNLELVSTLRSG-----EKKNTLLWVLDDTLTSMGGRLLRNSVLSPLINVEK 323
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHF-CFKPKKVTSKVLDVDNAKKS 119
I RLD ++E + L + + L++ + +R+ C NA+
Sbjct: 324 IKNRLDSVEEFCKDNILREEVGEKLKEVS-DLERLAGKIGCMSA-----------NAR-- 369
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--E 177
++ LK +L +P L +LK+ S L + ++ E I EV+D E
Sbjct: 370 -----DLLALKDSLKIIPALKSILKNVDSKRLIFLKNNLNE----------IKEVVDLIE 414
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P + IK G D LD + + E + L K K+P+LK+
Sbjct: 415 KSVDESSPVTLKDGNL--IKKGYDAKLDKIKDAAISGKEWIKTLQRKESARAKIPSLKVK 472
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGEC 292
FN G+Y+ + ++ ++PS +I+ N T EL LN + E
Sbjct: 473 FNRVFGYYIEVSKTNLS-QVPSDYIRKQTLVNAERFITPELKEKEDLILNAEERMIELEF 531
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
I EI D + E + + +A++L LD++ N FA + YT+P +
Sbjct: 532 RIFVEIR-----DKVSEYIKDIQKVAKILAELDLLSN-FARIAIN---NNYTKPKVDTDD 582
Query: 353 PLAIDGGRHPILESIHN--DFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
L I GRHP++E I + F+PN++ + ++ ++++TGPNMSGKSTY++Q LI ++A
Sbjct: 583 GLEIKEGRHPVVERIKSAGSFVPNDVSLDNKNCQLIVLTGPNMSGKSTYIRQNALITLMA 642
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
QIG +VPA F I VVDRIFTR+G D L STFM EM+ETA ++ N + RSLI++DE
Sbjct: 643 QIGSFVPAAFVKIGVVDRIFTRVGASDALTRGQSTFMVEMQETANILNNATSRSLIILDE 702
Query: 470 LGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
+GR TS+ DG +IAW+ E+++S L A T+FA+H L EL I P VK + V
Sbjct: 703 IGRGTSTFDGVSIAWAVAEYIVSKEKLGAKTLFATHYHELLELEKILPRVKNFNVAVKES 762
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+++ F +++ G + YG+ + ++AGLP V+ A + ++ K E
Sbjct: 763 KDKVIFLYKILRGGTN-RSYGIYVGKLAGLPKEVVRRAEDVLIKLDKGE 810
>gi|90020903|ref|YP_526730.1| DNA mismatch repair protein MutS [Saccharophagus degradans 2-40]
gi|123277407|sp|Q21LB1.1|MUTS_SACD2 RecName: Full=DNA mismatch repair protein MutS
gi|89950503|gb|ABD80518.1| DNA mismatch repair protein MutS [Saccharophagus degradans 2-40]
Length = 887
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 185/569 (32%), Positives = 294/569 (51%), Gaps = 49/569 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE L + L GT + +LF +L TT T G RLLR L PL+DI
Sbjct: 272 VTLDAATRRNLE----LDTNLAGTEDN--TLFSVLNTTTTAMGGRLLRRWLHSPLRDIYI 325
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+N R ++ L+ N Q F L L+ + +R+L + +++ D+ S
Sbjct: 326 LNQRQSAIEALLDNYQ-FEPLRHTLKHI-SDLERILGRLALR----SARPRDLSRLCASI 379
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSF--LLANIYRSVCENEKYASIRKRIGEVIDED 178
+I +D+ PLL K+ K+ + F L+ + R++ EN + R G VI E
Sbjct: 380 AEFPAIQQHLNGIDS-PLLKKLAKEIREFPDLVDLLSRALMEN---PPVVIREGGVIAE- 434
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
G D LD R + + + L + R + L LK+ +
Sbjct: 435 --------------------GFDEELDELRAISTNAGDYLIKLEEQERAKTGLSTLKVGY 474
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ I K P+ +I+ N T EL + + SA R +
Sbjct: 475 NRVHGYYIEI-SKSQASSAPTEYIRRQTLKNAERFITPELKTFEDKALSAKSRALAREKG 533
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKP-VDRYTRPHFTENGPLAID 357
+ L++ + E + L + A + LD++ T++ + + + +P E + I+
Sbjct: 534 LYDDLIETLNEQLRELQVAASGVAELDVLT-----TLAERSNLLNFCKPELYEGEGIFIE 588
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D F+PN++ + M+I+TGPNM GKSTY++Q LIV+LAQIGCYVP
Sbjct: 589 QGRHPVVEQVLDDPFVPNDLLLDTDQRMLIITGPNMGGKSTYMRQTALIVLLAQIGCYVP 648
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + +VDRIFTR+G+ D+L STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 649 ASACKLGLVDRIFTRIGSSDDLAGGRSTFMVEMTETANILNNATRNSLVLMDEIGRGTST 708
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C EHL +L A+T+FA+H L+ L V+ +H N+ + F +
Sbjct: 709 YDGLSLAWACVEHLANNLHAFTLFATHYFELTGLPKALAGVQNVHLDATEHNDSIVFLHK 768
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETA 564
++ GP +GL +A++AG+PS VI A
Sbjct: 769 IQPGPAS-KSFGLQVAKLAGIPSNVIADA 796
>gi|296132996|ref|YP_003640243.1| DNA mismatch repair protein MutS [Thermincola potens JR]
gi|296031574|gb|ADG82342.1| DNA mismatch repair protein MutS [Thermincola potens JR]
Length = 882
Score = 262 bits (669), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 193/602 (32%), Positives = 306/602 (50%), Gaps = 63/602 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++ RNLE+ + S++K +L +L T+T G RLL+ L QPL DI
Sbjct: 270 MLLDPSTRRNLELTRTIRD-----SSRKGTLLWVLDYTQTAMGGRLLKTWLEQPLTDITA 324
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I TRLD ++EL++N + L + + + +R+ F NA+
Sbjct: 325 IETRLDTVEELVNNVFMRGDLQKLFTEV-YDLERLAGRIAFGSA----------NAR--- 370
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I LK +L LP + ++L+ A S L +YR + E AS+ I ID++
Sbjct: 371 ----DLIALKKSLQVLPKVKEILEKAYSPGLIQLYRQLDILEDVASL---IESAIDDNP- 422
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P R IK G + +D R++ D + L + +E + +LK+ +N
Sbjct: 423 ----PITLRDGGI--IKKGYNEEIDRLRKASRDGKTWIAELERREKERTGIKSLKVGYNK 476
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + ++ +P +I+ N T +L A + T++
Sbjct: 477 VFGYYIEVTRANLDA-VPDDYIRKQTLANAERFITPDLKEYESLILGAEEKI---TQLEY 532
Query: 301 EALVDAIREDVSVLTL----LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
E L A+RE +S T A ++ LD+ + +FA + YT+P ++G + I
Sbjct: 533 E-LFQAVREKISNSTARIQQAASIVAQLDVYI-AFAEAAIR---NNYTKPIINDDGIIKI 587
Query: 357 DGGRHPILESI--HNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
GRHP++E F+PN+ ++ M I+TGPNM+GKSTY++QV LIV++AQIG
Sbjct: 588 TDGRHPVVEKFMPEGSFVPNDTYLDCSGYRMDIITGPNMAGKSTYMRQVALIVLMAQIGS 647
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
YVPA + I +VDRIFTR+G D+L + STFM EM E A ++ N + +SLI++DE+GR
Sbjct: 648 YVPASEARIGIVDRIFTRVGASDDLATGQSTFMVEMNEVANILNNATAKSLIILDEVGRG 707
Query: 474 TSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
TS+ DG +IAW+ E++L + A T+FA+H L+ELA IYP V+ + + ++
Sbjct: 708 TSTFDGLSIAWAVAEYILDPEKIGAKTLFATHYHELTELADIYPGVQ--NHNIAVKEKGD 765
Query: 531 DFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRI--------TKKEVKRMEI 581
D F K P YG+ +A +AGLP V+ A+ I + TK+EV
Sbjct: 766 DIIFLRKIIPGGADRSYGIQVARLAGLPGEVLGKAKEILRTLEVNEDAVKTKREVAAARK 825
Query: 582 NC 583
C
Sbjct: 826 KC 827
>gi|407042794|gb|EKE41541.1| DNA mismatch repair protein mutS, putative [Entamoeba nuttalli P19]
Length = 755
Score = 262 bits (669), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 185/632 (29%), Positives = 340/632 (53%), Gaps = 48/632 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID + + LE+I A K SLF ++ TT T G + L N+LQP DIETI
Sbjct: 162 IDVQTAQQLELITNNLDA-----KKTGSLFAVINTTLTNNGRKTLIDNILQPPCDIETIL 216
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS--Q 120
R +C++ + N +L++ +FL++ P + D+++ ++ +D+ + + Q
Sbjct: 217 ERQNCVEFFLRNSELYYRSIEFLKQLP-DIDKIITSIL--------QLNRIDSIRPTTLQ 267
Query: 121 TLISSIILLKTALDALPLLAKVLK-DAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+++ ++ L L +P K + + LL RS+ ++ + ++ +I E V
Sbjct: 268 SILKNMCELYKLLYTIPQFQKGFELHTNAPLLITTMRSILDDPEINELK-----LILESV 322
Query: 180 LHARVPFVARTQQ--CFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
++ + T CF +K I+ LD++++ F +T E +H A EE L L
Sbjct: 323 MNPTIILSKNTMNKICFVMKQNINPYLDVSQQVFTETLEKIHTSA----EEASALGLILK 378
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIH-CSTLELASLNVRNKSAAGECYIRT 296
+ GF S K + +P +VVK +N + +T E+ SLN + S + +
Sbjct: 379 -TTQTGF--SYIFKGTKQNIPEGCCRVVKLTDNKYSVNTPEMISLNNKFLSIKNDIIKLS 435
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ + +++ ++VL +AE++ +LDMI+ ++ + + +P F + + I
Sbjct: 436 IGMISEKSEELKKRINVLNKMAEMIGVLDMIICFVTYSSTNSTI---CKPKFNDTRSIII 492
Query: 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
G+HPIL++ + FIPN+ +I + + ++ GPNM GKSTY++Q+ L++IL+ +GC++P
Sbjct: 493 KQGKHPILQTSISQFIPNDTYIDDTSRFCLINGPNMGGKSTYIRQIALLMILSHMGCFIP 552
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++IR + I +R+ T D++E N S+FM EM+E +++ +++ SLI++DELGR T
Sbjct: 553 AKAASIRPLTNILSRLSTDDSIELNQSSFMKEMEEVKEIIELMNDSSLILIDELGRGTGI 612
Query: 477 SDGFAIAWSCCEHLLSLKAYT--IFASHMENLSELATIYPN-VKILHFYVVIRNNRLDFK 533
DG +I+W+ E ++ LK+ + +F SH L+ L +YP+ V+ H VV+ ++ L K
Sbjct: 613 IDGVSISWAVSEEII-LKSLSTCLFVSHFPELNNLERLYPHVVRQFHMEVVLNDHGLCPK 671
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLY 593
++L +G +YG+ +AE+AG P ++I+ A I I K + Q+ + Y
Sbjct: 672 YKLTEGFDENDYYGIQIAEMAGFPLSIIQNAIEIKKNIQKDTTQ-------QFNTAK--Y 722
Query: 594 HAAQRLICLKYSNQDEESIRHALQNLKESFID 625
Q+LI LK S D+ ++R L+ LK+ F++
Sbjct: 723 DLGQKLIALKDSQLDQSNLRAYLKYLKQMFLE 754
>gi|253577912|ref|ZP_04855184.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850230|gb|EES78188.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 874
Score = 262 bits (669), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 191/584 (32%), Positives = 299/584 (51%), Gaps = 49/584 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID++S RNLE++E L K+ SL +L TKT G R LR+ + QPL D +
Sbjct: 264 MLIDSSSRRNLELVETLRE-----KQKRGSLLWVLDKTKTAMGARTLRSYVEQPLIDRDE 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ L+EL N L + ++L + +R++ +K N +
Sbjct: 319 IEQRLEALEELNKNGMLRDEIREYLGPV-YDLERLISRISYKSA----------NPR--- 364
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I ++L+ LP + +VLK+ ++ LL IY + E + KR I ED
Sbjct: 365 ----DLIAFASSLEMLPYIKQVLKEFKTPLLQKIYEDMDSLEDVTDLIKR---AIVED-- 415
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A+ IK G + +D RRS D + + L K RE + +K+ +N
Sbjct: 416 ----PPLAQKDGGI-IKEGYNEDVDKFRRSRTDGKKWLSELEAKERERTGIKTMKIKYNR 470
Query: 241 RQGFYLSIPH--KDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+ L I + KD+ +P +I+ N T EL L A + Y
Sbjct: 471 VFGYSLEITNTFKDL---VPDNYIRKQTLTNAERYITQELKELEDLILGAEDKLYALEYE 527
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ DA+ ++V + A+ + LD+ FA + + RP G + I
Sbjct: 528 LFCDVRDAVGKEVMRIQKTAKAVAALDV----FASLALVAERNHFVRPKTNTTGVIDIKN 583
Query: 359 GRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E I ND FI N+ ++ V I+TGPNM+GKSTY++Q LIV++AQIG +V
Sbjct: 584 GRHPVVEQMIENDMFIANDTYLDNHKKRVSIITGPNMAGKSTYMRQTALIVLMAQIGSFV 643
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +VDRIFTR+G D+L S STFM EM E A +++N + RSL+++DE+GR TS
Sbjct: 644 PAEKANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATARSLLILDEIGRGTS 703
Query: 476 SSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG AIAW+ EH+ + K A T+FA+H L+EL P V V + + + F
Sbjct: 704 TFDGLAIAWAVIEHISNTKLCGAKTLFATHYHELTELEGKIPGVNNYCIAVKEKGDDIVF 763
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
++ G YG+ +A++AG+P +VI+ A+ + ++ ++
Sbjct: 764 LRKIVQGGAD-KSYGIQVAKLAGVPDSVIQRAKELVEELSDADI 806
>gi|167387405|ref|XP_001738147.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165898722|gb|EDR25506.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 758
Score = 261 bits (667), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 185/632 (29%), Positives = 336/632 (53%), Gaps = 48/632 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID + + LE+I A SLF ++ TT T G + L N+LQP DIETI
Sbjct: 146 IDVQTAQQLELITNNLDA-----KNTGSLFAVINTTLTNNGRKTLIDNILQPPCDIETIL 200
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS--Q 120
R +C++ + N +L++ +FL++ P + D+++ ++ +D+ + + Q
Sbjct: 201 ERQNCVEFFLRNSELYYRSIEFLKQLP-DIDKIITSIL--------QLNRIDSIRPTTLQ 251
Query: 121 TLISSIILLKTALDALPLLAKVLK-DAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+++ ++ L L +P KV + + LL RS+ ++ + ++ +I E +
Sbjct: 252 SILKNMCELYKLLYTIPQFQKVFELHTNAPLLITTMRSILDDPEINELK-----LILESI 306
Query: 180 LHARVPFVARTQQ--CFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
L+ V T CF +K I+ LDI+++ F +T E +H A EE L L
Sbjct: 307 LNPTVILSKNTMNKICFVMKQNINPYLDISQQIFTETLEKIHTSA----EEASALGLILK 362
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIH-CSTLELASLNVRNKSAAGECYIRT 296
+ GF S K + +P ++VK +N + +T E+ SLN + S + +
Sbjct: 363 -TTQTGF--SYIFKGTKQNIPKGCCRIVKLTDNKYSVNTPEMISLNNKFLSIKNDIIKLS 419
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ + +++ ++VL +AE++ LLDMI+ ++ + + +P F + + I
Sbjct: 420 IGIISEKSEELKKRINVLNKMAEMIGLLDMIICFVTYSSTNSTI---CKPKFNDTRSIII 476
Query: 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
G+HPIL++ FIPN+ +I + + ++ GPNM GKSTY++Q+ L++IL+ +GC++P
Sbjct: 477 KQGKHPILQTSITQFIPNDTYIDDTSRFCLINGPNMGGKSTYIRQIALLMILSHMGCFIP 536
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++IR + I +R+ T D++E N S+FM EM+E +++ +++ SLI++DELGR T
Sbjct: 537 AKAASIRPLTNILSRLSTDDSIELNQSSFMKEMEEVKEIIELMNDSSLILIDELGRGTGI 596
Query: 477 SDGFAIAWSCCEHLLSLKAYT--IFASHMENLSELATIYPN-VKILHFYVVIRNNRLDFK 533
DG +I+W+ E ++ LK+ + +F SH L+ L +YP+ V+ H VV+ + L K
Sbjct: 597 IDGVSISWAVSEEII-LKSLSTCLFVSHFPELNNLEKLYPHVVRQYHMEVVLNEHGLCPK 655
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLY 593
++L +G +YG+ +AE+AG P ++I+ A I I K ++ Y
Sbjct: 656 YKLTEGFDGNDYYGIQIAEMAGFPLSIIQNAIEIKKSIQKDTTQQFN---------TAKY 706
Query: 594 HAAQRLICLKYSNQDEESIRHALQNLKESFID 625
Q+LI LK + D+ ++R L+ LK+ F++
Sbjct: 707 DLGQKLIALKDNQLDQANLRAYLKYLKQMFLE 738
>gi|86606675|ref|YP_475438.1| DNA mismatch repair protein MutS [Synechococcus sp. JA-3-3Ab]
gi|123505746|sp|Q2JT35.1|MUTS_SYNJA RecName: Full=DNA mismatch repair protein MutS
gi|86555217|gb|ABD00175.1| DNA mismatch repair protein MutS [Synechococcus sp. JA-3-3Ab]
Length = 882
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 180/579 (31%), Positives = 295/579 (50%), Gaps = 50/579 (8%)
Query: 3 IDATSVRNLEIIEPL-HSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+D + RNLE+ + + A G SL +L ++T G R LR LLQPL+D E I
Sbjct: 289 LDTQTRRNLELTQTIREGAFVG------SLLWVLDRSRTAMGGRTLRRWLLQPLRDPEQI 342
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQT 121
R D + EL+ + L L L + +++ ++V +
Sbjct: 343 RLRQDTIQELLESPSLRTRLGSLLDSL------------YDLERLANRVASGTANPR--- 387
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
++ L ++L LP LA+++ +AQ+ LL ++ ++ +G I+ +L
Sbjct: 388 ---ELVALGSSLGKLPQLAELVAEAQTPLLQSL-------QQVDPALVDLGHRIEHTLLP 437
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
+ P + + I+ G+D LD R+ + L RE +P LK+ FN
Sbjct: 438 SPPPVLT---EGGLIRPGVDAELDRLRQQVEQDRHWIAQLEKTERERTGIPTLKVGFNKA 494
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+YLSI Q ++P +I+ N T EL R +A E R
Sbjct: 495 FGYYLSISRAKAQ-QVPKEYIRKQTLTNEERFITPELKEKEARILTAQTEINQREYELFV 553
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
L + + +A+ L +D + + YTRP T + L I+ GRH
Sbjct: 554 QLRQEAGSQAAAIRQVAQTLAAVDALFGLAEVAVQQG----YTRPVITADRRLIIEEGRH 609
Query: 362 PILES--IHNDFIPNNIFISE--AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
P++E F+PN++ + +++++TGPNMSGKSTYL+Q+ LI ILAQ+G +VPA
Sbjct: 610 PVVEKSLPQGLFVPNSVRLGSPHGPDLIVLTGPNMSGKSTYLRQIGLIQILAQMGSFVPA 669
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + + DR+FTR+G VD+L + STFM EM ETA ++ + ERSL+++DE+GR T++
Sbjct: 670 RRAELGLCDRVFTRIGAVDDLATGQSTFMVEMNETANILNHAGERSLVLLDEIGRGTATF 729
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN--NRLDFKF 534
DG +IAW+ E+L + ++A TIFA+H L++L T+ PNV +F VV++ +R+ F
Sbjct: 730 DGLSIAWAVAEYLATQVRARTIFATHYHELNQLETLLPNVA--NFQVVVKELRDRIIFLH 787
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
Q++ G YG+ + +AGLP VIE A+ + + + +
Sbjct: 788 QVQPGGADR-SYGIEVGRMAGLPQPVIERAKQVLALVEQ 825
>gi|209694223|ref|YP_002262151.1| DNA mismatch repair protein MutS [Aliivibrio salmonicida LFI1238]
gi|238058941|sp|B6ENH6.1|MUTS_ALISL RecName: Full=DNA mismatch repair protein MutS
gi|208008174|emb|CAQ78317.1| DNA mismatch repair protein MutS [Aliivibrio salmonicida LFI1238]
Length = 855
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 190/626 (30%), Positives = 312/626 (49%), Gaps = 54/626 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L +L +L T T G+RLL+ L QP++ + +N
Sbjct: 268 LDAATRRNLEITQNLAGGF------NHTLSEVLDHTSTAMGSRLLKRWLHQPIRTHDVLN 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL SN L+ LS L++ + +R+L + +
Sbjct: 322 QRLDAIGELKSN-GLYAELSPQLKQI-GDVERILARLALRSARP---------------- 363
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ AL LP LA+ Q+F ++ + AS+ + I + + E +
Sbjct: 364 -RDLARLRNALQQLPELAQ---STQAFEQTHLL-------ELASLAQPIDSICELLERAV 412
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G + LD R + + L + RE + LK+ +NN
Sbjct: 413 KENPPVVIRDGGVLA--DGYNEELDQWRDLANGAALFLSKLEQEERERHDIDTLKVGYNN 470
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
GFY+ I K K P+ +++ N EL + + S+ + +
Sbjct: 471 VHGFYIQI-SKGQSHKAPAHYVRRQTLKNAERYIIPELKAHEDKVLSSKSKALAIEKKLW 529
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E L D + + L L+A + LD++ N A T++ Y RP + + + I+G
Sbjct: 530 EELFDQLLPHLEQLQLMANAISELDVLSNLAERADTLN------YCRPTLSSDIGMKIEG 583
Query: 359 GRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E + +D FI N I +++ M+I+TGPNM GKSTY++Q LI ++A +GCYVPA
Sbjct: 584 GRHPVVEQVMSDPFIANPINLNDDRKMLIITGPNMGGKSTYMRQTALIALMAHVGCYVPA 643
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I ++DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 644 DSAHIGLLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATQHSLVLMDEIGRGTSTY 703
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+ E L + + A T+FA+H L+EL ++ + +H V + + F +
Sbjct: 704 DGLSLAWASAEWLATKINAMTLFATHYFELTELPNLFSGLANVHLDAVEHGDEIAFMHAV 763
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK---QIQMLY 593
++G + YGL +A +AG+P VI+ A+ ++ + K + Q K Q+ ++
Sbjct: 764 QEGAAN-KSYGLAVASLAGVPKAVIKKAKQKLQQLENGQPKNQSLTSTQIKQEHQLSLIP 822
Query: 594 HAAQRLICLKYSNQDEESIRHALQNL 619
++ L N D+ S R AL+ L
Sbjct: 823 EPSEVEEALAKVNPDDLSPRQALEAL 848
>gi|67473543|ref|XP_652534.1| DNA mismatch repair protein mutS [Entamoeba histolytica HM-1:IMSS]
gi|56469392|gb|EAL47146.1| DNA mismatch repair protein mutS, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710211|gb|EMD49334.1| DNA mismatch repair protein mutS, putative [Entamoeba histolytica
KU27]
Length = 755
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 184/634 (29%), Positives = 339/634 (53%), Gaps = 48/634 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID + + LE+I A K SLF ++ TT T G + L N+LQP DIET
Sbjct: 160 IRIDVQTAQQLELITNNLDA-----KKTGSLFAVINTTLTNNGRKTLIDNILQPPCDIET 214
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS- 119
I R +C++ + N +L++ +FL++ P + D+++ ++ +D+ + +
Sbjct: 215 ILERQNCVEFFLRNSELYYRSIEFLKQLP-DIDKIITSIL--------QLNRIDSIRPTT 265
Query: 120 -QTLISSIILLKTALDALPLLAKVLK-DAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
Q+++ ++ L L +P K + + LL RS+ ++ + ++ +I E
Sbjct: 266 LQSILKNMCELYKLLYTIPQFQKGFELHTNAPLLITTIRSILDDPEINELK-----LILE 320
Query: 178 DVLHARVPFVARTQQ--CFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
VL+ + T CF +K I+ LD++++ F +T E +H A EE L
Sbjct: 321 SVLNPTIILSKNTMNKICFVMKQNINPYLDVSQQVFTETLEKIHTSA----EEASTLGLI 376
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIH-CSTLELASLNVRNKSAAGECYI 294
L + GF S K + +P ++VK +N + +T E+ SLN + S +
Sbjct: 377 LK-TTQSGF--SYIFKGTKQNIPEGCCRIVKLTDNKYSVNTPEMISLNNKFLSIKNDIIK 433
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
+ + + +++ ++VL +AE++ +LDMI+ ++ + + +P F + +
Sbjct: 434 LSIGMISEKSEELKKRITVLNKIAEMIGVLDMIICFVTYSSTNSTI---CKPKFNDTRSI 490
Query: 355 AIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I G+HPIL++ FIPN+ +I + + ++ GPNM GKSTY++Q+ L++IL+ +GC+
Sbjct: 491 IIKQGKHPILQTSITQFIPNDTYIDDTSRFCLINGPNMGGKSTYIRQIALLMILSHMGCF 550
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
+PA ++IR + I +R+ T D++E N S+FM EM+E +++ +++ SLI++DELGR T
Sbjct: 551 IPAKAASIRPLTNILSRLSTDDSIELNQSSFMKEMEEVKEIIELMNDSSLILIDELGRGT 610
Query: 475 SSSDGFAIAWSCCEHLLSLKAYT--IFASHMENLSELATIYPN-VKILHFYVVIRNNRLD 531
DG +I+W+ E ++ LK+ + +F SH L+ L +YP+ V+ H V + ++ L
Sbjct: 611 GIIDGVSISWAVSEEII-LKSLSTCLFVSHFPELNNLERLYPHVVRQFHMEVALNDHGLC 669
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQM 591
K++L +G +YG+ +AE+AG P ++I+ A I I K + Q+ +
Sbjct: 670 PKYKLTEGFDENDYYGIQIAEMAGFPLSIIQNAIEIKKNIQKDTTQ-------QFNTAK- 721
Query: 592 LYHAAQRLICLKYSNQDEESIRHALQNLKESFID 625
Y Q+LI LK S D+ ++R L+ LK+ F++
Sbjct: 722 -YDLGQKLIALKDSQLDQSNLRAYLKYLKQMFLE 754
>gi|190335787|gb|ACE74546.1| mutS homolog 4 [Oncorhynchus mykiss]
Length = 343
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 212/329 (64%), Gaps = 15/329 (4%)
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + E + L L++ + +LDM++ S A+ + + Y RP FT+ LAI GRHP
Sbjct: 4 LLNTVHEHIHCLYKLSDAVSMLDMLL-SLANACT---ISDYVRPEFTDT--LAIKQGRHP 57
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
ILE I + NN +ISE +N VI+TGPNMSGKSTYL+QV L I+AQIG +VPA +++
Sbjct: 58 ILERIVGQQPVSNNSYISEGSNFVIITGPNMSGKSTYLKQVALCQIMAQIGSFVPAEYAS 117
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
R+ D+IFTR+G D+ E+NSSTFM EMKE ++++ NVS+RSLI++DELGR TS+ +G
Sbjct: 118 FRIADQIFTRIGVDDDFETNSSTFMVEMKEVSYLIHNVSDRSLIIIDELGRGTSAEEGVG 177
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV------IRNNRLDFKFQ 535
I S CE LLSL+A+T+FA+H L EL T+YPNV+ H V R+ + F
Sbjct: 178 ICHSVCEFLLSLRAFTLFATHFLELCELETLYPNVENQHMEVQHTRTGDTGTERVIYTFL 237
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHA 595
L G +YGL AE+ LPST+I+ A++I+S++++ + + + +Q + +YH
Sbjct: 238 LSRGSSEERNYGLRAAEMTALPSTIIQEAKAISSKVSQHLLAKHHSDPETQRQ-RAVYHL 296
Query: 596 AQRLI-CLKYSNQDEESIRHALQNLKESF 623
A RL+ + S D +S+R L+ LK +
Sbjct: 297 ATRLLQTARNSRLDPDSLRIYLKGLKRHY 325
>gi|399912477|ref|ZP_10780791.1| DNA mismatch repair protein MutS [Halomonas sp. KM-1]
Length = 863
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 189/628 (30%), Positives = 304/628 (48%), Gaps = 57/628 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S RNLEI L G N +L +L TT T G+RLL+ L +PL+D +
Sbjct: 271 IDAASRRNLEIDINLGG---GGDN---TLASVLDTTATAMGSRLLKRWLNRPLRDRSQVQ 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCH---FCFKPKKVTSKVLDVDNAKKS 119
R + L+ E F L + L+ + +R+L + +P+ +
Sbjct: 325 GRQAAVALLLEQEG-FVALRELLKAI-GDVERILARVALYSARPRDLAR----------- 371
Query: 120 QTLISSIILLKTALDALPLLAKVLKD-AQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
L+ AL ALP L L+D ++ L + + + A + R
Sbjct: 372 ---------LRDALLALPELQGELQDYSEGTALDELAHHIRPYPELADMLAR-------- 414
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
L P V R I+ G D LD R + + L + RE L LK+ +
Sbjct: 415 GLFDNPPVVIRDGGV--IRDGFDAELDDYRGLAEHAGDYLVKLEARERERTGLAGLKVGY 472
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ IP + ++P +++ N EL + SA R ++
Sbjct: 473 NRVHGYYIEIPRAQAR-EVPVDYVRRQTLKNAERFIIPELKEFEDKALSAKSRALAREKL 531
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L+D++ +++ L L LD++ +FA ++RP E + I G
Sbjct: 532 LYDGLLDSLNAELAPLQGTGRALAALDVLC-AFAERAQALG---FSRPRLGEAPGIEIRG 587
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E + + F+PN++ + E M+++TGPNM GKSTY++Q LI +LA G +VPA
Sbjct: 588 GRHPVVEHVSDAPFVPNDLVLDEQRRMLVITGPNMGGKSTYMRQAALITLLAHTGSFVPA 647
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I VDRIFTR+G+ D+L STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 648 DEACIGPVDRIFTRIGSSDDLAGGRSTFMVEMTETASILHNATDHSLVLMDEIGRGTSTF 707
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
DG ++AW+ EHL +A+T+FA+H ++ LA V +H + + F +++
Sbjct: 708 DGLSLAWASAEHLTRTRAFTLFATHYFEMTALAEQAEGVANVHLTAAEHRDGIVFMHRVE 767
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINC-------LQYKQIQ 590
+GP YGL +A++AG+P +VI AR +++ ++EV + + Q
Sbjct: 768 EGPASQ-SYGLQVAQLAGVPQSVIARARDKLAQLEQQEVDQSSRGGGLPRGDDAKPMQSD 826
Query: 591 MLYHAAQRLI-CLKYSNQDEESIRHALQ 617
+ AA L+ L N DE + R AL+
Sbjct: 827 LFASAAHPLLDALADLNPDELTPRRALE 854
>gi|397641199|gb|EJK74526.1| hypothetical protein THAOC_03788 [Thalassiosira oceanica]
Length = 937
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 220/370 (59%), Gaps = 25/370 (6%)
Query: 171 IGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELK 230
+ ++ E + + R Q+CFA+K DG++D+ R++F + ++ LA++Y E
Sbjct: 567 VTDIFTESTSYTKNSHAMRHQECFALKPNTDGMMDVLRKAFLANVDDIYRLADEYAETYD 626
Query: 231 LPNLKLPFNNRQGFYLSIPHKD--IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSA 288
+ N+++ + +G+YLSI D + LP FIQ VK+G IHC+T E+ SLN R +
Sbjct: 627 M-NVQVKETSARGYYLSISSADLGVDLALPDVFIQPVKNGKLIHCTTEEVYSLNNRAQEN 685
Query: 289 AGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
+ + T ++ ++ R++ L L++ + LLDM + FA +++ + +TRP
Sbjct: 686 VQDLLLMTHGRIQEVLQVARDNFDCLASLSDAIALLDM-CHCFADNVASSRLP-WTRPIL 743
Query: 349 TEN---------------GPLAIDGGRHPILES-----IHNDFIPNNIFISEAANMVIVT 388
T++ G LAI GR+PI S +++PN+ F S N V++T
Sbjct: 744 TDSASDPSQDTEEVTRGGGSLAIRNGRYPIDTSSVGALAEGEYVPNDTFASSLQNFVVLT 803
Query: 389 GPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTE 448
G N SGKSTYL+QV LI +LA G YVPA ++I + D+I TR+G+ D+ E N S+F+ E
Sbjct: 804 GINGSGKSTYLKQVALITVLAHCGSYVPASEASIPIRDQICTRIGSADDQEHNISSFLAE 863
Query: 449 MKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508
MKETA + N +ERSL ++DELGRATS+ DG AIAW+ E LL+ +A T F +H +S+
Sbjct: 864 MKETAMICNNTTERSLFLLDELGRATSNEDGVAIAWAVSEFLLTKRAMTFFVTHYPQISK 923
Query: 509 LATIYPNVKI 518
LA +YPNV++
Sbjct: 924 LAEVYPNVQV 933
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 24 TSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQ 83
T SL + TKT G RLLR NLL P ++TI RLD +D L+ +E+ F+ + +
Sbjct: 343 TGRTTNSLVGTIDCTKTSIGGRLLRTNLLAPPTRLDTITARLDLVDSLLDDEEFFYAVME 402
Query: 84 FLRKFPKETDRVLCHFCFKPKKVTSKVLD----------VDNAKKSQTLISSIILLKTAL 133
L P + D++L + PKK K + +AK + IS+++ +K+ L
Sbjct: 403 HLEDLP-DVDKMLSYISMTPKKKFGKEGNGALFGQTESQAISAKIASKGISALVCIKSTL 461
Query: 134 DALPLLAKVLK 144
+P A VL+
Sbjct: 462 SVVPSFAHVLE 472
>gi|148978206|ref|ZP_01814736.1| DNA mismatch repair protein [Vibrionales bacterium SWAT-3]
gi|145962628|gb|EDK27904.1| DNA mismatch repair protein [Vibrionales bacterium SWAT-3]
Length = 853
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 186/571 (32%), Positives = 294/571 (51%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T T G+R+L+ L QP+++I ++
Sbjct: 266 LDAATRRNLEITQNLGG---GTDN---TLAEVLDHTATAMGSRMLKRWLHQPMRNISALD 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E M + LF L L++ + +R+L + + D A+
Sbjct: 320 QRLDAIGE-MKDLALFTELQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A++ LP LA+ L + L + +YAS + E++ E +
Sbjct: 367 ------LRQAMEYLPELAETLNQLKHPYLTQL-------AQYASPLDEVSELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R +E + L + RE + LK+ +NN
Sbjct: 413 NPPVVIRDGGVIA--EGYNAELDEWRNLAAGATEFLDQLEQEERERHGIDTLKVGYNNVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAIEKQL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L +A + LD++ N A T +D Y RP TE+ + I
Sbjct: 527 --WEELFDLLLPHLERLQNIASSVSQLDVLQN-LAERADT--LD-YCRPTMTESAGVQIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I +++ M+I+TGPNM GKSTY++Q LI ++A IGCYVP
Sbjct: 581 AGRHPVVEQVMDEPFIANPIDLNDKRKMLIITGPNMGGKSTYMRQTALIALMAHIGCYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +TI +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 641 AESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL P + +H V + + F
Sbjct: 701 YDGLSLAWASAEWLANQINAMTLFATHYFELTELPNQIPTLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKAVIKNARA 790
>gi|254479232|ref|ZP_05092577.1| DNA mismatch repair protein MutS [Carboxydibrachium pacificum DSM
12653]
gi|214034833|gb|EEB75562.1| DNA mismatch repair protein MutS [Carboxydibrachium pacificum DSM
12653]
Length = 866
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 183/610 (30%), Positives = 320/610 (52%), Gaps = 53/610 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ ++RNLEI+E + +KK SL +L T T G RLL+ L +PL D +
Sbjct: 265 MGLDSNAIRNLEILESNRN-----KSKKGSLLGVLDRTVTPMGGRLLKKWLEEPLIDKDE 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++EL +N + L + L K + +R+ ++ VT K
Sbjct: 320 IEKRLDAVEELFNNYRERIELKELLNKV-YDLERLASKIVYQS--VTPK----------- 365
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I +K +L LP + +L S LL IY + + + + E+ID+ +
Sbjct: 366 ----DFISIKLSLQNLPKIKNILSKFSSRLLKEIYEKL-------DVLQDVYELIDKSI- 413
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + ++ IK G + ++D R++ + + NL + RE+ + NL++ +N
Sbjct: 414 --KDDPSNQLKEGNIIKDGYNEMVDKLRKASTEGKNWIANLEAEEREKTGIKNLRIGYNK 471
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + +I ++P +I+ N T EL + A E I E
Sbjct: 472 VFGYYIEVTKSNIP-QVPDRYIRKQTLANAERYVTPELKEIE-ETILGAEEKLIELEY-- 527
Query: 301 EALVDAIREDVSVLTL----LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
L + IRE V + + A+ + ++D+++ SFA T ++Y +P + I
Sbjct: 528 -ELFNEIREKVELQIVRIQNTAKYIAIIDVLI-SFAEVAET---NKYVKPIVDYEDRIVI 582
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E+I ++ F+ N+I I ++I+TGPNM+GKSTY++QV LIV++AQ+GC+V
Sbjct: 583 KEGRHPVVETISDEGFVANDIDIGPENPIMIITGPNMAGKSTYMRQVALIVLMAQVGCFV 642
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ I +VD+IFTR+G D++ + STFM EM E A ++ + + +SLI++DE+GR TS
Sbjct: 643 PASYARIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILHSATSKSLIILDEVGRGTS 702
Query: 476 SSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IA + E++ +KA T+FA+H L++L V+ + V R + + F
Sbjct: 703 TYDGMSIAQAVIEYIHEKIKAKTLFATHYHELTKLEGKLRGVRNFNVSVEEREDDIIFLH 762
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME----INCLQYKQIQ 590
++ G YG+ ++++AGLP ++IE A+ I + K + + E ++ + Q+
Sbjct: 763 KIVPGGSD-RSYGIQVSKLAGLPYSIIERAKEILEALEKDKAVKNELEEAVSQFAFTQMD 821
Query: 591 MLYHAAQRLI 600
+ A LI
Sbjct: 822 IFSSAKDALI 831
>gi|255994617|ref|ZP_05427752.1| DNA mismatch repair protein MutS [Eubacterium saphenum ATCC 49989]
gi|255993330|gb|EEU03419.1| DNA mismatch repair protein MutS [Eubacterium saphenum ATCC 49989]
Length = 901
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 180/603 (29%), Positives = 316/603 (52%), Gaps = 64/603 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M++D +++R+LE+IEPL+ A + SL +L TKT G RLLR+ L +PLK+++
Sbjct: 269 MSLDKSTMRSLELIEPLYEA-----DGNYSLVDILGRTKTSMGARLLRSWLKRPLKNLQN 323
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D +++ + +++ +T R + K++ ++ A ++
Sbjct: 324 ITKRHDAIEKFVEHKEDI------------KTIRKALGNIYDFKRICGRI----GAGRAN 367
Query: 121 TLISSIILLKTALDALPLLAKVL------KDAQ-SFLLANIYRSVCENEKYASIRKRIGE 173
+I +K +L +P L +L D Q S LL +Y + + E +S+ +
Sbjct: 368 A--RDLISMKLSLMRIPELKSLLTNVNTQGDKQASALLNELYDRIDDFEDVSSLIENA-- 423
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
++DE P + T+ IK G D LD +R+ D + L N RE +
Sbjct: 424 LVDE-------PPITITEGEI-IKDGFDEELDSMKRAIADGKAWIAGLENTERERTGIKA 475
Query: 234 LKLPFNNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
LK+ +N G+YL + KD+ +P +I+ N T +L + A +
Sbjct: 476 LKVGYNKVFGYYLEVRNASKDL---VPDEYIRKQTLVNAERYITPKLKEVEAEVLGAQNK 532
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
R C + + D I E + L A+ + +D++ I + YT+P+ +
Sbjct: 533 INKREYDCFQNIRDMISERILELMHTADAIAEIDVLAGLAKVAID----NGYTKPNMHDG 588
Query: 352 GPLAIDGGRHPILESI--HNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
+ + GRHP++E++ +N F NN I ++ +++++TGPNM+GKSTY++Q LIV++
Sbjct: 589 KDIEVVQGRHPVVEAVMEYNQFTGNNFSIDADEKSLLLITGPNMAGKSTYMRQNALIVLM 648
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
+QIG ++PA + I +VDRIFTR+G DNL STF EM E A++++N +++S +++D
Sbjct: 649 SQIGSFIPAESANIGIVDRIFTRIGAGDNLAKGQSTFFLEMSELAYILKNATDKSFVILD 708
Query: 469 ELGRATSSSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
E+GR TS+ DG +IA++ C+ LL + K T+FA+H LSEL + P + L V
Sbjct: 709 EIGRGTSTYDGLSIAYALCKFLLQGDNPKVRTLFATHYHELSELEGVLPGLLNLTIAVFE 768
Query: 526 RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ 585
+N ++ F ++K G YG+ +A++AG+P ++ +A K+++K +E +
Sbjct: 769 KNGKVIFSHKIKKGSAE-KSYGVDVAKLAGVPDELLRSA--------KQKLKELEFEAER 819
Query: 586 YKQ 588
YKQ
Sbjct: 820 YKQ 822
>gi|334143596|ref|YP_004536752.1| DNA mismatch repair protein mutS [Thioalkalimicrobium cyclicum
ALM1]
gi|333964507|gb|AEG31273.1| DNA mismatch repair protein mutS [Thioalkalimicrobium cyclicum
ALM1]
Length = 862
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 188/575 (32%), Positives = 284/575 (49%), Gaps = 59/575 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLEI H + + +LFH++ +T G+RLLR L QPL++
Sbjct: 267 LTLDAITRRNLEIDS--HQQGF----QHHTLFHLIDQCQTAMGSRLLRRWLRQPLRNRTH 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAK 117
I RL+ +D L+ +++ + L + L+ + +R+L +P+ ++
Sbjct: 321 IRQRLNVVDSLLHSQE-YPILQEHLKPI-GDLERILSRVALGSARPRDLSQ--------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKD--AQSFLLANIYRSVCENEKYASIRKRIGEVI 175
L L+ALP L KD A L A I E+
Sbjct: 370 -----------LSRGLNALPGLLSWAKDWGALDALTAQI--------------DPFHELG 404
Query: 176 DE--DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
DE L A P + R F K G D LD + + +L + RE L +
Sbjct: 405 DELNRALVANPPLLLRDGGVF--KSGYDEQLDELLALKTQAGDFLTDLETRERERTGLNS 462
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
LK+ FN QG+Y+ + K ++P + + N T EL + + SA
Sbjct: 463 LKIGFNRVQGYYIEL-SKQYSDQVPLDYTRRQTLKNAERYITAELKNFETQILSADDRAQ 521
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
R E L+ I+ + VL A L LD++ N A ++ Y +P F E
Sbjct: 522 ARENWLYEQLLGKIQAQLMVLQQTANALATLDVLANFAAQAMARN----YAKPQFREEPG 577
Query: 354 LAIDGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
L I+ GRHP +E++ H FI N+ +E + I+TGPNM GKSTY++Q +I ILA IG
Sbjct: 578 LVIEQGRHPTVEALSHEPFIANDADFNEQRRLHIITGPNMGGKSTYMRQTAIITILAHIG 637
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
C+VPA + +DRIFTR+G D+L S STFM EM ETA ++++ S +SLI+MDE+GR
Sbjct: 638 CFVPAKQACFGPIDRIFTRIGASDDLTSGRSTFMVEMTETAHILRHASNQSLILMDEVGR 697
Query: 473 ATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TS+ DG A+AW+ E+L + +K Y +FA+H L+ LA + N H V + +
Sbjct: 698 GTSTFDGLALAWAIGEYLATEVKGYCLFATHYFELTSLAEQFDNTVNSHLTAVEHQDSII 757
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
F Q+K GP YGL +A +AG+P+ VI A++
Sbjct: 758 FLHQVKPGPA-SQSYGLQVAALAGVPAVVITQAKA 791
>gi|421618424|ref|ZP_16059400.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri KOS6]
gi|409779516|gb|EKN59172.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri KOS6]
Length = 859
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 179/573 (31%), Positives = 286/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T G+RLL L +PL++ E +
Sbjct: 270 LDGASRRNLELDVNL------SGGRENTLQSVMDRCQTAMGSRLLTRWLNRPLRNREVLE 323
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQL L + +R+L + NA+
Sbjct: 324 ARQDSITCLLEYYRFEQLQPQLKDI-----GDLERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L ++D + L + +S+ + A + R +ID
Sbjct: 367 -----DLARLRDALAALPQLQAGMQDLVAPHLHELAKSISTYPELAELLARA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQYLMDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + ++ L A L LD++ N ++ RP F E + I+ G
Sbjct: 531 YDELLEMLIGHLAPLQESASALAELDVLSNLAERALNLD----LNRPRFVEQPCMHIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 587 RHPVVEQVLETPFVANDLGLDDATRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ D
Sbjct: 647 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ EHL L+A+T+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAEHLAKLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 798
>gi|406601765|emb|CCH46636.1| DNA mismatch repair protein [Wickerhamomyces ciferrii]
Length = 794
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 189/626 (30%), Positives = 318/626 (50%), Gaps = 32/626 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+T++++LE++E L GTS L+ L +TKT G R L+ N+LQPL D +
Sbjct: 197 MFIDSTTIKSLELLENLEDK-HGTS-----LYKFLNSTKTKMGERTLKNNILQPLTDKGS 250
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + ELM + + R K+ + F K S ++
Sbjct: 251 IVMRSGAVKELMEKNAVLLDV----RLLLKDLQDLDKLFALLLMKKGS-------GTEAT 299
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L++ +IL K A ++++L+ S LL I + +C + ++ I E I+ED
Sbjct: 300 HLVNQVILFKQAAVTAQKISQLLEGTTSPLLQQI-QDICGDPGITEVKDIIDECINEDCN 358
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A P R Q+ +A+K G +GL+DI+R+++ + + + + E + ++ +N+
Sbjct: 359 WASGPLDLRNQRMYAVKAGRNGLIDISRQAYKASVDQILQYIEEVNEAHENLQIEQSYNS 418
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
R+GF+L + D + +LP FI +TLEL N R A E + +E L
Sbjct: 419 RRGFFLKVQQLD-ESELPEVFINTKSKKTYKETTTLELVKANARLDDIAAEILMLSENVL 477
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L + I + VL + +E L +LD++ SFA T + D Y P T G L I +
Sbjct: 478 DDLTNEIVNYLPVLFMTSEALAILDLL-QSFAET--SLQWD-YIVPEIT--GILTIRSAK 531
Query: 361 HPILESIHNDFIPNNI-FISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HPIL+ + +FIPN I + E + ++TG NMSGKS Y++QV ++VI+AQ+GC VPA +
Sbjct: 532 HPILQKMIPNFIPNAICSVQETSRFQVITGTNMSGKSVYMKQVSILVIMAQMGCLVPAEY 591
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
++ + + + R+ VDN + SS+F TEM E V+++ E+SLI++DELGR +S +DG
Sbjct: 592 ASFPLYNNLRARL-CVDNFATTSSSFTTEMNEILCVIEDADEKSLIIIDELGRGSSLNDG 650
Query: 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHF-YVVIRNNRLDFKFQLKD 538
F I+ + CEHLL+ A ++H LS++ V H +N L +++
Sbjct: 651 FTISLAICEHLLNTNATIFLSTHFHKLSKIMGTKQGVLQNHMSSSASQNGTLKMNYRITS 710
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQR 598
G + YG+ +A VI A I+ ++ E ++N + Q+
Sbjct: 711 GIIDIRRYGVKIA-TKFFDQDVINRAYEISKKL---EELSADVNSIDEVQLAKERKILNL 766
Query: 599 LICLKYSNQDEESIRHALQNLKESFI 624
+ L+Y+ + +E R L +++ F+
Sbjct: 767 VKILQYAVEHDEVSRPVLLLIQDEFL 792
>gi|392299668|gb|EIW10761.1| Msh4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 878
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 181/574 (31%), Positives = 295/574 (51%), Gaps = 43/574 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VR LE++E SL+ L TT T G R LR ++LQPL D +
Sbjct: 265 MLIDSKTVRGLELVEN------KLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGS 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP---KETDRVLC--HFCFKPKKVTSKVLDVDN 115
I RL+ L+EL +N+ L L ++ P K R+LC H KP +
Sbjct: 319 IEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQ---------- 368
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEKYASIRKRIGE 173
I+ ++LLK L ++ L L D QS L++ + + N+ I K I
Sbjct: 369 ------RINYVLLLKETLQSVKSLKDALNDQLIQSRLISET-KKIFNNDAIMEIEKLINS 421
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I+ED + A Q+ +A+K +GLLD++R+ + + E + K+ N
Sbjct: 422 CINEDCVWASSAIQLLNQRSYAVKSDSNGLLDVSRQIYKEVKEEFFREVEDLTAKNKI-N 480
Query: 234 LKLPFNNRQGFYLSIPHK---DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
L +++ +GFYL I + D LP FI N I C+TL + N R K
Sbjct: 481 LDHNYDSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVME 540
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E + +E ++ L+D I +S L ++AE + +LD++ SF + + + YT P FT
Sbjct: 541 EILLLSEETVDELLDKIATHISELFMIAEAVAILDLVC-SFTYNLKE---NNYTIPIFTN 596
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILA 409
N L I RHP+LE + +F+PN I ++ ++++ I+TG NMSGKS YL+QV LI I+A
Sbjct: 597 N--LLIRDSRHPLLEKVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMA 654
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +PA + + V R+ R+ D++E SS F EMKE A+ + +++ +L+++DE
Sbjct: 655 QMGSGIPALYGSFPVFKRLHARVCN-DSMELTSSNFGFEMKEMAYFLDDINTETLLILDE 713
Query: 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-N 528
LGR +S +DGF ++ + EHLL +A ++H +++ ++ + P V LH V+ N N
Sbjct: 714 LGRGSSIADGFCVSLAVTEHLLRTEATVFLSTHFQDIPKIMSKKPAVSHLHMDAVLLNDN 773
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
+ +QL + + G+ + + P + E
Sbjct: 774 SVKMNYQLTQKSVAIENSGIRVVKKIFNPDIIAE 807
>gi|20807804|ref|NP_622975.1| DNA mismatch repair protein MutS [Thermoanaerobacter tengcongensis
MB4]
gi|44888228|sp|Q8RA71.1|MUTS_THETN RecName: Full=DNA mismatch repair protein MutS
gi|20516362|gb|AAM24579.1| MutS-like ATPases involved in mismatch repair, family 2
[Thermoanaerobacter tengcongensis MB4]
Length = 869
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 183/610 (30%), Positives = 319/610 (52%), Gaps = 53/610 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ ++RNLEI+E + +KK SL +L T T G RLL+ L +PL D +
Sbjct: 268 MGLDSNAIRNLEILESNRN-----KSKKGSLLGVLDRTVTPMGGRLLKKWLEEPLIDKDE 322
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++EL +N + L + L K + +R+ ++ VT K
Sbjct: 323 IEKRLDAVEELFNNYRERIELKELLNKV-YDLERLASKIVYQS--VTPK----------- 368
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I +K +L LP + +L S LL IY + + + + E+ID+ +
Sbjct: 369 ----DFISIKLSLQNLPKIKNILSKFSSRLLKEIYEKL-------DVLQDVYELIDKSI- 416
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + ++ IK G + ++D R++ + + NL RE+ + NL++ +N
Sbjct: 417 --KDDPSNQLKEGNIIKDGYNEMVDKLRKASTEGKNWIANLEADEREKTGIKNLRIGYNK 474
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + +I ++P +I+ N T EL + A E I E
Sbjct: 475 VFGYYIEVTKSNIP-QVPDRYIRKQTLANAERYVTPELKEIE-ETILGAEEKLIELEY-- 530
Query: 301 EALVDAIREDVSVLTL----LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
L + IRE V + + A+ + ++D+++ SFA T ++Y +P + I
Sbjct: 531 -ELFNEIREKVELQIVRIQNTAKYIAIIDVLI-SFAEVAET---NKYVKPIVDYEDRIVI 585
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E+I ++ F+ N+I I ++I+TGPNM+GKSTY++QV LIV++AQ+GC+V
Sbjct: 586 KEGRHPVVETISDEGFVANDIDIGPENPIMIITGPNMAGKSTYMRQVALIVLMAQVGCFV 645
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ I +VD+IFTR+G D++ + STFM EM E A ++ + + +SLI++DE+GR TS
Sbjct: 646 PASYARIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILHSATSKSLIILDEVGRGTS 705
Query: 476 SSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IA + E++ +KA T+FA+H L++L V+ + V R + + F
Sbjct: 706 TYDGMSIAQAVIEYIHEKIKAKTLFATHYHELTKLEGKLRGVRNFNVSVEEREDDIIFLH 765
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME----INCLQYKQIQ 590
++ G YG+ ++++AGLP ++IE A+ I + + + + E ++ + QI
Sbjct: 766 KIVPGGSD-RSYGIQVSKLAGLPYSIIERAKEILEALERDKAVKNELEEAVSQFAFTQID 824
Query: 591 MLYHAAQRLI 600
+ A LI
Sbjct: 825 IFSSAKDALI 834
>gi|14318519|ref|NP_116652.1| MutS family protein MSH4 [Saccharomyces cerevisiae S288c]
gi|308153466|sp|P40965.2|MSH4_YEAST RecName: Full=MutS protein homolog 4
gi|836751|dbj|BAA09235.1| MutS protein homolog 4 [Saccharomyces cerevisiae]
gi|285811891|tpg|DAA12436.1| TPA: MutS family protein MSH4 [Saccharomyces cerevisiae S288c]
Length = 878
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 181/574 (31%), Positives = 295/574 (51%), Gaps = 43/574 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VR LE++E SL+ L TT T G R LR ++LQPL D +
Sbjct: 265 MLIDSKTVRGLELVEN------KLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGS 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP---KETDRVLC--HFCFKPKKVTSKVLDVDN 115
I RL+ L+EL +N+ L L ++ P K R+LC H KP +
Sbjct: 319 IEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQ---------- 368
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEKYASIRKRIGE 173
I+ ++LLK L ++ L L D QS L++ + + N+ I K I
Sbjct: 369 ------RINYVLLLKETLQSVKSLKDALNDQLIQSRLISET-KKIFNNDAIMEIEKLINS 421
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I+ED + A Q+ +A+K +GLLD++R+ + + E + K+ N
Sbjct: 422 CINEDCVWASSAIQLLNQRSYAVKSDSNGLLDVSRQIYKEVKEEFFREVEDLTAKNKI-N 480
Query: 234 LKLPFNNRQGFYLSIPHK---DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
L +++ +GFYL I + D LP FI N I C+TL + N R K
Sbjct: 481 LDHNYDSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVME 540
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E + +E ++ L+D I +S L ++AE + +LD++ SF + + + YT P FT
Sbjct: 541 EILLLSEETVDELLDKIATHISELFMIAEAVAILDLVC-SFTYNLKE---NNYTIPIFTN 596
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILA 409
N L I RHP+LE + +F+PN I ++ ++++ I+TG NMSGKS YL+QV LI I+A
Sbjct: 597 N--LLIRDSRHPLLEKVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMA 654
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +PA + + V R+ R+ D++E SS F EMKE A+ + +++ +L+++DE
Sbjct: 655 QMGSGIPALYGSFPVFKRLHARVCN-DSMELTSSNFGFEMKEMAYFLDDINTETLLILDE 713
Query: 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-N 528
LGR +S +DGF ++ + EHLL +A ++H +++ ++ + P V LH V+ N N
Sbjct: 714 LGRGSSIADGFCVSLAVTEHLLRTEATVFLSTHFQDIPKIMSKKPAVSHLHMDAVLLNDN 773
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
+ +QL + + G+ + + P + E
Sbjct: 774 SVKMNYQLTQKSVAIENSGIRVVKKIFNPDIIAE 807
>gi|89092115|ref|ZP_01165070.1| DNA mismatch repair protein [Neptuniibacter caesariensis]
gi|89083850|gb|EAR63067.1| DNA mismatch repair protein [Oceanospirillum sp. MED92]
Length = 854
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 182/566 (32%), Positives = 293/566 (51%), Gaps = 43/566 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + +NLEI + L T L ++ +T G+RLLR L +P++D T+
Sbjct: 268 LDAATRKNLEIDQNLSGGFDNT------LAKVIDKCRTPMGSRLLRRWLHRPIQDRATLL 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L +N + F + + L+ + +R+L + +++ D++
Sbjct: 322 ARQASIQWLQNNYK-FEEIQKPLKNI-GDIERILARIALR----SARPRDLER------- 368
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
LK+AL +LP L LK + L++ + + + + + + + +ID
Sbjct: 369 ------LKSALASLPELQSQLKTTDAPLISELAIQISQFPELSDLL--LKAIIDNP---- 416
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G D LD R + + L + RE + LK+ +N
Sbjct: 417 --PVVIRDGGVIA--EGFDEELDELRGISENAGAYLIELETRERERTGIATLKVGYNRVH 472
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ I K +LP+ +I+ N T EL + SA R + E
Sbjct: 473 GYFIEI-GKAQNAELPAEYIRRQTLKNAERYITPELKEFEDKALSAKSRALAREKALYEQ 531
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++S L + + LD ++N+ A ST +D Y P TE + I GRHP
Sbjct: 532 LLETLAAELSPLQDSSAAIAELD-VLNNLAERAST--LD-YVPPTLTEEPQIKIQRGRHP 587
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E++ +D F+ N++ + M+I+TGPNM GKSTY++Q LI +LA IG YVPA +T
Sbjct: 588 VVETVLDDPFVANDLDLDNERKMLIITGPNMGGKSTYMRQAALITLLAHIGSYVPASAAT 647
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +VD+IFTRMG+ D+L STFM EM ETA +M N + RSL++MDE+GR TS+ DG +
Sbjct: 648 IGIVDKIFTRMGSSDDLAGGRSTFMVEMTETANIMHNATARSLVLMDEVGRGTSTFDGLS 707
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+C E+L A+T+FA+H L+ L NV +H V N+ + F ++KDGP
Sbjct: 708 LAWACAENLARETNAFTLFATHYFELTSLPDQAANVFNVHLTAVEHNDHIVFLHEVKDGP 767
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARS 566
YGL +A++AG+P VIE A++
Sbjct: 768 ASQ-SYGLQVAQLAGVPLNVIEQAKA 792
>gi|323348773|gb|EGA83013.1| Msh4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 878
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 181/574 (31%), Positives = 295/574 (51%), Gaps = 43/574 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VR LE++E SL+ L TT T G R LR ++LQPL D +
Sbjct: 265 MLIDSKTVRGLELVEN------KLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGS 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP---KETDRVLC--HFCFKPKKVTSKVLDVDN 115
I RL+ L+EL +N+ L L ++ P K R+LC H KP +
Sbjct: 319 IEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQ---------- 368
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEKYASIRKRIGE 173
I+ ++LLK L ++ L L D QS L++ + + N+ I K I
Sbjct: 369 ------RINYVLLLKETLQSVKSLKDALNDQFFQSRLISET-KKIFNNDAIMEIEKLINS 421
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I+ED + A Q+ +A+K +GLLD++R+ + + E + K+ N
Sbjct: 422 CINEDCVWASSAIQLLNQRSYAVKSDSNGLLDVSRQIYKEVKEEFFREVEDLTAKNKI-N 480
Query: 234 LKLPFNNRQGFYLSIPHK---DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
L +++ +GFYL I + D LP FI N I C+TL + N R K
Sbjct: 481 LDHNYDSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVME 540
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E + +E ++ L+D I +S L ++AE + +LD++ SF + + + YT P FT
Sbjct: 541 EILLLSEETVDELLDKIATHISELFMIAEAVAILDLVC-SFTYNLKE---NNYTIPIFTN 596
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILA 409
N L I RHP+LE + +F+PN I ++ ++++ I+TG NMSGKS YL+QV LI I+A
Sbjct: 597 N--LLIRDSRHPLLEKVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMA 654
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +PA + + V R+ R+ D++E SS F EMKE A+ + +++ +L+++DE
Sbjct: 655 QMGSGIPALYGSFPVFKRLHARVCN-DSMELTSSNFGFEMKEMAYFLDDINTETLLILDE 713
Query: 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-N 528
LGR +S +DGF ++ + EHLL +A ++H +++ ++ + P V LH V+ N N
Sbjct: 714 LGRGSSIADGFCVSLAVTEHLLRTEATVFLSTHFQDIPKIMSKKPAVSHLHMDAVLLNDN 773
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
+ +QL + + G+ + + P + E
Sbjct: 774 SVKMNYQLTQKSVAIENSGIKVVKKIFNPDIIAE 807
>gi|151940759|gb|EDN59146.1| MutS-like protein [Saccharomyces cerevisiae YJM789]
Length = 878
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 181/574 (31%), Positives = 295/574 (51%), Gaps = 43/574 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VR LE++E SL+ L TT T G R LR ++LQPL D +
Sbjct: 265 MLIDSKTVRGLELVEN------KLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGS 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP---KETDRVLC--HFCFKPKKVTSKVLDVDN 115
I RL+ L+EL +N+ L L ++ P K R+LC H KP +
Sbjct: 319 IEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQ---------- 368
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEKYASIRKRIGE 173
I+ ++LLK L ++ L L D QS L++ + + N+ I K I
Sbjct: 369 ------RINYVLLLKETLQSVKSLKDALNDQLIQSRLISET-KKIFNNDAIMEIEKLINS 421
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I+ED + A Q+ +A+K +GLLD++R+ + + E + K+ N
Sbjct: 422 CINEDCVWASSAIQLLNQRSYAVKSDSNGLLDVSRQIYKEVKEEFFREVEDLTAKNKI-N 480
Query: 234 LKLPFNNRQGFYLSIPHK---DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
L +++ +GFYL I + D LP FI N I C+TL + N R K
Sbjct: 481 LDHNYDSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVME 540
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E + +E ++ L+D I +S L ++AE + +LD++ SF + + + YT P FT
Sbjct: 541 EILLLSEETVDELLDKIATHISELFMIAEAVAILDLVC-SFTYNLKE---NNYTIPIFTN 596
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILA 409
N L I RHP+LE + +F+PN I ++ ++++ I+TG NMSGKS YL+QV LI I+A
Sbjct: 597 N--LLIRDSRHPLLEKVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMA 654
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +PA + + V R+ R+ D++E SS F EMKE A+ + +++ +L+++DE
Sbjct: 655 QMGSGIPALYGSFPVFKRLHARVCN-DSMELTSSNFGFEMKEMAYFLDDINTETLLILDE 713
Query: 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-N 528
LGR +S +DGF ++ + EHLL +A ++H +++ ++ + P V LH V+ N N
Sbjct: 714 LGRGSSIADGFCVSLAVTEHLLRTEATVFLSTHFQDIPKIMSKKPAVSHLHMDAVLLNDN 773
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
+ +QL + + G+ + + P + E
Sbjct: 774 SVKMNYQLTQKSVAIENSGIRVVKKIFNPDIIAE 807
>gi|167037586|ref|YP_001665164.1| DNA mismatch repair protein MutS [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116001|ref|YP_004186160.1| DNA mismatch repair protein MutS [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856420|gb|ABY94828.1| DNA mismatch repair protein MutS [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929092|gb|ADV79777.1| DNA mismatch repair protein MutS [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 867
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 187/610 (30%), Positives = 331/610 (54%), Gaps = 53/610 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +++NLEI+E + +KK SL +L T T G RLL+ L +PL E
Sbjct: 266 MGLDSNAIKNLEILESNRN-----KSKKGSLLGVLDKTVTPMGGRLLKKWLEEPLLSKEH 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RL+ ++EL ++ + L QFL K + +++ SK+ V + +
Sbjct: 321 IDARLEAVEELFNDYKNRQDLKQFLNK------------IYDLERLASKI--VYQSINPK 366
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
IS +K +L LP + ++L+ S LL + +CE K+ +++ I E+ID+ +
Sbjct: 367 DFIS----IKLSLQNLPYIKEILEKFNSRLL----KEICE--KFDTLQD-IYELIDKSI- 414
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + ++ IKGG + ++D R++ + + NL + RE+ + NL++ +N
Sbjct: 415 --KDDPSTQLKEGNIIKGGYNEIVDKLRKASTEGKNWIANLEAEEREKTGIKNLRIGYNK 472
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + +I ++P +I+ N T EL + A E I E
Sbjct: 473 VFGYYIEVTKSNIP-QVPERYIRKQTLANAERYVTPELKEIE-ETILGAEEKLIELEY-- 528
Query: 301 EALVDAIREDVSVLTL----LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
L + IRE V + + A+ + +D+++ SFA T +RY +P + + I
Sbjct: 529 -QLFNEIREKVELQIVRIQNTAKYIATIDVLI-SFAEVAET---NRYIKPIVDYSDRIVI 583
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E+I ++ F+ N+I I ++I+TGPNM+GKSTY++QV LIV++AQIG +V
Sbjct: 584 KEGRHPVIETISDESFVANDIDIGPENPIMIITGPNMAGKSTYMRQVALIVLMAQIGSFV 643
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ I +VD+IFTR+G D++ + STFM EM E A ++++ + +SLI++DE+GR TS
Sbjct: 644 PASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTS 703
Query: 476 SSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IA + E++ +KA T+FA+H L++L V+ + V R + + F
Sbjct: 704 TYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGVRNYNVSVEEREDDIIFLR 763
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI----NCLQYKQIQ 590
++ G YG+ ++++AGLP +++E A+ I + + +V + E+ L + QI
Sbjct: 764 KIVPGGAD-KSYGIQVSKLAGLPYSIVERAKEILNSLENDKVIKSELENASQQLAFTQID 822
Query: 591 MLYHAAQRLI 600
+ A LI
Sbjct: 823 IFSTAKDSLI 832
>gi|563198|gb|AAA65234.1| Msh4p [Saccharomyces cerevisiae]
Length = 878
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 181/574 (31%), Positives = 295/574 (51%), Gaps = 43/574 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VR LE++E SL+ L TT T G R LR ++LQPL D +
Sbjct: 265 MLIDSKTVRGLELVEN------KLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGS 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP---KETDRVLC--HFCFKPKKVTSKVLDVDN 115
I RL+ L+EL +N+ L L ++ P K R+LC H KP +
Sbjct: 319 IEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQ---------- 368
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEKYASIRKRIGE 173
I+ ++LLK L ++ L L D QS L++ + + N+ I K I
Sbjct: 369 ------RINYVLLLKETLQSVKSLKDALNDQLIQSRLISET-KKIFNNDAIMEIEKLINS 421
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I+ED + A Q+ +A+K +GLLD++R+ + + E + K+ N
Sbjct: 422 CINEDCVWASSAIQLLNQRSYAVKSDSNGLLDVSRQIYKEVKEEFFREVEDLTAKNKI-N 480
Query: 234 LKLPFNNRQGFYLSIPHK---DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
L +++ +GFYL I + D LP FI N I C+TL + N R K
Sbjct: 481 LDHNYDSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVME 540
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E + +E ++ L+D I +S L ++AE + +LD++ SF + + + YT P FT
Sbjct: 541 EILLLSEETVDELLDKIATHISELFMIAEAVAILDLVC-SFTYNLKE---NNYTIPIFTN 596
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILA 409
N L I RHP+LE + +F+PN I ++ ++++ I+TG NMSGKS YL+QV LI I+A
Sbjct: 597 N--LLIRDSRHPLLEKVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMA 654
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +PA + + V R+ R+ D++E SS F EMKE A+ + +++ +L+++DE
Sbjct: 655 QMGSGIPALYGSFPVFKRLHARVCN-DSMELTSSNFGFEMKEMAYFLDDINTETLLILDE 713
Query: 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-N 528
LGR +S +DGF ++ + EHLL +A ++H +++ ++ + P V LH V+ N N
Sbjct: 714 LGRGSSIADGFCVSLAVTEHLLRTEATVFLSTHFQDIPKIMSKKPAVSHLHMDAVLLNDN 773
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
+ +QL + + G+ + + P + E
Sbjct: 774 SVKMNYQLTQKSVAIENSGIRVVKKIFNPDIIAE 807
>gi|153853167|ref|ZP_01994576.1| hypothetical protein DORLON_00561 [Dorea longicatena DSM 13814]
gi|149753953|gb|EDM63884.1| DNA mismatch repair protein MutS [Dorea longicatena DSM 13814]
Length = 876
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 184/584 (31%), Positives = 297/584 (50%), Gaps = 49/584 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+++ RNLE+ E L K+ SL +L TKT G R LR + QPL D
Sbjct: 261 MLLDSSTRRNLELCETLRD-----KQKRGSLLWVLDKTKTAMGARTLRKYIEQPLIDKNA 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD +DELM N + ++L + +R++C ++ N +
Sbjct: 316 IEKRLDAVDELMKNAISREEIREYLSPV-YDLERLVCKITYQSA----------NPR--- 361
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I +T+L LP + +L D Q+ LL +Y E + + K + + I ED
Sbjct: 362 ----DLIAFQTSLAMLPHIKCILSDMQTPLLKELYE---ELDTLEDLCKLVSDSIRED-- 412
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A ++ IK G + +D R + D + + L RE+ + NL++ +N
Sbjct: 413 ----PPIA-MKEGGIIKDGYNAEVDKLRNAKSDGKDWLAKLETDEREKTGIKNLRIKYNK 467
Query: 241 RQGFYLSIPH--KDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + + KD+ +P + + N EL L A + Y
Sbjct: 468 VFGYYLEVTNSFKDL---VPDYYTRKQTLANAERYIIPELKELEDTILGAEDKLYALEYQ 524
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ D I ++V + A+ + LD +FA + Y RP + G + I
Sbjct: 525 LYSEVRDTIGKEVVRIQKTAKAIAKLD----AFASLALVAEQNNYVRPKMNDKGLIDIKD 580
Query: 359 GRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E I ND FI N+ ++++ + + I+TGPNM+GKSTY++Q LIV++AQIG +V
Sbjct: 581 GRHPVVEKMISNDMFICNDTYLNDKKDRISIITGPNMAGKSTYMRQTALIVLMAQIGSFV 640
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVDRIFTR+G D+L S STFM EM E A +++N + +SL+++DE+GR TS
Sbjct: 641 PASSANIGVVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRGTS 700
Query: 476 SSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAW+ E++ + L A T+FA+H L+EL NV V + + + F
Sbjct: 701 TFDGLSIAWAVIEYISNSKLLGAKTLFATHYHELTELEGKIENVNNYCIAVKEKGDDIIF 760
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
++ G YG+ +A +AG+P +V + A+ I + + +V
Sbjct: 761 LRKIVKGGAD-KSYGIQVARLAGVPQSVTDRAKEIVEELVQADV 803
>gi|255722281|ref|XP_002546075.1| hypothetical protein CTRG_00856 [Candida tropicalis MYA-3404]
gi|240136564|gb|EER36117.1| hypothetical protein CTRG_00856 [Candida tropicalis MYA-3404]
Length = 803
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 187/574 (32%), Positives = 302/574 (52%), Gaps = 37/574 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++R+LE+IE S GT+ LF L T G RLL+ +LLQPL +
Sbjct: 192 MLIDINTIRDLELIES--SGENGTT-----LFSFLNKCVTKMGQRLLKTSLLQPLTHENS 244
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD + ELM+NE + G+ L++ ++ ++V F PK +T D A
Sbjct: 245 IKLRLDAVHELMTNEDILIGIRTLLKQ-TQDLEKVFASF-LDPKCMTGH----DQA---- 294
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I++IILLKT+L+ + K L S LL I + + E++ I + + ED
Sbjct: 295 --INNIILLKTSLEKSFSMNKSLSFMHSHLLVQI-KQILEHDSIRIALDLINQYLREDCQ 351
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIAR----RSFCDTSEAVHNLANKYREELKLPNLKL 236
A Q+ AIK G++GLLD++R R + +E V NL+ +EL++ ++
Sbjct: 352 WANSSIELANQRANAIKPGVNGLLDVSRKIRERLLEEVAEYVENLS----DELEIA-IEH 406
Query: 237 PFNNRQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ N +GF++ I I LP FI +K I C+T++L + R E
Sbjct: 407 RYENHRGFFIKIKEDRIGSSGLPDGFINKIKKRKFIECTTIDLMKQSSRYYDILSEITTL 466
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+E L I E + + +++E + LD++ SFA+ S + Y P F ++ +
Sbjct: 467 NSTIIEDLYGKINEYMPIFLMVSEAIGTLDLLC-SFAYFTSIQK-SSYVCPEFGQD--VT 522
Query: 356 IDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I HPIL + +DF+PNN + E + ++TGPNMSGKS YL+Q +VI++Q+G +
Sbjct: 523 ILRSYHPILSTTVSDFVPNNYSCNYEISRFHVITGPNMSGKSVYLRQFAYLVIMSQMGIF 582
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA F+ +++ I++++ + D E N+S+F TEM ETA V++N + SL+++DELGR +
Sbjct: 583 VPAEFAKMKIFKSIYSKL-SCDTHEINASSFSTEMSETANVLKNSNHDSLVILDELGRGS 641
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
S +DGF+I + E LL + A+ ++H +++E+ + V H N L K+
Sbjct: 642 SFADGFSICLAILEQLLHMGAFVFTSTHFRDIAEILSNKSCVVTSHMETSELNGNLQMKY 701
Query: 535 QLKDGPRHVPHYGLLLAEVAG-LPSTVIETARSI 567
L G YG+ AE + LP +I+ A+ I
Sbjct: 702 NLVSGRTDQSGYGIRYAEHSQLLPKEMIDEAKEI 735
>gi|260549540|ref|ZP_05823758.1| mismatch repair ATPase [Acinetobacter sp. RUH2624]
gi|424056166|ref|ZP_17793687.1| DNA mismatch repair protein mutS [Acinetobacter nosocomialis
Ab22222]
gi|425739695|ref|ZP_18857891.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-487]
gi|260407333|gb|EEX00808.1| mismatch repair ATPase [Acinetobacter sp. RUH2624]
gi|407441612|gb|EKF48117.1| DNA mismatch repair protein mutS [Acinetobacter nosocomialis
Ab22222]
gi|425496089|gb|EKU62231.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-487]
Length = 881
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRSQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDAQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRIKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|190406570|gb|EDV09837.1| meiosis specific protein [Saccharomyces cerevisiae RM11-1a]
gi|256268866|gb|EEU04217.1| Msh4p [Saccharomyces cerevisiae JAY291]
gi|259146189|emb|CAY79448.1| Msh4p [Saccharomyces cerevisiae EC1118]
gi|365765840|gb|EHN07345.1| Msh4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 878
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 181/574 (31%), Positives = 295/574 (51%), Gaps = 43/574 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VR LE++E SL+ L TT T G R LR ++LQPL D +
Sbjct: 265 MLIDSKTVRGLELVEN------KLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGS 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP---KETDRVLC--HFCFKPKKVTSKVLDVDN 115
I RL+ L+EL +N+ L L ++ P K R+LC H KP +
Sbjct: 319 IEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQ---------- 368
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEKYASIRKRIGE 173
I+ ++LLK L ++ L L D QS L++ + + N+ I K I
Sbjct: 369 ------RINYVLLLKETLQSVKSLKDALNDQFFQSRLISET-KKIFNNDAIMEIEKLINS 421
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I+ED + A Q+ +A+K +GLLD++R+ + + E + K+ N
Sbjct: 422 CINEDCVWASSAIQLLNQRSYAVKSDSNGLLDVSRQIYKEVKEEFFREVEDLTAKNKI-N 480
Query: 234 LKLPFNNRQGFYLSIPHK---DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
L +++ +GFYL I + D LP FI N I C+TL + N R K
Sbjct: 481 LDHNYDSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVME 540
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E + +E ++ L+D I +S L ++AE + +LD++ SF + + + YT P FT
Sbjct: 541 EILLLSEETVDELLDKIATHISELFMIAEAVAILDLVC-SFTYNLKE---NNYTIPIFTN 596
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILA 409
N L I RHP+LE + +F+PN I ++ ++++ I+TG NMSGKS YL+QV LI I+A
Sbjct: 597 N--LLIRDSRHPLLEKVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMA 654
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +PA + + V R+ R+ D++E SS F EMKE A+ + +++ +L+++DE
Sbjct: 655 QMGSGIPALYGSFPVFKRLHARVCN-DSMELTSSNFGFEMKEMAYFLDDINTETLLILDE 713
Query: 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-N 528
LGR +S +DGF ++ + EHLL +A ++H +++ ++ + P V LH V+ N N
Sbjct: 714 LGRGSSIADGFCVSLAVTEHLLRTEATVFLSTHFQDIPKIMSKKPAVSHLHMDAVLLNDN 773
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
+ +QL + + G+ + + P + E
Sbjct: 774 SVKMNYQLTQKSVAIENSGIKVVKKIFNPDIIAE 807
>gi|86610157|ref|YP_478919.1| DNA mismatch repair protein MutS [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|123500848|sp|Q2JIA6.1|MUTS_SYNJB RecName: Full=DNA mismatch repair protein MutS
gi|86558699|gb|ABD03656.1| DNA mismatch repair protein MutS [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 884
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 180/586 (30%), Positives = 299/586 (51%), Gaps = 64/586 (10%)
Query: 3 IDATSVRNLEIIEPL-HSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+DA + RNLE+ + + A G SL +L ++T G R LR LLQPL+D E I
Sbjct: 299 LDAQTRRNLELTQTIREGAFVG------SLLWVLDHSRTAMGGRTLRRWLLQPLRDSEQI 352
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQT 121
R D + EL+ N L L L + +++ ++V +
Sbjct: 353 RLRQDTIQELLENPSLRARLGSLLDSL------------YDLERLANRVGSGTANPR--- 397
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
++ L ++L LP LA+++ +A++ LL ++ ++ +G I+ +L
Sbjct: 398 ---ELVALGSSLGKLPQLAELVGEAKTPLLQSL-------QQVDPALVDLGRRIEHTLLP 447
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
+ P + + I+ G+D LD R+ + V L R+ +P LK+ FN
Sbjct: 448 SPPPILT---EGGLIRPGVDPELDRLRQQVEQDRQWVAQLEKSERDRTGIPTLKVGFNKA 504
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG-------ECYI 294
G+YLSI ++P +I+ N T EL R +A E ++
Sbjct: 505 FGYYLSISRAKAH-QVPKEYIRKQTLTNEERFITPELKEKEARILTAQTDINQREYELFV 563
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
+ + +AIR+ L + + L ++ V YTRP T + L
Sbjct: 564 QLRQEAGSRAEAIRQVAQTLAAVDALFGLAEVAVQQG-----------YTRPLLTTDRRL 612
Query: 355 AIDGGRHPILES--IHNDFIPNNIFISE--AANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
I+ GRHP++E F+PN++ + +++++TGPNMSGKSTYL+Q+ LI ILAQ
Sbjct: 613 IIEEGRHPVVEKSLPQGLFVPNSVQLGSPHGPDLIVLTGPNMSGKSTYLRQIGLIQILAQ 672
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G +VPA + + + DR+FTR+G VD+L + STFM EM ETA ++ + ERSL+++DE+
Sbjct: 673 MGSFVPARRAELGLCDRVFTRIGAVDDLATGQSTFMVEMNETANILNHAGERSLVLLDEI 732
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--N 527
GR T++ DG +IAW+ E+L + ++A T+FA+H L++L T+ PNV +F VV++
Sbjct: 733 GRGTATFDGLSIAWAVAEYLATQVRARTVFATHYHELNQLETLLPNVA--NFQVVVKELQ 790
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+R+ F Q++ G YG+ + +AGLP VI+ A + + + K
Sbjct: 791 DRIIFLHQVQPGGADR-SYGIEVGRMAGLPQPVIQRAEQVLALVEK 835
>gi|153868911|ref|ZP_01998639.1| MutS 1 protein [Beggiatoa sp. PS]
gi|152074519|gb|EDN71365.1| MutS 1 protein [Beggiatoa sp. PS]
Length = 854
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 186/579 (32%), Positives = 305/579 (52%), Gaps = 47/579 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE L S + G ++ +L ++L T G RLLR L +PL+DIE +
Sbjct: 269 MDAASRRNLE----LDSRIIG--QREHTLINILDECATPMGGRLLRRWLHRPLRDIEILR 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + EL+ + + L Q LR + +R+L K +++ D+
Sbjct: 323 ARHHSISELLQQQSVDI-LYQQLRAI-GDIERILTRVALK----SARPRDLSQ------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+TAL LP L K L+ S L ++ + + + +++ R +I+
Sbjct: 370 ------LRTALSTLPELQKHLQPFNSNHLTHLAQQIGAFPELSTLLIRA--IIE------ 415
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ P + R A G D LD R + + + NL ++ RE + NLK+ +N
Sbjct: 416 KPPMLVRDGGVIA--PGYDQELDELRGLKENAGQYLVNLESRERERTGIANLKVGYNRIH 473
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ I + K+P + Q +K T EL + SA R +
Sbjct: 474 GYYIEISRTQV-NKIPPDYTRRQTLKAAER--YITQELKHFEDKVLSANERALKREKYLY 530
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L+D + E ++ L + L LD ++N+FA T ++ P FT+ + I GR
Sbjct: 531 DLLLDKVLESLTELQASSAALAELD-VLNNFAERADTL---KFYPPEFTDKECIEILEGR 586
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
H ++E++ ++ FIPN++ ++ M+I+T PNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 HLVVEAVQDEPFIPNDLKLNHQRRMLILTSPNMGGKSTYMRQTALIVLLAHIGSFVPAQQ 646
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ I +D IFTR+G D+L STFM EM ETA ++ N + SL++MDE+GR TS+ DG
Sbjct: 647 AIIGPIDAIFTRIGASDDLAGGRSTFMVEMTETANILHNATHNSLVLMDEIGRGTSTFDG 706
Query: 480 FAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
++A++C E+L +LKAYT+FA+H L+ L + N+ +H + +N++L F +KD
Sbjct: 707 LSLAYACAEYLADTLKAYTLFATHYFELTHLPEQFHNIANVHLEAIEQNDKLIFIHTIKD 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
GP + YGL +A +AG+P V+ AR ++ ++++K
Sbjct: 767 GPAN-KSYGLQVALLAGVPKKVVNRARIRLKQLEEQQLK 804
>gi|207345677|gb|EDZ72424.1| YFL003Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 832
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 181/574 (31%), Positives = 295/574 (51%), Gaps = 43/574 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VR LE++E SL+ L TT T G R LR ++LQPL D +
Sbjct: 219 MLIDSKTVRGLELVEN------KLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGS 272
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP---KETDRVLC--HFCFKPKKVTSKVLDVDN 115
I RL+ L+EL +N+ L L ++ P K R+LC H KP +
Sbjct: 273 IEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQ---------- 322
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEKYASIRKRIGE 173
I+ ++LLK L ++ L L D QS L++ + + N+ I K I
Sbjct: 323 ------RINYVLLLKETLQSVKSLKDALNDQFFQSRLISET-KKIFNNDAIMEIEKLINS 375
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I+ED + A Q+ +A+K +GLLD++R+ + + E + K+ N
Sbjct: 376 CINEDCVWASSAIQLLNQRSYAVKSDSNGLLDVSRQIYKEVKEEFFREVEDLTAKNKI-N 434
Query: 234 LKLPFNNRQGFYLSIPHK---DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
L +++ +GFYL I + D LP FI N I C+TL + N R K
Sbjct: 435 LDHNYDSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVME 494
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E + +E ++ L+D I +S L ++AE + +LD++ SF + + + YT P FT
Sbjct: 495 EILLLSEETVDELLDKIATHISELFMIAEAVAILDLVC-SFTYNLKE---NNYTIPIFTN 550
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILA 409
N L I RHP+LE + +F+PN I ++ ++++ I+TG NMSGKS YL+QV LI I+A
Sbjct: 551 N--LLIRDSRHPLLEKVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMA 608
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +PA + + V R+ R+ D++E SS F EMKE A+ + +++ +L+++DE
Sbjct: 609 QMGSGIPALYGSFPVFKRLHARVCN-DSMELTSSNFGFEMKEMAYFLDDINTETLLILDE 667
Query: 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-N 528
LGR +S +DGF ++ + EHLL +A ++H +++ ++ + P V LH V+ N N
Sbjct: 668 LGRGSSIADGFCVSLAVTEHLLRTEATVFLSTHFQDIPKIMSKKPAVSHLHMDAVLLNDN 727
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
+ +QL + + G+ + + P + E
Sbjct: 728 SVKMNYQLTQKSVAIENSGIKVVKKIFNPDIIAE 761
>gi|406981178|gb|EKE02687.1| hypothetical protein ACD_20C00346G0014 [uncultured bacterium]
Length = 863
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 184/585 (31%), Positives = 309/585 (52%), Gaps = 53/585 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+++DA + RNLE+++ + +N K SL + T T G RLLR + QPLKD+
Sbjct: 290 VSMDANTRRNLELVQTVRD-----NNYKGSLLWAIDKTCTNMGLRLLRKWIQQPLKDVNK 344
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I +R + ++EL+ N +L +S L K + +++ +++ +N ++
Sbjct: 345 IKSRQNAVEELLENSKLRLEISSLLDK------------TYDIERLATRI--SNNTANAR 390
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I+ LK +L LP K+L +A+S L+ E ++SI +R I E+
Sbjct: 391 DFIA----LKDSLKLLPEFGKLLSNAKSPFLSVFAEVKEELVDFSSIVER---TIAEN-- 441
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V ++ I+ G+ LD + E + N +E+ + +LK+ ++
Sbjct: 442 ----PPVG-LKEGNLIRRGVSEELDYLKELLTGGREWLTKFENDEKEKTGVRSLKVGYSK 496
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+++ + H + +P +I+ N T EL SA
Sbjct: 497 TFGYFIEVTHANTN-LVPDYYIRKQTLTNAERYITPELKEHETEVLSAETRSIDLEYQIF 555
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFTENGPLAIDGG 359
L + +E V + +A+ LC LD+++ SFA+ V+ Y +P E+ L I G
Sbjct: 556 SDLREYAKEFVQPMREIAKALCALDVLL-SFANV----AVEFNYVKPEIDESYDLLIKEG 610
Query: 360 RHPILESIH--NDFIPNN-------IFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
RHP++E + ++PN+ + +I+TGPNM+GKSTY++Q LIVILAQ
Sbjct: 611 RHPVIEKLLPLGKYVPNDLDSKGGDVGSQNTCQFMILTGPNMAGKSTYMRQNALIVILAQ 670
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + I +VD+IFTR+G VD+L + STFM EM ETA ++ + ++RSLI++DE+
Sbjct: 671 IGSFVPAKAAKIGIVDKIFTRVGAVDDLSTGQSTFMVEMNETALILNSATDRSLILLDEI 730
Query: 471 GRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG AIAWS E+++ ++KA TIFA+H ++ + YP +I ++ V +R N
Sbjct: 731 GRGTSTYDGVAIAWSVAEYIVENIKARTIFATHYHEMNVMCERYP--QIANYQVTVRENN 788
Query: 530 LDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITK 573
+ +F + P YG+ +A++AGLP++VI A ++ SR+ K
Sbjct: 789 HEIEFLRQVIPGGTNRSYGIQVAKMAGLPNSVISRAENLMSRMQK 833
>gi|388581960|gb|EIM22266.1| hypothetical protein WALSEDRAFT_68261 [Wallemia sebi CBS 633.66]
Length = 809
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 165/543 (30%), Positives = 291/543 (53%), Gaps = 33/543 (6%)
Query: 43 GTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCF 101
G RLLR+++LQPL D + I RLD + EL+ N + + + + D++L
Sbjct: 166 GRRLLRSSILQPLSDAKIIENRLDAIQELLLNADILNAIRSSFKSLKGIDLDKLLMAISK 225
Query: 102 KPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCEN 161
K T++ +V+ IS ++ +++A+ A+ + L A+S LL + R+ +
Sbjct: 226 DENKSTAQDHEVEKR------ISQLLTIRSAIHAISNIYYALDGAKSSLLTTL-RNDLHD 278
Query: 162 EKYASIRKRIGEVIDEDV-LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHN 220
+ + I I E I++DV L AR + +AIK LLD+AR ++ + + +
Sbjct: 279 DAFNCIISAIDENIEQDVTLGKSGSLAARNAKIYAIKSKQCELLDVAREAYRENLDDLFA 338
Query: 221 LANKYREELKLPNLKLPFNNRQGFYLSIPHKDI-QGKLPSTFIQVVKHG------NN--- 270
L+ KY E LP NN F+L++ D+ LP FI V K+G NN
Sbjct: 339 LSTKYTETYDLPITCTYINN--AFHLTLKISDLGNSDLPKEFINVTKYGSKGKNKNNSEN 396
Query: 271 ----IHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDM 326
+T++L N R A E Y+ ++ C+ + + +S + ++ + +LD+
Sbjct: 397 MAGRYRFTTIDLLKRNSRINDALAEVYLLSKQCVLDIRIVVIGCLSPIYRASDAIAMLDL 456
Query: 327 IVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHND-FIPNNIFISEAANMV 385
IV+ + + Y RP FT+ LA+ RHP+LE+++++ + N++F+S+ A+
Sbjct: 457 IVS----LTNAALIHDYIRPEFTDT--LALKSARHPLLENLNSETIVSNDVFMSDFAHFQ 510
Query: 386 IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTF 445
I+ GPNMSGKS++L+ + LIVI+A +G YVPA +++I+++D + +R D LE N S+F
Sbjct: 511 IIEGPNMSGKSSFLRMIALIVIMAGLGSYVPAEYASIKLMDGVLSRQTNNDVLEQNLSSF 570
Query: 446 MTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505
EM + ++ + +L+++DE+GR T+ S+GF +A++ E L+ + + IFA+H
Sbjct: 571 AHEMATVSLILTASTSNTLVILDEIGRGTTPSEGFGLAYAISEELIRRRPFVIFATHFRQ 630
Query: 506 LSELATIYPNVKILHFYVVI-RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETA 564
LS P V LH + ++ + F++++ +G HYGL +A+ AGLP V++ A
Sbjct: 631 LSTYLQFKPGVVTLHMSTTVGGSDEIYFQYKVAEGNSVEQHYGLQMAKSAGLPGEVLDEA 690
Query: 565 RSI 567
I
Sbjct: 691 HVI 693
>gi|167758190|ref|ZP_02430317.1| hypothetical protein CLOSCI_00528 [Clostridium scindens ATCC 35704]
gi|167664087|gb|EDS08217.1| DNA mismatch repair protein MutS [Clostridium scindens ATCC 35704]
Length = 876
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 186/583 (31%), Positives = 299/583 (51%), Gaps = 47/583 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+++ RNLE+ E L +K+ SL +L TKT G R LR + QPL D +
Sbjct: 261 MLLDSSTRRNLELCETLRE-----KHKRGSLLWVLDKTKTAMGARCLRKFIEQPLIDKNS 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD +DEL N + ++L + +R++C ++ N +
Sbjct: 316 IERRLDAVDELKQNAISREEIREYLTPV-YDLERLVCKITYQSA----------NPR--- 361
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I K++L LP + +L++ +S LL ++Y + E + + E I ED
Sbjct: 362 ----DLIAFKSSLSMLPHIKYILEEMKSPLLKDLYERLDTLEDLCHL---VEEAIKED-- 412
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A ++ I+ G + +D R + D + + L RE+ + NLK+ +N
Sbjct: 413 ----PPLA-MKEGGIIRDGYNEEVDRLRSAKSDGKDWLAKLETDEREKTGIKNLKIRYNK 467
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY-IRTEIC 299
G+YL + + + +P + + N EL L A + Y + ++
Sbjct: 468 VFGYYLEVTNS-FKHMVPDYYTRKQTLANAERYIIPELKELEDTILGAEDKLYALEYQLY 526
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EA D I ++V + A+ + LD +FA RY RP E G + I G
Sbjct: 527 CEAR-DKIAKEVLRIQTTAKAIAQLD----AFASMALVAEQSRYVRPKINEKGVIDIKDG 581
Query: 360 RHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
RHP++E I ND FI N+ ++++ N + I+TGPNM+GKSTY++Q LIV++AQIG +VP
Sbjct: 582 RHPVVEKMIPNDMFISNDTYLNDKKNRISIITGPNMAGKSTYMRQTALIVLMAQIGSFVP 641
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +VDRIFTR+G D+L S STFM EM E A +++N + +SL+++DE+GR TS+
Sbjct: 642 AASADIGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRGTST 701
Query: 477 SDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
DG +IAW+ EH+ S L A T+FA+H L+EL NV V + + + F
Sbjct: 702 FDGLSIAWAVIEHISSSRLLGAKTLFATHYHELTELEGKIDNVNNYCIAVKEKGDDIIFL 761
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
++ G YG+ +A +AG+P +V AR I + ++
Sbjct: 762 RKIVKGGAD-KSYGIQVARLAGVPESVTSRAREIVEELVHADI 803
>gi|260555570|ref|ZP_05827791.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|260412112|gb|EEX05409.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|452948878|gb|EME54350.1| DNA mismatch repair protein MutS [Acinetobacter baumannii MSP4-16]
Length = 881
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 175/587 (29%), Positives = 305/587 (51%), Gaps = 49/587 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ ++ LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKTKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINC 583
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++I+
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQISV 820
>gi|50250468|emb|CAH03854.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri]
Length = 859
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 180/573 (31%), Positives = 284/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + + +L ++ +T G+RLL L +PL++ E +
Sbjct: 270 LDGASRRNLELDVNL------SGGRDNTLQSVMDRCQTAMGSRLLTRWLNRPLRNREILE 323
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQL L + +R+L + NA+
Sbjct: 324 ARQDSITCLLEHYRFEQLQPQLKDI-----GDLERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L ++D + L + S+ + A + R +ID
Sbjct: 367 -----DLARLRDALAALPQLQAGMQDLVAPHLLELATSISTYPELAELLARA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDPELDELQSLSENAGQYLMDLETREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + ++ L A L LDM+ N ++ RP F E + I+ G
Sbjct: 531 YDELLEMLIGHLAPLQESAAALAELDMLSNLAERALNLD----LNRPRFVEQPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 587 RHPVVEQVLETPFVANDLGLDDATRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ D
Sbjct: 647 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ EHL L+A+T+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAEHLAKLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 798
>gi|421652192|ref|ZP_16092555.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC0162]
gi|425750961|ref|ZP_18868915.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-348]
gi|445457341|ref|ZP_21446486.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC047]
gi|408506465|gb|EKK08173.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC0162]
gi|425484746|gb|EKU51146.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-348]
gi|444776921|gb|ELX00958.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC047]
Length = 881
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 175/587 (29%), Positives = 305/587 (51%), Gaps = 49/587 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + ++ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKALHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINC 583
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++I+
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQISV 820
>gi|153811376|ref|ZP_01964044.1| hypothetical protein RUMOBE_01768 [Ruminococcus obeum ATCC 29174]
gi|149832503|gb|EDM87587.1| DNA mismatch repair protein MutS [Ruminococcus obeum ATCC 29174]
Length = 872
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 178/585 (30%), Positives = 294/585 (50%), Gaps = 51/585 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID++S RNLE++E L K+ SL +L TKT G R LR + QPL D E
Sbjct: 261 MLIDSSSRRNLELVETLRE-----KQKRGSLLWVLDKTKTAMGARTLRGYVEQPLIDAEE 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RL ++EL L + ++L + +R++ ++
Sbjct: 316 INLRLGAVEELTQKPMLRDEIREYLNPI-YDLERLISRISYQSANP-------------- 360
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ ++L+ +P + ++L++ ++ +L I+ + E + KR + DE
Sbjct: 361 ---RDMVAFASSLEMIPYIRQILQEFEAPILKQIFEDMDPLEDVTDLIKRA--ITDE--- 412
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A+ I+ G + +D R S D + + L + +E + LK+ ++
Sbjct: 413 ----PPLAQKDGGI-IREGYNADVDKYRHSRTDGKKWLAELEAREKERTGIKTLKIKYSR 467
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+ L + + + ++P +++ N T EL L A Y
Sbjct: 468 VFGYALEVTNS-FKDQVPDNYVRKQTLTNAERYITQELKDLEDLILGAEDRLYALEYELF 526
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ D + ++V + A+ + LD+ FA + + RP ENG L I GR
Sbjct: 527 ADVRDKVGKEVVRIQKTAKAIAALDV----FASLALVAERNNFVRPKINENGVLDIKNGR 582
Query: 361 HPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E I ND FI N+ ++ V I+TGPNM+GKSTY++Q LIV++AQIG +VPA
Sbjct: 583 HPVVEQMIENDMFIANDTYLDNQKKRVSIITGPNMAGKSTYMRQTALIVLMAQIGSFVPA 642
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I +VDRIFTR+G D+L S STFM EM E A +++N + RSL+++DE+GR TS+
Sbjct: 643 EKANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSRSLLILDEIGRGTSTF 702
Query: 478 DGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG AIAWS EH+ + K A T+FA+H L+EL P V ++ + ++ D F
Sbjct: 703 DGLAIAWSVIEHISNTKLCGAKTLFATHYHELTELEGKIPGVN--NYCIAVKEKGDDIVF 760
Query: 535 Q---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+K G YG+ +A++AG+P +VI A+ + ++ ++
Sbjct: 761 LRKIVKGGADK--SYGIQVAKLAGVPDSVINRAKELVEELSDADI 803
>gi|154249929|ref|YP_001410754.1| DNA mismatch repair protein MutS [Fervidobacterium nodosum Rt17-B1]
gi|189030718|sp|A7HMG4.1|MUTS_FERNB RecName: Full=DNA mismatch repair protein MutS
gi|154153865|gb|ABS61097.1| DNA mismatch repair protein MutS [Fervidobacterium nodosum Rt17-B1]
Length = 823
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 175/594 (29%), Positives = 308/594 (51%), Gaps = 49/594 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+T+V NL +I +K ++L+ +L T T G RLL+ +L PLKD
Sbjct: 262 MTLDSTTVENLSLI---------PGDKGKNLYDVLNKTNTPMGGRLLKWVILHPLKDRNE 312
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL ++ + L + ++L + +R++ L+ D+AK
Sbjct: 313 IEKRLWYVEAFYEDPLLTNEIREYLNGV-YDLERIINR------------LEYDSAKPK- 358
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFL-LANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT L+ + + + L + + LA + + + I+ +I E+
Sbjct: 359 ----DLISLKTTLEVVEPIKEALSTNEKLIQLAQMLPDLSQ------IKVKI-----ENT 403
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
L + IK G+ LD R ++E + + R + + LK+ FN
Sbjct: 404 LLEEFEGELGEGKI--IKEGVSKELDEYRELLYHSNEKLKEFEERERAKTGIQKLKVSFN 461
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
N G+Y+ IP ++ P + ++ N +T EL + +A + I +
Sbjct: 462 NVFGYYIEIPKGQVKFA-PQEYTRIQTLVNAERYTTTELKEFEQKILAAKEKVEILEKTI 520
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ + D ++ L LAE+L +D+ N FA+ + Y++P +++ + G
Sbjct: 521 FKQICDELKGYTQDLRKLAEMLSWIDVYSN-FAYV---SKLYSYSKPEISDS-EFKVLNG 575
Query: 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
RHP++E ++F+PN+I++S+ M I+TGPNMSGKSTY++QV LI ++ QIGC+VPA +
Sbjct: 576 RHPVVERFVDEFVPNDIYMSDELRMYILTGPNMSGKSTYIRQVGLIALMTQIGCFVPAQY 635
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ + V DRIFTRMG D++ + STF+TEM E A ++ +++SL+++DE+GR TS+ DG
Sbjct: 636 AKVPVFDRIFTRMGARDDISTGKSTFLTEMNEVALILSKATQKSLVLLDEVGRGTSTFDG 695
Query: 480 FAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
+IAW+ E++ + +K TIFA+H L+EL+ Y +K L V + + F ++ +
Sbjct: 696 ISIAWAMSEYIYNEIKCKTIFATHFTELTELSEGYSGIKNLTVDVKETPDGVVFLHKVVE 755
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
G YG+ +A +AGLP ++IE A+ I + I +K ++ L+ Q++ +
Sbjct: 756 GVAD-RSYGIEVAAIAGLPESIIERAKEILNIIVEKSDLEKKVGVLKEGQMKKI 808
>gi|227872342|ref|ZP_03990695.1| DNA mismatch repair protein MutS [Oribacterium sinus F0268]
gi|227841806|gb|EEJ52083.1| DNA mismatch repair protein MutS [Oribacterium sinus F0268]
Length = 881
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 181/583 (31%), Positives = 306/583 (52%), Gaps = 48/583 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++ RNLE+ E L K+ SL +L T T G+R+LR L +PL++ +
Sbjct: 268 MLLDLSTQRNLELWETLRD-----KKKRGSLLWVLDKTHTAMGSRMLRHFLERPLRERKK 322
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKS 119
+ RLDC++EL R E R + +++ K+ + NA+
Sbjct: 323 MEERLDCIEELCQ------------RYIDGEELREYLDSIYDMERLIGKISISSANAR-- 368
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ LK++L LP++ + L LL ++ + + + I RI E I+ED
Sbjct: 369 -----DMLALKSSLQFLPVIKRTLSSFSGKLLQDLGQKM---DALEEIYTRIDECIEED- 419
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P ++ ++ IK + + R + E ++ L + RE+ + NLK+ +N
Sbjct: 420 -----PPLS-IKEGGIIKSSFHEEVRLFREAGEHGKEWLNRLEEQEREKSGIKNLKIKYN 473
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+ I K QG++P FI+ +T+EL L + AA E + E
Sbjct: 474 RIFGYCFEI-SKSYQGEIPDYFIRRQTLAQAERYTTVELQDLQNKILGAA-ENLQQLEYS 531
Query: 300 LEA-LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L L + + ++ + A+ + LD ++ + ++Y RP E G L I
Sbjct: 532 LFVNLREELSRELGRMQKTAKEIAFLDACLSLSKVAMQ----EQYVRPKINEKGNLTIVD 587
Query: 359 GRHPILESIHND--FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D F+PN+ + + + I+TGPNM+GKSTY++QV LIV++A IG +VP
Sbjct: 588 GRHPVVEKLLQDQSFVPNDASLGKEEKIAIITGPNMAGKSTYMRQVALIVLMASIGSFVP 647
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I + DRIFTR+G D+L S STFM EM E + +++N +E SL+++DE+GR TS+
Sbjct: 648 AKQADIPICDRIFTRVGASDDLASGQSTFMVEMSEVSNILRNATENSLLILDEIGRGTST 707
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG +IAW+ E+L +KA T+FA+H LS L NVK ++ + + + + +F
Sbjct: 708 FDGLSIAWAVVEYLAREIKAKTLFATHYHELSVLEGKLENVK--NYCIAVSKEQGEIQFL 765
Query: 536 LKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
K P YG+ +A++AG+P+ V++ AR I+S + +K+++
Sbjct: 766 RKIMPGGADESYGIDVAKLAGVPAPVLDRAREISSFLNEKDLR 808
>gi|325095854|gb|EGC49164.1| DNA mismatch repair protein [Ajellomyces capsulatus H88]
Length = 836
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 187/629 (29%), Positives = 328/629 (52%), Gaps = 80/629 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ L + S + LF +L T T G+RLLR+N+LQP +
Sbjct: 203 MLIDLSTIVSLELIQNLQN-----SKSRDCLFGVLNETLTPMGSRLLRSNVLQPSTEQAK 257
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R + ++EL E++F+ + Q L+ F ++D+VL P KVT +A++S
Sbjct: 258 LLARYNAVEELSMKEEIFYSVRQALKSF-VDSDKVLTSLIVMPTKVT-----FQHAEQS- 310
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVIDEDV 179
I+++I+LKT ++A+ + + L AQS LL I + E N + R+G+ D
Sbjct: 311 --INNVIMLKTYVNAIKPIHQALSGAQSTLLLAIRNTYKEANNDVVELASRLGDEYD--- 365
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+D + R+ + S ++ L N LP
Sbjct: 366 ------------------LALDLRFETGRQYYFRLSVSI------------LDNNPLP-- 393
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
FI + K I TL+L LN + + E ++
Sbjct: 394 -------------------DVFINIFKRKTYIEFQTLDLVKLNQKITDSHNEVINMSDRT 434
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ L++ IR ++ L ++E + +LD++V +FAH ++ + Y RP T+ LAI G
Sbjct: 435 IQELIEDIRSQIAGLFRVSESIAMLDVLV-AFAHLVT---IQDYVRPELTDT--LAIKAG 488
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHPI E IH+D ++PN+ + ++ + I+TG NMSGKSTY++ + L+ I+AQIGC+VPA
Sbjct: 489 RHPIREKIHSDKYVPNDAYATQQSRFQIITGCNMSGKSTYIRSLALMTIMAQIGCFVPAQ 548
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ VV ++F R+ T DN+E+N STF EM+E +F+++N+ +S++++DELGR TS++D
Sbjct: 549 YASFPVVHQLFARVSTDDNVEANVSTFSAEMREMSFILRNIEPKSMVIIDELGRGTSTND 608
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI--RNNRLDFKFQL 536
G AIA + E L+ A F +H +L+++ V LH V + +++ +++
Sbjct: 609 GLAIAIAIAEALIESHALVWFTTHFHDLAKIMLERNGVVNLHLAVEMSPSTSKMTMLYKI 668
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK-EVKRMEINCLQY-KQIQMLYH 594
DG HYGL LA++ P ++ A+ ++ ++ K E +R L K+ +++
Sbjct: 669 SDGFVKDKHYGLFLAKLLPFPQPMLHKAQEVSEALSLKIENQRKRSKTLAIAKRRKLILD 728
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKESF 623
++L+ KY + E +R L+ L+ F
Sbjct: 729 LKEQLLQAKYGALNGEPLRIWLKKLQYEF 757
>gi|407070453|ref|ZP_11101291.1| DNA mismatch repair protein MutS [Vibrio cyclitrophicus ZF14]
Length = 853
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 186/571 (32%), Positives = 294/571 (51%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T T G+R+L+ L QP+++I ++
Sbjct: 266 LDAATRRNLEITQNLSG---GTDN---TLAEVLDHTATAMGSRMLKRWLHQPMRNISALD 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E M + LF L L++ + +R+L + + D A+
Sbjct: 320 QRLDAIGE-MKDLALFTELQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A++ LP LA+ L + L + +YAS + E++ E +
Sbjct: 367 ------LRQAMEYLPELAETLTQLKHPYLTQL-------AQYASPLGEVSELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R +E + L + RE + LK+ +NN
Sbjct: 413 NPPVVIRDGSVIA--EGYNTELDEWRDLAAGATEFLDKLEQEERERHGIDTLKVGYNNVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAIEKQL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L +A + LD++ N A T +D Y RP TE+ + I
Sbjct: 527 --WEELFDLLLPYLEQLQNIASSVSQLDVLQN-LAERADT--LD-YCRPTMTESAGVQIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I +++ M+I+TGPNM GKSTY++Q LI ++A IGCYVP
Sbjct: 581 AGRHPVVEQVMDEPFIANPIDLNDQRKMLIITGPNMGGKSTYMRQTALIALMAHIGCYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +TI +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 641 AESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL P + +H V + + F
Sbjct: 701 YDGLSLAWASAEWLANQINAMTLFATHYFELTELPNQLPTLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKAVIKNART 790
>gi|323355177|gb|EGA87004.1| Msh4p [Saccharomyces cerevisiae VL3]
Length = 822
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 179/560 (31%), Positives = 290/560 (51%), Gaps = 43/560 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VR LE++E SL+ L TT T G R LR ++LQPL D +
Sbjct: 265 MLIDSKTVRGLELVEN------KLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGS 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP---KETDRVLC--HFCFKPKKVTSKVLDVDN 115
I RL+ L+EL +N+ L L ++ P K R+LC H KP +
Sbjct: 319 IEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQ---------- 368
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEKYASIRKRIGE 173
I+ ++LLK L ++ L L D QS L++ + + N+ I K I
Sbjct: 369 ------RINYVLLLKETLQSVKSLKDALNDQFFQSRLISET-KKIFNNDAIMEIEKLINS 421
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I+ED + A Q+ +A+K +GLLD++R+ + + E + K+ N
Sbjct: 422 CINEDCVWASSAIQLLNQRSYAVKSDSNGLLDVSRQIYKEVKEEFFREVEDLTAKNKI-N 480
Query: 234 LKLPFNNRQGFYLSIPHK---DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
L +++ +GFYL I + D LP FI N I C+TL + N R K
Sbjct: 481 LDHNYDSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVME 540
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E + +E ++ L+D I +S L ++AE + +LD++ SF + + + YT P FT
Sbjct: 541 EILLLSEETVDELLDKIATHISELFMIAEAVAILDLVC-SFTYNLKE---NNYTIPIFTN 596
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILA 409
N L I RHP+LE + +F+PN I ++ ++++ I+TG NMSGKS YL+QV LI I+A
Sbjct: 597 N--LLIRDSRHPLLEKVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMA 654
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +PA + + V R+ R+ D++E SS F EMKE A+ + +++ +L+++DE
Sbjct: 655 QMGSGIPALYGSFPVFKRLHARVCN-DSMELTSSNFGFEMKEMAYFLDDINTETLLILDE 713
Query: 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-N 528
LGR +S +DGF ++ + EHLL +A ++H +++ ++ + P V LH V+ N N
Sbjct: 714 LGRGSSIADGFCVSLAVTEHLLRTEATVFLSTHFQDIPKIMSKKPAVSHLHMDAVLLNDN 773
Query: 529 RLDFKFQLKDGPRHVPHYGL 548
+ +QL + + G+
Sbjct: 774 SVKMNYQLTQKSVAIENSGI 793
>gi|421808544|ref|ZP_16244391.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC035]
gi|410415692|gb|EKP67477.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC035]
Length = 881
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 300/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V S
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRMVLKEIGDIERVLSRV------ALSSAR 370
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 371 PRDLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|410657244|ref|YP_006909615.1| DNA mismatch repair protein MutS [Dehalobacter sp. DCA]
gi|410660280|ref|YP_006912651.1| DNA mismatch repair protein MutS [Dehalobacter sp. CF]
gi|409019599|gb|AFV01630.1| DNA mismatch repair protein MutS [Dehalobacter sp. DCA]
gi|409022636|gb|AFV04666.1| DNA mismatch repair protein MutS [Dehalobacter sp. CF]
Length = 850
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/602 (31%), Positives = 306/602 (50%), Gaps = 65/602 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLE++E L TS++K +LF L TKT G RLLR + QPL+D E+
Sbjct: 251 MVLDKWTRRNLELVESLR-----TSDEKGTLFSTLNLTKTAFGARLLRNWVQQPLRDPES 305
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RL ++EL N FLR+ +K + V D++
Sbjct: 306 INERLASVEELTRN--------TFLRQ--------------DIQKALTTVYDLERLLGKL 343
Query: 121 TLISS----IILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
+L + ++ L + L LP + + D S LA S+ + A E++
Sbjct: 344 SLGKASPRDLLALGSTLSCLPKVRDCITDNDSQKLAKYLPSLAGLDDLAQ------ELLA 397
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
++ P+ + I+ G +D R E + L N+ RE K+ +LK+
Sbjct: 398 --AINPEAPYSPKDGNI--IQNGYSAEIDSLRAISSGGKEWIARLENQERERTKIRSLKI 453
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
FN G+++ I + + +P + + N T EL R +A + +
Sbjct: 454 GFNKNFGYFIEITNANAH-LIPDDYQRKQTLVNAERFITPELKEYEQRVLTAQDKL---S 509
Query: 297 EICLEALVDAIREDVSVLTLL----AEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
++ + L +R+ V +LL A+ L +D+ V+ I + Y +P +G
Sbjct: 510 DLEYQ-LFSVLRDKVLACSLLIINAAQSLAEIDVFVSLAGTAIQ----NNYVKPEIRSDG 564
Query: 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
+ I GRHP++E I + F+PN+ +++ ++ ++TGPNM+GKSTY++QV LIV++AQIG
Sbjct: 565 IIHIVEGRHPVVERICDTFVPNDTYLTRNKHLALITGPNMAGKSTYMRQVALIVLMAQIG 624
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I + D IFTR+G DNL + STFM EM E A +++N + SLI++DE+GR
Sbjct: 625 SFVPAQKAAISIADCIFTRVGAADNLAAGQSTFMVEMNEVAHILKNATADSLIILDEVGR 684
Query: 473 ATSSSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
T++ DG ++AW+ E+L+ ++KA T+FA+H L+EL YP V LH V +R
Sbjct: 685 GTATFDGLSLAWAIAEYLVENTNIKAKTLFATHYHELTELEERYPEVFNLH--VAVREQG 742
Query: 530 LDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSI-----TSRITKKEVKRMEINC 583
D F K P YGL +A++AGLP +++ A I S +K VK ++ N
Sbjct: 743 DDVVFLHKILPGKADRSYGLHVAKIAGLPPHLLKRAAIILGELENSPTQRKIVKAVDANM 802
Query: 584 LQ 585
LQ
Sbjct: 803 LQ 804
>gi|417551140|ref|ZP_12202218.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-18]
gi|417563595|ref|ZP_12214469.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC143]
gi|395555351|gb|EJG21352.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC143]
gi|400385595|gb|EJP48670.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-18]
Length = 881
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVIQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|343493969|ref|ZP_08732253.1| DNA mismatch repair protein MutS [Vibrio nigripulchritudo ATCC
27043]
gi|342825610|gb|EGU60087.1| DNA mismatch repair protein MutS [Vibrio nigripulchritudo ATCC
27043]
Length = 855
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 181/572 (31%), Positives = 285/572 (49%), Gaps = 55/572 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T T G+R+L+ L QP++ ++T+N
Sbjct: 269 LDAATRRNLEITQNLAG---GTDN---TLAEVLDHTATAMGSRMLKRWLHQPMRQLDTLN 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ + LF L L++ + +R+L + +
Sbjct: 323 QRLDAITEI-KDTALFGDLHPVLKQI-GDIERILARLAIRSARP---------------- 364
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A+ LP L+++L L + ++ + +R +
Sbjct: 365 -RDLARLRHAMQQLPELSEILGQVNHPYLGKLAGFTAPQDELCDLLER--------AIKE 415
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L R+ + LK+ +NN
Sbjct: 416 NPPVVIRDGGVIA--EGYNAELDEWRKLADGATEYLEKLEADERDRHGIDTLKVGYNNVH 473
Query: 243 GFYLSIPHKDIQGKL-PSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRT 296
GFY+ + Q L P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 474 GFYIQVSRG--QSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAIEKQL-- 529
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
E L D + + + LA L LD++ N S Y +P E+ + I
Sbjct: 530 ---WEELFDLLLPHLESMQNLASALSQLDVLQNLAERAESLD----YCKPTLNEDIGVRI 582
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GGRHP++E + ++ FI N I + E M+I+TGPNM GKSTY++Q LI ++A IG YV
Sbjct: 583 QGGRHPVVEQVMDEPFIANPIELGEQRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYV 642
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA +TI +DRIFTR+G D+L S STFM EM ETA ++ N ++RSL++MDE+GR TS
Sbjct: 643 PAESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATDRSLVLMDEIGRGTS 702
Query: 476 SSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG ++AW+ E L + A T+FA+H L+EL P + +H V + + F
Sbjct: 703 TYDGLSLAWASAEWLAKQISAMTLFATHYFELTELPNQIPTLANVHLDAVEHGDTIAFMH 762
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P TVI+ AR+
Sbjct: 763 AVQEGAAS-KSYGLAVAGLAGVPKTVIKNARA 793
>gi|349577913|dbj|GAA23080.1| K7_Msh4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 878
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 182/574 (31%), Positives = 295/574 (51%), Gaps = 43/574 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VR LE++E SL+ L TT T G R LR ++LQPL D +
Sbjct: 265 MLIDSKTVRGLELVEN------KLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGS 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP---KETDRVLC--HFCFKPKKVTSKVLDVDN 115
I RL+ L+EL +N+ L L ++ P K R+LC H KP +
Sbjct: 319 IEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQ---------- 368
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEKYASIRKRIGE 173
I+ ++LLK L ++ L L D QS L++ + + N+ I K I
Sbjct: 369 ------RINYVLLLKETLQSVKSLKDALNDQLIQSRLISET-KKIFNNDAIMEIEKLINS 421
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I+ED + A Q+ A+K +GLLD++R+ + + E A + K+ N
Sbjct: 422 CINEDCVWASSAIQLLNQRSCAVKSDSNGLLDVSRQIYKEVKEEFFREAEDLTAKNKI-N 480
Query: 234 LKLPFNNRQGFYLSIPHK---DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
L +++ +GFYL I + D LP FI N I C+TL + N R K
Sbjct: 481 LDHNYDSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVME 540
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E + +E ++ L+D I +S L ++AE + +LD++ SF + + + YT P FT
Sbjct: 541 EILLLSEETVDELLDKIATHISELFMIAEAVAILDLVC-SFTYNLKE---NNYTIPIFTN 596
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILA 409
N L I RHP+LE + +F+PN I ++ ++++ I+TG NMSGKS YL+QV LI I+A
Sbjct: 597 N--LLIRDSRHPLLEKVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMA 654
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +PA + + V R+ R+ D++E SS F EMKE A+ + +++ +L+++DE
Sbjct: 655 QMGSGIPALYGSFPVFKRLHARVCN-DSMELTSSNFGFEMKEMAYFLDDINTGTLLILDE 713
Query: 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-N 528
LGR +S +DGF ++ + EHLL +A ++H +++ ++ + P V LH V+ N N
Sbjct: 714 LGRGSSIADGFCVSLAVTEHLLRTEATVFLSTHFQDIPKIMSKKPAVSHLHMDAVLLNDN 773
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
+ +QL + + G+ + + P + E
Sbjct: 774 SVKMNYQLTQKSVAIENSGIRVVKKIFNPDIIAE 807
>gi|33519242|gb|AAQ20795.1| MutS homolog 4 variant theta 2 [Mus musculus]
Length = 360
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/351 (40%), Positives = 226/351 (64%), Gaps = 15/351 (4%)
Query: 281 LNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPV 340
+N R + + E Y T + + L+ I E + L L++ + +LDM++ SFAH + +
Sbjct: 1 MNERCQESLREIYHMTYMIVCKLLSEIYEHIHGLYKLSDTVSMLDMLL-SFAHACT---L 56
Query: 341 DRYTRPHFTENGPLAIDGGRHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYL 399
Y RP FT+ LAI G HPILE I + + NN +I+E +N++I+TGPNMSGKSTYL
Sbjct: 57 SDYVRPEFTDT--LAIKQGWHPILEKISAEKPVANNTYITEGSNVLIITGPNMSGKSTYL 114
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+Q+ L I+AQIG YVPA +++ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N
Sbjct: 115 KQIALCQIMAQIGSYVPAEYASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNA 174
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKIL 519
+++SLI++DELGR T++ +G I+++ CEHLLS+KA+T+F +H L L +Y NV+ +
Sbjct: 175 NDKSLILIDELGRGTNTEEGIGISYAVCEHLLSIKAFTLFTTHFLELCHLDALYLNVENM 234
Query: 520 HFYV-----VIRN-NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
HF V RN + + + ++L G +YGL AE + LPS+++ AR IT++IT+
Sbjct: 235 HFEVQHVKNTSRNKDAILYTYKLSRGLTEEKNYGLKAAEASSLPSSIVLDARDITTQITR 294
Query: 574 KEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDE-ESIRHALQNLKESF 623
+ ++ + +Q + +YH A RL+ ++Q E + +R L NLK+ +
Sbjct: 295 QILQNQRSSPEMDRQ-RAVYHLATRLVQAARNSQLEPDRLRTYLSNLKKKY 344
>gi|302871703|ref|YP_003840339.1| DNA mismatch repair protein MutS [Caldicellulosiruptor obsidiansis
OB47]
gi|302574562|gb|ADL42353.1| DNA mismatch repair protein MutS [Caldicellulosiruptor obsidiansis
OB47]
Length = 863
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 192/609 (31%), Positives = 306/609 (50%), Gaps = 81/609 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID + RNLE+ E + +KK SL +L TKT G+RLL+ + +PL D+
Sbjct: 254 LQIDINTKRNLELTESIIQ-----RSKKNSLLGILDQTKTSMGSRLLKKWIERPLIDVIE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD +++L S+ + + + L + + +R+ F +K NAK
Sbjct: 309 INRRLDSVEQLKSSYSILVQIEELLSRM-YDIERLSSKFAYKNV----------NAK--- 354
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK +++ LP L K+L + LL IY + I I I+ED
Sbjct: 355 ----DLLSLKRSIEVLPALKKLLSSFSAQLLKEIYEDF---DTLEDIHSLIDSSINEDA- 406
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + +C IK G + +D R ++ E + K R + NL++ +N
Sbjct: 407 ----PVTLK--ECGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIKNLRIGYNK 460
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE--------- 291
G+Y+ + + +P +I+ N T EL L A +
Sbjct: 461 VFGYYIEVTKSNY-SLVPDRYIRKQTLANAERYVTEELKKLEDEILGADQKLIELEYQLF 519
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFTE 350
C IR I EA ++ I++ S + +L +VLC SFA +D Y RP+
Sbjct: 520 CEIRDRI--EAQIERIQKTASYIAIL-DVLC-------SFARI----AIDNEYVRPNVYL 565
Query: 351 NGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVI 407
+ I GRHP++E + +FIPN+ + + N V I+TGPNM+GKSTY++QV LIVI
Sbjct: 566 GDKIYIKNGRHPVVEKMIGRGNFIPNDTELDQVENRVLIITGPNMAGKSTYMRQVALIVI 625
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+GC+VPA + I +VD+IF+R+G D++ S STFM EM E A +++N + +SLI+
Sbjct: 626 MAQMGCFVPADEAHIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIF 685
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAW+ E++ + A T+FA+H L+EL P VK
Sbjct: 686 DEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEEKIPGVK------- 738
Query: 525 IRNNRLDFKFQLKDGP--RHV------PHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
N R+D K + K+ R + YG+ +A +AG+P V++ A I ++ + ++
Sbjct: 739 --NYRVDVKEEGKNVVFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEEILKQLEEADI 796
Query: 577 KRMEINCLQ 585
R I L+
Sbjct: 797 NRKSIRKLR 805
>gi|169632885|ref|YP_001706621.1| DNA mismatch repair protein MutS [Acinetobacter baumannii SDF]
gi|238688262|sp|B0VUC9.1|MUTS_ACIBS RecName: Full=DNA mismatch repair protein MutS
gi|169151677|emb|CAP00467.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Acinetobacter baumannii]
Length = 881
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|239503730|ref|ZP_04663040.1| DNA mismatch repair protein [Acinetobacter baumannii AB900]
gi|421678917|ref|ZP_16118799.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC111]
gi|410391840|gb|EKP44204.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC111]
Length = 881
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRMVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|442804336|ref|YP_007372485.1| DNA mismatch repair protein MutS [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740186|gb|AGC67875.1| DNA mismatch repair protein MutS [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 870
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 187/594 (31%), Positives = 301/594 (50%), Gaps = 65/594 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID++S RNLE+ E L K+ +L +L T T G RLLR + QPL D++
Sbjct: 266 MIIDSSSRRNLELTETLRD-----RKKRGTLLWVLDRTMTAMGGRLLRKWIEQPLLDVDE 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++EL + L + L+K + +++ SK++ V N
Sbjct: 321 INRRLDAVEELKDKFMIRSELRELLKK------------VYDMERLASKLV-VGNVNAR- 366
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVIDEDV 179
++ LK ++ +P + ++ D ++ L I + N+ Y I K I E
Sbjct: 367 ----DLLALKASMGQIPSILDLMSDLKTELCVGIRDEIDHMNDIYELIDKSIAED----- 417
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V + I+ G +D R++F + + + +L K RE + NLK+ +N
Sbjct: 418 -----PPVT-IKDGGIIRDGYSEDVDTYRKAFTEGKQWIADLEAKERELTGIKNLKVRYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---------VRNKSAAG 290
G+Y+ + ++ ++P +I+ N T EL L V+N
Sbjct: 472 KVFGYYIEVTKANLS-QVPDRYIRKQTLVNGERFITEELKKLEDTILGAEEKVKNLEYEL 530
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
C IR +I E V I+ L L +VLC L + + + Y +P E
Sbjct: 531 FCEIREKIAAE--VHRIQRTADRLAQL-DVLCSLAEVADR----------ENYVKPVVHE 577
Query: 351 NGPLAIDGGRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVI 407
+ I GRHP++E + + F+PN+ ++++ + ++I+TGPNM+GKSTYL+QV LIV+
Sbjct: 578 GSEIDIKDGRHPVVEKVLGSSPFVPNDAYLNDDTDRVIIITGPNMAGKSTYLRQVALIVL 637
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+G +VPA +TI +VDRIFTR+G D+L S STFM EM E A ++ N + RSL+++
Sbjct: 638 MAQMGSFVPASKATIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILNNATPRSLLIL 697
Query: 468 DELGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG AIAWS E++ L T+FA+H L+EL +K V
Sbjct: 698 DEIGRGTSTHDGLAIAWSVIEYINDKSRLGCRTLFATHYHELTELEDKLTGIKNCCIEVK 757
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
R + + F ++ G YG+ +A +AG+P VIE A+ I + + ++ +
Sbjct: 758 KRGDEIIFLRKIIPGGAD-QSYGIEVAGLAGVPELVIERAKHILNELDAADINK 810
>gi|226945906|ref|YP_002800979.1| DNA mismatch repair protein MutS [Azotobacter vinelandii DJ]
gi|259511162|sp|C1DSR1.1|MUTS_AZOVD RecName: Full=DNA mismatch repair protein MutS
gi|226720833|gb|ACO80004.1| DNA mismatch repair protein MutS [Azotobacter vinelandii DJ]
Length = 855
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 178/570 (31%), Positives = 284/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + + +L ++ +T G+RLL L +PL+D +
Sbjct: 266 LDGASRRNLELDVNL------SGGRDNTLQSVIDRCQTAMGSRLLGRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + + F L L++ + +R+L + NA+
Sbjct: 320 ARQDTVACLLQDYR-FESLQPQLKEI-GDVERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L L ++ L + ++ + A + +R +ID
Sbjct: 363 --DLARLRDALAALPQLQTALSPLEAPHLQALAGNIRTYPELAELLRRA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + LPNLK+ +N
Sbjct: 415 --PAVIRDGGV--LKQGYDAELDELLSLSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 471 GYYIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKALYEE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ + RP F E L I GRHP
Sbjct: 530 LLEILIAQLAPLQETATALAELDVLANLAERALNLD----FNRPRFVEEPCLRIRQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLDTPFVANDLELDDNTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAQSCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N SERSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASERSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ EHL L+A+T+FA+H L+ LA P V +H N R+ F + GP
Sbjct: 706 LAWAAAEHLAGLRAWTLFATHYFELTVLAESQPVVANVHLSATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI AR +R+
Sbjct: 766 SQ-SYGLAVAQLAGVPGPVISRAREHLARL 794
>gi|421694268|ref|ZP_16133893.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-692]
gi|424060437|ref|ZP_17797928.1| DNA mismatch repair protein mutS [Acinetobacter baumannii Ab33333]
gi|445492772|ref|ZP_21460618.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AA-014]
gi|404568270|gb|EKA73374.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-692]
gi|404668389|gb|EKB36298.1| DNA mismatch repair protein mutS [Acinetobacter baumannii Ab33333]
gi|444762976|gb|ELW87322.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AA-014]
Length = 881
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|169796507|ref|YP_001714300.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AYE]
gi|184157560|ref|YP_001845899.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ACICU]
gi|213156380|ref|YP_002318800.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB0057]
gi|215483970|ref|YP_002326195.1| DNA mismatch repair protein MutS [Acinetobacter baumannii
AB307-0294]
gi|301347835|ref|ZP_07228576.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB056]
gi|301511666|ref|ZP_07236903.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB058]
gi|301597647|ref|ZP_07242655.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB059]
gi|332855545|ref|ZP_08435931.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6013150]
gi|332870218|ref|ZP_08439113.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6013113]
gi|332874294|ref|ZP_08442213.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6014059]
gi|384131654|ref|YP_005514266.1| mutS [Acinetobacter baumannii 1656-2]
gi|384142646|ref|YP_005525356.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Acinetobacter baumannii MDR-ZJ06]
gi|385236974|ref|YP_005798313.1| DNA mismatch repair protein MutS [Acinetobacter baumannii
TCDC-AB0715]
gi|387124475|ref|YP_006290357.1| DNA mismatch repair protein MutS [Acinetobacter baumannii MDR-TJ]
gi|407932298|ref|YP_006847941.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Acinetobacter baumannii TYTH-1]
gi|416148480|ref|ZP_11602391.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB210]
gi|417568718|ref|ZP_12219581.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC189]
gi|417572857|ref|ZP_12223711.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Canada
BC-5]
gi|417578901|ref|ZP_12229734.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-17]
gi|417869490|ref|ZP_12514475.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH1]
gi|417872944|ref|ZP_12517827.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH2]
gi|417878928|ref|ZP_12523521.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH3]
gi|417881928|ref|ZP_12526237.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH4]
gi|421203727|ref|ZP_15660862.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AC12]
gi|421533818|ref|ZP_15980098.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AC30]
gi|421622154|ref|ZP_16063062.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC074]
gi|421624043|ref|ZP_16064921.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC098]
gi|421629205|ref|ZP_16069945.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC180]
gi|421644124|ref|ZP_16084609.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-235]
gi|421648275|ref|ZP_16088682.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-251]
gi|421657664|ref|ZP_16097914.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-83]
gi|421686952|ref|ZP_16126688.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-143]
gi|421700500|ref|ZP_16140014.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-58]
gi|421703097|ref|ZP_16142564.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ZWS1122]
gi|421706817|ref|ZP_16146220.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ZWS1219]
gi|421790893|ref|ZP_16227083.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-2]
gi|421797767|ref|ZP_16233803.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-21]
gi|421799725|ref|ZP_16235715.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Canada
BC1]
gi|424052903|ref|ZP_17790435.1| DNA mismatch repair protein mutS [Acinetobacter baumannii Ab11111]
gi|424064394|ref|ZP_17801879.1| DNA mismatch repair protein mutS [Acinetobacter baumannii Ab44444]
gi|425755144|ref|ZP_18872966.1| DNA mismatch repair protein MutS [Acinetobacter baumannii
Naval-113]
gi|445464161|ref|ZP_21449544.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC338]
gi|445481102|ref|ZP_21455764.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-78]
gi|226723048|sp|B7GW85.1|MUTS_ACIB3 RecName: Full=DNA mismatch repair protein MutS
gi|226723049|sp|B7IBV9.1|MUTS_ACIB5 RecName: Full=DNA mismatch repair protein MutS
gi|238688089|sp|B0VAU7.1|MUTS_ACIBY RecName: Full=DNA mismatch repair protein MutS
gi|238690992|sp|B2HX50.1|MUTS_ACIBC RecName: Full=DNA mismatch repair protein MutS
gi|169149434|emb|CAM87320.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Acinetobacter baumannii AYE]
gi|183209154|gb|ACC56552.1| Mismatch repair ATPase (MutS family) [Acinetobacter baumannii
ACICU]
gi|213055540|gb|ACJ40442.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB0057]
gi|213985940|gb|ACJ56239.1| DNA mismatch repair protein MutS [Acinetobacter baumannii
AB307-0294]
gi|322507874|gb|ADX03328.1| mutS [Acinetobacter baumannii 1656-2]
gi|323517471|gb|ADX91852.1| DNA mismatch repair protein MutS [Acinetobacter baumannii
TCDC-AB0715]
gi|332727402|gb|EGJ58834.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6013150]
gi|332732385|gb|EGJ63642.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6013113]
gi|332737519|gb|EGJ68427.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6014059]
gi|333365001|gb|EGK47015.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB210]
gi|342230353|gb|EGT95193.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH1]
gi|342230878|gb|EGT95701.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH3]
gi|342232749|gb|EGT97520.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH2]
gi|342238460|gb|EGU02892.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH4]
gi|347593140|gb|AEP05861.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Acinetobacter baumannii MDR-ZJ06]
gi|385878967|gb|AFI96062.1| DNA mismatch repair protein MutS [Acinetobacter baumannii MDR-TJ]
gi|395555013|gb|EJG21015.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC189]
gi|395568039|gb|EJG28713.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-17]
gi|398326771|gb|EJN42914.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AC12]
gi|400208425|gb|EJO39395.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Canada
BC-5]
gi|404566416|gb|EKA71562.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-143]
gi|404570031|gb|EKA75114.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-58]
gi|404670981|gb|EKB38850.1| DNA mismatch repair protein mutS [Acinetobacter baumannii Ab11111]
gi|404673130|gb|EKB40929.1| DNA mismatch repair protein mutS [Acinetobacter baumannii Ab44444]
gi|407192933|gb|EKE64106.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ZWS1122]
gi|407193216|gb|EKE64384.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ZWS1219]
gi|407900879|gb|AFU37710.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Acinetobacter baumannii TYTH-1]
gi|408505935|gb|EKK07651.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-235]
gi|408515636|gb|EKK17219.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-251]
gi|408696411|gb|EKL41950.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC074]
gi|408702555|gb|EKL47965.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC098]
gi|408702919|gb|EKL48326.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC180]
gi|408711650|gb|EKL56851.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-83]
gi|409988271|gb|EKO44444.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AC30]
gi|410395961|gb|EKP48246.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-21]
gi|410404311|gb|EKP56379.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-2]
gi|410409266|gb|EKP61199.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Canada
BC1]
gi|425495186|gb|EKU61375.1| DNA mismatch repair protein MutS [Acinetobacter baumannii
Naval-113]
gi|444770788|gb|ELW94930.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-78]
gi|444780057|gb|ELX04029.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC338]
Length = 881
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|119476596|ref|ZP_01616906.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2143]
gi|119449852|gb|EAW31088.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2143]
Length = 855
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 180/569 (31%), Positives = 291/569 (51%), Gaps = 51/569 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI L T K +L ++ TKT G+RLLR L +PL D +
Sbjct: 265 LDAATRRNLEIDTNL------TGGDKHTLQWVMDKTKTAMGSRLLRRWLNRPLNDAAILV 318
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ N Q F + L+ + +R+L + +++ D+ +S
Sbjct: 319 ERQDAIRSLLHNYQ-FEPFREGLKPV-GDMERILARIALR----SARPRDLSRLAQSLAA 372
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSF--LLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ + L ALDA PL+ + K A + L + R++ +N + R G VI E
Sbjct: 373 LPELQSLCAALDA-PLITTLAKTAGVYTELTDLLGRAITDN---PPVVIRDGSVIAE--- 425
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
G D LD R + + + +L + +E+ + LK+ +N
Sbjct: 426 ------------------GYDAELDELRNISSNAGQFLVDLETREKEQTGINTLKVGYNR 467
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ I K P+ +I+ N T EL + SA R +
Sbjct: 468 VHGYYIEI-SKAQSHNAPANYIRRQTLKNAERFITPELKVFEDKALSAKSRALTREKALY 526
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+AL++ + E ++ L A L LD++ N A ++ + RP F + I+
Sbjct: 527 DALLETLNEQLAELQATASALSELDVLGNLAERAENLNLE------RPEFNTTPLIQIEQ 580
Query: 359 GRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRH ++E + ++ FIPN++ + M+IVTGPNM GKSTY++Q +IV+LA IG YVPA
Sbjct: 581 GRHLVVEQVLDEPFIPNDVAFDDQRRMLIVTGPNMGGKSTYMRQTAVIVLLAHIGSYVPA 640
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+TI +VD+IFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+
Sbjct: 641 KSATINLVDQIFTRIGSSDDLAGGRSTFMVEMTETANILHNATDKSLVLMDEIGRGTSTF 700
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+ +L + +KA+T+FA+H L+ L Y V +H N+ + F +
Sbjct: 701 DGLSLAWASAVYLATRVKAFTLFATHYFELTTLPEDYSQVHNVHLDATEHNDHIVFLHSI 760
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
K+GP YGL +A++AG+P V++ A+
Sbjct: 761 KEGPAS-KSYGLQVAKLAGMPDAVVQAAK 788
>gi|307110855|gb|EFN59090.1| hypothetical protein CHLNCDRAFT_137861 [Chlorella variabilis]
Length = 891
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 141/393 (35%), Positives = 221/393 (56%), Gaps = 29/393 (7%)
Query: 256 KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIRED-VSVL 314
++P F + G +T EL +LN R + A+ +C + TE LE + D + + +L
Sbjct: 484 RVPPGFSVLQHSGRTAQVTTGELNALNARLRDASNDCMVLTEQVLEGVSDKVASAYLPLL 543
Query: 315 TLLAEVLCLLDMIVNSFAHTISTKPVDR-YTRPHFTENGPLAIDGGRHPILESIHN---- 369
L + + LLDM+ F+ S P R Y RP TE GPLA+ RHP+LE +
Sbjct: 544 HRLVDGVALLDMLAG-FSLVASGDPAGRQYVRPVLTEAGPLALVEARHPVLECLEGGGGS 602
Query: 370 ----DFIPNNIFISEAANMVIVTG-----------PNMSGKSTYLQQVCLIVILAQIGCY 414
+ PN+ +++ ++ I+TG PNMSGKSTYL+QV L V++AQ+G +
Sbjct: 603 GGGYPYQPNDTYLALNSSFHIITGELRQRLGGGMGPNMSGKSTYLRQVALCVVMAQVGAF 662
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA F+++ DR+ +R+G D+LE+ SS+FM EM+E A ++ + + RSL+++DELGRAT
Sbjct: 663 VPASFASLAPRDRLLSRVGAGDSLETCSSSFMVEMQEVAHILAHATPRSLVLVDELGRAT 722
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
S++DG A+AW+ E L+S A T+FA+H L++LA +YP HF V +RLDF +
Sbjct: 723 STADGVALAWAVGEQLVSRGAPTLFATHFHQLTDLAVVYPAATAWHFGVDASRHRLDFSW 782
Query: 535 QLK-DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI-NCLQYKQIQML 592
+L+ G HYGLLLA G P V++ A + + + + E +R+ Q+ +
Sbjct: 783 RLRAGGSEEAGHYGLLLARAVGFPPEVLQVAEEVVAALDESEGQRIRAYGTADAAQLAAV 842
Query: 593 YHAAQRLICLKYS-----NQDEESIRHALQNLK 620
Y +L + S +QD ++ L+ LK
Sbjct: 843 YDVVHKLALVAQSFAAGGSQDVRGLQKQLRRLK 875
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 6/244 (2%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+ID + LE+I P+ SL +L TKT G RLLRA+LLQPL+DI T
Sbjct: 169 MHIDQATAAALELIHPIRVGTCSAKLSGMSLLRVLDRTKTKCGARLLRASLLQPLRDIAT 228
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++ R D ++EL +++L F +S L PK+ DR+ +P K + L ++
Sbjct: 229 LSLRYDAVEELGRDDELAFNVSTCLAALPKDLDRMCGSLSLRPAKTQAGTL-----RRIA 283
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I S ILL AL LP LA+ L A+ LL + + C + + +R + V++EDV
Sbjct: 284 AMIQSFILLHEALAVLPPLAEALAAARCELLRAVG-AACGHAAFGELRGELQAVLEEDVR 342
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A+ F+ RTQQCFA+K G+DG LD+AR++FC +E VH LAN RE+ +LP +++ +
Sbjct: 343 SAKSAFLNRTQQCFAVKNGVDGFLDVARQTFCRVTEQVHELANSLREQHRLPGMRVHYTA 402
Query: 241 RQGF 244
++GF
Sbjct: 403 KRGF 406
>gi|421675606|ref|ZP_16115526.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC065]
gi|421693011|ref|ZP_16132658.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-116]
gi|404559064|gb|EKA64336.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-116]
gi|410381868|gb|EKP34429.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC065]
Length = 881
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|254583604|ref|XP_002497370.1| ZYRO0F03938p [Zygosaccharomyces rouxii]
gi|238940263|emb|CAR28437.1| ZYRO0F03938p [Zygosaccharomyces rouxii]
Length = 784
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 192/646 (29%), Positives = 333/646 (51%), Gaps = 54/646 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++R LE++E + S + + T T G R LR N+LQPL D
Sbjct: 170 MLIDPKTIRGLELVEN------NVVKQGLSFWKFMDNTCTKMGQRSLRNNILQPLTDKAN 223
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDN-AKKS 119
I+ RL + EL+ +L GL +RK ++ D++ +K+L VD A KS
Sbjct: 224 IDMRLQTVKELLGQHELLDGLRTQMRKL-QDLDKLF-----------AKLLSVDQTAVKS 271
Query: 120 QTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+ I+ ILLK ++ L ++L +S LL R V +E I + I I+E
Sbjct: 272 EQKINYSILLKDSIAVTKNLRELLSQVALESTLLTEA-RDVFCHESIDQIEQLIHSYINE 330
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDT-SEAVHNLANKYREELKLPN--- 233
D + A P Q+C+A+K G +GLLD++R+ + + E +H + EEL + +
Sbjct: 331 DCVWASSPLELENQRCYAVKCGANGLLDVSRQIYKNVMDEIIHEV-----EELSVTHDLI 385
Query: 234 LKLPFNNRQGFYLSIPHKDI--QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
+++ GF+L + + + LP FI V N I C+TL++ N R K E
Sbjct: 386 FDYNYDSSHGFFLRVKRQLVGSASSLPPIFINRVTKKNYIECNTLKIVKYNARLKEVLSE 445
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
I +E ++ L+ I +++SVL +++E + +LD++ FA + Y P F+
Sbjct: 446 ISIISEQVVDKLLTGIVKNISVLFMVSEAVSILDLMC-CFAFNSRER---NYCIPVFS-- 499
Query: 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
+ + RHP++E++ DFIPNNI + + ++ I+TG NMSGKS YL+QV L+ I+AQ+
Sbjct: 500 NQMILQNSRHPVVETLIKDFIPNNISNTASNSLQIITGCNMSGKSVYLRQVVLLCIMAQM 559
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
GC +PA + ++ +I R+ D++E ++STF EMKE A+ + ++ +L+V+DELG
Sbjct: 560 GCPIPADCAYCKIYTKIHARICN-DSMELSTSTFAFEMKEMAYFLDDIDSSTLLVLDELG 618
Query: 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR-NNRL 530
R +S DGF I+ + EHLL + A ++H +++ + P+V L+ ++ ++ L
Sbjct: 619 RGSSIGDGFCISLAVAEHLLKIGATIFLSTHFQDIPSILKYKPSVVHLNMLTDMKGDSSL 678
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRIT----------KKEVKRME 580
+ ++L P + A T+IE A I R+ + E R
Sbjct: 679 EMHYRLSSDPATAIENPGIKAVQKLFSPTIIEEAYRICERLQISKSRCVGGFQTEEDRQH 738
Query: 581 INCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFIDG 626
N +Q++ ++ + L+ + N+D+ S+ +L++L++ F+D
Sbjct: 739 -NLQMVRQMKKIFSLVE-LLGSQLDNEDQFSL-PSLKSLQDLFVDS 781
>gi|383621870|ref|ZP_09948276.1| DNA mismatch repair protein MutS [Halobiforma lacisalsi AJ5]
gi|448702798|ref|ZP_21700155.1| DNA mismatch repair protein MutS [Halobiforma lacisalsi AJ5]
gi|445776891|gb|EMA27867.1| DNA mismatch repair protein MutS [Halobiforma lacisalsi AJ5]
Length = 964
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 181/585 (30%), Positives = 300/585 (51%), Gaps = 52/585 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA ++R+LE+ EP A+ G + +L +L T + G R LR L +PL + + I
Sbjct: 316 LDAVALRSLELFEP--RAVRG--RDEATLVGVLDETASALGGRKLRDWLRRPLLEPDRIE 371
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++EL S + L + LR + +++ ++ + +
Sbjct: 372 ARLDAVEELKSGVRTREELQELLRD------------VYDLERLIGRI------SRERAN 413
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ L +P + L+DA L ++ ++ + A +R I ED + A
Sbjct: 414 ARDLRSLRDTLAVVPDIRAELEDADCDRLRRLHAAL---DPLADVRGLI-----EDAIVA 465
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + I G DG LD RR+ D + + +L + RE + +LK+ +N+
Sbjct: 466 DPPI--EITEGGIIAEGYDGDLDDLRRTARDGKQWIDDLEERERERTGIDSLKVGYNSVH 523
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + ++ +P + + N+ T EL R G E+ E
Sbjct: 524 GYYIEVTNPNLD-SVPDDYQRRQTLKNSERFVTPELKE---REDEIVGAEERADELEYEL 579
Query: 303 LVDAIR---EDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF-----TENGPL 354
D R ++V + LA+ L LD +V S A T++ + Y RP TE+G L
Sbjct: 580 FRDVRRTVADEVERVQDLADALATLDALV-SLA-TVAAQY--DYCRPETLEHERTEDGGL 635
Query: 355 AID--GGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
ID GGRHP++E F+PN+ ++E + ++TGPNMSGKSTY++QV IV+LAQ+G
Sbjct: 636 EIDIEGGRHPVVERTQESFVPNDAHLTEDRRLAVITGPNMSGKSTYMRQVAQIVLLAQVG 695
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + + VDRIFTR+G D++ STFM EM E A +++ ERSL+++DE+GR
Sbjct: 696 SFVPAKSARLTPVDRIFTRVGASDDIAGGRSTFMVEMDELATILREADERSLVLLDEVGR 755
Query: 473 ATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TS++DG AIA + EHL ++ A T+FA+H L+E+A + + LHF V + +
Sbjct: 756 GTSTADGMAIAQAITEHLHDAVGATTLFATHHHPLTEVADVLEDAFTLHFEVDQEDGEVV 815
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F+ ++ G YG+ +A AG+P +V+E +R + + + V
Sbjct: 816 FRHEVAPGA-ATGSYGVEVATAAGVPESVVERSRELVAEAETEPV 859
>gi|421656807|ref|ZP_16097104.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-72]
gi|408503800|gb|EKK05553.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-72]
Length = 881
Score = 254 bits (650), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 174/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G Y+PA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYIPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|425744810|ref|ZP_18862865.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-323]
gi|425490406|gb|EKU56706.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-323]
Length = 885
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 175/571 (30%), Positives = 299/571 (52%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLINDCQTAMGGRLLSRTLMQPIRDTAILD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + Q L+ F + R++ ++V S+V + +A+
Sbjct: 330 ARLDATE-------------QLLKGFHEAPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A VLK QS LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRHALAPVLKAQQSKLLTQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDDELDELRKIRDHAGQFLIDLEIKERERTGINTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL + S+ R ++
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKGFEDKVLSSESRALAREKL 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E+L+D +R++++ L +++ + +D++ N FAH ++ + RP FT + I
Sbjct: 540 LFESLLDELRQNIAHLQMMSAAIAHIDVLAN-FAHQAR---LNSWARPEFTAETCIKIQA 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++H F PN+ F+ M I+TGPNM GKST+++Q LI +LA G +VPA
Sbjct: 596 GRHPVVEALHKAPFTPNDTFLDPQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 KAAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L +K +FA+H L+EL + I +++V + N L
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS---EAGIDNYHVTAQELNGNLILLH 772
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++ GP H GL +A++AG+P++VI+ A+
Sbjct: 773 KVQHGPASQSH-GLQVAKLAGIPASVIKEAQ 802
>gi|431927975|ref|YP_007241009.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri RCH2]
gi|431826262|gb|AGA87379.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri RCH2]
Length = 859
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 179/573 (31%), Positives = 284/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L ++ +L ++ +T G+RLL L +PL++ E +
Sbjct: 270 LDGASRRNLELDVNL------AGGRENTLQSVMDRCQTAMGSRLLTRWLNRPLRNREILE 323
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQL L + +R+L + NA+
Sbjct: 324 ARQDSITCLLEHYRFEQLQPQLKDI-----GDLERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L ++D + L + S+ + A + R +ID
Sbjct: 367 -----DLARLRDALAALPQLQAGMQDLVAPHLLELATSISTYPELAELLARA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDPELDELQSLSENAGQYLMDLETREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + ++ L A L LD++ N ++ RP F E + I+ G
Sbjct: 531 YDELLEMLIGHLAPLQESAAALAELDVLSNLAERALNLD----LNRPRFVEQPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 587 RHPVVEQVLETPFVANDLGLDDATRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ D
Sbjct: 647 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ EHL L+A+T+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAEHLAKLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 798
>gi|336421688|ref|ZP_08601844.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
5_1_57FAA]
gi|336000159|gb|EGN30312.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
5_1_57FAA]
Length = 882
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 186/586 (31%), Positives = 301/586 (51%), Gaps = 53/586 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+++ RNLE+ E L +K+ SL +L TKT G R LR + QPL D +
Sbjct: 267 MLLDSSTRRNLELCETLRE-----KHKRGSLLWVLDKTKTAMGARCLRKFIEQPLIDKNS 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD +DEL N + ++L + +R++C ++ N +
Sbjct: 322 IERRLDAVDELKQNAISREEIREYLTPV-YDLERLVCKITYQSA----------NPR--- 367
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I K++L LP + +L++ +S LL ++Y + E + + + I ED
Sbjct: 368 ----DLIAFKSSLSMLPHIKYILEEMKSPLLKDLYERLDTLEDLCHL---VEKAIKED-- 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A ++ I+ G + +D R + D + + L RE+ + NLK+ +N
Sbjct: 419 ----PPLA-MKEGGIIRDGYNEEVDRLRSAKSDGKDWLAKLETDEREKTGIKNLKIRYNK 473
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY-IRTEIC 299
G+YL + + + +P + + N EL L A + Y + ++
Sbjct: 474 VFGYYLEVTNS-FKHMVPDYYTRKQTLANAERYIIPELKELEDTILGAEDKLYALEYQLY 532
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EA D I ++V + A+ + LD +FA RY RP E G + I G
Sbjct: 533 CEAR-DKIAKEVLRIQTTAKAIAQLD----AFASMALVAEQSRYVRPKINEKGVIDIKDG 587
Query: 360 RHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
RHP++E I ND FI N+ ++++ N + I+TGPNM+GKSTY++Q LIV++AQIG +VP
Sbjct: 588 RHPVVEKMIPNDMFISNDTYLNDKKNRISIITGPNMAGKSTYMRQTALIVLMAQIGSFVP 647
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +VDRIFTR+G D+L S STFM EM E A +++N + +SL+++DE+GR TS+
Sbjct: 648 AASADIGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRGTST 707
Query: 477 SDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
DG +IAW+ EH+ S L A T+FA+H L+EL NV ++ + ++ D
Sbjct: 708 FDGLSIAWAVIEHISSSRLLGAKTLFATHYHELTELEGKIDNVN--NYCIAVKEKGDDII 765
Query: 534 FQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F +K G YG+ +A +AG+P +V AR I + ++
Sbjct: 766 FLRKIVKGGADK--SYGIQVARLAGVPESVTSRAREIVEELVHADI 809
>gi|421788729|ref|ZP_16225009.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-82]
gi|410401288|gb|EKP53438.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-82]
Length = 881
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 174/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRMVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + ++ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKALHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|445406296|ref|ZP_21431734.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-57]
gi|444781584|gb|ELX05501.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-57]
Length = 881
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 174/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + ++ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKALHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|421664814|ref|ZP_16104950.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC110]
gi|408711985|gb|EKL57177.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC110]
Length = 881
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 302/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF + +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQFVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|417552544|ref|ZP_12203614.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-81]
gi|417560180|ref|ZP_12211059.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC137]
gi|421199246|ref|ZP_15656410.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC109]
gi|421456115|ref|ZP_15905458.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-123]
gi|421633047|ref|ZP_16073690.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-13]
gi|421805159|ref|ZP_16241052.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-A-694]
gi|395522762|gb|EJG10851.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC137]
gi|395565213|gb|EJG26861.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC109]
gi|400211213|gb|EJO42176.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-123]
gi|400392803|gb|EJP59849.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-81]
gi|408707766|gb|EKL53049.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-13]
gi|410409757|gb|EKP61681.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-A-694]
Length = 881
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 174/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + ++ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKALHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|448434380|ref|ZP_21586190.1| DNA mismatch repair protein MutS [Halorubrum tebenquichense DSM
14210]
gi|445685296|gb|ELZ37651.1| DNA mismatch repair protein MutS [Halorubrum tebenquichense DSM
14210]
Length = 935
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 183/593 (30%), Positives = 299/593 (50%), Gaps = 64/593 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+++DAT+ RNLEI E + GT LF + T T G RLLR L +P +D ET
Sbjct: 273 VDVDATTQRNLEITETMRGDADGT------LFDTVDHTVTAAGGRLLREWLTRPRRDRET 326
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD ++ L S ++ R + + +++ S+ + ++
Sbjct: 327 LAARLDAVEALSSA------------ALARDRVREVLGDAYDLERLASRT--TSGSAGAR 372
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+S ++ L LP LA ++ A S A R + + A++R +GE + E
Sbjct: 373 ELLS----VRDTLALLPDLADAIEGTPLADSPAAAVFDR--VDRDGAAALRAELGEALAE 426
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLD--IAR----RSFCDTSEAVHNLANKYREELKL 231
D P A+T +K G D LD I R +S+ D LA + + L
Sbjct: 427 D------PPKAKTGGGL-LKRGYDDELDELIERHESVKSWLD------GLAEREKRRHGL 473
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSA 288
++ + N G+Y+ + K + ++P + ++ N+ T ELA +R + A
Sbjct: 474 SHVTVDRNKTDGYYVQV-GKSVADQVPEHYREIKTLKNSKRFVTDELAEKEREVLRLEEA 532
Query: 289 AGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
GE EAL + + E +L + LD + + H +TRP
Sbjct: 533 RGELEYE---LFEALRERVAERAELLQDAGRAVAELDALASLATHAARRD----WTRPEL 585
Query: 349 TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
TE L ++ GRHP++E DF+PN++ + +IVTGPNMSGKSTY++Q LI +L
Sbjct: 586 TEERRLDVEAGRHPVVEGT-TDFVPNDLRLDPDREFLIVTGPNMSGKSTYMRQAALIQLL 644
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ G +VPA + + +VD I+TR+G +D L STFM EM+E + ++ + +E SL+++D
Sbjct: 645 AQAGSFVPARAAEVGLVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILD 704
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA P V +H V R+
Sbjct: 705 EVGRGTATYDGISIAWAATEYLHNEVRARTLFATHYHELTTLADHLPRVANVHVAVDERD 764
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ F ++DGP YG+ +A++AG+P V+ A + R+ +E K +E
Sbjct: 765 GEVTFLRTVRDGPTDR-SYGVHVADLAGVPDPVVSRADEVLDRL--REEKAIE 814
>gi|448427491|ref|ZP_21583806.1| DNA mismatch repair protein MutS [Halorubrum terrestre JCM 10247]
gi|445678178|gb|ELZ30672.1| DNA mismatch repair protein MutS [Halorubrum terrestre JCM 10247]
Length = 931
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 176/587 (29%), Positives = 296/587 (50%), Gaps = 52/587 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+++DAT+ RNLEI E + G SLF + T T G RLLR L +P +D E
Sbjct: 264 VDVDATTQRNLEITETMRGDADG------SLFDTVDHTVTAAGGRLLREWLTRPRRDREA 317
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD ++ L S ++ R + + +++ ++ + ++
Sbjct: 318 LAARLDAVEALASA------------ALARDRVREVLGDAYDLERLAART--TSGSAGAR 363
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+S ++ L LP LA + A S A + R + E+ A++R+ + E + E
Sbjct: 364 ELLS----VRDTLALLPDLADAIGGTALADSPAAAVLDR--VDRERAAALREELAEALAE 417
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D P A+T +K G DG LD + + LA + + + L ++ +
Sbjct: 418 D------PPKAKTGGGL-LKAGYDGELDELIERHEEVKSWLDGLAEREKRQHGLSHVTVD 470
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYI 294
N G+Y+ + K + ++P + ++ N+ T ELA +R + A GE
Sbjct: 471 RNKTDGYYIQV-GKSVADQVPEHYREIKTLKNSKRFVTDELAEKEREVLRLEEARGELEY 529
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
E L + + E +L + LD + + H +TRP T L
Sbjct: 530 D---LFEELRERVAERAELLQDAGRAVAELDALASLATHAARRD----WTRPELTTERRL 582
Query: 355 AIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
++ GRHP++E DF+PN++ + +IVTGPNMSGKSTY++Q LI +LAQ G +
Sbjct: 583 DVEAGRHPVVEGT-TDFVPNDLRLDAERGFLIVTGPNMSGKSTYMRQAALIQLLAQAGSF 641
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + +VD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE+GR T
Sbjct: 642 VPARAAEVGLVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDEVGRGT 701
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
++ DG +IAW+ E+L + ++A T+FA+H L+ LA P V +H V R+ + F
Sbjct: 702 ATYDGISIAWAATEYLHNEVRARTLFATHYHELTTLADHLPRVANVHVAVDERDGEVTFL 761
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
++DGP + YG+ +A++AG+P V+ A + R+ +E K +E
Sbjct: 762 RTVRDGPTN-RSYGVHVADLAGVPGPVVSRADEVLDRL--REEKAIE 805
>gi|297544629|ref|YP_003676931.1| DNA mismatch repair protein MutS [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842404|gb|ADH60920.1| DNA mismatch repair protein MutS [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 866
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 186/610 (30%), Positives = 328/610 (53%), Gaps = 53/610 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +++NLEI+E + +KK SL +L T T G RLL+ L +PL + E
Sbjct: 266 MGLDSNAIKNLEILESNKN-----KSKKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEH 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RL ++EL ++ + L Q L K + ++++SK+ V + +
Sbjct: 321 IDARLQAVEELFNDYKNRQDLKQLLNK------------IYDLERLSSKI--VYQSINPK 366
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
IS +K +L LP + ++L+ S LL +IY EK+ +++ I E+ID+ +
Sbjct: 367 DFIS----IKLSLQNLPYIKEILQRFSSRLLKDIY------EKFDTLQD-IYELIDKSI- 414
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + ++ IK G + +D R++ + + NL + RE+ + NL++ +N
Sbjct: 415 --KDDPSTQLKEGNIIKDGYNETVDKLRKASVEGKNWIANLEAEEREKTGIKNLRIGYNK 472
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + +I ++P +I+ N T EL + A E I E
Sbjct: 473 VFGYYIEVTKSNIP-QVPEKYIRKQTLANAERYVTPELKEIE-EAILGAEEKLIELEY-- 528
Query: 301 EALVDAIREDVSVLTL----LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
L + IRE + + + A+ + +D+++ SFA T +RYT+P + + I
Sbjct: 529 -QLFNEIREKIELQIVRIQDTAKYIATIDVLI-SFAEVAET---NRYTKPIVDYSDRIVI 583
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E+I ++ F+ N+I I ++I+TGPNM+GKSTY++QV LIV++AQIG +V
Sbjct: 584 KEGRHPVIETISDESFVANDIEIGPENPIMIITGPNMAGKSTYMRQVALIVLMAQIGSFV 643
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ I +VD+IFTR+G D++ + STFM EM E A ++++ + +SLI++DE+GR TS
Sbjct: 644 PASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTS 703
Query: 476 SSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IA + E++ +KA T+FA+H L++L V+ + V R + + F
Sbjct: 704 TYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGVRNYNVSVEEREDDIIFLR 763
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI----NCLQYKQIQ 590
++ G YG+ ++++AGLP +++E A+ I + V + E+ L + QI
Sbjct: 764 KIVPGGAD-KSYGIQVSKLAGLPYSIVERAKEILKSLENDTVIKFELENAAQQLAFTQID 822
Query: 591 MLYHAAQRLI 600
+ A LI
Sbjct: 823 IFSTAKDSLI 832
>gi|292491234|ref|YP_003526673.1| DNA mismatch repair protein MutS [Nitrosococcus halophilus Nc4]
gi|291579829|gb|ADE14286.1| DNA mismatch repair protein MutS [Nitrosococcus halophilus Nc4]
Length = 860
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 179/571 (31%), Positives = 281/571 (49%), Gaps = 55/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++ RNLE+ E L + + +L +L T T G+RLLR L +PL+D +
Sbjct: 270 LDPSTRRNLELEESL------SGHSSHTLIAVLDRTATAMGSRLLRRYLHRPLRDQTLLK 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPK---ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + L+ GLS L+K + + +R+L + +++ D+ ++S
Sbjct: 324 QRQQAIATLLET-----GLSAALQKLLRGIGDIERILSRVALR----SARPRDLVQLRQS 374
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSF--LLANIYRSVCENEKYASIRKRIGEVIDE 177
L+ I LD+ P L + +D F L + R++CEN
Sbjct: 375 LGLLPEIQAPLFPLDS-PQLQLLRQDLGPFPELYQLLQRAICENP--------------- 418
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
P + Q+ I G D LD R + + + L + RE L LK+
Sbjct: 419 -------PVL--IQEGGVIAPGFDSKLDELRHLSDNAGQFLVELEQRERERTGLSTLKVG 469
Query: 238 FNNRQGFYLSIPHKDIQGKLPS-TFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N G+Y+ IP P T Q +K T EL + SA R
Sbjct: 470 YNKIHGYYIEIPRTQAHKAPPDYTRRQTLKGAERY--ITPELKGFEDKVLSARERALARE 527
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ E L++ + + L + A L LD ++N+ A T Y P ++ + I
Sbjct: 528 KALYEELLEQLANPLPALQVCASALAELD-VLNNLAERAETL---EYVAPVLSDQPGIRI 583
Query: 357 DGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
+GGRHP++E ++ F+PN++ + E M+I+TGPNM GKSTY++Q LIV+LA IG +V
Sbjct: 584 EGGRHPVVEQTMEAPFVPNDLTLHEERQMLIITGPNMGGKSTYMRQTALIVLLAHIGSFV 643
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +DR+FTR+G D+L STFM EM ETA ++ N +E SL++MDE+GR TS
Sbjct: 644 PARCAVIGPIDRMFTRIGAADDLAGGRSTFMVEMTETANILHNATEHSLVLMDEIGRGTS 703
Query: 476 SSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG ++AW+ HL ++ + T+FA+H L+ L +P V LH R+ F
Sbjct: 704 TFDGLSLAWAVASHLACTVHSLTLFATHYFELTSLPEHFPGVANLHLTATEHKERIVFLH 763
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+K+GP + YGL +A +AG+P VI A+
Sbjct: 764 AVKEGPANQ-SYGLQVAALAGVPQEVIAQAQ 793
>gi|452748555|ref|ZP_21948333.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri NF13]
gi|452007461|gb|EMD99715.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri NF13]
Length = 859
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 178/573 (31%), Positives = 285/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T G+RLL L +PL++ ET+
Sbjct: 270 LDGASRRNLELDVNL------AGGRDNTLQSVMDRCQTAMGSRLLTRWLNRPLRNRETLE 323
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQL L + +R+L + NA+
Sbjct: 324 ARQDSITCLLEHYRFEQLQPQLKDI-----GDLERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L +++ + L + +S+ + A + R +ID
Sbjct: 367 -----DLARLRDALAALPQLQAGMQELVAPHLLALAKSISTYPELAELLARA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQYLMDLETREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + ++ L A L LD++ N ++ RP F E + I+ G
Sbjct: 531 YDELLEMLIGHLAPLQESAAALAELDVLSNLAERALNLD----LNRPRFVEQPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 587 RHPVVEQVLETPFVANDLGLDDATRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ D
Sbjct: 647 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ EHL L+A+++FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAEHLARLRAFSLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 798
>gi|289578351|ref|YP_003476978.1| DNA mismatch repair protein MutS [Thermoanaerobacter italicus Ab9]
gi|289528064|gb|ADD02416.1| DNA mismatch repair protein MutS [Thermoanaerobacter italicus Ab9]
Length = 866
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 186/610 (30%), Positives = 328/610 (53%), Gaps = 53/610 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +++NLEI+E + +KK SL +L T T G RLL+ L +PL + E
Sbjct: 266 MGLDSNAIKNLEILESNKN-----KSKKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEH 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RL ++EL ++ + L Q L K + ++++SK+ V + +
Sbjct: 321 IDARLQAVEELFNDYKNRQDLKQLLNK------------IYDLERLSSKI--VYQSINPK 366
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
IS +K +L LP + ++L+ S LL +IY EK+ +++ I E+ID+ +
Sbjct: 367 DFIS----IKLSLQNLPYIKEILQRFSSRLLKDIY------EKFDTLQD-IYELIDKSI- 414
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + ++ IK G + +D R++ + + NL + RE+ + NL++ +N
Sbjct: 415 --KDDPSTQLKEGNIIKDGYNETVDKLRKASVEGKNWIANLEAEEREKTGIKNLRIGYNK 472
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + +I ++P +I+ N T EL + A E I E
Sbjct: 473 VFGYYIEVTKSNIP-QVPERYIRKQTLANAERYVTPELKEIE-EAILGAEEKLIELEY-- 528
Query: 301 EALVDAIREDVSVLTL----LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
L + IRE + + + A+ + +D+++ SFA T +RYT+P + + I
Sbjct: 529 -QLFNEIREKIELQIVRIQDTAKYIATIDVLI-SFAEVAET---NRYTKPIVDYSDRIVI 583
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E+I ++ F+ N+I I ++I+TGPNM+GKSTY++QV LIV++AQIG +V
Sbjct: 584 KEGRHPVIETISDESFVANDIEIGPENPIMIITGPNMAGKSTYMRQVALIVLMAQIGSFV 643
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ I +VD+IFTR+G D++ + STFM EM E A ++++ + +SLI++DE+GR TS
Sbjct: 644 PASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTS 703
Query: 476 SSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IA + E++ +KA T+FA+H L++L V+ + V R + + F
Sbjct: 704 TYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGVRNYNVSVEEREDDIIFLR 763
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI----NCLQYKQIQ 590
++ G YG+ ++++AGLP +++E A+ I + V + E+ L + QI
Sbjct: 764 KIVPGGAD-KSYGIQVSKLAGLPYSIVERAKEILKSLENDTVIKFELENATQQLAFTQID 822
Query: 591 MLYHAAQRLI 600
+ A LI
Sbjct: 823 IFSTAKDSLI 832
>gi|386020150|ref|YP_005938174.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri DSM 4166]
gi|189083218|sp|A4VJN9.2|MUTS_PSEU5 RecName: Full=DNA mismatch repair protein MutS
gi|327480122|gb|AEA83432.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri DSM 4166]
Length = 859
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 179/573 (31%), Positives = 284/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L ++ +L ++ +T G+RLL L +PL++ E +
Sbjct: 270 LDGASRRNLELDVNL------AGGRENTLQSVMDRCQTAMGSRLLTRWLNRPLRNREILE 323
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQL L + +R+L + NA+
Sbjct: 324 ARQDSITCLLEHYRFEQLQPQLKDI-----GDLERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L ++D + L + +S+ + A + R +ID
Sbjct: 367 -----DLARLRDALAALPQLQAGMQDLVAPHLLGLAKSIGTYPELADLLARA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQYLMDLETREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + ++ L A L LD++ N ++ RP F E L I+ G
Sbjct: 531 YDELLEMLIGHLAPLQESAAALAELDVLSNLAERALNLD----LNRPRFVEQPCLRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 587 RHPVVEQVLETPFVANDLALDDATRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ D
Sbjct: 647 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+A+T+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAEQLARLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 798
>gi|312127451|ref|YP_003992325.1| DNA mismatch repair protein muts [Caldicellulosiruptor
hydrothermalis 108]
gi|311777470|gb|ADQ06956.1| DNA mismatch repair protein MutS [Caldicellulosiruptor
hydrothermalis 108]
Length = 863
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 194/609 (31%), Positives = 306/609 (50%), Gaps = 81/609 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID + RNLE+ E + +KK SL +L TKT G+RLL+ + +PL D+
Sbjct: 254 LQIDINTKRNLELTESIIQ-----RSKKNSLLGILDQTKTSMGSRLLKKWIERPLIDVIE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++EL SN + + L + + +R+ F +K NAK
Sbjct: 309 INRRLDSVEELKSNYSTLVQVEELLSRM-YDIERLSSKFAYKNV----------NAK--- 354
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK +++ LP L K+L + LL IY + + I + I+ED
Sbjct: 355 ----DLLSLKRSIEVLPALKKLLSSFSAQLLKEIYEGL---DTLEDIYALVDNSINEDA- 406
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK G + +D R ++ E + K R + NL++ +N
Sbjct: 407 ----PVTLK--EGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIKNLRIGYNK 460
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE--------- 291
G+Y+ + + +P +I+ N T EL L A +
Sbjct: 461 VFGYYIEVTKSNY-SLVPDRYIRKQTLANAERYITEELKKLEDEILGADQKLIELEYQLF 519
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFTE 350
C IR I EA ++ I++ S + +L +VLC SFA +D Y RP+
Sbjct: 520 CEIRDRI--EAQIERIQKTASYIAIL-DVLC-------SFARI----AIDNEYVRPNVYL 565
Query: 351 NGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVI 407
+ I GRHP++E + +FIPN+ + +A N V I+TGPNM+GKSTY++QV LIVI
Sbjct: 566 GDRIYIKNGRHPVVEKMIGRGNFIPNDTELDQAENRVLIITGPNMAGKSTYMRQVALIVI 625
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+GC+VPA + I +VD+IF+R+G D++ S STFM EM E A +++N + +SLIV
Sbjct: 626 MAQMGCFVPADEAHIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIVF 685
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAW+ E++ + A T+FA+H L+EL P VK
Sbjct: 686 DEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVK------- 738
Query: 525 IRNNRLDFKFQLKD--GPRHV------PHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
N R+D K + K+ R + YG+ +A +AG+P V++ A I ++ + ++
Sbjct: 739 --NYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEEILKQLEEADI 796
Query: 577 KRMEINCLQ 585
R I L+
Sbjct: 797 NRKNIRKLR 805
>gi|91775187|ref|YP_544943.1| DNA mismatch repair protein MutS [Methylobacillus flagellatus KT]
gi|91775331|ref|YP_545087.1| DNA mismatch repair protein MutS [Methylobacillus flagellatus KT]
gi|123452014|sp|Q1H2P1.1|MUTS_METFK RecName: Full=DNA mismatch repair protein MutS
gi|91709174|gb|ABE49102.1| DNA mismatch repair protein MutS [Methylobacillus flagellatus KT]
gi|91709318|gb|ABE49246.1| DNA mismatch repair protein MutS [Methylobacillus flagellatus KT]
gi|167042436|gb|ABZ07162.1| putative MutS domain V [uncultured marine microorganism
HF4000_ANIW133B20]
Length = 884
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 176/582 (30%), Positives = 293/582 (50%), Gaps = 44/582 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLEI + L G S+ +L+ +L TT T G RLLR+ L PL+
Sbjct: 297 IQLDAATRRNLEIDQTLR----GESSP--TLYSLLNTTVTAMGARLLRSWLHHPLQHQAD 350
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL + L + + GL LR + +R+ K T++ D+
Sbjct: 351 IQARLQAVKVLQAQ---YDGLRPLLRNV-GDIERMAARVALK----TARPRDLSG----- 397
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L+ +L LP L +VL+ S LL ++ + + + A++ I + DE
Sbjct: 398 --------LRDSLQQLPALQRVLRPEDSALLHSLQQQL--DVPQAALDMLIAAIKDEPA- 446
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A ++ I G D LD R + E + + RE + NLK+ +N+
Sbjct: 447 -------AVLREGGVIADGFDAELDELRAIQSNCGEFLLQFEAQERERSGISNLKVEYNS 499
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
GFY+ I + +P+ + + N T EL + + SA R +
Sbjct: 500 VHGFYIEISRAQSE-NVPAEYRRRQTLKNVERYITPELKTFEDKVLSANERALAREKFLF 558
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L+ ++ ++ AE + LD ++ +FA V +Y P F+ L I GR
Sbjct: 559 DELLGNLQPALAAWQRNAEAVAQLD-VLATFAERAD---VLKYVAPQFSSEAGLDIVDGR 614
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HP++E + FI N++ +S ++++TGPNM GKSTY++Q LIV+LA GC+VPA +
Sbjct: 615 HPVVEQLAQPFIANSVSLSPYRQLLLITGPNMGGKSTYMRQTALIVLLAHCGCFVPAKSA 674
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
I +DRIFTR+G D+L STFM EM ETA ++ N +ERSL+++DE+GR TS+ DG
Sbjct: 675 RIGPIDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATERSLVLLDEIGRGTSTFDGL 734
Query: 481 AIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
++AW+ LL ++YT+FA+H L+ ++ + + +H V + + F +++G
Sbjct: 735 SLAWAVARQLLEKNRSYTLFATHYFELTRISEEFKHAANVHLDAVEHGDGIVFLHNVEEG 794
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
P YGL +A++AG+P TV+ A+ ++ + +V + +
Sbjct: 795 PAS-QSYGLQVAQLAGIPRTVVNAAKRKLVQLEQSQVMQQSL 835
>gi|339493486|ref|YP_004713779.1| DNA mismatch repair protein mutS [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338800858|gb|AEJ04690.1| DNA mismatch repair protein mutS [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 859
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 179/573 (31%), Positives = 284/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + + +L ++ +T G+RLL L +PL++ E +
Sbjct: 270 LDGASRRNLELDVNL------SGGRDNTLQSVMDRCQTAMGSRLLTRWLNRPLRNREILE 323
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQL L + +R+L + NA+
Sbjct: 324 ARQDSITCLLEHYRFEQLQPQLKDI-----GDLERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L ++D + L + +S+ + A + R +ID
Sbjct: 367 -----DLARLRDALAALPQLQAGMQDLVAPHLLGLAKSIGTYPELADLLARA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQYLMDLETREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + ++ L A L LD++ N ++ RP F E L I+ G
Sbjct: 531 YDELLEMLIGHLAPLQESAAALAELDVLSNLAERALNLD----LNRPRFVEQPCLRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 587 RHPVVEQVLETPFVANDLALDDATRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ D
Sbjct: 647 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+A+T+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAEQLARLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 798
>gi|146281879|ref|YP_001172032.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri A1501]
gi|145570084|gb|ABP79190.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri A1501]
Length = 891
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 179/573 (31%), Positives = 284/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L ++ +L ++ +T G+RLL L +PL++ E +
Sbjct: 302 LDGASRRNLELDVNL------AGGRENTLQSVMDRCQTAMGSRLLTRWLNRPLRNREILE 355
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQL L + +R+L + NA+
Sbjct: 356 ARQDSITCLLEHYRFEQLQPQLKDI-----GDLERILARIGLR------------NARPR 398
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L ++D + L + +S+ + A + R +ID
Sbjct: 399 -----DLARLRDALAALPQLQAGMQDLVAPHLLGLAKSIGTYPELADLLARA--IIDNP- 450
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 451 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQYLMDLETREKARTGLANLKVGYN 503
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 504 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 562
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + ++ L A L LD++ N ++ RP F E L I+ G
Sbjct: 563 YDELLEMLIGHLAPLQESAAALAELDVLSNLAERALNLD----LNRPRFVEQPCLRIEQG 618
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 619 RHPVVEQVLETPFVANDLALDDATRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 678
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ D
Sbjct: 679 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRGTSTFD 738
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+A+T+FA+H L+ L P V +H N R+ F +
Sbjct: 739 GLSLAWAAAEQLARLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 798
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 799 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 830
>gi|372271419|ref|ZP_09507467.1| DNA mismatch repair protein MutS [Marinobacterium stanieri S30]
Length = 866
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 180/565 (31%), Positives = 285/565 (50%), Gaps = 43/565 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA++ RNLE+ L G SN +L +L T G+RLLR L +PL+D T+
Sbjct: 269 LDASTRRNLELDVNLSG---GRSN---TLASVLDKCGTPMGSRLLRRWLHRPLRDRSTLE 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + LM + +++ L+ + +R+L + +++ D++
Sbjct: 323 ARQDAIRWLMRPD-CSDNIAEQLKPI-GDMERILSRVALR----SARPRDLER------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ AL LP L LK + + ++ + + A + R +ID
Sbjct: 370 ------LRNALATLPELQNSLKATDAARIKSLSQQITTFPTDADLLARA--IIDA----- 416
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G D LD R + E + L + R + LK+ +N
Sbjct: 417 -PPVVIRDGGVIA--AGYDAELDELRGLSENAGEFLLQLEARERARTDISTLKVGYNRVH 473
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + K +P +I+ N T EL + SA + R + +
Sbjct: 474 GYYIEV-SKAQAVDMPVEYIRRQTLKNAERFITPELKEFEDKALSAKSKALAREKHLYDE 532
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + E ++ L A L LD++ N ++ Y RP + L I+GGRHP
Sbjct: 533 LLEQLAEQLAPLQESAAGLSELDVLCNLAERALALD----YQRPQLVDERCLQIEGGRHP 588
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E++ F+ N++ + E +M+++TGPNM GKSTY++Q LI +LA IG YVPA +
Sbjct: 589 VVEAVLDTPFVANDLRLDEQRHMLVITGPNMGGKSTYMRQAALITLLAHIGSYVPARSAN 648
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +VDRIFTRMG+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ DG +
Sbjct: 649 IGIVDRIFTRMGSSDDLAGGRSTFMVEMTETANILHNASDRSLVLMDEVGRGTSTFDGLS 708
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AWSC E L +A+T+FA+H L+ L V +H V N+ + F ++++GP
Sbjct: 709 LAWSCAEFLARETRAFTLFATHYFELTSLPERESGVVNVHLTAVEHNDHIVFMHEVQEGP 768
Query: 541 RHVPHYGLLLAEVAGLPSTVIETAR 565
YGL +A++AG+P VI AR
Sbjct: 769 ASQ-SYGLQVAQLAGIPDKVIRNAR 792
>gi|288932103|ref|YP_003436163.1| DNA mismatch repair protein MutS [Ferroglobus placidus DSM 10642]
gi|288894351|gb|ADC65888.1| DNA mismatch repair protein MutS [Ferroglobus placidus DSM 10642]
Length = 820
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 183/571 (32%), Positives = 301/571 (52%), Gaps = 50/571 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+T+++NLEI L ++ +L ++ T T G+RLL+ L +PL D+
Sbjct: 250 MVLDSTTIKNLEIFRNLVDG-----GRRGTLLDVIDKTVTAMGSRLLKKWLQRPLLDVTE 304
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++EL F+R+ +ET + +++ ++ L++ A
Sbjct: 305 IERRLDAVEELKE--------KSFVRRVLRET----LEDVYDLERIITR-LELGKANPK- 350
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK +L A+ + K D QS L ++ + E+ S+ I + I ED
Sbjct: 351 ----DLVALKNSLKAVGKIKKF--DFQSKKLRDLVYGMNPMEELCSL---IEKAIVEDP- 400
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P A + I+ G D LD R++ + E + L + R+ + NL++ +NN
Sbjct: 401 ----P--ANVKDGGVIREGFDEELDELRKAKKEQEEFIKRLEERERKRTGIDNLRVGYNN 454
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ IP K LP +I+ N + EL + K A E IR I
Sbjct: 455 VFGYYIEIP-KSKAKNLPRYYIRKQTLVNAERFTIPELK--DREEKILAYEERIR--ILE 509
Query: 301 EALVDAIREDV----SVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ + + IR +V + AE + LD++ S A + + YTRP E + I
Sbjct: 510 QEIFERIRREVVRHAEKVKDSAERVAELDVLC-SLAEVAT---LYNYTRPKVNEGFDIII 565
Query: 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP +E+ F+PN++ ++E + ++I+TGPNM+GKSTYL+QV LI ILAQIG +VP
Sbjct: 566 RDGRHPAVETT-TKFVPNDVNLTENSRILIITGPNMAGKSTYLRQVALITILAQIGSFVP 624
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++ + +VD+IFTR+G VD++ STFM EM E ++ N ++RSLI++DE+G++T +
Sbjct: 625 ASYAVVGIVDKIFTRIGLVDDITRGRSTFMVEMLEIGRILNNATKRSLILLDEVGKSTGT 684
Query: 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
+G ++AW+ E+L L A +FA+H LS+L VK HF + N +++F ++
Sbjct: 685 KEGLSLAWAIIEYLHELGAKVLFATHYHELSKLENELAGVKNYHFRLKEENGKVEFDRKI 744
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ G YG+ +AE+A LP V+E A I
Sbjct: 745 RRGFSK-ESYGIKIAEMANLPKRVVERAYEI 774
>gi|226951439|ref|ZP_03821903.1| methyl-directed mismatch repair protein, recognizes exocyclic
adducts of guanosine [Acinetobacter sp. ATCC 27244]
gi|226837806|gb|EEH70189.1| methyl-directed mismatch repair protein, recognizes exocyclic
adducts of guanosine [Acinetobacter sp. ATCC 27244]
Length = 879
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 175/571 (30%), Positives = 299/571 (52%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLINDCQTAMGGRLLSRTLMQPIRDTAILD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + Q L+ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDATE-------------QLLKGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A VLK QS LL + + + + + S+ + + I E
Sbjct: 373 --DLVQLRQACAQIPFLRHALAPVLKTQQSKLLLQLDQELGD---FKSLHEHLMAAIVES 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDDELDELRKIRDHAGQFLIDLEIKERERTGINTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R ++
Sbjct: 481 NRVSGYYIELSRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKL 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E+L+D +R++++ L +++ + +D++ N FAH ++ + RP FT + I
Sbjct: 540 LFESLLDELRQNIAQLQMMSAAIAYIDVLAN-FAHQAR---LNNWARPEFTPETCIKIHA 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E+++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALNKAPFTPNDTFLDPQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 KSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L +K +FA+H L+EL++ I +++V + N L
Sbjct: 716 DGLSLAWACVLDLTKRVKCLCLFATHYFELTELSS---ETGIDNYHVTAQELNGNLILLH 772
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++ GP H GL +A++AG+P+ VI+ A+
Sbjct: 773 KVQQGPASQSH-GLQVAKLAGIPANVIKEAQ 802
>gi|448610427|ref|ZP_21661173.1| DNA mismatch repair protein MutS [Haloferax mucosum ATCC BAA-1512]
gi|445745051|gb|ELZ96521.1| DNA mismatch repair protein MutS [Haloferax mucosum ATCC BAA-1512]
Length = 939
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 175/588 (29%), Positives = 297/588 (50%), Gaps = 72/588 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ + SA G++ LF +L T G R L A L +PL D +
Sbjct: 281 LQLDATAIRSLELFDS-RSARAGST-----LFSVLDETACALGRRRLEAWLRRPLVDRDA 334
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD +D L + L L + +++ ++V + +
Sbjct: 335 IEARLDAVDALCDDALTRADLRDHLSA------------VYDLERLVARV------SRER 376
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P + + L + + LLA+ S+ E + +R +G + D
Sbjct: 377 ANARDLRSLKTTLDRVPDIREALAETDADLLADCRESLPELD---GVRDLVGRALVSDPP 433
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
I G D LD R + E V L + RE + +L++ +N
Sbjct: 434 Q-------EITDGGVIADGFDAELDDLRGTAEAGREWVSKLEAEERERTGIDSLEVGYNQ 486
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE---- 291
G+Y+ + + ++ ++P ++ Q +K+ + L E L +++ A E
Sbjct: 487 VHGYYIEVTNPNLD-RVPDDYVRRQTLKNSERFYTPELKEREDEILRAADRADALEYDLF 545
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPV-DRYTRPHFTE 350
C +R ++ E+ + +A+VL LD++ T++ V + YTRP F
Sbjct: 546 CEVRADVAAES---------ERIQAVADVLADLDVL-----RTLADVAVANDYTRPEFRT 591
Query: 351 NGP----------LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQ 400
GP + ID GRHP++E ++F+PN + A ++ ++TGPNMSGKSTY++
Sbjct: 592 EGPGESDRTSDGGIEIDAGRHPVVERAQDEFVPNPASLP-AGSVTLITGPNMSGKSTYMR 650
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV L+ ILAQ+G +VPA+ + + V+DR+FTR+G D++ STFM EM E ++ N +
Sbjct: 651 QVALVCILAQMGSFVPANAARVPVIDRVFTRIGASDDIAGGQSTFMREMSELTDILHNAT 710
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKIL 519
+ SL+++DE+GR TS++DG AIA + E + + A T+FA+H +L+++A V L
Sbjct: 711 DDSLVLLDEVGRGTSTADGLAIARAATEFIHDEIGATTLFATHYHDLTDVAADRETVFNL 770
Query: 520 HFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
HF R+ + F + DGP YG+ +A +AG+P TV++ ARS+
Sbjct: 771 HFTAAQRDGEVTFLHSVADGPSS-SSYGVEVAHLAGVPGTVVDRARSL 817
>gi|192360641|ref|YP_001982817.1| DNA mismatch repair protein MutS [Cellvibrio japonicus Ueda107]
gi|190686806|gb|ACE84484.1| DNA mismatch repair protein MutS [Cellvibrio japonicus Ueda107]
Length = 875
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 170/576 (29%), Positives = 288/576 (50%), Gaps = 63/576 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L T + +LF +L T G+RLLR L +PL+DI +
Sbjct: 270 LDAATRRNLELDTNL------TGGDEHTLFWVLNRCATSMGSRLLRRWLNRPLRDIALLR 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R + EL N F L + K + +R+L + P+ ++ ++ + +
Sbjct: 324 GRQGAIAELQQN--YAFELVNNILKRVGDMERILGRLALRSARPRDLSRLLMSLATYPEL 381
Query: 120 QTLISS-----IILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
Q+ ++ + LL + P L +L R++ +N + R G V
Sbjct: 382 QSELAQRQAPQLTLLAQQISTFPDLVDLLG-----------RAIIDN---PPVVIRDGGV 427
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
I E G D LD R + + + +L + RE +P L
Sbjct: 428 IAE---------------------GYDAELDELRNISTNAGQYLLDLETRERERTGIPTL 466
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
K+ +N G+Y+ + + K P+ +I+ N T EL + + SA
Sbjct: 467 KVGYNRIHGYYIELTSAQSE-KAPADYIRRQTLKNAERYITPELKAFEDKALSAQSRALA 525
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENG 352
R + E L+D + + + L A + LD++ A +S +RP +E
Sbjct: 526 REKALYEELLDILNQQLVPLQDSAAAVAELDVLATLAERADALS------LSRPELSETP 579
Query: 353 PLAIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
+ I GGRHP++E + + F+PN++ + +M+I+TGPNM GKSTY++Q LI +LA I
Sbjct: 580 GIEIQGGRHPVVEQVTSAPFVPNDLVFNPQRHMLIITGPNMGGKSTYMRQAALIALLAHI 639
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + I +VDRIFTR+G+ D+L STFM EM ETA ++ N + +SL++MDE+G
Sbjct: 640 GSFVPAQSARIGIVDRIFTRIGSSDDLAGGRSTFMVEMTETANILHNATAKSLVLMDEIG 699
Query: 472 RATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS+ DG ++AW+C +HL ++A+T+FA+H ++ L P + +H +++
Sbjct: 700 RGTSTFDGLSLAWACAKHLAEKVRAFTLFATHYFEITSLPETVPGIVNVHLNATEHQDKI 759
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
F ++++GP YGL +A++AG+P+ V+ A++
Sbjct: 760 VFLHKVQEGPAS-KSYGLQVAKLAGIPAEVLREAQT 794
>gi|392420660|ref|YP_006457264.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri CCUG 29243]
gi|390982848|gb|AFM32841.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri CCUG 29243]
Length = 859
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 178/573 (31%), Positives = 284/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L ++ +L ++ +T G+RLL L +PL++ E +
Sbjct: 270 LDGASRRNLELDVNL------AGGRENTLQSVMDRCQTAMGSRLLTRWLNRPLRNREILE 323
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQL L + +R+L + NA+
Sbjct: 324 ARQDSITCLLEHYRFEQLQPQLKDI-----GDLERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L ++D + L + S+ + A + R +ID
Sbjct: 367 -----DLARLRDALAALPQLQAGMQDLVAPHLLELATSISTYPELAELLARA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQYLMDLETREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + D++ L A L LD++ N ++ RP F E + I+ G
Sbjct: 531 YDELLERLIGDLAPLQESAGALAELDVLSNLAERALNLD----LNRPRFVEQPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 587 RHPVVEQVLETPFVANDLGLDDATRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+ SL++MDE+GR TS+ D
Sbjct: 647 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDSSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ EHL L+++T+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAEHLAKLRSFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 798
>gi|312622277|ref|YP_004023890.1| DNA mismatch repair protein muts [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202744|gb|ADQ46071.1| DNA mismatch repair protein MutS [Caldicellulosiruptor
kronotskyensis 2002]
Length = 863
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 193/609 (31%), Positives = 307/609 (50%), Gaps = 81/609 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID + RNLE+ E + ++K SL +L TKT G+RLL+ + +PL D+
Sbjct: 254 LQIDINTKRNLELTESIIQ-----RSRKNSLLGILDQTKTSMGSRLLKKWIERPLIDVIE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD +++L SN + + + L + + +R+ F +K NAK
Sbjct: 309 INRRLDSVEQLKSNYSILVQIEELLSRM-YDIERLSSKFAYKNV----------NAK--- 354
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK +++ LP L K+L + LL IY + + I I I+ED
Sbjct: 355 ----DLLSLKRSIEVLPALKKLLSSFSAQLLKEIYEGL---DTLEDIYALIDSSINEDA- 406
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK G + +D R ++ E + K R + NL++ +N
Sbjct: 407 ----PVTLK--EGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIKNLRIGYNK 460
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE--------- 291
G+Y+ + + +P +I+ N T EL L A +
Sbjct: 461 VFGYYIEVTKSNY-SLVPDRYIRKQTLANAERYITEELKKLEDEILGADQKLIELEYQLF 519
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFTE 350
C IR I EA ++ I++ S + +L +VLC SFA +D Y RP+
Sbjct: 520 CEIRDRI--EAQIERIQKTASNIAIL-DVLC-------SFARI----AIDNEYVRPNVYL 565
Query: 351 NGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVI 407
+ I GRHP++E + +FIPN+ + +A N V I+TGPNM+GKSTY++QV LIVI
Sbjct: 566 GDRIYIKNGRHPVVEKMIGRGNFIPNDTELDQAENRVLIITGPNMAGKSTYMRQVALIVI 625
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+GC+VPA + I VVD+IF+R+G D++ S STFM EM E A +++N + +SLI+
Sbjct: 626 MAQMGCFVPADEAYIGVVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIF 685
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAW+ E++ + A T+FA+H L+EL P VK
Sbjct: 686 DEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVK------- 738
Query: 525 IRNNRLDFKFQLKD--GPRHV------PHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
N R+D K + K+ R + YG+ +A +AG+P V++ A I ++ + ++
Sbjct: 739 --NYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEEILKQLEEADI 796
Query: 577 KRMEINCLQ 585
R I L+
Sbjct: 797 NRKNIRKLR 805
>gi|323496140|ref|ZP_08101200.1| DNA mismatch repair protein MutS [Vibrio sinaloensis DSM 21326]
gi|323318884|gb|EGA71835.1| DNA mismatch repair protein MutS [Vibrio sinaloensis DSM 21326]
Length = 854
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 183/572 (31%), Positives = 291/572 (50%), Gaps = 55/572 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L + T G+R+L+ L QP++DI+T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAQVLDHSATAMGSRMLKRWLHQPMRDIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL LF L L++ + +R+L + + D A+
Sbjct: 320 HRLDAISEL-KEAALFADLHPVLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L++++ L+ + KYA+ + E++ E +
Sbjct: 367 ------LRYAMQQLPELSELMGSLNHSYLSQL-------AKYAAPMDEVCELL-EQAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L RE + +LK+ +NN
Sbjct: 413 NPPVVIRDGGVIA--EGYNAELDEWRKLADGATEYLEKLEQDERERHGIDSLKVGYNNVH 470
Query: 243 GFYLSIPHKDIQGKL-PSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRT 296
GF++ + Q L P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQVSRG--QSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQL-- 526
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
E L D + + + LA + +D++ N S Y RP T+ + I
Sbjct: 527 ---WEELFDLLLPHLEQMQNLASAVSQIDVLQNLAERADSLD----YCRPTLTKEAGIHI 579
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + ++ FI N I ++ A M+I+TGPNM GKSTY++Q LI ++A IG YV
Sbjct: 580 QSGRHPVVEQVMDEPFIANPIELNPARKMLIITGPNMGGKSTYMRQTALIALMAHIGSYV 639
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS
Sbjct: 640 PAEAAQIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSNSLVLMDEIGRGTS 699
Query: 476 SSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG ++AW+ E L L + T+FA+H L+EL P++ +H V + + F
Sbjct: 700 TYDGLSLAWASAEWLAKELGSMTLFATHYFELTELPNQIPHLANVHLDAVEHGDSIAFMH 759
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P +VI+ AR+
Sbjct: 760 AVQEGAAS-KSYGLAVAGLAGVPKSVIKNARA 790
>gi|84390123|ref|ZP_00991385.1| DNA mismatch repair protein [Vibrio splendidus 12B01]
gi|84376777|gb|EAP93652.1| DNA mismatch repair protein [Vibrio splendidus 12B01]
Length = 861
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 185/571 (32%), Positives = 294/571 (51%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T T G+R+L+ L QP+++I ++
Sbjct: 274 LDAATRRNLEITQNLSG---GTDN---TLSEVLDHTATAMGSRMLKRWLHQPMRNISALD 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E M + LF L L++ + +R+L + + D A+
Sbjct: 328 QRLDAIGE-MKDLALFTELQPTLKQI-GDIERILARLALRSARPR------DMAR----- 374
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A++ LP LA+ L + L + +YAS + E++ E +
Sbjct: 375 ------LRQAMEYLPELAETLTQLKHPYLTQL-------AQYASPVDEVSELL-ERAIKE 420
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R +E + L + RE + LK+ +NN
Sbjct: 421 NPPVVIRDGGVIA--EGYNAELDEWRDLAAGATEFLDKLEQEERERHGIDTLKVGYNNVH 478
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E L+ ++K+ A E +
Sbjct: 479 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLSSKSKALAIEKKL--- 534
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L +A + LD++ N A T +D Y RP TE+ + I
Sbjct: 535 --WEELFDLLLPYLERLQNIASSVSQLDVLQN-LAERADT--LD-YCRPTMTESAGVQIQ 588
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I +++ M+I+TGPNM GKSTY++Q LI ++A IGCYVP
Sbjct: 589 AGRHPVVEQVMDEPFIANPIDLNDQRKMLIITGPNMGGKSTYMRQTALIALMAHIGCYVP 648
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +TI +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 649 AESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMDEIGRGTST 708
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL P + +H V + + F
Sbjct: 709 YDGLSLAWASAEWLANQINAMTLFATHYFELTELPNQIPTLANVHLDAVEHGDSIAFMHA 768
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 769 VQEGAAS-KSYGLAVAGLAGVPKAVIKNARA 798
>gi|451972078|ref|ZP_21925290.1| DNA mismatch repair protein MutS [Vibrio alginolyticus E0666]
gi|451931916|gb|EMD79598.1| DNA mismatch repair protein MutS [Vibrio alginolyticus E0666]
Length = 853
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 190/580 (32%), Positives = 288/580 (49%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ IET+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCATPMGSRMLKRWLHQPMRCIETLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ EQ+ F Q K + +R+L + + D A+
Sbjct: 320 NRLDAIGEI--KEQVLFADLQPTLKQIGDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V LA K A I EV D E +
Sbjct: 367 ------LRNAMQQLPELESVTASLTHPYLA----------KLAQYAAPIDEVCDLLERAI 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G + LD R+ +E + L RE + LK+ +NN
Sbjct: 411 KENPPVVIRDGGVIA--EGYNAELDEWRKLADGATEYLEQLERDERERHGIDTLKVGYNN 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 469 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQL- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + ++ L LA L LD++ N S Y RP ++ +
Sbjct: 527 ----WEELFDLLMPNLEKLQNLASALSQLDVLQNLAERADSLD----YCRPTLVKDAGIH 578
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + + FI N I ++ A M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 579 IQAGRHPVVEQVTTEPFIANPIELNPARKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 639 VPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 698
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL PN+ +H V + + F
Sbjct: 699 STYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNQLPNLANVHLDAVEHGDSIAFM 758
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 759 HAVQEGAAS-KSYGLAVAGLAGVPKTVIKNARNKLSQLEQ 797
>gi|344996159|ref|YP_004798502.1| DNA mismatch repair protein mutS [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964378|gb|AEM73525.1| DNA mismatch repair protein mutS [Caldicellulosiruptor
lactoaceticus 6A]
Length = 863
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 193/609 (31%), Positives = 307/609 (50%), Gaps = 81/609 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID + RNLE+ E + +KK SL +L TKT G+RLL+ + +PL D+
Sbjct: 254 LQIDINTKRNLELTESIIQ-----RSKKNSLLGILDRTKTSMGSRLLKKWIERPLIDVIE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD +++L SN + + + L + + +R+ F +K NAK
Sbjct: 309 INRRLDSVEQLKSNYSILVQIEELLSRM-YDIERLSSKFAYKNV----------NAK--- 354
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK +++ LP L K+L + LL IY + + I I I+ED
Sbjct: 355 ----DLLSLKRSIEVLPALKKLLSSFSAQLLKEIYEGL---DTLEDIYALIDSSINEDA- 406
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK G + +D R ++ E + K R + NL++ +N
Sbjct: 407 ----PVTLK--EGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIKNLRIGYNK 460
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE--------- 291
G+Y+ + + +P +I+ N T EL L A +
Sbjct: 461 VFGYYIEVTKSNY-SLVPDRYIRKQTLANAERYITEELKKLEDEILGADQKLIELEYQLF 519
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFTE 350
C IR I EA ++ I++ S + +L +VLC SFA +D Y RP+
Sbjct: 520 CEIRDRI--EAQIERIQKTASYIAIL-DVLC-------SFARI----AIDNEYVRPNVCL 565
Query: 351 NGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVI 407
+ I GRHP++E + +FIPN+ + +A N V I+TGPNM+GKSTY++QV LIVI
Sbjct: 566 GDRIYIKNGRHPVVEKMIGRGNFIPNDTELDQAENRVLIITGPNMAGKSTYMRQVALIVI 625
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+GC+VPA + I +VD+IF+R+G D++ S STFM EM E A +++N + +SLI+
Sbjct: 626 MAQMGCFVPADEAHIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIF 685
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAW+ E++ + A T+FA+H L+EL P VK
Sbjct: 686 DEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVK------- 738
Query: 525 IRNNRLDFKFQLKD--GPRHV------PHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
N R+D K + K+ R + YG+ +A +AG+P V++ A I ++ + ++
Sbjct: 739 --NYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAGEILKQLEEADI 796
Query: 577 KRMEINCLQ 585
R I L+
Sbjct: 797 NRKNIRKLR 805
>gi|294650961|ref|ZP_06728302.1| DNA mismatch repair protein MutS [Acinetobacter haemolyticus ATCC
19194]
gi|292823142|gb|EFF82004.1| DNA mismatch repair protein MutS [Acinetobacter haemolyticus ATCC
19194]
Length = 879
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 176/586 (30%), Positives = 305/586 (52%), Gaps = 53/586 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLINDCQTAMGGRLLSRTLMQPIRDTAILD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + Q L+ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDATE-------------QLLKGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A VLK QS LL + + + + + S+ + + I E
Sbjct: 373 --DLVQLRQACAQIPFLRHALAPVLKTQQSKLLLQLDQELGD---FKSLHEHLMAAIVES 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDDELDELRKIRDHAGQFLIDLEIKERERTGINTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R ++
Sbjct: 481 NRVSGYYIELSRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKL 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E+L+D +R++++ L +++ + +D++ N FAH + + RP FT + I
Sbjct: 540 LFESLLDELRQNIAQLQMMSAAIAYIDVLAN-FAHQAR---FNNWARPEFTPETCIKIHA 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E+++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALNKAPFTPNDTFLDPQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 KSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L +K +FA+H L+EL++ I +++V + N L
Sbjct: 716 DGLSLAWACVLDLTKRVKCLCLFATHYFELTELSS---ETGIDNYHVTAQELNGNLILLH 772
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+++ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 773 KVQQGPASQSH-GLQVAKLAGIPANVIKEAQKRLKILEKQQHQHLQ 817
>gi|172087668|ref|YP_203917.2| DNA mismatch repair protein MutS [Vibrio fischeri ES114]
gi|110826510|sp|Q5E7G7.2|MUTS_VIBF1 RecName: Full=DNA mismatch repair protein MutS
gi|171902263|gb|AAW85029.2| methyl-directed mismatch repair protein [Vibrio fischeri ES114]
Length = 854
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 189/628 (30%), Positives = 311/628 (49%), Gaps = 59/628 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L +L +L T T G+RLL+ L QP++ + +N
Sbjct: 268 LDAATRRNLEITQNLAGGF------NHTLAEILDHTSTAMGSRLLKRWLHQPVRTHDVLN 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL + LF ++ L+ + +R+L + +
Sbjct: 322 QRLDAIGELKES-GLFADMAPQLKNI-GDVERILARLALRSARP---------------- 363
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL LP L++ ++ Q L + S + SI + + I E+
Sbjct: 364 -RDLARLRNALQQLPELSQTTQEFQQDHLLTLAASA---QPIDSICELLERAIKENP--- 416
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R ++ + L + RE + LK+ +NN
Sbjct: 417 --PVVIRDGGVLA--DGYNEELDQWRDLANGATQYLEKLEQEERERHDIDTLKVGYNNVH 472
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ I K K P+ ++ Q +K+ L E LN ++K+ A E +
Sbjct: 473 GFYIQI-SKGQSHKAPAHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAIEKRL--- 528
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L +A + LD++ N A T++ Y RP T+ +
Sbjct: 529 --WEELFDQLLPHLEQLQSMANAISELDVLSNLAERADTLN------YCRPVLTKETGIN 580
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+GGRHP++E + +D FI N I ++ M+I+TGPNM GKSTY++Q LI ++A +GCY
Sbjct: 581 IEGGRHPVVEQVMSDPFIANPIKLNPDRKMLIITGPNMGGKSTYMRQTALIALMAHVGCY 640
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 641 VPADSAEIGTLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKHSLVLMDEIGRGT 700
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL ++ + +H V + + F
Sbjct: 701 STYDGLSLAWASAEWLATKINAMTLFATHYFELTELPNLFTGLANVHLDAVEHGDEIAFM 760
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE--VKRMEINCLQYKQIQM 591
+++G + YGL +A +AG+P +VI+ A+ + + V + Q+ +
Sbjct: 761 HAVQEGAAN-KSYGLAVASLAGVPKSVIKKAKQKLQHLESGQVPVPATSTTVKEEHQLSL 819
Query: 592 LYHAAQRLICLKYSNQDEESIRHALQNL 619
+ ++ L + N D+ + R AL+ L
Sbjct: 820 IPEISEVEEALAHVNPDDLTPRQALEEL 847
>gi|291294833|ref|YP_003506231.1| DNA mismatch repair protein MutS [Meiothermus ruber DSM 1279]
gi|290469792|gb|ADD27211.1| DNA mismatch repair protein MutS [Meiothermus ruber DSM 1279]
Length = 853
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 176/571 (30%), Positives = 288/571 (50%), Gaps = 47/571 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M + ++R LEI EP + G +++R+L +L T+T G RLLRA L PL +
Sbjct: 267 MQLSEATLRTLEIFEP---SFVGDRSEERTLLGVLGLTRTAPGRRLLRAWLRHPLVEEAP 323
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD ++ L+ + L + R + + +++ +++L + +
Sbjct: 324 LQARLDAVEALVKDGVL------------RAEVRKVLYRMHDLERLAARLLAGRASPRD- 370
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCEN-EKYASIRKRIGEVIDEDV 179
+ L+ +L LP LA +L S+ E + ++ ++I + ED
Sbjct: 371 -----LAALQRSLALLPELAGLLAGVGPLF------SLSERLPQPVAVAEQIAAALVED- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + T I+ G D LD R+ + + L + RE+ +PNLK+ +N
Sbjct: 419 -----PPLKITDGGL-IREGFDPELDELRQRAEEGRAWIARLEGEAREKTGIPNLKVGYN 472
Query: 240 NRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
G+YL + PH + +P + + + + ST EL + A E R
Sbjct: 473 AVFGYYLEVTRPHYAL---VPKDWRALQTLKDRMRFSTPELKEQERKILQAETEAIKREY 529
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
L + + + + A+VL LD+ + Y+RP F+ +G L I
Sbjct: 530 AVFLELREQVAQAADEVRQAAQVLAELDVYAALAEAAVEYG----YSRPRFSRDGTLQIV 585
Query: 358 GGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E + FIPN++ +S AA ++I+TGPNM+GKSTYL+Q LI +LAQ+G +VPA
Sbjct: 586 AGRHPVVER-SSPFIPNDLSMSPAARLLILTGPNMAGKSTYLRQTALIALLAQVGSFVPA 644
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+T+ + DRI+TR+G D++ STFM EM E A ++Q + +SL+++DE+GR TS+
Sbjct: 645 ESATLPLFDRIYTRIGASDDIAGGRSTFMVEMDELAGILQGATSKSLVLLDEIGRGTSTY 704
Query: 478 DGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG A+AW+ CE+L ++AYT+FA+H L+ L + H L F Q+
Sbjct: 705 DGLALAWAACEYLHDQVRAYTLFATHYFELTALPLRMAAARNAHVAAKEEAGGLVFYHQV 764
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
GP YGL +A +AGLP V++ ARS+
Sbjct: 765 LPGPASQ-SYGLEVARLAGLPQAVLQRARSV 794
>gi|150020893|ref|YP_001306247.1| DNA mismatch repair protein MutS [Thermosipho melanesiensis BI429]
gi|189083203|sp|A6LLR1.1|MUTS_THEM4 RecName: Full=DNA mismatch repair protein MutS
gi|149793414|gb|ABR30862.1| DNA mismatch repair protein MutS [Thermosipho melanesiensis BI429]
Length = 819
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 181/590 (30%), Positives = 297/590 (50%), Gaps = 47/590 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +V NL +I K ++LF +L TKT G RLL+ +LQPLK+ +
Sbjct: 253 MILDSKTVENLSLI---------PGEKGKNLFDILNKTKTSMGARLLKKWILQPLKEKKE 303
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R ++ ++ L + ++L + +R+L + KV+ K D+ + K+S
Sbjct: 304 ILERQKLVEAFYNDHLLLNEVREYLSGV-YDLERILTRLGYG--KVSPK--DLVSLKRSL 358
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L+ SI DAL ++ AQS N + E Y G D +V
Sbjct: 359 YLVPSI------KDALRTNENLVSFAQSLNEFNEVVGILEKALYDEPSNAPG---DGNV- 408
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
IKGG LD R + E + RE+ + L++ FN
Sbjct: 409 ---------------IKGGYSVELDDYRNLLFHSEEKLKEFQESEREKTGIQKLRVGFNQ 453
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ +P ++ +P +I+ N+ T EL + SA + + +
Sbjct: 454 VFGYYIEVPKGQVKN-VPDYYIRKQTLVNSERYITQELKEFEEKIMSAREKVELIEKSLF 512
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L + E + L LA+ L LD I N + YT+P FT G + R
Sbjct: 513 EELKQKLSEYIDGLRNLAQKLSELDAISN----LAMVARLYGYTKPKFT-GGEFYVKNAR 567
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
H ++E +DF+ N+I++ + M IVTGPNMSGKSTY++QV LI ++AQIG +VPA +
Sbjct: 568 HAVVERYVSDFVANDIYMDDRRRMYIVTGPNMSGKSTYIRQVGLIAVMAQIGSFVPADDA 627
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
I + DR+FTRMG D++ + STF+ EM E A +++ +++SL+++DE+GR TS+ DG
Sbjct: 628 EIPIFDRVFTRMGARDDISTGKSTFLIEMSEVALILEKATKKSLVLLDEVGRGTSTFDGI 687
Query: 481 AIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
+IAW+ E++ + + T+FA+H L+EL+ +Y +K L V NN + F ++ +G
Sbjct: 688 SIAWAMSEYIYNEIGCETMFATHFTELTELSDVYEGIKNLTIEVRETNNGVVFLHKVVEG 747
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQI 589
YG+ +A++AG+P V+E A+ I I++K ++ L+ Q+
Sbjct: 748 IAD-RSYGIEVAQIAGVPDGVVERAKEILDIISQKSELEKKVRVLKEGQL 796
>gi|383787109|ref|YP_005471678.1| DNA mismatch repair protein MutS [Fervidobacterium pennivorans DSM
9078]
gi|383109956|gb|AFG35559.1| DNA mismatch repair protein MutS [Fervidobacterium pennivorans DSM
9078]
Length = 829
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 172/593 (29%), Positives = 301/593 (50%), Gaps = 47/593 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D++++ NL +I + ++LF +L TKT G RLL+ +L PLKD +
Sbjct: 268 MVLDSSTIENLSLI---------PGERGKNLFDVLNKTKTPMGARLLKWIILHPLKDRKA 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D + + L + ++L + +R++ + ++ K +
Sbjct: 319 IEKRHDMVSAFFEDTLLTNEIREYLDGV-YDLERIINRLQY-------------DSAKPK 364
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LIS LK L+ + L + L+ + N+ V E + ++++I +++++
Sbjct: 365 DLIS----LKNTLEVIEPLREALESNE-----NLISLVEELPDLSVVKEKIQNTLNDEI- 414
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I+ G+ LD R ++E + R + LK+ FNN
Sbjct: 415 ------EGDLGEGKIIREGVSKELDEYRELLYHSNEKLKEFEETERIRTGIQKLKVGFNN 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ IP + P + ++ N + +L + +A ++
Sbjct: 469 VFGYYIEIPKGQTKNA-PEDYTRLQTLVNAERYTNPKLKEFEQKILAAKERVEELEKLIF 527
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
L D ++ L +E L +D I SFA+ + Y RP + NG I GR
Sbjct: 528 ANLCDELKTYTEALRKTSETLAWID-IYTSFAYIAR---LYGYIRPVLS-NGEFEILQGR 582
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HP++E N+F+PN+ ++ E M I+TGPNMSGKSTY++Q+ LI +++QIG +VPA+F+
Sbjct: 583 HPVVERFVNEFVPNDTYMDENLRMYILTGPNMSGKSTYIRQIGLIALMSQIGSFVPANFA 642
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
I V DRIFTRMG D++ + STF+TEM E A ++ +E SL+++DE+GR TS+ DG
Sbjct: 643 KIPVFDRIFTRMGARDDISTGKSTFLTEMSEVALILNKATENSLVLLDEVGRGTSTFDGI 702
Query: 481 AIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
+IAW+ E++ + +K T+FA+H L+ELA +YP +K L V + + F ++ +G
Sbjct: 703 SIAWAISEYIYNEVKCKTVFATHFTELTELADMYPGIKNLTIEVRETPDGVIFLHKVVEG 762
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
YG+ +A +AGLP +++E A+ I + I +K ++ L+ Q++ +
Sbjct: 763 VAD-RSYGIEVAAIAGLPQSIVERAKEILNIIVEKSDIEKKVGILKEGQMKKI 814
>gi|403675319|ref|ZP_10937498.1| DNA mismatch repair protein MutS [Acinetobacter sp. NCTC 10304]
Length = 881
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 174/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRILMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRMVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + ++ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKALHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|295662539|ref|XP_002791823.1| MutS [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279475|gb|EEH35041.1| MutS [Paracoccidioides sp. 'lutzii' Pb01]
Length = 815
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 176/629 (27%), Positives = 317/629 (50%), Gaps = 99/629 (15%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ + S + LF +L T T G+RLLR+N+LQP +
Sbjct: 200 MLIDLSTIVSLELIQNRQN-----SKSRDCLFGVLNETFTPMGSRLLRSNVLQPSTEPAK 254
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R ++EL + E++F+ + Q
Sbjct: 255 ILARYHAVEELSTKEEMFYSVRQ------------------------------------- 277
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LKT +D+ +L S+C ++YA+I I ++EDV
Sbjct: 278 -------ALKTFVDSDKVLT----------------SLCGPQEYAAIADMINSTLNEDVT 314
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P R Q+ +A+K GI+ LLD+AR+++ + + V LA++ ++ L L L F
Sbjct: 315 YRSRPLDLRNQRTYAVKAGINSLLDVARQTYQEANNDVVELASRLGDKYDLA-LDLRFET 373
Query: 241 RQGFYLSIPHKDIQ-GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ +YL +P + +LP FI + + I TL+L LN + A E ++
Sbjct: 374 GRHYYLRLPVSCLDNNELPDVFINIFRKKTYIEFQTLDLVKLNQKITDAHNEVINMSDRS 433
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ L++ IR +++ L Y +P T+ LAI G
Sbjct: 434 IQELIEDIRSEIAGL-------------------------FRDYVQPELTDT--LAIKAG 466
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
+HPI E I+ D ++PN+ + ++ + I+TG NMSGKSTY++ + L+ ++AQIGC+VPA
Sbjct: 467 KHPIRERINADKYVPNDAYATQQSRFQIITGCNMSGKSTYIRSLALMTVMAQIGCFVPAQ 526
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ VV ++F R+ T DN+E+N STF EM+E +F+++N+ +S++++DELGR TS++D
Sbjct: 527 YASFPVVRQLFARVSTDDNVEANVSTFSAEMREMSFILRNIEPKSMVIIDELGRGTSTAD 586
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI--RNNRLDFKFQL 536
G AIA + E L+ A F +H +LS++ V LH V + +++ +++
Sbjct: 587 GLAIAIAIAEALVESHALVWFTTHFHDLSKIMADRNGVVNLHLAVEMSPSTSKMTMLYKI 646
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK-EVKRMEINCLQY-KQIQMLYH 594
DG HYGL LA + P ++++ A+ ++ ++ K E +R L K+ +++
Sbjct: 647 ADGFVKDKHYGLFLARLLPFPQSLLDKAQEVSKALSLKIENQRKRSKTLAIAKRRKLILD 706
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKESF 623
++L+ K + ++++ L+ L++ F
Sbjct: 707 LKEQLLQAKEGVLEGKALQAWLKKLQQEF 735
>gi|254230501|ref|ZP_04923874.1| DNA mismatch repair protein MutS [Vibrio sp. Ex25]
gi|262393290|ref|YP_003285144.1| DNA mismatch repair protein MutS [Vibrio sp. Ex25]
gi|151936973|gb|EDN55858.1| DNA mismatch repair protein MutS [Vibrio sp. Ex25]
gi|262336884|gb|ACY50679.1| DNA mismatch repair protein MutS [Vibrio sp. Ex25]
Length = 853
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 190/580 (32%), Positives = 287/580 (49%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ IET+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCATPMGSRMLKRWLHQPMRCIETLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ EQ F Q K + +R+L + + D A+
Sbjct: 320 NRLDAIGEI--KEQALFADLQPTLKQIGDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V LA K A I EV D E +
Sbjct: 367 ------LRNAMQQLPELESVTASLTHPYLA----------KLAQYAAPIDEVCDLLERAI 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G + LD R+ +E + L RE + LK+ +NN
Sbjct: 411 KENPPVVIRDGGVIA--EGYNAELDEWRKLADGATEYLEQLERDERERHGIDTLKVGYNN 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 469 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQL- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + ++ L LA L LD++ N S Y RP ++ +
Sbjct: 527 ----WEELFDLLMPNLEKLQNLASALSQLDVLQNLAERADSLD----YCRPTLVKDAGIH 578
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + + FI N I ++ A M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 579 IQAGRHPVVEQVTTEPFIANPIELNPARKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 639 VPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 698
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL PN+ +H V + + F
Sbjct: 699 STYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNQLPNLANVHLDAVEHGDSIAFM 758
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 759 HAVQEGAAS-KSYGLAVAGLAGVPKTVIKNARNKLSQLEQ 797
>gi|386286541|ref|ZP_10063729.1| DNA mismatch repair protein MutS [gamma proteobacterium BDW918]
gi|385280338|gb|EIF44262.1| DNA mismatch repair protein MutS [gamma proteobacterium BDW918]
Length = 860
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 179/582 (30%), Positives = 298/582 (51%), Gaps = 43/582 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L GT N S+F +T G+RLLR L +PL++ ++
Sbjct: 272 MDAATRRNLELDLNLSG---GTENTLASVFDRCQTAM---GSRLLRRWLHRPLRNQAILS 325
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ N Q F L L++ + +R+L + +++ D+ ++S
Sbjct: 326 ARQSGVVGLIDNYQ-FETLRATLKQI-GDLERILSRVGLR----SARPRDLSRLQRS--- 376
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L LP L LK L ++ + + E + S+ + + E+
Sbjct: 377 ----------LATLPELQSQLKPFDIPYLKDLAQQISE---FPSLADLLSRAVAENP--- 420
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G D LD R D E + + + RE+ L LK+ +N
Sbjct: 421 --PMVLRDGGVIA--EGFDPELDELRSLSTDAGEFLLAMERREREKTGLSTLKVGYNRVH 476
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I + P +I+ N T EL + + S+ R + E+
Sbjct: 477 GYYIEISKLQAH-QAPVEYIRRQTLKNAERFITPELKTFEDKALSSKSRALAREKFLYES 535
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L+DA+ E+++ L A+ LC LD+I N I +P F++ L I+ GRHP
Sbjct: 536 LLDALNEELAALQTSAQGLCELDVIANLAERAIQLD----LCQPEFSDKPILDIEQGRHP 591
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++ES+ ++ FI N++ +++ +I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 592 VVESVLDEPFIANDLKLADDRRTLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAKSVK 651
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VD+IFTR+G+ D+L STFM EM ETA ++ N + +SLI+MDE+GR TS+ DG +
Sbjct: 652 LSLVDQIFTRIGSSDDLAGGRSTFMVEMTETANILHNATAKSLILMDEIGRGTSTFDGLS 711
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+C L + +T+FA+H L+ L YP +H V N+ + F ++++GP
Sbjct: 712 LAWACAIDLADRVHGFTLFATHYFELTVLPESYPKAANVHLGVTEHNDHIVFLHRVEEGP 771
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN 582
+ YGL +A++AG+P+ V+ A+ ++ + +K ++N
Sbjct: 772 ANR-SYGLQVAKLAGIPAKVVSAAKIKLQQLESQAIKHGQLN 812
>gi|91227833|ref|ZP_01262006.1| DNA mismatch repair protein [Vibrio alginolyticus 12G01]
gi|91188343|gb|EAS74639.1| DNA mismatch repair protein [Vibrio alginolyticus 12G01]
Length = 853
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 190/580 (32%), Positives = 290/580 (50%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ IET+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCATPMGSRMLKRWLHQPMRCIETLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ EQ F Q K + +R+L + + D A+
Sbjct: 320 NRLDAIGEI--KEQALFADLQPTLKQIGDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V L + KYA+ I EV D E +
Sbjct: 367 ------LRNAMQQLPELESVTASLTHPYLTKL-------AKYAA---PIDEVCDLLERAI 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G + LD R+ +E + L RE + LK+ +NN
Sbjct: 411 KENPPVVIRDGGVIA--EGYNAELDEWRKLADGATEYLEQLERDERERHGIDTLKVGYNN 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 469 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQL- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + ++ L LA L LD++ N S Y RP ++ +
Sbjct: 527 ----WEELFDLLMPNLEKLQNLASALSQLDVLQNLAERADSLD----YCRPTLVKDAGIH 578
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + + FI N I ++ A M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 579 IQAGRHPVVEQVTTEPFIANPIELNPARKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 639 VPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 698
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 699 STYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPSQLPNLANVHLDAVEHGDSIAFM 758
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 759 HAVQEGAAS-KSYGLAVAGLAGVPKTVIKNARNKLSQLEQ 797
>gi|445434048|ref|ZP_21439851.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC021]
gi|444756916|gb|ELW81453.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC021]
Length = 881
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 175/586 (29%), Positives = 306/586 (52%), Gaps = 53/586 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGINTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDAQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSAGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L +K +FA+H L+EL + I +++V + N L
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS---EAGIDNYHVTAQELNGNLILLH 772
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+++ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 773 KVQQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|269965240|ref|ZP_06179374.1| DNA mismatch repair protein MutS [Vibrio alginolyticus 40B]
gi|269830226|gb|EEZ84453.1| DNA mismatch repair protein MutS [Vibrio alginolyticus 40B]
Length = 853
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 190/580 (32%), Positives = 290/580 (50%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ IET+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCATPMGSRMLKRWLHQPMRCIETLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ EQ F Q K + +R+L + + D A+
Sbjct: 320 NRLDAIGEI--KEQALFADLQPTLKQIGDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V L + KYA+ I EV D E +
Sbjct: 367 ------LRNAMQQLPELESVTASLTHPYLTKL-------AKYAA---PIDEVCDLLERAI 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G + LD R+ +E + L RE + LK+ +NN
Sbjct: 411 KENPPVVIRDGGVIA--EGYNAELDEWRKLADGATEYLEQLERDERERHGIDTLKVGYNN 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 469 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQL- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + ++ L LA L LD++ N S Y RP ++ +
Sbjct: 527 ----WEELFDLLMPNLEKLQNLASALSQLDVLQNLAERADSLD----YCRPTLVKDAGIH 578
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + + FI N I ++ A M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 579 IQAGRHPVVEQVTTEPFIANPIELNPARKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 639 VPAESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 698
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 699 STYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPSQLPNLANVHLDAVEHGDSIAFM 758
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 759 HAVQEGAAS-KSYGLAVAGLAGVPKTVIKNARNKLSQLEQ 797
>gi|218710549|ref|YP_002418170.1| DNA mismatch repair protein MutS [Vibrio splendidus LGP32]
gi|254766647|sp|B7VK59.1|MUTS_VIBSL RecName: Full=DNA mismatch repair protein MutS
gi|218323568|emb|CAV19791.1| DNA mismatch repair protein mutS [Vibrio splendidus LGP32]
Length = 853
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 185/571 (32%), Positives = 294/571 (51%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T T G+R+L+ L QP+++I ++
Sbjct: 266 LDAATRRNLEITQNLGG---GTDN---TLAEVLDHTATAMGSRMLKRWLHQPMRNISALD 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E M + LF L L++ + +R+L + + D A+
Sbjct: 320 QRLDAIGE-MKDLALFTELQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A++ LP LA+ L + L + +YAS + E++ E +
Sbjct: 367 ------LRQAMEYLPELAETLTQLKHPYLTQL-------AQYASPVDEVSELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R +E + L + RE + LK+ +NN
Sbjct: 413 NPPVVIRDGGVIA--EGYNAELDEWRDLAAGATEFLDKLEQEERERHGIDTLKVGYNNVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E L+ ++K+ A E + E
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLSSKSKALAIEKKLWDE 529
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
L D + + L +A + LD++ N A T +D Y RP TE+ + I
Sbjct: 530 -----LFDLLLPYLERLQNIASSVSQLDVLQN-LAERADT--LD-YCRPTMTESAGVQIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I +++ M+I+TGPNM GKSTY++Q LI ++A IGCYVP
Sbjct: 581 AGRHPVVEQVMDEPFIANPIDLNDQRKMLIITGPNMGGKSTYMRQTALIALMAHIGCYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +TI +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 641 AESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL P + +H V + + F
Sbjct: 701 YDGLSLAWASAEWLANQINAMTLFATHYFELTELPNQIPTLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKAVIKNARA 790
>gi|418295682|ref|ZP_12907532.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
gi|379067015|gb|EHY79758.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
Length = 859
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 178/573 (31%), Positives = 284/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + + +L ++ +T G+RLL L +PL++ E +
Sbjct: 270 LDGASRRNLELDVNL------SGGRDNTLQSVMDRCQTAMGSRLLTRWLNRPLRNREILE 323
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQL L + +R+L + NA+
Sbjct: 324 ARQDSITCLLEHYRFEQLQPQLKDI-----GDLERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L ++D + L + S+ + A + R +ID
Sbjct: 367 -----DLARLRDALAALPQLQAGMQDLVAPHLLELATSISTYPELAELLARA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDPELDELQSLSENAGQYLMDLETREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSRQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + ++ L A L LD++ N ++ RP F E + I+ G
Sbjct: 531 YDELLEMLIGHLAPLQESAAALAELDVLSNLAERALNLD----LNRPRFVEQPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 587 RHPVVEQVLETPFVANDLGLDDATRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ D
Sbjct: 647 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ EHL L+A+T+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAEHLAKLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 798
>gi|448605562|ref|ZP_21658188.1| DNA mismatch repair protein MutS [Haloferax sulfurifontis ATCC
BAA-897]
gi|445741588|gb|ELZ93087.1| DNA mismatch repair protein MutS [Haloferax sulfurifontis ATCC
BAA-897]
Length = 919
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 176/592 (29%), Positives = 297/592 (50%), Gaps = 62/592 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+IE +H ++ SLF + T T G RLLR L +P +D +
Sbjct: 258 LELDATTQRNLELIETMHG------DRSGSLFDTIDHTVTSPGGRLLREWLTRPRRDRDE 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD ++ L S +E R + + +++ S+ +
Sbjct: 312 LARRLDAVESLASA------------ALARERVREVLDGAYDLERLASR------SASGS 353
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
S ++ ++ L LP LA ++ A S L + R + + A +R + + + E
Sbjct: 354 ARASDLLSVRDTLSVLPALADAIEGTELADSPLAEVVAR--PDRDAAADLRAELADALAE 411
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARR-----SFCDTSEAVHNLANKYREELKLP 232
D P TQ KG D L D+ R S+ DT LA++ + L
Sbjct: 412 D------PPKTVTQGGLFQKGYDDDLDDLIERHESAKSWLDT------LADREKRAHGLS 459
Query: 233 NLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAA 289
++ + N G+Y+ + K + ++P + Q+ N+ T EL +R + A
Sbjct: 460 HVTVDRNKTDGYYIQV-GKSVADQVPDHYRQIKTLKNSKRFVTEELEEKEREILRLEEAR 518
Query: 290 GECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
G+ E L + + +L + + +D + + H +TRP T
Sbjct: 519 GDLEYE---LFEDLRERVARRAELLQDVGRTIAEIDALASLATHAAGNG----WTRPELT 571
Query: 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
+ G L I+ GRHP++E+ DF+PN++ + + +IVTGPNMSGKSTY++Q LI +LA
Sbjct: 572 DAGALDIEAGRHPVVETT-TDFVPNDLRMDDDRGFLIVTGPNMSGKSTYMRQAALITLLA 630
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +VPA +T+ VVD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE
Sbjct: 631 QVGSFVPARSATVGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDE 690
Query: 470 LGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
+GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA V +H R+
Sbjct: 691 VGRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTSLADHLDRVANVHVAADERDG 750
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ F + DGP YG+ +A++AG+P V++ A + R+ +E K +E
Sbjct: 751 DVTFLRTVVDGPTD-RSYGIHVADLAGVPRPVVDRAGDVLDRL--REEKAIE 799
>gi|326389401|ref|ZP_08210968.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus JW
200]
gi|325994406|gb|EGD52831.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus JW
200]
Length = 867
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 186/610 (30%), Positives = 330/610 (54%), Gaps = 53/610 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +++NLEI+E + +KK SL +L T T G RLL+ L +PL + E
Sbjct: 266 MGLDSNAIKNLEILESNRN-----KSKKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEH 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RL+ ++EL ++ + L QFL K + +++ SK+ V + +
Sbjct: 321 IDARLEAVEELFNDYKNRQDLKQFLNK------------IYDLERLASKI--VYQSINPK 366
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
IS +K +L LP + ++L+ S LL + +CE K+ +++ I E+ID+ +
Sbjct: 367 DFIS----IKLSLQNLPYIKEILEKFNSRLL----KEICE--KFDTLQD-IYELIDKSI- 414
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + ++ IK G + +D R++ + + NL + RE+ + NL++ +N
Sbjct: 415 --KDDPSTQLKEGNIIKDGYNETVDKLRKASTEGKNWIANLEAEEREKTGIKNLRIGYNK 472
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + +I ++P +I+ N T EL + A E I E
Sbjct: 473 VFGYYIEVTKSNIP-QVPERYIRKQTLANAERYVTPELKEIE-ETILGAEEKLIELEY-- 528
Query: 301 EALVDAIREDVSVLTL----LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
L + IRE V + + A+ + +D+++ SFA T +RY +P + + I
Sbjct: 529 -QLFNEIREKVELQIVRIQNTAKYIATIDVLI-SFAEVAET---NRYIKPIVDYSDRIVI 583
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E+I ++ F+ N+I I ++I+TGPNM+GKSTY++QV LIV++AQIG +V
Sbjct: 584 KEGRHPVIETISDESFVANDIDIGPENPIMIITGPNMAGKSTYMRQVALIVLMAQIGSFV 643
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ I +VD+IFTR+G D++ + STFM EM E A ++++ + +SLI++DE+GR TS
Sbjct: 644 PASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTS 703
Query: 476 SSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IA + E++ +KA T+FA+H L++L V+ + V R + + F
Sbjct: 704 TYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMRGVRNYNVSVEEREDDIIFLR 763
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI----NCLQYKQIQ 590
++ G YG+ ++++AGLP +++E A+ I + + +V + E+ L + QI
Sbjct: 764 KIVPGGAD-KSYGIQVSKLAGLPYSIVERAKEILNSLESDKVIKSELENASQQLAFTQID 822
Query: 591 MLYHAAQRLI 600
+ A LI
Sbjct: 823 IFSTAKDSLI 832
>gi|387127529|ref|YP_006296134.1| DNA mismatch repair protein MutS [Methylophaga sp. JAM1]
gi|386274591|gb|AFI84489.1| DNA mismatch repair protein MutS [Methylophaga sp. JAM1]
Length = 849
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 184/569 (32%), Positives = 285/569 (50%), Gaps = 48/569 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID S RNLE+ + L G N +L +L T T GTRLLR LLQP +D+ T
Sbjct: 263 IRIDPQSRRNLELEQNLSG---GCEN---TLLSVLDNTVTPMGTRLLRRWLLQPKRDLTT 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R + L+ EQ Q L K + +R++ S
Sbjct: 317 LQQRQAAIGNLI--EQDVIAAVQTLLKPLGDIERIVTRVAL-----------------SS 357
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ L+ L ALP L + L Q+ LL I R + + + R +I+E
Sbjct: 358 ARPRDFVQLRRMLTALPNLHQSLSGTQARLLKQIDRELGTFPELLELLNRA--IIEEP-- 413
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + R A G LD R + ++ + NL + RE + LK+ +N
Sbjct: 414 ----PALIRDGGVIA--EGYHAELDRLRNLHLNANDFLRNLEQRERERTGVSTLKVGYNK 467
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
GF++ I +LP+ + + N T EL + + SA+ + +
Sbjct: 468 VHGFFIEISRAH-NIELPADYQRRQTLKNAERYITAELKTHEDQVLSASEKALALEKSLY 526
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E L I +++ LT A L LD++ N A T++ Y P T L+I
Sbjct: 527 EELFKLIHPELAALTYCAAALAELDVLTNLSERAQTLN------YVAPQLTAEQSLSIQA 580
Query: 359 GRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN++ ++E + M+++TGPNM GKSTY++Q LI I+A +G YVPA
Sbjct: 581 GRHPVVEAVQKTHFCPNDLQLTEQS-MLVITGPNMGGKSTYMRQTALIAIMAYMGSYVPA 639
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I +D+IFTR+G D+L S STFM EM E A ++ N S +SL++MDE+GR TS+
Sbjct: 640 DSAVIGPIDQIFTRIGASDDLASGRSTFMVEMNEAANILNNASAQSLVLMDEVGRGTSTF 699
Query: 478 DGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG A+AWSC E L+ + AYT+FA+H +++L +Y +H + +++ F QL
Sbjct: 700 DGLALAWSCAEKLVRDIGAYTLFATHYFEMTQLPGLYDKACNVHLDAIEHGDKIVFLHQL 759
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
K G + YGL +A++AG+P+ VI+ A+
Sbjct: 760 KPGAAN-QSYGLQVAQLAGVPNDVIQAAK 787
>gi|254507361|ref|ZP_05119496.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus 16]
gi|219549617|gb|EED26607.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus 16]
Length = 859
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 181/579 (31%), Positives = 298/579 (51%), Gaps = 55/579 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T T G+R+L+ L QP++DI+T+N
Sbjct: 271 LDAATRRNLEITQNLAG---GTDN---TLAEVLDHTATAMGSRMLKRWLHQPMRDIDTLN 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL +E LF L L++ + +R+L + + D A+
Sbjct: 325 HRLDAIAEL-KDEALFSDLHPVLKQI-GDIERILARLALRSARPR------DMAR----- 371
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP +++++ L+ + +YA+ + E++ E +
Sbjct: 372 ------LRYAMQQLPEVSELMSSLHHPYLSKL-------AQYAAPMGEVCELL-ERAIKE 417
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + + RE + +LK+ +NN
Sbjct: 418 NPPVVIRDGGVIA--EGYNAELDEWRKLADGATEYLEQMEQDERERHGIDSLKVGYNNVH 475
Query: 243 GFYLSIPHKDIQGKL-PSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRT 296
GF++ + Q L P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 476 GFFIQVSRG--QSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQL-- 531
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
E L D + + + +A + +D++ N S Y RP+ + + I
Sbjct: 532 ---WEELFDLLLPHLEQMQNVASAVSQIDVLQNLAERADSLD----YCRPNLIKEAGIHI 584
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + ++ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YV
Sbjct: 585 QAGRHPVVEQVMDEPFIANPIELNAQRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYV 644
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA +TI VDRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS
Sbjct: 645 PAESATIGSVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATQNSLVLMDEIGRGTS 704
Query: 476 SSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG ++AW+ E L L + T+FA+H L+EL + P + +H V + + F
Sbjct: 705 TYDGLSLAWASAEWLAKQLGSMTLFATHYFELTELPSQIPTLANVHLDAVEHGDSIAFMH 764
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P +VI+ AR+ +++ +
Sbjct: 765 AVQEGAAS-KSYGLAVAGLAGVPKSVIKNARAKLTQLEQ 802
>gi|262376218|ref|ZP_06069448.1| DNA mismatch repair protein MutS [Acinetobacter lwoffii SH145]
gi|262308819|gb|EEY89952.1| DNA mismatch repair protein MutS [Acinetobacter lwoffii SH145]
Length = 842
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 174/572 (30%), Positives = 298/572 (52%), Gaps = 53/572 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+IEPL GTS LF ++ +T G RLL L+QPL+D ++
Sbjct: 242 LDPVTRRNLELIEPLFE--HGTS-----LFQLINDCQTAMGGRLLSRTLMQPLRDTALLD 294
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + L L+ F + R++ ++V S++ + +A+
Sbjct: 295 ERLDAIQAL-------------LQGFHEAPVRLVLKEISDIERVLSRIA-LGSARPR--- 337
Query: 123 ISSIILLKTALDALPLLAKVLK----DAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L L+ QS LL + + + + + +R+ I E+
Sbjct: 338 --DLVQLRQACAQIPFLRHALQPIVSQQQSTLLVQLNEELGD---FHGLHQRLMSAIVEN 392
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ S+ + +L K RE+ +P LK+ +
Sbjct: 393 P-----PVLLRDGNVIA--EGFDSELDELRQIRDHASQFLIDLEIKEREQSGIPGLKIGY 445
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P +I+ N T EL + + S+ R ++
Sbjct: 446 NRVSGYYIELTRAQAE-QAPEHYIRRQTLKNAERYITPELKAFEDKVLSSESRALAREKM 504
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E L+D +R+D+ L +++ + +D+I N FAH + ++RP F+ ++I
Sbjct: 505 LFEMLLDELRQDIGSLQMMSSAIAQIDLIAN-FAHQARLR---NWSRPKFSPEIGVSITA 560
Query: 359 GRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ + + M I+TGPNM GKST+++Q LIV+LA G YVPA
Sbjct: 561 GRHPVVEALSKSAFTPNDTRLDFSHRMAIITGPNMGGKSTFMRQTALIVLLAYCGAYVPA 620
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+T+ VDR+FTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 621 QAATLGPVDRVFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTY 680
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L ++ +FA+H L+EL I +++V + N L
Sbjct: 681 DGLSLAWACVLDLTKRIQCLCLFATHYFELTELDK---ESGINNYHVTAKELNGNLILLH 737
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++ GP H GL +A++AG+P+ VI+ A++
Sbjct: 738 KVQHGPASQSH-GLQVAKLAGIPAAVIKEAQN 768
>gi|417547227|ref|ZP_12198313.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC032]
gi|421665424|ref|ZP_16105537.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC087]
gi|421672808|ref|ZP_16112762.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC099]
gi|400385115|gb|EJP43793.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC032]
gi|410378502|gb|EKP31120.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC099]
gi|410390182|gb|EKP42579.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC087]
Length = 881
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 174/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRILMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHENPVRMVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + ++ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKALHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|345017667|ref|YP_004820020.1| DNA mismatch repair protein mutS [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033010|gb|AEM78736.1| DNA mismatch repair protein mutS [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 867
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 186/610 (30%), Positives = 326/610 (53%), Gaps = 53/610 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +++NLEI+E + +KK SL +L T T G RLL+ L +PL + E
Sbjct: 266 MGLDSNAIKNLEILESNKN-----KSKKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEH 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RL ++EL ++ + L Q L K + +++ SK+ V + +
Sbjct: 321 IDARLQAVEELFNDYKNRQDLKQLLNK------------IYDLERLASKI--VYQSINPK 366
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
IS +K +L LP + ++L+ S LL + +CE I + I E+ID+ +
Sbjct: 367 DFIS----IKLSLQNLPYIKEILEKFNSRLL----KEICEK---FDILQDIYELIDKSI- 414
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + ++ IK G + +D R++ + + NL + RE+ + NL++ +N
Sbjct: 415 --KDDPSTQLKEGNIIKDGYNETVDKLRKASTEGKNWIANLEAEEREKTGIKNLRIGYNK 472
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + +I ++P FI+ N T EL + A E I E
Sbjct: 473 VFGYYIEVTKSNIP-QVPERFIRKQTLANAERYVTPELKEIE-ETILGAEEKLIELEY-- 528
Query: 301 EALVDAIREDVSVLTL----LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
L + IRE V + + A+ + ++D+++ SFA T +RY +P + + I
Sbjct: 529 -QLFNEIREKVELQIVRIQNTAKYIAIIDVLI-SFAEVAET---NRYIKPIVDYSDRIVI 583
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E+I ++ F+ N+I I ++I+TGPNM+GKSTY++QV LIV++AQIG +V
Sbjct: 584 TEGRHPVIETISDESFVANDIDIGSENPIMIITGPNMAGKSTYMRQVALIVLMAQIGSFV 643
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ I +VD+IFTR+G D++ + STFM EM E A ++++ + +SLI++DE+GR TS
Sbjct: 644 PASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTS 703
Query: 476 SSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IA + E++ +KA T+FA+H L++L V+ + V R + + F
Sbjct: 704 TYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGVRNYNVSVEEREDDIIFLR 763
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI----NCLQYKQIQ 590
++ G YG+ ++++AGLP +++E A+ I + + +V + E+ L + QI
Sbjct: 764 KIVPGGAD-KSYGIQVSKLAGLPYSIVERAKEILNSLENDKVIKSELENASQQLAFTQID 822
Query: 591 MLYHAAQRLI 600
+ A LI
Sbjct: 823 IFSTAKDSLI 832
>gi|225567942|ref|ZP_03776967.1| hypothetical protein CLOHYLEM_04015 [Clostridium hylemonae DSM
15053]
gi|225163230|gb|EEG75849.1| hypothetical protein CLOHYLEM_04015 [Clostridium hylemonae DSM
15053]
Length = 875
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 183/588 (31%), Positives = 299/588 (50%), Gaps = 57/588 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+++ RNLE+ E L K+ SL +L TKT G R LR + QPL D E
Sbjct: 261 MMLDSSTRRNLELCETLRE-----KQKRGSLLWVLDKTKTAMGARTLRKYIEQPLIDKEE 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
I RLD ++E + ++L + +R++C +K P+ +T+
Sbjct: 316 IERRLDAVEEFKEGAIAREEIREYLSPV-YDLERLVCKITYKSANPRDLTA--------- 365
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
K++L LP + +L D +S LL ++ S+ E S+ I + I E
Sbjct: 366 -----------FKSSLAMLPHIRCILGDMKSPLLRGLFDSLDTLEDLCSL---ITDAILE 411
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P +A ++ I+ G + +D R + D E + L + RE+ + NL++
Sbjct: 412 E------PPIA-MKEGGIIREGYNEEVDRLRAAKSDGKEWLAKLEEQEREKTGIKNLRIR 464
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
FN G+YL + + + +P + + N EL L A + Y
Sbjct: 465 FNKVFGYYLEVTNS-FKNLVPDYYTRKQTLANAERYIIPELKELEDTILGAEDKLYALEY 523
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
+ DAI ++ + A+ + +D+ F + Y RP E G + I
Sbjct: 524 ELYCQVRDAIAAEIVRIQTTAKAVAQIDV----FTSLALVAERNNYVRPKINERGIIDIK 579
Query: 358 GGRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E I ND FI N+ F+++ N + ++TGPNM+GKSTY++Q LIV+++QIG +
Sbjct: 580 DGRHPVVEKMIPNDMFIANDTFLNDRKNRISVITGPNMAGKSTYMRQTALIVLMSQIGSF 639
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + +VDRIFTR+G D+L S STFM EM E A +++N + RSL+++DE+GR T
Sbjct: 640 VPASSADVGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATGRSLLILDEIGRGT 699
Query: 475 SSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAW+ EH+ + L A T+FA+H L+EL NV ++ + ++ D
Sbjct: 700 STFDGLSIAWAVIEHISNSRLLGAKTLFATHYHELTELEGKIDNVN--NYCIAVKEKGDD 757
Query: 532 FKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F +K G YG+ +A++AG+P TVIE A+ I ++ ++
Sbjct: 758 IVFLRKIVKGGADK--SYGIQVAKLAGVPDTVIERAKEIVEELSHADI 803
>gi|406037373|ref|ZP_11044737.1| DNA mismatch repair protein MutS [Acinetobacter parvus DSM 16617 =
CIP 108168]
Length = 890
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 175/586 (29%), Positives = 305/586 (52%), Gaps = 53/586 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 282 LDPITRRNLEIIEPLFD--HGTS-----LFQLINDCQTAMGGRLLSRTLMQPIRDTAILD 334
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + Q L+ F + R++ ++V S+V + +A+
Sbjct: 335 ARLDASE-------------QLLKGFHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 377
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L VLK QS LL + + + + + S+ + + I E+
Sbjct: 378 --DLVQLRQACAQIPFLRHALTPVLKTQQSRLLTQLDQELGD---FKSLHQHLMAAIVEN 432
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K R+ + LK+ +
Sbjct: 433 P-----PVLLRDGNVIA--EGYDDELDELRKIRDHAGQFLIDLEIKERQRTGINTLKIGY 485
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R ++
Sbjct: 486 NRVSGYYIELTRVQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKL 544
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E+L+D +R++++ L +++ + +D++ N FAH ++ + RP FT + I G
Sbjct: 545 LFESLLDELRQNIAHLQMMSAAIAHIDVLAN-FAHQAR---LNNWARPEFTPETSIKIQG 600
Query: 359 GRHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E+++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G +VPA
Sbjct: 601 GRHPVVEALNKTPFTPNDTFLDSQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPA 660
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 661 KSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTY 720
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L +K +FA+H L+EL I +++V + N L
Sbjct: 721 DGLSLAWACVLDLTKRVKCLCLFATHYFELTELGG---EAGIDNYHVTAQELNGNLILLH 777
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+++ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 778 KVQHGPASQSH-GLQVAKLAGIPANVIKEAQKRLKILEKQQHQHLQ 822
>gi|146297052|ref|YP_001180823.1| DNA mismatch repair protein MutS [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|172046026|sp|A4XL47.1|MUTS_CALS8 RecName: Full=DNA mismatch repair protein MutS
gi|145410628|gb|ABP67632.1| DNA mismatch repair protein MutS [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 863
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 192/603 (31%), Positives = 309/603 (51%), Gaps = 79/603 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID ++ RNLE+ E + + +KK SLF +L KT G+RL++ L +PL D+
Sbjct: 254 LQIDLSTKRNLELTESIIA-----RSKKNSLFGILDQAKTSMGSRLIKKWLERPLIDVVE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++EL +N L + L + +R+ F +K NAK
Sbjct: 309 INRRLDAVEELYNNFPLLMQIEGLLEGI-YDIERLSSKFAYKSI----------NAK--- 354
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK +++ LP L ++L + +S LL +Y + E S+ I I+ED
Sbjct: 355 ----DLLSLKKSIEVLPRLKELLGEFKSPLLKELYNELDTLEDVYSL---IDSSINED-- 405
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A V ++ IK G + +D R ++ E + K R + NLK+ +N
Sbjct: 406 -APVGL----KEGGIIKDGFNDHVDRLRNISKNSKELLIQYEEKERNLTGIKNLKIGYNK 460
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGE---- 291
G+Y+ + + +P +I+ N T EL L N K E
Sbjct: 461 VFGYYIEVTKSNY-SLVPERYIRKQTLANAERYVTEELKKLEDEIINAEQKLVELEYELF 519
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
C IR +I E+ ++ I++ S + ++ + LC SFAH +RYT+P
Sbjct: 520 CQIRDKI--ESQIERIQKTASCIAII-DALC-------SFAHIAID---NRYTKPIVYLG 566
Query: 352 GPLAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVIL 408
+ I GRHP++E + +++F+PN+ + N V I+TGPNM+GKSTY++QV LIVI+
Sbjct: 567 DRIYIKNGRHPVVEKMIGYSNFVPNDTELDNDQNRVLIITGPNMAGKSTYMRQVALIVIM 626
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ+GC+VPA + I +VD+IF+R+G D++ S STFM EM E A +++N + +SLI+ D
Sbjct: 627 AQMGCFVPAEEAQIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIFD 686
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
E+GR TS+ DG +IAW+ E + + A T+FA+H L+EL VK
Sbjct: 687 EVGRGTSTYDGLSIAWAVLEFVADKSKIGAKTLFATHYHELTELEEKISGVK-------- 738
Query: 526 RNNRLDFKFQLKD--GPRHV------PHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
N R+D K + K+ R + YG+ +A +AG+P V++ A I ++ + ++
Sbjct: 739 -NYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLQRAEQILKKLEEADIN 797
Query: 578 RME 580
R E
Sbjct: 798 RKE 800
>gi|300770018|ref|ZP_07079897.1| DNA mismatch repair protein MutS [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762494|gb|EFK59311.1| DNA mismatch repair protein MutS [Sphingobacterium spiritivorum
ATCC 33861]
Length = 869
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 203/636 (31%), Positives = 324/636 (50%), Gaps = 72/636 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M +D ++RNLE+I G++N+ +L +L T + G RLL+ ++ PLKD
Sbjct: 266 MWLDRFTIRNLELI--------GSANENAVTLSDVLDHTASPMGARLLKRWIVMPLKDRV 317
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNA 116
+I RL+ ++ N L L Q +R+ + +R++ P++
Sbjct: 318 SIQERLNVVEHFHQNRSLRDELVQEIRQV-GDLERLISKIGLLKANPRE----------- 365
Query: 117 KKSQTLISSIILLKTALDALPLLAKVL---KDAQSFLLANIYRSVCENEKYASIRKRIGE 173
I+ LK +L A+ L K+L D +S + + + C + IR RI
Sbjct: 366 ---------IMQLKRSLYAIEKL-KILTGNADTESLKIISEQLNTC-----SLIRDRI-- 408
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
E + A P A GID LD R+ + + + + E +P+
Sbjct: 409 ---EREMQAEPPVALNKGNVMA--DGIDSELDRLRKIAFGGKDYLLEIQKREAEMTGIPS 463
Query: 234 LKLPFNNRQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
LK+ FNN G+YL + HKD K+P +I+ N T EL + A +
Sbjct: 464 LKIAFNNVFGYYLEVTNTHKD---KVPEGWIRKQTLVNAERYITEELKEYEEQILGAEEK 520
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
+ L+ AI E + + L A+++ LD+++N FA I+ K + Y +P +E+
Sbjct: 521 IQVIENRLYAELLSAIAEYIKPVQLNAQLVAKLDVLLN-FA-VIAEK--NFYVKPEISES 576
Query: 352 GPLAIDGGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
L I GGRHP++E I D+I N+ F+ ++A ++I+TGPNM+GKS L+Q LIV+
Sbjct: 577 KVLDIKGGRHPVIEKNLPIGQDYITNDTFLDNDAQQIIIITGPNMAGKSALLRQTGLIVL 636
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQIG +VPA + I +VD+IFTR+G DNL S STFM EM ETA +M N+S+RSLI++
Sbjct: 637 MAQIGSFVPAKTAHIGLVDKIFTRVGASDNLSSGESTFMVEMNETASIMNNLSDRSLILL 696
Query: 468 DELGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAW+ E L + +A T+FA+H L+EL+T P +K + V
Sbjct: 697 DEIGRGTSTYDGISIAWAIAEFLHNHPTARAKTLFATHYHELNELSTSMPRIKNFNVTVK 756
Query: 525 IRNNRLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINC 583
NN++ F +L G H +G+ +A++AG+P ++ A I R+ ++ +I
Sbjct: 757 EVNNKVIFLRKLVPGGSEH--SFGIHVAKLAGMPPKLLGRANEILKRLEQERTGGEQIK- 813
Query: 584 LQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNL 619
++ + A +L + E IR L NL
Sbjct: 814 ---DSMRKIQKQAYQLQMFAIDDPILEKIRDMLNNL 846
>gi|227538471|ref|ZP_03968520.1| DNA mismatch repair protein MutS [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241657|gb|EEI91672.1| DNA mismatch repair protein MutS [Sphingobacterium spiritivorum
ATCC 33300]
Length = 869
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 202/635 (31%), Positives = 323/635 (50%), Gaps = 70/635 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M +D ++RNLE+I G++N+ +L +L T + G RLL+ ++ PLKD
Sbjct: 266 MWLDRFTIRNLELI--------GSANENAVTLSDVLDHTASPMGARLLKRWIVMPLKDRV 317
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNA 116
+I RL+ ++ N+ L L Q +R+ + +R++ P++
Sbjct: 318 SIQERLNVVEHFHQNKSLRDELVQEIRQV-GDLERLISKIGLLKANPRE----------- 365
Query: 117 KKSQTLISSIILLKTALDALPLLAKVL--KDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
I+ LK +L A+ L + D +S + + + C + IR RI
Sbjct: 366 ---------IMQLKRSLYAIEKLKTLTGNADTESLKIISEQLNTC-----SLIRDRI--- 408
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
E + A P A GID LD R+ + + + + E +P+L
Sbjct: 409 --EREMQAEPPVALNKGNVMA--DGIDSELDRLRKIAFGGKDYLLEIQKREAELTGIPSL 464
Query: 235 KLPFNNRQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC 292
K+ FNN G+YL + HKD K+P +I+ N T EL + A +
Sbjct: 465 KIAFNNVFGYYLEVTNTHKD---KVPEGWIRKQTLVNAERYITEELKEYEEQILGAEEKI 521
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
+ L+ AI E + + L A+++ LD+++N FA I+ K + Y +P +E+
Sbjct: 522 QVIENRLYAELLSAIAEYIKPVQLNAQLVAKLDVLLN-FA-VIAEK--NFYVKPEISESK 577
Query: 353 PLAIDGGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
L I GGRHP++E I D+I N+ F+ ++A ++I+TGPNM+GKS L+Q LIV++
Sbjct: 578 VLDIKGGRHPVIEKNLPIGQDYITNDTFLDNDAQQIIIITGPNMAGKSALLRQTGLIVLM 637
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQIG +VPA + I +VD+IFTR+G DNL S STFM EM ETA +M N+S+RSLI++D
Sbjct: 638 AQIGSFVPAKTAHIGLVDKIFTRVGASDNLSSGESTFMVEMNETASIMNNLSDRSLILLD 697
Query: 469 ELGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
E+GR TS+ DG +IAW+ E L + +A T+FA+H L+EL+T P VK + V
Sbjct: 698 EIGRGTSTYDGISIAWAIAEFLHNHPTARAKTLFATHYHELNELSTSMPRVKNFNVTVKE 757
Query: 526 RNNRLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCL 584
NN++ F +L G H +G+ +A++AG+P ++ A I R+ ++ +I
Sbjct: 758 VNNKVIFLRKLVPGGSEH--SFGIHVAKLAGMPPKLLGRANEILKRLEQERTGGEQIK-- 813
Query: 585 QYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNL 619
++ + A +L + E IR L NL
Sbjct: 814 --DSMRKIQKQAYQLQMFAIDDPILEKIRDMLNNL 846
>gi|127555|sp|P27345.1|MUTS_AZOVI RecName: Full=DNA mismatch repair protein MutS
gi|142306|gb|AAA16868.1| mutS [Azotobacter vinelandii]
Length = 855
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 177/568 (31%), Positives = 282/568 (49%), Gaps = 42/568 (7%)
Query: 5 ATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTR 64
S RNLE+ L + + +L ++ +T G+RLL L +PL+D + R
Sbjct: 268 GASRRNLELDVNL------SGGRDNTLQSVIDRCQTAMGSRLLGRWLNRPLRDRAVLEAR 321
Query: 65 LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLIS 124
D + L+ + + F L L++ + +R+L + NA+
Sbjct: 322 QDTVACLLQDYR-FESLQPQLKEI-GDVERILARIGLR------------NARPR----- 362
Query: 125 SIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARV 184
+ L+ AL ALP L L ++ L + ++ + A + +R +ID
Sbjct: 363 DLARLRDALAALPQLQTALSPLEAPHLQALAGNIRTYPELAELLRRA--IIDNP------ 414
Query: 185 PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGF 244
P V R +K G D LD + + + +L + + LPNLK+ +N G+
Sbjct: 415 PAVIRDGGV--LKQGYDAELDELLSLSENAGQFLMDLEAREKARTGLPNLKVGYNRIHGY 472
Query: 245 YLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALV 304
Y+ +P + + P+ +I+ T EL + + SA R + E L+
Sbjct: 473 YIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKALYEELL 531
Query: 305 DAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPIL 364
+ + ++ L A L LD++ N ++ + RP F E L I GRHP++
Sbjct: 532 EILIAQLAPLQETATALAELDVLANLAERALNLD----FNRPRFVEEPCLRIRQGRHPVV 587
Query: 365 ESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR 423
E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA +
Sbjct: 588 EQVLDTPFVANDLELDDNTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAQSCELS 647
Query: 424 VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIA 483
+VDRIFTR+G+ D+L STFM EM ETA ++ N SERSL++MDE+GR TS+ DG ++A
Sbjct: 648 LVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASERSLVLMDEVGRGTSTFDGLSLA 707
Query: 484 WSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHV 543
W+ EHL L+A+T+FA+H L+ LA P V +H N R+ F + GP
Sbjct: 708 WAAAEHLAGLRAWTLFATHYFELTVLAESQPVVANVHLSATEHNERIVFLHHVLPGPASQ 767
Query: 544 PHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI AR +R+
Sbjct: 768 -SYGLAVAQLAGVPGPVISRAREHLARL 794
>gi|445443234|ref|ZP_21442569.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-A-92]
gi|444762805|gb|ELW87157.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-A-92]
Length = 881
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 173/584 (29%), Positives = 302/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + NLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRHNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + ++ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKALHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|448593353|ref|ZP_21652351.1| DNA mismatch repair protein MutS [Haloferax elongans ATCC BAA-1513]
gi|445730261|gb|ELZ81851.1| DNA mismatch repair protein MutS [Haloferax elongans ATCC BAA-1513]
Length = 944
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 174/587 (29%), Positives = 291/587 (49%), Gaps = 75/587 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ + SA G++ LF +L T G R L A L +PL D +
Sbjct: 275 LQLDATAIRSLELFDS-RSAHAGST-----LFSVLDETACAPGRRRLEAWLRRPLVDRDA 328
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD + EL + L + L + +++ ++V + +
Sbjct: 329 IEARLDAVGELADDALTRADLREHLSA------------VYDLERLVARV------SRER 370
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ L+T LD +P + L + S LA++ S+ + A +R I I +D
Sbjct: 371 ANARDLRSLQTTLDRVPEIRGTLDNVDSGRLADLRDSL---DDLADVRDLIDRAIVDDPP 427
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + G D LD R + + E V +L + RE + +L + +N
Sbjct: 428 Q-------EITEGGVVASGFDDELDDLRGTATEGREWVSDLEARERERTGIDSLDVGYNQ 480
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLELASLNVRNKSAAGE------- 291
G+Y+ + + ++ K+P ++ Q +K+ + L+ + + + E
Sbjct: 481 VHGYYIEVTNPNLD-KVPDDYVRRQTLKNSERFYTPELKEREDEILSATERAETLEYDLF 539
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
C +R E+ E A+ DA+ D+ VL LA+V D YTRP
Sbjct: 540 CEVRAEVAAESERIQAVADAL-ADLDVLRTLADVAVAND-----------------YTRP 581
Query: 347 HFTENGPLA-----IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQ 401
F E G A I+ GRHP++E ++F+PN + + + +VTGPNMSGKSTY++Q
Sbjct: 582 EFREEGTEAHGGIEIEAGRHPVVERTQDEFVPNPTSLPQ-GGVALVTGPNMSGKSTYMRQ 640
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
V L+ ILAQ+G +VPA + + VVDR+FTR+G D++ STFM EM E ++ N +E
Sbjct: 641 VALVCILAQLGSFVPARAACLPVVDRVFTRVGASDDIAGGQSTFMREMSELTEILHNATE 700
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILH 520
SL+++DE+GR TS++DG AIA + E + + A T+FA+H +L++ A+ V LH
Sbjct: 701 DSLVLLDEVGRGTSTADGLAIARATTEFIHDEVGAMTLFATHYHDLTDAASERSGVFNLH 760
Query: 521 FYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
F + + F + +GP YG+ +A++AG+P V++ AR +
Sbjct: 761 FTAAQTDGEVTFLHSVAEGPSS-SSYGVEVAQLAGVPPAVVDRARGL 806
>gi|157364284|ref|YP_001471051.1| DNA mismatch repair protein MutS [Thermotoga lettingae TMO]
gi|167012384|sp|A8F753.1|MUTS_THELT RecName: Full=DNA mismatch repair protein MutS
gi|157314888|gb|ABV33987.1| DNA mismatch repair protein MutS [Thermotoga lettingae TMO]
Length = 811
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 166/563 (29%), Positives = 290/563 (51%), Gaps = 49/563 (8%)
Query: 18 HSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQL 77
H +L G K ++LF +L TKT G+RLL+ +LQPL+D+ IN RLD + + + L
Sbjct: 261 HLSLVG-GEKGKNLFDVLNHTKTSMGSRLLKNWILQPLRDLYEINKRLDKVQAFVEDSIL 319
Query: 78 FFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALP 137
+ ++L+ ++ R+ + + + ++ L++ L P
Sbjct: 320 LNEIREYLQAV-RDIQRIANRINY-----------------GKASVKDLVALRSTLQVCP 361
Query: 138 LLAKVLKDAQSF---LLANIYRSVCE--NEKYASIRKRIGEVIDEDVLHARVPFVARTQQ 192
+ +VL ++F + + +CE N+ +I++ VI E +
Sbjct: 362 YIKEVLLTNEAFPEAAMVDCLHDICEILND---AIKEEPSSVIGEGKV------------ 406
Query: 193 CFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKD 252
IK G D LD R + E ++N + R+ +PNL++ +N+ G+Y+ I
Sbjct: 407 ---IKEGYDEQLDQLRELVYHSQEFLNNFEQRERDRTGIPNLRVGYNSVFGYYIEITKSH 463
Query: 253 IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVS 312
+ K+P +++ N T EL + +A R + + + ++ V
Sbjct: 464 L-SKIPPNYVRKQTLVNAERFITDELKEFEQKMLTAKENLERREKEIYDEICASLSSKVG 522
Query: 313 VLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFI 372
++ LAE L +D ++++ A+ YT+P F+ +G L + RHP++E + + F+
Sbjct: 523 LIIELAEFLAQID-VLSTLAYVAIRYG---YTKPSFSNDGKLLLRNSRHPVVERLVDTFV 578
Query: 373 PNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRM 432
PN++ + N +I+TGPNMSGKST+++QV L+ I+AQ+G +VPA + + V DRIF +M
Sbjct: 579 PNDLEMDRTKNFIILTGPNMSGKSTFIRQVALVSIMAQMGSFVPADEAILPVFDRIFAKM 638
Query: 433 GTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492
G D++ S STF+ EM E A ++ +E SLI++DE+GR TS+ DG +IAW+ E+L +
Sbjct: 639 GIRDDIASGKSTFLIEMNEVAKIVYQATENSLILLDEVGRGTSTFDGISIAWAVSEYLQN 698
Query: 493 -LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLA 551
+ IFA+H L+ELA +Y + V+ N++ F ++ DG YG+ +A
Sbjct: 699 QISCKCIFATHFTELTELAKMYDGIVNKTVQVIEEKNQVIFLHRVVDGIAD-RSYGIEVA 757
Query: 552 EVAGLPSTVIETARSITSRITKK 574
+AGLP +I+ AR + I K
Sbjct: 758 GIAGLPGEIIQRAREVLDVIANK 780
>gi|359428288|ref|ZP_09219324.1| DNA mismatch repair protein MutS [Acinetobacter sp. NBRC 100985]
gi|358236304|dbj|GAB00863.1| DNA mismatch repair protein MutS [Acinetobacter sp. NBRC 100985]
Length = 879
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 182/603 (30%), Positives = 312/603 (51%), Gaps = 66/603 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QPL+D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLINDCQTAMGGRLLSRTLMQPLRDTAILD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + Q L+ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDATE-------------QLLKGYHEAPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A VLK S LL + + + + S+ + + + I E+
Sbjct: 373 --DLVQLRQACAQIPFLRHALAPVLKTQNSKLLMQLDHELGD---FKSLHQHLMDAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDDELDELRKIRDHAGQFLIDLEIKERERTGINTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R ++
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKL 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E+L+D +R++++ L +++ + +D++ N FAH ++ + RP FT + I
Sbjct: 540 LFESLLDELRQNIAHLQMMSAAIANIDILAN-FAHQAR---LNNWARPEFTPETGIKIQA 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E+++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G +VPA
Sbjct: 596 GRHPVVEALNKAPFTPNDTFLDTQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 KSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L +K +FA+H L+EL + I +++V + N L
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS---EAGIDNYHVTAQELNGNLILLH 772
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYH 594
+++ GP H GL +A++AG+P+ VI+ A+ KR++I L+ +Q Q L +
Sbjct: 773 KVQHGPASQSH-GLQVAKLAGIPANVIKEAQ-----------KRLKI--LEKQQHQHLQN 818
Query: 595 AAQ 597
+ Q
Sbjct: 819 SVQ 821
>gi|392940989|ref|ZP_10306633.1| DNA mismatch repair protein MutS [Thermoanaerobacter siderophilus
SR4]
gi|392292739|gb|EIW01183.1| DNA mismatch repair protein MutS [Thermoanaerobacter siderophilus
SR4]
Length = 867
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 185/610 (30%), Positives = 330/610 (54%), Gaps = 53/610 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +++NLEI+E + +KK SL +L T T G RLL+ L +PL + E
Sbjct: 266 MGLDSNAIKNLEILESNRN-----KSKKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEH 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RL+ ++EL ++ + L QFL K + +++ SK+ V + +
Sbjct: 321 IDARLEAVEELFNDYKNRQDLKQFLNK------------IYDLERLASKI--VYQSINPK 366
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
IS +K +L LP + ++L+ S LL + +CE K+ +++ I E+ID+ +
Sbjct: 367 DFIS----IKLSLQNLPYIKEILEKFNSRLL----KEICE--KFDTLQD-IYELIDKSI- 414
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + ++ IK G + +D R++ + + NL + RE+ + NL++ +N
Sbjct: 415 --KDDPSTQLKEGNIIKDGYNETVDKLRKASTEGKNWIANLEAEEREKTGIKNLRIGYNK 472
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + +I ++P +I+ N T EL + A E I E
Sbjct: 473 VFGYYIEVTKSNIP-QVPERYIRKQTLANAERYVTPELKEIE-ETILGAEEKLIELEY-- 528
Query: 301 EALVDAIREDVSVLTL----LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
L + IRE V + + A+ + +D+++ SFA T +RY +P + + I
Sbjct: 529 -QLFNEIREKVELQIVRIQNTAKYIATIDVLI-SFAEVAET---NRYIKPIVDYSDRIVI 583
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E+I ++ ++ N+I I ++I+TGPNM+GKSTY++QV LIV++AQIG +V
Sbjct: 584 KEGRHPVIETISDESYVANDIDIGPENPIMIITGPNMAGKSTYMRQVALIVLMAQIGSFV 643
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ I +VD+IFTR+G D++ + STFM EM E A ++++ + +SLI++DE+GR TS
Sbjct: 644 PASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTS 703
Query: 476 SSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IA + E++ +KA T+FA+H L++L V+ + V R + + F
Sbjct: 704 TYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMRGVRNYNVSVEEREDDIIFLR 763
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI----NCLQYKQIQ 590
++ G YG+ ++++AGLP +++E A+ I + + +V + E+ L + QI
Sbjct: 764 KIVPGGAD-KSYGIQVSKLAGLPYSIVERAKEILNSLESDKVIKSELENASQQLAFTQID 822
Query: 591 MLYHAAQRLI 600
+ A LI
Sbjct: 823 IFSTAKDSLI 832
>gi|86146340|ref|ZP_01064664.1| DNA mismatch repair protein [Vibrio sp. MED222]
gi|85835819|gb|EAQ53953.1| DNA mismatch repair protein [Vibrio sp. MED222]
Length = 853
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 184/571 (32%), Positives = 294/571 (51%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L G+ N +L +L T T G+R+L+ L QP+++I ++
Sbjct: 266 LDAATRRNLEITQNLGG---GSDN---TLAEVLDHTATAMGSRMLKRWLHQPMRNISALD 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E M + LF L L++ + +R+L + + D A+
Sbjct: 320 QRLDAIGE-MKDLALFTELQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A++ LP LA+ L + L + +YAS + E++ E +
Sbjct: 367 ------LRQAMEYLPELAETLTQLKHPYLTQL-------AQYASPVDEVSELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R +E + L + RE + LK+ +NN
Sbjct: 413 NPPVVIRDGGVIA--EGYNAELDEWRDLAAGATEFLDKLEQEERERHGIDTLKVGYNNVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E L+ ++K+ A E + E
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLSSKSKALAIEKKLWDE 529
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
L D + + L +A + LD++ N A T +D Y RP TE+ + I
Sbjct: 530 -----LFDLLLPYLERLQNIASSVSQLDVLQN-LAERADT--LD-YCRPTMTESAGVQIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I +++ M+I+TGPNM GKSTY++Q LI ++A IGCYVP
Sbjct: 581 AGRHPVVEQVMDEPFIANPIDLNDQRKMLIITGPNMGGKSTYMRQTALIALMAHIGCYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +TI +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 641 AESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL P + +H V + + F
Sbjct: 701 YDGLSLAWASAEWLANQINAMTLFATHYFELTELPNQIPTLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKAVIKNARA 790
>gi|410623640|ref|ZP_11334452.1| DNA mismatch repair protein MutS [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410156856|dbj|GAC29826.1| DNA mismatch repair protein MutS [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 904
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 176/569 (30%), Positives = 290/569 (50%), Gaps = 48/569 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + +NLE+ L + + + +LF +L T T G+RLL+ L +P+ D +
Sbjct: 279 MDAATQQNLELTRTL------SGSTENTLFSVLNNTSTAMGSRLLQRWLHRPITDKNKLF 332
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + ++ ++ + L FL++ + +R+L + +++ D
Sbjct: 333 FRQNSIADVQRHD--YSILQDFLKQI-GDIERILARMALR----SARPRDFSR------- 378
Query: 123 ISSIILLKTALDALPLLAKVLKD----AQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
LK A++ LP L + L+D +Q + R + E A + R +ID
Sbjct: 379 ------LKEAVNILPDLQQWLRDCMPSSQHDSFSIFSRDIGEYPNVAELLNRA--IIDNP 430
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P V R A G LD R ++ + L K RE +P LK+ +
Sbjct: 431 ------PVVLRDGGVIA--EGYSEELDELRALSKGATDFLDRLEQKERERTGIPTLKVNY 482
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N GF++ + H +I K+P +++ NN EL + + ++ + +
Sbjct: 483 NRVHGFFIEVSHANID-KIPPDYVRRQTLKNNERYIIPELKAHEDKVLTSQSKALALEKK 541
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL D I +++ L A L LD++ N FA T + R P E +
Sbjct: 542 LYEALFDDIAPELTSLMQSAVALATLDVLTN-FAERADTLNLHR---PELVEQNIINYSE 597
Query: 359 GRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRH ++E + H+ FI N +F+ + M+++TGPNM GKSTY++Q LIV+LA +GCYVPA
Sbjct: 598 GRHLVVEEVMHSPFIANPLFMDDKTRMLMITGPNMGGKSTYMRQTALIVLLAYVGCYVPA 657
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 658 KEAQIGPIDRIFTRIGAADDLASGRSTFMVEMTETANILNNATANSLVLMDEIGRGTSTY 717
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AWSC + L L A+T+FA+H L+ L+ P + +H V ++ + F Q+
Sbjct: 718 DGLSLAWSCAQWLSEKLHAFTLFATHYFELTSLSDSIPTITNVHLSAVEHDDEIRFMHQV 777
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+ G + YGL +A++AG+P VI++A+
Sbjct: 778 QQGAAN-KSYGLQVAKLAGVPKAVIDSAK 805
>gi|448513837|ref|ZP_21616768.1| DNA mismatch repair protein MutS [Halorubrum distributum JCM 9100]
gi|448526653|ref|ZP_21619922.1| DNA mismatch repair protein MutS [Halorubrum distributum JCM 10118]
gi|445692990|gb|ELZ45153.1| DNA mismatch repair protein MutS [Halorubrum distributum JCM 9100]
gi|445698880|gb|ELZ50918.1| DNA mismatch repair protein MutS [Halorubrum distributum JCM 10118]
Length = 931
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 175/587 (29%), Positives = 295/587 (50%), Gaps = 52/587 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+++DAT+ RNLEI E + G SLF + T T G RLLR L +P +D E
Sbjct: 264 VDVDATTQRNLEITETMRGDADG------SLFDTVDHTVTAAGGRLLREWLTRPRRDREA 317
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD ++ L S ++ R + + +++ ++ + ++
Sbjct: 318 LAARLDAVEALASA------------ALARDRVREVLGDAYDLERLAART--TSGSAGAR 363
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+S ++ L LP LA + A S A + R + E+ A++R+ + E + E
Sbjct: 364 ELLS----VRDTLALLPDLADAIGGTALADSPAAAVLDR--VDRERAAALREELAEALAE 417
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D P A+T +K G DG LD + + LA + + + L ++ +
Sbjct: 418 D------PPKAKTGGGL-LKAGYDGELDELIERHEEVKSWLDGLAEREKRQHGLSHVTVD 470
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYI 294
N G+Y+ + K + ++P + ++ N+ T ELA +R + A GE
Sbjct: 471 RNKTDGYYIQV-GKSVADQVPEHYREIKTLKNSKRFVTDELAEKEREVLRLEEARGELEY 529
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
E L + + E +L + LD + + H +TRP T L
Sbjct: 530 D---LFEELRERVAERAELLQDAGRAVAELDALASLATHAARRD----WTRPELTTERRL 582
Query: 355 AIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
++ GRHP++E DF+PN++ + +IVTGPNMSGKSTY++Q LI +LAQ G +
Sbjct: 583 DVEAGRHPVVEGT-TDFVPNDLRLDAERGFLIVTGPNMSGKSTYMRQAALIQLLAQAGSF 641
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + +VD I+TR+G +D L STFM EM+E + ++ + + SL+++DE+GR T
Sbjct: 642 VPARAAEVGLVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATADSLVILDEVGRGT 701
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
++ DG +IAW+ E+L + ++A T+FA+H L+ LA P V +H V R+ + F
Sbjct: 702 ATYDGISIAWAATEYLHNEVRARTLFATHYHELTTLADHLPRVANVHVAVDERDGEVTFL 761
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
++DGP + YG+ +A++AG+P V+ A + R+ +E K +E
Sbjct: 762 RTVRDGPTN-RSYGVHVADLAGVPDPVVSRADEVLDRL--REEKAIE 805
>gi|197335682|ref|YP_002155290.1| DNA mismatch repair protein MutS [Vibrio fischeri MJ11]
gi|238690254|sp|B5FAC8.1|MUTS_VIBFM RecName: Full=DNA mismatch repair protein MutS
gi|197317172|gb|ACH66619.1| DNA mismatch repair protein MutS [Vibrio fischeri MJ11]
Length = 854
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 190/634 (29%), Positives = 310/634 (48%), Gaps = 71/634 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L +L +L T T G+RLL+ L QP++ + +N
Sbjct: 268 LDAATRRNLEITQNLAGGF------NHTLAEILDHTSTAMGSRLLKRWLHQPVRTHDVLN 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL + LF ++ L+ + +R+L + +
Sbjct: 322 QRLDAIGELKES-GLFADIAPQLKNI-GDVERILARLALRSARP---------------- 363
Query: 123 ISSIILLKTALDALPLLAKVLKD-AQSFLL-----ANIYRSVCENEKYASIRKRIGEVID 176
+ L+ AL LP L++ ++ Q+ LL A S+CE +
Sbjct: 364 -RDLARLRNALQQLPELSQTTQEFQQNHLLTLAASAQPIDSICE--------------LL 408
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
E + P V R A G + LD R ++ + L + RE + LK+
Sbjct: 409 ERAIKENPPVVIRDGGVLA--DGYNEELDQWRDLANGATQYLEKLEQEERERHDIDTLKV 466
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE 291
+NN GFY+ I K K P+ ++ Q +K+ L E LN ++K+ A E
Sbjct: 467 GYNNVHGFYIQI-SKGQSHKAPAHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAIE 525
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFT 349
+ E L D + + L +A + LD++ N A T++ Y RP T
Sbjct: 526 KRL-----WEELFDQLLPHLEQLQSMANAISELDVLSNLAERADTLN------YCRPVLT 574
Query: 350 ENGPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
+ + I+GGRHP++E + +D FI N I ++ M+I+TGPNM GKSTY++Q LI ++
Sbjct: 575 KETGINIEGGRHPVVEQVMSDPFIANPIKLNPDRKMLIITGPNMGGKSTYMRQTALIALM 634
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
A +GCYVPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MD
Sbjct: 635 AHVGCYVPADSAEIGTLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKHSLVLMD 694
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS+ DG ++AW+ E L + + A T+FA+H L+EL ++ + +H V
Sbjct: 695 EIGRGTSTYDGLSLAWASAEWLATKINAMTLFATHYFELTELPNLFTGLANVHLDAVEHG 754
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK--RMEINCLQ 585
+ + F +++G + YGL +A +AG+P +VI+ A+ + +V +
Sbjct: 755 DEIAFMHAVQEGAAN-KSYGLAVASLAGVPKSVIKKAKQKLQHLESGQVSVPATSTTVKE 813
Query: 586 YKQIQMLYHAAQRLICLKYSNQDEESIRHALQNL 619
Q+ ++ ++ L N D+ + R AL+ L
Sbjct: 814 EHQLSLIPEISEVEEALANVNPDDLTPRQALEEL 847
>gi|354544802|emb|CCE41527.1| hypothetical protein CPAR2_800790 [Candida parapsilosis]
Length = 787
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 171/581 (29%), Positives = 308/581 (53%), Gaps = 38/581 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M IDA+++R+LE++ L+ GT+ F L T G RLLR ++ QPL ++E+
Sbjct: 182 MLIDASTIRDLELVSSLNGN--GTT-----FFSFLNKCTTKMGQRLLRTSIRQPLTNVES 234
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ + EL+S E + F + L+KFP + D++ F P+ S+ +
Sbjct: 235 IKLRLESVTELISQENMLFAIKNVLKKFP-DLDKLFASF-LNPESNISQ----------E 282
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++I++I+ LK+ L L L+ ++S L+ + + ++E + I ++I ED
Sbjct: 283 SMINNILSLKSTLLLCSELLNCLEPSESPLIVQV-SDILKHENIGTAILLINKLIHEDCR 341
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN---LKLP 237
A+ Q+ A+K G++GLLD++R + E + N+Y + + + N +
Sbjct: 342 SAKRSIDVAHQRANAVKSGVNGLLDVSR----NVRETILEQVNEYVQNISVENGAVVDYR 397
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
++ +GF+L I FI ++K N I C+T++L + R E +
Sbjct: 398 YDKSRGFFLRIKCTAFDNP---DFINIIKKKNGIECTTIDLLKQSSRLSGIMAEINNISS 454
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
I + L + E+ + ++AE + +D++ S+A +S++ Y P F + + +
Sbjct: 455 IIISELYEQSCENTPIFFMIAEAIATVDLLC-SYASFVSSQ-TKSYVCPEFGKY--IHVR 510
Query: 358 GGRHPILESIHNDFIPNNIF-ISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
RHPILE + DF+PN+ + E + I+TG NMSGKS YL+Q+ I+I++Q+G YVP
Sbjct: 511 QSRHPILEQVVLDFVPNDYSCVPEISRFQIITGANMSGKSVYLKQIAYILIMSQMGLYVP 570
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++TI++ IF+R+ + D + ++S+F EM E +++N S I++DELGR +S
Sbjct: 571 ADYATIKIHKSIFSRISS-DTTDLDASSFSNEMTEICRILKNADSESFIIIDELGRGSSL 629
Query: 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DGF+I + EHL++ +A +H + ++E+ V H + + +L+ KF+L
Sbjct: 630 RDGFSICLALLEHLITTRASVFTTTHFKEIAEILGSKSCVLASHMKTIEADGKLESKFKL 689
Query: 537 KDGPRHVPHYGLLLAEVAG-LPSTVIETARSITSRITKKEV 576
+ G YG+ AE + LP ++ ++SI + I K +V
Sbjct: 690 EPGKLEFDRYGIRYAESSQMLPPELLRESKSI-AEILKSQV 729
>gi|167040248|ref|YP_001663233.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X514]
gi|256750830|ref|ZP_05491715.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914332|ref|ZP_07131648.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X561]
gi|307724432|ref|YP_003904183.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X513]
gi|166854488|gb|ABY92897.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X514]
gi|256750413|gb|EEU63432.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889267|gb|EFK84413.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X561]
gi|307581493|gb|ADN54892.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X513]
Length = 867
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 185/610 (30%), Positives = 325/610 (53%), Gaps = 53/610 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +++NLEI+E + +KK SL +L T T G RLL+ L +PL + E
Sbjct: 266 MGLDSNAIKNLEILESNKN-----KSKKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEH 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RL ++EL ++ + L Q L K + +++ SK+ V + +
Sbjct: 321 IDARLQAVEELFNDYKNRQDLKQLLNK------------IYDLERLASKI--VYQSINPK 366
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
IS +K +L LP + ++L+ S LL + +CE I + I E+ID+ +
Sbjct: 367 DFIS----IKLSLQNLPYIKEILEKFNSRLL----KEICEK---FDILQDIYELIDKSI- 414
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + ++ IK G + +D R++ + + NL + RE+ + NL++ +N
Sbjct: 415 --KDDPSTQLKEGNIIKDGYNETVDKLRKASTEGKNWIANLEAEEREKTGIKNLRIGYNK 472
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + +I ++P FI+ N T EL + A E I E
Sbjct: 473 VFGYYIEVTKSNIP-QVPERFIRKQTLANAERYVTPELKEIE-ETILGAEEKLIELEY-- 528
Query: 301 EALVDAIREDVSVLTL----LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
L + IRE V + + A+ + ++D+++ SFA T +RY +P + + I
Sbjct: 529 -QLFNEIREKVELQIVRIQNTAKYIAIIDVLI-SFAEVAET---NRYIKPIVDYSDRIVI 583
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E+I ++ F+ N+I I ++I+TGPNM+GKSTY++QV LIV++AQIG +V
Sbjct: 584 KEGRHPVIETISDESFVANDIDIGSENPIMIITGPNMAGKSTYMRQVALIVLMAQIGSFV 643
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ I +VD+IFTR+G D++ + STFM EM E A ++++ + +SLI++DE+GR TS
Sbjct: 644 PASYAKIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTS 703
Query: 476 SSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IA + E++ +KA T+FA+H L++L V+ + V R + + F
Sbjct: 704 TYDGMSIAHAVIEYIHEKIKAKTLFATHYHELTKLEGKMKGVRNYNVSVEEREDDIIFLR 763
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI----NCLQYKQIQ 590
++ G YG+ ++++AGLP +++E A+ I + + + + E+ L + QI
Sbjct: 764 KIVPGGAD-KSYGIQVSKLAGLPYSIVERAKEILNSLENDKAIKSELENASQQLAFTQID 822
Query: 591 MLYHAAQRLI 600
+ A LI
Sbjct: 823 IFSTAKDSLI 832
>gi|307546337|ref|YP_003898816.1| DNA mismatch repair protein MutS [Halomonas elongata DSM 2581]
gi|307218361|emb|CBV43631.1| DNA mismatch repair protein [Halomonas elongata DSM 2581]
Length = 861
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 177/581 (30%), Positives = 289/581 (49%), Gaps = 49/581 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S RNLEI L GT N +L +L TT T G+RLL+ L +PL+D ++
Sbjct: 267 IDAASRRNLEIGVNLGG---GTDN---TLASVLDTTSTAMGSRLLKRWLNRPLRDRAQVS 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCH---FCFKPKKVTSKVLDVDNAKKS 119
R + L+ + F + L+ + +R+L + +P+ +
Sbjct: 321 GRQAAVAALLDGDG-FVAPREALKAI-GDVERILARVALYSARPRDLAR----------- 367
Query: 120 QTLISSIILLKTALDALPLL-AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
L+ AL+ALP L A++ + + L ++ R + Y ++ + + E+
Sbjct: 368 ---------LRDALNALPELEAELARFDEGTALDDLKRRI---HPYPTLADTLSRALMEN 415
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P V R I G D LD R + + L + RE LP LK+ +
Sbjct: 416 P-----PVVIRDGGV--IAEGFDAELDEHRGLAEHAGDYLIELETRERERTGLPGLKVGY 468
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ IP + P +I+ N EL + SA R ++
Sbjct: 469 NRVHGYYIEIPRAQAR-DAPVDYIRRQTLKNAERFIIPELKEFEDKALSAKSRALAREKL 527
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L+D + ++S L + L LD++ + A + +D + RP E +I G
Sbjct: 528 LYDGLLDDLNAELSTLQATGQALAALDVLA-TLAE--RARALD-FVRPELPETAGFSIRG 583
Query: 359 GRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E + F+PN++ + + M+++TGPNM GKSTY++Q LI +LA G +VPA
Sbjct: 584 GRHPVVEQVSETPFVPNDLNMDDERRMLVITGPNMGGKSTYMRQAALITLLAHTGSFVPA 643
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++I VDRIFTR+G+ D+L STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 644 DAASIGPVDRIFTRIGSSDDLAGGRSTFMVEMTETANILHNATDHSLVLMDEIGRGTSTF 703
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
DG ++AW+ E L +A+T+FA+H ++ LA V +H + F +++
Sbjct: 704 DGLSLAWASAEQLTRSRAFTLFATHYFEMTALAEQASGVANVHLTATEHKEGIVFMHRVE 763
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
DGP YGL +A++AG+P VI AR + + ++E+ +
Sbjct: 764 DGPAS-QSYGLQVAQLAGVPQAVIARAREKLASLEQQEIDQ 803
>gi|423685247|ref|ZP_17660055.1| DNA mismatch repair protein MutS [Vibrio fischeri SR5]
gi|371495748|gb|EHN71343.1| DNA mismatch repair protein MutS [Vibrio fischeri SR5]
Length = 854
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 189/628 (30%), Positives = 310/628 (49%), Gaps = 59/628 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L +L +L T T G+RLL+ L QP++ + +N
Sbjct: 268 LDAATRRNLEITQNLAGGF------NHTLAEILDHTSTAMGSRLLKRWLHQPVRTHDVLN 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL + LF ++ L+ + +R+L + +
Sbjct: 322 QRLDAIGELKES-GLFADMAPQLKNI-GDVERILARLALRSARP---------------- 363
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL LP L++ ++ Q L + S + SI + + I E+
Sbjct: 364 -RDLARLRNALQQLPELSQTTQEFQQDHLLTLAASA---QPIDSICELLERAIKENP--- 416
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R ++ + L + RE + LK+ +NN
Sbjct: 417 --PVVIRDGGVLA--DGYNEELDQWRDLANGATQYLEKLEQEERERHDIDTLKVGYNNVH 472
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ I K K P+ ++ Q +K+ L E LN ++K+ A E +
Sbjct: 473 GFYIQI-SKGQSHKAPAHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAIEKRL--- 528
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L +A + LD++ N A T++ Y RP T+ +
Sbjct: 529 --WEELFDQLLPHLEQLQSMANAISELDVLSNLAERADTLN------YCRPVLTKETGIN 580
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+GGRHP++E + +D FI N I ++ M+I+TGPNM GKSTY++Q LI ++A +GCY
Sbjct: 581 IEGGRHPVVEQVMSDPFIANPIKLNPDRKMLIITGPNMGGKSTYMRQTALIALMAHVGCY 640
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 641 VPADSAEIGTLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKHSLVLMDEIGRGT 700
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL ++ + +H V + + F
Sbjct: 701 STYDGLSLAWASAEWLATKINAMTLFATHYFELTELPNLFTGLANVHLDAVEHGDEIAFM 760
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE--VKRMEINCLQYKQIQM 591
+++G + YGL +A +AG+P +VI+ A+ + + V + Q+ +
Sbjct: 761 HAVQEGAAN-KSYGLAVASLAGVPKSVIKKAKQKLQHLESGQVPVPATSATVKEEHQLSL 819
Query: 592 LYHAAQRLICLKYSNQDEESIRHALQNL 619
+ ++ L N D+ + R AL+ L
Sbjct: 820 IPEISEVEEALANVNPDDLTPRQALEEL 847
>gi|312793677|ref|YP_004026600.1| DNA mismatch repair protein muts [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180817|gb|ADQ40987.1| DNA mismatch repair protein MutS [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 863
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 191/609 (31%), Positives = 306/609 (50%), Gaps = 81/609 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID + RNLE+ E + ++K SL +L TKT G+RLL+ + +PL D+
Sbjct: 254 LQIDINTKRNLELTESIIQ-----RSRKNSLLGILDQTKTSMGSRLLKKWIERPLIDVIE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD +++L SN + + + L + + +R+ F +K NAK
Sbjct: 309 INRRLDSVEQLKSNYSILVQIEELLSRM-YDIERLSSKFAYKNV----------NAK--- 354
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK +++ LP L K+L + LL IY + + I I I+ED
Sbjct: 355 ----DLLSLKRSIEVLPALKKLLSSFSAQLLKEIYEGL---DTLEDIYALIDSSINEDA- 406
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK G + +D R ++ E + K R + NL++ +N
Sbjct: 407 ----PVTLK--EGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIKNLRIGYNK 460
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE--------- 291
G+Y+ + + +P +I+ N T EL L A +
Sbjct: 461 VFGYYIEVTKSNY-SLVPDRYIRKQTLANAERYITEELKKLEDEILGADQKLIELEYQLF 519
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFTE 350
C IR I EA ++ I++ S + +L +VLC SFA +D Y RP+
Sbjct: 520 CEIRDRI--EAQIERIQKTASYIAIL-DVLC-------SFARI----AIDNEYVRPNVCL 565
Query: 351 NGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVI 407
+ GRHP++E + +FIPN+ + +A N V I+TGPNM+GKSTY++QV LIVI
Sbjct: 566 GDRIYFKNGRHPVVEKMIGRGNFIPNDTELDQAENRVLIITGPNMAGKSTYMRQVALIVI 625
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+GC+VPA + I +VD+IF+R+G D++ S STFM EM E A +++N + +SLI+
Sbjct: 626 MAQMGCFVPADEAHIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIF 685
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAW+ E++ + A T+FA+H L+EL P VK
Sbjct: 686 DEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVK------- 738
Query: 525 IRNNRLDFKFQLKD--GPRHV------PHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
N R+D K + K+ R + YG+ +A +AG+P V++ A I ++ + ++
Sbjct: 739 --NYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEEILKQLEEADI 796
Query: 577 KRMEINCLQ 585
R I L+
Sbjct: 797 NRKNIRKLR 805
>gi|448607730|ref|ZP_21659683.1| DNA mismatch repair protein MutS [Haloferax sulfurifontis ATCC
BAA-897]
gi|445737667|gb|ELZ89199.1| DNA mismatch repair protein MutS [Haloferax sulfurifontis ATCC
BAA-897]
Length = 928
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 176/582 (30%), Positives = 292/582 (50%), Gaps = 53/582 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ E SA G++ LF +L T G R L A L +PL D +
Sbjct: 287 LQLDATAIRSLELFES-RSARAGST-----LFSVLDETACALGRRRLEAWLRRPLVDRDR 340
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD +D L + L L + +++ ++V + +
Sbjct: 341 IEARLDAVDALCDDALARADLRDHLSS------------VYDLERLVARV------SRER 382
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P + + L S LLA++ S+ E E +R +G+ + D
Sbjct: 383 ADARDLRSLKTTLDRVPEIREALAGTDSDLLADLRDSLDELED---VRDLVGDAVVSDPP 439
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G D LD R + E V NL + +E + +L++ +N
Sbjct: 440 Q-------EITEGGVIADGFDAELDEVRGTAEAGREWVSNLEAREQERTGIDSLEVGYNQ 492
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE---- 291
G+Y+ + + ++ ++P + Q +K+ + L E L +++ A E
Sbjct: 493 VHGYYIEVTNPNLD-RVPDDYQRRQTLKNSERFYTPELKEREDEILRASDRADALEYDLF 551
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
C +R ++ E A+ DA+ D+ VL LA+V D F ++
Sbjct: 552 CEVRADVATESARIQAVADAL-ADLDVLRTLADVAVANDYARPEFHGDAASSAGSTDEAG 610
Query: 347 HFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406
E G + ID GRHP++E ++F+PN + ++ +VTGPNMSGKSTY++QV L+
Sbjct: 611 ATGEAGGIHIDAGRHPVVERAQDEFVPNPAALPR-GSVALVTGPNMSGKSTYMRQVALVC 669
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
+LAQ+G +VPA + + V+DR+FTR+G D++ STFM EM E ++ N + SL++
Sbjct: 670 VLAQVGGFVPAKSAELPVLDRVFTRIGASDDIAGGQSTFMREMSELTEILHNATGDSLVL 729
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
+DE+GR TS++DG AIA + E L + A T+FA+H +L++ A V LHF
Sbjct: 730 LDEVGRGTSTADGLAIARAATEFLHDEVGATTLFATHYHDLTDAADDREGVFNLHFTAAR 789
Query: 526 RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
R+ + F + DGP YG+ +A++AG+P++V+ ARS+
Sbjct: 790 RDGEVTFLHSVADGPSS-SSYGVEVAQLAGVPASVVGRARSL 830
>gi|120555003|ref|YP_959354.1| DNA mismatch repair protein MutS [Marinobacter aquaeolei VT8]
gi|166232124|sp|A1U2E8.1|MUTS_MARAV RecName: Full=DNA mismatch repair protein MutS
gi|120324852|gb|ABM19167.1| DNA mismatch repair protein MutS [Marinobacter aquaeolei VT8]
Length = 874
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 171/566 (30%), Positives = 282/566 (49%), Gaps = 43/566 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLEI + L G ++ +L ++ T T G R LR L +PL+D+E +
Sbjct: 266 LDAASRRNLEI----DTNLMG--GQQHTLAWVMDRTATAMGARELRRWLNRPLRDVERVR 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + L K + +R+L + +
Sbjct: 320 QRQQAVSALLDG--FHYEPVHDLLKRVGDIERILARVALRSARP---------------- 361
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A ALP L + LK S + + + E + A + +R +ID
Sbjct: 362 -RDLARLRDAFHALPELQEALKPVNSHHVVKLATVIGEYPELADLLERA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G D LD R + + + ++ + RE + LK+ +N
Sbjct: 415 --PVVIRDGGVIA--EGFDEELDELRNISENAGQYLLDVETRERERTGISTLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I + P +I+ N T EL + SA R + +
Sbjct: 471 GYYIEISRAQ-SDQAPVDYIRRQTLKNAERFITPELKEFEDKALSAKSRALAREKGLYDD 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
+++ + E ++ L A+ L LD++ N FA ++ R+T P FT+ ++ GRHP
Sbjct: 530 VLETVAEQLAPLQDAAQALAELDVLSN-FAERATSL---RFTAPEFTDQPGFDVEEGRHP 585
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + ++ F+PNN+ + M+++TGPNM GKSTY++Q LI +LA G +VPA+ +
Sbjct: 586 VVEQLLDEPFVPNNLLMDTKRRMLVITGPNMGGKSTYMRQAALIALLAYTGSFVPANRAV 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ VDRIFTRMG+ D++ STFM EM ETA ++ N +E SL++MDE+GR TS+ DG +
Sbjct: 646 LGPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+ EHL +++ YT+FA+H L++LA + +H ++ + F + DGP
Sbjct: 706 LAWATAEHLAKNIRCYTLFATHYFELTQLADDLEHAVNVHLTATEHDDSIVFLHNVHDGP 765
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARS 566
YGL +A++AG+P VI A++
Sbjct: 766 AS-QSYGLQVAKLAGVPQDVIRNAKT 790
>gi|326794019|ref|YP_004311839.1| DNA mismatch repair protein mutS [Marinomonas mediterranea MMB-1]
gi|326544783|gb|ADZ90003.1| DNA mismatch repair protein mutS [Marinomonas mediterranea MMB-1]
Length = 880
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 177/572 (30%), Positives = 284/572 (49%), Gaps = 57/572 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID + +NLEI + L T + +L +L T T G+RLL+ L P++ ++ ++
Sbjct: 272 IDGATRKNLEIDQNL------TGTQTNTLVSVLDTCATPMGSRLLKRWLHTPIRQLDELH 325
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L E + L L K + +R+L + +
Sbjct: 326 QRQSAVKAL--KEGFGYDLLLPLLKQVGDLERILSRVALRSARP---------------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L+ AL++ P + +L Q L ++Y+ + E A+ R L
Sbjct: 368 -RDLLRLRFALESFPEIRLILDSLQDQRLESLYKRIIEQPVIANTLVR--------ALVE 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R F G D LD + ++ + L +E + +LK+ +N
Sbjct: 419 NPPSVIRDGGIFDT--GYDAELDELISLSTNATDYLAELERSEKERTGIQSLKVGYNRVH 476
Query: 243 GFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ I H D+ P +I+ N T EL + SA + R +
Sbjct: 477 GYYIEISRLHSDMA---PVEYIRRQTLKNAERFITPELKEFEDKALSAKSKALAREKQLY 533
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTR-----PHFTENGPLA 355
E L+D + E + L ++ + LD++ SFA +R R P NG ++
Sbjct: 534 EGLLDQLNEVLGELQTSSQAVAQLDLLT-SFA--------ERAERLSFHCPELHNNGGIS 584
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++ES+ +D FIPN++ ++ +++++TGPNM GKSTY++QV +I +LA G +
Sbjct: 585 IQAGRHPVVESVISDPFIPNDLELNRQRSLLMITGPNMGGKSTYMRQVAIITLLAHTGSF 644
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I VVDRIFTRMG+ D+L STFM EM ETA ++ N S+ SL++MDE+GR T
Sbjct: 645 VPAQKASISVVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNASKDSLVLMDEVGRGT 704
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AWS E+L + LK Y +FA+H L+ LA P +H + + F
Sbjct: 705 STFDGLSLAWSAVEYLANQLKCYVLFATHYFELTTLAEQLPQAANVHLTATEYEDEIVFM 764
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
Q+ DGP YGL +A++AG+P +VI A+
Sbjct: 765 HQVHDGPAS-QSYGLQVAQLAGVPRSVIGNAK 795
>gi|407009237|gb|EKE24416.1| hypothetical protein ACD_6C00128G0002 [uncultured bacterium]
Length = 877
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 174/572 (30%), Positives = 298/572 (52%), Gaps = 53/572 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+IEPL GTS LF ++ +T G RLL L+QPL+D ++
Sbjct: 277 LDPVTRRNLELIEPLFE--HGTS-----LFQLINDCQTAMGGRLLSRTLMQPLRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + L L+ F + R++ ++V S++ + +A+
Sbjct: 330 ERLDAIQAL-------------LQGFHEVPVRLVLKEISDIERVLSRIA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLLAKVLK----DAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L L+ QS LL + + + + + +R+ I E+
Sbjct: 373 --DLVQLRQACAQIPFLRHALQPIVSQQQSKLLVQLNEELGD---FHGLHQRLMSAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ S+ + +L K RE+ +P LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGFDSELDELRQIRDHASQFLIDLEIKEREQSGIPGLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P +I+ N T EL + + S+ R ++
Sbjct: 481 NRVSGYYIELTRAQAE-QAPEHYIRRQTLKNAERYITPELKAFEDKVLSSESRALAREKM 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E L+D +R+D+ L +++ + +D+I N FAH + ++RP F+ ++I
Sbjct: 540 LFEMLLDELRQDIGNLQMMSSAIAQIDLIAN-FAHQARLR---NWSRPKFSPEVGVSITA 595
Query: 359 GRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN++ + + M I+TGPNM GKST+++Q LIV+LA G YVPA
Sbjct: 596 GRHPVVEALSKSAFTPNDMRLDFSHRMAIITGPNMGGKSTFMRQTALIVLLAYCGAYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+T+ VDR+FTR+G+ D+L + STFM EM ET+ ++ + + SL++MDE+GR TS+
Sbjct: 656 QAATLGPVDRVFTRIGSADDLSTGKSTFMVEMTETSQILHHATSHSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L ++ +FA+H L+EL I +++V + N L
Sbjct: 716 DGLSLAWACVLDLTKRIQCLCLFATHYFELTELDK---ESGINNYHVTAKELNGNLILLH 772
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++ GP H GL +A++AG+P+ VI+ A++
Sbjct: 773 KVQHGPASQSH-GLQVAKLAGIPAAVIKEAQN 803
>gi|372268852|ref|ZP_09504900.1| DNA mismatch repair protein MutS [Alteromonas sp. S89]
Length = 887
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 174/567 (30%), Positives = 285/567 (50%), Gaps = 45/567 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLEI L+ G N S+F KT G+RLLR L PL+++ T+
Sbjct: 273 LDPASRRNLEIDTNLNG---GDDNTLLSVFDACKTAM---GSRLLRRWLNNPLRNLNTLQ 326
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+S+ + F L + L+ + +R+L + +++ D+
Sbjct: 327 QRQNAISALISDYR-FEPLREALKPI-GDMERILGRLALR----SARPRDLSR------- 373
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L +L P L L + + LL + R + E + + KR L
Sbjct: 374 ------LGMSLAQFPELQSQLSETDAALLGQLNREMGEWPQTVELLKR--------ALVE 419
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R + I G D LD R + + + L + +E +P LK+ +N
Sbjct: 420 NPPVVIR--EGGVIADGFDEELDELRGISENAGDYLVQLEVREKERTGIPTLKVGYNRVH 477
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ I + K P+ +I+ N T EL + SA R + E
Sbjct: 478 GYFIEI-SRGQSDKAPADYIRRQTLKNAERFITPELKEFEDKALSAKSRALAREKFLYEE 536
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L+ + E ++ L A + LD++ N R T+P +E + ++GGRHP
Sbjct: 537 LITTLNESLAELQTAAAAVSQLDVLGNMAERADQL----RLTKPELSEQPGIHVEGGRHP 592
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + D F+ N+I + + M+++TGPNM GKSTY++Q LI +LA G +VPA +
Sbjct: 593 VVEQVLEDPFVANDIDLHTSRRMLVITGPNMGGKSTYMRQTALIALLAHCGSFVPADSAR 652
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I ++DRIFTR+G+ D+L STFM EM ETA +++N SE SLI+MDE+GR TS+ DG +
Sbjct: 653 IGLLDRIFTRIGSADDLAGGRSTFMVEMTETANILRNASEHSLILMDEIGRGTSTYDGLS 712
Query: 482 IAWSCCEHLLS--LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
+AW+C H L+ ++A+T+FA+H L+EL V +H + + F ++++G
Sbjct: 713 LAWACA-HFLADHVRAFTLFATHYFELTELPEQCGEVANIHLNATEHGDSIVFLHRIQEG 771
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARS 566
P YGL +A++AG+P V++ A++
Sbjct: 772 PAS-KSYGLQVAKLAGIPQEVLDEAKA 797
>gi|296810572|ref|XP_002845624.1| DNA mismatch repair protein [Arthroderma otae CBS 113480]
gi|238843012|gb|EEQ32674.1| DNA mismatch repair protein [Arthroderma otae CBS 113480]
Length = 804
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/420 (32%), Positives = 236/420 (56%), Gaps = 11/420 (2%)
Query: 157 SVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSE 216
++C Y + + E ++EDV + R + +A+K G++ LLD+AR+++ + ++
Sbjct: 251 ALCSPSNYEPVLSLLSETLNEDVRYQSSALDLRNHRTYAVKAGVNNLLDVARQTYKEAND 310
Query: 217 AVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCST 275
V L + +E +P L L F + + +Y + D+ + LP FI V + + T
Sbjct: 311 DVTQLTARLTDEYDIP-LDLRFESGRHYYFRVRSFDLREAALPDVFINVYRKKAYVEFQT 369
Query: 276 LELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTI 335
L+L +N + + E ++ ++ L+D IR +S L + E + +LDM+ +FA+
Sbjct: 370 LDLVKMNQKITDSHNEVISMSDRSIQELIDDIRSQISNLFRIGEAIAMLDMMA-AFAYL- 427
Query: 336 STKPVDRYTRPHFTENGPLAIDGGRHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSG 394
+ + Y RP T+ +AI GRHPI E IH +IPN+++ S + I+TG NMSG
Sbjct: 428 --QNMQDYARPKITDT--IAIKSGRHPIREKIHATKYIPNDVYASPQSRFQIITGCNMSG 483
Query: 395 KSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAF 454
KSTY++ V L+ ++AQIG VPA +++ +V ++F R+ T DN +N STF TEM+E AF
Sbjct: 484 KSTYIRSVALMTVMAQIGSSVPAQYASFPIVHQLFARISTDDNQVTNVSTFSTEMREMAF 543
Query: 455 VMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYP 514
++ N+ +S++++DELGR T+S DG AI+ + E L++ A F +H +L +
Sbjct: 544 ILHNIDAKSMVIIDELGRGTASVDGLAISIAIAEALVATHALVWFTTHFRDLPRIMEHRS 603
Query: 515 NVKILHFYVVIRN--NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRIT 572
V LH V + N +++ +++ DG HYGL LA + LP ++E A ++ +T
Sbjct: 604 GVINLHLAVDLSNTQSKMTMLYKIVDGYVQEQHYGLALARIFCLPPYLLEVAERVSHHLT 663
>gi|448451271|ref|ZP_21592754.1| DNA mismatch repair protein MutS [Halorubrum litoreum JCM 13561]
gi|445810705|gb|EMA60721.1| DNA mismatch repair protein MutS [Halorubrum litoreum JCM 13561]
Length = 931
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 175/587 (29%), Positives = 295/587 (50%), Gaps = 52/587 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+++DAT+ RNLEI E + G SLF + T T G RLLR L +P +D E
Sbjct: 264 VDVDATTQRNLEITETMRGDADG------SLFDTVDHTVTAAGGRLLREWLTRPRRDREA 317
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD ++ L S ++ R + + +++ ++ + ++
Sbjct: 318 LAARLDAVEALASA------------ALARDRVREVLGDAYDLERLAART--TSGSAGAR 363
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+S ++ L LP LA + A S A + R + E+ A++R+ + E + E
Sbjct: 364 ELLS----VRDTLALLPDLADAIGGTALADSPAAAVLDR--VDRERAAALREELAEALAE 417
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D P A+T +K G DG LD + + LA + + + L ++ +
Sbjct: 418 D------PPKAKTGGGL-LKAGYDGELDELIERHEEVKSWLDGLAEREKRKHGLSHVTVD 470
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYI 294
N G+Y+ + K + ++P + ++ N+ T ELA +R + A GE
Sbjct: 471 RNKTDGYYVQV-GKSVADQVPEHYREIKTLKNSKRFVTDELAEKEREVLRLEEARGELEY 529
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
E L + + E +L + LD + + H +TRP T L
Sbjct: 530 D---LFEELRERVAERAELLQDAGRAVAELDALASLATHAARRD----WTRPELTTERRL 582
Query: 355 AIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
++ GRHP++E DF+PN++ + +IVTGPNMSGKSTY++Q LI +LAQ G +
Sbjct: 583 DVEAGRHPVVEGT-TDFVPNDLRLDAERGFLIVTGPNMSGKSTYMRQAALIQLLAQAGSF 641
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + +VD I+TR+G +D L STFM EM+E + ++ + + SL+++DE+GR T
Sbjct: 642 VPARAAEVGLVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATADSLVILDEVGRGT 701
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
++ DG +IAW+ E+L + ++A T+FA+H L+ LA P V +H V R+ + F
Sbjct: 702 ATYDGISIAWAATEYLHNEVRARTLFATHYHELTTLADHLPRVANVHVAVDERDGEVTFL 761
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
++DGP + YG+ +A++AG+P V+ A + R+ +E K +E
Sbjct: 762 RTVRDGPTN-RSYGVHVADLAGVPDPVVSRADEVLDRL--REEKAIE 805
>gi|448577265|ref|ZP_21642895.1| DNA mismatch repair protein MutS [Haloferax larsenii JCM 13917]
gi|445727910|gb|ELZ79519.1| DNA mismatch repair protein MutS [Haloferax larsenii JCM 13917]
Length = 947
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 174/587 (29%), Positives = 290/587 (49%), Gaps = 75/587 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ + SA G++ LF +L T G R L A L +PL D +
Sbjct: 275 LQLDATAIRSLELFDS-RSAHAGST-----LFSVLDETACALGRRRLEAWLRRPLVDRDA 328
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD + EL + L + L + +++ ++V + +
Sbjct: 329 IEARLDAVGELADDALTRADLREHLSA------------VYDLERLVARV------SRER 370
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ L+T LD +P + L S LA++ S+ + +R I I +D
Sbjct: 371 ANARDLRSLQTTLDRVPEIRATLDSVDSGRLADLRDSL---DDLGDVRDLIDRAIVDDPP 427
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G D LD R + + E V +L + RE + +L + +N
Sbjct: 428 Q-------EITEGGVIASGFDDELDDLRGTATEGREWVSDLEAQERERTGIDSLDVGYNQ 480
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLELASLNVRNKSAAGE------- 291
G+Y+ + + ++ K+P ++ Q +K+ + L+ + + + E
Sbjct: 481 VHGYYIEVTNPNLD-KVPDDYVRRQTLKNSERFYTPELKEREDEILSATERAETLEYDLF 539
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
C +R E+ E A+ DA+ D+ VL LA+V D YTRP
Sbjct: 540 CEVRAEVAAESERIQAVADAL-ADLDVLRTLADVAVAND-----------------YTRP 581
Query: 347 HFTENGP-----LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQ 401
F E G + I+ GRHP++E ++F+PN + + + +VTGPNMSGKSTY++Q
Sbjct: 582 EFREEGSEGHGGIEIEAGRHPVVERTQDEFVPNPTSLPQ-GGVALVTGPNMSGKSTYMRQ 640
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
V L+ ILAQ+G +VPA + + VVDR+FTR+G D++ STFM EM E ++ N +E
Sbjct: 641 VALVCILAQLGSFVPARAARLPVVDRVFTRVGASDDIAGGQSTFMREMSELTEILHNATE 700
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILH 520
SL+++DE+GR TS++DG AIA + E + + A T+FA+H +L++ A+ V LH
Sbjct: 701 DSLVLLDEVGRGTSTADGLAIARATTEFIHDEVGAMTLFATHYHDLTDAASERSGVFNLH 760
Query: 521 FYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
F + + F + +GP YG+ +A++AG+P TV++ AR +
Sbjct: 761 FTATQTDGEVTFLHSVAEGPSS-SSYGVEVAQLAGVPPTVVDRARGL 806
>gi|387813627|ref|YP_005429109.1| methyl-directed mismatch repair protein [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381338639|emb|CCG94686.1| methyl-directed mismatch repair protein [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 874
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 171/566 (30%), Positives = 282/566 (49%), Gaps = 43/566 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLEI + L G ++ +L ++ T T G R LR L +PL+D+E +
Sbjct: 266 LDAASRRNLEI----DTNLMG--GQQHTLAWVMDRTATAMGARELRRWLNRPLRDVERVR 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + L K + +R+L + +
Sbjct: 320 QRQQAVSALLDG--FHYEPVHDLLKRVGDIERILARVALRSARP---------------- 361
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A ALP L + LK S + + + E + A + +R +ID
Sbjct: 362 -RDLARLRDAFHALPELQEALKPVNSHHVVKLATVIGEYPELADLLERA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G D LD R + + + ++ + RE + LK+ +N
Sbjct: 415 --PVVIRDGGVIA--EGFDEELDELRNISENAGQYLLDVETRERERTGISTLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I + P +I+ N T EL + SA R + +
Sbjct: 471 GYYIEISRAQ-SDQAPVDYIRRQTLKNAERFITPELKEFEDKALSAKSRALAREKGLYDD 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
+++ + E ++ L A+ L LD++ N FA ++ R+T P FT+ ++ GRHP
Sbjct: 530 VLETVAEQLAPLQDAAQALAELDVLSN-FAERATSL---RFTAPEFTDQPGFDVEEGRHP 585
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + ++ F+PNN+ + M+++TGPNM GKSTY++Q LI +LA G +VPA+ +
Sbjct: 586 VVEQLLDEPFVPNNLLMDTRRRMLVITGPNMGGKSTYMRQAALIALLAYTGSFVPANRAV 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ VDRIFTRMG+ D++ STFM EM ETA ++ N +E SL++MDE+GR TS+ DG +
Sbjct: 646 LGPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+ EHL +++ YT+FA+H L++LA + +H ++ + F + DGP
Sbjct: 706 LAWATAEHLAKNIRCYTLFATHYFELTQLADDLEHAVNVHLTATEHDDSIVFLHNVHDGP 765
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARS 566
YGL +A++AG+P VI A++
Sbjct: 766 AS-QSYGLQVAKLAGVPQDVIRNAKT 790
>gi|389847474|ref|YP_006349713.1| DNA mismatch repair protein MutS [Haloferax mediterranei ATCC
33500]
gi|388244780|gb|AFK19726.1| DNA mismatch repair protein MutS [Haloferax mediterranei ATCC
33500]
Length = 954
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 177/592 (29%), Positives = 294/592 (49%), Gaps = 55/592 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++++LE+ + ++ +LF +L T G R L A L +PL D E
Sbjct: 315 LQLDATAIQSLELFDSR------STRAGSTLFSVLDETACALGRRRLEAWLRRPLVDREA 368
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD +D L + L L + +++ ++V + +
Sbjct: 369 IEARLDAVDALCDDALSRADLRDHLSS------------VYDLERLVARV------SRER 410
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P + + L + S LL+ + S+ E E +R +G I D
Sbjct: 411 ANARDLRSLKTTLDRVPEIRESLAETDSALLSKLRDSLDELE---CVRDLVGRAIVTDPP 467
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G + LD R + D E V NL + RE + +L++ +N
Sbjct: 468 Q-------EITEGGVIADGFNAELDDLRGTAEDGREWVSNLEVQERERTGIDSLEVGYNQ 520
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE---- 291
G+Y+ + + ++ ++P ++ Q +K+ + L E L +++ A E
Sbjct: 521 VHGYYIEVTNPNLD-RVPDDYVRRQTLKNSERFYTPELKEREDEILRAADRADALEYDLF 579
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
C +R ++ E A+ D + D+ VL LA+V D F H S + +
Sbjct: 580 CEVRADVATESERIQAVADVL-ADLDVLRTLADVAVANDYARPEF-HGGSAGGGENTSNA 637
Query: 347 HFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406
F G + ID GRHP++E +F+PN I + + ++TGPNMSGKSTY++QV L+
Sbjct: 638 KFDGEG-IEIDAGRHPVVERAQGEFVPNPASIPQG-GVALITGPNMSGKSTYMRQVALVC 695
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
ILAQ+G +VPA + + VVDR+FTR+G D++ STFM EM E ++ N ++ SL++
Sbjct: 696 ILAQMGSFVPADAARLPVVDRVFTRIGASDDIAGGQSTFMREMSELTEILHNATDDSLVL 755
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
+DE+GR TS++DG AIA + E + + A T+FA+H +L++ A V LHF
Sbjct: 756 LDEVGRGTSTADGLAIARAATEFVHDEVGAMTLFATHYHDLTDAAADRDGVFNLHFTATQ 815
Query: 526 RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
R+ + F + DGP YG+ +A +AG+PSTV++ AR++ E +
Sbjct: 816 RDGEVTFLHSVADGPSS-SSYGVEVAHLAGVPSTVVDRARNLVEEDVSNEAE 866
>gi|397904383|ref|ZP_10505299.1| DNA mismatch repair protein MutS [Caloramator australicus RC3]
gi|397162603|emb|CCJ32633.1| DNA mismatch repair protein MutS [Caloramator australicus RC3]
Length = 858
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 183/590 (31%), Positives = 311/590 (52%), Gaps = 55/590 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ + +NLE+ E L T +KK +L +L T T G RLLR + +PL +I+
Sbjct: 256 MILDSFTRKNLELTETLR-----TRSKKGTLIDVLDKTLTAMGGRLLRKWIEEPLMNIKE 310
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKS 119
IN RL+ ++E + N + L +FLR + +++ SK+ + NA+
Sbjct: 311 INKRLEAVEEFIDNIYISSDLREFLRNI------------YDIERILSKISCESANARDL 358
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L K ++ LP + LK+ +S L+ I + I I I E+
Sbjct: 359 NAL-------KQSISMLPDIKAALKECRSDLIREIENDF---DTLDDIYNLINAAIIEN- 407
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V+ ++ IK G + +D R + + + L + +EE + +LK+ +N
Sbjct: 408 -----PPVS-VKEGGIIKSGYNQEVDKLRDAMLNGKNWIAELEQREKEETGIKSLKVGYN 461
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I ++ +I+ N T EL + E I E+
Sbjct: 462 KVFGYYIEITKANLSLIPKDRYIRKQTLANAERFITPELKE--IEENILGAESKI-VELE 518
Query: 300 LEALVDA---IREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
E VD + V + +A+ L ++D+++ SFA +S + + Y +P T +G + I
Sbjct: 519 YELFVDVRNKVYSQVERIKKIAQYLAIIDVLL-SFAR-VSFE--NNYVKPEITNDGIIEI 574
Query: 357 DGGRHPILES-IHNDFIPNNIFISEAANMVIV-TGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E I + F+PN+ + NM+I+ TGPNM+GKSTYL+QV LI +L+Q+GC+
Sbjct: 575 IDGRHPVVEKVISSPFVPNDTILDNKENMIIIITGPNMAGKSTYLRQVALITLLSQVGCF 634
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +VDRIFTR+G D+L STFM EM E + +++N ++ SLI++DE+GR T
Sbjct: 635 VPAKKAKISIVDRIFTRIGASDDLSLGQSTFMVEMTEVSNILKNATKNSLIILDEVGRGT 694
Query: 475 SSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG +IAWS E++ S+ A T+FA+H L+EL VK ++ + ++ + D
Sbjct: 695 STYDGLSIAWSVIEYINKSIGAKTLFATHYHELTELEGKIKGVK--NYCISVKEHGDDII 752
Query: 534 FQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
F ++ G YG+ +A++AGLP VI+ A+ I +++ + ++ +++
Sbjct: 753 FLRKIVRGGADQ--SYGIQVAKLAGLPDEVIKKAKEILAKLEENDINKIK 800
>gi|399521380|ref|ZP_10762120.1| DNA mismatch repair protein mutS [Pseudomonas pseudoalcaligenes
CECT 5344]
gi|399110618|emb|CCH38680.1| DNA mismatch repair protein mutS [Pseudomonas pseudoalcaligenes
CECT 5344]
Length = 855
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 176/570 (30%), Positives = 281/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D +
Sbjct: 266 LDGASRRNLELDINL------AGGRDNTLQSVMDRCQTAMASRLLGRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQDAIARLLDGYR-FETLQPQLKEI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + L + S+ + A + R +ID
Sbjct: 363 --DLARLRDALAALPELQLAMTSLDTPHLQQLASSISTYPELADLLARA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + + +L + +E L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKSGYDAELDELQAMSENAGQFLMDLEAREKERTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + P+ +I+ T EL + SA R ++ +
Sbjct: 471 GYFIELPTKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYDE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F + + ID GRHP
Sbjct: 530 LLERLIGHLAPLQDSAAALAELDVLSNLAERALNLD----LNRPRFVDEPCMRIDQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLDLDDNRRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAAACE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N SERSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASERSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AWS EHL L+A+T+FA+H L+ L P V +H N R+ F ++ GP
Sbjct: 706 LAWSAAEHLARLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVQPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P TVI AR +R+
Sbjct: 766 SQ-SYGLAVAQLAGVPGTVISRAREHLARL 794
>gi|291550404|emb|CBL26666.1| DNA mismatch repair protein MutS [Ruminococcus torques L2-14]
Length = 888
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 183/590 (31%), Positives = 297/590 (50%), Gaps = 61/590 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+++ RNLE+ E L K+ SL +L T+T G R LR N+ QPL D
Sbjct: 272 MLIDSSTRRNLELCETLRE-----KQKRGSLLWVLDKTRTAMGARTLRKNVEQPLIDKSE 326
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAK 117
IN RLD ++EL + + ++L + +R++ + P+ +T+
Sbjct: 327 INRRLDAVEELKNQAIAREEIREYLSPV-YDLERLITKITYGSANPRDLTA--------- 376
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
K +L+ LP + +L+D Q+ LL IY + E + + + I E
Sbjct: 377 -----------FKGSLEMLPPIRYILQDLQAPLLKEIYEDLDALEDLCEL---VTKAIRE 422
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D P +A ++ I+ G + +D RR+ D + + L N RE+ + NLK+
Sbjct: 423 D------PPLA-MKEGNIIRDGYNEEVDKLRRAKSDGKDWLAKLENDEREKTGIKNLKIK 475
Query: 238 FNNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+N G+YL + +KD+ +P + + N T EL L A + Y
Sbjct: 476 YNKVFGYYLEVTNSYKDL---VPDYYTRKQTLANAERYITPELKELEDMILGAEDKLYAL 532
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ + I V + A+ + LD +F+ + Y RP E G L
Sbjct: 533 EYELYSEVRETIAGQVERIQQTAKAVAALD----AFSSLALVAERNNYVRPKINEKGILD 588
Query: 356 IDGGRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIG 412
I GRHP++E I ND FI N+ ++ + + + I+TGPNM+GKSTY++Q LI ++AQIG
Sbjct: 589 IKEGRHPVVERMIPNDMFIANDTYLDDKKHRISIITGPNMAGKSTYMRQTALIALMAQIG 648
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I + DRIFTR+G D+L S STFM EM E A +++N + +SL+++DE+GR
Sbjct: 649 SFVPAESANICLSDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGR 708
Query: 473 ATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
TS+ DG +IAW+ E++ L A T+FA+H L+EL NV ++ + ++
Sbjct: 709 GTSTFDGLSIAWAVVEYISDSKLLGAKTLFATHYHELTELEGKIDNVN--NYCIAVKEKG 766
Query: 530 LDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
D F +K G YG+ +A++AG+P VI A+ I ++ +++
Sbjct: 767 DDIVFLRKIVKGGADK--SYGIQVAKLAGVPDLVISRAKEIVEELSDEDI 814
>gi|448566814|ref|ZP_21637069.1| DNA mismatch repair protein MutS [Haloferax prahovense DSM 18310]
gi|445713403|gb|ELZ65180.1| DNA mismatch repair protein MutS [Haloferax prahovense DSM 18310]
Length = 914
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 177/586 (30%), Positives = 293/586 (50%), Gaps = 74/586 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ E SA G++ LF +L T G R L A L +PL D +
Sbjct: 287 LQLDATAIRSLELFES-RSARAGST-----LFSVLDETACALGRRRLEAWLRRPLVDRDE 340
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD +D L + L + L + +++ ++V + +
Sbjct: 341 IEARLDAVDALCDDALARTDLREHLSS------------VYDLERLVARV------SRER 382
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P + + L S LLA++ S+ E E +R +G+ + D
Sbjct: 383 ADARDLRSLKTTLDRVPEVREALAGTDSDLLADLRDSLDELED---VRDLVGDAVVSDPP 439
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G D LD R + E V NL + +E + +L++ +N
Sbjct: 440 Q-------EITEGGVIADGFDAELDDIRGTAEAGREWVSNLEAREQERTGIDSLEVGYNQ 492
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE---- 291
G+Y+ + + ++ ++P + Q +K+ + L E L +++ A E
Sbjct: 493 VHGYYIEVTNPNLD-RVPDDYRRRQTLKNSERFYTPELKEREDEILRASDRADALEYDLF 551
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
C +R ++ E A+ DA+ D+ VL LA+V D Y RP
Sbjct: 552 CEVRADVATESARIQAVADAL-ADLDVLRTLADVAVAND-----------------YARP 593
Query: 347 HF----TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQV 402
F +G + ID GRHP++E ++F+PN + ++ +VTGPNMSGKSTY++QV
Sbjct: 594 EFRAGGVGDGGIHIDAGRHPVVERAQDEFVPNPADLPRG-SVALVTGPNMSGKSTYMRQV 652
Query: 403 CLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSER 462
L+ +LAQ+G +VPA + + V+DR+FTR+G D++ STFM EM E ++ N +
Sbjct: 653 ALVCVLAQVGSFVPAESARLPVLDRVFTRIGASDDIAGGQSTFMREMSELTEILHNATGD 712
Query: 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHF 521
SL+++DE+GR TS++DG AIA + E L + A T+FA+H +L++ A V HF
Sbjct: 713 SLVLLDEVGRGTSTADGLAIARAATEFLHDEVGATTLFATHYHDLTDAADDREGVFNHHF 772
Query: 522 YVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
R+ + F + DGP YG+ +A++AG+P++V+E AR +
Sbjct: 773 TAARRDGEVTFLHSVADGPSS-SSYGVEVAQLAGVPASVVERARDL 817
>gi|448617252|ref|ZP_21665907.1| DNA mismatch repair protein MutS [Haloferax mediterranei ATCC
33500]
gi|445748601|gb|EMA00048.1| DNA mismatch repair protein MutS [Haloferax mediterranei ATCC
33500]
Length = 919
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 177/592 (29%), Positives = 294/592 (49%), Gaps = 55/592 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++++LE+ + ++ +LF +L T G R L A L +PL D E
Sbjct: 280 LQLDATAIQSLELFDSR------STRAGSTLFSVLDETACALGRRRLEAWLRRPLVDREA 333
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD +D L + L L + +++ ++V + +
Sbjct: 334 IEARLDAVDALCDDALSRADLRDHLSS------------VYDLERLVARV------SRER 375
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P + + L + S LL+ + S+ E E +R +G I D
Sbjct: 376 ANARDLRSLKTTLDRVPEIRESLAETDSALLSKLRDSLDELE---CVRDLVGRAIVTDPP 432
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G + LD R + D E V NL + RE + +L++ +N
Sbjct: 433 Q-------EITEGGVIADGFNAELDDLRGTAEDGREWVSNLEVQERERTGIDSLEVGYNQ 485
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE---- 291
G+Y+ + + ++ ++P ++ Q +K+ + L E L +++ A E
Sbjct: 486 VHGYYIEVTNPNLD-RVPDDYVRRQTLKNSERFYTPELKEREDEILRAADRADALEYDLF 544
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
C +R ++ E A+ D + D+ VL LA+V D F H S + +
Sbjct: 545 CEVRADVATESERIQAVADVL-ADLDVLRTLADVAVANDYARPEF-HGGSAGGGENTSNA 602
Query: 347 HFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406
F G + ID GRHP++E +F+PN I + + ++TGPNMSGKSTY++QV L+
Sbjct: 603 KFDGEG-IEIDAGRHPVVERAQGEFVPNPASIPQG-GVALITGPNMSGKSTYMRQVALVC 660
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
ILAQ+G +VPA + + VVDR+FTR+G D++ STFM EM E ++ N ++ SL++
Sbjct: 661 ILAQMGSFVPADAARLPVVDRVFTRIGASDDIAGGQSTFMREMSELTEILHNATDDSLVL 720
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
+DE+GR TS++DG AIA + E + + A T+FA+H +L++ A V LHF
Sbjct: 721 LDEVGRGTSTADGLAIARAATEFVHDEVGAMTLFATHYHDLTDAAADRDGVFNLHFTATQ 780
Query: 526 RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
R+ + F + DGP YG+ +A +AG+PSTV++ AR++ E +
Sbjct: 781 RDGEVTFLHSVADGPSS-SSYGVEVAHLAGVPSTVVDRARNLVEEDVSNEAE 831
>gi|77164436|ref|YP_342961.1| DNA mismatch repair protein MutS [Nitrosococcus oceani ATCC 19707]
gi|115299211|sp|Q3JCL5.1|MUTS_NITOC RecName: Full=DNA mismatch repair protein MutS
gi|76882750|gb|ABA57431.1| DNA mismatch repair protein MutS [Nitrosococcus oceani ATCC 19707]
Length = 863
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 195/636 (30%), Positives = 307/636 (48%), Gaps = 70/636 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++ RNLE+ E +L G S + +L +L T T G+RLLR L +PL+D +
Sbjct: 270 LDPSTRRNLELEE----SLSGDSGRN-TLIAVLDHTATAMGSRLLRRYLHRPLRDQTLLK 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPK---ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R L L+ GLS L+ + + +R+L + +++ D+ +++
Sbjct: 325 QRQQALATLLEG-----GLSDVLQTLLRGIGDIERILSRVALR----SARPRDLVQFRQA 375
Query: 120 QTLISSI--ILLKTALDALPLLAKVLKDAQSF--LLANIYRSVCENEKYASIRKRIGEVI 175
L+ I LL+ D+L LL + +D F L + R++CEN
Sbjct: 376 LGLLPKIQESLLQLNRDSL-LLQSLQEDLGPFPNLHELLQRAICENP------------- 421
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
P + R A+ G D LD R + + + L + RE K+P LK
Sbjct: 422 ---------PVLIRDGGVIAL--GFDSELDELRHLSGNAGQFLVKLEQRERERTKIPTLK 470
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +N G+YL I P + G + T EL + SA R
Sbjct: 471 VGYNKVHGYYLEITRAQAHQAPPDYIRRQTLKGAERYI-TPELKGFEDQVLSARERALAR 529
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ E L++ E + L A L LD++ N A T Y P ++ +
Sbjct: 530 EKALYEELLEQFMEPLPALRACANALAELDVLHN-LAERAKTL---EYVAPLLSDQPGIF 585
Query: 356 IDGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+ GRHP++E ++ + F+PN++ + EA M+I+TGPNM GKSTY++Q LIV+LA IG +
Sbjct: 586 IERGRHPVVEQTLEDPFVPNDLTLHEARRMLIITGPNMGGKSTYMRQTALIVLLAHIGSF 645
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L STFM EM ETA ++ N +E SL+++DE+GR T
Sbjct: 646 VPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTETANILHNATEHSLVLLDEVGRGT 705
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ HL + +++ T+FA+H L+ L P V LH + F
Sbjct: 706 STFDGLSLAWAVVSHLANKVRSLTLFATHYFELTTLPECLPGVVNLHLTATEHKEHIVFL 765
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK------ 587
+K+GP YGL +A +AG+P +I AR +++ +E N Q
Sbjct: 766 HAVKEGPASQ-SYGLQVAALAGVPQEIIAQAR--------QQLMELENNTWQKSINGGGP 816
Query: 588 QIQMLYHAAQR--LICLKYSNQDEESIRHALQNLKE 621
Q+ +L A + L+ + DE + R AL+ L E
Sbjct: 817 QLDLLAPPADHPAVQILQDLDPDELTPRQALEKLYE 852
>gi|71282195|ref|YP_270792.1| DNA mismatch repair protein MutS [Colwellia psychrerythraea 34H]
gi|90109844|sp|Q47WN0.1|MUTS_COLP3 RecName: Full=DNA mismatch repair protein MutS
gi|71147935|gb|AAZ28408.1| DNA mismatch repair protein MutS [Colwellia psychrerythraea 34H]
Length = 872
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 186/632 (29%), Positives = 316/632 (50%), Gaps = 51/632 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + LH L T L +L + T G+RLL+ L PL+D+ +N
Sbjct: 281 LDAATRRNLELTQNLHGGLDNT------LAAILDKSSTPMGSRLLKRWLHFPLRDLTVLN 334
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + ++++ + Q L K + +R++ + D A+
Sbjct: 335 NRQNTVSDIIALD--LIAPIQPLLKGLGDIERIVSRIALGSARPR------DFAR----- 381
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ AL LP L LK + N ++ + + + + ++HA
Sbjct: 382 ------LRHALQQLPELQNELKSGLTESPTNYLATIAQQSQPMPQLEGL-------LVHA 428
Query: 183 RV---PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V P + R A G + LD+ R +E + L + +E + +LK+ +N
Sbjct: 429 IVENPPVLIRDGGVIA--PGYNNELDVLRDLSDGATEFLAQLEQREKERTGIHSLKVGYN 486
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + + +P +I+ NN T EL + SA + +
Sbjct: 487 RVHGFFIEM-SRTAAVDVPDDYIRRQTLKNNERFITEELKQHEEKVLSAQSKFLALEKSL 545
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L D + D++ L L++ + LD++ ++ Y +P E ++ID G
Sbjct: 546 YQELFDKVLPDLAQLQQLSQAIAELDVLTTFAERALALN----YVKPSLVEEPGISIDAG 601
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RH ++E + ND FI N + ++E M+I+TGPNM GKSTY++Q LIV+LA IGCYVPA
Sbjct: 602 RHVVVEQMTNDAFIANPVLLTEQRKMLIITGPNMGGKSTYMRQTALIVLLAHIGCYVPAD 661
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+TI +VDRIFTR+G D+L S STFM EM ETA ++ N +++SL+++DE+GR TS+ D
Sbjct: 662 NATIGLVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATDKSLVLLDEIGRGTSTYD 721
Query: 479 GFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L L KA+T+FA+H L+ LA + +H + ++ + F ++
Sbjct: 722 GLSLAWACAEMLALKTKAFTLFATHYFELTLLAGQISTLANVHLDAMEHDDNIVFMHAVQ 781
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQ 597
+G +GL +A++AG+P TVI+ A+ S + +++ + +Q + L A +
Sbjct: 782 EGAAS-KSFGLQVAQLAGVPKTVIKRAKQRLSELEQQQTPSILPAPIQNDAFEQLSFAPE 840
Query: 598 R---LICLKYSNQDEESIRHALQ---NLKESF 623
+ L ++ +E S R AL +LKE
Sbjct: 841 EHSVVTTLIDTDINELSPRQALDLLFSLKEQL 872
>gi|254433851|ref|ZP_05047359.1| DNA mismatch repair protein MutS [Nitrosococcus oceani AFC27]
gi|207090184|gb|EDZ67455.1| DNA mismatch repair protein MutS [Nitrosococcus oceani AFC27]
Length = 851
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 195/636 (30%), Positives = 306/636 (48%), Gaps = 70/636 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++ RNLE L +L G S + +L +L T T G+RLLR L +PL+D +
Sbjct: 258 LDPSTRRNLE----LEESLSGDSGRN-TLIAVLDHTATAMGSRLLRRYLHRPLRDQTLLK 312
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPK---ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R L L+ GLS L+ + + +R+L + +++ D+ +++
Sbjct: 313 QRQQALATLLEG-----GLSDVLQTLLRGIGDIERILSRVALR----SARPRDLVQFRQA 363
Query: 120 QTLISSI--ILLKTALDALPLLAKVLKDAQSF--LLANIYRSVCENEKYASIRKRIGEVI 175
L+ I LL+ D+L LL + +D F L + R++CEN
Sbjct: 364 LGLLPKIQESLLQLNRDSL-LLQSLQEDLGPFPNLHELLQRAICENP------------- 409
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
P + R A+ G D LD R + + + L + RE K+P LK
Sbjct: 410 ---------PVLIRDGGVIAL--GFDSELDELRHLSGNAGQFLVKLEQRERERTKIPTLK 458
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +N G+YL I P + G + T EL + SA R
Sbjct: 459 VGYNKVHGYYLEITRAQAHQAPPDYIRRQTLKGAERYI-TPELKGFEDQVLSARERALAR 517
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ E L++ E + L A L LD++ N A T Y P ++ +
Sbjct: 518 EKALYEELLEQFMEPLPALRACANALAELDVLHN-LAERAKTL---EYVAPLLSDQPGIF 573
Query: 356 IDGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+ GRHP++E ++ + F+PN++ + EA M+I+TGPNM GKSTY++Q LIV+LA IG +
Sbjct: 574 IERGRHPVVEQTLEDPFVPNDLTLHEARRMLIITGPNMGGKSTYMRQTALIVLLAHIGSF 633
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L STFM EM ETA ++ N +E SL+++DE+GR T
Sbjct: 634 VPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTETANILHNATEHSLVLLDEVGRGT 693
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ HL + +++ T+FA+H L+ L P V LH + F
Sbjct: 694 STFDGLSLAWAVVSHLANKVRSLTLFATHYFELTTLPECLPGVVNLHLTATEHKEHIVFL 753
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK------ 587
+K+GP YGL +A +AG+P +I AR +++ +E N Q
Sbjct: 754 HAVKEGPASQ-SYGLQVAALAGVPQEIIAQAR--------QQLMELENNTWQKSINGGGP 804
Query: 588 QIQMLYHAAQR--LICLKYSNQDEESIRHALQNLKE 621
Q+ +L A + L+ + DE + R AL+ L E
Sbjct: 805 QLDLLAPPADHPAVQILQDLDPDELTPRQALEKLYE 840
>gi|210621373|ref|ZP_03292609.1| hypothetical protein CLOHIR_00552 [Clostridium hiranonis DSM 13275]
gi|210154797|gb|EEA85803.1| hypothetical protein CLOHIR_00552 [Clostridium hiranonis DSM 13275]
Length = 956
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 179/592 (30%), Positives = 305/592 (51%), Gaps = 55/592 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + NLE+ + + KK SL H+L T T G RLLR + QPL + E
Sbjct: 265 MVLDMFTRTNLELTQTIRGG-----KKKGSLLHVLDRTSTAMGGRLLRKYVEQPLINKEK 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ ++E+ + L L + L+K + +R+ F+ KVT K L
Sbjct: 320 IEYRLNIIEEINDDYILKEDLIEILKKI-YDIERICGKIAFE--KVTPKEL--------- 367
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I LK +++ LPLL + ++++ +L S+ + I + I + I ED
Sbjct: 368 ------INLKHSIEKLPLLKETVENSSCVILKEYINSM---DTLEDIYQLIEDSIKED-- 416
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK G + LD R + + + ++ K +E + +LK+ FN
Sbjct: 417 ----PAIT-IKDGNIIKSGYNNELDELRDISKNGANIIKDIEAKEKERTGVKSLKIGFNK 471
Query: 241 RQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYI 294
G+Y+ I ++ Q + ++I+ N T EL LN K A E I
Sbjct: 472 VFGYYIEITKTNLAQANIDESYIRKQTLSNAERFITPELKEIEEKILNAEEKIKAIEYEI 531
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
TEI A+ ++++ + +A ++ +D+ +A T + Y +P+ L
Sbjct: 532 FTEIR-----SAVYKNINRIQEVAHIVANVDV----YAALAETASQNGYVKPNINNENRL 582
Query: 355 AIDGGRHPILESIHN--DFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQI 411
I GRHP++E+I +F+PN+ ++ N + I+TGPNMSGKSTY++Q +I ++A I
Sbjct: 583 EIKNGRHPVVENIVGIENFVPNDTYLKTGENTINIITGPNMSGKSTYMRQTAIIALMAHI 642
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA ++ I ++DRIFTR+G D+L STFM EM E + +++N +++SL+++DE+G
Sbjct: 643 GSFVPAEYADIPIMDRIFTRVGASDDLSQGQSTFMVEMNEVSMILKNATDKSLVILDEIG 702
Query: 472 RATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS+ DG ++AWS E++ ++K T+FA+H L++L + VK ++ + ++ +
Sbjct: 703 RGTSTYDGISLAWSIVEYIQKNIKCKTLFATHYHELTDLEDEFDEVK--NYSIGVKEDGN 760
Query: 531 DFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
D F K P+ YG+ +A++A LP VI + I S + K V M +
Sbjct: 761 DVIFLRKIIPQAADKSYGIYVAKLAKLPDEVINRSSEILSDLEKNHVSNMSV 812
>gi|427710607|ref|YP_007052984.1| DNA mismatch repair protein MutS [Nostoc sp. PCC 7107]
gi|427363112|gb|AFY45834.1| DNA mismatch repair protein MutS [Nostoc sp. PCC 7107]
Length = 855
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 190/589 (32%), Positives = 295/589 (50%), Gaps = 67/589 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID + RNLEI + + + SL L T T G+R LR LLQPL D++ I
Sbjct: 304 IDHQTRRNLEITQTVRDGTF-----HGSLLWALDRTSTAMGSRALRRWLLQPLLDLKGIR 358
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+R D + EL N L L LR+ + +++T + A
Sbjct: 359 SRQDTIQELKENTPLRQDLRYLLRQI------------YDLERLTGR------ASSGTAN 400
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+I L +L LP LA+V+ DA S L + +K + + + + I V+ A
Sbjct: 401 ARDLIALADSLSRLPELARVVADAGSPFLKAL-------QKVPPVLEELAQQIQAHVVEA 453
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + ++ I+ GI+ LLD + + + + NL R +P LK+ FN
Sbjct: 454 --PPI-HLKEGGLIRPGINVLLDERKATVEADHQWIANLEVDERTRTGIPTLKVGFNETF 510
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY--------- 293
G+Y+SI ++P+ +I+ N T EL R SA + Y
Sbjct: 511 GYYISISRTKAD-QVPANYIRKQTLKNEERYITPELKEREARILSARDDLYKLEYEIFVA 569
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLC-LLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
+R E+ +A +AIR+ +S A+VLC L ++ V Y RP
Sbjct: 570 LREEVGEQA--EAIRQ-LSRAVAAADVLCGLAELAVQQG-----------YFRPEMISGR 615
Query: 353 PLAIDGGRHPILES--IHNDFIPN--NIFISEAA---NMVIVTGPNMSGKSTYLQQVCLI 405
L I GRHP++E F+PN N+ EA +++I+TGPN SGKS YL+QV LI
Sbjct: 616 ELEIVDGRHPVVEQSLPAGFFVPNSTNLGSGEATAFPDLIILTGPNASGKSCYLRQVGLI 675
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
++AQIG +VP + + + DRIFTR+G VD+L + STFM EM ETA ++ + + RSL+
Sbjct: 676 QLMAQIGSFVPVKSAKLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATSRSLV 735
Query: 466 VMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVV 524
++DE+GR T++ DG +IAW+ E+L + +++ TIFA+H L+ELA++ PNV V
Sbjct: 736 LLDEIGRGTATFDGLSIAWAVAEYLGMEIRSRTIFATHYHELNELASMLPNVANYQVTVK 795
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++ F Q++ G YG+ +AGLP+ VI+ A+ + +I K
Sbjct: 796 ELPDQIIFLHQVQPGGAD-KSYGIEAGRLAGLPAVVIQRAKQVMGQIEK 843
>gi|354557463|ref|ZP_08976721.1| DNA mismatch repair protein mutS [Desulfitobacterium
metallireducens DSM 15288]
gi|353550257|gb|EHC19694.1| DNA mismatch repair protein mutS [Desulfitobacterium
metallireducens DSM 15288]
Length = 849
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 176/572 (30%), Positives = 293/572 (51%), Gaps = 45/572 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLE+ EPL KK +L +L TKT G RLLR + QPL +
Sbjct: 250 MILDQWTRRNLELTEPLRG-----QGKKGTLLSVLDFTKTAFGGRLLRRWIEQPLLSKQE 304
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ + +L + L L+QFL + +R++ F T+ D
Sbjct: 305 IEHRLNIISDLTEDSFLRGDLAQFLTGI-YDLERLMGKVSFG----TAHARD-------- 351
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK L LP + +S L A+ S+ + + +GE + E+ L
Sbjct: 352 -----LLALKQTLSTLPKI-------RSSLFASHSESLKNYLAHLTGLDELGEEL-ENAL 398
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P + +K G +D R + + V L + +E + +LK+ +N
Sbjct: 399 NIEAPLSLKEGNL--LKDGYSPEIDQLRGTSSGGKDWVAQLEAQEKERTGIRSLKVGYNK 456
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEIC 299
G+Y+ + H + Q +P +I+ N T EL + A + + ++
Sbjct: 457 VFGYYIEVTHANAQ-LVPPEYIRKQTLANAERFITPELKEYEQKILGAEDKLIQLEYQLF 515
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
LE + + +R + + A L +D+ V+ I Y RP T+ G + I G
Sbjct: 516 LE-IRETVRRHIPQIMDAAHALAEIDVFVSLAEVAIR----HHYVRPEITQGGKIQILEG 570
Query: 360 RHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHP++E++ + F+PN+ +S + ++ ++TGPNM+GKSTY++QV LIV++AQIG Y+PA
Sbjct: 571 RHPVVENMLENGTFVPNDTLLSRSKHLALITGPNMAGKSTYMRQVALIVLMAQIGSYIPA 630
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++I +VD IFTR+G D+L S STFM EM+E A+++ +V+E SL+++DE+GR T++
Sbjct: 631 EKASISIVDHIFTRVGASDDLASGQSTFMVEMREVAYILHHVTEHSLVILDEVGRGTATF 690
Query: 478 DGFAIAWSCCEHLLS--LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG +IAW+ E+L +K T+FA+H L+ L P + LH V + F +
Sbjct: 691 DGLSIAWAVTEYLADQKVKPKTLFATHYHELTSLEESLPGIFNLHVGVREHGEDIIFLHK 750
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ G R YG+ +A++AGLP+ +++ AR I
Sbjct: 751 IISG-RADRSYGIQVAKLAGLPAPLLQRARII 781
>gi|443469639|ref|ZP_21059793.1| DNA mismatch repair protein MutS [Pseudomonas pseudoalcaligenes
KF707]
gi|442899091|gb|ELS25622.1| DNA mismatch repair protein MutS [Pseudomonas pseudoalcaligenes
KF707]
Length = 857
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 178/570 (31%), Positives = 287/570 (50%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L + + +L ++ +T G+RLL L +PL+D +
Sbjct: 268 LDAATRRNLELDVNL------SGGRDNTLQSVVDRCQTAMGSRLLSRWLNRPLRDRAVLE 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + +D L+ + F L L++ + +RVL + NA+
Sbjct: 322 ARQNAIDCLLDRYR-FENLQPQLKEI-GDVERVLARIGLR------------NARPR--- 364
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + L + S+ + A + R +ID
Sbjct: 365 --DLARLRDALAALPQLQAAMTELDVPHLQTLAGSIRTYPELADLLSRA--IIDNP---- 416
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 417 --PAVIRDGGV--IKTGYDPELDELQALSENAGQYLMDLEAREKARTGLPNLKVGYNRIH 472
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ +P + + P+ +I+ T EL + + SA R ++ +
Sbjct: 473 GYYIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKLLYDE 531
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L+D + E ++ L A L LD++ N ++ RP F E + I+ GRHP
Sbjct: 532 LLDLLIEQLAPLQDTAAALAELDVLSNFAERALNLD----LNRPRFVEEPCMRINQGRHP 587
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LA IGC+VPA
Sbjct: 588 VVEQVLDTPFVANDLNLDDATRMLVITGPNMGGKSTYMRQTALIVLLAHIGCFVPAAGCE 647
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S SL++MDE+GR TS+ DG +
Sbjct: 648 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASSNSLVLMDEVGRGTSTFDGLS 707
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ EHL L+A+T+FA+H L+ L P V +H N+R+ F + GP
Sbjct: 708 LAWAAAEHLARLRAFTLFATHYFELTVLPESEPVVANVHLNATEHNDRIVFLHHVLPGPA 767
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI+ AR +R+
Sbjct: 768 SQ-SYGLAVAQLAGVPGAVIQRAREHLARL 796
>gi|333907024|ref|YP_004480610.1| DNA mismatch repair protein mutS [Marinomonas posidonica
IVIA-Po-181]
gi|333477030|gb|AEF53691.1| DNA mismatch repair protein mutS [Marinomonas posidonica
IVIA-Po-181]
Length = 877
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 178/569 (31%), Positives = 292/569 (51%), Gaps = 51/569 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA + RNLEI L GTSN +L +L T G+RLL+ L P++D+ I
Sbjct: 272 IDAATRRNLEIDINLTG---GTSN---TLSQVLDQCATPMGSRLLKRWLHTPVRDLNEIQ 325
Query: 63 TRLDCLDELMSNEQLFFG-LSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQT 121
+R + EL S Q ++ L+ L+K + +R+L + +
Sbjct: 326 SRQSAVAELKS--QFYYQPLNGSLKKV-GDLERILSRVALRSARP--------------- 367
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANI-YRSVCENEKYASIRKRIGEVIDEDVL 180
++ L+ AL+ +PL+ + L + S L+ + R + + E ++ K + E
Sbjct: 368 --RDLLRLRFALEMIPLINQDLGNVNSARLSQLNQRIIAQPEITETLTKALVE------- 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R FA G D LD + ++ + + +E + +LK+ FN
Sbjct: 419 --NPPSVVRDGGIFAT--GYDPELDELLSLSTNATDFLAEMERSEKERTGISSLKVGFNR 474
Query: 241 RQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+Y+ I H + + P +I+ N T EL + + SA + R +
Sbjct: 475 VHGYYIEISRLHSE---QAPVEYIRRQTLKNAERFITPELKTFEDKALSAKSKALAREKE 531
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E L+D + + + L ++ L LD ++N+FA + T+P + I
Sbjct: 532 LYETLLDQLNQHLGELQTASQALAQLD-VLNNFAERADQLNL---TQPELHTGRGIDITA 587
Query: 359 GRHPILES-IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++ES I F+PN++ +++ +++++TGPNM GKSTY++Q+ LI +LA GC+VPA
Sbjct: 588 GRHPVVESVISEPFVPNDLTLNDQRSLLMITGPNMGGKSTYMRQIALITLLAHTGCFVPA 647
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++I VVDRIFTRMG+ D+L STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 648 QAASIAVVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNATQNSLVLMDEVGRGTSTF 707
Query: 478 DGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+ EHL +LK Y +FA+H L+ LA + +H + + F ++
Sbjct: 708 DGLSLAWAAVEHLAQTLKCYVLFATHYFELTGLAEQLDTAENVHLTATEYEDEIVFLHKV 767
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
GP YGL +A++AG+P VI+ A+
Sbjct: 768 HSGPAS-QSYGLQVAQLAGVPKNVIQQAK 795
>gi|189030712|sp|A9KG24.1|MUTS_COXBN RecName: Full=DNA mismatch repair protein MutS
Length = 859
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 178/577 (30%), Positives = 288/577 (49%), Gaps = 64/577 (11%)
Query: 3 IDATSVRNLEII-----EPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKD 57
IDA + RNLE+I E +HS W +L T T G+RLLR + +PL+D
Sbjct: 274 IDANTRRNLELITNLQGEEVHSLAW-----------LLDHTATPMGSRLLRRWINRPLRD 322
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
+ R + + L+ + + + LR + +R++ + +
Sbjct: 323 QILLQQRQNAVSTLLEKRN-YSEIYENLRHI-GDLERIVARIALRSARP----------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ L+ AL LP L + L + + N++ I+ +G + DE
Sbjct: 370 ------RDLMQLRQALGVLPTLHQQLTN------------LPLNKQLQEIKNNLG-LFDE 410
Query: 178 ------DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL 231
+ P V R A G D LD R ++ + + +L + RE K+
Sbjct: 411 LFRLLQKAIIENPPIVIRDGGVIA--DGYDAPLDELRNMSTNSHQFLIDLEQQERERTKI 468
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
LK+ +N G+Y+ I + + P+ +I+ N T EL + S+
Sbjct: 469 NTLKVGYNRIHGYYIEISRAQAK-QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSR 527
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
R + E L+D + E + L A + LD ++N+ A T + P F +
Sbjct: 528 ALAREKELYEQLLDTLIEKLIPLQQCASAIANLD-VLNTLAERADTL---NFNAPQFCDY 583
Query: 352 GPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I+ GRHPI+E++ D F+PN+ + E M+I+TGPNM GKSTY++Q LI +LA
Sbjct: 584 PIIKIEAGRHPIVENVMTDPFMPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAY 643
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + + +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+
Sbjct: 644 IGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEV 703
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++A++C +L + LKA+ +FA+H L+ LA+ P VK +H V +
Sbjct: 704 GRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHLDAVEHEEK 763
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+ F L++GP + YGL +A++AG+P +VI+ AR
Sbjct: 764 IIFLHALREGPAN-KSYGLQVAQLAGIPRSVIQHARQ 799
>gi|170076810|ref|YP_001733448.1| DNA mismatch repair protein MutS [Synechococcus sp. PCC 7002]
gi|169884479|gb|ACA98192.1| DNA mismatch repair protein MutS [Synechococcus sp. PCC 7002]
Length = 881
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 184/583 (31%), Positives = 291/583 (49%), Gaps = 52/583 (8%)
Query: 1 MNIDATSVRNLEIIEPLH-SALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
+ +D + RNLEI + + + +G SL L T T G R LR LLQPL D +
Sbjct: 305 LQLDHQTRRNLEITQTVRDGSFYG------SLLWALDVTCTNMGGRALRRWLLQPLLDPK 358
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKK 118
I RLD + EL+ N L + Q L++ + +++ ++ NA+
Sbjct: 359 AIAKRLDSVAELVENTNLRQDIRQLLKQI------------YDLERIAGRIGSGSANAR- 405
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+ L +L L LA++ + +S L + E E + + ++D
Sbjct: 406 ------DLYALAESLTKLTYLAELATEGRSPYLQAVKDFPPELEALG--QHVLQYLVDSP 457
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+H + + I+ G+D LD RRS + E + NL RE + LK+ +
Sbjct: 458 PIHIK--------EGGLIRDGVDENLDFLRRSQVEDREWLANLEVTERERTGVSKLKVGY 509
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTE 297
N G+Y+S+P K P +++ N T EL R +A + C + E
Sbjct: 510 NKTFGYYISLPRSQAD-KAPDEYLRKQTLANEERYITPELKERESRILTAKDDICSLEYE 568
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
I L + E + A+ + LD ++ SFA T + Y RP T L I+
Sbjct: 569 I-FTTLRAEVAEHTDQIRTTAKAIAALD-VLTSFAETAVYQ---GYCRPEITTEKTLEIE 623
Query: 358 GGRHPILESI--HNDFIPNNIFISEAAN----MVIVTGPNMSGKSTYLQQVCLIVILAQI 411
GRHP++E F+PN+ ++ N ++I+TGPN SGKS YL+Q LI ++AQ+
Sbjct: 624 AGRHPVVEKSLGMGLFVPNSTYLGRTQNSYPDLIILTGPNASGKSCYLRQTGLIQLMAQV 683
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + I + DRIFTR+G VD+L + STFM EM ETA ++ + +E+SL+++DE+G
Sbjct: 684 GSFVPAQSAVIPICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATEKSLVLIDEIG 743
Query: 472 RATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R T++ DG +IAWS E+L + +KA TIFA+H L+ELA++ NV V +
Sbjct: 744 RGTATFDGLSIAWSVSEYLATEIKAKTIFATHYHELNELASLLENVANYQVTVQEMPEEI 803
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
F Q++ G YG+ +AGLP +VI+ A+ + ++I K
Sbjct: 804 IFLHQVRPGGADR-SYGIEAGRLAGLPKSVIQRAKQVMTQIEK 845
>gi|160880513|ref|YP_001559481.1| DNA mismatch repair protein MutS [Clostridium phytofermentans ISDg]
gi|189030711|sp|A9KL10.1|MUTS_CLOPH RecName: Full=DNA mismatch repair protein MutS
gi|160429179|gb|ABX42742.1| DNA mismatch repair protein MutS [Clostridium phytofermentans ISDg]
Length = 932
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 176/583 (30%), Positives = 298/583 (51%), Gaps = 47/583 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID++S RNLE+ E L K+ SL +L TKT G R+LR+ + QPL ++
Sbjct: 267 MVIDSSSRRNLELTETLRE-----KQKRGSLLWVLDKTKTAMGARMLRSFVEQPLITMDE 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ R D + EL N +E R ++ + +++ K+ + KS
Sbjct: 322 ISARYDAISELNDN------------VITREEIREYLNYIYDLERLMGKI-----SYKSA 364
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I ++L LP + +L +S LL I+ + + +ID +
Sbjct: 365 NP-RDLIAFASSLSMLPHIKYLLSTCESALLKQIHEEM-------DALDDLQNLIDRSI- 415
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A P + ++ IK G +D R++ + + L K +E+ + NLK+ +N
Sbjct: 416 -AEEPPIG-IKEGGIIKEGFHTEVDTLRKAKTEGKVWLAELEAKEKEQTGIKNLKVKYNR 473
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+YL + + +P +I+ N +T EL L + +A +
Sbjct: 474 VFGYYLEVTNS-YANLVPENWIRKQTLSNAERYTTPELKELEDKILNAEDRLFSLEYDLF 532
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ D I E+V + A+ + +D +FA +++ RP NG + I GR
Sbjct: 533 AEIRDQIAEEVKRIQKTAKAVANID----AFASLAYVAERNQFIRPELNTNGTIDIKEGR 588
Query: 361 HPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E I ND F+ N+ ++ A + I+TGPNM+GKSTY++Q LIV++AQ+G +VPA
Sbjct: 589 HPVVEQMIPNDMFVSNDTYLDNAEKRISIITGPNMAGKSTYMRQTALIVLMAQVGSFVPA 648
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++ I +VDRIFTR+G D+L S STFM EM E A +++N ++ SL+++DE+GR TS+
Sbjct: 649 SYANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATKNSLLILDEIGRGTSTF 708
Query: 478 DGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG +IAW+ EH+ + L A T+FA+H L+EL V ++ + ++ D F
Sbjct: 709 DGLSIAWAVIEHISNTSMLGAKTLFATHYHELTELEGKISGVN--NYCIAVKEQGEDIVF 766
Query: 535 QLK-DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
K G YG+ +A++AG+P++V+ AR I ++++ ++
Sbjct: 767 LRKIIGGGADKSYGIQVAKLAGVPNSVLVRAREIVDQLSENDI 809
>gi|433432036|ref|ZP_20407731.1| DNA mismatch repair protein MutS [Haloferax sp. BAB2207]
gi|432193691|gb|ELK50391.1| DNA mismatch repair protein MutS [Haloferax sp. BAB2207]
Length = 922
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 176/587 (29%), Positives = 294/587 (50%), Gaps = 75/587 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ E SA G++ LF +L T G R L A L +PL D +
Sbjct: 288 LQLDATAIRSLELFES-RSARAGST-----LFSVLDETACALGRRRLEAWLRRPLVDRDR 341
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++ L + L L + +++ ++V + +
Sbjct: 342 IEARLDAVEALCDDALARADLRDHLSS------------VYDLERLVARV------SRER 383
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P + + L S LL+++ S+ E E +R +G+ + D
Sbjct: 384 ADARDLRSLKTTLDRVPEIREALAGTDSDLLSDLRDSLDELED---VRDLVGDAVVSDPP 440
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G D LD R + E V NL + +E + +L++ +N
Sbjct: 441 Q-------EITEGGVIADGFDAELDDVRGTAEAGREWVSNLEAREQERTGIDSLEVGYNQ 493
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE---- 291
G+Y+ + + ++ ++P + Q +K+ + L E L +++ A E
Sbjct: 494 VHGYYIEVTNPNLD-RVPDDYQRRQTLKNSERFYTPELKEREDEILRASDRADALEYDLF 552
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
C +R ++ E A+ DA+ D+ VL LA+V D Y RP
Sbjct: 553 CEVRADVATESARIQAVADAL-ADLDVLRTLADVAVAND-----------------YARP 594
Query: 347 HF-----TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQ 401
F E+ + ID GRHP++E ++F+PN + ++ +VTGPNMSGKSTY++Q
Sbjct: 595 EFHAGDTDESAGIRIDAGRHPVVERAQDEFVPNPADLPR-GSVALVTGPNMSGKSTYMRQ 653
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
V L+ +LAQ+G +VPA + + V+DR+FTR+G D++ STFM EM E ++ N +
Sbjct: 654 VALVTLLAQVGSFVPAKSARLPVLDRVFTRIGASDDIAGGQSTFMREMSELTEILHNATG 713
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILH 520
SL+++DE+GR TS++DG AIA + E L + A T+FA+H +L++ A V LH
Sbjct: 714 DSLVLLDEVGRGTSTADGLAIARAATEFLHDEVGATTLFATHYHDLTDAADDRAGVFNLH 773
Query: 521 FYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
F R+ + F + DGP YG+ +A++AG+P++V+E AR++
Sbjct: 774 FTAARRDGEVTFLHSVADGPSS-SSYGVEVAQLAGVPASVVERARTL 819
>gi|262273679|ref|ZP_06051492.1| DNA mismatch repair protein MutS [Grimontia hollisae CIP 101886]
gi|262222094|gb|EEY73406.1| DNA mismatch repair protein MutS [Grimontia hollisae CIP 101886]
Length = 870
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 181/571 (31%), Positives = 286/571 (50%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L L + +L +L T T G+RLL+ L QP++D + +N
Sbjct: 282 LDAATRRNLELTQNLSGGL------ENTLASVLDRTTTPMGSRLLKRWLHQPMRDFKIVN 335
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + L + L+ L+ LR + +R+L + + D A+
Sbjct: 336 RRLDAITAL-KDTGLYVDLAAALRPV-GDMERILGRLAIRSARPR------DMAR----- 382
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ AL LP + +L++ Q ++ + ++ + E+++ ++ A
Sbjct: 383 ------LRGALQQLPEIESLLEEVQD-------SAITPLKTASAPMPELAELLERAIVEA 429
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R + + L + R+ + LK+ FN
Sbjct: 430 -PPVVIRDGGVIAP--GYNAELDEWRDLADGATRYLEELEARERDRHDIDTLKVGFNQVH 486
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 487 GFYIQV-SRGQSHLVPPYYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 542
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L L A+ L LD++ N S Y RP TE + I
Sbjct: 543 --WEELFDQLLPHLEKLQLAADALSTLDVLANLAERAESLN----YCRPTLTETRGIDIA 596
Query: 358 GGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + + FI N + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 597 GGRHPVVEQVMDAPFIANPTALHPDRRMLIITGPNMGGKSTYMRQTALITLMAHIGSYVP 656
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +T+ VDRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+
Sbjct: 657 AESATMGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTST 716
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L LKA T+FA+H L+ELA P + +H V + + F
Sbjct: 717 YDGLSLAWASAEWLAEKLKAMTLFATHYFELTELAGQVPGLVNVHLDAVEHGDEIAFMHA 776
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ A++
Sbjct: 777 VQEGAAS-KSYGLAVAGLAGVPKAVIQRAKT 806
>gi|372488883|ref|YP_005028448.1| DNA mismatch repair protein MutS [Dechlorosoma suillum PS]
gi|359355436|gb|AEV26607.1| DNA mismatch repair protein MutS [Dechlorosoma suillum PS]
Length = 867
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 179/598 (29%), Positives = 293/598 (48%), Gaps = 68/598 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ E L +LF +L + T G R LR L P +D
Sbjct: 266 LGLDAATRRNLELTETLRG------EASPTLFSLLDSCITAMGARYLRHALHHPRRDRAV 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK---ETDRVLCHFCFK---PKKVTSKVLDVD 114
R+D + LM++ L+Q+LR K + +R+ + P+ ++S
Sbjct: 320 PAARIDAIGALMADH---LALAQYLRSGLKGFADVERIAGRIALRNARPRDLSS------ 370
Query: 115 NAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
L+ +L L L + L S LL ++ + +I + +
Sbjct: 371 --------------LRDSLACLEELRRPLAGHPSPLLGELWGQL--EAPVEAIELLLRAI 414
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
E R V T G D LD R + + +L + +E + L
Sbjct: 415 AQEPAAMVRDGGVMAT--------GFDAELDELRALNDNCGAFLVDLEAREKERTGIATL 466
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
K+ +N GFY+ + H + K+P + + N T EL + + SA
Sbjct: 467 KVEYNRVHGFYIEVTHANAD-KVPDDYRRRQTLKNAERYITPELKAFEDKALSAQDRALA 525
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
R + E ++D ++ V L +A L LDM+ SFA T + + RP FT+ L
Sbjct: 526 REKWLYEQVLDQLQPVVPQLQAVARALAQLDMLA-SFADTAVAR---NWCRPEFTDRPGL 581
Query: 355 AIDGGRHPILE----SIHNDFIPNNIFISEAAN----MVIVTGPNMSGKSTYLQQVCLIV 406
++ GRHP++E + + FIPN++ + E+ + ++++TGPNM GKSTY++Q LI
Sbjct: 582 WLEAGRHPVVENELQAQGDTFIPNDLDLGESEDAERRLLLITGPNMGGKSTYMRQTALIA 641
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
+LA +GCYVPA + + +D+IFTR+G D+L S STFM EM E+A ++ N +E+SL++
Sbjct: 642 LLAHVGCYVPAKAARLGPMDQIFTRIGASDDLASGRSTFMVEMTESAAILHNATEQSLVL 701
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVI 525
MDE+GR TS+ DG A+A + HLL ++ T+FA+H L+ LA YP + +H V
Sbjct: 702 MDEVGRGTSTFDGMALAMAILRHLLEKNRSLTLFATHYFELTRLAHEYPALVNVHLDAVE 761
Query: 526 RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINC 583
+R+ F +++GP + YG+ +A +AG+PS V+ R KKE++++E
Sbjct: 762 HGDRIVFLHAVEEGPANQ-SYGIQVAALAGIPSAVV--------RAAKKELRQLETRA 810
>gi|212218392|ref|YP_002305179.1| DNA mismatch repair protein MutS [Coxiella burnetii CbuK_Q154]
gi|212012654|gb|ACJ20034.1| DNA mismatch repair protein [Coxiella burnetii CbuK_Q154]
Length = 871
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 178/576 (30%), Positives = 288/576 (50%), Gaps = 64/576 (11%)
Query: 3 IDATSVRNLEII-----EPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKD 57
IDA + RNLE+I E +HS W +L T T G+RLLR + +PL+D
Sbjct: 286 IDANTRRNLELITNLQGEEVHSLAW-----------LLDHTATPMGSRLLRRWINRPLRD 334
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
+ R + + L+ + + + LR + +R++ + +
Sbjct: 335 QILLQQRQNAVSTLLEKRN-YSEIYENLRHI-GDLERIVARIALRSARP----------- 381
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ L+ AL LP L + L + + N++ I+ +G + DE
Sbjct: 382 ------RDLMQLRQALGVLPTLHQQLTN------------LPLNKQLQEIKNNLG-LFDE 422
Query: 178 ------DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL 231
+ P V R A G D LD R ++ + + +L + RE K+
Sbjct: 423 LFRLLQKAIIENPPIVIRDGGVIA--DGYDAPLDELRNMSTNSHQFLIDLEQQERERTKI 480
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
LK+ +N G+Y+ I + + P+ +I+ N T EL + S+
Sbjct: 481 NTLKVGYNRIHGYYIEISRAQAK-QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSR 539
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
R + E L+D + E + L A + LD ++N+ A T + P F +
Sbjct: 540 ALAREKELYEQLLDTLIEKLIPLQQCASAIANLD-VLNTLAERADTL---NFNAPQFCDY 595
Query: 352 GPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I+ GRHPI+E++ D F+PN+ + E M+I+TGPNM GKSTY++Q LI +LA
Sbjct: 596 PIIKIEAGRHPIVENVMTDPFMPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAY 655
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + + +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+
Sbjct: 656 IGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEV 715
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++A++C +L + LKA+ +FA+H L+ LA+ P VK +H V +
Sbjct: 716 GRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHLDAVEHEEK 775
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+ F L++GP + YGL +A++AG+P +VI+ AR
Sbjct: 776 IIFLHALREGPAN-KSYGLQVAQLAGIPRSVIQHAR 810
>gi|209363939|ref|YP_001424366.2| DNA mismatch repair protein MutS [Coxiella burnetii Dugway
5J108-111]
gi|207081872|gb|ABS76827.2| DNA mismatch repair protein [Coxiella burnetii Dugway 5J108-111]
Length = 871
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 178/576 (30%), Positives = 288/576 (50%), Gaps = 64/576 (11%)
Query: 3 IDATSVRNLEII-----EPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKD 57
IDA + RNLE+I E +HS W +L T T G+RLLR + +PL+D
Sbjct: 286 IDANTRRNLELITNLQGEEVHSLAW-----------LLDHTATPMGSRLLRRWINRPLRD 334
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
+ R + + L+ + + + LR + +R++ + +
Sbjct: 335 QILLQQRQNAVSTLLEKRN-YSEIYENLRHI-GDLERIVARIALRSARP----------- 381
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ L+ AL LP L + L + + N++ I+ +G + DE
Sbjct: 382 ------RDLMQLRQALGVLPTLHQQLTN------------LPLNKQLQEIKNNLG-LFDE 422
Query: 178 ------DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL 231
+ P V R A G D LD R ++ + + +L + RE K+
Sbjct: 423 LFRLLQKAIIENPPIVIRDGGVIA--DGYDAPLDELRNMSTNSHQFLIDLEQQERERTKI 480
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
LK+ +N G+Y+ I + + P+ +I+ N T EL + S+
Sbjct: 481 NTLKVGYNRIHGYYIEISRAQAK-QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSR 539
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
R + E L+D + E + L A + LD ++N+ A T + P F +
Sbjct: 540 ALAREKELYEQLLDTLIEKLIPLQQCASAIANLD-VLNTLAERADTL---NFNAPQFCDY 595
Query: 352 GPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I+ GRHPI+E++ D F+PN+ + E M+I+TGPNM GKSTY++Q LI +LA
Sbjct: 596 PIIKIEAGRHPIVENVMTDPFMPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAY 655
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + + +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+
Sbjct: 656 IGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEV 715
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++A++C +L + LKA+ +FA+H L+ LA+ P VK +H V +
Sbjct: 716 GRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHLDAVEHEEK 775
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+ F L++GP + YGL +A++AG+P +VI+ AR
Sbjct: 776 IIFLHALREGPAN-KSYGLQVAQLAGIPRSVIQHAR 810
>gi|444376499|ref|ZP_21175743.1| DNA mismatch repair protein MutS [Enterovibrio sp. AK16]
gi|443679477|gb|ELT86133.1| DNA mismatch repair protein MutS [Enterovibrio sp. AK16]
Length = 846
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 182/571 (31%), Positives = 286/571 (50%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L L + ++ +L T T G+RLL+ L QP++D + +N
Sbjct: 257 LDAATRRNLELTQNLSGGL------ENTVASVLDRTTTPMGSRLLKRWLHQPMRDFKIVN 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + L + L+ L+ LR + +R+L + + D A+
Sbjct: 311 RRLDAITAL-KDTGLYVDLANSLRPV-GDMERILGRLAIRSARPR------DMAR----- 357
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ AL LP + +L + Q +A + ++ + A E+++ ++ A
Sbjct: 358 ------LRGALQQLPEIESLLDEVQDEAIAPLKQASAPMPELA-------ELLERAIVEA 404
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R + + L + R+ + LK+ FN
Sbjct: 405 -PPVVIRDGGVIAP--GYNAELDEWRDLADGATRYLEELEARERDRHDIDTLKVGFNQVH 461
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 462 GFYIQV-SRGQSHLVPPYYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 517
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L AE L LD++ N S Y RP TE + I
Sbjct: 518 --WEELFDQLLPHLEKLQRAAEALSTLDVLANLAERAESLN----YCRPTLTEQRGIDIA 571
Query: 358 GGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + + FI N ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 572 GGRHPVVEQVMDAPFIANPTSLNPDRRMLIITGPNMGGKSTYMRQTALITLMAHIGSYVP 631
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A T+ VDRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+
Sbjct: 632 AESVTLGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTST 691
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L LKA T+FA+H L+EL+ P + +H V + + F
Sbjct: 692 YDGLSLAWASAEWLAEKLKAMTLFATHYFELTELSGQVPGLVNVHLDAVEHGDEIAFMHA 751
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P TVI+ A++
Sbjct: 752 VQEGAAS-KSYGLAVAGLAGVPKTVIQRAKT 781
>gi|334129700|ref|ZP_08503504.1| DNA mismatch repair protein MutS [Methyloversatilis universalis
FAM5]
gi|333445385|gb|EGK73327.1| DNA mismatch repair protein MutS [Methyloversatilis universalis
FAM5]
Length = 836
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 178/583 (30%), Positives = 283/583 (48%), Gaps = 55/583 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ E L +L +L T + G+R LR L PL+D
Sbjct: 251 LRMDAATRRNLELTETLRG------EAAPTLLSLLDTCASSMGSRWLRRALHHPLRDRAR 304
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRV-LCHFCFKP----KKVTSKV-LDVD 114
+ R + + L ++TDR L H + +++ ++V L
Sbjct: 305 ADARQEAVAAL------------------RDTDRADLVHEALRGIADIERIAARVALRTA 346
Query: 115 NAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
+ +L S+ L DA+PL +L A++ + A+ V
Sbjct: 347 RPRDLSSLRDSLAKLPAIADAIPLDRGLLDQARA----------TLAQPPAAAALLAQAV 396
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
+DE A+ + I+ G D LD R + E + L + RE + NL
Sbjct: 397 MDEPA--------AQLRDGRVIRAGFDAELDELRGLQDNCGEFLLALEARERERTGIANL 448
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
K+ +N GFY+ + + + G++P + + N T EL + R SAA
Sbjct: 449 KVEYNRVHGFYIEVTNANA-GRVPDDYRRRQTLKNAERYITPELKAFEDRALSAAERATS 507
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
R + E L+DA+ ++ L +A L LD ++ +FA Y RP F + +
Sbjct: 508 REKFLYEQLLDALAPELPQLGDIARALSELDGLI-AFARAAQRHD---YCRPQFVDEPVI 563
Query: 355 AIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+ GRHP++E + FI N+ + +A M+++TGPNM GKSTY++QV LI ++A GC
Sbjct: 564 TIERGRHPVVEQQVDSFIANDTVMHDARRMLLITGPNMGGKSTYMRQVALIALMAHCGCP 623
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + +D I TR+G D+L S STFM EM E A ++ +ERSL++MDE+GR T
Sbjct: 624 VPARAVRLGPLDAIHTRIGASDDLASGRSTFMVEMTEAAAILHGATERSLVLMDEIGRGT 683
Query: 475 SSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG A+A S HLL+ +++T+FA+H L++LA +P +H V NR+ F
Sbjct: 684 STFDGVALAQSIARHLLTRNRSWTLFATHYFELTQLAATHPVCANMHLDAVEHGNRIVFL 743
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+++GP YG+ +A +AG+P TVI AR ++ V
Sbjct: 744 HAIEEGPAS-QSYGIEVAALAGVPGTVIRDARRALQQLEASRV 785
>gi|153206840|ref|ZP_01945681.1| DNA mismatch repair protein MutS [Coxiella burnetii 'MSU Goat
Q177']
gi|165918512|ref|ZP_02218598.1| DNA mismatch repair protein MutS [Coxiella burnetii Q321]
gi|120577203|gb|EAX33827.1| DNA mismatch repair protein MutS [Coxiella burnetii 'MSU Goat
Q177']
gi|165917758|gb|EDR36362.1| DNA mismatch repair protein MutS [Coxiella burnetii Q321]
Length = 859
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 178/577 (30%), Positives = 288/577 (49%), Gaps = 64/577 (11%)
Query: 3 IDATSVRNLEII-----EPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKD 57
IDA + RNLE+I E +HS W +L T T G+RLLR + +PL+D
Sbjct: 274 IDANTRRNLELITNLQGEEVHSLAW-----------LLDHTATPMGSRLLRRWINRPLRD 322
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
+ R + + L+ + + + LR + +R++ + +
Sbjct: 323 QILLQQRQNAVSTLLEKRN-YSEIYENLRHI-GDLERIVARIALRSARP----------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ L+ AL LP L + L + + N++ I+ +G + DE
Sbjct: 370 ------RDLMQLRQALGVLPTLHQQLTN------------LPLNKQLQEIKNNLG-LFDE 410
Query: 178 ------DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL 231
+ P V R A G D LD R ++ + + +L + RE K+
Sbjct: 411 LFRLLQKAIIENPPIVIRDGGVIA--DGYDAPLDELRNMSTNSHQFLIDLEQQERERTKI 468
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
LK+ +N G+Y+ I + + P+ +I+ N T EL + S+
Sbjct: 469 NTLKVGYNRIHGYYIEISRAQAK-QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSR 527
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
R + E L+D + E + L A + LD ++N+ A T + P F +
Sbjct: 528 ALAREKELYEQLLDTLIEKLIPLQQCASAIANLD-VLNTLAERADTL---NFNAPQFCDY 583
Query: 352 GPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I+ GRHPI+E++ D F+PN+ + E M+I+TGPNM GKSTY++Q LI +LA
Sbjct: 584 PIIKIEAGRHPIVENVMTDPFMPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAY 643
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + + +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+
Sbjct: 644 IGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEV 703
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++A++C +L + LKA+ +FA+H L+ LA+ P VK +H V +
Sbjct: 704 GRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHLDAVEHEEK 763
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+ F L++GP + YGL +A++AG+P +VI+ AR
Sbjct: 764 IIFLHALREGPAN-KSYGLQVAQLAGIPRSVIQHARQ 799
>gi|222529489|ref|YP_002573371.1| DNA mismatch repair protein MutS [Caldicellulosiruptor bescii DSM
6725]
gi|254766611|sp|B9MJU0.1|MUTS_ANATD RecName: Full=DNA mismatch repair protein MutS
gi|222456336|gb|ACM60598.1| DNA mismatch repair protein MutS [Caldicellulosiruptor bescii DSM
6725]
Length = 863
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 196/609 (32%), Positives = 305/609 (50%), Gaps = 81/609 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID + RNLE+ E + ++K SL +L TKT G+RLL+ + +PL DI
Sbjct: 254 LQIDINTKRNLELTESIIQ-----RSRKNSLLGILDQTKTSMGSRLLKKWIERPLIDIIE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++EL SN + + L + + +R+ F +K NAK
Sbjct: 309 INKRLDSVEELKSNYSTLVQVEELLSRM-YDIERLSSKFAYKNV----------NAK--- 354
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK +++ LP L + L S LL IY + + I I I+ED
Sbjct: 355 ----DLLSLKKSIEVLPTLKQFLSSFDSELLKEIYEGL---DTLEDIYALIDSSINED-- 405
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A V ++ IK G + +D R ++ E + K R + NL++ +N
Sbjct: 406 -APVSL----KEGGIIKEGFNEEVDRLRNISKNSKELLVEYEEKERNLTGIKNLRIGYNK 460
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE--------- 291
G+Y+ + + +P +I+ N T EL L A +
Sbjct: 461 VFGYYIEVTKSNY-SLVPDRYIRKQTLANAERYITEELKKLEDEILGADQKLIELEYQLF 519
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFTE 350
C IR I EA ++ I++ S + L +VLC SFA +D Y RP+
Sbjct: 520 CEIRDRI--EAQIERIQKTASNIANL-DVLC-------SFARI----AIDNEYVRPNVYL 565
Query: 351 NGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVI 407
+ I GRHP++E + +FIPN+ + +A N V I+TGPNM+GKSTY++QV LIVI
Sbjct: 566 GDRIYIKNGRHPVVEKMIGRGNFIPNDTELDQAENRVLIITGPNMAGKSTYMRQVALIVI 625
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+GC+VPA + I VVD+IF+R+G D++ S STFM EM E A +++N + +SLI+
Sbjct: 626 MAQMGCFVPADEAHIGVVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIF 685
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAW+ E++ + A T+FA+H L+EL P VK
Sbjct: 686 DEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVK------- 738
Query: 525 IRNNRLDFKFQLKD--GPRHV------PHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
N R+D K + K+ R + YG+ +A +AG+P V++ A I ++ + ++
Sbjct: 739 --NYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEEILKQLEEADI 796
Query: 577 KRMEINCLQ 585
R I L+
Sbjct: 797 NRKNIRKLR 805
>gi|119510583|ref|ZP_01629713.1| DNA mismatch repair protein [Nodularia spumigena CCY9414]
gi|119464744|gb|EAW45651.1| DNA mismatch repair protein [Nodularia spumigena CCY9414]
Length = 863
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 185/598 (30%), Positives = 295/598 (49%), Gaps = 77/598 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + + SL L + T G R LR LLQPL D++ I
Sbjct: 304 VDNQTRRNLEITQTVRDSTF-----HGSLLWALDRSSTAMGGRALRRWLLQPLIDLKGIG 358
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLD-VDNAKKSQT 121
R + + ELM N L L Q LR+ + +++T + NAK
Sbjct: 359 ARQNTIQELMENTPLRQDLRQLLRQI------------YDLERLTGRAASGTANAK---- 402
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
++ L +L LP L+ ++ DA+S L + R E + A +K +++ +H
Sbjct: 403 ---DLVALADSLSRLPQLSHLVIDARSPFLKALQRVPAELSELA--QKLHAHLVESPPIH 457
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
+ + I+ G++ +LD + + + + NL R + +PNLK+ FN
Sbjct: 458 IK--------EGGLIRPGMNPMLDERKATVESDQQWIANLEVDERAKTGIPNLKVGFNKT 509
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE---------C 292
G+Y+SI + ++P +I+ N T EL R +A +
Sbjct: 510 FGYYISI-SRSKSDQVPDNYIRKQTLTNEERYITPELKEREARILTARDDLNQLEYEIFV 568
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLC-LLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
+R E+ +A I + S A+VLC L ++ V Y RP E
Sbjct: 569 ELREEVGQQA---EIIRNTSRAVAAADVLCGLAELAVQQG-----------YCRPQMVEG 614
Query: 352 GPLAIDGGRHPILES--IHNDFIPNNIFIS-------------EAANMVIVTGPNMSGKS 396
+ I GRHP++E F+PN+ + E ++VI+TGPN SGKS
Sbjct: 615 REIMIVDGRHPVVEQSLPAGFFVPNSTQLGREERNHRGAEGAEERPDLVILTGPNASGKS 674
Query: 397 TYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVM 456
YL+QV LI ++AQIG +VPA F+ + V DRIFTR+G VD+L + STFM EM ETA ++
Sbjct: 675 CYLRQVGLIQLMAQIGSFVPARFAKLGVCDRIFTRVGAVDDLATGQSTFMVEMNETANIL 734
Query: 457 QNVSERSLIVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPN 515
+ + +SL+++DE+GR T++ DG +IAW+ E++ + ++A TIFA+H L+EL++I PN
Sbjct: 735 NHATAKSLVLLDEIGRGTATFDGLSIAWAVAEYIAVDIRARTIFATHYHELNELSSILPN 794
Query: 516 VKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
V V +R+ F Q++ G YG+ +AGLP VI+ A+ + +I K
Sbjct: 795 VANYQVTVKELPDRIIFLHQVQPGGAD-KSYGIEAGRLAGLPDVVIQRAKQVMGQIEK 851
>gi|218132528|ref|ZP_03461332.1| hypothetical protein BACPEC_00387 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992638|gb|EEC58640.1| DNA mismatch repair protein MutS [[Bacteroides] pectinophilus ATCC
43243]
Length = 884
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 181/599 (30%), Positives = 300/599 (50%), Gaps = 55/599 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID++S RNLE++E L K+ SL +L TKT G R LRA + QPL D +
Sbjct: 267 MLIDSSSRRNLELVETLRE-----KQKRGSLLWVLDKTKTAMGARRLRAMIEQPLIDHDE 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D + E N +E R + + +++ SK+ + + +
Sbjct: 322 IINRQDVIAEFNDN------------VITREEIREYLNPVYDLERLMSKI----SCRTAN 365
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ +++L LP + ++K S L+ IY + + I + I I +D
Sbjct: 366 P--RDLLAFRSSLQMLPYVKDLIKPFNSVLMQKIYEKL---DPLEDIYQLIDSAIVDDP- 419
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + IK G + D R++ D + L + +E+ + NL++ +N
Sbjct: 420 ----PIVLR--EGGIIKEGYNAQADELRKAKTDGKTWLAGLEEREKEQTGIKNLRVKYNK 473
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + +KD+ +P +++ N +T EL +L A + Y
Sbjct: 474 VFGYYLEVTNSYKDL---VPDNWVRKQTLSNAERYTTEELKNLEDVILGAEDKLYALEYD 530
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ D I V + A+ + +D+ FA + Y RP + G + I
Sbjct: 531 LFVDVRDKIASQVMRIQSTAKAIAEIDV----FASLALVAEQNNYVRPKINDKGLIDIKD 586
Query: 359 GRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E I ND FI N+ + AN + I+TGPNM+GKSTY++Q LIV++AQ+G +V
Sbjct: 587 GRHPVVEKMISNDMFIANDTLLDNNANRISIITGPNMAGKSTYMRQTALIVLMAQVGSFV 646
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +VDRIFTR+G D+L S STFM EM E A +++N + +SL+++DE+GR TS
Sbjct: 647 PASSANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRGTS 706
Query: 476 SSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAW+ EH+ + L A T+FA+H L+EL V ++ + ++ D
Sbjct: 707 TFDGLSIAWAVVEHISNKNLLGAKTLFATHYHELTELEGTLGGVN--NYCIAVKEQGDDI 764
Query: 533 KFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
F +K G YG+ +A++AG+P +VI A+ + + ++ ++ + QY +
Sbjct: 765 VFLRKIVKGGADK--SYGIQVAKLAGVPDSVIARAKELVNDLSDADISQKAKEIAQYDK 821
>gi|448599457|ref|ZP_21655361.1| DNA mismatch repair protein MutS [Haloferax alexandrinus JCM 10717]
gi|445736918|gb|ELZ88458.1| DNA mismatch repair protein MutS [Haloferax alexandrinus JCM 10717]
Length = 922
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 176/587 (29%), Positives = 293/587 (49%), Gaps = 75/587 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ E SA G++ LF +L T G R L A L +PL D +
Sbjct: 288 LQLDATAIRSLELFES-RSARAGST-----LFSVLDETACALGRRRLEAWLRRPLVDRDE 341
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++ L + L L + +++ ++V + +
Sbjct: 342 IEARLDAVEALCDDALARADLRDHLSS------------VYDLERLVARV------SRER 383
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P + L S LL+++ S+ E E +R +G+ + D
Sbjct: 384 ADARDLRSLKTTLDRVPEIRDALDGTDSDLLSDLRDSLDELED---VRDLVGDAVVSDPP 440
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G D LD R + E V NL + +E + +L++ +N
Sbjct: 441 Q-------EITEGGVIADGFDAELDDVRGTAEAGREWVSNLEAREQERTGIDSLEVGYNQ 493
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE---- 291
G+Y+ + + ++ ++P + Q +K+ + L E L +++ A E
Sbjct: 494 VHGYYIEVTNPNLD-RVPDDYQRRQTLKNSERFYTPELKEREDEILRASDRADALEYDLF 552
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
C +R ++ E A+ DA+ D+ VL LA+V D Y RP
Sbjct: 553 CEVRADVATESARIQAVADAL-ADLDVLRTLADVAVAND-----------------YARP 594
Query: 347 HF-----TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQ 401
F E+ + ID GRHP++E ++F+PN + ++ +VTGPNMSGKSTY++Q
Sbjct: 595 EFHAGDTDESAGIRIDAGRHPVVERAQDEFVPNPADLPR-GSVALVTGPNMSGKSTYMRQ 653
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
V L+ +LAQ+G +VPA + + V+DR+FTR+G D++ STFM EM E ++ N +
Sbjct: 654 VALVTLLAQVGSFVPAKSARLPVLDRVFTRIGASDDIAGGQSTFMREMSELTEILHNATG 713
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILH 520
SL+++DE+GR TS++DG AIA + E L + A T+FA+H +L++ A V LH
Sbjct: 714 DSLVLLDEVGRGTSTADGLAIARAATEFLHDEVGATTLFATHYHDLTDAADDRAGVFNLH 773
Query: 521 FYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
F R+ + F + DGP YG+ +A++AG+P++V+E AR++
Sbjct: 774 FTAARRDGEVTFLHSVADGPSS-SSYGVEVAQLAGVPASVVERARTL 819
>gi|300113486|ref|YP_003760061.1| DNA mismatch repair protein MutS [Nitrosococcus watsonii C-113]
gi|299539423|gb|ADJ27740.1| DNA mismatch repair protein MutS [Nitrosococcus watsonii C-113]
Length = 863
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 194/636 (30%), Positives = 308/636 (48%), Gaps = 70/636 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++ RNLE+ E +L G SN +L +L T T G+RLLR L +PL+D +
Sbjct: 270 LDPSTRRNLELEE----SLSGHSNHN-TLIAVLDRTATAMGSRLLRRYLHRPLRDQTLLK 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPK---ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R L L+ GL+ L+K + + +R+L + +++ D+ +++
Sbjct: 325 QRQQALAALLEG-----GLTDILQKLLRGIGDIERILSRVALR----SARPRDLVQLRQA 375
Query: 120 QTLISSI--ILLKTALDALPLLAKVLKDAQSF--LLANIYRSVCENEKYASIRKRIGEVI 175
L+ I LL+ D++ LL + +D F L + R++CEN
Sbjct: 376 LGLLPKIRESLLQLNRDSI-LLQSLQEDLGPFPKLHELLQRAICENP------------- 421
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
P + R A+ G D LD R + + + L + RE K+P LK
Sbjct: 422 ---------PVLIRDGGVIAL--GFDSELDELRHLSGNAGQFLVELEQRERERTKIPTLK 470
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +N G+YL I P + G + T EL + SA R
Sbjct: 471 IGYNKVHGYYLEITRAQAHQAPPDYIRRQTLKGAERYI-TPELKGFEDQVLSARERALAR 529
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ E L++ E + L A L LD++ N A T Y P ++ +
Sbjct: 530 EKALYEGLLEQFMEPLPALRACANALAELDVLHN-LAERAKTL---EYVVPLLSDQPGIL 585
Query: 356 IDGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+ GRHP++E ++ N F+PN++ + E M+I+TGPNM GKSTY++Q LIV+LA IG +
Sbjct: 586 IEEGRHPVVEQTLENPFVPNDLTLQETRRMLIITGPNMGGKSTYMRQTALIVLLAHIGSF 645
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L STFM EM ETA ++ N ++ SL+++DE+GR T
Sbjct: 646 VPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTETANILHNATQYSLVLLDEVGRGT 705
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ +L+ + ++ T+FA+H L+ L V LH R+ F
Sbjct: 706 STFDGLSLAWAVASYLVNNARSLTLFATHYFELTALPEHLDGVANLHLTATEHKERIVFL 765
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK------ 587
+K+GP YGL +A +AG+P VI AR + + ++E N Q
Sbjct: 766 HAVKEGPASQ-SYGLQVAALAGVPQEVIAQAR--------QRLMKLESNAEQKSTHGDGA 816
Query: 588 QIQMLYHAAQR--LICLKYSNQDEESIRHALQNLKE 621
Q+ +L +A+ + L+ + DE + R AL L E
Sbjct: 817 QLDLLALSAEHPAVQILRELDPDELTPRQALTKLYE 852
>gi|357404493|ref|YP_004916417.1| DNA mismatch repair protein MutS [Methylomicrobium alcaliphilum
20Z]
gi|351717158|emb|CCE22823.1| DNA mismatch repair protein MutS [Methylomicrobium alcaliphilum
20Z]
Length = 855
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 177/573 (30%), Positives = 293/573 (51%), Gaps = 55/573 (9%)
Query: 1 MNIDATSVRNLEI-IEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
+ +DA S RNLE+ P T + +LF +L T T G+R LR + +PL+D
Sbjct: 267 IQLDAASRRNLELDTHP-------TGELRYTLFGVLDKTVTAMGSRCLRRWINRPLRDQA 319
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
+ R ++ L+S E+L + L + +R+ K +
Sbjct: 320 ILQNRYSAIESLLS-ERLLDAVRNQLNAV-GDIERISSRIALKSARP------------- 364
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I+L+ L LP L +L + S L + + + E + + + +R +ID
Sbjct: 365 ----RDLIVLRNTLAVLPTLQPLLSNTDSPELMRLAKQLTEQPELSELLQRA--IIDNP- 417
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + R A G LD R + + + ++ + + + LK+ +N
Sbjct: 418 -----PVLIRDGGVIA--PGYHAELDELRNLSRNADQFLLDMEEREKAATGISGLKVNYN 470
Query: 240 NRQGFYLSIPHKDIQGKLPSTF-----IQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
G+Y+ + + K+P+ + ++ V+ T E L+ + KS A E +
Sbjct: 471 RVHGYYIEVSRLHAE-KVPAHYHRKQTLKGVERYITEELKTFEDKVLSAKEKSLAFEKSL 529
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
+ L++ + E + L A+ L LD++ +FA T TRP T+ +
Sbjct: 530 -----YDQLLNKLGESLIDLQQCAQGLAELDVLA-AFAERAETL---NLTRPQLTDKPGI 580
Query: 355 AIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I+GGRHP++E + + F+ N++ +S M+I+TGPNM GKSTY++Q LIV++A IGC
Sbjct: 581 DIEGGRHPVVEQVSDIPFVANDLKLSPQRRMLIITGPNMGGKSTYMRQAALIVLIAHIGC 640
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
YVPA +TI VD+IFTR+G D+L STFM EM ETA ++ N +E+SLI+MDE+GR
Sbjct: 641 YVPAKAATIGPVDKIFTRIGASDDLAGGRSTFMVEMSETANILHNATEQSLILMDEIGRG 700
Query: 474 TSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+C +HL + KAYT+FA+H L+ LA + +H + +++ F
Sbjct: 701 TSTFDGLSLAWACADHLAKVTKAYTLFATHYFELTTLADEQKPIHNVHLDAMEYGDKIVF 760
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+K+GP YGL +A +AG+P+TVI+ A+
Sbjct: 761 LHAVKEGPAS-QSYGLQVASLAGVPATVIDKAK 792
>gi|262373025|ref|ZP_06066304.1| DNA mismatch repair protein MutS [Acinetobacter junii SH205]
gi|262313050|gb|EEY94135.1| DNA mismatch repair protein MutS [Acinetobacter junii SH205]
Length = 885
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 179/603 (29%), Positives = 314/603 (52%), Gaps = 66/603 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLINDCQTAMGGRLLSRTLMQPIRDTAILD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q L+ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLLKGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A VL +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRQACAQIPFLRHALAPVLNTQKSKLLIELDQQLGD---FKSLHQHLIAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K R+ + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDDELDELRKIRDHAGQFLIDLEIKERQRTGINTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R ++
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKL 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E+L+D +R++++ L +++ + +D++ N FA+ ++ + RP +T + I
Sbjct: 540 LFESLLDELRQNIAQLQMMSAAIAHIDVLAN-FAYQAR---LNNWARPEYTPETCIKIQA 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++ES++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA GC+VPA
Sbjct: 596 GRHPVVESLNKAPFTPNDTFLDHQHRMAIITGPNMGGKSTFMRQTALISLLAYCGCFVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 KSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L +K +FA+H L+EL + I +++V + N L
Sbjct: 716 DGLSLAWACVLDLTKRIKCLCLFATHYFELTELGS---EAGIDNYHVTAQELNGNLILLH 772
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYH 594
+++ GP H GL +A++AG+P+ VI+ A+ KR++I L+ +Q Q L +
Sbjct: 773 KVQHGPASQSH-GLQVAKLAGIPANVIKDAQ-----------KRLKI--LEKQQHQHLQN 818
Query: 595 AAQ 597
+ Q
Sbjct: 819 SVQ 821
>gi|212212527|ref|YP_002303463.1| DNA mismatch repair protein MutS [Coxiella burnetii CbuG_Q212]
gi|212010937|gb|ACJ18318.1| DNA mismatch repair protein [Coxiella burnetii CbuG_Q212]
Length = 871
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 289/578 (50%), Gaps = 66/578 (11%)
Query: 3 IDATSVRNLEII-----EPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKD 57
IDA + NLE+I E +HS W +L T T G+RLLR + +PL+D
Sbjct: 286 IDANTRLNLELITNLQGEEVHSLAW-----------LLDHTATAMGSRLLRRWINRPLRD 334
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
+ R + + L+ + + + LR + +R++ + +
Sbjct: 335 QILLQQRQNAVSTLLEKRN-YSEIYENLRHI-GDLERIVARIALRSARP----------- 381
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ L+ AL LP L + L + + N++ I+ +G + DE
Sbjct: 382 ------RDLMQLRQALGVLPTLHQQLTN------------LPLNKQLQEIKNNLG-LFDE 422
Query: 178 ------DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL 231
+ P V R A G D LD R ++ + + +L + RE K+
Sbjct: 423 LFRLLQKAIIENPPIVIRDGGVIA--DGYDAPLDELRNMSTNSHQFLIDLEQQERERTKI 480
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
LK+ +N G+Y+ I +Q K P+ +I+ N T EL + S+
Sbjct: 481 NTLKVGYNRIHGYYIEISR--VQAKQAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRS 538
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
R + E L+D + E + L A + LD ++N+ A T + P F +
Sbjct: 539 RALAREKELYEQLLDTLIEKLIPLQQCASAIANLD-VLNTLAERADTL---NFNAPQFCD 594
Query: 351 NGPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
+ I+ GRHPI+E++ D F+PN+I + E M+I+TGPNM GKSTY++Q LI +LA
Sbjct: 595 YPIIKIEAGRHPIVENVMTDPFMPNDIHLDEKRRMLIITGPNMGGKSTYMRQTALITLLA 654
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
IG +VPA + + +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE
Sbjct: 655 YIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDE 714
Query: 470 LGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
+GR TS+ DG ++A++C +L + LKA+ +FA+H L+ LA+ P VK +H V
Sbjct: 715 VGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHLDAVEHEE 774
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
++ F L++GP + YGL +A++AG+P +VI+ AR
Sbjct: 775 KIIFLHALREGPAN-KSYGLQVAQLAGIPRSVIQHARQ 811
>gi|292656069|ref|YP_003535966.1| DNA mismatch repair protein MutS [Haloferax volcanii DS2]
gi|448290061|ref|ZP_21481217.1| DNA mismatch repair protein MutS [Haloferax volcanii DS2]
gi|291371610|gb|ADE03837.1| DNA mismatch repair protein mutS [Haloferax volcanii DS2]
gi|445580453|gb|ELY34832.1| DNA mismatch repair protein MutS [Haloferax volcanii DS2]
Length = 921
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 176/587 (29%), Positives = 293/587 (49%), Gaps = 75/587 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ E SA G++ LF +L T G R L A L +PL D +
Sbjct: 287 LQLDATAIRSLELFES-RSARAGST-----LFSVLDETACALGRRRLEAWLRRPLVDRDR 340
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++ L + L L + +++ ++V + +
Sbjct: 341 IEARLDAVEALFDDALARADLRDHLSS------------VYDLERLVARV------SRER 382
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P + L S LL+++ S+ E E +R +G+ + D
Sbjct: 383 ADARDLRSLKTTLDRVPEIRDALVGTDSDLLSDLRDSLDELED---VRDLVGDAVVSDPP 439
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G D LD R + E V NL + +E + +L++ +N
Sbjct: 440 Q-------EITEGGVIADGFDAELDDVRGTAEAGREWVSNLEAREQERTGIDSLEVGYNQ 492
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE---- 291
G+Y+ + + ++ ++P + Q +K+ + L E L +++ A E
Sbjct: 493 VHGYYIEVTNPNLD-RVPDDYQRRQTLKNSERFYTPELKEREDEILRASDRADALEYDLF 551
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
C +R ++ E A+ DA+ D+ VL LA+V D Y RP
Sbjct: 552 CEVRADVATESARVQAVADAL-ADLDVLRTLADVAVTND-----------------YARP 593
Query: 347 HF-----TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQ 401
F E+ + ID GRHP++E ++F+PN + ++ +VTGPNMSGKSTY++Q
Sbjct: 594 EFHAGDTDESAGIRIDAGRHPVVERAQDEFVPNPADLPR-GSVALVTGPNMSGKSTYMRQ 652
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
V L+ +LAQ+G +VPA + + V+DR+FTR+G D++ STFM EM E ++ N +
Sbjct: 653 VALVTLLAQVGSFVPAKSARLPVLDRVFTRIGASDDIAGGQSTFMREMSELTEILHNATG 712
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILH 520
SL+++DE+GR TS++DG AIA + E L + A T+FA+H +L++ A V LH
Sbjct: 713 DSLVLLDEVGRGTSTADGLAIARAATEFLHDEVGATTLFATHYHDLTDAADDRAGVFNLH 772
Query: 521 FYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
F R+ + F + DGP YG+ +A++AG+P++V+E AR++
Sbjct: 773 FTAARRDGEVTFLHSVADGPSS-SSYGVEVAQLAGVPASVVERARTL 818
>gi|302338534|ref|YP_003803740.1| DNA mismatch repair protein MutS [Spirochaeta smaragdinae DSM
11293]
gi|301635719|gb|ADK81146.1| DNA mismatch repair protein MutS [Spirochaeta smaragdinae DSM
11293]
Length = 855
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 177/578 (30%), Positives = 293/578 (50%), Gaps = 44/578 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D ++ RNLEI+ + A + +LF +L T+T G R LR+ LL PL+D++
Sbjct: 259 VGLDESTQRNLEIVSNMRDA-----SNAYTLFQVLDKTRTAPGARTLRSRLLHPLRDMKA 313
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKS 119
I RLD ++EL N+ + L + L +++++++ L +AK
Sbjct: 314 ITLRLDKVEELYRNQMILSALRKKLSG------------VLDLERLSARIALGKAHAKDL 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ S+I T + + ++ S++LA RS E + K + I +D
Sbjct: 362 AAVASTI----TVILEIEQEFGEMRVPGSWMLAQENRSAAEE-----LEKELRRAICDD- 411
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V T+ I+ G LD R D+ + + + + + NLK+ +N
Sbjct: 412 -----PSVLLTEGNM-IREGYSEELDRLRLLKRDSRKVLADYLEDEKNRSGIANLKIKYN 465
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G ++ + ++ +P FI+ +T L L SA+ + +
Sbjct: 466 KIIGHFIEVTKANLS-LVPDHFIRRQSLVGAERFTTERLGELETELNSASEKMIQLEKEL 524
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+L ++ + VL LAE +C +D F V Y RP +AI G
Sbjct: 525 FLSLRESCARRLPVLHTLAEYICDIDF----FQALAYAATVHGYVRPDINTGNDIAIREG 580
Query: 360 RHPILESIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHP++E+ N +FIPN+I I + ++TGPNM+GKSTYL+Q LIV++AQ G +VPA
Sbjct: 581 RHPVVEAGLNAGEFIPNSIDIGAKKSFALITGPNMAGKSTYLRQTALIVLMAQCGSFVPA 640
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+TI +VDRIF R+G DNL STF+ EM ETA++++ SE+SL++MDE+GR TS++
Sbjct: 641 MEATIGIVDRIFCRVGASDNLARGESTFLVEMNETAYILRTASEKSLVIMDEVGRGTSTT 700
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
DG AIAW+ E L+ K T+FA+H L+EL + +++ L V +R+ F +++
Sbjct: 701 DGLAIAWAVSEALIERKTKTLFATHFHELTELQ--HDSIQKLRLMVKEEGDRVIFLKKVE 758
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+G YG+ +A +AG+P V+ AR I + ++
Sbjct: 759 EGC-AAGSYGIHVASLAGVPDPVLSRARQILGELEHRD 795
>gi|385809871|ref|YP_005846267.1| MutS family mismatch repair protein [Ignavibacterium album JCM
16511]
gi|383801919|gb|AFH48999.1| MutS family mismatch repair protein [Ignavibacterium album JCM
16511]
Length = 864
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 191/609 (31%), Positives = 315/609 (51%), Gaps = 70/609 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++ RNLEII + GT ++ SL +L T+T G RLL+ + PL+D+
Sbjct: 258 MILDYSTKRNLEIITSMQE---GT--REGSLISILDKTQTAMGGRLLKKWISAPLRDVNA 312
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RL+ ++ L+ + L L L++ + +R++ C T + N ++
Sbjct: 313 INQRLNAVENLIKEKSLRKDLINQLKEI-GDLERLISKVC------TGRA----NPRE-- 359
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE--D 178
II +KT+L +P++ ++L L + S+ K + E++++ D
Sbjct: 360 -----IIAVKTSLKKIPVVKELLNKLSDSTLKKVGDSL----------KDLTELVEKISD 404
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+ P A + IK G LD R E + NL K RE +P+LK+ F
Sbjct: 405 AIIDSPP--ASLTEGGIIKSGFSPELDELREIAFHGKEWISNLQQKERERTGIPSLKVGF 462
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECY-- 293
NN G+Y+ I + + K+P+ +I+ N+ T EL + + + GE
Sbjct: 463 NNVFGYYIDISNAH-KSKVPADYIRKQTLVNSERYITPELKTFEEKILHAEEKIGELEYQ 521
Query: 294 ----IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
IR + LEA ++I+ + A ++ +LD+ + SFA Y +P
Sbjct: 522 LFNEIRNLVALEA--ESIQTN-------ARLIGMLDVFL-SFAECAEEY---NYVKPEVD 568
Query: 350 ENGPLAIDGGRHPILESI---HNDFIPNNIFISEAANMVIV-TGPNMSGKSTYLQQVCLI 405
E + I GRHP++E I F PN+ ++ + +I+ TGPNM+GKS YL+QV LI
Sbjct: 569 EGNEIEILQGRHPVVERILSPGEKFTPNDCKLNNSDQQIILLTGPNMAGKSVYLRQVGLI 628
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
V+LAQIG +VPA + I +VDRIFTR+G DN+ + STF+ EM+E A ++ N + +SLI
Sbjct: 629 VLLAQIGSFVPASKAKIGIVDRIFTRVGASDNITAGESTFLVEMQEAANILNNATSKSLI 688
Query: 466 VMDELGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFY 522
++DE+GR TS+ DG +IAW+ E+L + A T+FA+H L+E+A ++P +K ++
Sbjct: 689 LLDEIGRGTSTFDGISIAWAITEYLHENPDVAAKTLFATHYHELNEMADLFPRIK--NYK 746
Query: 523 VVIRNNRLDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
V +R F + P H YG+ +A +AGLP V A+ I + + KE+ E+
Sbjct: 747 VEVREYDDKVIFLHRVNPGRADHSYGIQVAMMAGLPVFVTNRAKEILNNLESKELTPYEV 806
Query: 582 NCLQYKQIQ 590
+ K+++
Sbjct: 807 KKERLKKLK 815
>gi|312135299|ref|YP_004002637.1| DNA mismatch repair protein muts [Caldicellulosiruptor owensensis
OL]
gi|311775350|gb|ADQ04837.1| DNA mismatch repair protein MutS [Caldicellulosiruptor owensensis
OL]
Length = 863
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 191/610 (31%), Positives = 307/610 (50%), Gaps = 83/610 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID + RNLE+ E + +KK SL +L TKT G+RLL+ + +PL D+
Sbjct: 254 LQIDINTKRNLELTESIIQ-----RSKKNSLLGILDQTKTSMGSRLLKKWIERPLIDVIE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD +++L S+ + + + L + + +R+ F +K NAK
Sbjct: 309 INRRLDSVEQLKSSYSILVQIEELLSRM-YDIERLSSKFAYKNV----------NAK--- 354
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEK-YASIRKRIGEVIDEDV 179
++ LK +++ LP L K+L + LL IY + E YA + I E
Sbjct: 355 ----DLLSLKRSIEVLPALKKLLSSFSAQLLKEIYEGLDTLEDIYALVDSSINE------ 404
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
A V ++ IK G + +D R ++ E + K R + NL++ +N
Sbjct: 405 -GAPVTL----KEGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIKNLRIGYN 459
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-------- 291
G+Y+ + + +P +I+ N T EL L A +
Sbjct: 460 KVFGYYIEVTKSNY-SLVPDRYIRKQTLANAERYVTEELKKLEDEILGADQKLIELEYQL 518
Query: 292 -CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFT 349
C IR I EA ++ I++ S + +L +VLC SFA +D Y RP+
Sbjct: 519 FCEIRDRI--EAQIERIQKTASYIAIL-DVLC-------SFARI----AIDNEYVRPNVY 564
Query: 350 ENGPLAIDGGRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIV 406
+ I GRHP++E + +FIPN+ + + N ++I+TGPNM+GKSTY++QV LIV
Sbjct: 565 LGDKIYIKNGRHPVVEKMIGRGNFIPNDTELDQVENRILIITGPNMAGKSTYMRQVALIV 624
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
I+AQ+GC+VPA + I +VD+IF+R+G D++ S STFM EM E A +++N + +SLI+
Sbjct: 625 IMAQMGCFVPADEAHIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLII 684
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYV 523
DE+GR TS+ DG +IAW+ E++ + A T+FA+H L+EL P VK
Sbjct: 685 FDEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVK------ 738
Query: 524 VIRNNRLDFKFQLKDGP--RHV------PHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
N R+D K + K+ R + YG+ +A +AG+P V++ A I ++ + +
Sbjct: 739 ---NYRVDVKEEGKNVIFLRKIVRGGCDSSYGIHVARLAGIPEDVLKRAEEILKQLEEAD 795
Query: 576 VKRMEINCLQ 585
+ R I L+
Sbjct: 796 INRKSIRKLR 805
>gi|414590261|tpg|DAA40832.1| TPA: hypothetical protein ZEAMMB73_919183 [Zea mays]
Length = 168
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 110/144 (76%), Positives = 134/144 (93%)
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L+D IR D+++LTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP FT++GP+AI+ GR
Sbjct: 10 DGLIDKIRGDIAILTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPEFTDDGPMAINAGR 69
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPILE++H +F+PNNIF+SEA+NMV+V GPNMSGKSTYLQQ+CLIVILAQIGCYVPA F+
Sbjct: 70 HPILETLHTNFVPNNIFLSEASNMVLVMGPNMSGKSTYLQQICLIVILAQIGCYVPAQFA 129
Query: 421 TIRVVDRIFTRMGTVDNLESNSST 444
++RV+DRIFTR+G DN+E+NSST
Sbjct: 130 SLRVLDRIFTRIGNGDNVENNSST 153
>gi|423082694|ref|ZP_17071283.1| DNA mismatch repair protein MutS [Clostridium difficile
002-P50-2011]
gi|423087012|ref|ZP_17075402.1| DNA mismatch repair protein MutS [Clostridium difficile
050-P50-2011]
gi|357545261|gb|EHJ27236.1| DNA mismatch repair protein MutS [Clostridium difficile
050-P50-2011]
gi|357547812|gb|EHJ29687.1| DNA mismatch repair protein MutS [Clostridium difficile
002-P50-2011]
Length = 947
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 181/587 (30%), Positives = 305/587 (51%), Gaps = 55/587 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + NLE+ + + + KK SL H+L T T G RLLR + +PL +
Sbjct: 265 MVLDMFTRTNLELTQTIRG-----NKKKGSLLHVLDKTSTAMGGRLLRKYVEEPLINKSK 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++E+ + L L+ L+ + +R+ F+ +VT K L
Sbjct: 320 IENRLDVIEEIKDDFILREDLNDILKNIY-DIERICGKIAFE--RVTPKEL--------- 367
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I LK +++ LP L + + + +L + V E +K I I E I E+
Sbjct: 368 ------IHLKNSIEKLPNLKDTINLSNAKILK---KYVSEMDKLDDIYNLIDEAILEE-- 416
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK L R + + V + N+ RE+ + +LK+ FN
Sbjct: 417 ----PTIT-IKDGNIIKSDFSDELKELREISKNGAFLVKEIENREREKTGVKSLKIGFNK 471
Query: 241 RQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT--- 296
G+Y+ I + Q KL T+I+ N T EL + K E I++
Sbjct: 472 VFGYYIEITKANFKQAKLDETYIRKQTLSNAERYITPELKE--IEEKILHAEEKIKSLEY 529
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPL 354
EI +E + D I +++ + +A+++ +D+ V+ + AH ++ Y +P EN L
Sbjct: 530 EIFVE-IRDTIYKNIDRIQKVAKIIANIDVFVSLATVAH------INNYVKPAINENNKL 582
Query: 355 AIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQI 411
I GRHP++E+I +F+PN+ +++ N++ I+TGPNMSGKSTY++Q +I ++A I
Sbjct: 583 DIRNGRHPVVENIVGEENFVPNDTYLNRGENIINIITGPNMSGKSTYMRQTAIIALMAHI 642
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + I ++DRIFTR+G D+L STFM EM E + +++N +ERSL+++DE+G
Sbjct: 643 GSFVPAESADIPILDRIFTRVGASDDLSQGQSTFMVEMNEVSLILKNATERSLVILDEIG 702
Query: 472 RATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS+ DG ++AWS E++ +++ T+FA+H L++L + VK ++ + ++ +
Sbjct: 703 RGTSTYDGISLAWSIVEYIQKNIRCKTLFATHYHELTDLEEEFKEVK--NYSIAVKEDGE 760
Query: 531 DFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F K P+ YG+ +A++A LP VIE A+ I + K V
Sbjct: 761 GIIFLRKIIPQGADKSYGIYVAKLAKLPDEVIERAKYILKDLEKNHV 807
>gi|332638521|ref|ZP_08417384.1| DNA mismatch repair protein MutS [Weissella cibaria KACC 11862]
Length = 880
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 179/586 (30%), Positives = 297/586 (50%), Gaps = 55/586 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D S NLE+ L T + +L +L TKT G R L+ L QPL D ET
Sbjct: 254 LKLDRNSRANLELTVNLR-----TQQRSGTLLWLLDNTKTAMGGRALKQWLEQPLLDRET 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKS 119
I R D + EL+ + FF R +ET + +++ +V N +
Sbjct: 309 IEQRYDKIGELLKD---FFS-----RAALQET----LKSVYDLERLAGRVAYGTANGR-- 354
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ L+ +L +P + L D + ++ R + + + I K I I E+
Sbjct: 355 -----DLLQLRNSLRQVPDIMVTLGDLDPAVFGDLLRRI---DPVSDIEKLISTAIAEE- 405
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P ++ T I+ G + LD R + + + L K R E + +LK+ FN
Sbjct: 406 -----PPISVTDGGV-IRAGYNTRLDEYRSVMKNGKQWLAELEAKERSETGISSLKIGFN 459
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYI 294
G+Y+ + +I P + + N T EL L KS+ E +
Sbjct: 460 KVFGYYIEVTKANIDKLDPDRYTRKQTLVNAERFITPELKDREQMILEAETKSSDLEYQL 519
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFTENGP 353
TE+ + I+ +++ + LA L LD++ +++T D ++TRP T+
Sbjct: 520 FTEVR-----EQIKNNITRIQKLAATLAELDVL-----QSLATVAEDYKFTRPELTDKQR 569
Query: 354 LAIDGGRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
L I GRHP++E + H ++ N++F+ E ++++TGPNMSGKSTY++Q+ L V++AQI
Sbjct: 570 LVIKDGRHPVVEKVLGHQSYVANDVFMDEDETIMLITGPNMSGKSTYMRQLALTVVMAQI 629
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G YVPA + + + D+IFTR+G D+L S +STFM EM E +QN ++RSLI+ DELG
Sbjct: 630 GSYVPASEAELPIFDQIFTRIGAADDLISGNSTFMVEMSEANTAIQNATKRSLILFDELG 689
Query: 472 RATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R T++ DG A+A + EH+ + KA T+F++H L+ L+ PN++ +H N L
Sbjct: 690 RGTATYDGMALAQAIIEHVHNNTKAKTLFSTHYHELTALSDELPNLRNVHVGATEENGEL 749
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F ++ GP YG+ +A++AGLP ++I+ A I + + ++V
Sbjct: 750 VFSHKVLTGPAD-QSYGINVAKLAGLPDSLIDRAADILANLEAQDV 794
>gi|291546135|emb|CBL19243.1| DNA mismatch repair protein MutS [Ruminococcus sp. SR1/5]
Length = 872
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 183/587 (31%), Positives = 298/587 (50%), Gaps = 55/587 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID++S RNLE++E + K+ SL +L TKT G R LR+ + QPL D E
Sbjct: 261 MLIDSSSRRNLELVETMRE-----KQKRGSLLWVLDKTKTAMGARTLRSYVEQPLIDAEE 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL L+EL + + ++L + +R++ +K + +
Sbjct: 316 IEKRLGALEELNAKPMDRDEIREYLNPI-YDLERLISRISYK-------------SANPR 361
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L+S ++L+ LP + ++L + +S LL I + + + I I I +D
Sbjct: 362 DLVS----FASSLEMLPYIKQILAEFKSPLLMQINEDM---DPLSDITDLIRNSIADD-- 412
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A+ I+ G + +D RRS D + + L + RE + +LK+ +N
Sbjct: 413 ----PPLAQKDGGI-IREGYNEDVDKFRRSRTDGKKWLSELEARERERTGIKSLKIKYNR 467
Query: 241 RQGFYLSIPH--KDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+ L + + KD+ +P +I+ N T EL L A + Y
Sbjct: 468 VFGYSLEVTNTFKDL---VPEDYIRKQTLTNAERYITQELKDLEDLILGAEDKLYALEFE 524
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ D + +V + A+ + LD+ FA + + RP E G + I
Sbjct: 525 LFSDIRDQVGAEVVRIQRTAKAVAALDV----FASLALVAQRNNFVRPKINETGLIDIRN 580
Query: 359 GRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E I ND FIPN+ ++ + I+TGPNM+GKSTY++Q LIV++AQIG +V
Sbjct: 581 GRHPVVEQMIENDMFIPNDTYLDNHKKRISIITGPNMAGKSTYMRQTALIVLMAQIGSFV 640
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVDRIFTR+G D+L S STFM EM E A +++N + RSL+++DE+GR TS
Sbjct: 641 PADSANIGVVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSRSLLILDEIGRGTS 700
Query: 476 SSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAW+ EH+ + K A T+FA+H L+EL V ++ + ++ D
Sbjct: 701 TFDGLSIAWAVIEHISNTKLCGAKTLFATHYHELTELEGKLSGVN--NYCIAVKEKGDDI 758
Query: 533 KFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F +K G YG+ +A++AG+P +VI+ A+ + ++ ++
Sbjct: 759 VFLRKIVKGGADK--SYGIQVAKLAGVPDSVIQRAKELVEELSDADI 803
>gi|444322301|ref|XP_004181806.1| hypothetical protein TBLA_0G03510 [Tetrapisispora blattae CBS 6284]
gi|387514851|emb|CCH62287.1| hypothetical protein TBLA_0G03510 [Tetrapisispora blattae CBS 6284]
Length = 938
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 182/609 (29%), Positives = 317/609 (52%), Gaps = 39/609 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ ++ +L++IE S+ + K ++ + L T T G R R NLLQPL + +
Sbjct: 309 MLIDSKTIADLQLIENNTSSSSNKNIKNLTVCNYLDKTCTKMGKRCFRNNLLQPLINEKL 368
Query: 61 INTRLDCLDEL-------MSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDV 113
IN R + + EL + E + L L++F + D++ SK+L V
Sbjct: 369 INMRYEAVKELATLCDQDLEGENILEQLRAVLKEF-HDLDKLF-----------SKLLTV 416
Query: 114 DN-AKKSQTLISSIILLKTALDALPLLAKVLK----DAQSFLLANIYRSVCENEKYASIR 168
++ +S ++ +I LKT L A+ L VL SF+L I + + NE IR
Sbjct: 417 NSIGIQSTQKLNYLICLKTNLQAIDNLKNVLNRYADSLNSFILKEITK-ILNNEITQEIR 475
Query: 169 KRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREE 228
I +++D A P + Q+C+A++ G +GLLDI+R+ + ++ + E
Sbjct: 476 VLIDSSLNDDCTWAHSPLDLQNQKCYAVRAGANGLLDISRQIYKKITDEILQEIEDLEEN 535
Query: 229 LKLPNLKLPFNNRQGFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRN 285
L L F+N +G+Y+ I I LPS F+ +V N I C+TL++ LN R
Sbjct: 536 YSLT-LDHSFDNTRGYYIRIKKTTILSNDDNLPSEFLNIVNKKNCIECNTLKVLKLNARL 594
Query: 286 KSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTR 345
K E + +E +E L+ I +S L +++E + +LD++ F + + T Y
Sbjct: 595 KEVISEIILISETVIEELLSNISNKISTLFMVSEAISILDLLT-CFTNNLKTF---NYCI 650
Query: 346 PHFTENGPLAIDGGRHPILESIHNDFIPNNIF-ISEAANMVIVTGPNMSGKSTYLQQVCL 404
P ++ + + RHPILE DFIPN++ I + +++ I+TG NMSGKS L+Q+ L
Sbjct: 651 PVLSD--KIILKNSRHPILERELKDFIPNDVTSIRQTSSLQIITGYNMSGKSVLLKQIAL 708
Query: 405 IVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSL 464
+ I++Q+G +PA ++ + + ++ TR+ +N E NSS F EMKE A+ + +++ +L
Sbjct: 709 LTIMSQMGSPIPADYAMMPIFKKLHTRICN-ENFEVNSSNFSFEMKEMAYFLDDITPETL 767
Query: 465 IVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV 524
+++DELGR +S DGFAI+ + E LL K ++H +N++ + P+V LH
Sbjct: 768 LIIDELGRNSSIYDGFAISLAITEFLLQKKCTVFLSTHFQNIAHILKNKPSVLHLHMAAD 827
Query: 525 I-RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINC 583
+ R+N+L K+ + +V + G+ + P +IE A +I + + ++ C
Sbjct: 828 LSRDNKLKMKYTIGKEYNYVDNPGIKIVSNFFEPE-IIEEAYNIAALLHLEKKSSNPSQC 886
Query: 584 LQYKQIQML 592
+++Q Q+L
Sbjct: 887 TEFEQNQIL 895
>gi|448570136|ref|ZP_21639130.1| DNA mismatch repair protein MutS [Haloferax lucentense DSM 14919]
gi|445723437|gb|ELZ75079.1| DNA mismatch repair protein MutS [Haloferax lucentense DSM 14919]
Length = 921
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 177/587 (30%), Positives = 293/587 (49%), Gaps = 75/587 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ E SA G++ LF +L T G R L A L +PL D E
Sbjct: 288 LQLDATAIRSLELFES-RSARAGST-----LFSVLDETACALGRRRLEAWLRRPLVDRER 341
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD + L + L L + +++ ++V + +
Sbjct: 342 IEARLDAVAALCDDALARADLRDHLSS------------VYDLERLVARV------SRER 383
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P + + L S LL+++ S+ E E +R +G+ + D
Sbjct: 384 ADARDLRSLKTTLDRVPEIREALAGTDSDLLSDLRDSLDELED---VRDLVGDAVVSDPP 440
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G D LD R + E V NL + +E + +L++ +N
Sbjct: 441 Q-------EITEGGVIADGFDAELDDVRGTAEAGREWVSNLEAREQERTGIDSLEVGYNQ 493
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE---- 291
G+Y+ + + ++ ++P + Q +K+ + L E L +++ A E
Sbjct: 494 VHGYYIEVTNPNLD-RVPDDYQRRQTLKNSERFYTPELKEREDEILRASDRADALEYDLF 552
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
C +R ++ E A+ DA+ D+ VL LA+V D Y RP
Sbjct: 553 CEVRADVATESARVQAVADAL-ADLDVLRTLADVAVAND-----------------YARP 594
Query: 347 HF-----TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQ 401
F E+ + ID GRHP++E ++F+PN + ++ +VTGPNMSGKSTY++Q
Sbjct: 595 EFHAGDTDESAGIRIDAGRHPVVERAQDEFVPNPADLPR-GSVALVTGPNMSGKSTYMRQ 653
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
V L+ +LAQ+G +VPA + + V+DR+FTR+G D++ STFM EM E ++ N +
Sbjct: 654 VALVTLLAQVGSFVPAKSARLPVLDRVFTRIGASDDIAGGQSTFMREMSELTEILHNATG 713
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILH 520
SL+++DE+GR TS++DG AIA + E L + A T+FA+H +L++ A V LH
Sbjct: 714 DSLVLLDEVGRGTSTADGLAIARAATEFLHDEVGATTLFATHYHDLTDAADDREGVFNLH 773
Query: 521 FYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
F R+ + F + DGP YG+ +A++AG+P++V+E AR++
Sbjct: 774 FTAARRDGEVTFLHSVADGPSS-SSYGVEVAQLAGVPASVVERARNL 819
>gi|343516975|ref|ZP_08753993.1| DNA mismatch repair protein MutS [Vibrio sp. N418]
gi|342794787|gb|EGU30541.1| DNA mismatch repair protein MutS [Vibrio sp. N418]
Length = 855
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 181/578 (31%), Positives = 287/578 (49%), Gaps = 47/578 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI H+ G +N +L +L T T G+R+L+ L QP++ ++T+N
Sbjct: 266 LDAATRRNLEIT---HNLAGGLTN---TLAEVLDKTATPMGSRMLKRWLHQPMRCVDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ + LF L L++ + +R+L + +
Sbjct: 320 QRLDAISEI-KDLSLFGDLLPVLKQI-GDIERILARLALRSARP---------------- 361
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP LA V+ D LA K A I +V D E +
Sbjct: 362 -RDLARLRHAMQQLPELATVVNDLNHPYLA----------KLAQYAAPIDDVCDLLERAV 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + I G LD R +E + L + RE + LK+ +N
Sbjct: 411 KENPPVVIR--EGGVIASGYSAELDEWRDLADGATEYLDKLEREERERHGIETLKVGYNA 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
GF++ + + +P+ +++ N EL + S+ + +
Sbjct: 469 VHGFFIQV-SRGQSHLVPAHYVRRQTLKNAERYIIPELKEHEDKVLSSKSKALSIEKKLW 527
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L D + + L LA + LD++ N S Y RP T + I GGR
Sbjct: 528 EELFDLLMPHLEPLQNLASAVSQLDVLQNLAERADSLD----YCRPTLTTQPGIDILGGR 583
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + ++ FI N + ++ + M+IVTGPNM GKSTY++Q LI ++A IG YVPA
Sbjct: 584 HPVVEQVMDEPFIANPVALNTSRKMLIVTGPNMGGKSTYMRQTALIALMAHIGSYVPAES 643
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ I ++DRIFTR+G D+L S STFM EM ETA ++ N +ERSL++MDE+GR TS+ DG
Sbjct: 644 AQIGLIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATERSLVLMDEIGRGTSTYDG 703
Query: 480 FAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
++AW+ E L + A T+FA+H L+EL P++ +H V + + F +++
Sbjct: 704 LSLAWASAEFLAKQIGALTLFATHYFELTELPNQIPHLANVHLDAVEHGDSIAFMHAVQE 763
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
G YGL +A +AG+P TVI+ AR+ +++ + V
Sbjct: 764 GAAS-KSYGLAVAGLAGVPKTVIKQARTKLTQLEQLSV 800
>gi|188590144|ref|YP_001921070.1| DNA mismatch repair protein MutS [Clostridium botulinum E3 str.
Alaska E43]
gi|238689654|sp|B2V1M2.1|MUTS_CLOBA RecName: Full=DNA mismatch repair protein MutS
gi|188500425|gb|ACD53561.1| DNA mismatch repair protein MutS [Clostridium botulinum E3 str.
Alaska E43]
Length = 941
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 191/628 (30%), Positives = 318/628 (50%), Gaps = 55/628 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S RNLE+ E + KK SL +L + T G R LR + +PL +
Sbjct: 259 MTIDGNSRRNLELTESIRE-----KTKKGSLLWVLDKSATSMGGRTLRKWIDEPLIVKDE 313
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL ++E+ ++ G ++ LR KE + +++ K+ + + NAK
Sbjct: 314 IEKRLSGVEEVFNS----IGFNEDLRSALKE--------IYDIERIVGKISNKNVNAK-- 359
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ LK++LD LP + K+LKD S LL Y ++ E +R + + I ED
Sbjct: 360 -----DLLSLKSSLDKLPCIKKLLKDTSSELLKGYYENLDE---LIDVRDLLNDSIKED- 410
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + ++ IK G + L+D R+S E + L N+ RE + +LK+ +N
Sbjct: 411 -----PGLG-LKEGNIIKDGYNNLVDELRQSKLHGKEWIAALENREREFTGIKSLKVGYN 464
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I + +I+ N T EL + + + E I E
Sbjct: 465 KVFGYYIEISKSNYNSIPEGRYIRKQTLANAERFITEELKVMEDK-ILGSEEKLINLEYS 523
Query: 300 LEALV-DAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR-YTRPHFTENGPLAID 357
+ + D I +++S L A ++ LD I T++ ++ Y +P NG + I
Sbjct: 524 IFVEIRDKIEKEISRLKKSARIISDLDGI-----STLALVALENDYIKPEINTNGLIKIT 578
Query: 358 GGRHPILESI--HNDFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E + DF+ NN +++ ++++TGPNM+GKSTY++QV LI ++AQ+G +
Sbjct: 579 DGRHPVVEKVIGKGDFVSNNTALNQTDKELLLITGPNMAGKSTYMRQVALITLMAQMGSF 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I + D+IFTR+G D+L STFM EM E + +++N + SL+++DE+GR T
Sbjct: 639 VPATSANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSNSLVLLDEVGRGT 698
Query: 475 SSSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAWS E++ +L+ T+FA+H L +L I P VK V + +
Sbjct: 699 STYDGLSIAWSVIEYITKNKNLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKLKDSVV 758
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQM 591
F ++ +G YG+ +A++AGLP VI AR I + K +IN L M
Sbjct: 759 FLRKIVEGGAD-ESYGIEVAKLAGLPENVINRAREILEDLESKNT--FDINKLS--SCSM 813
Query: 592 LYHAAQRLICLKYSNQDEESIRHALQNL 619
+ + + + N++++ I +A QN+
Sbjct: 814 VSNNTKEIAADSIKNEEDKVISNA-QNI 840
>gi|291538969|emb|CBL12080.1| DNA mismatch repair protein MutS [Roseburia intestinalis XB6B4]
Length = 892
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 189/593 (31%), Positives = 298/593 (50%), Gaps = 67/593 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+++ RNLE++E L K+ SL +L TKT G R LRA + QPL D
Sbjct: 278 MIIDSSTRRNLELVETLRE-----KQKRGSLLWVLDKTKTAMGARTLRAYVEQPLIDKTE 332
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + + EL + L ++L + +R++ ++ T+ D
Sbjct: 333 IELRQEAIGELNDHVITREELREYLNPI-YDLERLITRVTYR----TANPRD-------- 379
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I K ++ LP + +L + LL NI + E+ S+ R +++E +
Sbjct: 380 -----LIAFKNSISMLPPIKSLLDEFDGALLKNIQNDIDAMEELCSLVDR--SIMEEPPI 432
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
R + IK G + +D R + + + L K RE+ + NLK+ +N
Sbjct: 433 SVR--------EGGLIKEGYNEDVDKYRNAKTEGKTWLAELEAKEREKTGIKNLKIKYNK 484
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGE-- 291
G+YL + +KD+ +P F + N T EL L +K + E
Sbjct: 485 VFGYYLEVTNSYKDL---VPDYFTRKQTLANAERYITPELKELEDMILGAEDKLVSLEYD 541
Query: 292 --CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
C +R +I E+V + A+ + LD+ V S A + Y RP T
Sbjct: 542 LFCEVRNKIA---------EEVVRIQRTAKAIANLDVFV-SLAVVADQ---NNYCRPKMT 588
Query: 350 ENGPLAIDGGRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIV 406
+G + I GGRHP++E I ND FI N+ ++ N + I+TGPNM+GKSTY++Q LIV
Sbjct: 589 NSGVIDIKGGRHPVVEKMITNDMFIDNDTYLDNGNNRIAIITGPNMAGKSTYMRQAALIV 648
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQIG +VPA + I +VDRIFTR+G D+L S STFM EM E A +++N + SL+V
Sbjct: 649 LMAQIGSFVPATSAKISIVDRIFTRVGASDDLASGQSTFMVEMNEVANILRNATSNSLLV 708
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYV 523
+DE+GR TS+ DG +IAW+ EH+ + L A T+FA+H L+EL NV V
Sbjct: 709 LDEIGRGTSTFDGLSIAWAVVEHISNPRLLGAKTLFATHYHELTELEGKLNNVHNYCIAV 768
Query: 524 VIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ + + F ++ G YG+ +A++AG+P +VIE A+ I ++ ++
Sbjct: 769 KEKGDDIVFLRKIVQGGAD-KSYGIQVAKLAGVPDSVIERAKEIVEELSANDI 820
>gi|300866162|ref|ZP_07110881.1| DNA mismatch repair protein mutS [Oscillatoria sp. PCC 6506]
gi|300335841|emb|CBN56041.1| DNA mismatch repair protein mutS [Oscillatoria sp. PCC 6506]
Length = 875
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 187/618 (30%), Positives = 299/618 (48%), Gaps = 78/618 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEII+ + N SL + T T G R LR LQPL DI+ I
Sbjct: 306 LDHQTRRNLEIIQTVRDG-----NFHGSLLWAIDKTNTAMGGRALRRWFLQPLLDIKAIR 360
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + EL+ N L L Q LR+ + +++ + A
Sbjct: 361 ARHDTIQELVENNSLRQSLQQLLRQI------------YDIERLAGR------AGSGTAT 402
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE-----VIDE 177
++ L +L+ LP LA V +S L + + + ++G+ ++DE
Sbjct: 403 ARQLVSLADSLEKLPQLANVALQGRSPYLKAL-------QNVPPVLDKLGQNIHAYLVDE 455
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+H + + I+ GI+ LD R + + NL R + NLK+
Sbjct: 456 PPIHLK--------EGGLIRPGINDELDRMRGMASGDQQWLANLEATERTRTGISNLKVG 507
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N G+Y+SI I ++P +I+ N ST EL +R +A +
Sbjct: 508 YNKAFGYYISITKSKID-QVPHDYIRKQTLTNEERYSTEELKEREIRILTAREDLNQLEY 566
Query: 298 ICLEALVDAIREDVSVL------TLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
L +++ E V+ A+VLC L + + Y RP E+
Sbjct: 567 DIFTGLRESVGEQAEVIRNISRAVAAADVLCGLAEVAVYYG----------YCRPTMVES 616
Query: 352 GPLAIDGGRHPILES--IHNDFIPNNIFIS--EAAN---MVIVTGPNMSGKSTYLQQVCL 404
+ I GRHP++E F+PN+ F+ E+ N ++I+TGPN SGKS YL+QV L
Sbjct: 617 REIKIVEGRHPVVEKSLPAGFFVPNSAFLGSEESVNRPDLIILTGPNASGKSCYLRQVGL 676
Query: 405 IVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSL 464
I ++AQ G +VPA +++ + +RIFTR+G VD+L + STFM EM ETA ++ + + +SL
Sbjct: 677 IQLMAQTGSFVPAKSASLGICNRIFTRVGAVDDLATGQSTFMVEMNETANILNHATPKSL 736
Query: 465 IVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYV 523
+++DE+GR T++ DG +IAWS E+L + ++A TIFA+H ++ELA+I PNV V
Sbjct: 737 VLLDEIGRGTATFDGLSIAWSVAEYLANEIRARTIFATHYHEMNELASILPNVANYQVTV 796
Query: 524 VIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK---------K 574
+++ F Q++ G YG+ +AGLP +VIE AR + +I K K
Sbjct: 797 KELPDQIIFLHQVQPGGAD-KSYGIEAGRLAGLPPSVIERARQVMRQIEKHSKIAMGLRK 855
Query: 575 EVKRMEINCLQYKQIQML 592
+K+ E L+ +Q+ +
Sbjct: 856 GIKKQEKQDLEAEQLDIF 873
>gi|448624279|ref|ZP_21670352.1| DNA mismatch repair protein MutS [Haloferax denitrificans ATCC
35960]
gi|445750246|gb|EMA01685.1| DNA mismatch repair protein MutS [Haloferax denitrificans ATCC
35960]
Length = 930
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 175/592 (29%), Positives = 297/592 (50%), Gaps = 62/592 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+IE +H ++ SLF + T T G RLLR L +P +D +
Sbjct: 258 LELDATTQRNLELIETMHG------DRSGSLFDTIDHTVTSPGGRLLREWLTRPRRDRDE 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD ++ L S +E R + + +++ S+ +
Sbjct: 312 LARRLDAVESLASA------------ALARERVREVLDGAYDLERLASR------SASGS 353
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
S ++ ++ L LP LA ++ A S L + R + + A +R + + + E
Sbjct: 354 AGASDLLSVRDTLSVLPALADAIEGTELADSPLAEVVSR--PDRDAAADLRADLDDSLAE 411
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARR-----SFCDTSEAVHNLANKYREELKLP 232
D P TQ G D L D+ R S+ DT LA++ + L
Sbjct: 412 D------PPKTVTQGGLFQTGYDDDLDDLIERHESAKSWLDT------LADREKRAHGLS 459
Query: 233 NLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAA 289
++ + N G+Y+ + K + ++P + Q+ N+ T EL +R + A
Sbjct: 460 HVTVDRNKTDGYYIQV-GKSVADQVPDHYRQIKTLKNSKRFVTEELEEKEREILRLEEAR 518
Query: 290 GECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
G+ E L + + + +L + + +D + + H +TRP T
Sbjct: 519 GDLEYE---LFEELRERVAQHAELLQDVGRTIAEVDALASLATHAAGNG----WTRPELT 571
Query: 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
+ G L I+ GRHP++E+ DF+PN++ + + +IVTGPNMSGKSTY++Q LI +LA
Sbjct: 572 DAGALDIEAGRHPVVETT-TDFVPNDLRMDDDRGFLIVTGPNMSGKSTYMRQAALITLLA 630
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +VPA +T+ VVD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE
Sbjct: 631 QVGSFVPARSATVGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDE 690
Query: 470 LGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
+GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA V +H R+
Sbjct: 691 VGRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTSLADHLDRVANVHVAADERDG 750
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ F + DGP YG+ +A++AG+P V++ A + R+ +E K +E
Sbjct: 751 DVTFLRTVVDGPTD-RSYGIHVADLAGVPRPVVDRAGDVLDRL--REEKAIE 799
>gi|152997735|ref|YP_001342570.1| DNA mismatch repair protein MutS [Marinomonas sp. MWYL1]
gi|189083158|sp|A6W1Q6.1|MUTS_MARMS RecName: Full=DNA mismatch repair protein MutS
gi|150838659|gb|ABR72635.1| DNA mismatch repair protein MutS [Marinomonas sp. MWYL1]
Length = 883
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 184/586 (31%), Positives = 295/586 (50%), Gaps = 61/586 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID + RNLEI L GTSN +L +L T G+RLL+ L P++D+ I
Sbjct: 272 IDGATRRNLEIDINLTG---GTSN---TLVEVLDKCSTPMGSRLLKRWLHTPIRDLNEIQ 325
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + EL N Q + L+K + +R+L + +
Sbjct: 326 ARQQVVAELQQN-QSYNAFEAPLKKV-GDLERILSRVALRSARP---------------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L+ AL+A P + +L +A S L + ++R +I E + A
Sbjct: 368 -RDLLRLRFALEAAPEINGLLANATSERLQEL-----------NLRILAQPIITETLAKA 415
Query: 183 RV---PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V P V R FA G D LD + ++ + + + + +LK+ FN
Sbjct: 416 LVENPPSVVRDGGIFA--KGYDEELDELLALSTNATDFLAEMERSEKARTGISSLKVGFN 473
Query: 240 NRQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
G+Y+ I H D + P +I+ N T EL + + SA + R +
Sbjct: 474 RVHGYYIEISRLHSD---QAPVEYIRRQTLKNAERFITPELKAFEDKALSAKSKSLAREK 530
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
EAL++ + E + L ++ L LD ++N+FA + +T P G + I
Sbjct: 531 ELYEALLEQLNEILGELQTTSQALAQLD-VLNNFAERANAL---SFTCPELHNRGGIQIV 586
Query: 358 GGRHPILES-IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++ES I F+PN++ +++ +++++TGPNM GKSTY++Q+ LI +LA GC+VP
Sbjct: 587 GGRHPVVESVISEPFVPNDLDLNDKRSLLMITGPNMGGKSTYMRQIALITLLAHTGCFVP 646
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++I VVDRIFTRMG+ D+L STFM EM ETA ++ N S+ SL++MDE+GR TS+
Sbjct: 647 AESASISVVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNASKNSLVLMDEVGRGTST 706
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ ++L + LK Y +FA+H L+ LA N +H + + F +
Sbjct: 707 FDGLSLAWAAVDYLANKLKCYVLFATHYFELTTLADQLENAANVHLTATEYEDEIVFLHK 766
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
+ +GP YGL +A++AG+P VI A K+++K +E+
Sbjct: 767 VHEGPAS-QSYGLQVAQLAGVPRDVIGHA--------KQKLKELEV 803
>gi|170727679|ref|YP_001761705.1| DNA mismatch repair protein MutS [Shewanella woodyi ATCC 51908]
gi|238688717|sp|B1KPS7.1|MUTS_SHEWM RecName: Full=DNA mismatch repair protein MutS
gi|169813026|gb|ACA87610.1| DNA mismatch repair protein MutS [Shewanella woodyi ATCC 51908]
Length = 858
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 181/566 (31%), Positives = 286/566 (50%), Gaps = 45/566 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L G SN +L +L T T G+R+L+ + +PL+D + I
Sbjct: 271 LDAATRRNLELTMNLQG---GHSN---TLATVLDNTTTPMGSRMLQRWIHEPLRDRQRIE 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R L+E++ N L+ L L+ + +R+ + NA+
Sbjct: 325 ARQSALEEILEN-GLYDELHPLLKSL-GDVERITARLALR------------NARPR--- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVIDEDVLH 181
LK AL LP + ++L QS L ++ R + E E+ A + I +D
Sbjct: 368 --DFSRLKHALAILPEIQQILARCQSAHLQSLARIISEFPEELALLDSAI---VDNP--- 419
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
P + R +K G + LD R ++ + L + +E + LK+ +N
Sbjct: 420 ---PMLIR--DGGVLKPGYNAELDQWRDLSQGATDYLAELEAREKEATGISTLKVGYNRV 474
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ + ++ +P ++ + N EL + S+ G+ + +
Sbjct: 475 HGYYIEVSRRE-SDLVPLSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEKQLWD 533
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
L D I + L L A+ LD++ N FA T Y RP T+ + I+ GRH
Sbjct: 534 QLFDLILPQLHELQLFAQGAAELDVLAN-FAERADTL---NYQRPVLTDIPGIQIESGRH 589
Query: 362 PILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
P++E + FI N + +S A M+IVTGPNM GKSTY++QV LI ++A IGCYVPA +
Sbjct: 590 PVIEQVSQTPFIANPVTLSPARKMLIVTGPNMGGKSTYMRQVALITLMAHIGCYVPAQSA 649
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
TI VDRIFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR TS+ DG
Sbjct: 650 TIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPKSLVLMDEIGRGTSTYDGL 709
Query: 481 AIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
++AWS E+L ++A T+FA+H L++L + NV +H + + + F ++DG
Sbjct: 710 SLAWSAAEYLAQKIEAMTLFATHYFELTQLPELISNVANVHLDAIEHGDTIVFMHAVQDG 769
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETAR 565
YGL +A +AG+P+ VI A+
Sbjct: 770 AAS-KSYGLQVAALAGVPNPVILAAK 794
>gi|114320641|ref|YP_742324.1| DNA mismatch repair protein MutS [Alkalilimnicola ehrlichii MLHE-1]
gi|122311686|sp|Q0A8K3.1|MUTS_ALHEH RecName: Full=DNA mismatch repair protein MutS
gi|114227035|gb|ABI56834.1| DNA mismatch repair protein MutS [Alkalilimnicola ehrlichii MLHE-1]
Length = 878
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 176/568 (30%), Positives = 280/568 (49%), Gaps = 49/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S RNLE+ L + + +L +L +T G+RLLR L +PL+D T+
Sbjct: 271 IDAASRRNLELERNL------SGGTEHTLASVLDSTVNAMGSRLLRRWLNRPLRDRTTLQ 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAKKS 119
R ++ LM+ E L L + LR + +R+L +P+ +T
Sbjct: 325 ARHQAVEILMA-ESLTEALRRQLRGI-SDVERILARVALGSARPRDLTG----------- 371
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ L LP + L A + L ++ E+ + +R ++D+
Sbjct: 372 ---------LRETLARLPDIQATLTGAGAPRLVDLAAQCGEHPQTLDHLRRA--LVDQP- 419
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R A G D LD R + + L + RE + LK+ +N
Sbjct: 420 -----PVVIRDGGVIA--EGYDATLDELRTLSENADNYLLELEQRERERTGISTLKVGYN 472
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ + +P+ +++ EL + + SA + R ++
Sbjct: 473 RVHGYYIEVTRAQADA-VPAEYVRRQTLKGVERYILPELKAFEDKVLSAREKALAREKVL 531
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L+ ++ D++ L A L LD + +FA + +D Y+RP + L I+ G
Sbjct: 532 YEQLLASLASDLAPLQDTAAALAELDTLA-AFAE--RAQALD-YSRPELRDGAGLRIEAG 587
Query: 360 RHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E S+ F+PN++ + + M+I+TGPNM GKSTY++QV LI ++A IG +VPA
Sbjct: 588 RHPVVEYSLDGPFVPNDLTLDDRRRMLIITGPNMGGKSTYMRQVALITLMAHIGSFVPAR 647
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ VDRIFTR+G D+L STFM EM ETA ++ N + +SL++MDE+GR TS+ D
Sbjct: 648 AASLGPVDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTFD 707
Query: 479 GFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G A+AW+ E L +AYT+FA+H ++ L P +H V R+ F +K
Sbjct: 708 GLALAWATAERLARDQRAYTLFATHYFEMTALPEQCPGASNVHLDAVEHGERIVFLHAVK 767
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
GP YGL +A +AG+P V+E AR
Sbjct: 768 PGPASQ-SYGLQVAALAGVPGPVLEAAR 794
>gi|322371551|ref|ZP_08046097.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus
DX253]
gi|320548842|gb|EFW90510.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus
DX253]
Length = 888
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 179/595 (30%), Positives = 301/595 (50%), Gaps = 61/595 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DA ++ +LE+ A+ G + +L +L T G+R L L +PL + +
Sbjct: 295 MLLDAVALTSLELFS--SRAVHGQDDA--TLVGVLDETACALGSRKLTDWLRRPLLERDR 350
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++E + Q + + LR + +++ S+V + +
Sbjct: 351 IEARLDAVEEWTTTVQAREEVHELLRN------------VYDIERLISRV------SRGR 392
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LK LD +P +A+ ++ +S L ++ ++ E A +R RIG I E+
Sbjct: 393 ANARDLRSLKATLDVVPDIAEAMEGVESPKLRRLHENLDE---MADVRDRIGRAIPEE-- 447
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + T+ IK G D LD R + + +L RE + +LK+ +N
Sbjct: 448 ----PPIEITEGGV-IKSGYDDELDDLRETERSGKAWIDDLEASERERTGIGSLKVGYNQ 502
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL-ELASLNVRNKSAAGE------ 291
G+Y+ + ++ K+P + Q +K+ + L E VR + A E
Sbjct: 503 VHGYYIEVTDPNLD-KVPEDYTRRQTLKNSERFYTPELKEREDEIVRAEQRADELEYDLF 561
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
C +R +A+ E+ + LAE L LD +V + A + Y+RP
Sbjct: 562 CEVR---------EAVAEESERVQSLAETLAELDTLV-ALAEVAAKHG---YSRPEIVPE 608
Query: 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
G + I GRHP++E + F+PN+ + + + ++TGPNM+GKSTY++QV LI ILAQ+
Sbjct: 609 G-IEIRNGRHPVVERTQSSFVPNDTRL-DHDTLAVITGPNMAGKSTYMRQVALITILAQV 666
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + + +VDR+FTR+G D++ STFM EM E A ++ N ++RSLI++DE+G
Sbjct: 667 GSFVPADEARLELVDRVFTRVGASDDIAGGRSTFMVEMTELADILGNATDRSLILLDEVG 726
Query: 472 RATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS++DGFAIA S EH+ + A T+FA+H +L+ +A PN LHF R+ +
Sbjct: 727 RGTSTTDGFAIARSVTEHVHDEIGAKTLFATHHHDLTAVADDLPNAINLHFGATERDGEV 786
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ 585
F + +G + YG+ +A++AG+P +VI ++ + + V E CL+
Sbjct: 787 VFDHHISEGAT-MASYGVEVAQLAGVPESVIRRSKDLLAEDEGDSVD--EGTCLR 838
>gi|88858313|ref|ZP_01132955.1| DNA mismatch repair protein [Pseudoalteromonas tunicata D2]
gi|88819930|gb|EAR29743.1| DNA mismatch repair protein [Pseudoalteromonas tunicata D2]
Length = 859
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 175/565 (30%), Positives = 286/565 (50%), Gaps = 43/565 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + +NLE+ L + + +L +L T T G+RLL+ L P +D +N
Sbjct: 274 LDAATRKNLELTINL------SGDIDNTLAQVLDKTATPMGSRLLKRRLHTPTRDHNELN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+M N LF L++ + +R++ + +++ D+
Sbjct: 328 ARLDAVSEIM-NCGLFNDFYDVLKQI-GDIERIVARLALR----SARPRDLSR------- 374
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ AL L L+ +L S L++I R+ +++ I ++++ ++
Sbjct: 375 ------LRNALQQLHLVQNLLAHTSSNRLSDIKRA-------SAVIPHIQSLLEQAIIE- 420
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G LD R ++ V L K RE + LK+ +N
Sbjct: 421 NPPVLIRDGGVIA--PGYHAELDEWRALSQGATDIVEALEAKERERTGIATLKIGYNRVH 478
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
GFY+ + + ++P +I+ NN EL + + + + E
Sbjct: 479 GFYIEVS-RAYADQVPPEYIRRQTLKNNERYIIPELKEHEDKVLGSQSKALALEKQLYEG 537
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L D + + LA L LD ++N+FA T Y RP +N + I GRHP
Sbjct: 538 LFDQLLPHLKQFQQLAASLSELD-VINNFAERAETL---NYCRPTLIDNQDITIVEGRHP 593
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + ++ FI N ++ M+I+TGPNM GKSTY++Q LIV+LA +GC+VPA +
Sbjct: 594 VVEHVMSEPFIANPTHLAPTRKMLIITGPNMGGKSTYMRQTALIVLLAHVGCFVPASQAN 653
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +VDRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+ DG +
Sbjct: 654 IGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATQHSLVLMDEIGRGTSTYDGLS 713
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+ E+L + A T+FA+H L+ELA P + +H + N+ + FK + DGP
Sbjct: 714 LAWATAEYLAHKISAKTLFATHYFELTELAEQVPGLVNVHLDAIEHNDTIAFKHTVLDGP 773
Query: 541 RHVPHYGLLLAEVAGLPSTVIETAR 565
+GL +A +AG+P +VI+ A+
Sbjct: 774 AS-KSFGLQVAALAGVPKSVIKQAK 797
>gi|389843763|ref|YP_006345843.1| DNA mismatch repair protein MutS [Mesotoga prima MesG1.Ag.4.2]
gi|387858509|gb|AFK06600.1| DNA mismatch repair protein MutS [Mesotoga prima MesG1.Ag.4.2]
Length = 820
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 174/587 (29%), Positives = 296/587 (50%), Gaps = 70/587 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DA++V NL + +K SLF +L T T G R LR LL PL D
Sbjct: 257 MQLDASTVENLNLFR---------LERKGSLFEILDETTTGMGKRRLRQWLLSPLTDRHK 307
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKS 119
I+ RLD + L S+ L L ++ H + +++TS++ D +
Sbjct: 308 IDERLDVVHALYSDRHLLDELREYF------------HSVYDIERITSRLSTDRITPRDL 355
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
Q+L +T+L LP + +++ + +F +R+R+ E+ ++
Sbjct: 356 QSL-------RTSLTVLPYIKELISNETAF---------------DRLRERL-ELFPSEL 392
Query: 180 LHARVPFVARTQQCFA----IKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
R V I+ G D LD R ++ E + + ++ +P+LK
Sbjct: 393 ELLRRSIVDEPSSSIGDGNVIRKGFDAQLDSLRDLLDNSVEKIRAIETSEKKSTGIPSLK 452
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAG 290
+ FN G++L +P K GK+P ++ + N+ T EL L+ K +
Sbjct: 453 VKFNKVFGYFLEVP-KSQSGKVPESYTRKQTLVNSERYITPELKEFEDKILSANEKIQSL 511
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCL--LDMIVNSFAHTISTKPVDRYTRPHF 348
E + +C + L+++++ +L+E+ L L ++ + Y RP F
Sbjct: 512 EKALFLCVCSQ-LMNSLQRLKDAAIVLSEIDALQSLSLVARKY----------NYCRPRF 560
Query: 349 TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
+ +G I RHPI+E DF PN+I + + N IVTGPNMSGKST+++QV L+ I+
Sbjct: 561 SVDGSARISNSRHPIVERFVPDFTPNDISMDSSENFFIVTGPNMSGKSTFIRQVALLSIM 620
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ+G ++PA + + + DR+FTR+G D L S STF+ EM ETA ++ +E SL+++D
Sbjct: 621 AQMGSFIPAKDAMLPIYDRVFTRIGARDELASGKSTFLVEMMETATILSKATEDSLVILD 680
Query: 469 ELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS+ DG +IAW+ E + ++ +TIFA+H L+EL+++YP +K +V
Sbjct: 681 EVGRGTSTFDGISIAWAVSEFIYEAIGCHTIFATHFTELTELSSMYPGIKNKTARIVETE 740
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
+ F ++ +G + H G+ +A++AG+P TV+ A+ I I+K+
Sbjct: 741 KGIIFLHKVINGVANSSH-GIEVAKLAGVPETVLSRAKEILRVISKQ 786
>gi|338729931|ref|YP_004659323.1| DNA mismatch repair protein MutS [Thermotoga thermarum DSM 5069]
gi|335364282|gb|AEH50227.1| DNA mismatch repair protein MutS [Thermotoga thermarum DSM 5069]
Length = 810
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 169/576 (29%), Positives = 296/576 (51%), Gaps = 54/576 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D+T+V +L +IEP K +SLF +L TKT G+RLL++ +LQPL+D + I
Sbjct: 254 LDSTTVEHLNLIEP----------KGKSLFDVLNYTKTSMGSRLLKSWILQPLRDQKEIT 303
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+RLD + + ++ L L ++L K+ R+ + K T K
Sbjct: 304 SRLDKVQAFVEDQILLSELREYLHTV-KDLHRIASRLRYG--KATPK------------- 347
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLA---NIYRSVCENEKYASIRKRIGEVIDEDV 179
++ L+T L+ P + ++L +FL A + +CE E ++ VI E
Sbjct: 348 --DLVALRTTLEVCPQIQQLLLTNDAFLEAENLDCLTDLCE-ELAKALEDEPSNVIGEGK 404
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ I+ G D D + ++ + + + R +PNL++ +N
Sbjct: 405 V---------------IRQGYDKEFDELKDLVYNSEKFLAEYEQRERVLTNIPNLRVGYN 449
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+ G+Y+ + + K+P +I+ N T EL + A + +
Sbjct: 450 SVFGYYIEVTKSHL-SKVPPHYIRRQTLVNAERFVTEELKQFEEKMLHAKELLEKKEKEL 508
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++L E V + +A+ + +D + S A+ + +++YTRP F+ +G L +
Sbjct: 509 FDSLCQKALEKVDKIIAIADFIANIDAL-QSLAYAAN---LNKYTRPKFSNDGKLVLVKS 564
Query: 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
RHPI E +F+PN++ +S + VI+TGPNMSGKST+++QV LI ++AQIG +VPA
Sbjct: 565 RHPIAEKFTENFVPNDLTLSNQESFVILTGPNMSGKSTFVRQVGLIALMAQIGSFVPAEE 624
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ + + DRIF +MG D++ STF+TEM E A ++ ++ SL+++DE+GR TS+ DG
Sbjct: 625 AVLPIFDRIFVKMGVRDDIIGGKSTFLTEMNEIAKIIYQATKDSLVLLDEVGRGTSTFDG 684
Query: 480 FAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
+IAW+ E+L +K IFA+H L+ELA +Y + V+ + +++ F ++ D
Sbjct: 685 ISIAWAISEYLHTKIKCKCIFATHFTELTELANLYDGIVNKTIQVMEQGSQVIFLHKVVD 744
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
G YG+ +A +AG+P+ +++ AR + I K
Sbjct: 745 GVAD-KSYGIDVAAIAGIPAEIVQRAREVLDVIASK 779
>gi|225572115|ref|ZP_03780979.1| hypothetical protein RUMHYD_00409 [Blautia hydrogenotrophica DSM
10507]
gi|225040449|gb|EEG50695.1| DNA mismatch repair protein MutS [Blautia hydrogenotrophica DSM
10507]
Length = 877
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 174/585 (29%), Positives = 300/585 (51%), Gaps = 51/585 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+++ RNLE++E L K+ SL +L T+T G R+LR+ + QPL D E
Sbjct: 266 MLLDSSTRRNLELVETLRE-----KKKRGSLLGVLDKTRTAMGARMLRSYVEQPLIDKEK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++EL N L L ++L + +R++ +K N +
Sbjct: 321 IEERLDAIEELNQNALLREELREYLGPI-YDLERLVGRISYKSA----------NPR--- 366
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ +++L LP L ++L++ S LL I+ + E+ ++ + +++E L
Sbjct: 367 ----DLVAFRSSLKMLPYLRELLREFHSPLLMQIHERMDAMEELENLVSKA--IVEEPPL 420
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + IK G + +D RRS + + + L + RE + ++K+ +N
Sbjct: 421 AMKDGGI--------IKDGYNEEVDNYRRSKSEGKQWLTQLEARERERTGIRSMKIKYNR 472
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+YL + + + ++P +I+ N+ T EL L A + Y
Sbjct: 473 VFGYYLEVTNS-FKDQVPEDYIRKQTLSNSERYVTPELKELENLILGAEDKLYALEYELF 531
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ D + +V + A+ + LD++ A + YTRP G + I GR
Sbjct: 532 CQVRDTVGREVVRIQKTAKAVATLDVL----ASLALVAERNNYTRPKINTQGVIDIKNGR 587
Query: 361 HPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E I ND FI N+ ++ + ++TGPNM+GKSTY++Q LIV++AQ+G +VPA
Sbjct: 588 HPVVEQMIENDMFIANDTYLDNNKKRISVITGPNMAGKSTYMRQSALIVLMAQLGSFVPA 647
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I +VDRIFTR+G D+L S STFM EM E A +++N + +SL+++DE+GR TS+
Sbjct: 648 DKANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATAKSLLILDEIGRGTSTF 707
Query: 478 DGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG +IAW+ EH+ + L A T+FA+H L+EL V ++ V ++ D F
Sbjct: 708 DGLSIAWAVIEHISNPKILGAKTLFATHYHELTELEGKISGVN--NYCVAVKEKGDDIVF 765
Query: 535 Q---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+K G YG+ +A +AG+P +V++ A+ + + ++
Sbjct: 766 LRKIVKGGADR--SYGIQVARLAGVPESVLDRAKELVEELVDSDI 808
>gi|389846000|ref|YP_006348239.1| DNA mismatch repair protein [Haloferax mediterranei ATCC 33500]
gi|448616384|ref|ZP_21665094.1| DNA mismatch repair protein MutS [Haloferax mediterranei ATCC
33500]
gi|388243306|gb|AFK18252.1| DNA mismatch repair protein [Haloferax mediterranei ATCC 33500]
gi|445751039|gb|EMA02476.1| DNA mismatch repair protein MutS [Haloferax mediterranei ATCC
33500]
Length = 909
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 173/583 (29%), Positives = 297/583 (50%), Gaps = 60/583 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E +H ++ SLF + T T G RLLR L +P +D +
Sbjct: 258 LELDATTQRNLELTETMHG------DRSGSLFDTIDHTVTSPGGRLLREWLTRPRRDRDE 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++ RLD + L S +E R + + +++ S+ A
Sbjct: 312 LSRRLDAVQSLASA------------ALARERVREVLDGAYDLERLASR------AASGS 353
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+ ++ ++ LD LP L ++ A S L + R + + A ++ + + + E
Sbjct: 354 AGANDLLSVRDTLDVLPALTDAIEGTELADSPLAEVVSR--PDGDAAAGLQAELADALAE 411
Query: 178 DVLHARVPFVARTQQCFAIKG---GIDGLLD--IARRSFCDTSEAVHNLANKYREELKLP 232
D P TQ KG +DGL++ + +S+ DT LA++ + + L
Sbjct: 412 D------PPKTVTQGGLFQKGYDDELDGLIERHESAKSWLDT------LADREKRQHGLS 459
Query: 233 NLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAA 289
++ + N G+Y+ + K + ++P + Q+ N+ T EL +R + A
Sbjct: 460 HVTVDRNKTDGYYIQV-GKSVADQVPEHYRQIKTLKNSKRFVTEELEEKEREVLRLEEAR 518
Query: 290 GECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
G+ L +RE V+ L + + V++ A + + +TRP T
Sbjct: 519 GDLEYE-------LFQDLRERVAAHAELLQDVGRTIAEVDALASLATHAAGNGWTRPELT 571
Query: 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
+ GPL I+ GRHP++E+ +F+PN++ + +IVTGPNMSGKSTY++Q LI +LA
Sbjct: 572 DAGPLRIEAGRHPVVETT-TEFVPNDLHMDRERGFLIVTGPNMSGKSTYMRQAALITLLA 630
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +VPA +TI VVD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE
Sbjct: 631 QVGSFVPARSATIGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDE 690
Query: 470 LGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
+GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA V +H R+
Sbjct: 691 VGRGTATYDGISIAWAATEYLHNEVQAKTLFATHYHELTTLADHLDRVANVHVAADERDG 750
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+ F + DGP YG+ +A++AG+P V++ A + R+
Sbjct: 751 DVTFLRTVVDGPTDR-SYGIHVADLAGVPRPVVDRAGDVLDRL 792
>gi|261253951|ref|ZP_05946524.1| DNA mismatch repair protein MutS [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417954907|ref|ZP_12597936.1| DNA mismatch repair protein MutS [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260937342|gb|EEX93331.1| DNA mismatch repair protein MutS [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342814478|gb|EGU49421.1| DNA mismatch repair protein MutS [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 859
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 292/578 (50%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T T G+R+L+ L QP++DI+T+N
Sbjct: 271 LDAATRRNLELTQNLAG---GTDN---TLAEVLDHTATAMGSRMLKRWLHQPMRDIDTLN 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E FG + K + +R+L + + D A+
Sbjct: 325 HRLDAISEL--KEAALFGDLHPVLKQIGDIERILARLALRSARPR------DMAR----- 371
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L++++ L + +YA+ ++ E++ E +
Sbjct: 372 ------LRFAMQQLPELSELMGSLNHSYLTKL-------AQYAAPMDQVCELL-ERAIKE 417
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + + RE + LK+ +NN
Sbjct: 418 NPPVVIRDGGVIA--EGYNAELDEWRKLADGATEYLEQMEQDERERHGIDTLKVGYNNVH 475
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 476 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQL--- 531
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L LA + +D++ N S Y RP T+ + I
Sbjct: 532 --WEELFDLLLPHLEQLQNLASAVSQIDVLQNLAERADSLD----YCRPSLTKEPGIHIQ 585
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 586 AGRHPVVEQVMDEPFIANPIDLNPQRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 645
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I VDRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 646 AESAQIGSVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDEIGRGTST 705
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L L + T+FA+H L+EL P++ +H V + + F
Sbjct: 706 YDGLSLAWASAEWLAKELGSMTLFATHYFELTELPNQIPHLANVHLDAVEHGDSIAFMHA 765
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P +VI+ AR+ +++ +
Sbjct: 766 VQEGAAS-KSYGLAVAGLAGVPKSVIKNARAKLTQLEQ 802
>gi|241958096|ref|XP_002421767.1| MutS protein homolog 4, putative [Candida dubliniensis CD36]
gi|223645112|emb|CAX39708.1| MutS protein homolog 4, putative [Candida dubliniensis CD36]
Length = 803
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 180/571 (31%), Positives = 298/571 (52%), Gaps = 31/571 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +VR+LE+++ +S + +L+ L T GTR+LR ++LQP +
Sbjct: 192 MLIDICTVRDLELVD-------SSSERGTTLYSFLNCCLTKMGTRILRTSILQPSTHENS 244
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + + EL+++E + + L+ H C +KV S L+ +
Sbjct: 245 IILRSESVQELINDEDMLINIRSSLK-----------HTC-DLEKVFSTFLEPRGTLNRE 292
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I++IILLKT L ++ K +++ S LL + + + E+E + I E I +D
Sbjct: 293 QEINNIILLKTVLQNTFVIRKSIENVSSHLLVQV-KQILEHENVQHLLAIINEYIRDDCQ 351
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A Q+ AIK G++GLLD++RR E V L K E+L++ ++ F
Sbjct: 352 WANSSTELANQRANAIKSGVNGLLDVSRRIREALLEEVSELVAKLSEKLEIL-MEYRFEP 410
Query: 241 RQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
+GF++ I + DI LP I VK I C+T+EL + R K E I
Sbjct: 411 SKGFFIKIKGDNTDINS-LPEDLINRVKKRKTIECTTIELMKQSSRYKDIVSEITILNST 469
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
++ + I +L +++E + LD++ SFA+ S + YT P F + + I
Sbjct: 470 IVQDMYTNINNYTPILLMVSEAIGTLDLLC-SFAYFTSLQK-SSYTCPEFAK--EVTILR 525
Query: 359 GRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HPIL S ++DFI NN + E + + ++TG NMSGKS YL+Q+ +VI+AQ+GC+VPA
Sbjct: 526 SFHPILGSNNSDFIANNYSCNQELSRIHVITGVNMSGKSVYLRQIAYLVIMAQMGCFVPA 585
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++ +RV + +++R+ + D ++ N+S+F EM ETA ++ + E SLI++DELGR +S +
Sbjct: 586 EYAKMRVFNSLYSRLSS-DTVDINASSFSKEMSETAVILNDSDENSLILIDELGRGSSLT 644
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
DGF+I + E L+ A I +H +++++ V H V N +L+ K+ L
Sbjct: 645 DGFSICLAILEDLICKGATVITTTHFRDIAQVLANKSCVVTAHMETVETNGKLEMKYNLL 704
Query: 538 DGPRHVPHYGLLLAEVAG-LPSTVIETARSI 567
+ YG+ AE + LP +IE +R I
Sbjct: 705 LRRNDIVGYGIRFAETSNLLPQELIEDSRVI 735
>gi|343502330|ref|ZP_08740187.1| DNA mismatch repair protein MutS [Vibrio tubiashii ATCC 19109]
gi|418480067|ref|ZP_13049133.1| DNA mismatch repair protein MutS [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|342815067|gb|EGU49996.1| DNA mismatch repair protein MutS [Vibrio tubiashii ATCC 19109]
gi|384572260|gb|EIF02780.1| DNA mismatch repair protein MutS [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 859
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 182/578 (31%), Positives = 295/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI H+ GT N +L +L T T G+R+L+ L QP++DI+T+N
Sbjct: 271 LDAATRRNLEIT---HNLAGGTDN---TLAEVLDHTATAMGSRMLKRWLHQPMRDIDTLN 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL LF L L++ + +R+L + + D A+
Sbjct: 325 HRLDAISEL-KEVSLFADLHPVLKQI-GDIERILARLALRSARPR------DMAR----- 371
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP LA+ + LA+ Y S +YA+ + E++ E +
Sbjct: 372 ------LRFAMQQLPELAESMSS-----LAHPYLSKLA--QYAAPMDEVCELL-ERAIKD 417
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + + RE + +LK+ +NN
Sbjct: 418 NPPVVIRDGGVIA--EGYNAELDEWRKLADGATEYLEQMEQDERERHGIDSLKVGYNNVH 475
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 476 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQL--- 531
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + +A + +D++ N S Y RP T+ + I
Sbjct: 532 --WEELFDLLLPHLEQMQNVASAVSQIDVLQNLAERADSLG----YCRPTLTKEVGIHIQ 585
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 586 AGRHPVVEQVMDDPFIANPIELNPQRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 645
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 646 AESAQIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDEIGRGTST 705
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L L + T+FA+H L+EL P++ +H + + + F
Sbjct: 706 YDGLSLAWASAEWLAKELGSMTLFATHYFELTELPNQIPHLANVHLDALEHGDSIAFMHA 765
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P +VI+ AR+ +++ +
Sbjct: 766 VQEGAAS-KSYGLAVAGLAGVPKSVIKNARAKLTQLEQ 802
>gi|270157146|ref|ZP_06185803.1| DNA mismatch repair protein MutS [Legionella longbeachae D-4968]
gi|289164450|ref|YP_003454588.1| DNA mismatch repair protein MutS [Legionella longbeachae NSW150]
gi|269989171|gb|EEZ95425.1| DNA mismatch repair protein MutS [Legionella longbeachae D-4968]
gi|288857623|emb|CBJ11463.1| DNA mismatch repair protein MutS [Legionella longbeachae NSW150]
Length = 845
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 171/584 (29%), Positives = 303/584 (51%), Gaps = 51/584 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + ++LE+ E + + ++ +L ++ T G+RLL+ L +PLK E+
Sbjct: 261 LQLDAATQKHLELFENI------SGGQENTLISIVDKTACSMGSRLLKRWLGRPLKQHES 314
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + ++E++ +Q L+ LR+ + +R++ K +
Sbjct: 315 IKERQEAIEEIIKLQQSPV-LNHLLRQI-CDVERIVSRIALKSARP-------------- 358
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ +L L LP L+ L++ Q L+ + +KY S + E++ ++
Sbjct: 359 ---RDLFVLNNTLKLLPELSIALENNQGPLITQL-------KKYLSPLPELQELLSAAII 408
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + R A G D LD R E ++ L + ++ L LK FNN
Sbjct: 409 E-NPPMLIRDGGVIA--SGFDEELDELRMLSTRAHEKLNQLEQQEKQYTGLSTLKFGFNN 465
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
QG+Y+ + + K+P + + N T EL + SA + R +
Sbjct: 466 VQGYYIELSKTQAE-KVPPHYHRKQTLKNVERYITPELKQFEEKVLSAQVKALAREKWLY 524
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L+ I+++++ LT LA+ L LD++ S +T P + L+I GR
Sbjct: 525 EHLLLEIQKNINELTYLAQGLAQLDVLTTLAERAQSLN----WTCPKLIPDSQLSIKAGR 580
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + + FI N++++ + N++++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 581 HPVIEHLLQERFIANDLYLDPSQNILLITGPNMGGKSTYMRQTALIVLLAHIGSFVPATA 640
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
T+ +DRIFTR+G D+L S STFM EM ETA +++ + +SL+++DE+GR TS+ DG
Sbjct: 641 VTLGPIDRIFTRIGASDDLASGRSTFMVEMTETAQILRQATHQSLVLIDEIGRGTSTYDG 700
Query: 480 FAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
A+A++ C +L ++KAYT+F++H L+ L +P ++ +H + R+ F ++++
Sbjct: 701 MALAYASCTYLATTIKAYTLFSTHYFELTHLPQQWPCIRNVHLQASLDTGRIVFLYRVEP 760
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN 582
G + YGL +AE+AG+P V++ AR+ +K+M+ N
Sbjct: 761 GYANR-SYGLEVAELAGIPDDVLKIART--------HLKQMQTN 795
>gi|440781999|ref|ZP_20960227.1| DNA mismatch repair protein MutS [Clostridium pasteurianum DSM 525]
gi|440220717|gb|ELP59924.1| DNA mismatch repair protein MutS [Clostridium pasteurianum DSM 525]
Length = 875
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 184/592 (31%), Positives = 307/592 (51%), Gaps = 48/592 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+IDA S RNLE+ E L +KK SL +L T T G R LR + +PL D +
Sbjct: 260 MSIDANSRRNLELTETLRE-----KSKKGSLLWVLDKTSTAMGGRQLRRWIEEPLIDEKA 314
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
IN RLD + E N L L L++ + +++ K+ + NAK+
Sbjct: 315 INQRLDSVQEFTENLSLHEDLKNALKQ------------VYDIERLIGKISTLSVNAKE- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LK +++ LP + +LK +S LL + ++ + K I ++D+ V
Sbjct: 362 ------MIFLKNSIEKLPAIKDILKGCKSSLLKGMQENLDD-------LKDIYNILDKSV 408
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
L + P ++ ++ IK G + +D R++ E + L + REE + +LK+ +N
Sbjct: 409 LDS--PSIS-IKEGNIIKDGYNTEVDELRQAKTHGKEWIAKLESSEREETGIKSLKVGYN 465
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY-IRTEI 298
G+Y+ I ++ +I+ N T EL + + A + I E+
Sbjct: 466 KVFGYYIEITKSNLNLVPEGKYIRKQTLANCERYITEELKQMEEKILGAEEKLINIEYEL 525
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+E + D I + + A++L LD + SFA S + Y +P + +G + I+
Sbjct: 526 FVE-IRDKISTHIDRMKKSAKLLSELDCLC-SFA---SVALENNYCKPQISTDGAIKIEE 580
Query: 359 GRHPILESI--HNDFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E++ F+ N+ I+ ++++TGPNM+GKSTY++QV LIVI++QIG +V
Sbjct: 581 GRHPVVENMLSAGTFVANDTKINTTDEQLMLITGPNMAGKSTYMRQVALIVIMSQIGSFV 640
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I V DRIFTR+G D+L + STFM EM E + +++N + +SLI++DE+GR TS
Sbjct: 641 PAKNAVISVCDRIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATTKSLIILDEVGRGTS 700
Query: 476 SSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E+L + LK T+FA+H L+ L + +K V + + F
Sbjct: 701 TYDGLSIAWSVVEYLCTNKNLKCKTLFATHYHELTALEGVISGLKNYSIAVKQIQDNIVF 760
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCL 584
++ G YG+ +A++AGLP V + A+ I + K K + ++ +
Sbjct: 761 LRKIVSGGAD-QSYGIEVAKLAGLPEKVTKRAKEILEELEKDNDKEVAVDSI 811
>gi|92112754|ref|YP_572682.1| DNA mismatch repair protein MutS [Chromohalobacter salexigens DSM
3043]
gi|122420681|sp|Q1QZX5.1|MUTS_CHRSD RecName: Full=DNA mismatch repair protein MutS
gi|91795844|gb|ABE57983.1| DNA mismatch repair protein MutS [Chromohalobacter salexigens DSM
3043]
Length = 859
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 179/588 (30%), Positives = 287/588 (48%), Gaps = 67/588 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S RNLEI L G N +L +L TT T G+R L+ L +PL+DI I
Sbjct: 267 IDAASRRNLEIDTNLGG---GFDN---TLASVLDTTATAMGSRQLKRWLNRPLRDIAQIQ 320
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCH---FCFKPKKVTSKVLDVDNA 116
+R + CL + + L L K + +R+L + +P+ + +++ D NA
Sbjct: 321 SRQAAVQCLIDADRHATLRDAL-----KAIGDIERILARVALYSARPRDL-ARLRDALNA 374
Query: 117 KKSQTLISSIILLKTALDAL-------PLLAKVLKDAQSFLLANIYRSVCENEKYASIRK 169
+ + + TA+DAL P LA+ L R++ +N
Sbjct: 375 LPALEHDLAELDEGTAIDALKHHIRPYPELAETLS-----------RALVDNP------- 416
Query: 170 RIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEL 229
P V R I G D LD R + + L + RE
Sbjct: 417 ---------------PVVIRDGGV--IGTGFDAELDEYRGLAEHAGDYLVELETRERERT 459
Query: 230 KLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAA 289
L LK+ +N G+Y+ IP + + P+ +I+ N EL + SA
Sbjct: 460 GLVGLKVGYNRVHGYYIEIPRAQAR-EAPAEYIRRQTLKNAERFIIPELKEFEDKALSAK 518
Query: 290 GECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
R ++ + L++ + D+ L A L LD++ ++ + RP +
Sbjct: 519 SRALAREKLLYDGLLETLNVDLQALQGTARALATLDVLACFAERALALD----FVRPRLS 574
Query: 350 ENGPLAIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
+ L I GGRHP++E + + F+PN++ + E ++++TGPNM GKSTY++Q LI +L
Sbjct: 575 DQPGLRIRGGRHPVVEHVSDHPFVPNDLMLDETRRLLVITGPNMGGKSTYMRQAALIALL 634
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
A G VPA + I VDRIFTR+G+ D+L STFM EM ETA ++ N +E SL++MD
Sbjct: 635 AHTGSCVPADEAEIGPVDRIFTRIGSSDDLAGGRSTFMVEMTETATILHNATEHSLVLMD 694
Query: 469 ELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
E+GR TS+ DG ++AW+ EHL+ +A+T+FA+H ++ L Y +V +H +
Sbjct: 695 EIGRGTSTFDGLSLAWASAEHLVERRAFTLFATHYFEMTALTEPYDSVANVHLTAAEHRD 754
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ F ++++GP YGL +A++AG+P V+ AR + + ++EV
Sbjct: 755 GIVFMHRVEEGPAS-QSYGLQVAQLAGVPPRVVARAREKLATLEQQEV 801
>gi|440802309|gb|ELR23238.1| DNA mismatch repair protein [Acanthamoeba castellanii str. Neff]
Length = 343
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 139/361 (38%), Positives = 217/361 (60%), Gaps = 32/361 (8%)
Query: 278 LASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAE------VLCLLDMIVNSF 331
+ SLN R + E ++ T+ +E L+ R+ + + +AE ++C+L M+ N
Sbjct: 1 MISLNARINESMDEIFLLTDRVIEELLSETRKFIGCIYKIAEAVALIDLVCILTMVFNLL 60
Query: 332 AHTIST-KPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGP 390
+T + + +T + T A+ + N+ FI+EA+N ++TGP
Sbjct: 61 RKLNTTIRQICSFT-TYVTVTPSCAL--------------YRKNDTFITEASNFHVITGP 105
Query: 391 NMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMK 450
NMSGKSTYL+QV L+ ILA +GC+VPA F++ R+VDR+FTR+GT D +E N STFM EMK
Sbjct: 106 NMSGKSTYLRQVALLTILAHVGCFVPATFASFRLVDRLFTRIGTSDCMERNCSTFMVEMK 165
Query: 451 ETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELA 510
E AF++QN + SL+++DELGR +S DG +IAW+ CE+LLSL+AYT+ A+H L++L
Sbjct: 166 EMAFIIQNATNHSLMIIDELGRGSSYLDGASIAWAICEYLLSLRAYTLCATHYMQLADLE 225
Query: 511 TIYPNVKILHFYVVIRNNRLD----FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
IYPN K ++++ + ++R+ F + LK+GP + +GL+LAE+AG P + AR
Sbjct: 226 AIYPNAK--NYHLQVEHDRMKLRPTFMYTLKEGPTDLK-FGLVLAEIAGFPPDAVAAARE 282
Query: 567 ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFIDG 626
I ++ + + + E +++ L AQRL+ LK S E +R L NLKE FI
Sbjct: 283 IHRKLQQSDTAKKEKEAQHLRELSQL---AQRLLNLKTSTLSPELLRRYLTNLKEKFIAA 339
Query: 627 R 627
+
Sbjct: 340 Q 340
>gi|291280540|ref|YP_003497375.1| DNA mismatch repair ATPase MutS [Deferribacter desulfuricans SSM1]
gi|290755242|dbj|BAI81619.1| DNA mismatch repair ATPase MutS [Deferribacter desulfuricans SSM1]
Length = 851
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 176/579 (30%), Positives = 305/579 (52%), Gaps = 48/579 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D+ +V LE+++ + K +LF +L KT G RLL+ LL+PL+D+ I
Sbjct: 255 LDSIAVNTLELVKNQRDG-----SVKNTLFQVLNFCKTALGERLLKFTLLRPLRDLNKIK 309
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + ++ + +++L + L+ + +++ S++ +AK++
Sbjct: 310 YRQNVVEAFIFDQELKNNIQNLLKN------------VYDIERIASRL----SAKRANA- 352
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ LK ++ LP + L ++ +L E++ ++ I E+ID+ ++
Sbjct: 353 -RDLVWLKNSIKVLPEIKAYLINSNDPILKEF------GEQFDNLED-IYELIDKSIVDD 404
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + T IK G + +D ++ D++ + + K RE+ + NLK+ +N
Sbjct: 405 --PPLQITAGGI-IKTGFNNHIDELKKVKDDSTTLLARIEQKEREKTGITNLKVKYNKVF 461
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + K+P FI+ N T EL L V+ A + TE+ +
Sbjct: 462 GYYIEVSKSHL-SKVPDYFIRKQTLVNAERFITDELKELEVKILEAESKL---TELEYQQ 517
Query: 303 LVD---AIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
++ + +++ + A + LLDM+++ I + YT+PH ++ + I G
Sbjct: 518 FIEIREKVEKEIERIRSQANKIALLDMLLSFSEAAIRYE----YTKPHINDSNEIKIIEG 573
Query: 360 RHPILESIHND-FIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHP++E N+ F+PN+IFI +E ++I+TGPNM+GKSTYL+ LI ILA G +VPA
Sbjct: 574 RHPVIEQTMNEPFVPNDIFINTEKDRLLIITGPNMAGKSTYLRMTALITILAHTGSFVPA 633
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I +VDRIFTR+G DNL STFM EM ETA ++ N +E+SLI++DE+GR TS+
Sbjct: 634 KEANIGLVDRIFTRIGASDNLAKGESTFMVEMVETANILNNATEKSLIILDEIGRGTSTY 693
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG +IAW+ E++ +KA T+FA+H L+++A VK V N+ + F ++
Sbjct: 694 DGLSIAWAVAEYISKYIKAKTLFATHYHELTDIALTTYGVKNYTIEVREWNDEVIFLRKI 753
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
G YG+ +A++AGLP VI A I + + K E
Sbjct: 754 IPGSAD-RSYGIHVAKLAGLPEEVINRANEILATLEKNE 791
>gi|53805175|ref|YP_113095.1| DNA mismatch repair protein MutS [Methylococcus capsulatus str.
Bath]
gi|81682806|sp|Q60BA1.1|MUTS_METCA RecName: Full=DNA mismatch repair protein MutS
gi|53758936|gb|AAU93227.1| DNA mismatch repair protein MutS [Methylococcus capsulatus str.
Bath]
Length = 854
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 177/579 (30%), Positives = 284/579 (49%), Gaps = 49/579 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
+ +DA S RNLE+ W S + +L +L T + G RLLR L QPL+D
Sbjct: 267 IGLDAASRRNLELD-------WHPSGRAEFTLLGLLDRTGSAMGGRLLRRWLHQPLRDRT 319
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T+ R + EL+++ + F L LR + +R+ K +++ D+
Sbjct: 320 TLMLRQQAIGELLADRR-FEALHDLLRGV-GDVERIAARIALK----SARPRDLST---- 369
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ L ALP L + L +S LL + + + + + + +R ++D+
Sbjct: 370 ---------LRQTLKALPALRETLHGTESALLGELTGRLVDQPELSELLQRA--IVDDP- 417
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + R A G LD R + + L K RE L LK+ +N
Sbjct: 418 -----PQLIRDGGVIAE--GYHAELDELRLLSENADRFLAELEEKEREHTGLGALKVGYN 470
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
QGFY+ +P + P +I+ N T EL + + SA +
Sbjct: 471 RVQGFYIELPRSQAD-RAPVHYIRRQTLKNAERYVTPELKAFEDKVLSARERALSCEKAL 529
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR--YTRPHFTENGPLAID 357
EAL++ + + L A L LD++ N + DR + P + + I
Sbjct: 530 YEALLEILGRWLPALQDCAAGLAELDVLANL------AERADRLNWVAPRLVDAPGIRII 583
Query: 358 GGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + F+PN++ M+++TGPNM GKSTY++Q +IV++A IG +VP
Sbjct: 584 GGRHPVVEQVGGTPFVPNDLAFGPNRRMLVITGPNMGGKSTYMRQAAIIVLMAHIGSHVP 643
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRI+TR+G D+L STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 644 AAEAEIGPIDRIYTRIGASDDLAGGRSTFMVEMTETANILNNATAESLVLMDEIGRGTST 703
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ EHL +AYT+FA+H L+ LA +V +H V +++ F
Sbjct: 704 FDGLSLAWASAEHLARETRAYTLFATHYFELTALAEECEDVGNVHLDAVEHGDKVVFLHA 763
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
+++GP YGL +A +AG+P TVI+ AR ++ ++
Sbjct: 764 VREGPASQ-SYGLQVAALAGVPQTVIDNARRKLEQLERQ 801
>gi|402759278|ref|ZP_10861534.1| DNA mismatch repair protein MutS [Acinetobacter sp. NCTC 7422]
Length = 892
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 174/586 (29%), Positives = 303/586 (51%), Gaps = 53/586 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLINDCQTAMGGRLLSRTLMQPIRDTAVLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQ----FLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
RLD + EQL G + + K + +RVL +++ D+ ++
Sbjct: 330 ARLD------ATEQLLKGYHESPVRLVLKEIGDIERVLSRVALG----SARPRDLVQLRQ 379
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+ + I L+ ALD VLK QS LL + + + + S+ + + I E
Sbjct: 380 A---CAQIPFLRHALDP------VLKTQQSKLLTQLDEELGD---FKSLHQHLMAAIVE- 426
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 427 ----HPPVLLRDGNVIA--EGYDDELDELRKIRDHAGQFLIDLEIKERERTGINTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL + S+ R ++
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKGFEDKVLSSESRALSREKL 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E+L+D +R++++ L +++ + +D++ N FAH ++ + RP F+ + I
Sbjct: 540 LFESLLDELRQNIAHLQMMSAAIAHIDVVAN-FAHQAR---LNNWARPEFSAETGIKIQA 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E+++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G ++PA
Sbjct: 596 GRHPVVEALNKAPFTPNDTFLDTQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFIPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 KSAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L +K +FA+H L+EL + I +++V + N L
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS---EAGIDNYHVTAQELNGNLILLH 772
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+++ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 773 KVQQGPASQSH-GLQVAKLAGIPANVIKEAQKRLKILEKQQHQHLQ 817
>gi|149190609|ref|ZP_01868878.1| DNA mismatch repair protein [Vibrio shilonii AK1]
gi|148835607|gb|EDL52575.1| DNA mismatch repair protein [Vibrio shilonii AK1]
Length = 862
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 189/627 (30%), Positives = 313/627 (49%), Gaps = 56/627 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L + + +L +L T T G+R+L+ + QP++ I+T+N
Sbjct: 275 LDAATRRNLELTQNL------SGGQDNTLAEVLDHTATAMGSRMLKRWIHQPMRCIKTLN 328
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL + L+ LS L++ + +R+L + + D A+
Sbjct: 329 YRLDAISEL-KQDALYTELSPTLKQI-GDIERILARLALRSARPR------DMAR----- 375
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L++AL+ LP LA L+ L + +Y++ + E++ E +
Sbjct: 376 ------LRSALNLLPELALSLETVAHPYLQQL-------AQYSAPMDSLAELL-ERAIKE 421
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R + + L + R+ + LK+ +NN
Sbjct: 422 NPPVVIRDGGVIA--DGYNAELDEWRDLANGATAYLEKLEHDERDRHGIDTLKVGYNNVH 479
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 480 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAIEKKL--- 535
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L LA L LD++ N S Y RP +EN + I
Sbjct: 536 --WEELFDLLLPQLEQLQNLASALSQLDVLQNLAERAESLD----YCRPALSENAGILIQ 589
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + ++ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 590 GGRHPVVEQVMDEPFIANPISLNPERKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 649
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+
Sbjct: 650 AESAEIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTST 709
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+E+ P++ +H V + + F
Sbjct: 710 YDGLSLAWASAEWLATKVGAMTLFATHYFELTEMPNQLPHLANVHLDAVEHGDSIAFMHA 769
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQY---KQIQML 592
+++G YGL +A +AG+P VI+ AR +++ + K + Q Q+ ++
Sbjct: 770 VQEGAAS-KSYGLAVAGLAGVPKAVIKNARQKLTQLEQLGQKPTTNDSPQVDIANQLSLI 828
Query: 593 YHAAQRLICLKYSNQDEESIRHALQNL 619
++ L + D+ + R AL+ L
Sbjct: 829 PEPSEVEEALAQIDPDDLTPRQALEEL 855
>gi|255655930|ref|ZP_05401339.1| DNA mismatch repair protein [Clostridium difficile QCD-23m63]
gi|296450648|ref|ZP_06892401.1| DNA mismatch repair protein MutS [Clostridium difficile NAP08]
gi|296879235|ref|ZP_06903230.1| DNA mismatch repair protein MutS [Clostridium difficile NAP07]
gi|296260492|gb|EFH07334.1| DNA mismatch repair protein MutS [Clostridium difficile NAP08]
gi|296429778|gb|EFH15630.1| DNA mismatch repair protein MutS [Clostridium difficile NAP07]
Length = 947
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 182/590 (30%), Positives = 307/590 (52%), Gaps = 61/590 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + NLE+ + + + KK SL H+L T T G RLLR + +PL +
Sbjct: 265 MVLDMFTRTNLELTQTIRG-----NKKKGSLLHVLDKTSTAMGGRLLRKYVEEPLINKSK 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++E+ + L L+ L+ + +R+ F+ +VT K L
Sbjct: 320 IENRLDVIEEIKDDFILREDLNDILKNIY-DIERICGKIAFE--RVTPKEL--------- 367
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV---IDE 177
I LK +++ LP LKD + A I + +Y S ++ ++ IDE
Sbjct: 368 ------IHLKNSIEKLP----NLKDTINLSNAKILK------EYVSGMDKLDDIYNLIDE 411
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+L P + + IK L R + + V + N+ RE+ + +LK+
Sbjct: 412 AILEE--PTIT-IKDGNIIKSDFSDELKELREISKNGAFLVKEIENREREKTGVKSLKIG 468
Query: 238 FNNRQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
FN G+Y+ I + Q KL T+I+ N T EL + K E I++
Sbjct: 469 FNKVFGYYIEITKANFKQAKLDETYIRKQTLSNAERYITPELKE--IEEKILHAEEKIKS 526
Query: 297 ---EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTEN 351
EI +E + D I +++ + +A+ + +D+ V+ + AH ++ Y +P EN
Sbjct: 527 LEYEIFVE-IRDTIYKNIDRIQKVAKTIANIDVFVSLATVAH------INNYVKPAINEN 579
Query: 352 GPLAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVIL 408
L I GRHP++E+I +F+PN+ +++ N++ I+TGPNMSGKSTY++Q +I ++
Sbjct: 580 NKLDIRNGRHPVVENIVGEENFVPNDTYLNRGENIINIITGPNMSGKSTYMRQTAIIALM 639
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
A IG +VPA ++ I ++DRIFTR+G D+L STFM EM E + +++N +ERSL+++D
Sbjct: 640 AHIGSFVPAEYADIPILDRIFTRVGASDDLSQGQSTFMVEMNEVSLILKNATERSLVILD 699
Query: 469 ELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS+ DG ++AWS E++ +++ T+FA+H L++L + VK ++ + ++
Sbjct: 700 EIGRGTSTYDGISLAWSIVEYIQKNIRCKTLFATHYHELTDLEEEFKEVK--NYSIAVKE 757
Query: 528 NRLDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ F K P+ YG+ +A++A LP VIE A+ I + K V
Sbjct: 758 DGEGIIFLRKIIPQGADKSYGIYVAKLAKLPDEVIERAKYILKDLEKNHV 807
>gi|257066441|ref|YP_003152697.1| DNA mismatch repair protein MutS [Anaerococcus prevotii DSM 20548]
gi|256798321|gb|ACV28976.1| DNA mismatch repair protein MutS [Anaerococcus prevotii DSM 20548]
Length = 868
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 178/581 (30%), Positives = 307/581 (52%), Gaps = 53/581 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ++A++ +NLE+ + L++ + K+ SL ++ T+ G+R++ L +PL D
Sbjct: 273 MELEASTRKNLELSKNLNN-----NTKENSLLSIIDKADTVMGSRMISEYLERPLIDKRK 327
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++ L ++ L +S L + +R++ +K N +
Sbjct: 328 IERRLDIVEVLFNDRILASNISNLLSDV-YDLERLIAKISYKRA----------NGR--- 373
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I LK ++ +P L +L+ ++NI ++ + + I I + I ED
Sbjct: 374 ----DFISLKNSIANIPKLKDILRSYSDTNISNIGENIPD---VSDIFDLIDKAIVED-- 424
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A ++ IK + LD + S A+ NK RE+ + N K+ FN
Sbjct: 425 ----PPIAISEGGI-IKDSYNDELDKLKESSSSAQSALIEYENKEREKTGIKNYKIVFNK 479
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLELAS---LNVRNKSAAGECYIR 295
G+ + I ++ K+P +++ Q +K+ LE S L +++ E I
Sbjct: 480 NNGYSIEITKSNLD-KVPDSYVRKQTLKNQERYTTEKLEEISSLILGGKDRINDLEYKIF 538
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
EI + L + I+ L LA++L +D + N+FA IS + + Y RP E+ +
Sbjct: 539 QEIREKVLKNTIK-----LQALAKILATVDTL-NTFAK-ISLE--NSYVRPVIREDNIIK 589
Query: 356 IDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIG 412
I GRHP++E N+FIPN+ I E N++ I+TGPNM+GKSTY++Q+ +I+ILAQ+G
Sbjct: 590 IKDGRHPVIERKLKENEFIPNDTDIGEENNLIQIITGPNMAGKSTYMRQMAIIIILAQMG 649
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
C+VPA + I + D++FTR+G DN+ STFM EM E + +++N +E S +++DE+GR
Sbjct: 650 CFVPASLAEISICDQVFTRIGASDNISKGESTFMLEMNEVSSILKNSTEHSFVILDEVGR 709
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAY-TIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TSS DG +IA + E+L K T+FA+H L+ L NVK L ++ NN L
Sbjct: 710 GTSSDDGLSIAMAIVEYLSKRKKVKTVFATHFHELTILEKELDNVKNLKIEILEENNNLV 769
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRIT 572
F ++ +G + YG+ +A+++GLP+ +I+ A+ I +++
Sbjct: 770 FLRKISEG-KSDRSYGIEVAKLSGLPNEIIDNAKIIMDKLS 809
>gi|332881597|ref|ZP_08449246.1| DNA mismatch repair protein MutS [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|357045679|ref|ZP_09107314.1| DNA mismatch repair protein MutS [Paraprevotella clara YIT 11840]
gi|332680595|gb|EGJ53543.1| DNA mismatch repair protein MutS [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|355531541|gb|EHH00939.1| DNA mismatch repair protein MutS [Paraprevotella clara YIT 11840]
Length = 902
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 190/607 (31%), Positives = 303/607 (49%), Gaps = 58/607 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +VRNLE+ L+S + G + SL ++ T T G RL+R +L PLKD + +N
Sbjct: 297 LDKFTVRNLEL---LNSMVDGGN----SLLGVIDRTITPMGARLMRRWILFPLKDEKPVN 349
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +D FF +F KE H +++ SKV +
Sbjct: 350 ERLDVVD-------YFFREPEF-----KELISDQLHLMGDLERIISKV------SVGRVS 391
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDEDVL 180
++ LK AL A+ + + A L I ++C ASIR RI + D
Sbjct: 392 PRDVVQLKVALQAIEPIKTACEHASDETLKRIGEQLNLC-----ASIRDRIAREVQNDP- 445
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + I G+D LD R + + + + + E +P+LK+ +NN
Sbjct: 446 ----PLL--VNKGGVIAEGVDRELDELRHIAFEGKDYLLKIQQRETELTGIPSLKISYNN 499
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + HKD K+P+ +I+ N T EL + A + +
Sbjct: 500 VFGYYLEVRNTHKD---KVPADWIRKQTLVNAERYITQELKEYEEKIMGAQDKILVLETK 556
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
LV A+ E + + A +L LD ++ SFA +RY RP ++ L I
Sbjct: 557 LYNDLVLALAEFTPAIQINANLLARLDCLL-SFAQVAQD---NRYIRPVIQDDDVLDIKQ 612
Query: 359 GRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E + +I N++++ +E ++I+TGPNM+GKS L+Q LI ++AQIGC+
Sbjct: 613 GRHPVIEKELPVGEQYIANDVYLDTEKQQIIIITGPNMAGKSALLRQTALITLMAQIGCF 672
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +VD+IFTR+G DN+ STFM EM E A ++ N+S RSL++ DELGR T
Sbjct: 673 VPAESAHIGLVDKIFTRVGASDNISMGESTFMVEMNEAANILNNISSRSLVLFDELGRGT 732
Query: 475 SSSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAW+ E++ K A T+FA+H L+E+ +YP VK + V + ++
Sbjct: 733 STYDGISIAWAIVEYIHENKKGRARTLFATHYHELNEMEKLYPRVKNYNVSVREVDQKVI 792
Query: 532 FKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQ 590
F +L + G H +G+ +A++AG+P +++ A +I + K + N KQ+
Sbjct: 793 FLRKLERGGSEH--SFGIHVAKLAGMPKSIVSRANTILKELESANSKDVMKNSRGAKQVM 850
Query: 591 MLYHAAQ 597
+ Q
Sbjct: 851 QADNGVQ 857
>gi|217967464|ref|YP_002352970.1| DNA mismatch repair protein MutS [Dictyoglomus turgidum DSM 6724]
gi|217336563|gb|ACK42356.1| DNA mismatch repair protein MutS [Dictyoglomus turgidum DSM 6724]
Length = 853
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 179/587 (30%), Positives = 305/587 (51%), Gaps = 51/587 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D+T++++LE++E + ++ SL +L T T G RLL+ LLQPL ++ I
Sbjct: 264 LDSTAIKHLELLETVREG-----QRRGSLIWVLDKTLTSMGARLLKKWLLQPLLNVNAIK 318
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + E + + + + L++ P + +R+ + T K L
Sbjct: 319 KRQEAIKEFLDKDPWRREMEEILKEMP-DLERINSRINYN--TATPKEL----------- 364
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I L+ AL LPLL K L+ A+S L + ++ E + E +D ++ +
Sbjct: 365 ----IYLRQALSFLPLLRKSLEKAESNRLKELKENLPNLEP-------LYEELDRALVES 413
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ + IK G D LD R+ ++ + + NL N+ RE + +LK+ +N
Sbjct: 414 PPSHI---KDGGYIKDGYDPNLDELRKLLRESKDWLINLENRERERTGIKSLKIGYNQVF 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + ++ +PS +I+ N T EL NK E I+ E
Sbjct: 471 GYYIEVTKANL-NLVPSDYIRKQTLVNAERFITPELKEWE--NKILHAEDNIKK--IEEE 525
Query: 303 LVDAIREDV----SVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L +R+ V +T A+ + +D+ + S A Y P T + + I
Sbjct: 526 LFQNLRKKVIKHSKDITTFAQTIAEIDVYI-SLAKAAREY---NYVCPQITNDYEVIIRE 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + F+PN+ ++++ + ++TGPNM+GKSTY++Q+ LI+ILAQ+G ++P
Sbjct: 582 GRHPVIERMLPPGTFVPNDAYLNKDKFIDLITGPNMAGKSTYIRQIALIIILAQMGSFIP 641
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I VVDRIFTR+G D++ S STF+ EMKE ++ + +ERSLI++DE+GR TS+
Sbjct: 642 AKEAKIGVVDRIFTRIGAWDDISSGESTFLVEMKEVGNILSHATERSLIILDEVGRGTST 701
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG +IAW+ E++ + +KA T+FA+H L+EL ++K L V + + F +
Sbjct: 702 YDGISIAWAIVEYIHNKIKAKTLFATHYHELTELEKELKHLKNLSVAVQEKGKDIIFLHK 761
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-KEVKRMEI 581
+ + P YG+ +A++A LP VIE A I + K +E+K+ EI
Sbjct: 762 IAEKPAD-KSYGIYVAQLADLPKEVIERAEKILFELEKGREIKKKEI 807
>gi|409397429|ref|ZP_11248320.1| DNA mismatch repair protein MutS [Pseudomonas sp. Chol1]
gi|409118082|gb|EKM94501.1| DNA mismatch repair protein MutS [Pseudomonas sp. Chol1]
Length = 859
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 179/573 (31%), Positives = 284/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L ++ +L ++ +T G+RLL L +PL++ E +
Sbjct: 270 LDGASRRNLELDVNL------AGGRENTLQSVMDRCQTAMGSRLLTRWLNRPLRNREILE 323
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQL L + +R+L + NA+
Sbjct: 324 ARQDSITCLLEHYRFEQLQPQLKDI-----GDLERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L ++D + L + +S+ + A + R +ID
Sbjct: 367 -----DLARLRDALAALPQLQAGMRDLVAPHLLELAKSISTYPELADLLARA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQYLMDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + + L A L LD++ N ++ RP F E L I+ G
Sbjct: 531 YDELLELLIGHLPPLQESAAALAELDVLSNLAERALNLD----LNRPRFVEQPCLRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 587 RHPVVEQVLETPFVANDLALDDATRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S++SL++MDE+GR TS+ D
Sbjct: 647 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ EHL L+A+T+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAEHLAKLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 798
>gi|257413988|ref|ZP_04744892.2| DNA mismatch repair protein MutS [Roseburia intestinalis L1-82]
gi|257201595|gb|EEU99879.1| DNA mismatch repair protein MutS [Roseburia intestinalis L1-82]
Length = 900
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 189/593 (31%), Positives = 298/593 (50%), Gaps = 67/593 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+++ RNLE++E L K+ SL +L TKT G R LRA + QPL D
Sbjct: 286 MIIDSSTRRNLELVETLRE-----KQKRGSLLWVLDKTKTAMGARTLRAYVEQPLIDKTE 340
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + + EL + L ++L + +R++ ++ T+ D
Sbjct: 341 IELRQEAIGELNDHVITREELREYLNPI-YDLERLITRVTYR----TANPRD-------- 387
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I K ++ LP + +L + LL NI + E+ S+ R +++E +
Sbjct: 388 -----LIAFKNSISMLPPIKSLLDEFDGALLKNIQNDIDAMEELCSLVDR--SIMEEPPI 440
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
R + IK G + +D R + + + L K RE+ + NLK+ +N
Sbjct: 441 SVR--------EGGLIKEGYNEDVDKYRNAKTEGKTWLAELEAKEREKTGIKNLKIKYNK 492
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGE-- 291
G+YL + +KD+ +P F + N T EL L +K + E
Sbjct: 493 VFGYYLEVTNSYKDL---VPDYFTRKQTLANAERYITPELKELEDMILGAEDKLVSLEYD 549
Query: 292 --CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
C +R +I E+V + A+ + LD+ V S A + Y RP T
Sbjct: 550 LFCEVRNKIA---------EEVVRIQRTAKAIANLDVFV-SLAVVADQ---NNYCRPKMT 596
Query: 350 ENGPLAIDGGRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIV 406
+G + I GGRHP++E I ND FI N+ ++ N + I+TGPNM+GKSTY++Q LIV
Sbjct: 597 NSGVIDIKGGRHPVVEKMITNDMFIDNDTYLDNGNNRIAIITGPNMAGKSTYMRQAALIV 656
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQIG +VPA + I +VDRIFTR+G D+L S STFM EM E A +++N + SL+V
Sbjct: 657 LMAQIGSFVPATSAKIGIVDRIFTRVGASDDLASGQSTFMVEMNEVANILRNATSNSLLV 716
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYV 523
+DE+GR TS+ DG +IAW+ EH+ + L A T+FA+H L+EL NV V
Sbjct: 717 LDEIGRGTSTFDGLSIAWAVVEHISNPRLLGAKTLFATHYHELTELEGKLNNVHNYCIAV 776
Query: 524 VIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ + + F ++ G YG+ +A++AG+P +VIE A+ I ++ ++
Sbjct: 777 KEKGDDIVFLRKIVQGGAD-KSYGIQVAKLAGVPDSVIERAKEIVEELSANDI 828
>gi|448386284|ref|ZP_21564410.1| DNA mismatch repair protein MutS [Haloterrigena thermotolerans DSM
11522]
gi|445655235|gb|ELZ08081.1| DNA mismatch repair protein MutS [Haloterrigena thermotolerans DSM
11522]
Length = 889
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 171/586 (29%), Positives = 291/586 (49%), Gaps = 49/586 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E + + SLF + T+T G RLL+ L +P + +ET
Sbjct: 264 VTLDATTQRNLELTETMQG------ERDGSLFATIDHTETSAGGRLLKEWLQRPRRSLET 317
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R +D L + + + D L K ++ D
Sbjct: 318 LEERQASVDALST---AALARDEIQDRLDDAYD--LARLASKASHGSADARD-------- 364
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYAS--IRKRIGEVIDED 178
++ ++ L LP +A+ ++ + + + V ++ A+ +R+ + E + ED
Sbjct: 365 -----LVAVRETLAVLPAVAETIESTPALADSPLSAIVDRPDRAAARELRETLEEAVAED 419
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P TQ ++ G D LD + E + LA + + + L ++ +
Sbjct: 420 ------PPSTVTQGEL-LRKGYDAELDEVIERHEEVREWLDTLAEREKRQHGLSHVTVDR 472
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYIR 295
N G+Y+ + G +P + Q+ N+ +T EL +R + GE +
Sbjct: 473 NKTDGYYIQVGKSAADG-VPDHYEQIKTLKNSKRFTTEELEEKERDILRLEDRRGE--LE 529
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E+ E L D + E ++L + L +D + + H +R+ RP L
Sbjct: 530 YELFAE-LRDEVAERAALLQDVGRALATIDALASLATHAAE----NRWVRPELHRGDDLT 584
Query: 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
I+ GRHP++E +F+PN++ + E ++VTGPNMSGKSTY++QV IV+LAQIG +V
Sbjct: 585 IEQGRHPVVEQT-TEFVPNDVRMDEDRGFLVVTGPNMSGKSTYMRQVACIVLLAQIGSFV 643
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD IFTR+G +D L STFM EM E + ++ +E SL+++DE+GR T+
Sbjct: 644 PAEAAEIGVVDGIFTRVGALDELAQGRSTFMVEMSELSNILHTATEESLVILDEVGRGTA 703
Query: 476 SSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IAW+ E+L + +KA T+FA+H L+ LA P V +H R+ + F
Sbjct: 704 TYDGISIAWAATEYLHNEVKAKTLFATHYHELTGLAENLPRVANVHVAADERDGEVTFLR 763
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
++DGP YG+ +A++AG+P V++ +R + R+ +E K +E
Sbjct: 764 TVRDGPTDR-SYGVHVADLAGVPDPVVDRSREVLERL--REEKAIE 806
>gi|254975573|ref|ZP_05272045.1| DNA mismatch repair protein [Clostridium difficile QCD-66c26]
gi|255092961|ref|ZP_05322439.1| DNA mismatch repair protein [Clostridium difficile CIP 107932]
gi|255314702|ref|ZP_05356285.1| DNA mismatch repair protein [Clostridium difficile QCD-76w55]
gi|255517377|ref|ZP_05385053.1| DNA mismatch repair protein [Clostridium difficile QCD-97b34]
gi|255650483|ref|ZP_05397385.1| DNA mismatch repair protein [Clostridium difficile QCD-37x79]
gi|260683593|ref|YP_003214878.1| DNA mismatch repair protein [Clostridium difficile CD196]
gi|260687253|ref|YP_003218387.1| DNA mismatch repair protein [Clostridium difficile R20291]
gi|384361214|ref|YP_006199066.1| DNA mismatch repair protein mutS [Clostridium difficile BI1]
gi|400927376|ref|YP_001088483.2| DNA mismatch repair protein MutS [Clostridium difficile 630]
gi|423089220|ref|ZP_17077582.1| DNA mismatch repair protein MutS [Clostridium difficile
70-100-2010]
gi|347595678|sp|Q187T6.2|MUTS_CLOD6 RecName: Full=DNA mismatch repair protein MutS
gi|260209756|emb|CBA63548.1| DNA mismatch repair protein [Clostridium difficile CD196]
gi|260213270|emb|CBE04805.1| DNA mismatch repair protein [Clostridium difficile R20291]
gi|328887644|emb|CAJ68852.2| DNA mismatch repair protein MutS [Clostridium difficile 630]
gi|357558356|gb|EHJ39850.1| DNA mismatch repair protein MutS [Clostridium difficile
70-100-2010]
Length = 947
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 184/588 (31%), Positives = 304/588 (51%), Gaps = 57/588 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + NLE+ + + + KK SL H+L T T G RLLR + +PL +
Sbjct: 265 MVLDMFTRTNLELTQTIRG-----NKKKGSLLHVLDKTSTAMGGRLLRKYVEEPLINKSK 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++E+ + L L+ L+ + +R+ F+ +VT K L
Sbjct: 320 IENRLDVIEEIKDDFILREDLNDILKNIY-DIERICGKIAFE--RVTPKEL--------- 367
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRS-VCENEKYASIRKRIGEVIDEDV 179
I LK +++ LP LKD + A I + V E +K I I E I E+
Sbjct: 368 ------IHLKNSIEKLP----NLKDTINLSNAKILKEYVSEMDKLDDIYNLIDEAILEE- 416
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK L R + + V + N+ RE+ + +LK+ FN
Sbjct: 417 -----PTIT-IKDGNIIKSDFSDELKELREISKNGAFLVKEIENREREKTGVKSLKIGFN 470
Query: 240 NRQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT-- 296
G+Y+ I + Q KL T+I+ N T EL + K E I++
Sbjct: 471 KVFGYYIEITKANFKQAKLDETYIRKQTLSNAERYITPELKE--IEEKILHAEEKIKSLE 528
Query: 297 -EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGP 353
EI +E + D I +++ + +A+ + +D+ V+ + AH ++ Y +P EN
Sbjct: 529 YEIFVE-IRDTIYKNIDRIQKVAKTIANIDVFVSLATVAH------INNYVKPAINENNK 581
Query: 354 LAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQ 410
L I GRHP++E+I +F+PN+ +++ N++ I+TGPNMSGKSTY++Q +I ++A
Sbjct: 582 LDIRNGRHPVVENIVGEENFVPNDTYLNRGENIINIITGPNMSGKSTYMRQTAIIALMAH 641
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + I ++DRIFTR+G D+L STFM EM E + +++N +ERSL+++DE+
Sbjct: 642 IGSFVPAESADIPILDRIFTRVGASDDLSQGQSTFMVEMNEVSLILKNATERSLVILDEI 701
Query: 471 GRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++AWS E++ +++ T+FA+H L++L + VK ++ + ++ +
Sbjct: 702 GRGTSTYDGISLAWSIVEYIQKNIRCKTLFATHYHELTDLEEEFKEVK--NYSIAVKEDG 759
Query: 530 LDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F K P+ YG+ +A++A LP VIE A+ I + K V
Sbjct: 760 EGIIFLRKIIPQGADKSYGIYVAKLAKLPDEVIERAKYILKDLEKNHV 807
>gi|407791032|ref|ZP_11138121.1| DNA mismatch repair protein MutS [Gallaecimonas xiamenensis 3-C-1]
gi|407201675|gb|EKE71672.1| DNA mismatch repair protein MutS [Gallaecimonas xiamenensis 3-C-1]
Length = 855
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 176/569 (30%), Positives = 287/569 (50%), Gaps = 52/569 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + +L G+++ +LF +L T G+RLL L +PL+DI+ IN
Sbjct: 272 LDAATRRNLELTQ----SLAGSTDN--TLFSVLDRCATPMGSRLLGRWLHRPLRDIQVIN 325
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +D L +QL + L K + +RV+ + +
Sbjct: 326 GRLDAIDYL--GQQLLDASLKDLMKQVGDLERVMARVALRSARP---------------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVIDEDVLH 181
++ L++AL LP L +L Q L A++ R E Y + D +
Sbjct: 368 -RDLVRLRSALGTLPELGALLAGTQGRL-ASLERDCAPLPELYQLL---------SDAII 416
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
P + R I+ G + LD R ++ + ++ + R+ + LK+ FN
Sbjct: 417 DNPPVLIRDGGV--IRPGFNSELDQYRALSKGATDFLEHIEARERQRTGVSTLKVGFNKV 474
Query: 242 QGFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+++ + Q L PS +++ N EL + ++ G+ +
Sbjct: 475 HGYFIELTRA--QSHLAPSDYVRRQTLKNTERYIIPELKEYEDKVLTSQGKALALEKQLY 532
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E L DA+ + L LA+ LD++ N T+ Y RP + + IDG
Sbjct: 533 EGLFDALHPRLDQLLRLADACAELDLLANLCERGQTLD------YCRPDLQADRGIRIDG 586
Query: 359 GRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E + + FI N + ++++ +M++VTGPNM GKSTY++Q LI ++A IGC VPA
Sbjct: 587 GRHPVVEVVLDSPFIANPVALTDSKHMLMVTGPNMGGKSTYMRQTALITLMAHIGCPVPA 646
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I +VDRIFTR+G D+L S STFM EM ETA ++ N S+RSL++MDE+GR TS+
Sbjct: 647 QSAQIGLVDRIFTRIGAADDLASGRSTFMVEMTETATILNNASDRSLVLMDEIGRGTSTY 706
Query: 478 DGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+ + L ++ T+FA+H L+ LA V+ +H V + + F +
Sbjct: 707 DGLSLAWAVADFLARQSRSLTLFATHYFELTALAEQLDGVENVHLDAVEHGDTVTFMHAV 766
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+ GP +GL +A +AG+P V++ AR
Sbjct: 767 QSGPAS-KSFGLQVALLAGVPKGVVKAAR 794
>gi|341899841|gb|EGT55776.1| hypothetical protein CAEBREN_00729 [Caenorhabditis brenneri]
Length = 844
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 184/633 (29%), Positives = 327/633 (51%), Gaps = 43/633 (6%)
Query: 3 IDATSVRNLEIIEP--LHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
ID S +LEII+ A +KR+L +L T T G RLLR+N+LQP D+
Sbjct: 209 IDFVSWESLEIIDTDDASKARKCQMKQKRTLMSVLNHTVTTNGYRLLRSNVLQPSTDVSI 268
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + ++EL++ QL L + L + E DRV+ C + TS V ++S+
Sbjct: 269 IEARQEAIEELIAKPQLREKLRKTLLR-AHELDRVIA-MCIQ----TSSSWTV---RESE 319
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQ-SFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
I+ II L L + + ++L+ A+ L N ++ + I + E +D+ +
Sbjct: 320 AKINQIIKLVQTLKVIQGIRELLESARVKSQLLNEKIEFLKDPSFDQIMDILLEKVDDTL 379
Query: 180 LHARV-PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL-----PN 233
L R + +C+AI+ + LD+AR+++ E + N+ E+ +
Sbjct: 380 LDGRKNSLHLQNTKCYAIRNFVAVQLDLARQTY---EELIGNVEETGAREIAEHFHNNSS 436
Query: 234 LKLPFNNRQGFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC 292
++L F+ +GF+ + + + +P F++V ++ + ++ ++ + N R + E
Sbjct: 437 VRLSFSQARGFHYTFVTRQAESVTIPRHFLEVFRNRTTVTFNSRQVIACNDRLEQVVAEM 496
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYT-RPHFTEN 351
++ +++ + ++D ++ +SVL + L +D F ++T R T RP F E+
Sbjct: 497 FLASDVIVCDMIDDMQPMISVLYYAMDALSSID-----FLCALATYSELRDTCRPSFGES 551
Query: 352 GPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+I GRHPIL+ + I N+ ++ I+TGPNM+GKSTYL+Q L+ I+AQ
Sbjct: 552 --FSISQGRHPILDWADTEKTITNDTCLTRDRRFGIITGPNMAGKSTYLKQAALLAIIAQ 609
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IGC++PA+++T+ + RIF+RMG D L N S F +EM + A ++Q +RSL+VMDEL
Sbjct: 610 IGCFIPANYATMPIFTRIFSRMGHNDELMRNKSAFASEMSDAASIVQYADKRSLVVMDEL 669
Query: 471 GRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R+TS+ +G AI ++ CE +L LK+YT A+H +++ LA + HF I L
Sbjct: 670 ARSTSTEEGIAITYAICEKVLELKSYTFLATHFLDIAALANFSNAIDNYHFLPQIDERSL 729
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQ 590
K +L G P YG L E++ P V+E A+++ + + Q + ++
Sbjct: 730 K-KHKLLRGQYRGPLYGFELVELSTFPEEVMEHAQTLANELRA-----------QVEDLE 777
Query: 591 MLYHAAQRLICLKYSNQDEESIRHALQNLKESF 623
Y + +R + + S++ ES + ++ E++
Sbjct: 778 RDYESERRRVKVFMSHRLRESAEYFMETYGENW 810
>gi|291536168|emb|CBL09280.1| DNA mismatch repair protein MutS [Roseburia intestinalis M50/1]
Length = 853
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 189/593 (31%), Positives = 298/593 (50%), Gaps = 67/593 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+++ RNLE++E L K+ SL +L TKT G R LRA + QPL D
Sbjct: 286 MIIDSSTRRNLELVETLRE-----KQKRGSLLWVLDKTKTAMGARTLRAYVEQPLIDKTE 340
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + + EL + L ++L + +R++ ++ T+ D
Sbjct: 341 IELRQEAIGELNDHVITREELREYLNPI-YDLERLITRVTYR----TANPRD-------- 387
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I K ++ LP + +L + LL NI + E+ S+ R +++E +
Sbjct: 388 -----LIAFKNSISMLPPIKSLLDEFDGALLKNIQNDIDAMEELCSLVDR--SIMEEPPI 440
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
R + IK G + +D R + + + L K RE+ + NLK+ +N
Sbjct: 441 SVR--------EGGLIKEGYNEDVDKYRNAKTEGKTWLAELEAKEREKTGIKNLKIKYNK 492
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGE-- 291
G+YL + +KD+ +P F + N T EL L +K + E
Sbjct: 493 VFGYYLEVTNSYKDL---VPDYFTRKQTLANAERYITPELKELEDMILGAEDKLVSLEYD 549
Query: 292 --CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
C +R +I E+V + A+ + LD+ V S A + Y RP T
Sbjct: 550 LFCEVRNKIA---------EEVVRIQRTAKAIANLDVFV-SLAVVADQ---NNYCRPKMT 596
Query: 350 ENGPLAIDGGRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIV 406
+G + I GGRHP++E I ND FI N+ ++ N + I+TGPNM+GKSTY++Q LIV
Sbjct: 597 NSGVIDIKGGRHPVVEKMITNDMFIDNDTYLDNGNNRIAIITGPNMAGKSTYMRQAALIV 656
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQIG +VPA + I +VDRIFTR+G D+L S STFM EM E A +++N + SL+V
Sbjct: 657 LMAQIGSFVPATSAKIGIVDRIFTRVGASDDLASGQSTFMVEMNEVANILRNATSNSLLV 716
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYV 523
+DE+GR TS+ DG +IAW+ EH+ + L A T+FA+H L+EL NV V
Sbjct: 717 LDEIGRGTSTFDGLSIAWAVVEHISNPRLLGAKTLFATHYHELTELEGKLNNVHNYCIAV 776
Query: 524 VIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ + + F ++ G YG+ +A++AG+P +VIE A+ I ++ ++
Sbjct: 777 KEKGDDIVFLRKIVQGGAD-KSYGIQVAKLAGVPDSVIERAKEIVEELSANDI 828
>gi|443476208|ref|ZP_21066125.1| DNA mismatch repair protein MutS [Pseudanabaena biceps PCC 7429]
gi|443018833|gb|ELS33019.1| DNA mismatch repair protein MutS [Pseudanabaena biceps PCC 7429]
Length = 893
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 182/586 (31%), Positives = 294/586 (50%), Gaps = 61/586 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + +S L L T T G+R LR LLQPLKDIE IN
Sbjct: 306 LDNQTRRNLEITQTVRDGTFYSS-----LLWALDKTTTGMGSRALRRWLLQPLKDIEAIN 360
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL L L L + + +R+ C + T+ D
Sbjct: 361 ERLDTIAELYKQHSLRKNLRSCLSQI-YDIERL----CSRIGAGTANGRD---------- 405
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+I + +L+ + +A V+ A S L + + S+ ++GE + + ++
Sbjct: 406 ---LIAVAMSLEKMRDVADVVARANSRYLKAL-------QSVPSVLLQLGEQLQKTLVEE 455
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
++ I+ G++ LD R+ D E + + +E + LK+ FN
Sbjct: 456 PPIYITEGN---IIRSGVNEQLDRLRQQSRDDVEWLSAFEKQEKERTGINTLKVGFNKAF 512
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC-------YIR 295
G+Y+SI + + P+ +I+ N T EL R +A E ++
Sbjct: 513 GYYISISRGKSE-QAPTDYIRKQTLTNEERYITPELKERETRILNADSELKQLEYDLFVE 571
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ ++ +R ++ A+VLC L + ++ Y RP T + +A
Sbjct: 572 LRLLAAQQIEPMRT-LATALAAADVLCSLAEVAVTY----------NYCRPQITNDRAIA 620
Query: 356 IDGGRHPILESI--HNDFIPNNIFI-----SEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
I GRHP++E FIPN+ ++ S +++++TGPNMSGKS YL+QV LI ++
Sbjct: 621 IHNGRHPVVEQSLPAGFFIPNSTYLGNDRQSVCPDLIVLTGPNMSGKSIYLRQVGLIQLM 680
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ+G +VPA +T+ + DRIFTR+G VD+L + STFM EM ETA ++ + E SL+++D
Sbjct: 681 AQVGSFVPAEAATLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHAKEHSLVLLD 740
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS+ DG AIAWS E++ + +KA IFA+H L+ELA++ PNV V
Sbjct: 741 EIGRGTSTFDGMAIAWSVAEYIANKIKARGIFATHYHELNELASLLPNVANFQVTVKELE 800
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+ + F Q+++G YG+ + +AGLP+TVI A+ + +I K
Sbjct: 801 DEIIFLHQVQEGGADR-SYGIEVGRLAGLPATVISRAKEVLEQIAK 845
>gi|448482824|ref|ZP_21605595.1| DNA mismatch repair protein MutS [Halorubrum arcis JCM 13916]
gi|445821110|gb|EMA70906.1| DNA mismatch repair protein MutS [Halorubrum arcis JCM 13916]
Length = 931
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 174/587 (29%), Positives = 294/587 (50%), Gaps = 52/587 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+++DAT+ RNLEI E + G SLF + T T G RLLR L +P +D E
Sbjct: 264 VDVDATTQRNLEITETMRGDADG------SLFDTVDHTVTAAGGRLLREWLTRPRRDREA 317
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD ++ L S ++ R + + +++ ++ + ++
Sbjct: 318 LAARLDAVEALASA------------ALARDRVREVLGDAYDLERLAART--TSGSAGAR 363
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+S ++ L LP LA + A S A + R + E+ A++R+ + E + E
Sbjct: 364 ELLS----VRDTLALLPDLADAIGGTALADSPAAAVLDR--VDRERAAALREELAEALAE 417
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D P A+T +K G D LD + + LA + + + L ++ +
Sbjct: 418 D------PPKAKTGGGL-LKAGYDEELDELIERHEEVKSWLDGLAEREKRQHGLSHVTVD 470
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYI 294
N G+Y+ + K + ++P + ++ N+ T ELA +R + A GE
Sbjct: 471 RNKTDGYYIQV-GKSVADQVPEHYREIKTLKNSKRFVTDELAEKEREVLRLEEARGELEY 529
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
E L + + E +L + LD + + H +TRP T L
Sbjct: 530 D---LFEELRERVAERAELLQDAGRAVAELDALASLATHAARRD----WTRPELTTERRL 582
Query: 355 AIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
++ GRHP++E DF+PN++ + +IVTGPNMSGKSTY++Q LI +LAQ G +
Sbjct: 583 DVEAGRHPVVEGT-TDFVPNDLRLDAERGFLIVTGPNMSGKSTYMRQAALIQLLAQAGSF 641
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + +VD I+TR+G +D L STFM EM+E + ++ + + SL+++DE+GR T
Sbjct: 642 VPARAAEVGLVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATADSLVILDEVGRGT 701
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
++ DG +IAW+ E+L + ++A T+FA+H L+ LA P V +H V R+ + F
Sbjct: 702 ATYDGISIAWAATEYLHNEVRARTLFATHYHELTTLADHLPRVANVHVAVDERDGEVTFL 761
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
++DGP + YG+ +A++AG+P V+ A + R+ +E K +E
Sbjct: 762 RTVRDGPTN-RSYGVHVADLAGVPDPVVSRADEVLDRL--REEKAIE 805
>gi|325181249|emb|CCA15663.1| DNA mismatch repair protein mutS putative [Albugo laibachii Nc14]
gi|325181818|emb|CCA16273.1| DNA mismatch repair protein mutS putative [Albugo laibachii Nc14]
Length = 445
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/412 (35%), Positives = 231/412 (56%), Gaps = 43/412 (10%)
Query: 203 LLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFI 262
+LD+ARR++ DT E ++ +Y E L++P ++L + + +G++L+IP +++ PS I
Sbjct: 1 MLDVARRTYLDTIEKIYEHVQEYNETLRIP-VRLAYTDLKGYHLTIPF-NVENA-PSILI 57
Query: 263 Q--VVKHGNN----------------IHCSTLELASLNVRNKSAAGECYIRTEICLEALV 304
+ V K G + C+T EL+SLN R + + Y + ++ L+
Sbjct: 58 KRVVKKKGTTRPLSRSSFWLTILFTVVQCTTKELSSLNDRLQESMVAVYKLSNGVVQDLL 117
Query: 305 DAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP---HFTEN---------- 351
+R S L + E + LLDM++ SF + I+ PV++ +P HF +N
Sbjct: 118 KKLRPYASELYSMVECIGLLDMLL-SFTNMIALSPVEKPCKPSQCHFLQNLSALCIDTRP 176
Query: 352 -----GPLAIDGGRHPILE-SIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCL 404
G L I GRHP++E SI D++ N+++ + +++GPN +GKSTY++ V +
Sbjct: 177 VIFERGNLVIKQGRHPLVERSIRERDYVANDLYFDSMSTFHVISGPNCAGKSTYMKSVAI 236
Query: 405 IVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSL 464
I ILA +GCYVPA + I + DRI TR GT D++E N+STF EM ETAF+++ + SL
Sbjct: 237 ITILAHMGCYVPAVAAFIPLRDRICTRFGTSDDMEENASTFKVEMTETAFILEKATTASL 296
Query: 465 IVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV 524
+++DELGR T+S +G A+AWS E L++ YT FA+H L+ELA++Y N K H
Sbjct: 297 VLIDELGRGTASDEGCALAWSISETLIAKSIYTCFATHFRQLNELASVYINCKCYHLAAS 356
Query: 525 IRNNRLDFKFQLKDGP-RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ + L DG P YG+ A++ GLP +I A I R+ K+
Sbjct: 357 FSETNIRYFHTLNDGNCPEFPKYGIQAAKMCGLPQDIIRDAEEIYDRLQSKQ 408
>gi|255306973|ref|ZP_05351144.1| DNA mismatch repair protein [Clostridium difficile ATCC 43255]
Length = 947
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 184/588 (31%), Positives = 304/588 (51%), Gaps = 57/588 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + NLE+ + + + KK SL H+L T T G RLLR + +PL +
Sbjct: 265 MVLDMFTRTNLELTQTIRG-----NKKKGSLLHVLDKTSTAMGGRLLRKYVEEPLINKSK 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++E+ + L L+ L+ + +R+ F+ +VT K L
Sbjct: 320 IENRLDVIEEIKDDFILREDLNDILKNIY-DIERICGKIAFE--RVTPKEL--------- 367
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRS-VCENEKYASIRKRIGEVIDEDV 179
I LK +++ LP LKD + A I + V E +K I I E I E+
Sbjct: 368 ------IHLKNSIEKLP----NLKDTINLSNAKILKEYVSEMDKLDDIYNLIDEAILEE- 416
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK L R + + V + N+ RE+ + +LK+ FN
Sbjct: 417 -----PTIT-IKDGNIIKSDFSDELKELREISKNGAFLVKEIENREREKTGVKSLKIGFN 470
Query: 240 NRQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT-- 296
G+Y+ I + Q KL T+I+ N T EL + K E I++
Sbjct: 471 KVFGYYIEITKANFKQAKLDETYIRKQTLSNAERYITPELKE--IEEKILHAEEKIKSLE 528
Query: 297 -EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGP 353
EI +E + D I +++ + +A+ + +D+ V+ + AH ++ Y +P EN
Sbjct: 529 YEIFVE-IRDTIYKNIDRIQKVAKTIANIDVFVSLATVAH------INNYVKPAINENNK 581
Query: 354 LAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQ 410
L I GRHP++E+I +F+PN+ +++ N++ I+TGPNMSGKSTY++Q +I ++A
Sbjct: 582 LDIRNGRHPVVENIVGEENFVPNDTYLNRGENIINIITGPNMSGKSTYMRQTAIIALMAH 641
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + I ++DRIFTR+G D+L STFM EM E + +++N +ERSL+++DE+
Sbjct: 642 IGSFVPAESADIPILDRIFTRVGASDDLSQGQSTFMVEMNEVSLILKNATERSLVILDEI 701
Query: 471 GRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++AWS E++ +++ T+FA+H L++L + VK ++ + ++ +
Sbjct: 702 GRGTSTYDGISLAWSIVEYIQKNIRCKTLFATHYHELTDLEEEFKEVK--NYSIAVKEDG 759
Query: 530 LDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F K P+ YG+ +A++A LP VIE A+ I + K V
Sbjct: 760 EGIIFLRKIIPQGADKSYGIYVAKLAKLPDEVIERAKYILKDLEKNHV 807
>gi|390951950|ref|YP_006415709.1| DNA mismatch repair protein MutS [Thiocystis violascens DSM 198]
gi|390428519|gb|AFL75584.1| DNA mismatch repair protein MutS [Thiocystis violascens DSM 198]
Length = 869
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 183/624 (29%), Positives = 297/624 (47%), Gaps = 48/624 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ E L + + +L +L T T G+RLLR L +PL+D +
Sbjct: 279 LDAATRRNLELTESL------SGRAEHTLAGVLDRTATAMGSRLLRRWLHRPLRDRIAVR 332
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L++ L L L + +R+L T++ D
Sbjct: 333 ERHSAIRTLIAEGNLS-DLHPTLAGI-GDLERILARIALG----TARPRD---------- 376
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ +L+ +L P L +L + LLA + + E+ + R + A
Sbjct: 377 ---LAVLRDSLAIFPALHDLLAGIEDPLLARLDADIGEHPDTRDLLTR--------AILA 425
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ P + R A G D LD R + + L + RE +P LK+ +N
Sbjct: 426 QPPMLIRDGGVIAP--GFDEELDQLRDLSSNADRFLLELETRERERTGIPGLKVGYNRVH 483
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I H+ G+ P +++ + T EL + S+ R + E
Sbjct: 484 GYYIEI-HRAQAGRAPLDYVRRQTLKDAERYITPELKRFEDQILSSRERSLAREKALYEE 542
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L+ + E + L A + LD+I N S + P T+ + I+ GRHP
Sbjct: 543 LLGRLAESLPPLQTSAAGIATLDVIANLAERAESLN----WNCPQLTDTASIEIEDGRHP 598
Query: 363 ILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + + F+ N + + M+++TGPNM GKSTY++Q LIV+LA +G +VPA +T
Sbjct: 599 VVEGVIDIPFVANGLRMDARRRMLVITGPNMGGKSTYMRQNALIVLLAHVGSFVPARAAT 658
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I VDRIF+R+G D+L STFM EM+ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 659 IGPVDRIFSRIGASDDLAGGRSTFMVEMEETANILNNATDQSLVLMDEVGRGTSTFDGLS 718
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AWSC L + + AY++FA+H L+ L YP + +H V + F L+DGP
Sbjct: 719 LAWSCGVELATRIGAYSLFATHYFELTTLPEEYPGIANVHLDAVEHGTSIVFMHALRDGP 778
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ---YKQIQMLYHAAQ 597
+ YGL +A +AG+P+ VI AR + + + E +Q + I +
Sbjct: 779 ANQ-SYGLAVAALAGVPAPVIARARERLRELEEAARRHAEREAVQLSLFPLIAKPEPTPE 837
Query: 598 RLICLKYSNQDEESI--RHALQNL 619
+C D +S+ R AL+NL
Sbjct: 838 HPLCAVLRGIDPDSLTPRDALENL 861
>gi|448543491|ref|ZP_21625045.1| DNA mismatch repair protein MutS [Haloferax sp. ATCC BAA-646]
gi|448550583|ref|ZP_21628886.1| DNA mismatch repair protein MutS [Haloferax sp. ATCC BAA-645]
gi|448559187|ref|ZP_21633439.1| DNA mismatch repair protein MutS [Haloferax sp. ATCC BAA-644]
gi|445706214|gb|ELZ58097.1| DNA mismatch repair protein MutS [Haloferax sp. ATCC BAA-646]
gi|445711088|gb|ELZ62882.1| DNA mismatch repair protein MutS [Haloferax sp. ATCC BAA-645]
gi|445711557|gb|ELZ63348.1| DNA mismatch repair protein MutS [Haloferax sp. ATCC BAA-644]
Length = 924
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 174/592 (29%), Positives = 296/592 (50%), Gaps = 62/592 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+IE +H ++ SLF + T T G RLLR L +P +D +
Sbjct: 258 LELDATTQRNLELIETMHG------DRSGSLFDTIDHTVTSPGGRLLREWLTRPRRDRDE 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D ++ L S +E R + + +++ S+ +
Sbjct: 312 LARRHDAVESLASA------------ALARERVREVLDGAYDLERLASR------SASGS 353
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
S ++ ++ L LP LA ++ A S L + R + + A +R + + + E
Sbjct: 354 AGASELLSVRDTLSVLPALADAIEGTELADSPLAEVVSR--PDRDAAADLRTDLADALAE 411
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARR-----SFCDTSEAVHNLANKYREELKLP 232
D P TQ G D L D+ R S+ DT LA++ + + L
Sbjct: 412 D------PPKTVTQGGLFQTGYDDELDDLIERHESAKSWLDT------LADREKRDHGLS 459
Query: 233 NLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAA 289
++ + N G+Y+ + K + ++P + Q+ N+ T EL +R + A
Sbjct: 460 HVTVDRNKTDGYYIQV-GKSVADQVPDHYRQIKTLKNSKRFVTEELEEKEREILRLEEAR 518
Query: 290 GECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
G+ E L + + +L + + +D + + H +TRP T
Sbjct: 519 GDLEYE---LFEELRERVARHAELLQDVGRTIAEVDALASLATHAAGNG----WTRPELT 571
Query: 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
+ G L I+ GRHP++E+ DF+PN++ + + +IVTGPNMSGKSTY++Q LI +LA
Sbjct: 572 DAGALDIEAGRHPVVETT-TDFVPNDLRMDDERGFLIVTGPNMSGKSTYMRQAALITLLA 630
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +VPA +T+ VVD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE
Sbjct: 631 QVGSFVPARSATVGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDE 690
Query: 470 LGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
+GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA V +H R+
Sbjct: 691 VGRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTSLADHLDRVANVHVAADERDG 750
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ F + DGP YG+ +A++AG+P V++ A + R+ +E K +E
Sbjct: 751 DVTFLRTVVDGPTD-RSYGIHVADLAGVPRPVVDRAGDVLDRL--REEKAIE 799
>gi|206900896|ref|YP_002250799.1| DNA mismatch repair protein MutS [Dictyoglomus thermophilum H-6-12]
gi|206739999|gb|ACI19057.1| DNA mismatch repair protein MutS [Dictyoglomus thermophilum H-6-12]
Length = 853
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 178/585 (30%), Positives = 302/585 (51%), Gaps = 47/585 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D+T++++LE++E + ++ SL +L T T G RLL+ +LQPL ++ I
Sbjct: 264 LDSTAIKHLELLETVREG-----QRRGSLIWVLDKTLTSMGARLLKKWILQPLLNVNAIK 318
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + E + E + L++ P + +R+ + T K L
Sbjct: 319 KRQGAIKEFLEKEPWRREIEDILKEMP-DLERINSRINYN--TATPKEL----------- 364
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I L+ AL LPLL K L+ A+S L + ++ + E + E +D ++ +
Sbjct: 365 ----IYLRQALSFLPLLRKSLEKAESDRLKELKENLPDLEP-------LYEELDRALVES 413
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ + IK G D LD RR ++ + + NL N+ RE + +LK+ +N
Sbjct: 414 PPSHI---KDGGYIKDGYDPNLDELRRLLRESKDWLINLENRERERTGIKSLKIGYNQVF 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT--EICL 300
G+Y+ + ++ +P +I+ N T EL NK E I+ E
Sbjct: 471 GYYIEVTKANL-NLVPPDYIRKQTLVNAERFITPELKEWE--NKILHAEDNIKKIEEELF 527
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L + E +T A+++ +D+ + S A Y P T + + I GR
Sbjct: 528 QNLRKKVIEHSRDITTFAQIIGEIDVYI-SLAKAAREY---NYVCPQVTNDYDVIIREGR 583
Query: 361 HPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HP++E + F+PN+ +++ + ++TGPNM+GKSTY++Q+ LI+ILAQ+G ++PA
Sbjct: 584 HPVIERMLPPGTFVPNDAYLNREKFIDLITGPNMAGKSTYIRQIALIIILAQMGSFIPAK 643
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I VVDRIFTR+G D++ S STF+ EMKE ++ + +ERSLI++DE+GR TS+ D
Sbjct: 644 EAKIGVVDRIFTRIGAWDDISSGESTFLVEMKEVGNILSHATERSLIILDEVGRGTSTYD 703
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G +IAW+ E++ + +KA T+FA+H L+EL ++K L V + + F ++
Sbjct: 704 GISIAWAIVEYIHNKIKAKTLFATHYHELTELEKELRHLKNLSVAVQEKGKEIIFLHKIV 763
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-KEVKRMEI 581
D P YG+ +A++A LP VIE A I + K +E+K+ E+
Sbjct: 764 DKPAD-KSYGIYVAQLADLPREVIERAEKILLELEKGREIKKKEV 807
>gi|345872115|ref|ZP_08824054.1| DNA mismatch repair protein mutS [Thiorhodococcus drewsii AZ1]
gi|343919370|gb|EGV30118.1| DNA mismatch repair protein mutS [Thiorhodococcus drewsii AZ1]
Length = 859
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 174/571 (30%), Positives = 284/571 (49%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ E L T + +L +L T T G+RLLR L +PL+D++++
Sbjct: 267 LDAATRRNLELTESL------TGRPEHTLAGILDRTATAMGSRLLRRWLNRPLRDLQSVR 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKET---DRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + L +L + LR+ E +R+L +
Sbjct: 321 ERHAAIRTLTDRRRL-----EPLREHLAEIGDLERILARVALGSARP------------- 362
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ +L+ +L ALP L + + LL + + E+ + + R
Sbjct: 363 ----RDLAVLRDSLAALPALRVQIGELDDPLLTRLDTEIGEHPEILDLLVR--------A 410
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ A+ P + R A G D LD R + + + +L + RE +P LK+ +N
Sbjct: 411 ILAQPPVLIRDGGVIAP--GYDSELDQLRDLSNNADKFLIDLETRERERTGIPGLKVGYN 468
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ + ++P+ +++ T EL + S+ R +
Sbjct: 469 RVHGYYIELSRAQAD-QVPAEYVRRQTLKGAERYITPELKRFEDQVLSSRERALAREKAL 527
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAID 357
E L+ + E ++ L A + LD I N A T++ ++ P TE+ + I
Sbjct: 528 YEELLGRLTERLAPLQTSAAGIAALDAIANLAERAETLN------WSCPTLTEDSRIEIR 581
Query: 358 GGRHPILES-IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E I F+ N++ + M+++TGPNM GKSTY++Q LIV+LA G YVP
Sbjct: 582 DGRHPVVERVIDAPFVANDLLMDAERRMLVITGPNMGGKSTYMRQNALIVLLAHAGSYVP 641
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +TI VDRIF+R+G D+L STFM EM+ETA ++ N +E SL++MDE+GR TS+
Sbjct: 642 AASATIGTVDRIFSRIGASDDLAGGRSTFMVEMEETANILNNATEHSLVLMDEVGRGTST 701
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AWSC L + + AY++FA+H L+ L +P + +H V +N + F
Sbjct: 702 FDGLSLAWSCSIELATRIGAYSLFATHYFELTTLPEEHPGIVNVHLDAVEHDNSIVFMHA 761
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
L++GP + YGL +A +AG+PS VI+ AR+
Sbjct: 762 LREGPAN-QSYGLAVAALAGVPSKVIQRART 791
>gi|448457199|ref|ZP_21595694.1| DNA mismatch repair protein MutS [Halorubrum lipolyticum DSM 21995]
gi|445810780|gb|EMA60795.1| DNA mismatch repair protein MutS [Halorubrum lipolyticum DSM 21995]
Length = 930
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 171/585 (29%), Positives = 296/585 (50%), Gaps = 52/585 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DAT+ RNLE+ E + G SLF + T T G RLLR L +P +D +
Sbjct: 275 VDATTQRNLELTETMRGESEG------SLFETVDRTVTAAGGRLLREWLTRPRRDGAELT 328
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ L S + R +ET + +++ ++ A
Sbjct: 329 RRLDAVEALAS--------AALARDRLRET----LGDAYDLERLAAR------ATSGSAG 370
Query: 123 ISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ ++ +L +P LA + A S + A + R + E+ A++ + + ED
Sbjct: 371 ARELLSVRDSLALVPALADAVSGTALADSPVAAVLDR--IDRERAATLHDELAAALAED- 427
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P A+TQ ++ G D LD S + +E + LA + + + L ++ + N
Sbjct: 428 -----PPKAKTQGGL-LREGYDDELDELIASHEEAAEWLDTLAEREKRQYGLSHVTVDRN 481
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNN---IHCSTLELASLNVRNKSAAGECYIRT 296
G+Y+ + K + ++P + ++ N+ + E +R + A GE
Sbjct: 482 KTDGYYIQV-GKSVADQVPEHYREIKTLKNSKRFVTDELEEREREVLRLEEARGELEYE- 539
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
EAL + + D +L + + +D + + H +TRP T+ L +
Sbjct: 540 --LFEALRERVAADAELLQDVGRAVAEIDALASLATHAAGND----WTRPELTDERRLDV 593
Query: 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
+ GRHP++E DF+PN++ + +IVTGPNMSGKSTY++Q LI +LAQ G +VP
Sbjct: 594 EAGRHPVVERT-TDFVPNDLRLDGERGFLIVTGPNMSGKSTYMRQAALIQLLAQAGSFVP 652
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +T+ +VD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE+GR T++
Sbjct: 653 ARSATVGLVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEESLVILDEVGRGTAT 712
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG +IAW+ E+L + ++A T+FA+H L+ LA P V +H V R+ + F
Sbjct: 713 YDGISIAWAATEYLHNEVRARTLFATHYHELTTLADHLPRVANVHVAVDERDGEVTFLRT 772
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
++DGP + YG+ +A++AG+P V+ A ++ R+ +E K +E
Sbjct: 773 VRDGPTN-RSYGVHVADLAGVPEPVVSRADTVLDRL--REEKAIE 814
>gi|419955589|ref|ZP_14471715.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri TS44]
gi|387967630|gb|EIK51929.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri TS44]
Length = 859
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L ++ +L ++ +T G+RLL L +PL++ E +
Sbjct: 270 LDGASRRNLELDVNL------AGGRENTLQSVMDRCQTAMGSRLLTRWLNRPLRNREILE 323
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQL L + +R+L + NA+
Sbjct: 324 ARQDSITCLLEHYRFEQLQPQLKDI-----GDLERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ + AL ALP L ++ + L + +S+ + A + R +ID
Sbjct: 367 -----DLARQRDALAALPQLQAGMQALVAPHLLELSKSIGTYPELAELLARA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQYLMDLETREKTRTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + ++ L A L LD++ N ++ RP F E + I+ G
Sbjct: 531 YDELLEMLIGHLAPLQESAAALAELDVLSNLAERALNLD----LNRPRFVEQPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 587 RHPVVEQVLETPFVANDLGLDDATRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ D
Sbjct: 647 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+A+T+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAEQLAKLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 798
>gi|374623823|ref|ZP_09696322.1| DNA mismatch repair protein MutS [Ectothiorhodospira sp. PHS-1]
gi|373942923|gb|EHQ53468.1| DNA mismatch repair protein MutS [Ectothiorhodospira sp. PHS-1]
Length = 870
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 172/568 (30%), Positives = 280/568 (49%), Gaps = 49/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L + + +L H+L T G+RLL L QPL+D +
Sbjct: 266 LDAATRRNLELTTNL------SGGRDNTLAHVLDQAATAMGSRLLARWLHQPLRDRRILK 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAKKS 119
R + L+ + + F + LR + +R+L +P+ +T+
Sbjct: 320 GRHGAISALL-DTRAFEQIQPQLRGI-GDLERILTRIALGSARPRDLTT----------- 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ +L LP L + L ++ L + + E+ + + +R VID+
Sbjct: 367 ---------LRDSLAELPALQQTLHPLRAVRLRELAEGIGEHPRVVDLLRRA--VIDQP- 414
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + R A G D LD R + + + +L + RE + NLK+ +N
Sbjct: 415 -----PVLIRDGGVIA--QGYDAELDELRALSENADQFLLDLEQRERERTGIHNLKVAYN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I + + P + + T EL + SA R +
Sbjct: 468 RVHGYYIEI-SRGQSDRAPDDYTRRQTLKGAERFITPELKRFEDKVLSARERALAREKQL 526
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL+ + + L AE L LD++ N S T P T+ + I+ G
Sbjct: 527 YEALLTQLHAPLPDLRRSAEALAELDVLANLAERADSLD----LTAPELTDQPGVRIEDG 582
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + ++ F+PN++ + M+++TGPNM GKSTY++Q LIV++A +G +VPA
Sbjct: 583 RHPVVERVLDEPFVPNDLTLDPKRRMLVITGPNMGGKSTYMRQAALIVLMAHVGSFVPAR 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I VDRIFTR+G D+L S STFM EM E A ++ + +E SL++MDE+GR TS+ D
Sbjct: 643 RALIGPVDRIFTRIGASDDLASGRSTFMVEMTEAANILNHATEHSLVLMDEIGRGTSTFD 702
Query: 479 GFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++A++C EHL + +A+ +FA+H L+ L YP + +H V +R+ F +K
Sbjct: 703 GLSLAFACAEHLATRNRAFCLFATHYFELTALPDQYPTIANVHIDAVEHGDRIVFLHAVK 762
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+GP + YGL +A +AG+P VI AR
Sbjct: 763 EGPANQ-SYGLHVAALAGVPKAVIRRAR 789
>gi|358448379|ref|ZP_09158883.1| DNA mismatch repair protein MutS [Marinobacter manganoxydans
MnI7-9]
gi|357227476|gb|EHJ05937.1| DNA mismatch repair protein MutS [Marinobacter manganoxydans
MnI7-9]
Length = 876
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 172/571 (30%), Positives = 285/571 (49%), Gaps = 43/571 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLEI + L G + +L ++ T T G R LR L +PL+D+E +
Sbjct: 270 LDAASRRNLEI----DTNLMG--GHQYTLAWVMDRTATSMGGRELRRWLNRPLRDVEIVR 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + L K + +RVL + +
Sbjct: 324 QRQQAVSALLDG--FHYEPVHDLLKAVGDIERVLARVALRSARP---------------- 365
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A ALP L + LK S + + + E + A + +R +ID
Sbjct: 366 -RDLARLRDAFQALPDLQETLKPVNSHHVVRLATIIGEYPELADLLERA--IIDNP---- 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R + I+ G D LD R + + + ++ + R+ + LK+ +N
Sbjct: 419 --PVVIR--EGGVIREGFDEELDELRNISENAGQYLLDVETRERDRTGISTLKVGYNRVH 474
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I + P +I+ N T EL + SA R + +
Sbjct: 475 GYYIEISRAQ-SDQAPVDYIRRQTLKNAERFITPELKEFEDKALSAKSRALAREKGLYDD 533
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
+++A+ ++ L A+ L LD++ N FA ++ R++ P F+E+ I+ GRHP
Sbjct: 534 VLEAVAGQLAPLQDAAQALAELDVLSN-FAERATSL---RFSAPEFSESPGFDIEEGRHP 589
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + ++ F+PN++ + M+++TGPNM GKSTY++Q LI +LA G +VPA+ +
Sbjct: 590 VVEQLLDEPFVPNDLLMDTQRRMLVMTGPNMGGKSTYMRQAALIALLAYTGSFVPANRAV 649
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I VDRIFTRMG+ D++ STFM EM ETA ++ N +E SL++MDE+GR TS+ DG +
Sbjct: 650 IGPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTFDGLS 709
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+ EHL ++ YT+FA+H L++LA + +H ++ + F + DGP
Sbjct: 710 LAWATAEHLAREIRCYTLFATHYFELTQLADELQHAVNVHLTATEHDDSIVFLHNVHDGP 769
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI A++ S +
Sbjct: 770 AS-QSYGLQVAKLAGVPQDVIRNAKTQLSHL 799
>gi|299770825|ref|YP_003732851.1| DNA mismatch repair protein MutS [Acinetobacter oleivorans DR1]
gi|298700913|gb|ADI91478.1| DNA mismatch repair protein MutS [Acinetobacter oleivorans DR1]
Length = 879
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 172/582 (29%), Positives = 304/582 (52%), Gaps = 45/582 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +++L+ + + K + +RVL +++ D+ + +
Sbjct: 330 ARLDAIEQLIQG--YHESPVRLVLKEIGDIERVLSRVALG----SARPRDLVQLRHA--- 380
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ I L+TAL V++ +S LL + + + + + ++ + + I E+
Sbjct: 381 CAQIPALRTAL------TPVIQAKKSKLLVQLDQELGD---FKALHQHLMAAIVENP--- 428
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G D LD R+ + + +L K RE + LK+ +N
Sbjct: 429 --PVLLRDGNVIA--EGYDADLDELRQIRDHAGQFLIDLEIKERERTGINTLKIGYNRVS 484
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + + P+ +I+ N T EL S + S+ R + EA
Sbjct: 485 GYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEA 543
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ +RE+++ L +++ + +D++ N FAH ++ + RP FT + I GRHP
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVVAN-FAHQAR---LNNWARPEFTPETGIKIQAGRHP 599
Query: 363 ILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E+++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA +
Sbjct: 600 VVEALNKAPFTPNDTFLDAQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPAKTAK 659
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+ DG +
Sbjct: 660 LGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTYDGLS 719
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQLKD 538
+AW+C L +K +FA+H L+EL + I +++V + N L +++
Sbjct: 720 LAWACVVDLTKRVKCLCLFATHYFELTELGS---EAGIDNYHVTAQELNGNLILLHKVQQ 776
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 777 GPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|448494497|ref|ZP_21609484.1| DNA mismatch repair protein MutS [Halorubrum californiensis DSM
19288]
gi|445689332|gb|ELZ41572.1| DNA mismatch repair protein MutS [Halorubrum californiensis DSM
19288]
Length = 923
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 181/593 (30%), Positives = 297/593 (50%), Gaps = 64/593 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+++DAT+ RNLEI E + G SLF + T T G RLLR L +P +D ET
Sbjct: 263 VDVDATTQRNLEITETMRGDADG------SLFDTVDHTVTAAGGRLLREWLTRPRRDRET 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD ++ L S ++ R + + +++ ++ + ++
Sbjct: 317 LAARLDAVEALASA------------ALARDRIREVLGDAYDLERLAART--TSGSAGAR 362
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+S ++ L LP LA + D A S A + R + E+ A +R+ + E + E
Sbjct: 363 ELLS----VRDTLGLLPDLADAVDDTALADSPAAAVLDR--VDRERAAGLREELAEALAE 416
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLD--IAR----RSFCDTSEAVHNLANKYREELKL 231
D P A+T +K G D LD I R +S+ D LA + + L
Sbjct: 417 D------PPKAKTGGGL-LKEGYDAELDELIERHESVKSWLD------GLAEREKRTHGL 463
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSA 288
++ + N G+Y+ + K + ++P + ++ N+ T ELA +R + A
Sbjct: 464 SHVTVDRNKTDGYYVQV-GKSVADQVPEHYREIKTLKNSKRFVTDELAEKERAVLRLEEA 522
Query: 289 AGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
GE L V E +L + LD + + H +TRP
Sbjct: 523 RGELEYELFEELRERV---AERAELLQDAGRAIAELDALASLATHAARRD----WTRPEL 575
Query: 349 TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
TE L ++ GRHP++E DF+PN++ + +IVTGPNMSGKSTY++Q LI +L
Sbjct: 576 TEERQLDVEAGRHPVVEGT-TDFVPNDLRLDADRGFLIVTGPNMSGKSTYMRQAALIQLL 634
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ G +VPA + + +VD I+TR+G +D L STFM EM+E + ++ + + SL+++D
Sbjct: 635 AQAGSFVPARAAEVGLVDGIYTRVGALDELAQGRSTFMIEMQELSNILHSATADSLVILD 694
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA P V +H V R+
Sbjct: 695 EVGRGTATYDGISIAWAATEYLHNEVRARTLFATHYHELTTLADHLPRVANVHVAVDERD 754
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ F ++DGP + YG+ +A++AG+P V+ A + R+ +E K +E
Sbjct: 755 GEVTFLRTVRDGPTN-RSYGVHVADLAGVPDPVVSRADEVLDRL--REEKAIE 804
>gi|448573151|ref|ZP_21640735.1| DNA mismatch repair protein MutS [Haloferax lucentense DSM 14919]
gi|445718916|gb|ELZ70599.1| DNA mismatch repair protein MutS [Haloferax lucentense DSM 14919]
Length = 924
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 173/591 (29%), Positives = 296/591 (50%), Gaps = 60/591 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E +H ++ SLF + T T G RLLR L +P +D +
Sbjct: 258 LELDATTQRNLELTETMHG------DRSGSLFDTIDHTVTSPGGRLLREWLTRPRRDRDE 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D ++ L S +E R + + +++ S+ +
Sbjct: 312 LARRHDAVESLASA------------ALARERVREVLDGAYDLERLASR------SASGS 353
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQ--SFLLANIYRSVCENEKYASIRKRIGEVIDED 178
S ++ ++ L LP LA ++ ++ LA + S + + A +R + + + ED
Sbjct: 354 AGASELLSVRDTLSVLPALADAIEGSELADSPLAEVV-SRPDRDAAADLRTDLDDALAED 412
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARR-----SFCDTSEAVHNLANKYREELKLPN 233
P TQ G D L D+ R S+ DT LA++ + + L +
Sbjct: 413 ------PPKTVTQGGLFRTGYDDELDDLIERHESAKSWLDT------LADREKRDHGLSH 460
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAG 290
+ + N G+Y+ + K + ++P + Q+ N+ T EL +R + A G
Sbjct: 461 VTVDRNKTDGYYIQV-GKSVADQVPDHYRQIKTLKNSKRFVTEELEEKEREILRLEEARG 519
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
+ E L + + +L + + +D + + H +TRP TE
Sbjct: 520 DLEYE---LFEDLRERVARHAELLQDVGRTIAEVDALASLATHAAGNG----WTRPELTE 572
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
G L I+ GRHP++E+ DF+PN++ + + +IVTGPNMSGKSTY++Q LI +LAQ
Sbjct: 573 AGALDIEAGRHPVVETT-TDFVPNDLHMDDERGFLIVTGPNMSGKSTYMRQAALITLLAQ 631
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G +VPA +T+ VVD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE+
Sbjct: 632 VGSFVPARSATVGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDEV 691
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA V +H R+
Sbjct: 692 GRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTSLADHLDRVANVHVAADERDGD 751
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ F + DGP YG+ +A++AG+P V++ A + R+ +E K +E
Sbjct: 752 VTFLRTVVDGPTD-RSYGIHVADLAGVPRPVVDRAGDVLDRL--REEKAIE 799
>gi|432329250|ref|YP_007247394.1| DNA mismatch repair protein MutS [Aciduliprofundum sp. MAR08-339]
gi|432135959|gb|AGB05228.1| DNA mismatch repair protein MutS [Aciduliprofundum sp. MAR08-339]
Length = 829
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 176/580 (30%), Positives = 294/580 (50%), Gaps = 58/580 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D+T+++NLE+ + ++ +LF + T G+RLL+ + +PLK+++ I
Sbjct: 247 LDSTTLKNLEVFKNF------LGEERYTLFFTINACVTPMGSRLLKRWMQRPLKNVDEIE 300
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAKKS 119
R D ++EL + + + L K+ +R+ +PK
Sbjct: 301 KRQDAVEELTKKQMMLESIRDVLSHI-KDLERIKTRISLGRARPK--------------- 344
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--E 177
+I LK L K +D + + I R E+EK + G+++D E
Sbjct: 345 -----DLIALKEGL-------KYAQDLKMNFESKILRE--ESEKIEGL----GKIVDLIE 386
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P IK G LD R + + + + R + +LK+
Sbjct: 387 RSIAGDYPI-----GDGVIKRGYSRELDSLRDLTLHAQDLIGKMEERERRRTGIKSLKIG 441
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N+ G+Y+ + ++ K+P + + N+ T EL L R SA + +
Sbjct: 442 YNDVMGYYIEVSKANLS-KVPDHYKRKQTLKNSERFITDELKDLEYRILSAKEKINDIEQ 500
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E +++ ++ + S + +AE + +D I S A YTRP E+ +AI
Sbjct: 501 ALYEEIIEKLKGETSRIARVAEAIAHIDTI-QSLAKVALEW---NYTRPIVDESMDIAIK 556
Query: 358 GGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E + DF+PN+ IS A +++TGPNM+GKSTY++QV LI ILAQ+G +VPA
Sbjct: 557 NGRHPVVER-YTDFVPNDTNISGEARFIMLTGPNMAGKSTYMRQVALITILAQMGSFVPA 615
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++ I VVDRI+TR+G D++ STFM EM E A ++ +ERSLI++DE+GR TS+
Sbjct: 616 DYAKIGVVDRIYTRVGASDDITRGRSTFMMEMVELANILNTATERSLILLDEIGRGTSTY 675
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG AIAWS EH+ + +KA TIFA+H +L EL + NV+ H V + L F ++
Sbjct: 676 DGLAIAWSITEHIHNKIKARTIFATHYHHLIELENVLENVRNYHIAVKETPDGLVFVRKV 735
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
G YG+ +A++AG+P V++ A+++ I +++V
Sbjct: 736 MPGGMS-KSYGIEVAKLAGVPEDVVKRAKNVLEMIEEEKV 774
>gi|190411097|gb|ACE78303.1| MutS [Vibrio parahaemolyticus]
Length = 841
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 296/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + +YA+ + E++ E +
Sbjct: 367 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQYAAPIDEVCELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L R+ + LK+ +NN
Sbjct: 413 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERDRHGIDTLKVGYNNVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 527 --WEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 AGRHPVVEQVTSDPFIANPIELSPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + + +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 641 AESAQVGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 797
>gi|363899230|ref|ZP_09325740.1| DNA mismatch repair protein MutS [Oribacterium sp. ACB1]
gi|395209621|ref|ZP_10398715.1| DNA mismatch repair protein MutS [Oribacterium sp. ACB8]
gi|361959067|gb|EHL12363.1| DNA mismatch repair protein MutS [Oribacterium sp. ACB1]
gi|394705252|gb|EJF12781.1| DNA mismatch repair protein MutS [Oribacterium sp. ACB8]
Length = 902
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 182/591 (30%), Positives = 296/591 (50%), Gaps = 80/591 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ S RNLE+ E L K+ +L +L TKT G+R+LR L +PL+D +
Sbjct: 268 MVVDSYSQRNLELWETLRE-----KKKRGTLLWVLDYTKTAMGSRMLRHFLERPLRDKKK 322
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++E + L ++L + +R+L L NA+
Sbjct: 323 IEARLDAVEEFTGHYIDMEELREYLDSI-YDIERLLSRIS----------LSTANAR--- 368
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--ED 178
++ LK +L LP + K L QS LL+ ++GE +D ED
Sbjct: 369 ----DLLALKLSLQYLPDIKKALSPFQSSLLS-----------------KMGEEMDSLED 407
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIA--------RRSFCDTSEAVHNLANKYREELK 230
+ + ++ + ++K G GL+ + R + + E + L + RE+
Sbjct: 408 I-YRKIEEEIVEEPPLSVKEG--GLIKASFSKDVEDYRNAGVNGKEWLQELEAREREKTG 464
Query: 231 LPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLEL-------ASL 281
+ NLK+ +N G+ + K QG++P FI Q + G + LE A
Sbjct: 465 IKNLKIKYNRIFGYCFEV-SKAYQGEIPDYFIRRQTLAQGERYITTELEELQNRILGAEE 523
Query: 282 NVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD 341
+++ A C +R EI E + I++ L L L L + + +
Sbjct: 524 KLKDLEYALFCTLREEIAAE--LPRIQKTARELAHLDAYLSLAKLAIK-----------E 570
Query: 342 RYTRPHFTENGPLAIDGGRHPILESIHND--FIPNNIFISEAANMVIVTGPNMSGKSTYL 399
Y RP +E G L I GRHP++E + + FIPN+ + E + I+TGPNM+GKSTY+
Sbjct: 571 NYVRPRLSEGGSLFIKEGRHPVVEKLLEEEHFIPNDTSLEENQEIAIITGPNMAGKSTYM 630
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+QV LIV+L+ IG +VPA + + + DRIFTR+G D+L STFM EM E A +++N
Sbjct: 631 RQVALIVLLSAIGSFVPAKEAELPICDRIFTRVGASDDLAQGQSTFMVEMSEVANILRNA 690
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKI 518
+++SL+++DE+GR TS+ DG +IAW+ E++ ++A T+FA+H L+EL NVK
Sbjct: 691 TKQSLLILDEIGRGTSTFDGLSIAWAVVEYIARHIQAKTLFATHYHELTELEGKLNNVKN 750
Query: 519 LHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
V ++ + F ++ G YG+ +A++AG+P V+ AR I++
Sbjct: 751 YCIAVSKKDGEISFLRKIIPGGAD-ESYGIDVAKLAGVPEGVLSRAREISA 800
>gi|302039393|ref|YP_003799715.1| DNA mismatch repair protein MutS [Candidatus Nitrospira defluvii]
gi|300607457|emb|CBK43790.1| DNA mismatch repair protein MutS [Candidatus Nitrospira defluvii]
Length = 882
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 179/577 (31%), Positives = 295/577 (51%), Gaps = 40/577 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M++D+ ++RNLE+++P A ++ +L +L T T G+RLLR LL+PL +
Sbjct: 280 MHLDSVTIRNLELVKPAGRAEESSNQSPYTLLGILDRTVTAMGSRLLREWLLRPLVNSAA 339
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL +DEL + L LR + C + L V N +
Sbjct: 340 IEVRLTAVDELKRQIDIRVRLRTALRIVQD-----ISRLCSR------MSLGVANPR--- 385
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK ++ +LP + L S L+A++ RS +N + + E+I E +
Sbjct: 386 ----DVLALKISVSSLPAIQAELSALDSPLIADL-RSSWDNAQ------DLYELI-EGAI 433
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P R +K G +D R++ + + L K RE + +LK+ +N
Sbjct: 434 EQEAPVSIRDGSI--LKSGFHPEVDELRKASREGKGWIAGLEAKERERTGVESLKIRYNQ 491
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + ++ GK+P +I+ N T EL L R A + +
Sbjct: 492 VFGYYIELTKANL-GKVPPDYIRKQTLVNAERFMTTELKELEERVTGADTKLTALEQALF 550
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L + + + L ++ L +LD +V + A T + ++RY RP E L I GR
Sbjct: 551 EQLRTRLATETARLQEISRRLAILD-VVAALAETAA---LNRYVRPTVDEGDGLHILQGR 606
Query: 361 HPILE--SIHNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E + FIPN+ + A + + I+TGPNM+GKSTYL+QV LI ++AQ+G +VPA
Sbjct: 607 HPVVERLDLSGGFIPNDTHLDLATSRLHILTGPNMAGKSTYLRQVALITLMAQMGSFVPA 666
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I + DRIFTR+G DNL STFM EM E+A ++ + RSLI++DE+GR TS+
Sbjct: 667 TEARIGLTDRIFTRVGASDNLAGGQSTFMVEMTESAHILNCATPRSLILLDEIGRGTSTY 726
Query: 478 DGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG +IAW+ E++ L A T+FA+H +++L ++ + V R+ R+ F
Sbjct: 727 DGLSIAWAIAEYIQDPQRLGARTLFATHYHEMTQLESLREGITNYCVAVQERDGRVLFLR 786
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
++ G YG+ +A++AGLP VI A+++ +++
Sbjct: 787 KIIRGGADR-SYGIHVAQLAGLPDQVIHRAKAVLAQL 822
>gi|448613581|ref|ZP_21663461.1| DNA mismatch repair protein MutS [Haloferax mucosum ATCC BAA-1512]
gi|445740478|gb|ELZ91984.1| DNA mismatch repair protein MutS [Haloferax mucosum ATCC BAA-1512]
Length = 903
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 170/583 (29%), Positives = 295/583 (50%), Gaps = 60/583 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E +H ++ SLF + T T G RLLR L +P +D +
Sbjct: 258 LELDATTQRNLELTETMHG------DRSGSLFDTIDHTVTSPGGRLLREWLTRPRRDRDE 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++ RLD + L S +E R + + +++ S+ A
Sbjct: 312 LSRRLDAVQSLASA------------ALARERVREVLDGAYDLERLASR------AASGS 353
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+ ++ ++ LD LP LA + A S L + R + + AS++ + + + E
Sbjct: 354 AGANDLLSVRDTLDVLPALADAIDGTELADSPLAEVVSR--PDRDAAASLQTELADALAE 411
Query: 178 DVLHARVPFVARTQQCFAIKG---GIDGLLDI--ARRSFCDTSEAVHNLANKYREELKLP 232
D P TQ +G +DGL++ + +S+ DT LA++ + + L
Sbjct: 412 D------PPKTVTQGGLFQRGYDDELDGLIERHESAKSWLDT------LADREKRQHGLS 459
Query: 233 NLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAA 289
++ + N G+Y+ + K + ++P + Q+ N+ T EL +R +
Sbjct: 460 HVTVDRNKTDGYYIQV-GKSVADQVPDYYRQIKTLKNSKRFVTEELEEKEREVLRLEETR 518
Query: 290 GECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
G+ + L + + + +L + L +D + + H +TRP T
Sbjct: 519 GDLEYD---LFQDLRERVADRAELLQNVGRTLAEVDALASLATHAAGNG----WTRPELT 571
Query: 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
+ G L I+ GRHP++E+ +F+PN++ + +IVTGPNMSGKSTY++Q LI +LA
Sbjct: 572 DAGSLRIEAGRHPVVETT-TEFVPNDLHMDRERGFLIVTGPNMSGKSTYMRQAALITLLA 630
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +VPA +TI VVD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE
Sbjct: 631 QVGSFVPARSATIGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEESLVILDE 690
Query: 470 LGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
+GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA V +H R+
Sbjct: 691 VGRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTTLADHLDRVANVHVAADERDG 750
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+ F + DGP YG+ +A++AG+P V++ A + R+
Sbjct: 751 DVTFLRTVVDGPTD-RSYGIHVADLAGVPRPVVDRAGDVLDRL 792
>gi|337287987|ref|YP_004627459.1| DNA mismatch repair protein mutS [Thermodesulfobacterium sp. OPB45]
gi|334901725|gb|AEH22531.1| DNA mismatch repair protein mutS [Thermodesulfobacterium geofontis
OPF15]
Length = 865
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 189/604 (31%), Positives = 311/604 (51%), Gaps = 60/604 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++ RNLE+I LW S +K SLF +L T+T G RLL+ +L PLKDI+ I
Sbjct: 263 LDESTKRNLELI----RNLWDGS-EKYSLFWVLDKTQTPMGARLLKEWILYPLKDIKKIQ 317
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + + N+ L L + LRK + +R L C L + N K+
Sbjct: 318 ERQEVVKFFVENKTLREELKKILRKI-SDLER-LSTRC---------ALKLANPKE---- 362
Query: 123 ISSIILLKTALDALPLLAKVL-KDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
+ LL+ +L LP + +L K+ F + + E ++ + + + + ED
Sbjct: 363 ---MGLLRESLKYLPEIKDILEKENPLFFPKKLEELLKAIEDFSELYELLNAWLVED--- 416
Query: 182 ARVPFVARTQQCFAIKG---GIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + KG +D LLD+ + SE L + +E+ +PNL++ +
Sbjct: 417 ---PPTTLKEGGIIKKGVSQELDELLDLKENAVYYLSE----LEKREKEKTGIPNLRIGY 469
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT-- 296
N G+Y + K ++P F + N T EL L NK + E IR
Sbjct: 470 NKVFGYYFEV-SKSYLKRVPVYFERKQTLTNVERFVTPELKELE--NKILSSEEKIRNLE 526
Query: 297 -EICLEALVDAIREDVSV----LTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
E+ LE +RE V++ L A+ L LD+ ++ + I + YT P TE
Sbjct: 527 YELFLE-----LREKVALYKEKLKTTAKALAELDVFLSLASVAIE----NDYTMPEITEE 577
Query: 352 GPLAIDGGRHPILESIHND--FIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
++ GRHP+LE I F+PN++ ++ E A ++IVTGPNM GKST+L+Q LI I+
Sbjct: 578 PIFIVEEGRHPVLEQIQGKEKFVPNSLEMNKEDATVLIVTGPNMGGKSTFLRQNALIAIM 637
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ+G +VPA + + + D+IF+R+G D L STFM EM E A++++N + +SL+++D
Sbjct: 638 AQMGSFVPAKSAKVGIFDKIFSRIGAGDELIKGRSTFMVEMSECAYILKNATSKSLVILD 697
Query: 469 ELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
E+GR TS+ DG ++AW+ E+L + +T+ A+H L+ELA +Y +K V N
Sbjct: 698 EVGRGTSTFDGMSLAWAIAENLYKKRVFTLLATHYIELTELAKLYSGIKNYRVTVKEWNG 757
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
+ F +++ G + YG+ +A++AG+P V++ A+ I ++ K +K + L K+
Sbjct: 758 EVIFLYKVLPGVAN-QSYGIEVAKLAGIPQEVVDRAKEILYKLESKSLKETKELTLAPKK 816
Query: 589 IQML 592
+ L
Sbjct: 817 VLQL 820
>gi|292654720|ref|YP_003534617.1| DNA mismatch repair protein MutS [Haloferax volcanii DS2]
gi|448293205|ref|ZP_21483382.1| DNA mismatch repair protein MutS [Haloferax volcanii DS2]
gi|291372283|gb|ADE04510.1| DNA mismatch repair protein mutS [Haloferax volcanii DS2]
gi|445571474|gb|ELY26024.1| DNA mismatch repair protein MutS [Haloferax volcanii DS2]
Length = 924
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 174/592 (29%), Positives = 295/592 (49%), Gaps = 62/592 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E +H ++ SLF + T T G RLLR L +P +D +
Sbjct: 258 LELDATTQRNLELTETMHG------DRSGSLFDTIDHTVTSPGGRLLREWLTRPRRDRDE 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D ++ L S +E R + + +++ S+ +
Sbjct: 312 LARRHDAVESLASA------------ALARERVREVLDGAYDLERLASR------SASGS 353
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
S ++ ++ L LP LA ++ A S L + R + + A +R + + + E
Sbjct: 354 AGASELLSVRDTLSVLPALADAIEGTELADSPLAEVVSR--PDRDAAADLRTDLADALAE 411
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARR-----SFCDTSEAVHNLANKYREELKLP 232
D P TQ G D L D+ R S+ DT LA++ + + L
Sbjct: 412 D------PPKTVTQGGLFQTGYDDELDDLIERHESAKSWLDT------LADREKRDHGLS 459
Query: 233 NLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAA 289
++ + N G+Y+ + K + ++P + Q+ N+ T EL +R + A
Sbjct: 460 HVTVDRNKTDGYYIQV-GKSVADQVPDHYRQIKTLKNSKRFVTEELEEKEREILRLEEAR 518
Query: 290 GECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
G+ E L + + +L + + +D + + H +TRP T
Sbjct: 519 GDLEYE---LFEDLRERVARHAELLQDVGRTIAEVDALASLATHAAGNG----WTRPELT 571
Query: 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
E G L I+ GRHP++E+ DF+PN++ + + +IVTGPNMSGKSTY++Q LI +LA
Sbjct: 572 EAGALDIEAGRHPVVETT-TDFVPNDLRMDDERGFLIVTGPNMSGKSTYMRQAALITLLA 630
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +VPA +T+ VVD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE
Sbjct: 631 QVGSFVPARSATVGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDE 690
Query: 470 LGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
+GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA V +H R+
Sbjct: 691 VGRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTSLADHLDRVANVHVAADERDG 750
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ F + DGP YG+ +A++AG+P V++ A + R+ +E K +E
Sbjct: 751 DVTFLRTVVDGPTD-RSYGIHVADLAGVPRPVVDRAGDVLDRL--REEKAIE 799
>gi|217077343|ref|YP_002335061.1| DNA mismatch repair protein MutS [Thermosipho africanus TCF52B]
gi|217037198|gb|ACJ75720.1| DNA mismatch repair protein MutS [Thermosipho africanus TCF52B]
Length = 817
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 175/593 (29%), Positives = 304/593 (51%), Gaps = 47/593 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +V NL +I K ++L+ +L TKT G+RLL+ +LQPLK +
Sbjct: 250 MILDSKTVDNLSLI---------PGEKGKNLYDILNKTKTAMGSRLLKKWILQPLKVKKD 300
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + +D ++ L + ++L + +R+L + KV+ K
Sbjct: 301 IIERQEIVDAFFNDRLLLNEIREYLNGIF-DVERILTRLQYG--KVSPK----------- 346
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I LK L +P + + LK + F + V E E++ + + + + ED
Sbjct: 347 ----DLISLKNTLYIIPNILEALKTNEKF-----SKYVQEIEEFPEVVELLERALYED-- 395
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + IK G LD R + + + + RE + LK+ FN
Sbjct: 396 ----P-SSTVGDGNVIKDGYSPELDDYRNFLFHSEDKLKEFEREERERTNIQKLKVGFNQ 450
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ +P ++ +P +I+ N+ T +L + SA + I +
Sbjct: 451 VFGYYIEVPKGQVKN-VPDYYIRKQTLVNSERYITQKLKEFEEKIMSAREKVEILEKALF 509
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L I + V+ + AE + LD ++++FA+ + Y +P F ++ + R
Sbjct: 510 DELTKMILKYVNDIKKTAEKIAELD-VLSTFAYV---SQLYGYVKPEF-DDEKFIVKEAR 564
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
H ++E ++F+PN+I++ M I+TGPNMSGKSTY++QV LI ++AQIGC+VPA +
Sbjct: 565 HAVVERYVSNFVPNDIYMDSLRRMYIITGPNMSGKSTYIRQVGLIAVMAQIGCFVPAKNA 624
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
+ + DRIFTRMG D++ + STF+ EM E A ++ ++ SL+++DE+GR TS+ DG
Sbjct: 625 KLPIFDRIFTRMGARDDISTGKSTFLVEMSEVALILSKATKDSLVLLDEVGRGTSTFDGI 684
Query: 481 AIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
+IAW+ E++ + +K TIFA+H L+EL+ +Y +K L V N+ + F ++ DG
Sbjct: 685 SIAWAMSEYIYNEIKCKTIFATHFTELTELSDVYNGIKNLTIEVEETNDGIVFLHKVVDG 744
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
YG+ +A++AG+P V+E A+ I ITKK ++ L+ Q++ +
Sbjct: 745 VAD-RSYGIEVAKIAGVPDGVVERAKEILEVITKKSELEKKVRVLKEGQLRQI 796
>gi|190411089|gb|ACE78299.1| MutS [Vibrio parahaemolyticus]
Length = 850
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 296/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + +YA+ + E++ E +
Sbjct: 367 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQYAAPIDEVCELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L R+ + LK+ +NN
Sbjct: 413 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERDRHGIDTLKVGYNNVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 527 --WEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 AGRHPVVEQVTSDPFIANPIELSPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + + +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 641 AESAQVGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 797
>gi|424741967|ref|ZP_18170302.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-141]
gi|422944399|gb|EKU39395.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-141]
Length = 879
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 172/582 (29%), Positives = 304/582 (52%), Gaps = 45/582 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +++L+ + + K + +RVL +++ D+ + +
Sbjct: 330 ARLDAIEQLIQG--YHESPVRLVLKEIGDIERVLSRVALG----SARPRDLVQLRHA--- 380
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ I L+TAL V++ +S LL + + + + + ++ + + I E+
Sbjct: 381 CAQIPALRTAL------TPVIQAKKSKLLVQLDQELGD---FKALHQHLIAAIVENP--- 428
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G D LD R+ + + +L K RE + LK+ +N
Sbjct: 429 --PVLLRDGNVIA--EGYDADLDELRQIRDHAGQFLIDLEIKERERTGINTLKIGYNRVS 484
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + + P+ +I+ N T EL S + S+ R + EA
Sbjct: 485 GYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEA 543
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ +RE+++ L +++ + +D++ N FAH ++ + RP FT + I GRHP
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVVAN-FAHQAR---LNNWARPEFTPETGIKIQAGRHP 599
Query: 363 ILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E+++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA +
Sbjct: 600 VVEALNKAPFTPNDTFLDAQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPAKAAK 659
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+ DG +
Sbjct: 660 LGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTYDGLS 719
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQLKD 538
+AW+C L +K +FA+H L+EL + I +++V + N L +++
Sbjct: 720 LAWACVVDLTKRVKCLCLFATHYFELTELGS---EAGIDNYHVTAQELNGNLILLHKVQQ 776
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 777 GPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|389711215|ref|ZP_10187026.1| DNA mismatch repair protein MutS [Acinetobacter sp. HA]
gi|388610067|gb|EIM39204.1| DNA mismatch repair protein MutS [Acinetobacter sp. HA]
Length = 877
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 172/572 (30%), Positives = 293/572 (51%), Gaps = 53/572 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+IEPL GTS LF ++ +T G RLL L+QPL+D ++
Sbjct: 277 LDPVTRRNLELIEPLFE--HGTS-----LFQLINDCQTAMGGRLLSRTLMQPLRDTAILD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD L+ F + R++ ++V S++ + +A+
Sbjct: 330 ERLDATQVLLDG-------------FHESPIRLVLKEISDIERVLSRIA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLLAKVLK----DAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L L+ QS LL + + + + + +R+ I E+
Sbjct: 373 --DLVQLRQACAQIPFLRHALQPMVSQQQSKLLIQLNEELGD---FHGLHERLMSAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE+ +P LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGFDAELDELRKIRDHAGQFLIDLEIKEREQSGIPTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P +I+ N T EL + + S+ R ++
Sbjct: 481 NRVSGYYIELTRAQAE-QAPEHYIRRQTLKNAERYITPELKAFEDKVLSSESRALAREKL 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E L+D +R+D+ L +++ + +D++ N FAH + ++RP ++ L I
Sbjct: 540 LFEMLLDELRKDIGNLQMMSSAIAQIDLLCN-FAHQARLR---NWSRPKYSPEIGLKIQA 595
Query: 359 GRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ + M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKTAFTPNDTQLDYQHRMAIITGPNMGGKSTFMRQTALIALLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
T+ +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 QAVTLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L ++ +FA+H L+ELA+ I +++V R N L
Sbjct: 716 DGLSLAWACVLDLTRRIQCLCLFATHYFELTELAS---ESGIDNYHVTAREVNGNLILLH 772
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++ GP H GL +A++AG+P++VI A++
Sbjct: 773 KVQQGPASQSH-GLQVAKLAGIPASVIREAQN 803
>gi|448584765|ref|ZP_21647508.1| DNA mismatch repair protein MutS [Haloferax gibbonsii ATCC 33959]
gi|445727619|gb|ELZ79229.1| DNA mismatch repair protein MutS [Haloferax gibbonsii ATCC 33959]
Length = 919
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 183/625 (29%), Positives = 303/625 (48%), Gaps = 77/625 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ E SA G++ LF +L T G R L A L +PL D +
Sbjct: 289 LQLDATAIRSLELFES-RSARAGST-----LFSVLDETACALGRRRLEAWLRRPLVDRDE 342
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD +D L + L + L + +++ ++V + +
Sbjct: 343 IEARLDAVDALCDDALARADLREHLSS------------VYDLERLVARV------SRER 384
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P + + + S LLA++ S+ E E +R +G+ I D
Sbjct: 385 ADARDLRSLKTTLDRVPKVREEVG-TGSDLLADLRDSLDELED---VRDLVGDAIVSDPP 440
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G D LD R + E V NL + +E + +L++ +N
Sbjct: 441 Q-------EITEGGVIADGFDAELDDIRGTAEAGREWVSNLEAREQERTGIDSLEVGYNQ 493
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE---- 291
G+Y+ + + ++ ++P + Q +K+ + L E L +++ A E
Sbjct: 494 VHGYYIEVTNPNLD-RVPDDYRRRQTLKNSERFYTPELKEREDEILRASDRADALEYDLF 552
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
C +R ++ E A+ DA+ D+ VL LA+V D Y RP
Sbjct: 553 CEVRADVATESARIQAVADAL-ADLDVLRTLADVAVAND-----------------YARP 594
Query: 347 HF------TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQ 400
F E+G + IDGGRHP++E ++F+PN + ++ +VTGPNMSGKSTY++
Sbjct: 595 EFHAGDPTDEHGGIHIDGGRHPVVERAQDEFVPNPADLPRG-SVALVTGPNMSGKSTYMR 653
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV L +LAQ+G +VPA + + V+DR+FTR+G D++ STFM EM E ++ N +
Sbjct: 654 QVALGCVLAQVGSFVPAASARLPVLDRVFTRIGASDDIAGGQSTFMREMSELTEILHNAT 713
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKIL 519
SL+++DE+GR TS++DG AIA + E L + A T+FA+H +L++ A V L
Sbjct: 714 GDSLVLLDEVGRGTSTADGLAIARAATEFLHDEVGATTLFATHYHDLTDAADDREGVFNL 773
Query: 520 HFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRM 579
HF R+ + F + DGP YG+ +A++AG+P++V+ AR + +
Sbjct: 774 HFTAARRDGEVTFLHSVADGPSS-SSYGVEVAQLAGVPASVVARARDLVDETDPESADDT 832
Query: 580 EINCLQYKQIQMLYHAAQRLICLKY 604
E + + + AA+ Y
Sbjct: 833 EGDGVAAAANGEVAEAAEDGTLAAY 857
>gi|419759908|ref|ZP_14286193.1| DNA mismatch repair protein MutS [Thermosipho africanus H17ap60334]
gi|407514947|gb|EKF49733.1| DNA mismatch repair protein MutS [Thermosipho africanus H17ap60334]
Length = 828
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 175/593 (29%), Positives = 304/593 (51%), Gaps = 47/593 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +V NL +I K ++L+ +L TKT G+RLL+ +LQPLK +
Sbjct: 261 MILDSKTVDNLSLI---------PGEKGKNLYDILNKTKTAMGSRLLKKWILQPLKVKKD 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + +D ++ L + ++L + +R+L + KV+ K
Sbjct: 312 IIERQEIVDAFFNDRLLLNEIREYLNGIF-DVERILTRLQYG--KVSPK----------- 357
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I LK L +P + + LK + F + V E E++ + + + + ED
Sbjct: 358 ----DLISLKNTLYIIPNILEALKTNEKF-----SKYVQEIEEFPEVVELLERALYED-- 406
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + IK G LD R + + + + RE + LK+ FN
Sbjct: 407 ----P-SSTVGDGNVIKDGYSPELDDYRNFLFHSEDKLKEFEREERERTNIQKLKVGFNQ 461
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ +P ++ +P +I+ N+ T +L + SA + I +
Sbjct: 462 VFGYYIEVPKGQVKN-VPDYYIRKQTLVNSERYITQKLKEFEEKIMSAREKVEILEKALF 520
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L I + V+ + AE + LD ++++FA+ + Y +P F ++ + R
Sbjct: 521 DELTKMILKYVNDIKKTAEKIAELD-VLSTFAYV---SQLYGYVKPEF-DDEKFIVKEAR 575
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
H ++E ++F+PN+I++ M I+TGPNMSGKSTY++QV LI ++AQIGC+VPA +
Sbjct: 576 HAVVERYVSNFVPNDIYMDSLRRMYIITGPNMSGKSTYIRQVGLIAVMAQIGCFVPAKSA 635
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
+ + DRIFTRMG D++ + STF+ EM E A ++ ++ SL+++DE+GR TS+ DG
Sbjct: 636 KLPIFDRIFTRMGARDDISTGKSTFLVEMSEVALILSKATKDSLVLLDEVGRGTSTFDGI 695
Query: 481 AIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
+IAW+ E++ + +K TIFA+H L+EL+ +Y +K L V N+ + F ++ DG
Sbjct: 696 SIAWAMSEYIYNEIKCKTIFATHFTELTELSDVYNGIKNLTIEVEETNDGIVFLHKVVDG 755
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
YG+ +A++AG+P V+E A+ I ITKK ++ L+ Q++ +
Sbjct: 756 VAD-RSYGIEVAKIAGVPDGVVERAKEILEVITKKSELEKKVRVLKEGQLRQI 807
>gi|260779399|ref|ZP_05888290.1| DNA mismatch repair protein MutS [Vibrio coralliilyticus ATCC
BAA-450]
gi|260604489|gb|EEX30789.1| DNA mismatch repair protein MutS [Vibrio coralliilyticus ATCC
BAA-450]
Length = 854
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 181/578 (31%), Positives = 296/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L ++ T T G+R+L+ L QP++DI T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAEVIDHTATPMGSRMLKRWLHQPMRDINTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL LF L L++ + +R+L + + D A+
Sbjct: 320 HRLDAISEL-KELTLFADLHPILKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP LA+ + LA+ Y + + +YA+ ++ + E++ E +
Sbjct: 367 ------LRHAMQQLPELAETMG-----TLAHPY--LTKLGQYAAPQEAVCELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + + RE + LK+ +NN
Sbjct: 413 NPPVVIRDGGVIA--EGYNAELDEWRKLADGATEYLEKMEQDERERHGIDTLKVGYNNVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L LA + +D++ N S Y RP ++ + I
Sbjct: 527 --WEELFDLLMPHLEKLQNLASAISQIDVLQNLAERADSLD----YCRPVMSQEPGIHIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 SGRHPVVEQVMDEPFIANPIELNPQRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 641 AESAQIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATTNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L L + T+FA+H L+EL P++ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLAKELGSMTLFATHYFELTELPNQIPHLANVHLDAVEHGDTIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P +VI+ AR+ +++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKSVIKNARAKLTQLEQ 797
>gi|442608744|ref|ZP_21023491.1| DNA mismatch repair protein MutS [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441750140|emb|CCQ09553.1| DNA mismatch repair protein MutS [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 866
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 179/568 (31%), Positives = 284/568 (50%), Gaps = 49/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + +NLE+ L G N +L H+L T G+RLL+ + P++D +N
Sbjct: 274 LDAATRKNLELTTNLAG---GVDN---TLAHVLDKAATAMGSRLLKRRIHTPIRDRVELN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAKKS 119
+RL+ + ++ +QLF L LR + +RV+ +P+ +T
Sbjct: 328 SRLNAISAIIE-QQLFGELYDVLRTV-GDIERVVTRLALCNARPRDLTR----------- 374
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
LK AL+ L L VL L I + + + +R V++
Sbjct: 375 ---------LKNALELLEPLHNVLVQCTDKRLVQIKNHTPKQPELLDLLRRA--VVENP- 422
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + R A G + LD R ++ + L + RE + LK+ FN
Sbjct: 423 -----PVLIRDGGVIA--PGYNAELDEWRALSEGATDVLEQLEVRERERTGINTLKIGFN 475
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GFY+ + + +P+ +I+ NN EL + + + +
Sbjct: 476 KVHGFYIEVSRANSH-LVPADYIRRQTLKNNERYIIPELKEHEDKVLGSQSKALALEKQL 534
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL D+I L L+A L LD ++N+FA T +D Y++P T N L I G
Sbjct: 535 YEALFDSIAPHTEALQLMASALADLD-VLNTFAERAQT--LD-YSKPELTGNDELDIIAG 590
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + FI N + +++ M+I+TGPNM GKSTY++Q LI ++A IGC+VPA
Sbjct: 591 RHPVVEHVSKTPFIANPVKLNKTRKMLIITGPNMGGKSTYMRQTALITLMAHIGCFVPAQ 650
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+ D
Sbjct: 651 RACIGNIDRIFTRIGASDDLASGRSTFMVEMTETATILNNATANSLVLMDEIGRGTSTYD 710
Query: 479 GFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++A++ ++L L A T+FA+H L+ELA + P + +H V + + FK +
Sbjct: 711 GLSLAYATADYLARQLNAKTLFATHYFELTELAELQPGLVNVHLDAVEHGDTIAFKHTVL 770
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+GP +GL +A +AG+P VI+TA+
Sbjct: 771 EGPAS-KSFGLQVASLAGVPKVVIQTAK 797
>gi|339443299|ref|YP_004709304.1| hypothetical protein CXIVA_22350 [Clostridium sp. SY8519]
gi|338902700|dbj|BAK48202.1| hypothetical protein CXIVA_22350 [Clostridium sp. SY8519]
Length = 888
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 193/592 (32%), Positives = 300/592 (50%), Gaps = 71/592 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+++ RNLE+ E L NK+ SL +L TKT G R LR+ + QPL D +
Sbjct: 274 MVIDSSTRRNLELTETLRE-----KNKRGSLLWVLDKTKTAMGARTLRSYIEQPLIDRKE 328
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++EL N +E R + + +++ S+++ NA
Sbjct: 329 INQRLDAVEELKKN------------MIGREELREYLNPIYDLERLISRIV-YQNANPR- 374
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I + ++ LP + ++LKD LL I + + + S+ I I ED
Sbjct: 375 ----DLIAFRNSIAMLPPIREILKDFSCELLQQINQRMDDLSDLFSL---IQASITED-- 425
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V+ ++ I+ G D R + D + + + +E+ + NL++ +N
Sbjct: 426 ----PPVS-VREAGIIREGYSEEADRLRSARSDGRSWLARIEQEEKEKTGIRNLRIKYNK 480
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGE-- 291
G+YL + ++D+ +P FI+ N T EL L +K A E
Sbjct: 481 VFGYYLEVTNSYRDL---VPDYFIRKQTLTNAERYITPELKELEETILGASDKLNALEYD 537
Query: 292 --CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
C IR++I + V + A + LD+ V S A + + Y RP
Sbjct: 538 LFCEIRSKIAGQ---------VVRIQQTARAVAELDVFV-SLAQVADS---NGYVRPKIN 584
Query: 350 ENGPLAIDGGRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIV 406
E G + I GRHP++E I ND FIPN++ + +N + I+TGPNM+GKSTY++Q LIV
Sbjct: 585 EKGSIRITEGRHPVVERMIRNDMFIPNDMTLDNHSNRIAIITGPNMAGKSTYMRQNALIV 644
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQIG +VPA ++I +VDRIFTR+G D+L S STFM EM E A +++N + SL++
Sbjct: 645 LMAQIGSFVPAKSASIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATASSLLI 704
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFY- 522
+DE+GR TS+ DG IAW+ E++ + L A T+FA+H L+EL + +H Y
Sbjct: 705 LDEIGRGTSTIDGLGIAWAVVEYISNPKLLGAKTLFATHYHELTELEG---KLDAVHNYC 761
Query: 523 VVIRNNRLDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITK 573
V +R D F K P YG+ +A++AG+P VI A+ I + K
Sbjct: 762 VAVREKGDDIVFLRKIVPGGTDRSYGIQVAKIAGVPDPVIRRAKEICEELEK 813
>gi|385330787|ref|YP_005884738.1| DNA mismatch repair protein MutS [Marinobacter adhaerens HP15]
gi|311693938|gb|ADP96811.1| DNA mismatch repair protein MutS [Marinobacter adhaerens HP15]
Length = 876
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 171/571 (29%), Positives = 284/571 (49%), Gaps = 43/571 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLEI + L G + +L ++ T T G R LR L +PL+D+E +
Sbjct: 270 LDAASRRNLEI----DTNLMG--GHQYTLAWVMDRTATSMGGRELRRWLNRPLRDVEIVR 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + L K + +RVL + +
Sbjct: 324 QRQQAVSALLDG--FHYEPVHDLLKAVGDIERVLARVALRSARP---------------- 365
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A ALP L + LK S + + + E + A + +R +ID
Sbjct: 366 -RDLARLRDAFQALPDLQETLKPVNSHHVVRLATIIGEYPELADLLERA--IIDNP---- 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R + I+ G D LD R + + + ++ + R+ + LK+ +N
Sbjct: 419 --PVVIR--EGGVIREGFDEELDELRNISENAGQYLLDVETRERDRTGISTLKVGYNRVH 474
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I + P +I+ N T EL + SA R + +
Sbjct: 475 GYYIEISRAQ-SDQAPVDYIRRQTLKNAERFITPELKEFEDKALSAKSRALAREKGLYDD 533
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
+++ + ++ L A+ L LD++ N FA ++ R++ P F+E+ I+ GRHP
Sbjct: 534 VLETVAGQLAPLQDAAQALAELDVLSN-FAERATSL---RFSAPEFSESPGFDIEEGRHP 589
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + ++ F+PN++ + M+++TGPNM GKSTY++Q LI +LA G +VPA+ +
Sbjct: 590 VVEQLLDEPFVPNDLLMDTQRRMLVITGPNMGGKSTYMRQAALIALLAYTGSFVPANRAV 649
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I VDRIFTRMG+ D++ STFM EM ETA ++ N +E SL++MDE+GR TS+ DG +
Sbjct: 650 IGPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTFDGLS 709
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+ EHL ++ YT+FA+H L++LA + +H ++ + F + DGP
Sbjct: 710 LAWATAEHLAREIRCYTLFATHYFELTQLADELQHAVNVHLTATEHDDSIVFLHNVHDGP 769
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI A++ S +
Sbjct: 770 AS-QSYGLQVAKLAGVPQDVIRNAKTQLSHL 799
>gi|375132003|ref|YP_004994103.1| DNA mismatch repair protein [Vibrio furnissii NCTC 11218]
gi|315181177|gb|ADT88091.1| DNA mismatch repair protein [Vibrio furnissii NCTC 11218]
Length = 853
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 179/578 (30%), Positives = 291/578 (50%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+R+L+ L QP++ ++T+N
Sbjct: 266 LDAATRRNLELTQNLAG---GTDN---TLAEVLDHCATPMGSRMLKRWLHQPMRGLDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL LF L L++ + +R+L + +++ D+ + +
Sbjct: 320 QRLDAIGEL-KQHALFAELHPVLKQI-GDIERILARLALR----SARPRDLARLRHALQQ 373
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ + + ++L LP L ++ DAQ ++CE + E +
Sbjct: 374 LPELADVLSSL-TLPYLGQLRDDAQPM------DNLCE--------------LLEQAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R +E + L RE + LK+ +N
Sbjct: 413 NPPVVIRDGGVIA--DGYNAELDEWRDLANGATEYLDKLEADERERHGIDTLKVGYNAVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
EAL D + + + LA L +D++ N S Y RP ++ + I
Sbjct: 527 --WEALFDQLLPHLEQMQNLASALSQIDVLQNLAERAESLD----YCRPTLSDEPGIRIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I ++ M+I+TGPNM GKSTY++Q LI +LA IG YVP
Sbjct: 581 AGRHPVVEQVMSEPFIANPIELNPQRKMLIITGPNMGGKSTYMRQTALIALLAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N +ERSL++MDE+GR TS+
Sbjct: 641 AEAAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATERSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + A T+FA+H L+EL P++ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNALPHLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P VI+ AR+ +++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKAVIKNARTKLTQLEQ 797
>gi|336125122|ref|YP_004567170.1| MutS [Vibrio anguillarum 775]
gi|335342845|gb|AEH34128.1| MutS [Vibrio anguillarum 775]
Length = 866
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 181/576 (31%), Positives = 289/576 (50%), Gaps = 53/576 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L T L +L T G+R+L+ L QP++ I+T+N
Sbjct: 278 LDAATRRNLEITQNLSGGFDNT------LAEVLDHCATPMGSRMLKRWLHQPMRCIDTLN 331
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL LF L L++ + +R+L + +
Sbjct: 332 QRLDAIGEL-KQLALFSELQPVLKQI-GDIERILARLALRSARP---------------- 373
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A+ LP L+++L+ L + V ++ ++ +R +
Sbjct: 374 -RDLARLRHAMQQLPQLSEILQPLSQPHLVQLTHHVQPLDELCTLLER--------AIKD 424
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G LD R +E ++ L + RE + LK+ +N
Sbjct: 425 NPPVVIRDGGVIA--DGYSAELDEWRDLANGATEYLNKLEAEERERHGIDTLKVGYNAIH 482
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ + L E LN ++K+ A E +
Sbjct: 483 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIAELKAHEDKVLNSKSKALAVEKQL--- 538
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA L LD++ N T + +D Y RP ++ + I
Sbjct: 539 --WEELFDLLLPHLEQMQNLASSLSQLDVLQNL---TERAESLD-YCRPTLSKEPAIHIQ 592
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ND FI N I ++ M+I+TGPNM GKSTY++Q LI +LA IGCYVP
Sbjct: 593 AGRHPVVEQVMNDPFIANPIELNPQRKMLIITGPNMGGKSTYMRQTALITLLAHIGCYVP 652
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 653 AEAAHIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATQNSLVLMDEIGRGTST 712
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ + L S + A T+FA+H L+EL P++ +H V + + F
Sbjct: 713 YDGLSLAWASAQWLASQIGALTLFATHYFELTELPNQLPHLANVHLDAVEHGDSIAFMHA 772
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+++G YGL +A +AG+P TVI+ AR+ S++
Sbjct: 773 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARAKLSQL 807
>gi|189083238|sp|Q2SBR5.2|MUTS_HAHCH RecName: Full=DNA mismatch repair protein MutS
Length = 860
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 170/580 (29%), Positives = 297/580 (51%), Gaps = 51/580 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLEI L + + +L ++ + T G+R+LR L +PL+ E +
Sbjct: 271 LDAASRRNLEIDVNL------AGDYRHTLAWVMDKSATAMGSRMLRRWLNRPLRSQEEVR 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + EL+ + Q F L + L++ +++R+L + +++ D+ + + TL
Sbjct: 325 QRQNAIKELLEDYQ-FEALHETLKQI-GDSERILSRVALR----SARPRDLARLRDTLTL 378
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
LP L K +++ L + + V E + I + I+E+
Sbjct: 379 -------------LPDLQKQMEELNDTHLRRLAKQVSE---FPDIADLLSRAIEENP--- 419
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R ++ G D LD R + + + + + +E +L +LK+ +N
Sbjct: 420 --PVVIR--DGGVLRQGFDEELDELRSISENAGDYLLEIEKREKERTQLSSLKVGYNRVH 475
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ + + + P+ +I+ N T EL + + SA R ++ +
Sbjct: 476 GYFIEL-SRTQSDQAPADYIRRQTLKNAERFITPELKTFEDKALSAKSRALSREKMLYDQ 534
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
+++ I E ++ L A L LD++ N ++ V P T+ L I+GGRHP
Sbjct: 535 ILETIVEQLAPLQDSARALSELDVLSNFAERALTLNLVC----PDLTDEHMLHIEGGRHP 590
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + D F+PN++ + + M+I+TGPNM GKSTY++Q IVILA G +VPA
Sbjct: 591 VVEQVSQDPFVPNDLNLQDKHRMLIITGPNMGGKSTYMRQTACIVILAYCGSFVPAAKVV 650
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +DR+FTRMG+ D++ STFM EM ETA ++ + +SL++MDE+GR TS+ DG +
Sbjct: 651 IGPIDRVFTRMGSSDDIAGGRSTFMVEMTETANILHYATRQSLVLMDEVGRGTSTFDGLS 710
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+C EHL ++A+T+FA+H L+ L + NV +H N+ + F + +GP
Sbjct: 711 LAWACAEHLAREIQAFTLFATHYFELTALPKTHANVANVHLTATEHNDSIVFLHTVHEGP 770
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
YG+ +A++AG+P VI A +K++K++E
Sbjct: 771 AS-KSYGIQVAQLAGVPPQVINQA--------QKQLKQLE 801
>gi|260767192|ref|ZP_05876134.1| DNA mismatch repair protein MutS [Vibrio furnissii CIP 102972]
gi|260617800|gb|EEX42977.1| DNA mismatch repair protein MutS [Vibrio furnissii CIP 102972]
Length = 853
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 179/578 (30%), Positives = 291/578 (50%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+R+L+ L QP++ ++T+N
Sbjct: 266 LDAATRRNLELTQNLAG---GTDN---TLAEVLDHCATPMGSRMLKRWLHQPMRGLDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL LF L L++ + +R+L + +++ D+ + +
Sbjct: 320 QRLDAIGEL-KQHALFAELHPVLKQI-GDIERILARLALR----SARPRDLARLRHALQQ 373
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ + + ++L LP L ++ DAQ ++CE + E +
Sbjct: 374 LPELADVLSSL-TLPYLGQLRDDAQPM------DNLCE--------------LLEQAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R +E + L RE + LK+ +N
Sbjct: 413 NPPVVIRDGGVIA--DGYNAELDEWRDLANGATEYLDKLEADERERHGIDTLKVGYNAVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
EAL D + + + LA L +D++ N S Y RP ++ + I
Sbjct: 527 --WEALFDQLLPHLEQMQNLASALSQIDVLQNLAERAESLD----YCRPTLSDEPGIRIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I ++ M+I+TGPNM GKSTY++Q LI +LA IG YVP
Sbjct: 581 AGRHPVVEQVMSEPFIANPIELNPQRKMLIITGPNMGGKSTYMRQTALIALLAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N +ERSL++MDE+GR TS+
Sbjct: 641 AEAAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATERSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + A T+FA+H L+EL P++ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNALPHLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P VI+ AR+ +++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKAVIKNARTKLTQLEQ 797
>gi|15895112|ref|NP_348461.1| DNA mismatch repair protein MutS [Clostridium acetobutylicum ATCC
824]
gi|44888237|sp|Q97I19.1|MUTS_CLOAB RecName: Full=DNA mismatch repair protein MutS
gi|15024812|gb|AAK79801.1|AE007692_9 Mismatch repair protein MutS, ATPase [Clostridium acetobutylicum
ATCC 824]
Length = 869
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 180/587 (30%), Positives = 312/587 (53%), Gaps = 46/587 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
++ID S RNLE+ E L +KK SL +L T T G R +R + +PL D E
Sbjct: 260 LSIDINSRRNLELTETLKD-----KSKKGSLLWVLDKTSTAMGGRQIRKWIERPLIDDEK 314
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++E+++N L + L++ + +R+ K++SK + NAK+
Sbjct: 315 INLRLDAVEEMLTNVSYNEDLKELLKQVY-DIERL-------AGKISSKSV---NAKE-- 361
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I L+ +++ LP + K++K+ S LL N+ ++ + I K + E I+++
Sbjct: 362 -----MISLRGSIEKLPAIKKLIKNFNSELLVNMENAL---DDLGDIYKLLYESINDN-- 411
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P ++ ++ IK G + +D R + + + +L N RE + +LK+ +N
Sbjct: 412 ----PSLS-IKEGNIIKEGYNKDIDELRLAKSHGKQWIASLENTEREVTGIKSLKVSYNK 466
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ I ++ +I+ N+ T EL + + A + +
Sbjct: 467 VFGYYIEITKSNLNLVPEGRYIRKQTLTNSERYITPELKEMEEKILGAEEKLVLLEYNVF 526
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ + I +++ + A++L LD I SFA + Y +P +G L I GR
Sbjct: 527 CEIRERIEKEIDRIKGSAKILSELDCIC-SFADVARE---NNYCKPVIKRDGTLVIKEGR 582
Query: 361 HPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E + +F+ N+ I+ + N M+++TGPNM+GKSTY++QV LIV++AQIGC+VPA
Sbjct: 583 HPVVEKVIASGNFVANDTVINNSDNVMMLITGPNMAGKSTYMRQVGLIVLMAQIGCFVPA 642
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I + D+IFTR+G D+L + STFM EM E + +++N ++ SLI++DE+GR TS+
Sbjct: 643 SAAEISICDKIFTRIGASDDLNAGKSTFMVEMWEVSHILKNATKNSLILLDEVGRGTSTY 702
Query: 478 DGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG +IAWS E++ +LK T+FA+H L++L +K ++ + ++ D F
Sbjct: 703 DGLSIAWSVIEYICKSENLKCKTLFATHYHELTKLEGEIEGLK--NYSIAVKKVNDDIIF 760
Query: 535 QLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
K + YG+ +A++AGLP V+ AR I + + + K E
Sbjct: 761 LRKIISKGADESYGIEVAKIAGLPEEVLVRAREILKDLEEAKPKTAE 807
>gi|373501469|ref|ZP_09591823.1| DNA mismatch repair protein mutS [Prevotella micans F0438]
gi|371948285|gb|EHO66166.1| DNA mismatch repair protein mutS [Prevotella micans F0438]
Length = 888
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 189/587 (32%), Positives = 299/587 (50%), Gaps = 80/587 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D ++R+LE++ P+H GTS L ++L T T G R+LR ++ PLKD++T
Sbjct: 279 VRLDRFTIRSLELVAPMHDE--GTS-----LLNVLDRTVTPMGGRMLRRWMVFPLKDVKT 331
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLC-----HFCFKPKKVTSKVLDVDN 115
IN RLD +D FF +E D +C H +++ S+V
Sbjct: 332 INERLDVVD-------YFF----------REPDFRICVDEQFHRVGDLERIISRV----- 369
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSV--CENEKYASIRKRIGE 173
+ ++ LK AL AL + + +L I + CE S+R+RI
Sbjct: 370 -AAGRVSPREVVQLKNALMALQPVKSACSSTNNEVLKRIGEQINLCE-----SLRERI-- 421
Query: 174 VIDEDVLHARVP-FVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLP 232
E+ +H P VA+ I G + LD R + + + K E+ +
Sbjct: 422 ---ENEIHPDPPQLVAKGD---VIADGFNSELDELRAIRTGGKQYLIEIQQKEIEQTGIT 475
Query: 233 NLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKS 287
+LK+ FNN G+YL + + K+P+ +I+ T EL L K
Sbjct: 476 SLKVGFNNVFGYYLEV-RNTFRNKVPADWIRKQTLAQAERYITPELKEYEAKILGADEKI 534
Query: 288 AAGECYIRTEIC--LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTR 345
A E + E+ ++ + I+ + + L+A V CLL SFA T + RY R
Sbjct: 535 LALEAKLFAELVQDMQTFIPQIQINAN---LIAHVDCLL-----SFAKTAEAQ---RYVR 583
Query: 346 PHFTENGPLAIDGGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQ 401
P E + I GRHP++E+ I ++PN++ + SE ++I+TGPNM+GKS L+Q
Sbjct: 584 PVIDEENVIDIRQGRHPVIETQLPIGEQYVPNDVLLDSEHQQIMIITGPNMAGKSALLRQ 643
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
LIV+LAQ G +VPA + I +VD+IFTR+G DN+ STFM EM E A ++ NV+
Sbjct: 644 TALIVLLAQAGSFVPAESARIGLVDKIFTRVGASDNISLGESTFMVEMTEAANILNNVTP 703
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKI 518
RSL++ DELGR TS+ DG +IAW+ EHL +A T+FA+H L+E+ I+ ++
Sbjct: 704 RSLVLFDELGRGTSTYDGISIAWAIVEHLHEQPRARARTLFATHYHELNEMEKIFKRIRN 763
Query: 519 LHFYVVIRNNRLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETA 564
+ V +N R+ F +L + G H +G+ +AE+AG+P ++++ A
Sbjct: 764 YNVAVQEQNGRVIFIRKLQRGGSEH--SFGIHVAEIAGMPPSIVKRA 808
>gi|347531827|ref|YP_004838590.1| DNA mismatch repair protein MutS [Roseburia hominis A2-183]
gi|345501975|gb|AEN96658.1| DNA mismatch repair protein MutS [Roseburia hominis A2-183]
Length = 874
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 191/602 (31%), Positives = 302/602 (50%), Gaps = 73/602 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+++ RNLE++E L K+ SL +L TKT G RLLR+ + QPL D
Sbjct: 261 MIIDSSTRRNLELVETLRE-----KQKRGSLLWVLDKTKTAMGARLLRSYVEQPLIDKAE 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D + EL + L ++L + +R++ + +T+ D
Sbjct: 316 IEKRQDAICELNQHVITREELREYLNPI-YDLERLITRVTY----LTANPRD-------- 362
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I ++++ LP + +L D Q LL I + E+ ++ ID ++
Sbjct: 363 -----LIAFRSSIAMLPPIKSLLGDFQCELLGEIREDMDTLEELCAL-------IDRAIM 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P R IK G + +D R++ + + L K RE+ + NLK+ +N
Sbjct: 411 E-EPPISVRDGGL--IKDGYNEDVDKYRKAKTEGKTWLAELEAKEREKTGIKNLKIKYNK 467
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGE-- 291
G+YL + +KD+ +P F++ N T EL L +K E
Sbjct: 468 VFGYYLEVTNSYKDL---VPDYFMRKQTLANAERYITPELKELEDMILGAEDKLVTLEYD 524
Query: 292 --CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
C +R+ I E V + A+ + LD+ V S A + Y RP
Sbjct: 525 LFCEVRSTIAAE---------VVRIQRTAKAVAGLDVFV-SLALVADQ---NNYCRPKIN 571
Query: 350 ENGPLAIDGGRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIV 406
ENG + I GGRHP++E I+ND FI N+ ++ + + I+TGPNM+GKSTY++Q LIV
Sbjct: 572 ENGIIDIKGGRHPVVEKMINNDMFIDNDTYLDNGNHRISIITGPNMAGKSTYMRQTALIV 631
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQ+G YVPA + I +VDRIFTR+G D+L S STFM EM E A +++N + SL++
Sbjct: 632 LMAQLGSYVPAASAKIGIVDRIFTRVGASDDLASGQSTFMVEMNEVANILRNATSNSLLI 691
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYV 523
+DE+GR TS+ DG +IAW+ EH+ + L A T+FA+H L+EL NV ++ V
Sbjct: 692 LDEIGRGTSTYDGLSIAWAVVEHISNPKLLGAKTLFATHYHELTELEGKLNNVN--NYCV 749
Query: 524 VIRNNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
++ D F +K G YG+ +A++AG+P +VI A+ I ++ ++ +
Sbjct: 750 AVKEKGDDIVFLRKIVKGGADK--SYGIQVAKLAGVPDSVIARAKEIVEELSANDITEVA 807
Query: 581 IN 582
N
Sbjct: 808 RN 809
>gi|406936761|gb|EKD70405.1| hypothetical protein ACD_46C00541G0003 [uncultured bacterium]
Length = 860
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 172/565 (30%), Positives = 286/565 (50%), Gaps = 43/565 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE++ L + +++ +L +L TKT G+RLL+ L +PL+D ++
Sbjct: 271 LDAASRRNLELVTNL------SGSEENTLASVLDHTKTAMGSRLLKRWLNRPLRDRTILH 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ N F L + L + +R+L K T++ D
Sbjct: 325 ARQESVSALLENHAYTF-LQKTLHSI-ADFERILARIALK----TARPRD---------- 368
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+I L+ L LP L L+ + L + ++ E + + R +I+ +
Sbjct: 369 ---LIALRQTLALLPELQHQLQPFMTLRLQELKANIGEFPEQLDLLTRA--IIENPPVTI 423
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
R V I G D LD + + + L + ++ + LK+ +N
Sbjct: 424 RDGGV--------IARGYDAELDELLALSENAGDYLIKLEEQEKKRTGMSTLKVGYNRVH 475
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
GFY+ I Q +P+ +I+ N T EL + + SA R ++ E
Sbjct: 476 GFYIEISRLQAQA-VPADYIRRQTLKNAERFITPELKAFEDKALSARDRALSREKMLYEQ 534
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L+D + ++ L A+ + D++ N FA + + P T+ + I GRHP
Sbjct: 535 LLDLLMPQIAALQACAQAIAECDVLAN-FAERAAHL---NWCCPELTDEAGVEITEGRHP 590
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++ES+ + F+PNN+ + M+I+TGPNM GKSTY++Q+ LIV+L IG +VPA +
Sbjct: 591 VVESVSDKPFVPNNVLLDVKLRMLIITGPNMGGKSTYMRQIALIVLLTHIGSFVPAKAAK 650
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +DRIFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR TS+ DG +
Sbjct: 651 IGTIDRIFTRIGAADDLASGRSTFMVEMTETANILHNATSQSLVLMDEIGRGTSTFDGLS 710
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+C +L ++AYT+FA+H L+ LA VK +H + + F +++GP
Sbjct: 711 LAWACAHYLAQGVRAYTLFATHYFELTSLADEMSTVKNVHLDAAEHGDNIIFLHTVQEGP 770
Query: 541 RHVPHYGLLLAEVAGLPSTVIETAR 565
+ YG+ +A++AG+P VI A+
Sbjct: 771 AN-QSYGIQVAQLAGVPRAVIVRAK 794
>gi|238483645|ref|XP_002373061.1| DNA mismatch repair protein Msh4, putative [Aspergillus flavus
NRRL3357]
gi|220701111|gb|EED57449.1| DNA mismatch repair protein Msh4, putative [Aspergillus flavus
NRRL3357]
Length = 814
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 172/635 (27%), Positives = 314/635 (49%), Gaps = 104/635 (16%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +++ +LE+I+ L +A K SLF ++ + T G RLLRAN+LQP ++
Sbjct: 194 MLIDLSTIVSLELIQNLQNA-----RSKDSLFGLMNESLTPMGGRLLRANILQPSTEVSK 248
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++ R D +++L + ++F + V +K +
Sbjct: 249 LSARYDAVEDLSTKGEMF--------------------------------VSVRQGEKHR 276
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRS-------VCENEKYASIRKRIGE 173
+L S I+ N Y S +C + ++ + I
Sbjct: 277 SLASPIL-------------------------NCYASNFQQPSRLCAPAGHRAVEELIES 311
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
++E V + P R Q+ + ++ G++ LLD+AR+++ + + +L K
Sbjct: 312 TLNEYVTYQTRPLDLRNQRIYCVRAGVNSLLDVARQTYKEANMDAADLITK--------- 362
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
LS + LP FI + + N I C TL+L +N + A E
Sbjct: 363 ------------LSATEVNT---LPEVFINIYRKKNRIECQTLDLVKMNQKIIDAHNEVI 407
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
++ + L++ IR +++ L ++E + +LDM+ ++FA + Y R T+
Sbjct: 408 NMSDQTVHELIEDIRSEIAHLFKISEAIAMLDML-SAFAQLATNYD---YVRAELTD--V 461
Query: 354 LAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
LAI GRHPI E IH FIPN+ + ++ + I+TG NMSGKSTY++ + L+ I+AQIG
Sbjct: 462 LAIKSGRHPIREKIHTKKFIPNDAYATQQSRFQIITGCNMSGKSTYIRSLALMTIMAQIG 521
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
++PA +++ +V ++F R+ T D+LE+N STF EM+E AF+++N+ RS++++DELGR
Sbjct: 522 SFIPAEYASFPIVHQLFARVSTADDLEANVSTFAAEMREMAFILRNIESRSMVIVDELGR 581
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRL 530
TS++DG AIA + E L+ A F +H +L+ + V LH I +++
Sbjct: 582 GTSTTDGLAIAIAIAEALVESHALVWFVTHFHDLAVIMAERSGVVSLHLAAEISPDTSKM 641
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN--CLQYKQ 588
+++ +GP YGL LA++ LP V+E A++++ ++ + +R + ++
Sbjct: 642 TMLYKIAEGPETNRSYGLALAKLVDLPPGVLEYAQTVSEKMNQIAQRRHSKSRALAVSRK 701
Query: 589 IQMLYHAAQRLICLKYSNQDEESIRHALQNLKESF 623
++ ++L+ + + E++R L+ L++ F
Sbjct: 702 RNLILSLKEQLLQARDGKLEGETLRKWLKRLQDEF 736
>gi|409912343|ref|YP_006890808.1| DNA mismatch repair ATPase MutS-1 [Geobacter sulfurreducens KN400]
gi|298505934|gb|ADI84657.1| DNA mismatch repair ATPase MutS-1 [Geobacter sulfurreducens KN400]
Length = 871
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 189/587 (32%), Positives = 297/587 (50%), Gaps = 61/587 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +S RNLE+ +A G ++ SL +L T T G R L+ + PL IE IN
Sbjct: 270 LDESSRRNLEL-----NATIGDGKRRGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKIN 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++EL+++ + G+ R + +++ ++ + K
Sbjct: 325 ERLDAVEELVADAEFRQGV------------RAALDGVYDLERLNGRISLASASAKD--- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L+ +L LP L +L A S LLA + + + A + + IG I D
Sbjct: 370 ---LVALRASLVRLPSLIALLTPAASTLLARLRDGI---DLLADVEELIGRGIVPDP--- 420
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
PFV R + I G LD R + + L + + + +LK+ +N
Sbjct: 421 --PFVLR--EGGIIAQGYHSELDELRSISREGKGFIARLEAQEKARTGISSLKVRYNKVF 476
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE- 301
G+Y+ + ++ +P +I+ N T EL K E I + LE
Sbjct: 477 GYYIEVTKSNLSA-IPDDYIRRQTLANAERFITPELKEYE--EKVLGAEDRI---VELEY 530
Query: 302 ALVDAIREDVSV----LTLLAEVLCLLDMI--VNSFAHTISTKPVDRYTRPHFTENGPLA 355
AL IR+ V+ + A+ L LD++ + AH RY RP E +
Sbjct: 531 ALFQDIRQRVAAQGERIARTADRLATLDVLAALADVAHD------HRYVRPTVDEGDAIV 584
Query: 356 IDGGRHPILESIHND--FIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
+ GGRHP++E+++ F+ N++ + N +VI+TGPNM+GKST+++QV LIV++AQ G
Sbjct: 585 VTGGRHPVVEALNRSERFVANDVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTG 644
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA ++I VVDRIFTR+G DNL STFM EM ETA +++N + RSL+V+DE+GR
Sbjct: 645 SFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGR 704
Query: 473 ATSSSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
TS+ DG +IAW+ E+L + A T+FA+H L+ELA VK + V N++
Sbjct: 705 GTSTFDGVSIAWAVAEYLHDTERCAAKTLFATHYHELTELAVTRNRVKNCNVAVKEWNDQ 764
Query: 530 LDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ F ++ + G H YG+ +A +AGLP VIE A+ I + K E
Sbjct: 765 VIFLRKIVEGGASH--SYGIQVARLAGLPQEVIERAKEILHNLEKGE 809
>gi|300711943|ref|YP_003737757.1| DNA mismatch repair protein MutS [Halalkalicoccus jeotgali B3]
gi|448295633|ref|ZP_21485697.1| DNA mismatch repair protein MutS [Halalkalicoccus jeotgali B3]
gi|299125626|gb|ADJ15965.1| DNA mismatch repair protein MutS [Halalkalicoccus jeotgali B3]
gi|445583732|gb|ELY38061.1| DNA mismatch repair protein MutS [Halalkalicoccus jeotgali B3]
Length = 882
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 174/579 (30%), Positives = 288/579 (49%), Gaps = 57/579 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + R+LE+ EP A+ G S + ++ +L T G R L L +PL D
Sbjct: 277 MLLDRVAFRSLELFEP--RAVGGDS--EHTILGVLDETACALGRRKLTDWLRRPLLDRAR 332
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD + E + G P+ET L + +++ ++V + +
Sbjct: 333 IEARLDAVSEWTT----LVG--------PRETVHDLLSDVYDIERLIARV------SRGR 374
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LK LD +P + + +S L + + E E + E+ID +
Sbjct: 375 ANARDLRALKDTLDRVPEIRAAMAGVESDTLHELREGLDELEG-------VRELIDRAI- 426
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A P + T+ I G D LD R + + E + +L + RE + +LK+ FN
Sbjct: 427 -AESPPIEITEGDV-IAPGYDADLDGLRETEREGKEWIDSLEARERERTGVDSLKVGFNQ 484
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL-----ELASLNVRNKSAAGECY 293
G+Y+ + + +++ ++P + Q +K+ + L E+ + R E +
Sbjct: 485 VHGYYIEVTNPNLE-RVPENYTRRQTLKNSERFYTPELKQREDEIITAEERADDLEYELF 543
Query: 294 I--RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
+ R E+ E+ + +AE L LD++V+ A Y RP E
Sbjct: 544 VEVRQEVAGES---------ERVQAVAETLATLDVLVSLAAVAAKYG----YARPEIDEE 590
Query: 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
+AI+GGRHP++E F+PN ++ + ++TGPNMSGKSTY++Q+ LI ILAQI
Sbjct: 591 PGIAIEGGRHPVVERTQESFVPNGAELTPDERLAVLTGPNMSGKSTYMRQIALITILAQI 650
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + I +VDR+FTR+G D++ STFM EM E A +++ SERSL+++DE+G
Sbjct: 651 GSFVPASRARIGIVDRVFTRVGASDDIAGGRSTFMVEMSELATILRGASERSLVLLDEVG 710
Query: 472 RATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS++DG AIA + E++ S + A T+FA+H L+ELA LHF ++ +
Sbjct: 711 RGTSTADGLAIARAITEYVHSEVGALTLFATHHHELTELADALAGGFNLHFAATQTDDGV 770
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
F+ + G YG+ +A AG+P V+E +R++ +
Sbjct: 771 TFRHDVSRGA-ATASYGIEVARAAGVPDRVVERSRALVA 808
>gi|334119831|ref|ZP_08493915.1| DNA mismatch repair protein mutS [Microcoleus vaginatus FGP-2]
gi|333457472|gb|EGK86095.1| DNA mismatch repair protein mutS [Microcoleus vaginatus FGP-2]
Length = 875
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 184/588 (31%), Positives = 290/588 (49%), Gaps = 65/588 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + ++ SL + T T G R LR +LQPL I+ I
Sbjct: 306 LDYQTRRNLEITQTVRDGVF-----HGSLLWAIDKTSTAMGGRALRRWVLQPLLSIKGIG 360
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + EL+ N L L Q LR+ + +++T + A
Sbjct: 361 ARHDTIQELVENNALRQDLQQLLRQI------------YDIERLTGR------AGSGTAS 402
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L +L LP LA + S L + E+ A+ K ++DE +H
Sbjct: 403 ARDLVALADSLGKLPALASIAAQGISPYLKALQNVPPILEELAT--KIHAHLVDEPPIHL 460
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ + I+ GI+ +LD R + + NLA R+ + NLK+ +N
Sbjct: 461 K--------EGGLIRPGINPMLDEMRETASADLVWITNLAENERKRTGISNLKVAYNKAF 512
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE---------CY 293
G+Y+SI + ++P+ +I+ N ST EL VR +A +
Sbjct: 513 GYYISISKSKVD-QVPNDYIRKQTLTNEERYSTEELKEREVRILTAREDLNQLEYDIFAQ 571
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+R+E+ A I +VS A+VLC L + Y RP TE+
Sbjct: 572 VRSEVGEHA---EIIRNVSRAVAAADVLCGLAEVAV----------YQNYCRPTMTESRE 618
Query: 354 LAIDGGRHPILES--IHNDFIPNNIFISEA-----ANMVIVTGPNMSGKSTYLQQVCLIV 406
+ I G HP++E F+PN+ F+ +++I+TGPN SGKS YL+QV LI
Sbjct: 619 IKIIEGCHPVVEKSLPPGFFVPNSAFLGREESLNRPDLIILTGPNASGKSCYLRQVGLIQ 678
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQ+G YVPA +++ + DRIFTR+G VD+L + STFM EM ETA ++ + + +SL++
Sbjct: 679 LMAQMGSYVPAKAASLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATPQSLVL 738
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
+DE+GR T++ DG +IAWS E+L + ++A TIFA+H L+ELA+I NV V
Sbjct: 739 LDEIGRGTATFDGLSIAWSVAEYLATEIRARTIFATHYHELNELASILDNVANYQVTVKE 798
Query: 526 RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++ F Q++ G YG+ +AGLP +VI+ AR + +I K
Sbjct: 799 LPDQIVFLHQVQPGGAD-KSYGIEAGRLAGLPPSVIDRARQVMKQIEK 845
>gi|291522251|emb|CBK80544.1| DNA mismatch repair protein MutS [Coprococcus catus GD/7]
Length = 882
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 186/593 (31%), Positives = 303/593 (51%), Gaps = 67/593 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ + RNLE+IE L KK SL +L TKT G RL+R + QPL + +
Sbjct: 267 MIIDSATNRNLELIETLRE-----KQKKGSLLWVLDKTKTAMGARLMRNWIEQPLIEKKK 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D ++EL ++ + ++L + +R++ ++ T+ D
Sbjct: 322 ITARQDAVEELYNDMITREEIREYLNAV-YDLERLVTRISYR----TANPRD-------- 368
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANI-YRSVCENEKYASIRKRIGEVIDEDV 179
+I KT+L +P + ++L A+S L I R C + Y I K I +
Sbjct: 369 -----LIAFKTSLGMIPPVKQLLSQAKSAELKEIDERMDCLEDIYDLIEKSIQD------ 417
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + R + IK G + +D R S + + L + +E+ + NL++ +N
Sbjct: 418 ---EPPIMIR--EGGMIKEGYNEDVDKFRLSRTEGKTWLAELEAREKEKTGIKNLRVRYN 472
Query: 240 NRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGEC 292
G+YL + +K++ +P + + N T EL L +K AA E
Sbjct: 473 KVFGYYLEVTNSYKEL---VPEDWTRKQTLANAERYITPELKELEDMILGAEDKLAALEY 529
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
+ E+ D+I E V + A+ + LD++ A + Y RP G
Sbjct: 530 DLYCEVR-----DSIGEQVVRIQETAKAIAHLDVL----ASLACVAQSNDYVRPSINTKG 580
Query: 353 PLAIDGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILA 409
+ I GGRHP++E ++N+ FI N+ ++ + + I+TGPNM+GKSTY++Q LIV++A
Sbjct: 581 VIDIQGGRHPVVEKMNNNQMFIDNDTYLDNKNHRISIITGPNMAGKSTYMRQSALIVLMA 640
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
QIG +VPA + I +VDRIFTR+G D+L S STFM EM E A +++N + RSL+++DE
Sbjct: 641 QIGSFVPAKSANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSRSLLILDE 700
Query: 470 LGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
+GR TS+ DG +IAW+ EH+ + L A T+FA+H L+EL +V ++ + +R
Sbjct: 701 IGRGTSTFDGLSIAWAVVEHISNPKLLGAKTLFATHYHELTELEGKLDSVN--NYCIAVR 758
Query: 527 NNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
D F ++ G YG+ +A +AG+P +VI+ A+ I S + + +V
Sbjct: 759 EQGDDIIFLRKIIRGGADK--SYGIQVARLAGVPDSVIDRAKEIASWLEETDV 809
>gi|253999524|ref|YP_003051587.1| DNA mismatch repair protein MutS [Methylovorus glucosetrophus
SIP3-4]
gi|253986203|gb|ACT51060.1| DNA mismatch repair protein MutS [Methylovorus glucosetrophus
SIP3-4]
Length = 859
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 174/583 (29%), Positives = 283/583 (48%), Gaps = 52/583 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ DA S RNLEI + L +L+ +L T +T G RLLR L PL+D
Sbjct: 272 IQFDAASRRNLEIDQTLRG------EPAPTLYSLLNTCRTAMGARLLRHWLHHPLRDHAA 325
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK---ETDRVLCHFCFKPKKVTSKVLDVDNAK 117
I RL+ + L+ + L Q R+ + +R+ K +++ D+ +
Sbjct: 326 IQARLEAVAALLQGDAL-----QAPRRLLNNIGDIERITARVALK----SARPRDLSGLR 376
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLL--ANIYRSVCENEKYASIRKRIGEVI 175
S + + L+ +L LP + +L+ A + L A + + A+IR V+
Sbjct: 377 DS---LQQLPELQQSLAGLP--SALLQQAMALLQPPAEVTSLLA-----AAIRPEPSSVL 426
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
E + I G D LD R + E + + R L NLK
Sbjct: 427 REGGV---------------IADGYDAELDELRGIQTNCGEFLLKFEAEERARTGLANLK 471
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +N+ GFY+ I + P+ + + N T EL + + SA R
Sbjct: 472 VEYNSVHGFYIEISRAQAE-HAPAEYRRRQTLKNAERFITPELKTFEDKVLSANERALAR 530
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ +AL+DA+ + L A + LD+I +FA Y +P FT +
Sbjct: 531 EKALYDALLDALAPYIQALQANAHAVAQLDVIA-TFAERAQAL---NYVQPEFTAEAGIQ 586
Query: 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
I GRHP++E + FI N++ ++ ++++TGPNM GKSTY++Q LIV+LA GC+V
Sbjct: 587 ITAGRHPVVEQLAQPFIANDVQLTPYRQLLLITGPNMGGKSTYMRQTALIVLLAHCGCFV 646
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VDRIFTR+G D+L STFM EM ETA ++ N +E SL+++DE+GR TS
Sbjct: 647 PAKAARIGQVDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATEHSLVLLDEIGRGTS 706
Query: 476 SSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG ++AW+ LL ++YT+FA+H L+ L + +H V N + F
Sbjct: 707 TFDGLSLAWAVARQLLERNRSYTLFATHYFELTRLVEDFKQAANVHLDAVEHGNGIVFLH 766
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
+++GP YGL +A++AG+P +V+ A+ ++ ++ ++
Sbjct: 767 AVQEGPASQ-SYGLQVAQLAGIPRSVVNAAKRKLVQLEQQNIQ 808
>gi|27597156|dbj|BAC55150.1| ORF23 [Methylobacillus sp. 12S]
Length = 863
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 177/583 (30%), Positives = 280/583 (48%), Gaps = 52/583 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ DA S RNLEI + L +L+ +L T +T G RLLR L PL+D
Sbjct: 272 IQFDAASRRNLEIDQTLRG------ESAPTLYSLLNTCRTAMGARLLRQWLHHPLRDHAA 325
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ + L+ + L + R L + +++T++V A KS
Sbjct: 326 IQARLEAVAALLHGDAL-------------QAPRRLLNNIGDIERITARV-----ALKS- 366
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLAN---IYRSVCENEKY--ASIRKRIGEVI 175
+ L+ +L LP L + L S LL + + E A+IR V+
Sbjct: 367 ARPRDLSGLRDSLQQLPELQQSLAGLPSALLQQAMVLLQPPAEVTSLLAAAIRPEPSSVL 426
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
E + I G D LD R + E + + R L NLK
Sbjct: 427 REGGV---------------IADGYDAELDELRGIQTNCGEFLLKFEAEERARTGLANLK 471
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +N+ GFY+ I + P+ + + N T EL + + SA R
Sbjct: 472 VEYNSVHGFYIEISRAQAE-HAPAEYRRRQTLKNAERFITPELKTFEDKVLSANERALAR 530
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ +AL+DA+ + L A + LD+I +FA Y +P FT +
Sbjct: 531 EKALYDALLDALAPYIQALQANAHAVAQLDVIA-TFAERAQAL---NYVQPEFTAEAGIQ 586
Query: 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
I GRHP++E + FI N++ ++ ++++TGPNM GKSTY++Q LIV+LA GC+V
Sbjct: 587 ITAGRHPVVEQLAQPFIANDVQLTPYRQLLLITGPNMGGKSTYMRQTALIVLLAHCGCFV 646
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VDRIFTR+G D+L STFM EM ETA ++ N +E SL+++DE+GR TS
Sbjct: 647 PAKAARIGQVDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATEHSLVLLDEIGRGTS 706
Query: 476 SSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG ++AW+ LL ++YT+FA+H L+ L + +H V N + F
Sbjct: 707 TFDGLSLAWAVARQLLERNRSYTLFATHYFELTRLVEDFKQAANVHLDAVEHGNGIVFLH 766
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
+++GP YGL +A++AG+P +V+ A+ ++ ++ ++
Sbjct: 767 AVQEGPASQ-SYGLQVAQLAGIPRSVVNAAKRKLVQLEQQNIQ 808
>gi|350564311|ref|ZP_08933129.1| DNA mismatch repair protein MutS [Thioalkalimicrobium aerophilum
AL3]
gi|349777789|gb|EGZ32151.1| DNA mismatch repair protein MutS [Thioalkalimicrobium aerophilum
AL3]
Length = 875
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 175/581 (30%), Positives = 289/581 (49%), Gaps = 47/581 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H + +LFH+L +T G+RLLR L QPL+ E I
Sbjct: 269 LDAITRRNLEL--DTHQ----QGFQHHTLFHLLDHCQTPMGSRLLRRWLRQPLRRREQIL 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL +D L+ N+Q L L+ + +R+L +++ D+ +S T
Sbjct: 323 QRLSVVDCLVMNQQ-HSQLQAHLKPI-GDLERILSRVALS----SARPRDLSQLGRSLTA 376
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ ++ T + + L+ + ++ L + R++ E
Sbjct: 377 LPGLLDWATQWEEVHWLSSQINSFET-LADELARAIVEQP-------------------- 415
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R F K G D LD + + +L + RE L +LK+ FN Q
Sbjct: 416 --PLLLREGGVF--KTGYDPELDQLLALKTQAGDYLTDLEKRERERTGLASLKIGFNRVQ 471
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + K ++P + + N T EL + + SA + R + E
Sbjct: 472 GYYIEL-SKQYSDQVPLDYTRRQTLKNAERYITAELKNFETQILSADDKAQAREQALYEQ 530
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR-YTRPHFTENGPLAIDGGRH 361
L+ I+ + L L LD++ N +T+ + R Y RP F + L I+ GRH
Sbjct: 531 LLTKIQAQLIPLQQTVHALAALDVLAN-----FATQALARNYARPTFQDQPGLLIEQGRH 585
Query: 362 PILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
P +E++ H+ FI N+ + + I+TGPNM GKSTY++Q +I I+A +GC+VPA +
Sbjct: 586 PTVEALSHDPFISNDAEFDDRRRLHIITGPNMGGKSTYMRQTAIITIMAHMGCFVPAKQA 645
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
+DRIFTR+G D+L S STFM EM ETA ++++ S SLI+MDE+GR TS+ DG
Sbjct: 646 CFGPIDRIFTRIGASDDLTSGRSTFMVEMTETAHILRHASAESLILMDEVGRGTSTFDGL 705
Query: 481 AIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
A+AW+ ++L + +K + +FA+H L+ LA + N +H + + + F Q+K G
Sbjct: 706 ALAWAIGDYLATQVKGFCLFATHYFELTNLAEQFDNTVNMHLTAIEHQDSIVFLHQVKPG 765
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
P YGL +A +AG+PS VI A+ + + ++++ ++
Sbjct: 766 PASQ-SYGLQVAALAGVPSAVITQAKMRLNELEQRDMSALK 805
>gi|262278524|ref|ZP_06056309.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262258875|gb|EEY77608.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 879
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 171/582 (29%), Positives = 303/582 (52%), Gaps = 45/582 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +++L+ + + K + +RVL +++ D+ + +
Sbjct: 330 ARLDAIEQLIQG--YHESPVRLVLKEIGDIERVLSRVALG----SARPRDLVQLRHA--- 380
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ I L+TAL V++ +S LL + + + + + ++ + + I E+
Sbjct: 381 CAQIPALRTAL------TPVIQAKKSKLLVQLDQELGD---FKALHQHLMAAIVENP--- 428
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G D LD R+ + + +L K RE + LK+ +N
Sbjct: 429 --PVLLRDGNVIA--EGYDADLDELRQIRDHAGQFLIDLEIKERERTGINTLKIGYNRVS 484
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + + P+ +I+ N T EL S + S+ R + EA
Sbjct: 485 GYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKALFEA 543
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ +RE+++ L +++ + +D++ N FAH ++ + RP FT + I GRHP
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVVAN-FAHQAR---LNNWARPEFTPETGIKIQAGRHP 599
Query: 363 ILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E+++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G Y+PA +
Sbjct: 600 VVEALNKAPFTPNDTFLDSQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYIPAKAAK 659
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+ DG +
Sbjct: 660 LGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTYDGLS 719
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQLKD 538
+AW+C L +K +FA+H L+EL I +++V + N L +++
Sbjct: 720 LAWACVVDLTKRVKCLCLFATHYFELTELGG---EAGIDNYHVTAQELNGNLILLHKVQQ 776
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 777 GPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|39996921|ref|NP_952872.1| DNA mismatch repair protein MutS [Geobacter sulfurreducens PCA]
gi|48428288|sp|P61667.1|MUTS_GEOSL RecName: Full=DNA mismatch repair protein MutS
gi|39983809|gb|AAR35199.1| DNA mismatch repair ATPase MutS-1 [Geobacter sulfurreducens PCA]
Length = 871
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 189/587 (32%), Positives = 297/587 (50%), Gaps = 61/587 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +S RNLE+ +A G ++ SL +L T T G R L+ + PL IE IN
Sbjct: 270 LDESSRRNLEL-----NATIGDGKRRGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKIN 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++EL+++ + G+ R + +++ ++ + K
Sbjct: 325 ERLDAVEELVADAEFRQGV------------RAALDGVYDLERLNGRISLASASAKD--- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L+ +L LP L +L A S LLA + + + A + + IG I D
Sbjct: 370 ---LVALRASLVRLPSLIALLTPAASTLLARLRDGI---DLLADVEELIGRGIVPDP--- 420
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
PFV R + I G LD R + + L + + + +LK+ +N
Sbjct: 421 --PFVLR--EGGIIAQGYHSELDELRSISREGKGFIARLEAQEKARTGISSLKVRYNKVF 476
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE- 301
G+Y+ + ++ +P +I+ N T EL K E I + LE
Sbjct: 477 GYYIEVTKSNLSA-IPDDYIRRQTLANAERFITPELKEYE--EKVLGAEDRI---VELEY 530
Query: 302 ALVDAIREDVSV----LTLLAEVLCLLDMI--VNSFAHTISTKPVDRYTRPHFTENGPLA 355
AL IR+ V+ + A+ L LD++ + AH RY RP E +
Sbjct: 531 ALFQDIRQRVAAQGERIARTADRLATLDVLAALADVAHD------HRYVRPTVDEGDAIV 584
Query: 356 IDGGRHPILESIHND--FIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
+ GGRHP++E+++ F+ N++ + N +VI+TGPNM+GKST+++QV LIV++AQ G
Sbjct: 585 VTGGRHPVVEALNRSERFVANDVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTG 644
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA ++I VVDRIFTR+G DNL STFM EM ETA +++N + RSL+V+DE+GR
Sbjct: 645 SFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGR 704
Query: 473 ATSSSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
TS+ DG +IAW+ E+L + A T+FA+H L+ELA VK + V N++
Sbjct: 705 GTSTFDGVSIAWAVAEYLHDTERCAAKTLFATHYHELTELAVTRNRVKNCNVAVKEWNDQ 764
Query: 530 LDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ F ++ + G H YG+ +A +AGLP VIE A+ I + K E
Sbjct: 765 VIFLRKIVEGGASH--SYGIQVARLAGLPQEVIERAKEILHNLEKGE 809
>gi|226324941|ref|ZP_03800459.1| hypothetical protein COPCOM_02733 [Coprococcus comes ATCC 27758]
gi|225206289|gb|EEG88643.1| DNA mismatch repair protein MutS [Coprococcus comes ATCC 27758]
Length = 883
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 182/588 (30%), Positives = 302/588 (51%), Gaps = 57/588 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ + RNLE++E L K+ SL +L TKT G R LR + QPL D E+
Sbjct: 268 MVLDSATRRNLELVETLRE-----KQKRGSLLWVLDKTKTAMGARTLRKYVEQPLIDKES 322
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD + EL N + ++L + +R++ ++ N +
Sbjct: 323 IVKRLDAVAELKDNAICREEIREYLNPV-YDLERLVGKITYQSA----------NPR--- 368
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I +++L LP + +LKD +S LL IY + E+ + +G I E+
Sbjct: 369 ----DLIAFQSSLSMLPSVKCILKDMESDLLKEIYEELDPLEELCDL---VGRAIQEE-- 419
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A ++ IK G + +D R++ + + +L K RE+ + NL++ +N
Sbjct: 420 ----PPLA-MKEGGIIKDGYNEEVDRLRKAKSEGKNWLADLETKEREKTGIKNLRIRYNK 474
Query: 241 RQGFYLSIPH--KDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTE 297
G+YL + + KD+ +P + + N EL L A + C + E
Sbjct: 475 VFGYYLEVTNSFKDL---VPDYYTRKQTLANAERYIIPELKELEDTILGAEDKLCALEYE 531
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
+ E + + I +++ + A+ + LD+I A + Y RP E G + I
Sbjct: 532 LYCE-VRNTIAAELTRIQRTAKAVAKLDVI----ASLALVAERNNYVRPKINEKGVIDIR 586
Query: 358 GGRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E I ND FI N+ ++ + + I+TGPNM+GKSTY++Q LIV++AQ+G +
Sbjct: 587 DGRHPVVEKMIPNDMFIANDTYLDDKKQRISIITGPNMAGKSTYMRQAALIVLMAQLGSF 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +VDRIFTR+G D+L S STFM EM E A +++N + +SL+++DE+GR T
Sbjct: 647 VPASSANIGLVDRIFTRVGASDDLASGQSTFMVEMNEVANILRNATSKSLLILDEIGRGT 706
Query: 475 SSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAW+ E++ + L A T+FA+H L+EL NV ++ + ++ D
Sbjct: 707 STFDGLSIAWAVVEYISNSKLLGAKTLFATHYHELTELEGKISNVN--NYCIAVKEKGDD 764
Query: 532 FKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F +K G YG+ +A++AG+P VI A+ I + ++
Sbjct: 765 IVFLRKIVKGGADK--SYGIQVAKLAGVPDPVINRAKEIVEELVTADI 810
>gi|313201553|ref|YP_004040211.1| DNA mismatch repair protein muts [Methylovorus sp. MP688]
gi|312440869|gb|ADQ84975.1| DNA mismatch repair protein MutS [Methylovorus sp. MP688]
Length = 859
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 174/583 (29%), Positives = 283/583 (48%), Gaps = 52/583 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ DA S RNLEI + L +L+ +L T +T G RLLR L PL+D
Sbjct: 272 IQFDAASRRNLEIDQTLRG------EPAPTLYSLLNTCRTAMGARLLRHWLHHPLRDHAA 325
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK---ETDRVLCHFCFKPKKVTSKVLDVDNAK 117
I RL+ + L+ + L Q RK + +R+ K +++ D+ +
Sbjct: 326 IQARLEAVAALLQGDAL-----QAPRKLLNNIGDIERITARVALK----SARPRDLSGLR 376
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLL--ANIYRSVCENEKYASIRKRIGEVI 175
S + + L+ +L +LP + +L+ A + L A + + A+IR V+
Sbjct: 377 DS---LQQLPELQQSLTSLP--SALLQQAMALLQPPAEVTSLLA-----AAIRPEPSSVL 426
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
E + I G D LD R + E + + R L NLK
Sbjct: 427 REGGV---------------IADGYDAELDELRGIQTNCGEFLLKFEAEERARTGLANLK 471
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +N+ GFY+ I + P+ + + N T EL + + SA R
Sbjct: 472 VEYNSVHGFYIEISRAQAE-HAPAEYRRRQTLKNAERFITPELKTFEDKVLSANERALAR 530
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ +AL+DA+ + L A + LD+I A + Y +P FT +
Sbjct: 531 EKALYDALLDALAPYIQALQANAHAVAELDVI----ATFVERAQALNYVQPEFTAEAGIQ 586
Query: 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
I GRHP++E + FI N++ ++ ++++TGPNM GKSTY++Q LIV+LA GC+V
Sbjct: 587 ITAGRHPVVEQLAQPFIANDVQLTPYRQLLLITGPNMGGKSTYMRQTALIVLLAHCGCFV 646
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VDRIFTR+G D+L STFM EM ETA ++ N +E SL+++DE+GR TS
Sbjct: 647 PAKAARIGQVDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATEYSLVLLDEIGRGTS 706
Query: 476 SSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG ++AW+ LL ++YT+FA+H L+ L + +H V N + F
Sbjct: 707 TFDGLSLAWAVARQLLERNRSYTLFATHYFELTRLVEDFKQAANVHLDAVEHGNGIVFLH 766
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
+++GP YGL +A++AG+P +V+ A+ ++ ++ ++
Sbjct: 767 AVQEGPASQ-SYGLQVAQLAGIPRSVVNAAKRKLVQLEQQNIQ 808
>gi|255021391|ref|ZP_05293439.1| DNA mismatch repair protein MutS [Acidithiobacillus caldus ATCC
51756]
gi|340782244|ref|YP_004748851.1| DNA mismatch repair protein MutS [Acidithiobacillus caldus SM-1]
gi|254969254|gb|EET26768.1| DNA mismatch repair protein MutS [Acidithiobacillus caldus ATCC
51756]
gi|340556397|gb|AEK58151.1| DNA mismatch repair protein MutS [Acidithiobacillus caldus SM-1]
Length = 853
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 167/569 (29%), Positives = 284/569 (49%), Gaps = 52/569 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D S+ LE++ G SL+ +L+ +T G RLLRA L +PL+
Sbjct: 268 LGLDGESLSALEVL--------GGREGGPSLYQILQHCRTAMGARLLRAQLARPLRPGPI 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS- 119
++ R L L++ ++ L + LR P + +R++ ++ D+ ++
Sbjct: 320 LDRRHRALAALIA-QRGHLRLQEQLRHLP-DAERIVTRVALG----SASPRDLGQLRQFL 373
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
QTL + L TAL L + F ++ + C + + + ++ED+
Sbjct: 374 QTLPTLQTALATALGGESELGE-------FPWPDLS-AQC---------RLLEQALEEDL 416
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
A + I+ G + LD R+ + + + L RE +P L+L +N
Sbjct: 417 -------PATLRDGGYIRTGFNADLDHHRQLSENLQQVLVELEQSERERSGIPQLRLQYN 469
Query: 240 NRQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
QG ++ IP + G LP+ + Q +H S L L ++ +A
Sbjct: 470 RVQGLFIEIP-RSYTGPLPADYQRRQSTRHAERF--SNPRLKELETQSLAAESRAKTLER 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
C ++ + E + L L + + D+ N ++ R++ P F + L ID
Sbjct: 527 ACFGDILRQLAERIGELQWLCQRVAQWDVCANLAERALAL----RWSAPSFCDAPVLEID 582
Query: 358 GGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + F+PN++ + ++++TGPNM GKSTY++Q +IV+LA IG +VP
Sbjct: 583 EGRHPVVEMQLGAGFVPNDLRFDDEHRLLLLTGPNMGGKSTYMRQTAIIVLLAHIGSWVP 642
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + + +DRIFTR+G D+L STF+ EM+ETA ++ ++ SL+++DE+GR TS+
Sbjct: 643 ARRARLGPIDRIFTRIGASDDLAGGRSTFLVEMQETARILNLATDHSLVLLDEIGRGTST 702
Query: 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG AIAW+C E L +AYT+FA+H L+EL YP V H + R+ + F ++
Sbjct: 703 YDGLAIAWACLESLAEKRAYTLFATHYFELTELQ--YPGVHNAHLTAMTRDKDIVFLHRV 760
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+ GP +G+ +A +AGLP TV+E AR
Sbjct: 761 EPGP-ATQSFGIAVARLAGLPETVLENAR 788
>gi|343509704|ref|ZP_08746967.1| DNA mismatch repair protein MutS [Vibrio scophthalmi LMG 19158]
gi|342803886|gb|EGU39233.1| DNA mismatch repair protein MutS [Vibrio scophthalmi LMG 19158]
Length = 855
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 285/578 (49%), Gaps = 47/578 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI H+ G +N +L +L T T G+R+L+ L QP++ +T+N
Sbjct: 266 LDAATRRNLEIT---HNLAGGLTN---TLAEVLDKTATPMGSRMLKRWLHQPMRCADTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ + LF L L++ + +R+L + +
Sbjct: 320 QRLDAISEI-KDLSLFGDLLPVLKQI-GDIERILARLALRSARP---------------- 361
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP LA V+ D LA K A I +V D E +
Sbjct: 362 -RDLARLRHAMQQLPELATVINDLNHPYLA----------KLAQYAAPIDDVCDLLERAV 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + I G LD R +E + L + RE + LK+ +N
Sbjct: 411 KENPPVVIR--EGGVIASGYSAELDEWRDLADGATEYLDKLEREERERHGIETLKVGYNA 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
GF++ + + +P+ +++ N EL + S+ + +
Sbjct: 469 VHGFFIQV-SRGQSHLVPAHYVRRQTLKNAERYIIPELKEHEDKVLSSKSKALSIEKKLW 527
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L D + + L LA + LD++ N S Y RP T + I GGR
Sbjct: 528 EELFDLLMPHLEPLQNLASAVSQLDVLQNLAERADSLD----YCRPTLTTQPGINILGGR 583
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + ++ FI N + ++ + M+IVTGPNM GKSTY++Q LI ++A IG YVPA
Sbjct: 584 HPVVEQVMDEPFIANPVALNASRKMLIVTGPNMGGKSTYMRQTALIALMAHIGSYVPAES 643
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ I ++DRIFTR+G D+L S STFM EM ETA ++ N +ERSL++MDE+GR TS+ DG
Sbjct: 644 AQIGLIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATERSLVLMDEIGRGTSTYDG 703
Query: 480 FAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
++AW+ E L + A T+FA+H L+EL P++ +H V + + F +++
Sbjct: 704 LSLAWASAEFLAKQIGALTLFATHYFELTELPNQIPHLANVHLDAVEHGDSIAFMHAVQE 763
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
G YGL +A +AG+P VI+ AR+ +++ + V
Sbjct: 764 GAAS-KSYGLAVAGLAGVPKAVIKQARTKLTQLEQLSV 800
>gi|293608587|ref|ZP_06690890.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427423559|ref|ZP_18913709.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-136]
gi|292829160|gb|EFF87522.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425699663|gb|EKU69270.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-136]
Length = 879
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 176/586 (30%), Positives = 302/586 (51%), Gaps = 53/586 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQ----FLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
RLD + EQL G + + K + +RVL +++ D+ +
Sbjct: 330 ARLDAI------EQLIQGYHENPVRLVLKEIGDIERVLSRVALG----SARPRDLVQLRH 379
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+ + I L+TAL V++ +S LL + + + + ++ + + I E+
Sbjct: 380 A---CAQIPALRTAL------TPVIQAKKSKLLVQLDEELGD---FKALHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGINTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALSREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQA 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E+++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALNKAPFTPNDTFLDAQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 KAVKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L +K +FA+H L+EL + I +++V + N L
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS---EAGIDNYHVTAQELNGNLILLH 772
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+++ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 773 KVQQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|428298685|ref|YP_007136991.1| DNA mismatch repair protein MutS [Calothrix sp. PCC 6303]
gi|428235229|gb|AFZ01019.1| DNA mismatch repair protein MutS [Calothrix sp. PCC 6303]
Length = 862
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 185/598 (30%), Positives = 296/598 (49%), Gaps = 77/598 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + SL L T T G R LR LLQPL D+ I
Sbjct: 303 VDYQTRRNLEITQTIRDGTY-----HGSLLWALDRTSTAMGGRALRRWLLQPLLDVRGIA 357
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + EL+ N L Q LR+ K+ + +++T + + K +
Sbjct: 358 ARQDTIAELVENTSL----RQDLRRLLKQ--------IYDLERLTGRT---GSGKANARD 402
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ + L +L LP LA ++ +A+S L + + E E A K +++ +H
Sbjct: 403 LGA---LAESLSKLPELASIVAEARSPFLKALQKVPTELETLAE--KISAHLVESPPIHI 457
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ + I+ GI+ +LD + + + NL R + + NLK+ FN
Sbjct: 458 K--------EGGLIRSGINEMLDQRKALVEEDQRWIANLEVDERAKTGVQNLKVGFNKTF 509
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+SI ++PS +I+ N T+EL R +A + Y ++ E
Sbjct: 510 GYYISISRAKAD-QVPSNYIRKQTLTNEERYITIELKERETRILNAQDDLY---QLEYEI 565
Query: 303 LVDAIREDVSVLTLL----------AEVLC-LLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
V A+RE+V+V + A+VLC L ++ V + Y RP E
Sbjct: 566 FV-ALREEVAVYAEIIRNISRAVAAADVLCGLAELAV-----------IQGYCRPQMVEG 613
Query: 352 GPLAIDGGRHPILESI--HNDFIPNNIFISE-------------AANMVIVTGPNMSGKS 396
+ + GRHP++E F+PN + + ++VI+TGPN SGKS
Sbjct: 614 REIYVVDGRHPVVEQSLPAGFFVPNTCRLGADTENNNSGNSHNPSPDLVILTGPNASGKS 673
Query: 397 TYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVM 456
YL+Q LI I+AQIG +VPA ++ + + DRIFTR+G VD+L + STFM EM ETA ++
Sbjct: 674 CYLRQTGLIQIMAQIGSFVPAKYAKLGICDRIFTRVGAVDDLATGQSTFMVEMNETANIL 733
Query: 457 QNVSERSLIVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPN 515
+ + +SL+++DE+GR T++ DG +IAW+ E+L + +K+ TIFA+H L+ELA I PN
Sbjct: 734 NHATAKSLVLLDEIGRGTATFDGLSIAWAVGEYLAMEIKSRTIFATHYHELNELAGILPN 793
Query: 516 VKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
V V ++L F Q++ G YG+ +AGLP+ VI+ A+ + +I +
Sbjct: 794 VANYQVTVKEMPDKLIFLHQVQPGGAQ-KSYGIEAGRLAGLPAVVIQRAKQVMGQIEQ 850
>gi|169342625|ref|ZP_02863669.1| DNA mismatch repair protein MutS [Clostridium perfringens C str.
JGS1495]
gi|169299267|gb|EDS81336.1| DNA mismatch repair protein MutS [Clostridium perfringens C str.
JGS1495]
Length = 909
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 176/575 (30%), Positives = 303/575 (52%), Gaps = 48/575 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL N + ++ + I + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNL---DDLRDIYDLLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G +G +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNGEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNMSGKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMSGKSTYMRQVAIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++ +G YG+ +A++AG+P VI A+ I
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDEVINRAKEI 795
>gi|448597191|ref|ZP_21654329.1| DNA mismatch repair protein MutS [Haloferax alexandrinus JCM 10717]
gi|445741072|gb|ELZ92577.1| DNA mismatch repair protein MutS [Haloferax alexandrinus JCM 10717]
Length = 924
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 173/591 (29%), Positives = 296/591 (50%), Gaps = 60/591 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E +H ++ SLF + T T G RLLR L +P +D +
Sbjct: 258 LELDATTQRNLELTETMHG------DRSGSLFDTIDHTVTSPGGRLLREWLTRPRRDRDE 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D ++ L S +E R + + +++ S+ +
Sbjct: 312 LARRHDAVESLASA------------ALARERVREVLDGAYDLERLASR------SASGS 353
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQ--SFLLANIYRSVCENEKYASIRKRIGEVIDED 178
S ++ ++ L LP LA ++ ++ LA + S + + A +R + + + ED
Sbjct: 354 AGASELLSVRDTLSVLPALADAIEGSELADSPLAEVV-SRPDRDAAADLRTDLDDALAED 412
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARR-----SFCDTSEAVHNLANKYREELKLPN 233
P TQ G D L D+ R S+ DT LA++ + + L +
Sbjct: 413 ------PPKTVTQGGLFRTGYDDELDDLIERHESAKSWLDT------LADREKRDHGLSH 460
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAG 290
+ + N G+Y+ + K + ++P + Q+ N+ T EL +R + A G
Sbjct: 461 VTVDRNKTDGYYIQV-GKSVADQVPDHYRQIKTLKNSKRFVTEELEEKEREILRLEEARG 519
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
+ E L + + +L + + +D + + H +TRP TE
Sbjct: 520 DLEYE---LFEDLRERVARHAELLQDVGRTIAEVDALASLATHAAGNG----WTRPELTE 572
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
G L I+ GRHP++E+ DF+PN++ + + +IVTGPNMSGKSTY++Q LI +LAQ
Sbjct: 573 AGVLDIEAGRHPVVETT-TDFVPNDLRMDDERGFLIVTGPNMSGKSTYMRQAALITLLAQ 631
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G +VPA +T+ VVD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE+
Sbjct: 632 VGSFVPARSATVGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDEV 691
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA V +H R+
Sbjct: 692 GRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTSLADHLDRVANVHVAADERDGD 751
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ F + DGP YG+ +A++AG+P V++ A + R+ +E K +E
Sbjct: 752 VTFLRTVVDGPTD-RSYGIHVADLAGVPRPVVDRAGDVLDRL--REEKAIE 799
>gi|325103878|ref|YP_004273532.1| DNA mismatch repair protein MutS [Pedobacter saltans DSM 12145]
gi|324972726|gb|ADY51710.1| DNA mismatch repair protein MutS [Pedobacter saltans DSM 12145]
Length = 870
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 199/643 (30%), Positives = 324/643 (50%), Gaps = 86/643 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKK-RSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M +D +VRNLE++ G+SN+ ++L +L T + G R+LR +L PLK+ +
Sbjct: 266 MWLDRFTVRNLELV--------GSSNEDAKTLIDVLDHTSSAMGARMLRKWVLMPLKNRK 317
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I RLD + + +L L Q +R+ + +R++ + N ++
Sbjct: 318 PIEERLDVVSFFFKHNELRETLEQHIRQI-GDLERLVSKIGLQKA----------NPRE- 365
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRK---------R 170
I+ LK AL A+ + K+ CEN S+++
Sbjct: 366 ------IVQLKRALRAIEEIKKL----------------CENVDQESVKRIAEQINPCAS 403
Query: 171 IGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELK 230
I E ID++ L A P + A G + LD R+ + + L K E
Sbjct: 404 ISEKIDKE-LQADPPVAVAKGKVIA--DGFNEELDKLRKISYGGKDYLLELQRKEAEATG 460
Query: 231 LPNLKLPFNNRQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSA 288
+ +LK+ FNN G+YL + HKD K+P+ +I+ N T EL + A
Sbjct: 461 ISSLKIAFNNVFGYYLEVSNTHKD---KVPTEWIRKQTLVNAERYITPELKEYEDQILGA 517
Query: 289 AGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
+ + L+ ++ E + + L A ++ LD+++ FA TI+ K + Y RP
Sbjct: 518 EEKIHALETKLFSDLLASVAEFIRPIQLNATLIAQLDVLL-CFA-TIAQK--NYYVRPVV 573
Query: 349 TENGPLAIDGGRHPILES---IHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCL 404
+++ L I GGRHP++E I ++I N++++ E ++I+TGPNM+GKS L+Q L
Sbjct: 574 SDDKVLDIKGGRHPVIEKNLPIGEEYITNSVYLDDETQQIIIITGPNMAGKSALLRQTGL 633
Query: 405 IVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSL 464
IV++AQ+GC+VPA + + +VD+IFTR+G DNL S STFM EM ETA ++ N+S+RSL
Sbjct: 634 IVLMAQMGCFVPAKEAHVGIVDKIFTRVGASDNLSSGESTFMVEMNETASILNNLSDRSL 693
Query: 465 IVMDELGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHF 521
I++DE+GR TS+ DG +IAW+ E L + A T+FA+H L+EL+ + +K +
Sbjct: 694 ILLDEIGRGTSTYDGISIAWAIVEFLHNHPNANAKTLFATHYHELNELSNSFSRIKNFNV 753
Query: 522 YVVIRNNRLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI----TKKEV 576
V N++ F +L G H +G+ +A++AG+P V+ A I R+ T E
Sbjct: 754 TVKEVGNKVIFLRKLVPGGSEH--SFGIHVAKMAGMPPRVLLRANEILRRLENERTGGEH 811
Query: 577 KRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNL 619
+ I +Q + +Q+ A + I +K IR L NL
Sbjct: 812 VKASIMKMQKQAVQLQMFALEDPILIK--------IRDVLNNL 846
>gi|448545057|ref|ZP_21625800.1| DNA mismatch repair protein MutS [Haloferax sp. ATCC BAA-646]
gi|448547362|ref|ZP_21626840.1| DNA mismatch repair protein MutS [Haloferax sp. ATCC BAA-645]
gi|448556280|ref|ZP_21631966.1| DNA mismatch repair protein MutS [Haloferax sp. ATCC BAA-644]
gi|445704575|gb|ELZ56487.1| DNA mismatch repair protein MutS [Haloferax sp. ATCC BAA-646]
gi|445716373|gb|ELZ68117.1| DNA mismatch repair protein MutS [Haloferax sp. ATCC BAA-645]
gi|445716764|gb|ELZ68498.1| DNA mismatch repair protein MutS [Haloferax sp. ATCC BAA-644]
Length = 923
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 174/584 (29%), Positives = 289/584 (49%), Gaps = 63/584 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ E SA G++ LF +L G R L A L +PL D E
Sbjct: 286 LQLDATAIRSLELFES-RSARAGST-----LFSVLDEAACALGRRRLEAWLRRPLVDRER 339
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++ L + L L + +++ ++V + +
Sbjct: 340 IEARLDAVEALCDDALARADLRDQLSS------------VYDLERLVARV------SRER 381
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P + L S LLA++ S+ E E +R +G+ + D
Sbjct: 382 ADARDLRSLKTTLDRVPEIRDSLAGTDSDLLADLRDSLDELED---VRDLVGDAVVSDPP 438
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G D LD R + E V NL + +E + +L++ +N
Sbjct: 439 Q-------EITEGGVIADGFDAELDDVRGTAEAGREWVSNLEAREQERTGIDSLEVGYNQ 491
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLELASLNVRNKSAAGE------- 291
G+Y+ + + ++ ++P + Q +K+ + L+ + S +
Sbjct: 492 VHGYYIEVTNPNLD-RVPDDYQRRQTLKNSERFYTPELKEREDEILRASDCADALEYDLF 550
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTI--STKPVDRYT 344
C +R ++ E A+ DA+ D+ VL LA+V D F S P D
Sbjct: 551 CEVRADVATESARIQAVADAL-ADLDVLRTLADVAVANDYARPEFHRNAASSAGPTD--- 606
Query: 345 RPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCL 404
E+ + ID GRHP++E ++F+PN + ++ +VTGPNMSGKSTY++QV L
Sbjct: 607 -----EDAGIRIDAGRHPVVERAQDEFVPNPADLPR-GSVALVTGPNMSGKSTYMRQVAL 660
Query: 405 IVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSL 464
+ +LAQ+G +VPA + + V+DR+FTR+G D++ STFM EM E ++ N + SL
Sbjct: 661 VCVLAQVGGFVPAKSARLPVLDRVFTRIGASDDIAGGQSTFMREMSELTEILHNATGDSL 720
Query: 465 IVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYV 523
+++DE+GR TS++DG AIA + E L + A T+FA+H +L++ A V LHF
Sbjct: 721 VLLDEVGRGTSTADGLAIARAATEFLHDEVGATTLFATHYHDLTDAADDREGVFNLHFTA 780
Query: 524 VIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
R+ + F + DGP YG+ +A++AG+P++V+E AR++
Sbjct: 781 ARRDGEVTFLHSVADGPSS-SSYGVEVAQLAGVPASVVERARNL 823
>gi|443311537|ref|ZP_21041164.1| DNA mismatch repair protein MutS [Synechocystis sp. PCC 7509]
gi|442778416|gb|ELR88682.1| DNA mismatch repair protein MutS [Synechocystis sp. PCC 7509]
Length = 867
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 184/592 (31%), Positives = 297/592 (50%), Gaps = 69/592 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D+ S RNLEI + + + SL + T T G R LR LQPL DI+ I
Sbjct: 309 VDSQSRRNLEITQTVRDGIL-----HGSLLWAIDKTSTAMGGRALRRWFLQPLLDIKGIK 363
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+R D + EL+ + L L Q LR+ + +++T + + ++ L
Sbjct: 364 SRQDTIQELVEDTSLRHDLRQLLRQI------------YDLERLTGRA--SSGSANARDL 409
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+S L +L LP +A+++++AQS L + +K I +++G I ++ +
Sbjct: 410 VS----LADSLLRLPEIARLVENAQSPYLKAL-------QKVPPILEQLGHQIRNHLVES 458
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + T+ I+ GI+ LD R + + NL K + +PNLK+ FN
Sbjct: 459 --PPLYLTEGGL-IRSGINSQLDELRITVEQDKLWIANLEVKEKARTGIPNLKVGFNKTF 515
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE---------CY 293
G+Y+SI + ++P +I+ N T +L R +A +
Sbjct: 516 GYYISI-SRSRADQVPDNYIRKQTLTNEERYITPDLKEKEARILTAKDDLNRLEYEVFSL 574
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+R E+ A + IR + S A+VLC FA + Y RP E
Sbjct: 575 LRQEVGESA--EIIR-NTSRAVAAADVLC-------GFAEVAVYQ---GYCRPQMVEGRE 621
Query: 354 LAIDGGRHPILES--IHNDFIPNNIFIS---------EAANMVIVTGPNMSGKSTYLQQV 402
+ I GRHP++E F+PN+ + E ++VI+TGPN SGKS YL+Q+
Sbjct: 622 IIIIDGRHPVVEQSLPSGFFVPNSTMLGWEENSPDTLEKPDLVILTGPNASGKSCYLRQL 681
Query: 403 CLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSER 462
LI ++AQ+GC+VPA + + + DRIFTR+G VD+L + STFM EM ETA ++ + + +
Sbjct: 682 GLIQLMAQVGCFVPAKEAILGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATSK 741
Query: 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHF 521
SL+++DE+GR T++ DG +IAW+ E+L +K+ TIFA+H ++ELA++ PNV
Sbjct: 742 SLVLLDEIGRGTATFDGLSIAWAVAEYLAQEIKSRTIFATHYHEMNELASMMPNVANYQV 801
Query: 522 YVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
V +++ F Q++ G YG+ +AGLPS VI A+ + +I K
Sbjct: 802 TVKELPDQIIFLHQVQPGGAD-KSYGIEAGRLAGLPSVVIGRAKEVMGQIEK 852
>gi|337737054|ref|YP_004636501.1| DNA mismatch repair protein MutS [Clostridium acetobutylicum DSM
1731]
gi|384458562|ref|YP_005670982.1| DNA mismatch repair protein [Clostridium acetobutylicum EA 2018]
gi|325509251|gb|ADZ20887.1| DNA mismatch repair protein [Clostridium acetobutylicum EA 2018]
gi|336293249|gb|AEI34383.1| DNA mismatch repair protein MutS [Clostridium acetobutylicum DSM
1731]
Length = 869
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 180/587 (30%), Positives = 312/587 (53%), Gaps = 46/587 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
++ID S RNLE+ E L +KK SL +L T T G R +R + +PL D E
Sbjct: 260 LSIDINSRRNLELTETLKD-----KSKKGSLLWVLDKTSTAMGGRQIRKWIERPLIDDEK 314
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++E+++N L + L++ + +R+ K++SK + NAK+
Sbjct: 315 INLRLDAVEEMLTNVSYNEDLKELLKQVY-DIERL-------AGKISSKSV---NAKE-- 361
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I L+ +++ LP + K++K+ S LL N+ ++ + I K + E I+++
Sbjct: 362 -----MISLRGSIEKLPAIKKLIKNFNSELLVNMENAL---DDLGDIYKLLYESINDN-- 411
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P ++ ++ IK G + +D R + + + +L N RE + +LK+ +N
Sbjct: 412 ----PSLS-IKEGNIIKEGYNKDIDELRLAKSHGKQWIASLENTEREVTGIKSLKVSYNK 466
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ I ++ +I+ N+ T EL + + A + +
Sbjct: 467 VFGYYIEITKSNLNLVPEGRYIRKQTLTNSERYITPELKEMEEKILGAEEKLVLLEYNVF 526
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ + I +++ + A++L LD I SFA + Y +P +G L I GR
Sbjct: 527 CEIRERIEKEIDRIKGSAKILSELDCIC-SFADVARE---NNYCKPVIKRDGTLVIKEGR 582
Query: 361 HPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E + +F+ N+ I+ + N M+++TGPNM+GKSTY++QV LIV++AQIGC+VPA
Sbjct: 583 HPVVEKVIASGNFVANDTVINNSDNVMMLITGPNMAGKSTYMRQVGLIVLMAQIGCFVPA 642
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I + D+IFTR+G D+L + STFM EM E + +++N ++ SLI++DE+GR TS+
Sbjct: 643 SAAEISICDKIFTRIGASDDLNAGKSTFMVEMWEVSNILKNATKNSLILLDEVGRGTSTY 702
Query: 478 DGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG +IAWS E++ +LK T+FA+H L++L +K ++ + ++ D F
Sbjct: 703 DGLSIAWSVIEYICKSENLKCKTLFATHYHELTKLEGEIEGLK--NYSIAVKKVNDDIIF 760
Query: 535 QLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
K + YG+ +A++AGLP V+ AR I + + + K E
Sbjct: 761 LRKIISKGADESYGIEVAKIAGLPEEVLVRAREILKDLEEAKPKTAE 807
>gi|83647899|ref|YP_436334.1| DNA mismatch repair protein MutS [Hahella chejuensis KCTC 2396]
gi|83635942|gb|ABC31909.1| DNA mismatch repair protein MutS [Hahella chejuensis KCTC 2396]
Length = 882
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 170/580 (29%), Positives = 297/580 (51%), Gaps = 51/580 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLEI L + + +L ++ + T G+R+LR L +PL+ E +
Sbjct: 293 LDAASRRNLEIDVNL------AGDYRHTLAWVMDKSATAMGSRMLRRWLNRPLRSQEEVR 346
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + EL+ + Q F L + L++ +++R+L + +++ D+ + + TL
Sbjct: 347 QRQNAIKELLEDYQ-FEALHETLKQI-GDSERILSRVALR----SARPRDLARLRDTLTL 400
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
LP L K +++ L + + V E + I + I+E+
Sbjct: 401 -------------LPDLQKQMEELNDTHLRRLAKQVSE---FPDIADLLSRAIEENP--- 441
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R ++ G D LD R + + + + + +E +L +LK+ +N
Sbjct: 442 --PVVIRDGGV--LRQGFDEELDELRSISENAGDYLLEIEKREKERTQLSSLKVGYNRVH 497
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ + + + P+ +I+ N T EL + + SA R ++ +
Sbjct: 498 GYFIEL-SRTQSDQAPADYIRRQTLKNAERFITPELKTFEDKALSAKSRALSREKMLYDQ 556
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
+++ I E ++ L A L LD++ N ++ V P T+ L I+GGRHP
Sbjct: 557 ILETIVEQLAPLQDSARALSELDVLSNFAERALTLNLVC----PDLTDEHMLHIEGGRHP 612
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + D F+PN++ + + M+I+TGPNM GKSTY++Q IVILA G +VPA
Sbjct: 613 VVEQVSQDPFVPNDLNLQDKHRMLIITGPNMGGKSTYMRQTACIVILAYCGSFVPAAKVV 672
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +DR+FTRMG+ D++ STFM EM ETA ++ + +SL++MDE+GR TS+ DG +
Sbjct: 673 IGPIDRVFTRMGSSDDIAGGRSTFMVEMTETANILHYATRQSLVLMDEVGRGTSTFDGLS 732
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+C EHL ++A+T+FA+H L+ L + NV +H N+ + F + +GP
Sbjct: 733 LAWACAEHLAREIQAFTLFATHYFELTALPKTHANVANVHLTATEHNDSIVFLHTVHEGP 792
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
YG+ +A++AG+P VI A +K++K++E
Sbjct: 793 AS-KSYGIQVAQLAGVPPQVINQA--------QKQLKQLE 823
>gi|429330758|ref|ZP_19211540.1| DNA mismatch repair protein MutS [Pseudomonas putida CSV86]
gi|428764538|gb|EKX86671.1| DNA mismatch repair protein MutS [Pseudomonas putida CSV86]
Length = 858
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 171/570 (30%), Positives = 286/570 (50%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T G+RLL L +PL+D++ +
Sbjct: 266 LDGASRRNLELDVNL------AGGRDNTLQSVIDRCQTAMGSRLLTRWLNRPLRDLKVLQ 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ N + F L L+ + +R+L + NA+
Sbjct: 320 ARQGSIRCLLDNYR-FERLQPQLKDI-GDIERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + A + +++D+ ++
Sbjct: 363 --DLARLRDALGALPELQNAMAELEAPHLARL-------AAIAGTYPELADLLDKAIID- 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 413 NPPAVIRDGGV--LKAGYDAELDELLSISENAGQFLIDLEAREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P+ +I+ T EL + + SA R ++ +A
Sbjct: 471 GYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKTFEDKALSAKSRALAREKMLYDA 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ P F + + I GRHP
Sbjct: 530 LLETLISHLAPLQDTAAALSELDVLSNMAERALTLD----LNCPTFVDEPCMQISQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + + F+ N++ + ++ M+I+TGPNM GKSTY++Q LIV+LA IG YVPA T
Sbjct: 586 VVEQVLTSPFVANDLALDDSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSYVPAASCT 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P+ VI+ AR R+
Sbjct: 766 SQ-SYGLAVAQLAGVPTPVIQRAREHLGRL 794
>gi|363897251|ref|ZP_09323790.1| DNA mismatch repair protein MutS [Oribacterium sp. ACB7]
gi|361958748|gb|EHL12045.1| DNA mismatch repair protein MutS [Oribacterium sp. ACB7]
Length = 902
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 181/591 (30%), Positives = 296/591 (50%), Gaps = 80/591 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ S RNLE+ E L K+ +L +L TKT G+R+LR L +PL+D +
Sbjct: 268 MIVDSYSQRNLELWETLRE-----KKKRGTLLWVLDYTKTAMGSRMLRHFLERPLRDKKK 322
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++E + L ++L + +R+L L NA+
Sbjct: 323 IEARLDAVEEFTGHYIDMEELREYLDSI-YDIERLLARIS----------LSTANAR--- 368
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--ED 178
++ LK +L LP + K L QS LL+ ++GE +D ED
Sbjct: 369 ----DLLALKLSLQYLPDIKKALSPFQSSLLS-----------------KMGEEMDSLED 407
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIA--------RRSFCDTSEAVHNLANKYREELK 230
+ + ++ + ++K G GL+ + R + + E + L + R++
Sbjct: 408 I-YRKIEEEIVEEPPLSVKEG--GLIKASFSKDVEDYRNAGVNGKEWLQELEARERDKTG 464
Query: 231 LPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLEL-------ASL 281
+ NLK+ +N G+ + K QG++P FI Q + G + LE A
Sbjct: 465 IKNLKIKYNRIFGYCFEV-SKAYQGEIPDYFIRRQTLAQGERYITTELEELQNRILGAEE 523
Query: 282 NVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD 341
+++ A C +R EI E + I++ L L L L + + +
Sbjct: 524 KLKDLEYALFCTLREEIAEE--LPRIQKTARELAHLDAYLSLAKLAIK-----------E 570
Query: 342 RYTRPHFTENGPLAIDGGRHPILESIHND--FIPNNIFISEAANMVIVTGPNMSGKSTYL 399
Y RP +E G L I GRHP++E + + FIPN+ + E + I+TGPNM+GKSTY+
Sbjct: 571 NYVRPRLSEGGSLFIKEGRHPVVEKLLEEEHFIPNDTSLEENQEIAIITGPNMAGKSTYM 630
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+QV LIV+L+ IG +VPA + + + DRIFTR+G D+L STFM EM E A +++N
Sbjct: 631 RQVALIVLLSAIGSFVPAKEAELPICDRIFTRVGASDDLAQGQSTFMVEMSEVANILRNA 690
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKI 518
+++SL+++DE+GR TS+ DG +IAW+ E++ ++A T+FA+H L+EL NVK
Sbjct: 691 TKQSLLILDEIGRGTSTFDGLSIAWAVVEYIARHIQAKTLFATHYHELTELEGKLNNVKN 750
Query: 519 LHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
V ++ + F ++ G YG+ +A++AG+P V+ AR I++
Sbjct: 751 YCIAVSKKDGEISFLRKIIPGGAD-ESYGIDVAKLAGVPEGVLSRAREISA 800
>gi|336426864|ref|ZP_08606872.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010504|gb|EGN40487.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 882
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 182/594 (30%), Positives = 297/594 (50%), Gaps = 69/594 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+++ RNLE+ E L K+ SL +L TKT G R+LR+ L QPL
Sbjct: 267 MLLDSSTRRNLELTETLRE-----KQKRGSLLWVLDKTKTAMGARMLRSFLEQPLIHKTE 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD ++ +N L ++L + +R+L +K T+ D
Sbjct: 322 MEERLDAVEAFCNNPLARDELREYLNPI-YDLERLLGKVSYK----TANPRD-------- 368
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I + +++ LP + VLK+ I + E ++ IGE I+E+
Sbjct: 369 -----LIAFRNSMEMLPHIKTVLKELPGEANQKIEEEIDGLEDLFAL---IGESIEEEP- 419
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P R + I+ G + +D RR+ + + +L N RE + NL++ +N
Sbjct: 420 ----PITIR--EGGMIREGYNEDIDTLRRAKTEGKNWLADLENTERERTGIKNLRVKYNK 473
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCST-----LELASLNVRNKSAAGE---- 291
G+YL + K +P +++ N +T LE LN +K E
Sbjct: 474 VFGYYLEVT-KSYLNMVPEDYVRKQTLTNAERYTTPRLKELEDTILNAEDKLCTLEYDLF 532
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
C IR +I E ++ I+ + L +V C ++ ++YTRP E
Sbjct: 533 CEIRDQIAGE--IERIQTTAKAVARL-DVFCSFSLVAEQ----------NQYTRPKLNEK 579
Query: 352 GPLAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVIL 408
G + I GRHP++E + H+ FIPN+ + + ++TGPNM+GKSTY++Q LIV++
Sbjct: 580 GLIHIKDGRHPVVEKMIEHDMFIPNDTHLDNNTRQIAVITGPNMAGKSTYMRQTALIVLM 639
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQIG +VPA + I +VDRIFTR+G D+L S STFM EM E A +++N + SL+++D
Sbjct: 640 AQIGSFVPARQADIGIVDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATRNSLLILD 699
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
E+GR TS+ DG +IAW+ EH+ + L A T+FA+H L+EL NV ++ + +
Sbjct: 700 EIGRGTSTFDGLSIAWAVIEHISNRKLLGAKTLFATHYHELTELEGKMSNVN--NYCIAV 757
Query: 526 RNNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ D F +K G YG+ +A +AG+P VI+ A+ I +++ ++
Sbjct: 758 KEKGDDIVFLRKIIKGGADK--SYGIQVARLAGVPDLVIDRAKEIVEQLSDNDI 809
>gi|254448222|ref|ZP_05061684.1| DNA mismatch repair protein MutS [gamma proteobacterium HTCC5015]
gi|198262089|gb|EDY86372.1| DNA mismatch repair protein MutS [gamma proteobacterium HTCC5015]
Length = 886
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 174/575 (30%), Positives = 282/575 (49%), Gaps = 58/575 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLEI L + + +L +L TT++ G+R L+ L +PL+ E +
Sbjct: 287 LDAASRRNLEIDRNL------SGGEDNTLLSVLDTTRSAMGSRNLQRWLRRPLRQREVLR 340
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R ++ L +++ N L GL Q + +R+ K +
Sbjct: 341 QRHGAVEALQDVLINASLADGLKQI-----GDIERICSRLSLKSARP------------- 382
Query: 120 QTLISSIILLKTALDALPLLAKVL-----KDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
+I L+ L ALP L + L + A LL I++++ E + +R V
Sbjct: 383 ----RDLIQLRQTLSALPELRQPLASLNLESADIALLQRIHQTLAPQETLQDLLERA--V 436
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
ID P + R I+ G D LD R + + + +L + RE + L
Sbjct: 437 IDNP------PVLIR--DGGVIREGYDAELDELRGLSQNADQFLTDLEQRERERTGISTL 488
Query: 235 KLPFNNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC 292
K+ +N G+Y+ + H D +P+ +++ T EL + SA
Sbjct: 489 KVAYNRVHGYYIEVGRTHSD---NIPTEYVRRQTLKAVERYITPELKGFEDKVLSARERA 545
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
R + + L+D + ++ + LA L LD + N A + Y RP ++
Sbjct: 546 LAREKALYDELLDQLLNELPTIQTLARALADLDTL-NCLAERATAL---NYCRPEMVDSP 601
Query: 353 PLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
+ I+ GRHP++E++ +D F PN+ + + M+++TGPNM GKSTY++Q LIV+LA +
Sbjct: 602 GVNIEQGRHPVVETLVDDPFTPNDAVLGDDQRMLMITGPNMGGKSTYMRQTALIVLLAHV 661
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + +D+IFTR+G D+L STFM EM E A ++ N S+ SL++MDE+G
Sbjct: 662 GSFVPASACRLGPIDQIFTRIGASDDLAGGRSTFMVEMTEAANILHNASDNSLVLMDEIG 721
Query: 472 RATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS+ DG ++AW+C EHL +A T+FA+H L+ L + +H V ++ L
Sbjct: 722 RGTSTYDGLSLAWACAEHLAEKTRALTLFATHYFELTSLPDSIDGIANVHLDAVEHDSGL 781
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
F +KDGP + YGL +A +AG+P V+ AR
Sbjct: 782 VFMHSVKDGPANQ-SYGLQVARLAGVPPAVVANAR 815
>gi|325263900|ref|ZP_08130633.1| DNA mismatch repair protein MutS [Clostridium sp. D5]
gi|324030938|gb|EGB92220.1| DNA mismatch repair protein MutS [Clostridium sp. D5]
Length = 883
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 182/594 (30%), Positives = 298/594 (50%), Gaps = 69/594 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+++ RNLE+ E L K+ SL +L TKT G R LR + QPL + E
Sbjct: 267 MMLDSSTRRNLELCETLRE-----KQKRGSLLWVLDKTKTAMGARTLRKYVEQPLIEKEE 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAK 117
I RLD ++EL N + ++L + +R++ + P+ +T+
Sbjct: 322 ILRRLDAVEELKGNAISREEIREYLTPV-YDLERLITRITYGSANPRDLTA--------- 371
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L ++L+ LP + +L++ QS LL + + E ++ K VID+
Sbjct: 372 -----------LCSSLEMLPHVKYILEEMQSPLLCGVRDDLDTLEDLCTLIK--DAVIDD 418
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
P +A ++ I+ G +D R + D + + L + RE+ + NLK+
Sbjct: 419 -------PPLA-MKEGGIIRDGYSEEVDTLRHAKSDGKQWLAKLEEEEREKSGIKNLKIK 470
Query: 238 FNNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+N G+YL + +KD+ +P + + N T EL L A + Y
Sbjct: 471 YNKVFGYYLEVTNSYKDL---VPDYYTRKQTLANAERYITPELKELEDTILGAEDKLYAL 527
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ D I +V + A+ + LD+ FA + Y RP E G +
Sbjct: 528 EYELYSTVRDTIAGEVERIQKTAKAIAALDV----FASIALVAERNNYVRPKINEKGIID 583
Query: 356 IDGGRHPILESIHNDFIPNNIFIS-------EAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
I GRHP++E + IPN++FIS + + I+TGPNM+GKSTY++Q LIV++
Sbjct: 584 IKDGRHPVVEKM----IPNDMFISNDTYLDDKKQRISIITGPNMAGKSTYMRQAALIVLM 639
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ+G YVPA + I +VDRIFTR+G D+L S STFM EM E A +++N + +SL+++D
Sbjct: 640 AQLGSYVPASNANIGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILD 699
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
E+GR TS+ DG +IAW+ E++ L A T+FA+H L+EL NV ++ + +
Sbjct: 700 EIGRGTSTFDGLSIAWAVVEYISDTHLLGAKTLFATHYHELTELEGKIENVN--NYCIAV 757
Query: 526 RNNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ D F +K G YG+ +A++AG+P VI+ A+ I ++ +++
Sbjct: 758 KEKGDDIVFLRKIVKGGADK--SYGIQVAKLAGVPDIVIDRAKEIVEELSDEDI 809
>gi|375134156|ref|YP_004994806.1| DNA mismatch repair protein [Acinetobacter calcoaceticus PHEA-2]
gi|325121601|gb|ADY81124.1| DNA mismatch repair protein [Acinetobacter calcoaceticus PHEA-2]
Length = 879
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 176/586 (30%), Positives = 302/586 (51%), Gaps = 53/586 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQ----FLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
RLD + EQL G + + K + +RVL +++ D+ +
Sbjct: 330 ARLDAI------EQLIQGYHENPVRLVLKEIGDIERVLSRVALG----SARPRDLVQLRH 379
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+ + I L+TAL V++ +S LL + + + + ++ + + I E+
Sbjct: 380 A---CAQIPALRTAL------TPVIQAKKSKLLLQLDEELGD---FKALHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGINTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALSREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQA 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E+++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALNKAPFTPNDTFLDAQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 KAVKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L +K +FA+H L+EL + I +++V + N L
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS---EAGIDNYHVTAQELNGNLILLH 772
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+++ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 773 KVQQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>gi|429212310|ref|ZP_19203475.1| DNA mismatch repair protein MutS [Pseudomonas sp. M1]
gi|428156792|gb|EKX03340.1| DNA mismatch repair protein MutS [Pseudomonas sp. M1]
Length = 859
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 174/570 (30%), Positives = 282/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + + +L ++ +T G+RLL L +PL+D +
Sbjct: 270 LDGASRRNLELDTNL------SGGRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDRAVLE 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 324 ARQESIACLLERYR-FENLQPQLKEI-GDVERILARIGLR------------NARPR--- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + + ++ L + S+ + A + R +ID
Sbjct: 367 --DLARLRDALAALPELQRGMTELEAPHLGELAASIRTYPELADLLARA--IIDNP---- 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + +E L LK+ +N
Sbjct: 419 --PAVIRDGGV--IKRGYDAELDELQTLSENAGQYLMDLEIREKERTGLSGLKVGYNRIH 474
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ +P + + P+ + + T EL + + SA R + E
Sbjct: 475 GYYIELPRMQAE-QAPADYQRRQTLKGAERFITPELKAFEDKALSAQSRALAREKQLYEE 533
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
LV+ + ++ L A L LD++ N ++ RP F E + I+ GRHP
Sbjct: 534 LVELLIAQLAPLQDTAAALAELDVLANLAERALNLD----LNRPRFVEESGILIEQGRHP 589
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + E M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 590 VVEQVLDTPFVANDLKLDEDTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 649
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 650 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 709
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AWS EHL L+A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 710 LAWSAAEHLAHLRAFTLFATHYFELTVLPESEPVVANVHLNATEHNERIVFLHHVLPGPA 769
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI AR +R+
Sbjct: 770 SQ-SYGLAVAQLAGVPGPVILRAREHLARL 798
>gi|30580411|sp|O94065.1|MSH4_CANAL RecName: Full=MutS protein homolog 4
gi|3859680|emb|CAA22017.1| DNA mismatch repair protein [Candida albicans]
Length = 803
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 188/632 (29%), Positives = 324/632 (51%), Gaps = 36/632 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +VR+LE+++ L GT+ L+ L T G R+LR ++LQP +
Sbjct: 192 MLIDTCTVRDLELVDSLSET--GTT-----LYSFLNCCLTKMGMRILRTSILQPSTHENS 244
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + L EL+++E + L K + ++V F +P+ + S+ +++N
Sbjct: 245 IILRSESLQELINDEDALISIRSSL-KHTCDLEKVFSTF-LEPRGLLSQEQEINN----- 297
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
IILLKT L ++ K +++ S LL + + + E+E + I E I D
Sbjct: 298 -----IILLKTVLQNTFVIRKSIQNVSSHLLVQV-KQILEHENVQHLLAIINEYIRNDCQ 351
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A Q+ A+K G++GLLD++RR E V L K EEL++ ++ F
Sbjct: 352 WANNSTELANQRANAVKSGVNGLLDVSRRIRETLLEEVSELVAKLSEELEIF-MEYRFEI 410
Query: 241 RQGFYLSIPHKDIQ-GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+GF++ I + LP I VK I C+T+EL + R E
Sbjct: 411 SRGFFIKIKGNNTDINSLPEVLINRVKKRKTIECTTIELMKQSSRYNDIVSEITTLNSTI 470
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ + +I +L +++E + LD++ SFA+ S + D YT P F + + I
Sbjct: 471 IHDMYTSINSYTPILLMVSEAIGTLDLLC-SFAYFTSLQK-DSYTCPEFAK--EVTIMRS 526
Query: 360 RHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPIL +++F+ NN + E + + ++TG NMSGKS YL+Q+ +VI+AQ+GC+VPA
Sbjct: 527 LHPILGGNNSNFVANNYSCNHELSRIHVITGANMSGKSVYLRQIAYLVIMAQMGCFVPAE 586
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
++ +R+ + +++R+ + DN++ N+S+F EM ETA ++ + SLI++DELGR +S +D
Sbjct: 587 YARMRIFNSLYSRISS-DNVDINASSFSKEMSETAVILNDSDGDSLILIDELGRGSSLTD 645
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
GF+I + E L+ +A I +H +++++ V H V N +L+ K+ L
Sbjct: 646 GFSICLAILEDLICKEATVITTTHFRDIAQVLANKSCVVTAHMQTVETNGQLEMKYNLVL 705
Query: 539 GPRHVPHYGLLLAEVAG-LPSTVIETARSITSRI-TKKEV---KRMEINCLQYKQIQMLY 593
G + YG+ AEV+ LP +IE ++ + + + ++K V K +++ + K + LY
Sbjct: 706 GRNDIVGYGIRFAEVSNLLPQELIEDSKVVANILRSRKPVHGDKELKLLSRRRKLVLELY 765
Query: 594 HAAQRLICLKYSNQDEESIRHALQNLKESFID 625
A + L N D LQ L+ F++
Sbjct: 766 FALNYISKL---NCDMNYKMQLLQTLQSKFVE 794
>gi|330997284|ref|ZP_08321137.1| DNA mismatch repair protein MutS [Paraprevotella xylaniphila YIT
11841]
gi|329571079|gb|EGG52786.1| DNA mismatch repair protein MutS [Paraprevotella xylaniphila YIT
11841]
Length = 873
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 190/607 (31%), Positives = 302/607 (49%), Gaps = 58/607 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +VRNLE+ L+S + G + SL ++ T T G RL+R +L PLKD + +N
Sbjct: 268 LDKFTVRNLEL---LNSMVDGGN----SLLGVIDRTITPMGARLMRRWILFPLKDEKPVN 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +D FF +F KE H +++ SKV +
Sbjct: 321 ERLDVVD-------YFFREPEF-----KELVSDQLHLMGDLERIISKV------SVGRVS 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDEDVL 180
++ LK AL A+ + + A L I ++C ASIR RI I D
Sbjct: 363 PRDVVQLKVALQAIEPIKIACEHASDETLKRIGEQLNLC-----ASIRDRIAREIQNDP- 416
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + I G+D LD R + + + + + E +P+LK+ +NN
Sbjct: 417 ----PLL--VNKGGVIAEGVDRELDELRHIAFEGKDYLLKIQQRETELTGIPSLKISYNN 470
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + HKD K+P+ +I+ N T EL + A + +
Sbjct: 471 VFGYYLEVRNTHKD---KVPADWIRKQTLVNAERYITQELKEYEEKIMGAQDKILVLETK 527
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
LV A+ E + + A +L LD ++ SFA +RY RP ++ L I
Sbjct: 528 LYNELVLALAEFTPAIQINANLLARLDCLL-SFAQVAQD---NRYIRPVIQDDDVLDIKQ 583
Query: 359 GRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E + +I N++++ +E ++I+TGPNM+GKS L+Q LI ++AQIGC+
Sbjct: 584 GRHPVIEKELPVGEQYIANDVYLDTEKQQIIIITGPNMAGKSALLRQTALITLMAQIGCF 643
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +VD+IFTR+G DN+ STFM EM E A ++ N+S RSL++ DELGR T
Sbjct: 644 VPAESAHIGLVDKIFTRVGASDNISMGESTFMVEMNEAANILNNISSRSLVLFDELGRGT 703
Query: 475 SSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAW+ E++ KA T+FA+H L+E+ +Y VK + V + ++
Sbjct: 704 STYDGISIAWAIVEYIHENKKGKARTLFATHYHELNEMEKLYSRVKNYNVSVREVDQKVI 763
Query: 532 FKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQ 590
F +L + G H +G+ +A++AG+P +++ A +I + K + N KQ+
Sbjct: 764 FLRKLERGGSEH--SFGIHVAKLAGMPKSIVSRANTILKELESANSKDVMKNSRGAKQVM 821
Query: 591 MLYHAAQ 597
+ Q
Sbjct: 822 QADNGVQ 828
>gi|190411091|gb|ACE78300.1| truncated MutS [Vibrio parahaemolyticus]
Length = 848
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 295/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + +YA+ + E++ E +
Sbjct: 367 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQYAAPIDEVCELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L R+ + LK+ +NN
Sbjct: 413 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERDRHGIDTLKVGYNNVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 527 --WEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP +E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 AGRHPGVEQVTSDPFIANPIELSPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + + +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 641 AESAQVGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 797
>gi|323144149|ref|ZP_08078785.1| DNA mismatch repair protein MutS [Succinatimonas hippei YIT 12066]
gi|322416057|gb|EFY06755.1| DNA mismatch repair protein MutS [Succinatimonas hippei YIT 12066]
Length = 871
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 179/608 (29%), Positives = 316/608 (51%), Gaps = 53/608 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE++ L +G SL +L T T G+RLL+ +++P ++ + I
Sbjct: 268 LDKCAQRNLELLTNLRGESYG------SLLSILDKTHTAMGSRLLKRFIVEPSRNNQLIE 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL+ ++EL+++ + LS++L + + +R+ N+ + + L
Sbjct: 322 NRLNLVEELINSSEKD-NLSKYLSEI-GDLERITARIGL-------------NSARPRDL 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ AL L +KD+ +F+ +++ N+K + +I E++ +
Sbjct: 367 AK----LREAL----FLTPQIKDSLNFIEGESFKAF--NDKLNPL-PQIYELLYNAIAEE 415
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ ++ I G + LD R +++ + + ++ + + +LK+ FN
Sbjct: 416 PASLL---REGNVIADGYNTELDELRELMSGSAKGLKEIEDREKARTGISSLKVNFNQVH 472
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ IP K K+P +I+ NN T EL L + +A I + E
Sbjct: 473 GYYIDIP-KTHSAKVPEDYIRRQTLKNNERFITPELKELEEKTLNAQSRSLIIEKELYEN 531
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
++ +++++ LT LA L LD+I+ SFA + + YTRP + I GRHP
Sbjct: 532 ILQKLQQNLGDLTNLAASLSFLDVIL-SFAKEAES---NNYTRPTLVNESYIEIKEGRHP 587
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++ES+ + F+ NN+ + + + +++GPNM GKST+++Q LI I+A+IG +VPA +
Sbjct: 588 VVESLSDSPFMTNNLELGKDKRIAVISGPNMGGKSTFMRQNALIAIMARIGSFVPAKKAI 647
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +DRIFTR+G D+L S STFM EM+ETA ++ N + +SL++MDE+GR TS +G +
Sbjct: 648 IGDIDRIFTRIGASDDLASGRSTFMVEMEETATILNNATYQSLVLMDEVGRGTSGEEGSS 707
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
IA S E+L LK T+F++H +++LA +PN K L F +N ++ F + + G
Sbjct: 708 IAQSIVEYLCEKLKPLTLFSTHYTEITDLAEKFPNAKNLCFNAEEKNGQIYFLYHAETG- 766
Query: 541 RHVPHYGLLLAEVAGLPSTVIETA---RSITSRITKKEVKRME-------INCLQYKQIQ 590
+ +G+ +A++AGLP VI TA R TS +VK + + + K
Sbjct: 767 KQSKSFGIEVAKLAGLPYEVISTALNKREKTSNFNSNKVKNSQYFNKNETVTPVLSKNEN 826
Query: 591 MLYHAAQR 598
LY+A++R
Sbjct: 827 NLYNASKR 834
>gi|44888195|sp|Q83CQ2.1|MUTS_COXBU RecName: Full=DNA mismatch repair protein MutS
Length = 859
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 176/577 (30%), Positives = 287/577 (49%), Gaps = 64/577 (11%)
Query: 3 IDATSVRNLEII-----EPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKD 57
IDA + RNLE+I E +HS W +L T T G+RLLR + +PL+D
Sbjct: 274 IDANTRRNLELITNLQGEEVHSLAW-----------LLDHTATPMGSRLLRRWINRPLRD 322
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
+ R + + L+ + + + LR + +R++ + +
Sbjct: 323 QILLQQRQNAVSTLLEKRN-YSEIYENLRHI-GDLERIVARIALRSARP----------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ L+ AL LP L + L + + N++ I+ +G + DE
Sbjct: 370 ------RDLMQLRQALGVLPTLHQQLTN------------LPLNKQLQEIKNNLG-LFDE 410
Query: 178 ------DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL 231
+ P V R A G D LD R ++ + + +L + RE K+
Sbjct: 411 LFRLLKKAIIENPPIVIRDGGVIA--DGYDAPLDELRNMSTNSHQFLIDLEQQERERTKI 468
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
+K+ +N G+Y+ I + + P+ +I+ N T EL + S+
Sbjct: 469 NTVKVGYNRIHGYYIEISRAQAK-QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSR 527
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
R + E L+D + E + L A + LD ++N+ A T + P F +
Sbjct: 528 ALAREKELYEQLLDTLIEKLIPLQQCASAIANLD-VLNTLAERADTL---NFNAPQFCDY 583
Query: 352 GPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I+ GRHPI+E++ D F+PN+ + E M+I+TGPNM GKSTY++Q LI +LA
Sbjct: 584 PIIKIEAGRHPIVENVMTDPFMPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAY 643
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + + +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+
Sbjct: 644 IGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEV 703
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++A++C +L + LKA+ +FA+H L+ LA+ VK +H V +
Sbjct: 704 GRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLQAVKNVHLDAVEHEEK 763
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+ F L++GP + YGL +A++AG+P +VI+ AR
Sbjct: 764 IIFLHALREGPAN-KSYGLQVAQLAGIPRSVIQHARQ 799
>gi|110803440|ref|YP_698493.1| DNA mismatch repair protein MutS [Clostridium perfringens SM101]
gi|123047422|sp|Q0STR4.1|MUTS_CLOPS RecName: Full=DNA mismatch repair protein MutS
gi|110683941|gb|ABG87311.1| DNA mismatch repair protein MutS [Clostridium perfringens SM101]
Length = 910
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 175/575 (30%), Positives = 304/575 (52%), Gaps = 48/575 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL N + ++ + I + + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNL---DDLRDIYELLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G +G +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNGEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNM+GKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++ +G YG+ +A++AG+P VI A+ I
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDEVINRAKEI 795
>gi|161831167|ref|YP_001596673.1| DNA mismatch repair protein MutS [Coxiella burnetii RSA 331]
gi|189030765|sp|A9NCN3.1|MUTS_COXBR RecName: Full=DNA mismatch repair protein MutS
gi|161763034|gb|ABX78676.1| DNA mismatch repair protein MutS [Coxiella burnetii RSA 331]
Length = 859
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 176/577 (30%), Positives = 287/577 (49%), Gaps = 64/577 (11%)
Query: 3 IDATSVRNLEII-----EPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKD 57
IDA + RNLE+I E +HS W +L T T G+RLLR + +PL+D
Sbjct: 274 IDANTRRNLELITNLQGEEVHSLAW-----------LLDHTATPMGSRLLRRWINRPLRD 322
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
+ R + + L+ + + + LR + +R++ + +
Sbjct: 323 QILLQQRQNAVSTLLEKRN-YSEIYENLRHI-GDLERIVARIALRSARP----------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ L+ AL LP L + L + + N++ I+ +G + DE
Sbjct: 370 ------RDLMQLRQALGVLPTLHQQLTN------------LPLNKQLQEIKNNLG-LFDE 410
Query: 178 ------DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL 231
+ P V R A G D LD R ++ + + +L + RE K+
Sbjct: 411 LFRLLQKAIIENPPIVIRDGGVIA--DGYDAPLDELRNMSTNSHQFLIDLEQQERERTKI 468
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
+K+ +N G+Y+ I + + P+ +I+ N T EL + S+
Sbjct: 469 NTVKVGYNRIHGYYIEISRAQAK-QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSR 527
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
R + E L+D + E + L A + LD ++N+ A T + P F +
Sbjct: 528 ALAREKELYEQLLDTLIEKLIPLQQCASAIANLD-VLNTLAERADTL---NFNAPQFCDY 583
Query: 352 GPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I+ GRHPI+E++ D F+PN+ + E M+I+TGPNM GKSTY++Q LI +LA
Sbjct: 584 PIIKIEAGRHPIVENVMTDPFMPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAY 643
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + + +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+
Sbjct: 644 IGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEV 703
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++A++C +L + LKA+ +FA+H L+ LA+ VK +H V +
Sbjct: 704 GRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLQAVKNVHLDAVEHEEK 763
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+ F L++GP + YGL +A++AG+P +VI+ AR
Sbjct: 764 IIFLHALREGPAN-KSYGLQVAQLAGIPRSVIQHARQ 799
>gi|424047693|ref|ZP_17785251.1| DNA mismatch repair protein MutS [Vibrio cholerae HENC-03]
gi|408883657|gb|EKM22436.1| DNA mismatch repair protein MutS [Vibrio cholerae HENC-03]
Length = 853
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 181/580 (31%), Positives = 292/580 (50%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+R+L+ L QP++ ++T+N
Sbjct: 266 LDAATRRNLELTQNLSG---GTDN---TLAEVLDHCATPMGSRMLKRWLHQPMRCVDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF + ++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQSLFTDIQPIFKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V LA+ Y +K A + EV D E +
Sbjct: 367 ------LRHAMQQLPELEAVTSS-----LAHPYL-----KKLAQFAAPMDEVCDLLERAI 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + I G + LD R+ +E + L RE + LK+ +N
Sbjct: 411 KENPPVVIR--EGGVIAEGYNAELDEWRKLADGATEYLEKLETDERERHGIDTLKVGYNA 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 469 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAVEKKL- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + ++ + LA + LD++ N S Y RP + ++
Sbjct: 527 ----WEELFDLLMPNLEKMQNLASAISQLDVLQNLAERADSLD----YCRPTLDKEAGIS 578
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + ++ FI N I +S A M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 579 IQAGRHPVVEQVTSEPFIANPIELSSARKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 639 VPAESAHIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 698
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 699 STYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFM 758
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P VI+ AR S++ +
Sbjct: 759 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARHKLSQLEQ 797
>gi|229829057|ref|ZP_04455126.1| hypothetical protein GCWU000342_01142 [Shuttleworthia satelles DSM
14600]
gi|229792220|gb|EEP28334.1| hypothetical protein GCWU000342_01142 [Shuttleworthia satelles DSM
14600]
Length = 895
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 177/593 (29%), Positives = 306/593 (51%), Gaps = 51/593 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DA + RNLE++E L K+ SL +L T+T G R+LR+ + QPL D E
Sbjct: 280 MLLDAATRRNLELVETLRE-----KEKRGSLLWVLDKTRTAMGARMLRSRIEQPLIDEEE 334
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D LDE++S+ + ++L + +R++ ++ T+ D
Sbjct: 335 IINRYDALDEMLSDMISREEIREYLNPV-YDLERLITRITYQ----TANPRD-------- 381
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ +++ LP + +L D F N+ R + + + I+ I I E+
Sbjct: 382 -----LVAFASSVAVLPAIRALLAD---FSSRNMKRILDDMDPLEDIKTLISSAIAEE-- 431
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P ++ + + I+ G + +D R + D + + L + RE+ + NL++ +N
Sbjct: 432 ----PPIS-SHEGGIIRAGYNQEIDRLRAAATDGKQWLAELETREREKTGIKNLRIKYNR 486
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-NVRNKSAAGECYIRTEIC 299
G+YL + + + +P FI+ N T EL L N SA + E+
Sbjct: 487 VFGYYLEVTNSYLN-LVPDYFIRKQTLTNAERFYTPELKELENTILGSADRLLALENELF 545
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFTENGPLAIDG 358
+ + D + ++V + A + LD F +++ D R+ RP + G L I
Sbjct: 546 CQ-VRDRVGQEVVRIQKTARAIASLD-----FYQSLAKVAEDNRFCRPRLNKRGILEIKN 599
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + DFI N+ ++ ++ + I+TGPNM+GKSTY++Q +IV++AQ+G +V
Sbjct: 600 GRHPVVEKMLRDGDFIANDTYLDNKSHRLSIITGPNMAGKSTYMRQNAIIVLMAQVGSFV 659
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVDRIFTR+G D+L S STFM EM E A +++N + +SL+++DE+GR TS
Sbjct: 660 PAEAANISVVDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATSKSLLILDEIGRGTS 719
Query: 476 SSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAW+ E++ + + A T+FA+H L+EL V ++ V ++ +
Sbjct: 720 TFDGLSIAWAMVEYIANSRLIGAKTLFATHYHELTELEGRIDGVN--NYCVAVKEKGDEI 777
Query: 533 KFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCL 584
F K P YG+ +A++AG+P VIE A+ I+ ++ ++ + N L
Sbjct: 778 VFLRKIVPGGADRSYGIQVAKLAGVPDGVIERAKEISEELSDHDITLIAANIL 830
>gi|168207459|ref|ZP_02633464.1| DNA mismatch repair protein MutS [Clostridium perfringens E str.
JGS1987]
gi|170661161|gb|EDT13844.1| DNA mismatch repair protein MutS [Clostridium perfringens E str.
JGS1987]
Length = 909
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 175/575 (30%), Positives = 303/575 (52%), Gaps = 48/575 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL N Y ++ + I + + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLKNYYNNL---DDLRDIYELLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G + +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNM+GKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++ +G YG+ +A++AG+P VI A+ I
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDEVINRAKEI 795
>gi|319789352|ref|YP_004150985.1| DNA mismatch repair protein MutS [Thermovibrio ammonificans HB-1]
gi|317113854|gb|ADU96344.1| DNA mismatch repair protein MutS [Thermovibrio ammonificans HB-1]
Length = 860
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 189/574 (32%), Positives = 292/574 (50%), Gaps = 55/574 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID + RNLE+ EPL L + +LF L TKT G RLL+ +L PL+ + IN
Sbjct: 246 IDPYTQRNLELTEPLVENL-----SRDTLFSTLNRTKTGMGRRLLKFWILHPLRSVSEIN 300
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL + L LS+ L + +R+ VT + N K+ +L
Sbjct: 301 RRLDAVGELKESFLLADELSELLSGV-YDVERL----------VTKATAGIINPKEMASL 349
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLA-------NIYRSVCENEKYASIRKRIGEVI 175
+ +L ALP + K+L+ S LL+ ++Y CE E+ ++
Sbjct: 350 -------RASLKALPKIKKLLESFSSELLSQLASTFDDLYDIYCELERV---------LV 393
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
D L + + I+ G+ LD RR + + + + + R+ + +LK
Sbjct: 394 DSPPLSPK--------EGGLIRKGVHPELDELRRIKENAEQIIREIEERERKRTGIQSLK 445
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ FNN G+Y+ + ++ +PS +I+ N T EL + SA
Sbjct: 446 VGFNNVFGYYIEVSKPNLH-LVPSDYIRRQTLVNAERFITPELKEFEEKVLSAQERIEKI 504
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ L I + S + AE L +D+++ SFA YTRP + +
Sbjct: 505 EYELFKELRRFISDRASRIVETAEKLATIDVLL-SFAKVARD---FNYTRPEVGDFYEVE 560
Query: 356 IDGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP+LE S+ +FIPN+ ++ +++TGPNM GKS +L+Q LIV +AQ+G +
Sbjct: 561 IVQGRHPVLERSLQEEFIPNDTTLNREQFFLLITGPNMGGKSVFLRQTALIVAMAQMGSF 620
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I VVDRIFTR+G D+L STFM EM ETA +++N +E+SLI++DE+GR T
Sbjct: 621 VPAESARIGVVDRIFTRVGASDSLSRGLSTFMMEMVETANILKNATEKSLIILDEIGRGT 680
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG +IA + E++ + + A T+FA+H L+EL VK H V + ++ F
Sbjct: 681 STYDGMSIARAVVEYICNRIGAKTLFATHYHELTELEGQVRGVKNYHVCVKEVDGKVVFT 740
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++K GP YG+ +AE+AGLP V+E AR I
Sbjct: 741 HRVKPGPSE-KSYGIHVAELAGLPEEVVERAREI 773
>gi|238879659|gb|EEQ43297.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 803
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 188/632 (29%), Positives = 325/632 (51%), Gaps = 36/632 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +VR+LE+++ L GT+ L+ L T G R+LR ++LQP +
Sbjct: 192 MLIDTCTVRDLELVDSLSET--GTT-----LYSFLNCCLTKMGMRILRTSILQPSTHENS 244
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + + EL+++E + L K + ++V F +P+ + S+ +++N
Sbjct: 245 IILRSESVQELINDEDALISIRSSL-KHTCDLEKVFSTF-LEPRGLLSQEQEINN----- 297
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
IILLKT L ++ K +++ S LL + + + E+E + I E I D
Sbjct: 298 -----IILLKTVLQNTFVIRKSIQNVSSHLLVQV-KQILEHENVQHLLAIINEHIRNDCQ 351
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A Q+ A+K G++GLLD++RR E V L K EEL++ ++ F
Sbjct: 352 WANNSTELANQRANAVKSGVNGLLDVSRRIRETLLEEVSELVAKLSEELEIF-MEYRFEI 410
Query: 241 RQGFYLSIPHKDIQ-GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+GF++ I + LP I VK I C+T+EL + R E
Sbjct: 411 SRGFFIKIKGNNTDINSLPEVLINRVKKRKTIECTTIELMKQSSRYNDIVSEITTLNSTI 470
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ + +I +L +++E + LD++ SFA+ S + D YT P F + + I
Sbjct: 471 IHDMYTSINSYTPILLMVSEAIGTLDLLC-SFAYFTSLQK-DSYTCPEFAK--EVTIMRS 526
Query: 360 RHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPIL +++F+ NN + E + + ++TG NMSGKS YL+Q+ +VI+AQ+GC+VPA
Sbjct: 527 LHPILGGNNSNFVANNYSCNHELSRIHVITGANMSGKSVYLRQIAYLVIMAQMGCFVPAE 586
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
++ +R+ + +++R+ + DN++ N+S+F EM ETA ++ + SLI++DELGR +S +D
Sbjct: 587 YARMRIFNSLYSRISS-DNVDINASSFSKEMSETAVILNDSDRDSLILIDELGRGSSLTD 645
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
GF+I + E L+ +A I +H +++++ V H V N +L+ K+ L
Sbjct: 646 GFSICLAILEDLICKEATVITTTHFRDIAQVLANKSCVVTAHMQTVETNGQLEMKYNLVL 705
Query: 539 GPRHVPHYGLLLAEVAG-LPSTVIETARSITSRI-TKKEV---KRMEINCLQYKQIQMLY 593
G + YG+ AEV+ LP +IE ++ + + + ++K V K +++ + K + LY
Sbjct: 706 GRNDIVGYGIRFAEVSNLLPQELIEDSKVVANILRSRKPVHGDKELKLLSRRRKLVLELY 765
Query: 594 HAAQRLICLKYSNQDEESIRHALQNLKESFID 625
A LI + N D LQ L+ F++
Sbjct: 766 FA---LIYISKLNCDMNYKIQLLQTLQSKFVE 794
>gi|326800459|ref|YP_004318278.1| DNA mismatch repair protein mutS [Sphingobacterium sp. 21]
gi|326551223|gb|ADZ79608.1| DNA mismatch repair protein mutS [Sphingobacterium sp. 21]
Length = 871
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 191/592 (32%), Positives = 315/592 (53%), Gaps = 70/592 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M +D +VRNLE+I G++N+ +L +L +T + G RLL+ ++ PLKD
Sbjct: 268 MWLDRFTVRNLELI--------GSANENAITLADVLDSTSSPMGARLLKRWMVMPLKDKR 319
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I RL+ ++ L+ L L+Q +++ + +R++ + K + L
Sbjct: 320 PITERLEVVEYLLKRADLREQLTQEIKQI-GDLERLISKIGLQ--KANPREL-------- 368
Query: 120 QTLISSIILLKTALDALPLLAKVLK--DAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+ LK AL A+ L ++ DAQ+ + + C+ I RI E
Sbjct: 369 -------VQLKRALQAIGRLKELTATADAQALNVIAEQLNPCK-----IICDRI-----E 411
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
L + P + A G+D LD R+ + + + + E +P+LK+
Sbjct: 412 KELKSEPPVLLIKGNVIA--DGVDAELDRLRKVAFGGKDYLLEIQKRESEITGIPSLKIS 469
Query: 238 FNNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAG 290
FNN G+YL + HKD K+P+ +++ N T EL L +K
Sbjct: 470 FNNVFGYYLEVTNAHKD---KVPADWVRKQTLVNAERYITNELKEYEEQILGAEDKIQVI 526
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E + E+ L +L+D I+ + L A ++ LD+++N FA TI+ K + Y +P +
Sbjct: 527 ENRLYNEL-LASLLDYIKP----VQLNANLISQLDVLLN-FA-TIAHK--NHYVKPIIND 577
Query: 351 NGPLAIDGGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIV 406
+ I GGRHP++E I ++I N++F+ S++ ++I+TGPNM+GKS L+Q LIV
Sbjct: 578 GKLIDIKGGRHPVIEKNLPIGEEYITNDVFLDSDSQQIIIITGPNMAGKSALLRQTGLIV 637
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQ+GC+VPA + I +VD+IFTR+G DNL S STFM EM ETA ++ N+S+RSLI+
Sbjct: 638 LMAQMGCFVPAKHAEIGLVDKIFTRVGASDNLSSGESTFMVEMNETASILNNLSDRSLIL 697
Query: 467 MDELGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYV 523
+DE+GR TS+ DG +IAW+ E+L S KA T+FA+H L+EL + +K + V
Sbjct: 698 LDEIGRGTSTYDGISIAWAIAEYLHNHPSAKAKTLFATHYHELNELTNTFNRIKNFNVSV 757
Query: 524 VIRNNRLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
NN++ F +L G H +G+ +A++AG+P+ ++ A I R+ ++
Sbjct: 758 KEVNNKIIFLRKLVPGGSEH--SFGIHVAKMAGMPAKLVVRANEILKRLEQE 807
>gi|448497556|ref|ZP_21610509.1| DNA mismatch repair protein MutS [Halorubrum coriense DSM 10284]
gi|445699787|gb|ELZ51807.1| DNA mismatch repair protein MutS [Halorubrum coriense DSM 10284]
Length = 924
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 174/588 (29%), Positives = 295/588 (50%), Gaps = 54/588 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+++DAT+ RNLEI E + G SLF + T T G RLLR L +P +D ET
Sbjct: 263 VDVDATTQRNLEITETMRGDADG------SLFDTVDHTVTAAGGRLLREWLTRPRRDRET 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD ++ L S ++ R + + +++ ++ + ++
Sbjct: 317 LADRLDAVEALASA------------ALARDRLREVLGDAYDLERLAART--TSGSAGAR 362
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L+S + T L V A + A + + A++R + + + ED
Sbjct: 363 ELLS---IRDTLALLPALADAVDDTALADSPAAAVLGRVDRDAAAALRGELADALAED-- 417
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHN----LANKYREELKLPNLKL 236
P A+T +K G D LD + EAV++ LA + + + L ++ +
Sbjct: 418 ----PPKAKTGGGL-LKEGYDDELD----GLIERHEAVNSWLDGLAEREKRQHGLSHVTV 468
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECY 293
N G+Y+ + K + ++P + ++ N+ T ELA +R + A GE
Sbjct: 469 DRNKTDGYYIQV-GKSVADRVPEHYREIKTLKNSKRFVTDELAEKEREVLRLEEARGELE 527
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
EAL + + E +L + LD + + H +TRP TE
Sbjct: 528 YE---LFEALRERVAERAELLQDAGRAVAELDALASLATHAARRD----WTRPELTEERR 580
Query: 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
L ++ GRHP++E+ DF+PN++ + +IVTGPNMSGKSTY++Q LI +LAQ G
Sbjct: 581 LDVEAGRHPVVEAT-TDFVPNDLRLDADRGFLIVTGPNMSGKSTYMRQAALIQLLAQAGS 639
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + + +VD I+TR+G +D L STFM EM+E + ++ + + SL+++DE+GR
Sbjct: 640 FVPARAAEVGLVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATADSLVILDEVGRG 699
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
T++ DG +IAW+ E+L + ++A T+FA+H L+ LA P V+ +H V R+ + F
Sbjct: 700 TATYDGISIAWAATEYLHNEVRARTLFATHYHELTTLADHLPRVENVHVAVDERDGEVTF 759
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
++DGP + YG+ +A++AG+P V+ A + R+ +E K +E
Sbjct: 760 LRTVRDGPTN-RSYGVHVADLAGVPDPVVSRADGVLDRL--REEKAIE 804
>gi|375266646|ref|YP_005024089.1| DNA mismatch repair protein MutS [Vibrio sp. EJY3]
gi|369841966|gb|AEX23110.1| DNA mismatch repair protein MutS [Vibrio sp. EJY3]
Length = 853
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 293/578 (50%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L + T N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 266 LDAATRRNLEITQNLAGS---TDN---TLAAVLDHCATPMGSRMLKRWLHQPMRCIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + +++ D+ + +
Sbjct: 320 NRLDAIGEI-KDQSLFADLQPTLKQI-GDIERILARLALR----SARPRDMARLRHAMQQ 373
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ + + +L P L K+ + A VCE + E +
Sbjct: 374 LPELEAITASL-THPYLVKLAQ------FAAPIDDVCE--------------LLERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L + RE + LK+ +NN
Sbjct: 413 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLESDERERHGIDTLKVGYNNVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + ++ L LA + LD++ N S Y RP + + I
Sbjct: 527 --WEGLFDLLMPNLEQLQNLASAVSQLDVLQNLAERADSLD----YCRPTLVKEPGIQIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 SGRHPVVEQVTSDPFIANPIELNPQRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 641 AESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPSQLPNLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARAKLSQLEQ 797
>gi|190411083|gb|ACE78296.1| MutS [Vibrio parahaemolyticus]
Length = 847
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 295/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + +YA+ + E++ E +
Sbjct: 367 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQYAAPIDEVCELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L RE + LK+ +N
Sbjct: 413 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNAVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 527 --WEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 AGRHPVVEQVTSDPFIANPIELSSSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 641 AESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 797
>gi|215919092|ref|NP_820057.2| DNA mismatch repair protein MutS [Coxiella burnetii RSA 493]
gi|206583977|gb|AAO90571.2| DNA mismatch repair protein [Coxiella burnetii RSA 493]
Length = 871
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 176/577 (30%), Positives = 287/577 (49%), Gaps = 64/577 (11%)
Query: 3 IDATSVRNLEII-----EPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKD 57
IDA + RNLE+I E +HS W +L T T G+RLLR + +PL+D
Sbjct: 286 IDANTRRNLELITNLQGEEVHSLAW-----------LLDHTATPMGSRLLRRWINRPLRD 334
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
+ R + + L+ + + + LR + +R++ + +
Sbjct: 335 QILLQQRQNAVSTLLEKRN-YSEIYENLRHI-GDLERIVARIALRSARP----------- 381
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ L+ AL LP L + L + + N++ I+ +G + DE
Sbjct: 382 ------RDLMQLRQALGVLPTLHQQLTN------------LPLNKQLQEIKNNLG-LFDE 422
Query: 178 ------DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL 231
+ P V R A G D LD R ++ + + +L + RE K+
Sbjct: 423 LFRLLKKAIIENPPIVIRDGGVIA--DGYDAPLDELRNMSTNSHQFLIDLEQQERERTKI 480
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
+K+ +N G+Y+ I + + P+ +I+ N T EL + S+
Sbjct: 481 NTVKVGYNRIHGYYIEISRAQAK-QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSR 539
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
R + E L+D + E + L A + LD ++N+ A T + P F +
Sbjct: 540 ALAREKELYEQLLDTLIEKLIPLQQCASAIANLD-VLNTLAERADTL---NFNAPQFCDY 595
Query: 352 GPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I+ GRHPI+E++ D F+PN+ + E M+I+TGPNM GKSTY++Q LI +LA
Sbjct: 596 PIIKIEAGRHPIVENVMTDPFMPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAY 655
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + + +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+
Sbjct: 656 IGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEV 715
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++A++C +L + LKA+ +FA+H L+ LA+ VK +H V +
Sbjct: 716 GRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLQAVKNVHLDAVEHEEK 775
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+ F L++GP + YGL +A++AG+P +VI+ AR
Sbjct: 776 IIFLHALREGPAN-KSYGLQVAQLAGIPRSVIQHARQ 811
>gi|392389931|ref|YP_006426534.1| DNA mismatch repair protein MutS [Ornithobacterium rhinotracheale
DSM 15997]
gi|390521009|gb|AFL96740.1| DNA mismatch repair protein MutS [Ornithobacterium rhinotracheale
DSM 15997]
Length = 863
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 185/581 (31%), Positives = 298/581 (51%), Gaps = 55/581 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +VRNLEI H +L +L T T GTR+LR L PL +E
Sbjct: 263 MWLDSFTVRNLEIFNSPHP-------DSVTLLDILNHTLTPMGTRMLRRWLALPLSKVEP 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + +D L+ + ++ L++ L+ P + +R LC K T K+ K
Sbjct: 316 IVLRQNTVDYLLKHPEVSLPLAEELKNMP-DIER-LC-----AKIATGKI-----TPKQL 363
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
T ++ DAL + +++ Q + + + + + +++ E + +D
Sbjct: 364 TQLT---------DALASVQNIVEILQDYDPTKLKATTFSWDTLPHLHQQLTEALTDDPP 414
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
H F+ + I G+ LD R E + N+ N+ E +P+LK+ FNN
Sbjct: 415 H----FINKGN---VIAEGVSQELDELRNILSHGKEYLENMKNREIENTGIPSLKINFNN 467
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+++ + HKD K+PS +I+ N+ T EL + A E ++ E
Sbjct: 468 VFGYFIEVRNTHKD---KVPSDWIRKQTLVNSERYITEELKQYEEK-ILGAEEKILQIET 523
Query: 299 CL-EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
L + L+ AI + L A L LD ++N FAH + Y +P + N L ID
Sbjct: 524 QLFQELIAAIMPLIPKLQENANALARLDCLLN-FAHLAQK---NYYVKPSLSTNTHLHID 579
Query: 358 GGRHPILES---IHNDFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
GRHP++E + +I N++++ + ++++TGPNMSGKS L+QV LIV++AQIG
Sbjct: 580 EGRHPVIEQQLPPSSPYISNSVYLDDKDQQIMMITGPNMSGKSALLRQVALIVLMAQIGS 639
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
YVPA + I +VDRIFTR+G DNL STFM EM ETA ++ N++ +SLI++DE+GR
Sbjct: 640 YVPAKAADIGIVDRIFTRVGASDNLSMGESTFMVEMNETAQILNNLTPKSLILLDEIGRG 699
Query: 474 TSSSDGFAIAWSCCE--HLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TS+ DG +IAWS E H K T+FA+H L+E+A + +K ++ V I+ +
Sbjct: 700 TSTYDGISIAWSIAEFLHQSKFKPKTLFATHYHELNEMAKSFKRIK--NYNVSIKETKDT 757
Query: 532 FKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRI 571
F K P H +G+ +A++AG+P V+ A+ + ++
Sbjct: 758 ILFLRKLQPGGSEHSFGIHVAKLAGMPQAVLNRAKEVLKQL 798
>gi|422345812|ref|ZP_16426726.1| DNA mismatch repair protein mutS [Clostridium perfringens
WAL-14572]
gi|373227477|gb|EHP49791.1| DNA mismatch repair protein mutS [Clostridium perfringens
WAL-14572]
Length = 909
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 175/575 (30%), Positives = 303/575 (52%), Gaps = 48/575 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL N + ++ + I + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNL---DDLRDIYDLLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G +G +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNGEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNM+GKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++ +G YG+ +A++AG+P VI A+ I
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDEVINRAKEI 795
>gi|153839201|ref|ZP_01991868.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus AQ3810]
gi|149747266|gb|EDM58252.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus AQ3810]
Length = 853
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 295/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + +YA+ + E++ E +
Sbjct: 367 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQYAAPIDEVCELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L RE + LK+ +N
Sbjct: 413 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNAVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 527 --WEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 AGRHPVVEQVTSDPFIANPIELSPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 641 AESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 797
>gi|355677525|ref|ZP_09060428.1| DNA mismatch repair protein mutS [Clostridium citroniae WAL-17108]
gi|354813090|gb|EHE97703.1| DNA mismatch repair protein mutS [Clostridium citroniae WAL-17108]
Length = 888
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 188/615 (30%), Positives = 309/615 (50%), Gaps = 78/615 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ RNLE++E + K+ +L +L TKT G RLLR+ + QPL +
Sbjct: 269 MVIDTSTRRNLELVETMRE-----KQKRGTLLWVLDKTKTAMGARLLRSYIEQPLIHKDE 323
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + ++EL N + ++L + +R++ +K T+ D
Sbjct: 324 IMKRQEAVEELNMNYISREEICEYLNPI-YDLERLIGRISYK----TANPRD-------- 370
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCEN-EKYASIRKRIGEVIDEDV 179
+I K++L+ LP + ++L + LL RS+ E + I + IGE I ED
Sbjct: 371 -----LIAFKSSLEMLPHIKRILGEFTGELL----RSLAEELDSLQDIYELIGEAILEDP 421
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P R + IK G + D R++ + + L +K +E+ + LK+ FN
Sbjct: 422 -----PVTVR--EGGIIKDGYNEEADKLRQAKTEGKNWLAELESKEKEKTGIKTLKVKFN 474
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGE--- 291
G+Y + + + ++P F++ N +T EL L +K + E
Sbjct: 475 KVFGYYFEVTNS-FKDQVPDYFVRKQTLTNAERFTTDELKHLEDIIMGAEDKLVSLEYDL 533
Query: 292 -CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
C +R I A V I++ + + +V C L ++ ST+ Y +P E
Sbjct: 534 FCQVRDSIA--AQVVRIQKTAKAIAGV-DVFCSLSVV--------STRR--NYVKPMINE 580
Query: 351 NGPLAIDGGRHPILESIHND--FIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVI 407
G + I GRHP++E + D F+ N+ F+ N + ++TGPNM+GKSTY++QV LIV+
Sbjct: 581 KGVIQIKNGRHPVVEQMMRDDLFVANDTFLDNGKNRLSVITGPNMAGKSTYMRQVALIVL 640
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+G +VPA + I + DRIFTR+G D+L S STFM EM E A +++N + SL+V+
Sbjct: 641 MAQLGSFVPAQEADIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRNSLLVL 700
Query: 468 DELGRATSSSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAW+ EH+ S K A T+FA+H L+EL VK ++ +
Sbjct: 701 DEIGRGTSTFDGLSIAWAVIEHISSTKLLGAKTLFATHYHELTELEGTIAGVK--NYCIA 758
Query: 525 IRNNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-------K 574
++ D F ++ G YG+ +A++AG+P +VI A+ I ++ K
Sbjct: 759 VKEQGDDIVFLRKIVRGGADK--SYGIQVAKLAGVPDSVIARAKEIAEELSDADITARAK 816
Query: 575 EVKRMEINCLQYKQI 589
E+ + N Q+K +
Sbjct: 817 EIAEISSNITQHKAV 831
>gi|28899326|ref|NP_798931.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus RIMD
2210633]
gi|260361828|ref|ZP_05774844.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus K5030]
gi|260878983|ref|ZP_05891338.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus AN-5034]
gi|260895456|ref|ZP_05903952.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus Peru-466]
gi|31076795|sp|Q87LQ9.1|MUTS_VIBPA RecName: Full=DNA mismatch repair protein MutS
gi|28807550|dbj|BAC60815.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus RIMD
2210633]
gi|308088221|gb|EFO37916.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus Peru-466]
gi|308090457|gb|EFO40152.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus AN-5034]
gi|308114478|gb|EFO52018.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus K5030]
Length = 853
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 295/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + +YA+ + E++ E +
Sbjct: 367 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQYAAPIDEVCELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L RE + LK+ +N
Sbjct: 413 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNAVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 527 --WEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 AGRHPVVEQVTSDPFIANPIELSPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 641 AESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 797
>gi|423097032|ref|ZP_17084828.1| DNA mismatch repair protein MutS [Pseudomonas fluorescens Q2-87]
gi|397888160|gb|EJL04643.1| DNA mismatch repair protein MutS [Pseudomonas fluorescens Q2-87]
Length = 859
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 177/573 (30%), Positives = 283/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLT 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + CL + EQL L + + +R+L + NA+
Sbjct: 324 ARQSSITCLLDRYRFEQLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + D ++ L + R+ + A++ + +ID
Sbjct: 367 -----DLARLRDALGALPELQVAMTDLEAPHLQQLARTTSTYPELAALLAKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + + SA R ++
Sbjct: 472 RIHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 531 YEALLEDLISQLPPLQDTAGALAELDVLSNLAERALNLD----LNCPRFVSEPCMRISQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAHLRAYTLFATHYFELTVLPESQPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVISRAREHLSRL 798
>gi|190411087|gb|ACE78298.1| truncated MutS [Vibrio parahaemolyticus]
Length = 848
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 295/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + +YA+ + E++ E +
Sbjct: 367 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQYAAPIDEVCELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L RE + LK+ +N
Sbjct: 413 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNAVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 527 --WEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 AGRHPVVEQVTSDPFIANPIELSPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 641 AESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 797
>gi|110799241|ref|YP_695804.1| DNA mismatch repair protein MutS [Clostridium perfringens ATCC
13124]
gi|123049875|sp|Q0TRD6.1|MUTS_CLOP1 RecName: Full=DNA mismatch repair protein MutS
gi|110673888|gb|ABG82875.1| DNA mismatch repair protein MutS [Clostridium perfringens ATCC
13124]
Length = 910
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 175/575 (30%), Positives = 303/575 (52%), Gaps = 48/575 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL N + ++ + I + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNL---DDLRDIYDLLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G +G +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNGEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNM+GKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++ +G YG+ +A++AG+P VI A+ I
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDEVINRAKEI 795
>gi|71738021|ref|YP_275945.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|90109852|sp|Q48F92.1|MUTS_PSE14 RecName: Full=DNA mismatch repair protein MutS
gi|71558574|gb|AAZ37785.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 859
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 175/590 (29%), Positives = 291/590 (49%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D ++ L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLEAPHLQQLAQTASTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVSNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 807
>gi|378949103|ref|YP_005206591.1| protein MutS [Pseudomonas fluorescens F113]
gi|359759117|gb|AEV61196.1| MutS [Pseudomonas fluorescens F113]
Length = 859
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 284/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 323
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + EQL L + + +R+L + NA+
Sbjct: 324 ARQTSITCLLDRYRFEQLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + D ++ L + R+ + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPELQVAMTDLEAPHLQQLARTTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +++ T EL + + SA R ++
Sbjct: 472 RIHGYFIELPSKQAE-QAPADYVRRQTLKGAERFITPELKAFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 531 YEALLEDLISQLPPLQDTAGALAELDVLSNLAERALNLD----LNCPRFVSEPCMRISQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAHLRAYTLFATHYFELTVLPESQPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVISRAREHLSRL 798
>gi|373956737|ref|ZP_09616697.1| DNA mismatch repair protein mutS [Mucilaginibacter paludis DSM
18603]
gi|373893337|gb|EHQ29234.1| DNA mismatch repair protein mutS [Mucilaginibacter paludis DSM
18603]
Length = 869
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 201/655 (30%), Positives = 332/655 (50%), Gaps = 112/655 (17%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+D S+RNLE+I G+ N +L +L T + G R+LR ++ PLK+ + I
Sbjct: 268 LDRFSIRNLELI--------GSHNDNAVTLVDVLDHTCSPMGARMLRRWIVMPLKERKPI 319
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKK 118
RL+ ++ L+++E+L L Q +R+ + +R++ + P++V
Sbjct: 320 EDRLNVVEYLIAHEELKEELKQQIRQI-GDLERLISKIGLQKANPREV------------ 366
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID-- 176
+ LK AL A N+ + +C + A++R IGE ++
Sbjct: 367 --------VQLKKALAA----------------TNVIKGICSQSESAALRT-IGEQLNPC 401
Query: 177 -------EDVLHARVPFVARTQQCFAIKGGI--DGL---LDIARRSFCDTSEAVHNLANK 224
E L A P IKGG+ +G+ LD R+ + + +
Sbjct: 402 VLIREKIEKELQADPP-------VMIIKGGVIAEGINEELDRLRKIAFGGKGYLLEIQKR 454
Query: 225 YREELKLPNLKLPFNNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-- 280
E ++P+LK+ FNN G+YL + HKD K+P+ +I+ N T EL
Sbjct: 455 EAEITRIPSLKVAFNNVFGYYLEVSNAHKD---KVPTEWIRKQTLVNAERYITPELKEYE 511
Query: 281 ---LNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTIST 337
L K A E + E+ E + + + + L A+++ LD+++N FA TI+
Sbjct: 512 EQILGAEEKILALETRLYNELLYE-----LTQYIKPIQLNAQLVAQLDVLLN-FA-TIAI 564
Query: 338 KPVDRYTRPHFTENGPLAIDGGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMS 393
K + Y +P E + I GGRHP++E + ++I N++++ S++ ++I+TGPNM+
Sbjct: 565 K--NYYVKPDINEGSIIDIKGGRHPVIEKNLPLGEEYITNDVYLDSDSQQIIIITGPNMA 622
Query: 394 GKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETA 453
GKS L+Q LIV++AQ+G +VPA +T+ +VD+IFTR+G DNL S STFM EM ETA
Sbjct: 623 GKSALLRQTGLIVLMAQMGSFVPAKEATVGLVDKIFTRVGASDNLSSGESTFMVEMNETA 682
Query: 454 FVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELA 510
++ N+S+RSLI++DE+GR TS+ DG +IAW+ E+L S KA T+FA+H L+EL
Sbjct: 683 SILNNLSDRSLILLDEIGRGTSTYDGISIAWAIAEYLHNHPSAKAKTLFATHYHELNELT 742
Query: 511 TIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITS 569
+ +K +F V ++ F K P H +G+ +A++AG+P V+ A I
Sbjct: 743 NSFHRIK--NFNVTVKEVGHKIIFLRKLVPGGSEHSFGIHVAKLAGMPPRVLSRANEILK 800
Query: 570 RI----TKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLK 620
++ T E + I +Q + +QM + + +K IR L NL+
Sbjct: 801 KLEAERTGGESIKESIKKVQKQAVQMQMFSIDDPVLVK--------IRDMLNNLE 847
>gi|148284577|ref|YP_001248667.1| DNA mismatch repair protein MutS [Orientia tsutsugamushi str.
Boryong]
gi|189083163|sp|A5CDU2.1|MUTS_ORITB RecName: Full=DNA mismatch repair protein MutS
gi|146740016|emb|CAM80100.1| DNA mismatch repair protein [Orientia tsutsugamushi str. Boryong]
Length = 889
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 189/579 (32%), Positives = 286/579 (49%), Gaps = 53/579 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M IDA++ +NLE+ L + N K SL ++ T T G RLL L PL ++
Sbjct: 282 MLIDASARKNLELTSTL------SGNFKGSLLSIIDATVTNQGGRLLHKFLSTPLAEVNL 335
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN+RL D N QL L Q ++ P + +R L + +K L D
Sbjct: 336 INSRLQITDFFYQNLQLVENLRQLVKLVP-DIERALSRI------LIAKALPKD------ 382
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQS-FLLANIYRSV-CENEKYASIRKRIGEVIDED 178
L S I LK AL L KVL++ + L IY + +NE Y +
Sbjct: 383 -LESIKISLKIALSIKKELNKVLEEGNTPKYLEEIYNPLFGDNELY-----------ELL 430
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
C IK L+ R ++S + L +YR+E + LK+
Sbjct: 431 DSALLDDLSNSANDCGFIKSSYSTKLEELRNLIHNSSNFIEQLKLQYRQETCIETLKICH 490
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQ-----VVKHGNNIHCSTLELASLNVRNKSAAGECY 293
NN G ++ + K+ S F+ TLE LN + +AA E
Sbjct: 491 NNVWGMFIEVSSKNAHKITDSKFVHKQTTTTAVRFTTTELQTLEAKMLNAKTMAAALEQE 550
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
I E+C AI L+ LA+ + L+D+ N FA+ IS + Y RP T +
Sbjct: 551 ILAELC-----KAISLKSEKLSHLAKSISLIDVFCN-FAY-ISHEY--NYCRPEITSDLA 601
Query: 354 LAIDGGRHPILESI----HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
I GRH ++E + H FI N+ + + ++TGPNM+GKST+L+Q +IVILA
Sbjct: 602 FNIVDGRHAVIEKLITKKHESFISNDCNLQNDQRIWLITGPNMAGKSTFLRQNAIIVILA 661
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
QIGCYVPA + I VVD++F+R+G D+L S STFM EM ET+ ++ + SL+++DE
Sbjct: 662 QIGCYVPAQSAQIGVVDKLFSRIGAADDLASGQSTFMVEMVETSVILAQSTFMSLVILDE 721
Query: 470 LGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
+GR TS+ DG +IAWSC E++ S ++ +FA+H L +LA+ ++K + N+
Sbjct: 722 IGRGTSTYDGISIAWSCLEYIHSNIRCRCLFATHYHELVDLASKLLSLKNFTVKIHDSND 781
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+L F +++ +G + YG+ +AE+AGLP V+ A+ I
Sbjct: 782 KLSFLYKIIEGAAN-KSYGIHVAELAGLPRIVLNRAKEI 819
>gi|358637447|dbj|BAL24744.1| DNA mismatch repair protein [Azoarcus sp. KH32C]
Length = 868
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 189/636 (29%), Positives = 294/636 (46%), Gaps = 66/636 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ E L + +L +L T G+R LR L PL+D
Sbjct: 274 LRLDAATRRNLELTETLRG------DPAPTLMSLLDGCVTSMGSRWLRHALHHPLRDRGY 327
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETD---RVLCHFCFKPKKVTSKVLDVDNAK 117
R + EL+ ETD R+L + + V DVD
Sbjct: 328 AAARHSAVGELIG----------------AETDGDTRMLS----QARTALRGVADVDRIT 367
Query: 118 KSQTLISS----IILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE 173
L S+ + L+ +L LP L L QS +LA + ++
Sbjct: 368 ARIALRSARPRDLAALRDSLARLPELHDALGQPQSAMLAELLGALA-------------- 413
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGI-----DGLLDIARRSFCDTSEAVHNLANKYREE 228
+ +D LH + VA GG+ D LD R + E + L + RE
Sbjct: 414 -VPDDALHLMIQAVAAEPAAAVRDGGVIATGYDAELDELRGIQTNCGEFLLALETRERER 472
Query: 229 LKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSA 288
+ +LK+ FN GFY+ + H + + K+P + + N T EL + + SA
Sbjct: 473 TGITSLKVEFNKVHGFYIEVSHANAE-KVPDDYRRRQTLKNAERYITPELKAFEDKALSA 531
Query: 289 AGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
R ++ EAL++ + + +A L LD + +F S Y RP F
Sbjct: 532 QERALAREKMLYEALLEQLATHIGTFQRIARALACLDGLA-AFGDAASRYG---YVRPEF 587
Query: 349 TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
++ + I GRHP++E +FIPN+ +S M+++TGPNM GKST+++QV LI +L
Sbjct: 588 SDQPGMEIIAGRHPVVERQVENFIPNDCRLSPTRRMLMITGPNMGGKSTFMRQVALIALL 647
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
A +G +VPA + I +D IFTR+G D+L S STFM EM E + ++ +E+SL++MD
Sbjct: 648 AHVGAFVPARSARIGPLDAIFTRIGASDDLASGRSTFMVEMTEASAILHGATEQSLVLMD 707
Query: 469 ELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS+ DG A+A++ HLL + T+F++H L+ L YP +H V
Sbjct: 708 EIGRGTSTFDGLALAFAIARHLLDKNRCQTLFSTHYFELTRLNGDYPECANVHLDAVEHA 767
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME----INC 583
+R+ F L++GP YG+ +A +AG+P VI A+ + +EV
Sbjct: 768 HRIVFLHALEEGPASQ-SYGIEVAALAGIPGAVIRDAKRRLRALENREVGAGPQPDLFAA 826
Query: 584 LQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNL 619
L + + L H L L + D S R AL++L
Sbjct: 827 LPEPEDEKLSHPV--LTALAGIDPDSLSPREALEHL 860
>gi|417318951|ref|ZP_12105509.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus 10329]
gi|328474141|gb|EGF44946.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus 10329]
Length = 853
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 295/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + +YA+ + E++ E +
Sbjct: 367 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQYAAPIDEVCELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L RE + LK+ +N
Sbjct: 413 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNAVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 527 --WEELFDLLMPHLEQMQNLASAVSQIDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 AGRHPVVEQVTSDPFIANPIELSPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 641 AESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 797
>gi|410089201|ref|ZP_11285827.1| DNA mismatch repair protein MutS [Pseudomonas viridiflava
UASWS0038]
gi|409763488|gb|EKN48448.1| DNA mismatch repair protein MutS [Pseudomonas viridiflava
UASWS0038]
Length = 859
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 175/590 (29%), Positives = 290/590 (49%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDGASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + + ++ L + R+ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMSELEAPHLQQLARTASTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQFLIDLEAREKSRTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YEALLEDLIGHLAPLQDTASALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ D
Sbjct: 647 QCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVSNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVITRA--------KEHLQRLETTSLPHEQ 807
>gi|421504007|ref|ZP_15950951.1| DNA mismatch repair protein MutS [Pseudomonas mendocina DLHK]
gi|400345108|gb|EJO93474.1| DNA mismatch repair protein MutS [Pseudomonas mendocina DLHK]
Length = 855
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 174/570 (30%), Positives = 280/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D +
Sbjct: 266 LDGASRRNLELDVNL------AGGRDNTLQSVMDRCQTAMASRLLGRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQDAIACLLDGYR-FETLQPQLKEI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + + L + S+ + A + R +ID
Sbjct: 363 --DLARLRDALAALPDLQQAMTTLDTPHLQQLATSIATYPELADLLARA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKTGYDAELDELQAMSENAGQFLMDLEAREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + P+ +I+ T EL + SA R ++ +
Sbjct: 471 GYFIELPTKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYDE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F + + ID GRHP
Sbjct: 530 LLERLIGHLAPLQDSAAALAELDVLSNLAERALNLD----LNRPRFVDEPCMRIDRGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY+ Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLDLDDNRRMLIITGPNMGGKSTYMCQTALIVLLAHIGSFVPAAACE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N SERSL++MDE+GR TS+ DG +
Sbjct: 646 MSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASERSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AWS EHL L+A+T+FA+H L+ L P V +H N R+ F ++ GP
Sbjct: 706 LAWSAAEHLAGLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVQPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P +VI AR +R+
Sbjct: 766 SQ-SYGLAVAQLAGVPGSVISRAREHLARL 794
>gi|359780473|ref|ZP_09283699.1| DNA mismatch repair protein MutS [Pseudomonas psychrotolerans L19]
gi|359371785|gb|EHK72350.1| DNA mismatch repair protein MutS [Pseudomonas psychrotolerans L19]
Length = 858
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 175/570 (30%), Positives = 280/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T G+RLL L +PL++ I
Sbjct: 266 LDGASRRNLELDVNL------AGGRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRNRAIIE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + F L L+ + +R+L + NA+
Sbjct: 320 ARQDAITCLLEGYR-FESLQPQLKDI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP+L + L + L ++ RS+ + A+ R +ID
Sbjct: 363 --DLARLRDALAALPMLQEGLTQMIAPHLLDLARSIQTYPELAATLARA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + L LK+ +N
Sbjct: 415 --PAVIRDGGV--IKRGYDSELDELQTLSENAGQFLMDLEAREKARTGLQGLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ IP + + P+ +I+ T EL + + SA R + EA
Sbjct: 471 GYFIEIPSRQAESA-PADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEA 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L+D + ++ L A L LD++ N ++ +P F E L I GRHP
Sbjct: 530 LLDELIGHLAPLQDSAAALAELDVLANFAERALNLD----LNKPRFVEEPCLKIGQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA +G +VPA
Sbjct: 586 VVEQVLETPFVANDVALDNDTRMLVITGPNMGGKSTYMRQTALIVLLAHVGSFVPAASCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N SE SL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASEHSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+A+T+FA+H L+ L P+V +H N+R+ F + GP
Sbjct: 706 LAWAAAEQLARLRAWTLFATHYFELTVLPDGQPSVANVHLNATEHNDRIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI AR +R+
Sbjct: 766 SQ-SYGLAVAQLAGVPEDVILRAREHLARL 794
>gi|416025758|ref|ZP_11569406.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320329641|gb|EFW85630.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 859
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 175/590 (29%), Positives = 291/590 (49%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D ++ L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLEAPHLQQLAQTASTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIR--DGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVSNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 807
>gi|448620281|ref|ZP_21667629.1| DNA mismatch repair protein MutS [Haloferax denitrificans ATCC
35960]
gi|445757069|gb|EMA08425.1| DNA mismatch repair protein MutS [Haloferax denitrificans ATCC
35960]
Length = 942
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 177/605 (29%), Positives = 293/605 (48%), Gaps = 93/605 (15%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ E SA G++ LF +L T G R L A L +PL D +
Sbjct: 288 LQLDATAIRSLELFES-RSARAGST-----LFSVLDETACALGRRRLEAWLRRPLVDRDR 341
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++ L + L + L + +++ ++V + +
Sbjct: 342 IEARLDAVEALCDDALARADLREHLSS------------VYDLERLVARV------SRER 383
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P + + L S LL+++ S+ E E +R +G+ + D
Sbjct: 384 ADARDLRSLKTTLDRVPKVREALAGTDSDLLSDLRDSLDELED---VRDLVGDAVVSDPP 440
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G D LD R + E V NL + +E + +L++ +N
Sbjct: 441 Q-------EITEGGVIADGFDAELDEVRGTAEAGREWVSNLEAREQERTGIDSLEVGYNQ 493
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE---- 291
G+Y+ + + ++ ++P + Q +K+ + L E L +++ A E
Sbjct: 494 VHGYYIEVTNPNLD-RVPDDYQRRQTLKNSERFYTPELKEREDEILRASDRADALEYDLF 552
Query: 292 CYIRTEICLE-----ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
C +R E+ E A+ DA+ D+ VL LA+V D Y RP
Sbjct: 553 CEVRAEVATESARIQAVADAL-ADLDVLRTLADVAVAND-----------------YARP 594
Query: 347 HF-----------------------TENGPLAIDGGRHPILESIHNDFIPNNIFISEAAN 383
F E G + ID GRHP++E ++F+PN + +
Sbjct: 595 EFHAGGERAGDGAADDAPDDPNDGTAETGGIRIDAGRHPVVERAQDEFVPNPADLPRG-S 653
Query: 384 MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSS 443
+ +VTGPNMSGKSTY++QV L+ +LAQ+G +VPA + + V+DR+FTR+G D++ S
Sbjct: 654 VALVTGPNMSGKSTYMRQVALVCVLAQVGSFVPAKSARLPVLDRVFTRIGASDDIAGGQS 713
Query: 444 TFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASH 502
TFM EM E ++ N + SL+++DE+GR TS++DG AIA + E L + A T+FA+H
Sbjct: 714 TFMREMSELTEILHNATGDSLVLLDEVGRGTSTADGLAIARAATEFLHDEVGATTLFATH 773
Query: 503 MENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
+L++ A V LHF R+ + F + DGP YG+ +A++AG+P++V+
Sbjct: 774 YHDLTDAADDREGVFNLHFTAARRDGEVTFLHSVADGPSS-SSYGVEVAQLAGVPASVVG 832
Query: 563 TARSI 567
AR +
Sbjct: 833 RARDL 837
>gi|190411085|gb|ACE78297.1| truncated MutS [Vibrio parahaemolyticus]
Length = 837
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 295/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 255 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 308
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 309 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 355
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + +YA+ + E++ E +
Sbjct: 356 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQYAAPIDEVCELL-ERAIKE 401
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L RE + LK+ +N
Sbjct: 402 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNAVH 459
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 460 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 515
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 516 --WEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 569
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 570 AGRHPVVEQVTSDPFIANPIELSPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 629
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 630 AESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 689
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 690 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 749
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 750 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 786
>gi|335045167|ref|ZP_08538190.1| DNA mismatch repair protein MutS [Oribacterium sp. oral taxon 108
str. F0425]
gi|333758953|gb|EGL36510.1| DNA mismatch repair protein MutS [Oribacterium sp. oral taxon 108
str. F0425]
Length = 907
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 182/582 (31%), Positives = 294/582 (50%), Gaps = 62/582 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ S RNLE+ E L K+ +L +L TKT G+R+LR L +PL+D +
Sbjct: 268 MIVDSYSQRNLELWETLRE-----KKKRGTLLWVLDYTKTAMGSRMLRHFLERPLRDKKK 322
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++E + L ++L + +R+L L NA+
Sbjct: 323 IEARLDAVEEFNGHYIDMEELREYLDSI-YDIERLLSRIS----------LSTANAR--- 368
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSV-CENEKYASIRKRIGEVIDEDV 179
++ LK +L LP + K L QS LL+ + + C + Y RK E+++E
Sbjct: 369 ----DLLALKLSLQYLPDIKKALLPFQSSLLSKMREELDCLEDIY---RKIEEEIVEEPP 421
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
L + + IK ++ R + + E + L + RE+ + NLK+ +N
Sbjct: 422 LSVK--------EGGLIKASFSKDVEDYRNAGVNGKEWLQELEAREREKTGIKNLKIKYN 473
Query: 240 NRQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLEL-------ASLNVRNKSAAG 290
G+ + K QG++P FI Q + G + LE A +++ A
Sbjct: 474 RIFGYCFEVS-KAYQGEIPDYFIRRQTLAQGERYITTELEELQNRILGAEEKLKDLEYAL 532
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
C +R EI E + I++ L L L L + + + Y RP +E
Sbjct: 533 FCTLREEIAAE--LPRIQKTARELAHLDAYLSLAKLAIK-----------ENYVRPRLSE 579
Query: 351 NGPLAIDGGRHPILESIHND--FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
G L I GRHP++E + + FIPN+ + E + I+TGPNM+GKSTY++QV LIV+L
Sbjct: 580 GGSLFIKEGRHPVVEKLLEEEHFIPNDTSLEENQEIAIITGPNMAGKSTYMRQVALIVLL 639
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
+ IG +VPA + + + DRIFTR+G D+L STFM EM E A +++N +++SL+++D
Sbjct: 640 SAIGSFVPAKEAELPICDRIFTRVGASDDLAQGQSTFMVEMSEVANILRNATKQSLLILD 699
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS+ DG +IAW+ E++ ++A T+FA+H L+EL NVK V ++
Sbjct: 700 EIGRGTSTFDGLSIAWAVVEYIARHIQAKTLFATHYHELTELEGKLNNVKNYCIAVSKKD 759
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
+ F ++ G YG+ +A++AG+P V+ AR I++
Sbjct: 760 GEISFLRKIIPGGAD-ESYGIDVAKLAGVPEGVLSRAREISA 800
>gi|149374515|ref|ZP_01892289.1| DNA mismatch repair protein [Marinobacter algicola DG893]
gi|149361218|gb|EDM49668.1| DNA mismatch repair protein [Marinobacter algicola DG893]
Length = 877
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 170/571 (29%), Positives = 283/571 (49%), Gaps = 43/571 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DATS RNLEI L + GT + +L ++ T T G R LR L +PL+DI +
Sbjct: 270 LDATSRRNLEIDTNL---MGGT---QHTLAWVMDRTATAMGGRQLRRWLNRPLRDITVVE 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + L K + +R+L + +
Sbjct: 324 QRQQAVSALLDG--FHYEPVHDLLKSIGDIERILARVALRSARP---------------- 365
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A +LP L + L S + + + E + + + +R +ID
Sbjct: 366 -RDLARLRDAFLSLPDLQRALTPVSSHHVVKLATIISEYPELSDLLERA--IIDNP---- 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R I+ G D LD R + + + ++ + RE + LK+ +N
Sbjct: 419 --PVVIRDGGV--IREGFDDELDELRNISENAGQFLLDVETRERERTGISTLKVGYNRVH 474
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I G+ P +I+ N T EL + SA R + +
Sbjct: 475 GYYIEITRAQ-SGQAPVDYIRRQTLKNAERFITPELKEFEDKALSAKSRSLAREKALYDE 533
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
+++ + +++ L A+ L LD++ N FA ++ R+ P F++ I+ GRHP
Sbjct: 534 VLETVAAELAPLQDAAQALAELDVLSN-FAERATSL---RFNAPEFSDTPGFDIEEGRHP 589
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + +D ++PN++ + + M+++TGPNM GKSTY++Q LI +LA G YVPA+
Sbjct: 590 VVEQLLSDPYVPNDLLMDQQRRMLVITGPNMGGKSTYMRQAALIALLAYTGSYVPANRVV 649
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +DRIFTRMG+ D++ STFM EM ETA ++ N +E SL++MDE+GR TS+ DG +
Sbjct: 650 IGPLDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEYSLVLMDEVGRGTSTFDGLS 709
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+ EHL ++ YT+FA+H L++LA + +H ++ + F + DGP
Sbjct: 710 LAWATAEHLAKHIRCYTLFATHYFELTQLADDLEHAVNVHLTATEHDDTIVFLHNVHDGP 769
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI A++ S +
Sbjct: 770 AS-QSYGLQVAKLAGVPQDVIRNAKAQLSHL 799
>gi|90416734|ref|ZP_01224664.1| DNA mismatch repair protein [gamma proteobacterium HTCC2207]
gi|90331487|gb|EAS46723.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2207]
Length = 851
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 173/572 (30%), Positives = 287/572 (50%), Gaps = 53/572 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+++DA+S RNLE+ + T + +LF +L T+ T +RLLR L +PL+ + T
Sbjct: 255 VSLDASSRRNLELDNNM------TGGSENTLFEVLDTSATTMASRLLRRWLNRPLQHLPT 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + L N L+ L L++ + +R+L + P+ +T
Sbjct: 309 LQARQQSIAALHHN-YLYEVLHGHLKQI-GDMERILTRVALRSARPRDLTR--------- 357
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L +L LP LA L + + L ++ + E + +G + E
Sbjct: 358 -----------LHQSLAVLPQLATALANPSTAHLGDLATAA---EPLPELVHLLGSAVQE 403
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P V R + I G D LD R + E + L + + + LK+
Sbjct: 404 NP-----PVVIR--EGGVIADGYDSQLDELRALNTNAGEFLLELEEREKVRSGISTLKVG 456
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N G+Y+ I + P +I+ N T EL + SA R +
Sbjct: 457 YNRVHGYYIEI-SRGQSDNAPVDYIRRQTLKNAERFITPELKEFEDKALSAKSRSLAREK 515
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLA 355
E L++ + + ++ L A + +D++ AH+++ + +P+ + ++
Sbjct: 516 FLYEQLLEQLNDSLAALQNCAAAVSEIDVLATLAERAHSLN------FCQPNLSLEAGIS 569
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + ND F+ N++ + M+++TGPNM GKSTY++Q LIV+LAQIG +
Sbjct: 570 IQGGRHPVVEKVSNDPFVANHLEMHSERKMLVITGPNMGGKSTYMRQAALIVLLAQIGSF 629
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA +TI +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR T
Sbjct: 630 VPAASATIGLVDRIFTRIGSSDDLAGGRSTFMVEMTETANILHNASDRSLVLMDEVGRGT 689
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+C HL ++A+T+FA+H L+ L +H N + F
Sbjct: 690 STFDGLSLAWACAYHLAEKVRAFTLFATHYFELTSLPDKVSGACNIHLGATEYNENIVFL 749
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++GP + YG+ +A++AGLP VI AR
Sbjct: 750 HSIEEGPAN-KSYGIQVAKLAGLPEEVISLAR 780
>gi|308048571|ref|YP_003912137.1| DNA mismatch repair protein MutS [Ferrimonas balearica DSM 9799]
gi|307630761|gb|ADN75063.1| DNA mismatch repair protein MutS [Ferrimonas balearica DSM 9799]
Length = 854
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 175/577 (30%), Positives = 282/577 (48%), Gaps = 49/577 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L T L +L T T G+RLL+ L QPL +
Sbjct: 271 LDAATRRNLELTQNLAGGFDNT------LAAVLDRTTTAMGSRLLKRWLHQPLTQRSVLE 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
RLD + + ++ + L++ L+ + +RVL + P+ +T
Sbjct: 325 GRLDSV-ACLKDQTAYLDLAELLKPV-GDLERVLARLALRSARPRDLTR----------- 371
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ AL LP L ++L + LA ++ + E + + R
Sbjct: 372 ---------LRQALGQLPQLRELLAELPGRQLAQLHNQLGEFPEQLDLLTR--------A 414
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ P V R A G + LD R ++ + L + RE + LK+ +N
Sbjct: 415 IKDNPPVVIRDGGVLA--EGYNAELDELRALSQGATDFLTQLEQQERERSGIATLKVGYN 472
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + + +PS +++ N EL L + ++ + +
Sbjct: 473 KVHGFFIEV-SRAQSALVPSNYVRRQTLKNTERYIVPELKELEDKVLTSQSQALALEKRL 531
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L D + + L A LD++ N A T +D Y RP +E + ID G
Sbjct: 532 YEELFDLLLPVLPALQESAFACAELDVLQN-LAERADT--LD-YHRPQLSEQPGIQIDNG 587
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + ++ FI N + +S M+IVTGPNM GKSTY++Q LI +LA IG +VPA
Sbjct: 588 RHPVVEQVMSEPFIANPVLLSPQRRMLIVTGPNMGGKSTYMRQTALITLLAHIGSFVPAE 647
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ + VDRIFTR+G D+L S STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 648 HAVVGPVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLMDEIGRGTSTYD 707
Query: 479 GFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+ +HL S++A T+FA+H L+EL + V +H V + + F ++
Sbjct: 708 GLSLAWAAAQHLAKSIRAMTLFATHYFELTELPSQLEGVHNVHLDAVEHGDTIAFMHAVQ 767
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
+GP YGL +A +AG+P V+ A+ S++ ++
Sbjct: 768 EGPASR-SYGLQVAALAGVPKLVVAAAKQRLSQLEQQ 803
>gi|416018037|ref|ZP_11565038.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. glycinea
str. B076]
gi|320323087|gb|EFW79176.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. glycinea
str. B076]
Length = 859
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 175/590 (29%), Positives = 291/590 (49%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D ++ L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLEAPHLQQLAQTASTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIR--DGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GISLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVSNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 807
>gi|197301744|ref|ZP_03166814.1| hypothetical protein RUMLAC_00470 [Ruminococcus lactaris ATCC
29176]
gi|197299184|gb|EDY33714.1| DNA mismatch repair protein MutS [Ruminococcus lactaris ATCC 29176]
Length = 877
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 180/594 (30%), Positives = 297/594 (50%), Gaps = 69/594 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+++ RNLE+ E L K+ SL +L T+T G R LR + QPL D
Sbjct: 261 MMLDSSTRRNLELCETLRE-----KQKRGSLLWVLDKTRTAMGARTLRKFVEQPLIDKNE 315
Query: 61 INTRLDCLDEL----MSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDV 113
IN RLD ++EL +S E++ LS + +R++ + P+ +T+
Sbjct: 316 INRRLDAVEELKEQAISREEIREYLSPVY-----DLERLITKITYGSANPRDLTA----- 365
Query: 114 DNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE 173
K++L+ LP + +L++ + LL IY + E + + +
Sbjct: 366 ---------------FKSSLEMLPPIRYILEEMKVPLLQEIYEDLDALEDLCDL---VTK 407
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I E+ P +A ++ I+ G + +D RR+ D + + L RE+ + N
Sbjct: 408 AIREE------PPIA-MKEGNIIREGYNEEVDKLRRAKSDGKDWLAKLEEDEREKTGIKN 460
Query: 234 LKLPFNNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
LK+ +N G+YL + +KD+ +P + + N T EL L A +
Sbjct: 461 LKIKYNKVFGYYLEVTNSYKDL---VPDYYTRKQTLANAERYITPELKELEDMILGAEDK 517
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
Y + + I V + A+ + LD+ F + Y RP E
Sbjct: 518 LYALEYELYSEVRETIAAQVERIQKTAKAVAGLDV----FTSLALVAERNHYVRPKINEK 573
Query: 352 GPLAIDGGRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVIL 408
G + I GRHP++E I ND FI N+ ++ + N + I+TGPNM+GKSTY++Q LI ++
Sbjct: 574 GIIDIKEGRHPVVEKMIPNDMFISNDTYLDDKKNRISIITGPNMAGKSTYMRQTALIALM 633
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ+GC+VPA + I + DRIFTR+G D+L S STFM EM E A +++N + +SL+++D
Sbjct: 634 AQVGCFVPAQSANIGLSDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILD 693
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
E+GR TS+ DG +IAW+ E++ L A T+FA+H L+EL NV ++ + +
Sbjct: 694 EIGRGTSTFDGLSIAWAVVEYISDSKLLGAKTLFATHYHELTELEGKIENVN--NYCIAV 751
Query: 526 RNNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ D F +K G YG+ +A++AG+P VI A+ I ++ +++
Sbjct: 752 KEKGDDIVFLRKIVKGGADK--SYGIQVAKLAGVPDLVINRAKEIVEELSDEDI 803
>gi|330504209|ref|YP_004381078.1| DNA mismatch repair protein MutS [Pseudomonas mendocina NK-01]
gi|328918495|gb|AEB59326.1| DNA mismatch repair protein MutS [Pseudomonas mendocina NK-01]
Length = 855
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 281/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D +
Sbjct: 266 LDGASRRNLELDINL------AGGRDNTLQSVMDRCQTAMASRLLGRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQDAIACLLDGYR-FETLQPQLKEI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + + L + ++ + A + R +ID
Sbjct: 363 --DLARLRDALAALPELQQEMASLDTPHLQQLATTIATYPELAELLARA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKTGYDAELDELQAMSENAGQFLMDLEAREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + P+ +I+ T EL + SA R ++ +
Sbjct: 471 GYFIELPTKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYDE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F + + I+ GRHP
Sbjct: 530 LLEKLIGHLAPLQDSAAALAELDVLSNLAERALNLD----LNRPRFVDEPCMRINQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLDLDDHRRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAAACE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N SERSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASERSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AWS EHL L+A+T+FA+H L+ L P V +H N R+ F ++ GP
Sbjct: 706 LAWSAAEHLARLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVQPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P TVI AR +R+
Sbjct: 766 SQ-SYGLAVAQLAGVPGTVISRAREHLARL 794
>gi|433658629|ref|YP_007276008.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus BB22OP]
gi|432509317|gb|AGB10834.1| DNA mismatch repair protein MutS [Vibrio parahaemolyticus BB22OP]
Length = 853
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 295/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + +YA+ + E++ E +
Sbjct: 367 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQYAAPIDEVCELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L RE + LK+ +N
Sbjct: 413 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNAVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 527 --WEELFDLLMPYLEQMQNLASAVSQMDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 AGRHPVVEQVTSDPFIANPIELSPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 641 AESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 797
>gi|302389749|ref|YP_003825570.1| DNA mismatch repair protein MutS [Thermosediminibacter oceani DSM
16646]
gi|302200377|gb|ADL07947.1| DNA mismatch repair protein MutS [Thermosediminibacter oceani DSM
16646]
Length = 863
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 192/596 (32%), Positives = 309/596 (51%), Gaps = 72/596 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D T RNLE+ + L K+ SL +L T T G R LR + QPL DI
Sbjct: 264 MALDVTCRRNLELTQSLMDG-----KKQGSLLWVLDKTVTSMGGRTLRKWIEQPLIDIIK 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I R D ++EL N FLR+ +E + L + +++T K++ + NA+
Sbjct: 319 IKERQDAVEELYQN--------YFLRQELREQLKNL----YDLERLTGKLVCGNLNAR-- 364
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSV-CENEKYASIRKRIGEVIDED 178
++ +K + P + ++L +S LL +Y + N+ Y + K I++D
Sbjct: 365 -----DLLAIKNTVKHFPKIKELLAGCRSKLLITLYNELDLLNDVYELLEK----AINDD 415
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P ++ ++ IK G D +D R++ + + L K RE + +LK+ +
Sbjct: 416 ------PPIS-VKEGGIIKDGFDSEVDRLRKASTEGKSWIAELERKERERTGIKSLKVGY 468
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ I ++ +P +I+ N T EL A
Sbjct: 469 NKVFGYYIEITKANL-SLVPKDYIRKQTLANGERFITEELKEYESLIMGAE--------- 518
Query: 299 CLEALVD-------AIRED----VSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
E L+D IRED ++ L A+V+ +LD +V S A S+ + Y +P
Sbjct: 519 --EKLLDLEYQIFCKIREDLITKITRLKKSAQVVSVLDALV-SLAEVASS---NNYVKPE 572
Query: 348 FTENGPLAIDGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCL 404
T N + I GRHP++E D FIPN+ I+ + +M+ I+TGPNM+GKSTY++QV L
Sbjct: 573 LTLNDEINIVEGRHPVVELTLKDEMFIPNDTHINCSDSMISIITGPNMAGKSTYMRQVAL 632
Query: 405 IVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSL 464
IV++AQIG +VPA + I +VDRIFTR+G DNL S STFM EM E A ++++ + +SL
Sbjct: 633 IVLMAQIGSFVPAKSAQIGIVDRIFTRIGASDNLASGQSTFMVEMTEVANILKHATPKSL 692
Query: 465 IVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYV 523
+++DE+GR TS+ DG +IAW+ E++ ++KA T+FA+H +++L + VK +F V
Sbjct: 693 LILDEIGRGTSTYDGLSIAWAVIEYIHKNIKAKTLFATHYHEITQLKKL-KGVK--NFKV 749
Query: 524 VIRNNRLDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
+++ D F K P YG+ +A++AGLP +VI A+ I + + + R
Sbjct: 750 MVKERGEDIIFLRKIVPGEADRSYGIEVAKLAGLPKSVILRAQEILKDLEQNDGAR 805
>gi|298157251|gb|EFH98336.1| DNA mismatch repair protein MutS [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 859
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 175/590 (29%), Positives = 291/590 (49%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D ++ L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLEAPHLQQLAQTASTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAG 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVITRA--------KEHLQRLETTSLPHEQ 807
>gi|333897075|ref|YP_004470949.1| DNA mismatch repair protein mutS [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112340|gb|AEF17277.1| DNA mismatch repair protein mutS [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 857
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 172/570 (30%), Positives = 301/570 (52%), Gaps = 42/570 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++RNLEI+ ++ +K +L +L T T G RLL+ L +PL D+E
Sbjct: 264 MLLDNNTIRNLEIVYSINR----DHSKSGTLLSVLDQTVTPMGGRLLKRWLEEPLIDVEK 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
IN RL+ + EL ++ + + L+ + ++++SK++ + NAK
Sbjct: 320 INYRLNSVSELYNDYKGRLDIRDILKG------------IYDLERLSSKLVYQNINAK-- 365
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ +K +++ LP L ++L +S L I+ + + I I + I +D
Sbjct: 366 -----DLLSIKISIERLPKLKQLLDKYKSNYLKEIFSKL---DTLQDIHDLIDKSIKDD- 416
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + ++ IK G D +D RR+ D + NL + +E+ + LK+ +N
Sbjct: 417 -----P-SSNVKEGNIIKDGFDKNIDELRRASIDGKSWIANLESYEKEKTGIKTLKIGYN 470
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ + I +P +I+ N T EL + + A +
Sbjct: 471 KVFGYYIEVSKSYISS-VPENYIRKQTLANAERYITPELKEIEEKILGAETKLVEMEYEI 529
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ + + I+ ++ + + + + +LD++V S A T + Y +P + + I G
Sbjct: 530 FDRIREQIKNEIYRIQMTSRYIAILDVLV-SLATVAET---NNYVKPIVNSSDRIVIKDG 585
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E+I +D FI N+I I + ++I+TGPNM+GKSTY++QV LIV++AQIG +VPA
Sbjct: 586 RHPVIETIMDDSFISNDIEIDDKKPIMIITGPNMAGKSTYMRQVALIVLMAQIGSFVPAS 645
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
++ I VVDRIFTR+G D+L S STFM EM E + ++ + ++ SLI++DE+GR TS+ D
Sbjct: 646 YAEIGVVDRIFTRVGASDDLFSGQSTFMVEMNEVSLILNSATKNSLIILDEVGRGTSTYD 705
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G +IA + E++ +KA T+FA+H L+ L +K + V ++ + F ++
Sbjct: 706 GMSIACAILEYIHDKIKAKTMFATHYHELTNLEDKLDGIKNYNISVEETDDEIIFLRKII 765
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
G YG+ +A++AGLP VI+ A+ I
Sbjct: 766 PGAAD-KSYGIQVAKLAGLPDEVIQNAKKI 794
>gi|388257504|ref|ZP_10134683.1| DNA mismatch repair protein MutS [Cellvibrio sp. BR]
gi|387938671|gb|EIK45223.1| DNA mismatch repair protein MutS [Cellvibrio sp. BR]
Length = 882
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 167/573 (29%), Positives = 283/573 (49%), Gaps = 59/573 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L T + +LF +L T G+RLLR L +PL+D++ +
Sbjct: 269 MDAATRRNLELDINL------TGGDEHTLFSVLNRAATSMGSRLLRRWLNRPLRDLDLLV 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R D + EL N F + + K + +R+L + P+ ++ ++ + +
Sbjct: 323 GRQDAIAELQHN--YAFEIFNGILKRVGDMERILGRLALRSARPRDLSRLLMSIGTYPEL 380
Query: 120 QTLI-----SSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
Q + S + L + P L ++L R++ EN + R G V
Sbjct: 381 QNELAHKNSSQLKNLAQQISTFPDLVELLS-----------RAIIEN---PPVVIRDGGV 426
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
I E G D LD R + + + +L + RE +P L
Sbjct: 427 IAE---------------------GYDAELDDLRNISTNAGQYLLDLETRERERTGIPTL 465
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
K+ +N G+++ + + K P+ +I+ N T EL + SA
Sbjct: 466 KVGYNRVHGYFIELTTAQSE-KAPADYIRRQTLKNAERYITPELKEFEDKALSAQSRALA 524
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
R + E L+D + + L A + LD++ + + +P + +
Sbjct: 525 REKALYEELIDILNVQLVPLQDSAAAVAELDVLATLAERADALG----FCKPELSLRAGI 580
Query: 355 AIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GGRHP++E + + F+PN++ + +M+I+TGPNM GKSTY++Q LI +LA IG
Sbjct: 581 NIIGGRHPVVEQVTSAPFVPNDLEFNPQRHMLIITGPNMGGKSTYMRQAALITLLAHIGS 640
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA +TI +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR
Sbjct: 641 FVPAQKATIGIVDRIFTRIGSADDLAGGRSTFMVEMTETANILHNATERSLVLMDEIGRG 700
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+C +HL ++A+T+FA+H ++ L + +H + + F
Sbjct: 701 TSTFDGLSLAWACAKHLAEKVRAFTLFATHYFEITTLPETVTGIANVHLNATEHKDNIVF 760
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
++++GP YGL +A++AG+P+ V+ A+
Sbjct: 761 LHKVQEGPAS-KSYGLQVAKLAGIPAQVLAEAQ 792
>gi|427711771|ref|YP_007060395.1| DNA mismatch repair protein MutS [Synechococcus sp. PCC 6312]
gi|427375900|gb|AFY59852.1| DNA mismatch repair protein MutS [Synechococcus sp. PCC 6312]
Length = 873
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 188/580 (32%), Positives = 287/580 (49%), Gaps = 54/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+ + + + SL + T T G RLLR LLQPL +I I
Sbjct: 304 LDQQTRRNLELTQTSRDGTF-----QGSLLWAIDRTCTAMGGRLLRRWLLQPLLNIPAIQ 358
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + EL+S L +E R L H + NA+
Sbjct: 359 DRQATIQELISQTHLR-----------QEIHRHLQHIYDLERLAGRAGSGTANAR----- 402
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L+ + D L LA +L AQS L + E E+ D LHA
Sbjct: 403 --DLVALRDSFDTLLKLAPILATAQSSYLTALKTLPPELEQLG------------DKLHA 448
Query: 183 RV---PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ P +A + I+ G + LD R+ + L + RE + +LK+ FN
Sbjct: 449 TLVESPPIALMEGGL-IRPGANSDLDQHRQQLEQDRQWFVTLESHERERTGINSLKVGFN 507
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY-IRTEI 298
G+++SI Q P +I+ N T EL R + + Y + EI
Sbjct: 508 KAAGYHISISRSRNQAP-PPDYIRKQTLTNEERYITAELKEREARLMTLQTDLYNLEYEI 566
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
LE L +A+ S++ +A + +D + I YT P EN L I G
Sbjct: 567 FLE-LRNAVAAQASLIRQIATAVASIDALWGLADVAIYQD----YTCPELVENRELFITG 621
Query: 359 GRHPILESIH--NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E F+PN+ + A+++I+TGPN SGKS YL+QV LI +LAQIG +VP
Sbjct: 622 GRHPVVEQALPVGFFVPNDTHLGGIADLMILTGPNASGKSCYLRQVGLIQLLAQIGSFVP 681
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A S + + DRIFTR+G VD+L STFM EM ETA ++ + + +SL+++DE+GR T++
Sbjct: 682 AQTSKLGICDRIFTRVGAVDDLAMGQSTFMVEMNETANILNHATPKSLVLLDEIGRGTAT 741
Query: 477 SDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN--NRLDFK 533
DG AIAWS E+L ++++A TIFA+H L+ELA++ NV +++ VV++ + + F
Sbjct: 742 FDGLAIAWSVAEYLAMTIQARTIFATHYHELNELASLLSNV--VNYQVVVKELPDEIIFL 799
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
Q++ G YG+ +AGLP +VI+ AR + +I +
Sbjct: 800 HQVQPGGADR-SYGIEAGRLAGLPPSVIQRARQVMQQIEQ 838
>gi|448532901|ref|ZP_21621321.1| DNA mismatch repair protein MutS [Halorubrum hochstenium ATCC
700873]
gi|445706135|gb|ELZ58020.1| DNA mismatch repair protein MutS [Halorubrum hochstenium ATCC
700873]
Length = 935
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 180/596 (30%), Positives = 297/596 (49%), Gaps = 70/596 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+++DAT+ RNLEI E + GT LF + T T G RLLR L +P +D T
Sbjct: 273 VDVDATTQRNLEITETMRGDADGT------LFDTVDHTVTAAGGRLLREWLTRPRRDRGT 326
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD ++ L S ++ R + + +++ S+ + ++
Sbjct: 327 LADRLDAVEALSSA------------ALARDRVREVLDDAYDLERLASRT--TSGSAGAR 372
Query: 121 TLIS------SIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
L+S + L A++ PL A S A R + E+ A++R + E
Sbjct: 373 ELLSVRDTLALLPALADAIEGSPL-------ADSPAAAVFDR--VDRERAAALRAELDEA 423
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLD--IAR----RSFCDTSEAVHNLANKYREE 228
+ ED P A+T +K G D LD I R +S+ D LA + +
Sbjct: 424 LAED------PPKAKTGGGL-LKRGYDDELDELIERHESVKSWLD------GLAEREKRR 470
Query: 229 LKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRN 285
L ++ + N G+Y+ + K + ++P + ++ N+ T EL+ +R
Sbjct: 471 HGLSHVTVDRNKTDGYYIQV-GKSVADQVPEGYREIKTLKNSKRFVTDELSEKEREVLRL 529
Query: 286 KSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTR 345
+ A GE EAL + + E +L + LD + + H +TR
Sbjct: 530 EEARGELEYE---LFEALRERVAERAELLQDAGRAVAELDALASLATHAARRD----WTR 582
Query: 346 PHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405
P TE L ++ GRHP++E DF+PN++ + +IVTGPNMSGKSTY++Q LI
Sbjct: 583 PELTEERRLDVEAGRHPVVEGT-TDFVPNDLRLDPDREFLIVTGPNMSGKSTYMRQAALI 641
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
+LAQ G +VPA + + +VD I+TR+G +D L STFM EM+E + ++ + +E SL+
Sbjct: 642 QLLAQAGSFVPARAAEVGLVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLV 701
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
++DE+GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA P V +H V
Sbjct: 702 ILDEVGRGTATYDGISIAWAATEYLHNEVRARTLFATHYHELTTLADHLPRVANVHVAVD 761
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
R+ + F ++DGP + YG+ +A++AG+P V+ A + R+ +E K +E
Sbjct: 762 ERDGEVTFLRTVRDGPTNR-SYGVHVADLAGVPDPVVSRADEVLDRL--REEKAIE 814
>gi|170723211|ref|YP_001750899.1| DNA mismatch repair protein MutS [Pseudomonas putida W619]
gi|229470267|sp|B1JB25.1|MUTS_PSEPW RecName: Full=DNA mismatch repair protein MutS
gi|169761214|gb|ACA74530.1| DNA mismatch repair protein MutS [Pseudomonas putida W619]
Length = 857
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 176/587 (29%), Positives = 291/587 (49%), Gaps = 50/587 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D++ +
Sbjct: 266 LDGASRRNLELDINL------AGGRDNTLQSVIDRCQTAMASRLLTRWLNRPLRDLKVLQ 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQDSIRCLLDGYR-FEKLQPQLKEI-GDIERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + AS+ +R +ID
Sbjct: 363 --DLARLRDALGALPELQNAMAELEAPHLARLAAITGTYPELASLLERA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKAGYDNELDDLLAISENAGQFLIDLEAREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P +I+ T EL + + SA R ++ +A
Sbjct: 471 GYFIELPTKQAE-QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDA 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ P F + L ID GRHP
Sbjct: 530 LLETLISHLAPLQDSAAALAELDVLSNLAERALNLD----LNCPRFVDEPCLRIDQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV++A IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLGLDNSTRMLIITGPNMGGKSTYMRQTALIVLMAHIGSFVPAASCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
YGL +A++AG+PS VI+ AR + + R+E + L ++Q
Sbjct: 766 SQ-SYGLAVAQLAGVPSPVIQRAR--------EHLGRLETSSLPHEQ 803
>gi|293321554|emb|CAQ52811.2| mutS [Pseudomonas avellanae]
Length = 780
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 172/593 (29%), Positives = 293/593 (49%), Gaps = 55/593 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 184 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLSILL 237
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNA 116
T + C E E L L + + +R+L C + P++ ++ D
Sbjct: 238 ARQTSITCFLERYRFENLQPQLKEI-----GDVERILARICLRNARPREPGARPRD---- 288
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
+ L+ AL ALP L + + D + L + ++ + A + +R
Sbjct: 289 ---------LARLRDALSALPELQQAMNDLDAPHLQQLAQTASTYPELADLLQR------ 333
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
++ P V R +K G D LD + + + + +L + + L +LK+
Sbjct: 334 --AINDNPPAVIR--DGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLSHLKV 389
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N G+++ +P K + + P+ +I+ T EL + SA R
Sbjct: 390 GYNRVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALARE 448
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
++ E L++ + + ++ L A L LD++ N ++ P F + I
Sbjct: 449 KMLYETLLEDLIDHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRI 504
Query: 357 DGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
+ GRHP++E + F+ N++ + ++ M+I+TGPNM GKSTY++Q LIV+LA IG +V
Sbjct: 505 EQGRHPVVEQVLSTPFVANDLALDDSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFV 564
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL+++DE+GR TS
Sbjct: 565 PAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLVDEVGRGTS 624
Query: 476 SSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
+ DG ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 625 TFDGLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVNNVHLNATEHNERIVFLHR 684
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
+ GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 685 VLPGPASQ-SYGLAVAQLAGVPGKVITRA--------KEHLQRLETTSLPHEQ 728
>gi|339640062|ref|ZP_08661506.1| DNA mismatch repair protein MutS [Streptococcus sp. oral taxon 056
str. F0418]
gi|339453331|gb|EGP65946.1| DNA mismatch repair protein MutS [Streptococcus sp. oral taxon 056
str. F0418]
Length = 841
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 184/613 (30%), Positives = 302/613 (49%), Gaps = 69/613 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D + +L++IE T K SLF ++ KT G RLLR+ + PL D +
Sbjct: 250 LQMDYATKTSLDLIENAR-----TGKKHGSLFWLMDEAKTAMGGRLLRSWIQHPLIDKDR 304
Query: 61 INTRLDCLDELMSNEQLFF---GLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
I R D + + + FF LS LR + +R+ F
Sbjct: 305 ITKRQDVVQVFLDS---FFERSDLSDSLRGV-YDIERLASRVSF---------------- 344
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSV-----CENEKYASIRKRIG 172
+T ++ L + L +P + +L++ S L + + EN ++I
Sbjct: 345 -GKTNPKDLLQLASTLSHVPQIRAILENIASPALETLVSKLDAIPELENLISSAISPDAS 403
Query: 173 EVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLP 232
+VI E + I+ G D LD R + + + ++ K R +
Sbjct: 404 QVITEGNI---------------IQSGFDETLDKYRLVMREGTSWIADIEAKERATSGIS 448
Query: 233 NLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKS 287
NLK+ +N + G+Y + + + G +PS F + N+ T ELA L R KS
Sbjct: 449 NLKIDYNKKDGYYFHVTNSQL-GHVPSHFFRKATLKNSERYGTEELARIEGEMLEAREKS 507
Query: 288 AAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
A E I I EA + + L LA+ L +D ++ SFA + + RP
Sbjct: 508 ANLEYEIFMRIREEA-----GKYIKRLQALAQTLATID-VLQSFAVVAENQHL---VRPS 558
Query: 348 FTENGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405
FT N L I+ GRH ++E + +IPN++ + ++ ++TGPNMSGKSTY++Q+ +I
Sbjct: 559 FTANRTLKIEKGRHAVVEKVMGAQSYIPNSVVMDADTDIQLITGPNMSGKSTYMRQLAII 618
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
VI+AQ+G YVPA + + + D IFTR+G D+L S STFM EM E ++ SE SLI
Sbjct: 619 VIMAQMGSYVPAELAVLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQASEHSLI 678
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
+ DELGR T++ DG A+A + E++ KA T+FA+H L+EL+T P ++ LH +
Sbjct: 679 LFDELGRGTATYDGMALAQAIIEYIHDRTKAKTLFATHYHELTELSTSLPRLENLHVATL 738
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCL 584
++ ++ F ++++GP YG+ +A++AGLP ++E A SI + + ++ + +
Sbjct: 739 EKDGQVTFLHKIEEGPAD-KSYGIHVAKIAGLPVDLLERADSILTHLESQDKQVVSQQKA 797
Query: 585 QYKQIQMLYHAAQ 597
+QI L+ A Q
Sbjct: 798 TAEQIS-LFEAPQ 809
>gi|251778099|ref|ZP_04821019.1| DNA mismatch repair protein MutS [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243082414|gb|EES48304.1| DNA mismatch repair protein MutS [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 941
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 179/583 (30%), Positives = 297/583 (50%), Gaps = 50/583 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S RNLE+ E + KK SL ++ + T G R LR + +PL +
Sbjct: 259 MTIDGNSRRNLELTESIRE-----KTKKGSLLWVIDKSATSMGGRTLRKWIDEPLIVKDE 313
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL ++E+ ++ G ++ LR KE + +++ K+ + + NAK
Sbjct: 314 IEKRLSGVEEVFNS----IGFNEDLRSALKE--------IYDIERIVGKISNKNVNAK-- 359
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ LK++LD LP + ++LKD S LL Y ++ E +R + + I ED
Sbjct: 360 -----DLLSLKSSLDKLPCIKELLKDTSSELLKGYYENLDE---LIDVRDLLNDSIKED- 410
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + ++ IK G + L+D R+S E + L N+ RE + +LK+ +N
Sbjct: 411 -----PGLG-IKEGNIIKDGYNNLVDELRQSKLHGKEWIAALENREREFTGIKSLKVGYN 464
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I + +I+ N T EL + + + E I E
Sbjct: 465 KVFGYYIEISKSNYNSIPEGRYIRKQTLANAERFITEELKVMEDK-ILGSEEKLINLEYS 523
Query: 300 LEALV-DAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR-YTRPHFTENGPLAID 357
+ + D I +++S L A ++ LD I T++ ++ Y +P +G + I
Sbjct: 524 IFVEIRDKIEKEISRLKKSARIISDLDGI-----STLALVALENDYIKPEINTDGLIKIT 578
Query: 358 GGRHPILESI--HNDFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E + DF+ NN +++ ++++TGPNM+GKSTY++QV LI ++AQ+G +
Sbjct: 579 DGRHPVVEKVIGKGDFVSNNTALNQTDKELLLITGPNMAGKSTYMRQVALITLMAQMGSF 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I + D+IFTR+G D+L STFM EM E + +++N + SL+++DE+GR T
Sbjct: 639 VPATSANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSNSLVLLDEVGRGT 698
Query: 475 SSSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAWS E++ L+ T+FA+H L +L I P VK V + +
Sbjct: 699 STYDGLSIAWSVIEYITKNKDLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKLKDSVV 758
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
F ++ +G YG+ +A++AGLP VI AR I + K
Sbjct: 759 FLRKIVEGGAD-ESYGIEVAKLAGLPENVINRAREILDDLEGK 800
>gi|339486146|ref|YP_004700674.1| DNA mismatch repair protein MutS [Pseudomonas putida S16]
gi|338836989|gb|AEJ11794.1| DNA mismatch repair protein MutS [Pseudomonas putida S16]
Length = 848
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 180/626 (28%), Positives = 302/626 (48%), Gaps = 50/626 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D++ +
Sbjct: 257 LDGASRRNLELDINL------AGGRDNTLQSVIDRCQTAMASRLLSRWLNRPLRDLKVLQ 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + F L L++ + +R+L + NA+
Sbjct: 311 ARQDSIRCLLDGYR-FEKLQPQLKEI-GDIERILARIGLR------------NARPR--- 353
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + AS+ +R +ID
Sbjct: 354 --DLARLRDALGALPELQNAMAELEAPHLARLAAITGTYPELASLLERA--IIDNP---- 405
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 406 --PAVIRDGGV--LKAGYDNELDELLAISENAGQFLIDLEAREKARTGLANLKVGYNRVH 461
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P +I+ T EL + + SA R ++ +A
Sbjct: 462 GYFIELPTKQAE-QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDA 520
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ P F + L I+ GRHP
Sbjct: 521 LLETLISHLAPLQDSAAALAELDVLSNLAERALNLD----LNCPRFVDEPCLRIEQGRHP 576
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 577 VVEQVLTTPFVANDLGLDNSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 636
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 637 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 696
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 697 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 756
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLIC 601
YGL +A++AG+P+ VI+ AR +R+ + + + K + + H +
Sbjct: 757 SQ-SYGLAVAQLAGVPTAVIQRAREHLARLETTSLPHEQPTAQKAKDVPQVPHQSDLFAS 815
Query: 602 LKYS--------NQDEESIRHALQNL 619
L + DE + R A++ L
Sbjct: 816 LPHPAIEKLGKLQLDEMTPRQAIEML 841
>gi|68475246|ref|XP_718341.1| hypothetical protein CaO19.10111 [Candida albicans SC5314]
gi|68475445|ref|XP_718245.1| hypothetical protein CaO19.2579 [Candida albicans SC5314]
gi|46440004|gb|EAK99315.1| hypothetical protein CaO19.2579 [Candida albicans SC5314]
gi|46440104|gb|EAK99414.1| hypothetical protein CaO19.10111 [Candida albicans SC5314]
Length = 803
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 297/570 (52%), Gaps = 29/570 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +VR+LE+++ L GT+ L+ L T G R+LR ++LQP +
Sbjct: 192 MLIDTCTVRDLELVDSLSET--GTT-----LYSFLNCCLTKMGMRILRTSILQPSTHENS 244
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + + EL+++E + L K + ++V F +P+ + S+ +++N
Sbjct: 245 IILRSESVQELINDEDALISIRSSL-KHTCDLEKVFSTF-LEPRGLLSQEQEINN----- 297
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
IILLKT L ++ K +++ S LL + + + E+E + I E I D
Sbjct: 298 -----IILLKTVLQNTFVIRKSIQNVSSHLLVQV-KQILEHENVQHLLAIINEYIRNDCQ 351
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A Q+ A+K G++GLLD++RR E V L K EEL++ ++ F
Sbjct: 352 WANNSTELANQRANAVKSGVNGLLDVSRRIRETLLEEVSELVAKLSEELEIF-MEYRFEI 410
Query: 241 RQGFYLSIPHKDIQ-GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+GF++ I + LP I VK I C+T+EL + R E
Sbjct: 411 SRGFFIKIKGNNTDINSLPEVLINRVKKRKTIECTTIELMKQSSRYNDIVSEITTLNSTI 470
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ + +I +L +++E + LD++ SFA+ S + D YT P F + + I
Sbjct: 471 IHDMYTSINSYTPILLMVSEAIGTLDLLC-SFAYFTSLQK-DSYTCPEFAK--EVTIMRS 526
Query: 360 RHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPIL +++F+ NN + E + + ++TG NMSGKS YL+Q+ +VI+AQ+GC+VPA
Sbjct: 527 LHPILGGNNSNFVANNYSCNHELSRIHVITGANMSGKSVYLRQIAYLVIMAQMGCFVPAE 586
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
++ +R+ + +++R+ + DN++ N+S+F EM ETA ++ + SLI++DELGR +S +D
Sbjct: 587 YARMRIFNSLYSRISS-DNVDINASSFSKEMSETAVILNDSDGDSLILIDELGRGSSLTD 645
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
GF+I + E L+ +A I +H +++++ V H V N +L+ K+ L
Sbjct: 646 GFSICLAILEDLICKEATVITTTHFRDIAQVLANKSCVVTAHMQTVETNGQLEMKYNLVL 705
Query: 539 GPRHVPHYGLLLAEVAG-LPSTVIETARSI 567
G + YG+ AEV+ LP +IE ++ +
Sbjct: 706 GRNGIVGYGIRFAEVSNLLPQELIEDSKVV 735
>gi|422679967|ref|ZP_16738240.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331009314|gb|EGH89370.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 859
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 175/590 (29%), Positives = 291/590 (49%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D ++ L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLEAPHLQQLAQTASIYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVSNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 807
>gi|344340715|ref|ZP_08771639.1| DNA mismatch repair protein mutS [Thiocapsa marina 5811]
gi|343799396|gb|EGV17346.1| DNA mismatch repair protein mutS [Thiocapsa marina 5811]
Length = 862
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 171/585 (29%), Positives = 279/585 (47%), Gaps = 43/585 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI E L + +L +L T T G+RLLR L +PL+ +
Sbjct: 268 LDAATRRNLEITESL------GGRPEHTLAGVLDCTATAMGSRLLRRWLGRPLRSRSDVQ 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+R + L+ + + L L + +R+L + +
Sbjct: 322 SRHAAIGTLI-DTGVHTDLQTVLAGI-GDLERILSRIALRSARP---------------- 363
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL LP L L LL + + + + +R +
Sbjct: 364 -RDLAALRDALAVLPDLRAPLDGCDDPLLMTLAEAAGTHPDVLDLLRR--------AIIP 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ P + R A G+D LD R + + +L + RE +P LK+ +N
Sbjct: 415 QPPMLIRDGGVIA--SGLDAELDRLRELSSNADRFLLDLETRERERTGIPGLKVGYNRVH 472
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ + ++P +I+ T EL S+ R + E
Sbjct: 473 GYFIELGRSQAD-QVPEDYIRRQTLKGAERYVTPELKRFEDEVLSSRERALAREKALYED 531
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L+ + E ++ L AE + LD++ N + +D ++RPH T+ + I+ GRHP
Sbjct: 532 LLGTLAESIAPLQTSAEAIATLDVLANLAERA---RALD-WSRPHLTDEAIIEIEDGRHP 587
Query: 363 ILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E++ + FI N + + M+++TGPNM GKSTY++Q LIV+LA G YVPA +T
Sbjct: 588 VVETVLDAPFIANGLRLDRRRRMLVITGPNMGGKSTYMRQNALIVLLAYSGSYVPARIAT 647
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +DRIF+R+G D+L STFM EM+ETA ++ N + RSL++MDE+GR TS+ DG +
Sbjct: 648 IGPIDRIFSRIGASDDLAGGRSTFMVEMEETANILNNATARSLVLMDEVGRGTSTFDGLS 707
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AWSC L + + AY +FA+H L+ L YP + +H V R+ F L++GP
Sbjct: 708 LAWSCAVELATRIGAYGLFATHYFELTTLPEEYPGIANVHLDAVEHGERIVFMHALREGP 767
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ 585
+ YGL +A +AG+P+ VI AR + + E + +Q
Sbjct: 768 ANQ-SYGLAVAALAGVPAKVIARARERLRELEAGARRHAERDAVQ 811
>gi|289626001|ref|ZP_06458955.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289651483|ref|ZP_06482826.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422583748|ref|ZP_16658868.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330868575|gb|EGH03284.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 859
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 175/590 (29%), Positives = 290/590 (49%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D ++ L + ++ A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLEAPHLQQLAQTASTYPALADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIR--DGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAG 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVITRA--------KEHLQRLETTSLPHEQ 807
>gi|374336833|ref|YP_005093520.1| Msh-like protein [Oceanimonas sp. GK1]
gi|372986520|gb|AEY02770.1| Msh-like protein [Oceanimonas sp. GK1]
Length = 848
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 183/583 (31%), Positives = 290/583 (49%), Gaps = 56/583 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L + T L +L T T G+RLL+ + QP+ + +
Sbjct: 257 MDAATRRNLELTLNLSGTVENT------LAEVLDRTATPMGSRLLKRWIHQPICNRNELA 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + LM++ L LR+ + +RVL + +++ D+
Sbjct: 311 QRQDMIAALMADGS-HDALHPLLRQV-GDLERVLARLALR----SARPRDLSR------- 357
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ AL A P + VL +A++ LA + + + S + E+++ V+
Sbjct: 358 ------LRAALQAQPDIQTVLAEAEADCLAPLAQQI-------STFPELAELLEVAVVDT 404
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R I+ G + LD R + L + R + LK+ +N
Sbjct: 405 -PPVVIRDGGV--IRDGYNAELDELRELAAGAHRYLEELEARERVATGISTLKVAYNKVH 461
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYIRTE 297
GFY+ + + +P +++ NN EL LN ++K A E +
Sbjct: 462 GFYIDVSRANAH-LVPPHYVRRQTLKNNERYIIPELKEYEDKVLNAQSKGLALEKRL--- 517
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
EAL+D + E ++ L A L LD++ N S Y RP T++ + I+
Sbjct: 518 --YEALLDRLLEHLAPLQQSAAALASLDVLANLAERADSLN----YCRPELTDDEVIDIE 571
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D FI N + +S M+++TGPNM GKSTY++Q LIV++A +G +VP
Sbjct: 572 EGRHPVVEQVMTDPFIANPLALSNERKMLVITGPNMGGKSTYMRQTALIVLMAYMGSFVP 631
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I VDRIFTR+G D+L S STFM EM ETA ++ N S SL++MDE+GR TS+
Sbjct: 632 AQQARIGRVDRIFTRIGASDDLASGRSTFMVEMTETANILNNASRHSLVLMDEIGRGTST 691
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG A+AW+C + L + L AYT+FA+H L+ LA ++P V +H V + + F
Sbjct: 692 YDGLALAWACADALANRLHAYTLFATHYFELTGLAALWPAVANVHLDAVEHGDTIAFMHA 751
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
+++G YGL +A +AG+P V+ AR ++T+ E R
Sbjct: 752 VQEGAASR-SYGLQVAALAGVPKPVLSLAR---QKLTELESGR 790
>gi|302391923|ref|YP_003827743.1| DNA mismatch repair protein MutS [Acetohalobium arabaticum DSM
5501]
gi|302204000|gb|ADL12678.1| DNA mismatch repair protein MutS [Acetohalobium arabaticum DSM
5501]
Length = 893
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 177/605 (29%), Positives = 306/605 (50%), Gaps = 73/605 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DA + RNLE+ + + + K SL +L T T G R L+ L QPL D+E
Sbjct: 270 MTLDANTRRNLELTKTIRDQSY-----KGSLLWVLDQTVTAMGGRKLQKWLEQPLLDVEG 324
Query: 61 INTRLDCLDELMSN----EQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNA 116
IN RLD + EL N E+L L++ + +R++ + NA
Sbjct: 325 INNRLDAVGELKDNIFLKEELKDNLTEVY-----DLERLMSKITYGSA----------NA 369
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
+ +I LKT++ LP + ++L +S L + + + + + I I
Sbjct: 370 R-------DLIALKTSIANLPAIKELLTQFESSKLKSAADKL---DTLEDVHELIESSIK 419
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
E+ P T+ IK G D LD R++ + + + NL + +E + +LK+
Sbjct: 420 EE------PPTTVTEGDI-IKTGYDEELDEFRQAMNEGKDWIANLEKEEKERTGIKSLKV 472
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGE 291
FN G+Y+ + ++ +P + + N+ T EL L KS E
Sbjct: 473 GFNKVHGYYIEVTKANLD-LVPDNYERKQTLSNSERYITPELKEKESKILGAEEKSVELE 531
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
+ TEI + + ++ + +A+++ LD++ + I+ + Y P +
Sbjct: 532 YQLFTEIR-----EKVAQETERVQKVADIVAQLDVLASLAEVAIN----NNYCHPEVNAS 582
Query: 352 GPLAIDGGRHPILESI--HNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
+ I+ GRHP++E + F+PN+ +I + +I+TGPNMSGKSTY++QV L+V++
Sbjct: 583 DVIDIEDGRHPVVEEMLEEESFVPNDSYIDCDQDRFLIITGPNMSGKSTYMRQVALMVLM 642
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
+QIG ++PA + I +VDRIFTR+G D+L + STFM EM E A ++ N ++ SL+++D
Sbjct: 643 SQIGSFIPADEAKIGIVDRIFTRVGASDDLTTGQSTFMVEMNEVANILNNATQNSLVILD 702
Query: 469 ELGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
E+GR TS+ DG +IAW+ E++ ++ A ++FA+H L+EL + P VK ++ V +
Sbjct: 703 EVGRGTSTYDGLSIAWAVTEYISDQSNIGAKSLFATHYHELTELESKLPGVK--NYNVAV 760
Query: 526 RNNRLDFKFQLKDGP-RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCL 584
+ D F K P + YG+ +A+ AG+P +VI+ A + ++++E
Sbjct: 761 KEEGSDITFLRKIVPGKANDSYGIEVAKRAGVPKSVIDRANEV--------LEKLETEID 812
Query: 585 QYKQI 589
Y+QI
Sbjct: 813 NYEQI 817
>gi|422594836|ref|ZP_16669126.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330985143|gb|EGH83246.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 859
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 175/590 (29%), Positives = 291/590 (49%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D ++ L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLEAPHLQQLAQTASIYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVSNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 807
>gi|157374438|ref|YP_001473038.1| DNA mismatch repair protein MutS [Shewanella sediminis HAW-EB3]
gi|189083193|sp|A8FST7.1|MUTS_SHESH RecName: Full=DNA mismatch repair protein MutS
gi|157316812|gb|ABV35910.1| DNA mismatch repair protein MutS [Shewanella sediminis HAW-EB3]
Length = 859
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 179/594 (30%), Positives = 291/594 (48%), Gaps = 57/594 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L + +L +L T T G+R+L+ + +PL++ + I
Sbjct: 271 LDAATRRNLELTVNLQGG------HENTLASVLDNTATPMGSRMLQRWIHEPLRNQQQIE 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+R L E++ + LF L L+ + +R+ + + D A+
Sbjct: 325 SRQSALTEIL-DTNLFETLEPQLKAL-GDVERITARLALRSARPR------DFAR----- 371
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
LK A+ LP + + L + QS L ++ R +GE DE L
Sbjct: 372 ------LKQAISLLPEIQQSLANCQSAHLHHLAR-------------MLGEFPDELELLE 412
Query: 183 RV-----PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
R P + R +K G + LD R ++ + L + +E+ + LK+
Sbjct: 413 RAIVDNPPMLIR--DGGVLKEGYNAELDQWRALSQGATDYLSELEAREKEQTGISTLKVG 470
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N G+Y+ + ++ +P ++ + N EL + S+ G+ +
Sbjct: 471 YNRVHGYYIEVSRRE-SDLVPLSYQRRQTLKNTERYIIAELKEHEEKVLSSQGKALALEK 529
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D I + L L A+ LD ++N+FA T Y+ P ++ + I+
Sbjct: 530 QLWEQLFDQILPKLHDLQLFAQGAAELD-VINNFAERAETL---NYSCPTLSQKSGIHIE 585
Query: 358 GGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + FI N + ++ A M+IVTGPNM GKSTY++QV LI ++ IGCYVP
Sbjct: 586 GGRHPVVEQVSQTPFIANPVTLNPARKMLIVTGPNMGGKSTYMRQVALITLMTHIGCYVP 645
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I VDRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 646 AQSAVIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATTESLVLMDEIGRGTST 705
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AWS E+L ++A T+FA+H L++L + NV+ +H + + + F
Sbjct: 706 YDGLSLAWSAAEYLAQKIEAMTLFATHYFELTQLPELISNVENVHLDAIEHGDTIVFMHA 765
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR----SITSRITKKEVKRMEINCLQ 585
+++G YGL +A +AG+P VI A+ + SR T V M + Q
Sbjct: 766 VQEGAAS-KSYGLQVAALAGVPGKVITAAKHKLHHLESRDTNSAVDSMTTSNQQ 818
>gi|390934967|ref|YP_006392472.1| DNA mismatch repair protein mutS [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570468|gb|AFK86873.1| DNA mismatch repair protein mutS [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 857
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 175/570 (30%), Positives = 300/570 (52%), Gaps = 42/570 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++RNLEII ++ +K +L +L T T G RLL+ L +PL D+E
Sbjct: 264 MLLDNNTIRNLEIIYSINR----DHSKSGTLLSVLDQTVTPMGGRLLKRWLEEPLIDVEK 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
IN RLD + EL ++ + G S R + + ++++SK++ + NAK
Sbjct: 320 INYRLDSVSELYND---YKGRSDI---------RDILKGIYDLERLSSKLVYQNINAK-- 365
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ +K +++ LP L ++L S L I+ + + I I + I +D
Sbjct: 366 -----DLLSIKISIERLPKLKQLLNKYNSNYLKEIFTKL---DTLQDIHDLIDKSIKDD- 416
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + ++ IK G D +D RR+ D + NL +E+ + LK+ +N
Sbjct: 417 -----P-SSNVKEGNIIKDGFDKNIDELRRASIDGKSWIANLEAYEKEKTGIKTLKIGYN 470
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ + I +P +I+ N T EL + + A +
Sbjct: 471 KVFGYYIEVSKSYISS-VPENYIRKQTLANAERYITPELKDIEEKILGAETKLVELEYEI 529
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+++ + I+ ++ + + + + +LD++V S A T + Y +P + + I G
Sbjct: 530 FDSIREQIKNEIYRIQMTSRHIAILDVLV-SLATVAET---NNYVKPVVNGSDRIVIKDG 585
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E+I +D FI N+I I ++I+TGPNM+GKSTY++QV LIV++AQIG +VPA
Sbjct: 586 RHPVIETIMDDSFISNDIEIDGKKPIMIITGPNMAGKSTYMRQVALIVLMAQIGSFVPAS 645
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
++ I VVDRIFTR+G D+L S STFM EM E + ++ + ++ SLI++DE+GR TS+ D
Sbjct: 646 YAEIGVVDRIFTRVGASDDLFSGQSTFMVEMNEVSLILNSATKNSLIILDEVGRGTSTYD 705
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G +IA + E++ +KA T+FA+H L+ L +K + V ++ + F ++
Sbjct: 706 GMSIACAILEYIHDKIKAKTMFATHYHELTNLEDKLDGIKNYNISVEETDDEIIFLRKII 765
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
G YG+ +A++AGLP V++ A+ I
Sbjct: 766 PGAAD-KSYGIQVAKLAGLPDEVVQNAKKI 794
>gi|284108785|ref|ZP_06386450.1| DNA mismatch repair protein [Candidatus Poribacteria sp. WGA-A3]
gi|283829859|gb|EFC34150.1| DNA mismatch repair protein [Candidatus Poribacteria sp. WGA-A3]
Length = 874
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 176/597 (29%), Positives = 312/597 (52%), Gaps = 52/597 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M++DA ++RNLE+++ L+ + +L +L T T G+RLLR +++PL D E+
Sbjct: 275 MHLDAMTMRNLELVQTLNP-----DQEHATLLSILDQTVTAMGSRLLRQWVVRPLIDNES 329
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ + + N +L + FL+ + +R+ T+ DV K+S
Sbjct: 330 IQRRLNAVSTFLDNLKLRLHVRSFLKDL-HDLERLSSRIVIG----TATPRDVLRLKESL 384
Query: 121 TLISSIILLKTALDALPLLAKVLK--DAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
T++ ++ L + A PLL +L+ D S + A I ED
Sbjct: 385 TILPKLVQLFDGI-ADPLLNSLLQRWDVLSDVTALI----------------------ED 421
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+ P + F + G+D ++D R + + + +L + RE+ + +LK+ +
Sbjct: 422 SIDPNAPASVKEGPIF--QNGVDPVIDELRTMSRNGVQWLTDLEQREREQSGIDSLKIKY 479
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y + ++ ++P F + N +T +L + + S A E R E
Sbjct: 480 NQVFGYYFEVTKANL-SRVPEYFRRKQTLVNAERYTTQDLEGIEAQ-LSGANEKLRRAEQ 537
Query: 299 -CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
+ ++ + V + +A+ + L+D++ N FA + +RY +P + G + I
Sbjct: 538 ERFQTMLQTLSGHVFRIQKMAKHVALMDVLSN-FAEVAAR---NRYVKPDMHDGGIICIK 593
Query: 358 GGRHPILES--IHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E + FIPN+ ++ +A ++++TGPNM+GKST+L+Q LIV++A +GC+
Sbjct: 594 NGRHPVVEQFDLPEGFIPNDSYLDFDAHRLLLLTGPNMAGKSTFLRQTGLIVLMAHMGCF 653
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I V+DR+FTR+G DNL STFM EM ETA +++ + RSLI++DE+GR T
Sbjct: 654 VPASEAKIGVIDRLFTRVGASDNLALGLSTFMVEMLETAKILRGATSRSLILLDEIGRGT 713
Query: 475 SSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG ++AW+ EH+ L A T+FA+H ++EL T V+ L V + +
Sbjct: 714 STYDGLSLAWAIAEHIQDRRILGARTLFATHYHEMTELETFREGVQNLTVAVKEEKDDVI 773
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
F ++ G + YG+ + ++AGLPST+I A+ + +++ ++ N + Y+Q
Sbjct: 774 FLRKITQG-KATRSYGIHVGKLAGLPSTLIARAQEVLAQLEQETASESRSNRI-YQQ 828
>gi|168214981|ref|ZP_02640606.1| DNA mismatch repair protein MutS [Clostridium perfringens CPE str.
F4969]
gi|170713592|gb|EDT25774.1| DNA mismatch repair protein MutS [Clostridium perfringens CPE str.
F4969]
Length = 909
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 174/579 (30%), Positives = 305/579 (52%), Gaps = 48/579 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL N + ++ + I + + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNL---DDLRDIYELLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G + +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNM+GKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTYMRQVSIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
++ +G YG+ +A++AG+P VI A+ I ++
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDEVINRAKEILEKL 799
>gi|312130476|ref|YP_003997816.1| DNA mismatch repair protein muts [Leadbetterella byssophila DSM
17132]
gi|311907022|gb|ADQ17463.1| DNA mismatch repair protein MutS [Leadbetterella byssophila DSM
17132]
Length = 864
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 189/594 (31%), Positives = 299/594 (50%), Gaps = 74/594 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++RNLE++ H L +L T T G RLLR L+ PLK+ I
Sbjct: 266 LDRFTIRNLELLFSPHEG-------GVPLIDILDQTVTPMGARLLRKWLVLPLKNKAQIE 318
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL+ + ++Q+ L Q L+ + +R++ KV + ++ + +
Sbjct: 319 ERLNTVQYFAGDDQVLQNLIQVLKPI-GDLERLVS-------KVAVRRINPREMVQLKKA 370
Query: 123 ISSIILLKTALDALPLLAKV---LKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ I LK L P + K+ L D + FL+ I R + ++
Sbjct: 371 LAQIEPLKELLVGHPSMEKLTGQLNDCK-FLVEKIERELRDD------------------ 411
Query: 180 LHARVPFVARTQ--QCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
A TQ Q IK G+D LD + + + ++ N+ E +P+LK+
Sbjct: 412 --------APTQMNQGGMIKTGVDAPLDELHKIAFSGKDYLVDIQNRESERTGIPSLKIA 463
Query: 238 FNNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAG 290
+N G+YL + HKD K+P +I+ N T EL L +K
Sbjct: 464 YNKVFGYYLEVSNAHKD---KVPQEWIRKQTLVNAERYITEELKVYEEQILTAESKINEI 520
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E I E+ L A E V+V+ A V+ LD ++ SFA ++ K + Y RP TE
Sbjct: 521 EFRIFNELVLTAA-----EYVNVIQENARVISNLDALL-SFAR-VALK--NGYARPVITE 571
Query: 351 NGPLAIDGGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIV 406
L I GGRHP++E ++PN++++ E ++I+TGPNM+GKS L+Q LIV
Sbjct: 572 EKRLDIKGGRHPVIEQQLPTGESYVPNDLYLDDEEQQIIIITGPNMAGKSALLRQTALIV 631
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQIG +VPA + + +VD+IFTR+G DNL STFM EM ETA ++ N+ +RSL++
Sbjct: 632 LMAQIGSFVPAASAEVGIVDKIFTRVGANDNLSRGESTFMVEMTETASILNNLGDRSLVI 691
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAY---TIFASHMENLSELATIYPNVKILHFYV 523
MDE+GR TS+ DG +IAWS E+L + K T+FA+H L+ L+ +P +K + V
Sbjct: 692 MDEIGRGTSTYDGVSIAWSIAEYLHNHKKQRPRTLFATHYHELNNLSNDFPRIKNFNVAV 751
Query: 524 VIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
N ++ F +LK+G +G+ +A++AG+P +V+ A I + K E K
Sbjct: 752 KEMNGKVVFLRKLKEGGSE-HSFGIHVAQLAGMPQSVVLRANEILQELEKSEAK 804
>gi|343506708|ref|ZP_08744178.1| DNA mismatch repair protein MutS [Vibrio ichthyoenteri ATCC 700023]
gi|342801811|gb|EGU37267.1| DNA mismatch repair protein MutS [Vibrio ichthyoenteri ATCC 700023]
Length = 855
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 177/568 (31%), Positives = 278/568 (48%), Gaps = 47/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI L L T L +L T T G+R+L+ L QP++ +T+N
Sbjct: 266 LDAATRRNLEITHNLSGGLTNT------LAEVLDKTATPMGSRMLKRWLHQPMRCADTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ + LF L L++ + +R+L + +
Sbjct: 320 QRLDAISEI-KDLTLFGDLLPVLKQI-GDIERILARLALRSARP---------------- 361
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP LA V+ + LA K A I +V D E +
Sbjct: 362 -RDLARLRHAMQQLPELASVVSELNQPYLA----------KLAQYAAPIDDVCDLLERAV 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + I G LD R +E + L + RE+ + LK+ +N
Sbjct: 411 KENPPVVIR--EGGVIASGYSAELDEWRDLADGATEYLDKLEREEREQHGIETLKVGYNA 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
GF++ + + +P+ +++ N EL + S+ + +
Sbjct: 469 VHGFFIQV-SRGQSHLVPAHYVRRQTLKNAERYIIPELKEHEDKVLSSKSKALSIEKKLW 527
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L D + + L LA + LD++ N S Y RP T+ + I GR
Sbjct: 528 EELFDLLMPHLEQLQNLASAVSQLDVLQNLAERADSLD----YCRPTLTKEPGINILAGR 583
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + ++ FI N + ++ + M+IVTGPNM GKSTY++Q LI ++A IG YVPA
Sbjct: 584 HPVVEQVMDEPFIANPVALNPSRKMLIVTGPNMGGKSTYMRQTALIALMAHIGSYVPAES 643
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ I ++DRIFTR+G D+L S STFM EM ETA ++ N +ERSL++MDE+GR TS+ DG
Sbjct: 644 AQIGLIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATERSLVLMDEIGRGTSTYDG 703
Query: 480 FAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
++AW+ E L + A T+FA+H L+EL P++ +H V + + F +++
Sbjct: 704 LSLAWASAEWLAKQIGALTLFATHYFELTELPNQMPHLANVHLDAVEHGDSIAFMHAVQE 763
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARS 566
G YGL +A +AG+P VI+ AR+
Sbjct: 764 GAAS-KSYGLAVAGLAGVPKAVIKQARA 790
>gi|18310137|ref|NP_562071.1| DNA mismatch repair protein MutS [Clostridium perfringens str. 13]
gi|44888232|sp|Q8XL87.1|MUTS_CLOPE RecName: Full=DNA mismatch repair protein MutS
gi|18144816|dbj|BAB80861.1| DNA mismatch repair protein [Clostridium perfringens str. 13]
Length = 909
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 174/579 (30%), Positives = 305/579 (52%), Gaps = 48/579 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL N + ++ + I + + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLRNYHHNL---DDLRDIYELLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G + +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNM+GKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
++ +G YG+ +A++AG+P VI A+ I ++
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDDVINRAKEILEKL 799
>gi|407696956|ref|YP_006821744.1| DNA mismatch repair protein mutS [Alcanivorax dieselolei B5]
gi|407254294|gb|AFT71401.1| DNA mismatch repair protein mutS [Alcanivorax dieselolei B5]
Length = 851
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 169/572 (29%), Positives = 280/572 (48%), Gaps = 61/572 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L ++ SL +L T T G RLL+ + QPL+D +N
Sbjct: 267 MDAATRRNLELTKTLDG------REQHSLAWVLDNTTTAMGARLLKRWVHQPLRDRAVLN 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R D +D L + F L Q L + + +R+L + P+ +T
Sbjct: 321 GRQDRIDALRDGWR-FEALRQVLDRI-GDMERILGRVALRSARPRDLTR----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ +L+ALP L L ++ +F A +R+G ++
Sbjct: 368 ---------LRASLEALPALHAALPESNAF---------------AEAHERLGAFPEQCE 403
Query: 180 LHARV-----PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
L R P + R A G LD R + + ++ + RE L
Sbjct: 404 LLTRAVIENPPMLIRDGGVIAP--GYSEDLDELRAISENAGAVLVDIEKRERERTGFATL 461
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
++ +N G+Y+ + ++ + + P + + N T EL + + SA+ +
Sbjct: 462 RVKYNKVHGYYIELSRREAE-QAPVDYQRRQTLKNAERFITPELKTFEDKALSASSKALT 520
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
+ EAL++ + + L + A + LD++ + + RP E L
Sbjct: 521 LEKRLYEALIETVAAHLGPLQVCASAVAELDVLATLAERAEALG----WVRPQLLETPLL 576
Query: 355 AIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GRHP++E + + F+PN++ + + MV++TGPNM GKSTY++Q LI +LA IG
Sbjct: 577 EIVDGRHPVVEQVLEEAFVPNSLHLDDRRRMVVITGPNMGGKSTYMRQTALIALLAHIGS 636
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
VPA + I +DRIFTR+G+ D+L STFM EM ETA ++ N + SL++MDE+GR
Sbjct: 637 AVPAASARIGPLDRIFTRIGSSDDLAGGRSTFMVEMSETANILNNATPESLVLMDEIGRG 696
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+ EHL + L+A+T+FA+H L++L V H +NR+ F
Sbjct: 697 TSTFDGLSLAWAAAEHLATRLRAFTLFATHYFELTQLPETLDTVYNAHLTASEHDNRIVF 756
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETA 564
++++GP YGL +A++AG+P+ VI+ A
Sbjct: 757 LHRVQEGPASR-SYGLQVAQLAGVPAPVIQRA 787
>gi|348029913|ref|YP_004872599.1| DNA mismatch repair protein(MutS) [Glaciecola nitratireducens
FR1064]
gi|347947256|gb|AEP30606.1| DNA mismatch repair protein(MutS) [Glaciecola nitratireducens
FR1064]
Length = 893
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 176/580 (30%), Positives = 288/580 (49%), Gaps = 48/580 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + +NLE+ L + + + +LF +L T T G+RLL+ L +P+ D +
Sbjct: 275 MDAATQQNLELTRTL------SGSSENTLFAVLNNTSTAMGSRLLQRWLHRPITDKNKLL 328
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + ++ S+ + L FL++ + +R+L + +++ D
Sbjct: 329 FRQNTIADVQSHN--YSVLQDFLKQI-GDVERILARMALR----SARPRDFSR------- 374
Query: 123 ISSIILLKTALDALPLLAKVLKD----AQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
LK AL+ LP L + L+D +Q + + E K A + +ID
Sbjct: 375 ------LKEALNMLPDLQQWLRDCIPSSQHDTFSMFSADIGEYPKVAELLN--SAIIDNP 426
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P V R A G LD R ++ + L K RE +P LK+ +
Sbjct: 427 ------PVVLRDGGVIA--EGYSAELDELRALSKGATDFLDRLEVKERERTGIPTLKVNY 478
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N GF++ + + K+P +++ NN EL + + ++ + +
Sbjct: 479 NRVHGFFIEVSRAN-SDKIPPEYVRRQTLKNNERYIIPELKAHEDKVLTSQSKALALEKK 537
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL D I ++ L A L LD++ N FA T + R P + +
Sbjct: 538 LYEALFDDIAPELPNLMQSAVALATLDVLTN-FAERADTLNLHR---PELVDENIINYSE 593
Query: 359 GRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRH ++E + N FI N +F+ + M+++TGPNM GKSTY++Q LIV+LA +GCYVPA
Sbjct: 594 GRHLVVEEVMNSPFIANPLFMDDNTRMLMITGPNMGGKSTYMRQTALIVLLAYVGCYVPA 653
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 654 QDVKIGPIDRIFTRIGAADDLASGRSTFMVEMTETANILNNATANSLVLMDEIGRGTSTY 713
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AWSC + L L A+T+FA+H L+ L+ P + +H V N+ + F Q+
Sbjct: 714 DGLSLAWSCAQWLSEKLHAFTLFATHYFELTSLSDSIPTITNVHLSAVEHNDEIRFMHQV 773
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ G YGL +A++AG+P VI++A+ + + + +V
Sbjct: 774 QQGAAS-KSYGLQVAKLAGVPKAVIDSAKRKLAELERLDV 812
>gi|401564533|ref|ZP_10805420.1| DNA mismatch repair protein MutS [Selenomonas sp. FOBRC6]
gi|400188743|gb|EJO22885.1| DNA mismatch repair protein MutS [Selenomonas sp. FOBRC6]
Length = 863
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 182/588 (30%), Positives = 288/588 (48%), Gaps = 61/588 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++RNLEI L KK +LF +L T+T GTRLLRA L PL
Sbjct: 262 MQLDTYTLRNLEITRSLRDG-----GKKNTLFDVLDFTRTPMGTRLLRAWLEHPLLTPHR 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD + EL+ N L L + LR + +R+L + NA+
Sbjct: 317 IEARLDAVAELVENAGLRGTLREQLRSV-YDFERLLTRIETQTA----------NAR--- 362
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE-VIDEDV 179
++ L+ +L ALP + L S LL R+ + + ++R + ++DE
Sbjct: 363 ----DLVALRVSLTALPAVRTALGSTASRLL---MRAASSIQTFDALRDSLERAIVDEPG 415
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
L R + I+ G D LD R D+ + + + R + LK+ +N
Sbjct: 416 LSVR--------EGGIIRAGYDAALDELRAFSHDSKSLLQEMEERERTRTGIKTLKIGYN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYI 294
G+Y+ + H + ++P +I+ N T EL L K A E +I
Sbjct: 468 KVFGYYIEVRHSG-RDQVPDDYIRKQTLANTERFITEELKDFEAKILGAEEKITALEYHI 526
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
T L D ++ + + +A + +D ++ S A ++ RY RP T NG +
Sbjct: 527 FT-----TLRDEVKAQLVPIQNVARAIARVD-VLQSLAEAAASY---RYVRPKVTANGTI 577
Query: 355 AIDGGRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQI 411
I GRHP++E I F+PN+ +S +++TGPNM+GKSTY++QV L+ ++AQ+
Sbjct: 578 LIRDGRHPLVERILEREIFVPNDTELSHGGTETMLITGPNMAGKSTYMRQVALLTLMAQV 637
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + I VDRIFTR+G D+L S STFM EM E A +++ + SL+++DE+G
Sbjct: 638 GSFVPARTAEIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLVILDEIG 697
Query: 472 RATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS+ DG +IA + EH+ + A T+FA+H L+E+ N I ++ + +R
Sbjct: 698 RGTSTFDGMSIARAVVEHIDTRIHAKTLFATHYHELTEM----ENEHIRNYCIAVREKGK 753
Query: 531 DFKF--QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ F ++ G YG+ +A +AGLP+ V A I + +KE
Sbjct: 754 NVAFLRRIVAGAAD-KSYGIHVARLAGLPAKVTARAEEILHALEQKEA 800
>gi|334128878|ref|ZP_08502756.1| DNA mismatch repair protein MutS [Centipeda periodontii DSM 2778]
gi|333386120|gb|EGK57340.1| DNA mismatch repair protein MutS [Centipeda periodontii DSM 2778]
Length = 863
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 179/588 (30%), Positives = 293/588 (49%), Gaps = 59/588 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++RNLEI L KK +LF +L T+T GTRLL++ L PL
Sbjct: 262 MQLDTYTLRNLEITRSLRDG-----GKKNTLFDVLDFTRTPMGTRLLKSWLEHPLLVPHR 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RLD + EL+ L L LR + +R+L + NA+
Sbjct: 317 IDARLDAVAELVEKSPLRASLRDHLRSV-YDFERLLTRIETQTA----------NAR--- 362
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ L+ +L ALP + + L A+S LL +Y ++ ++ +R ++DE L
Sbjct: 363 ----DLVALRVSLAALPAIRETLSTAESNLLTRVYAAIQTFDELRDTLERA--IVDEPGL 416
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
R + RT G D LD D+ + + + R + LK+ +N
Sbjct: 417 SVREGGIIRT--------GYDAALDELHAFSHDSKTLLQEMEERERTRTGIKTLKIGYNK 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYIR 295
G+Y+ + H + ++P +I+ N T EL L K A E +I
Sbjct: 469 VFGYYIEVRHSG-RDQVPDDYIRKQTLANTERFITEELKVFEAKILGAEEKITALEYHIF 527
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
T+ L + ++ + + +A + +D ++ S A ++ RY RP T G +
Sbjct: 528 TQ-----LREQVKAQLVPIQNVARAIARVD-VLQSLAEAAASY---RYVRPRVTAGGAIL 578
Query: 356 IDGGRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
I GRHP++E I F+PN+ IS +++TGPNM+GKSTY++QV L+ ++AQ+G
Sbjct: 579 IRDGRHPLVERILQREVFVPNDTDISHGGTETMLITGPNMAGKSTYMRQVALLTLMAQVG 638
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I VDRIFTR+G D+L S STFM EM E A +++ + SL+++DE+GR
Sbjct: 639 SFVPARTAEIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLVILDEIGR 698
Query: 473 ATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNR 529
TS+ DG +IA + EH+ + A T+FA+H L+++ N +I ++ + +R +
Sbjct: 699 GTSTFDGMSIARAVVEHIDTRIHAKTLFATHYHELTDM----ENERIRNYCIAVREKGKK 754
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
+ F ++ G YG+ +A +AGLP+ V E A I + +KE +
Sbjct: 755 VAFLRRIVAGAAD-KSYGIHVARLAGLPAKVTERAEEILHALEQKEAQ 801
>gi|190411093|gb|ACE78301.1| truncated MutS [Vibrio parahaemolyticus]
Length = 848
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 179/578 (30%), Positives = 295/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + ++A+ + E++ E +
Sbjct: 367 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQFAAPIDEVCELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L RE + LK+ +N
Sbjct: 413 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNAVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 527 --WEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 AGRHPVVEQVTSDPFIANPIELSPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 641 AESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 797
>gi|125973295|ref|YP_001037205.1| DNA mismatch repair protein MutS [Clostridium thermocellum ATCC
27405]
gi|256003775|ref|ZP_05428763.1| DNA mismatch repair protein MutS [Clostridium thermocellum DSM
2360]
gi|281417499|ref|ZP_06248519.1| DNA mismatch repair protein MutS [Clostridium thermocellum JW20]
gi|385778793|ref|YP_005687958.1| DNA mismatch repair protein MutS [Clostridium thermocellum DSM
1313]
gi|419723190|ref|ZP_14250325.1| DNA mismatch repair protein MutS [Clostridium thermocellum AD2]
gi|419724906|ref|ZP_14251961.1| DNA mismatch repair protein MutS [Clostridium thermocellum YS]
gi|171769986|sp|A3DDI3.1|MUTS_CLOTH RecName: Full=DNA mismatch repair protein MutS
gi|125713520|gb|ABN52012.1| DNA mismatch repair protein MutS [Clostridium thermocellum ATCC
27405]
gi|255992336|gb|EEU02430.1| DNA mismatch repair protein MutS [Clostridium thermocellum DSM
2360]
gi|281408901|gb|EFB39159.1| DNA mismatch repair protein MutS [Clostridium thermocellum JW20]
gi|316940473|gb|ADU74507.1| DNA mismatch repair protein MutS [Clostridium thermocellum DSM
1313]
gi|380771526|gb|EIC05391.1| DNA mismatch repair protein MutS [Clostridium thermocellum YS]
gi|380780957|gb|EIC10620.1| DNA mismatch repair protein MutS [Clostridium thermocellum AD2]
Length = 870
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 187/615 (30%), Positives = 314/615 (51%), Gaps = 63/615 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLE+ E + N+K SL +L T T G R LR + QPL ++
Sbjct: 267 MILDMATRRNLELTETMRE-----KNRKGSLLWVLDRTMTSMGGRTLRKWIEQPLINLHD 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETD-RVLCHFCFKPKKVTSKVLDVDNAKKS 119
I RLD ++E F +F ++ R L + +++ +KV + +
Sbjct: 322 IKDRLDAVNE-------------FKERFMIRSEVRELLRAVYDIERLMTKV--ILGSANC 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ LIS +K ++ +P + ++L+D ++ L Y + + E+ID+ +
Sbjct: 367 RDLIS----IKHSIGQVPYIKELLRDLKADLNVLSYNEL-------DTLTDVYEIIDKAI 415
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ P VA ++ IK G + +D R + D + + +L +K RE + NLK+ FN
Sbjct: 416 VDD--PPVA-VKEGGIIKEGFNEEVDRLRSASKDGKKWIAHLESKERERTGIKNLKVGFN 472
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ + K ++P +I+ N T EL + N E + E+
Sbjct: 473 KVFGYYIEVT-KSYYSQVPDDYIRKQTLANCERYITPELKE--IENTVLGAEDRL-VELE 528
Query: 300 LEALVDA---IREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ VD + ++++ L A L +D++ S A + YT P T++ + I
Sbjct: 529 YQIFVDVRNKVAKEINRLKTTARSLARIDVLC-SLAEVADRES---YTMPEVTDDDKIEI 584
Query: 357 DGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGC 413
GRHP++E I F+PN+ ++ N + I+TGPNM+GKSTY++QV LIV++AQIG
Sbjct: 585 KDGRHPVVEKIIGQEAFVPNDTYLDMDENQIAIITGPNMAGKSTYMRQVALIVLMAQIGS 644
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +VDRIFTR+G D+L + STFM EM E A ++ N + +SL+V+DE+GR
Sbjct: 645 FVPAKSAKIGIVDRIFTRVGASDDLAAGQSTFMVEMSEVANILGNATSKSLLVLDEIGRG 704
Query: 474 TSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG +IAW+ E++ + A T+FA+H L+EL +K ++ + + D
Sbjct: 705 TSTYDGLSIAWAVIEYIGEKIGARTLFATHYHELTELEERIEGIK--NYCISVEEKGEDI 762
Query: 533 KFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK-- 587
F L+ G + YG+ +A +AG+P VI A+ I ++ ++ R E + K
Sbjct: 763 IFLRKILRGGADN--SYGVQVARLAGIPDPVIHRAKEILKKLEDADITRKEKRITRRKQP 820
Query: 588 ---QIQML-YHAAQR 598
QI + ++AAQR
Sbjct: 821 IEGQIDVFTFNAAQR 835
>gi|34499116|ref|NP_903331.1| DNA mismatch repair protein MutS [Chromobacterium violaceum ATCC
12472]
gi|44888170|sp|Q7NRW7.1|MUTS_CHRVO RecName: Full=DNA mismatch repair protein MutS
gi|34104967|gb|AAQ61323.1| DNA mismatch repair protein [Chromobacterium violaceum ATCC 12472]
Length = 873
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 187/628 (29%), Positives = 299/628 (47%), Gaps = 56/628 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ E + +L +L T T G+RLL L P+++
Sbjct: 289 IRMDAATRRNLELTETIRG------EASPTLASLLDTCATSMGSRLLGHWLHHPMRNHGK 342
Query: 61 INTRLDCLDELMSNEQ-LFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
+ R + L+S Q + L Q + +R+ + +++ D+ + S
Sbjct: 343 LARRHGAVRALLSRYQDVHAELDQV-----SDIERITSRVALR----SARPRDLSALRDS 393
Query: 120 QTLISSIILLKTALDA--LPLLAKVL---KDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
T +S + L +LD+ L LA VL Q L A I + E + R G V
Sbjct: 394 LTALSGVKALAASLDSELLNELAGVLPTESPVQKMLAAAI---LPEPATFL----RDGGV 446
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
I++ G +LD R D + + L + +E + L
Sbjct: 447 IND---------------------GFSPVLDELRAIQTDCGDFLLKLEAREKERTGITTL 485
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
K+ FN GFY+ + K K+P + + N T EL + +A
Sbjct: 486 KVEFNRVHGFYIEV-SKAQSDKVPDDYRRRQTLKNAERYITPELKEFEDKALTAQDRALA 544
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
+ EAL+D + ++ L L+A+ + LD ++++FA + + Y P F L
Sbjct: 545 LEKQLYEALLDQLAPHIAELKLIAQAVAALD-VLSAFAQRAA---IGNYAEPQFVPEPKL 600
Query: 355 AIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E+ FI N+ +S ++++TGPNM GKSTY++Q LI +LA +G +
Sbjct: 601 DIVAGRHPVVEAEVERFIANDTRLSAERKLLLITGPNMGGKSTYMRQNALITLLAHVGSF 660
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L STFM EM ETA ++ N SE SL++MDE+GR T
Sbjct: 661 VPADSAVIGPIDRIFTRIGASDDLAGGRSTFMVEMTETANILNNASEHSLVLMDEVGRGT 720
Query: 475 SSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG A+AW+ L+ +AYT+FA+H L+ LA YP V +H V +R+ F
Sbjct: 721 STFDGLALAWAIARALIEKNRAYTLFATHYFELTTLAGEYPAVANVHLSAVEHKDRIVFL 780
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLY 593
++DGP YGL +A++AG+P+ VI AR + + + R++ +
Sbjct: 781 HHVEDGPASQ-SYGLAVAQLAGVPAKVIRDARRHLAELENQSAARVQPDLFSAPAPASEP 839
Query: 594 HAAQRLICLKYSNQDEESIRHALQNLKE 621
+ + L+ + D S R AL+ L E
Sbjct: 840 ELSPAMDRLQEIDPDVLSPRQALEILYE 867
>gi|434388178|ref|YP_007098789.1| DNA mismatch repair protein MutS [Chamaesiphon minutus PCC 6605]
gi|428019168|gb|AFY95262.1| DNA mismatch repair protein MutS [Chamaesiphon minutus PCC 6605]
Length = 867
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 185/587 (31%), Positives = 290/587 (49%), Gaps = 63/587 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLEI + + ++ + SL L T T G R LR +LQPL D+ +I
Sbjct: 311 LDHQSRRNLEITQTVRD-----NHFQGSLLWALDKTCTAMGGRALRRWVLQPLLDLHSIT 365
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + EL+ + L L Q L++ + +++T K A +
Sbjct: 366 KRQDTIQELVEHTFLRQDLQQLLKQI------------YDIERLTGK------AASGRAN 407
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L + LP LA + +S L ++ E E +K + +++ H
Sbjct: 408 ARDLVALADSFLKLPELANIASQGKSPFLKILHHVPAELEALG--QKIVAHLVEHPPQHL 465
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ + I+ GID LD R S + + + NL R+ + NLK+ FN
Sbjct: 466 K--------EGGLIRSGIDPQLDELRASAAEDHQWIANLEVIERDRTGIANLKVGFNKTF 517
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC-YIRTEICLE 301
G+Y+SI ++P +I+ N T EL VR +A + I EI LE
Sbjct: 518 GYYISISRLKAD-QVPGDYIRKQTLTNEERYITPELKEREVRILTAQDDLNRIEHEIFLE 576
Query: 302 --ALVDAIREDVSVLTL---LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
A V A E + + +VLC L I + Y RP + + I
Sbjct: 577 LRATVAAHTEQIRTIARSISAIDVLCGLSEIAATQG----------YCRPQMVPSREIHI 626
Query: 357 DGGRHPILES--IHNDFIPNNIFISEA---------ANMVIVTGPNMSGKSTYLQQVCLI 405
GRHP++E + F+PN+ + +A +++I+TGPN SGKS YL+Q+ LI
Sbjct: 627 TDGRHPVVEKALLAGFFVPNSTQLGQAEHITATVEHPDLIILTGPNASGKSCYLRQLGLI 686
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
I+AQIG ++PA +T+ + DRIFTR+G VD+L + STFM EM ETA ++ + + SL+
Sbjct: 687 QIMAQIGSFIPATAATLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATPNSLV 746
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
++DE+GR T++ DG +IAW+ E+L + +++ TIFA+H L+ELA+I PNV V
Sbjct: 747 LLDEIGRGTATFDGLSIAWAVAEYLATEIRSRTIFATHYHELNELASILPNVANYQVTVK 806
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+++ F Q++ G YG+ +AGLP TVI AR + S+I
Sbjct: 807 ELPDQIIFLHQVQPGGAS-KSYGIEAGRLAGLPPTVISRARQVMSQI 852
>gi|373494868|ref|ZP_09585465.1| DNA mismatch repair protein MutS [Eubacterium infirmum F0142]
gi|371967230|gb|EHO84702.1| DNA mismatch repair protein MutS [Eubacterium infirmum F0142]
Length = 867
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 182/603 (30%), Positives = 299/603 (49%), Gaps = 75/603 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M++D S+RNLEI E L+ N K SL +L TKT G RL++ L +PL D +
Sbjct: 271 MSLDKASLRNLEISETLYD-----KNIKGSLLGVLDKTKTAMGARLIKKMLREPLNDADK 325
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKS 119
IN RLD ++E+ + L L + L+K + +++ +++ N K
Sbjct: 326 INDRLDAVEEIYIDPLLENDLVESLKKI------------YDFERLAARIATGTANGK-- 371
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I L+ ++ LP + L + S LL +I+ + + A + I + I E+
Sbjct: 372 -----DLIALRNSIAVLPNIKADLSSSGSKLLKDIHDGISNLDDIADL---ITQSISENA 423
Query: 180 LHARVPFVARTQQCFAIKGG---IDGL---LDIARRSFCDTSEAVHNLANKYREELKLPN 233
F IK G IDG LD + S D + L RE +
Sbjct: 424 -------------GFTIKEGGLIIDGFSEELDKLKASIKDAKAWIAGLEAHERERTGIKT 470
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNK-- 286
LK+ +N G+Y+ + + +P +I+ NN T EL N K
Sbjct: 471 LKVGYNKVFGYYIDVTRAN-SNLVPEDYIRKQTLVNNERYITPELKETENLVFNAETKIN 529
Query: 287 SAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
E ++ +EA + I++ + +L +V+C + ++ YT+P
Sbjct: 530 KLEYEIFVSIRTQIEARIKEIQDTSKAIAIL-DVICSFAAVSRNYG----------YTKP 578
Query: 347 HFTENGPLAIDGGRHPILESIHN--DFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVC 403
+ L I+ GRHP++E + F+ N ++++ ++++I+TGPNMSGKSTY++Q
Sbjct: 579 IVDNSKELVIEAGRHPVVERMEGGEQFVSNETYLNDTDSSLMIITGPNMSGKSTYMRQNA 638
Query: 404 LIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERS 463
LIV++AQ GC+VP + I VVDRIFTR+G DNL STF EM E ++++ S+RS
Sbjct: 639 LIVLMAQAGCFVPCDRARIGVVDRIFTRIGASDNLSGGQSTFFVEMSELSYILNCASDRS 698
Query: 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAY--TIFASHMENLSELATIYPNVKILHF 521
LI++DE+GR TS+ DG +IAWSC E+L + + T+FA+H L+ L + VK L+
Sbjct: 699 LIILDEIGRGTSTYDGLSIAWSCIEYLCNKNTHIRTLFATHYHELTALESQIDGVKNLNV 758
Query: 522 YVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
V + + F ++ G YG+ +A++AG+P +++ A +++ + E EI
Sbjct: 759 DVAEDDGDIVFLHKIVPGAAS-RSYGIHVAKLAGVPKVLLDNAE---NKLAELEESGSEI 814
Query: 582 NCL 584
N L
Sbjct: 815 NIL 817
>gi|168218088|ref|ZP_02643713.1| DNA mismatch repair protein MutS [Clostridium perfringens NCTC
8239]
gi|182379897|gb|EDT77376.1| DNA mismatch repair protein MutS [Clostridium perfringens NCTC
8239]
Length = 910
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 174/575 (30%), Positives = 303/575 (52%), Gaps = 48/575 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL + Y ++ + I + + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLNDYYNNL---DDLRDIYELLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G + +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNM+GKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++ +G YG+ +A++AG+P VI A+ I
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDEVINRAKEI 795
>gi|166031820|ref|ZP_02234649.1| hypothetical protein DORFOR_01521 [Dorea formicigenerans ATCC
27755]
gi|166028273|gb|EDR47030.1| DNA mismatch repair protein MutS [Dorea formicigenerans ATCC 27755]
Length = 874
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 180/587 (30%), Positives = 294/587 (50%), Gaps = 55/587 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ + RNLE+ E L K+ SL +L TKT G R LR + QPL
Sbjct: 261 MLLDSATRRNLELCETLRE-----KQKRGSLLWVLDKTKTAMGARNLRKYIEQPLVQKYD 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD L+EL+ N +E R + +++ SK+
Sbjct: 316 IEKRLDALNELLDN------------AISREEIREYLSPIYDLERLVSKI------TYQS 357
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I +++L LP + +L + S LL +Y + E ++ I + I ED
Sbjct: 358 ANPRDMIAFESSLSMLPHIKYILSEMTSPLLKELYEDLDTLEDLCTL---IKDAIQED-- 412
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A ++ I+ G + +D R + D + + L + RE+ + NLK+ +N
Sbjct: 413 ----PPLA-MKEGGIIRDGYNPEVDKLRSAKSDGKDWLAKLESDEREKTGIKNLKIKYNK 467
Query: 241 RQGFYLSIPH--KDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + + KD+ +P + + N EL L A + Y
Sbjct: 468 VFGYYLEVTNSFKDL---VPDYYTRKQTLANAERYIIPELKELEDTILGAEDKLYSLEYE 524
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ + +DV + A+V+ +D + A + Y RP E G + I
Sbjct: 525 LYSDIRSRVAKDVVRVQKTAKVIAQID----TLASLALVAEQNNYVRPKINEKGVIDIKD 580
Query: 359 GRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E I ND FI N+ ++++ + + I+TGPNM+GKSTY++Q LIV++AQIG +V
Sbjct: 581 GRHPVVEKMIPNDMFISNDTYLNDKKDRIAIITGPNMAGKSTYMRQTALIVLMAQIGSFV 640
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +VDRIFTR+G D+L S STFM EM E A +++N + +SL+++DE+GR TS
Sbjct: 641 PASKADIGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRGTS 700
Query: 476 SSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAW+ EH+ + L A T+FA+H L+EL NV ++ + ++ N D
Sbjct: 701 TFDGLSIAWAVIEHISNSKLLGAKTLFATHYHELTELEGKIDNVN--NYCIAVKENGDDI 758
Query: 533 KFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F +K G YG+ +A++AG+P +V + A+ I + + ++
Sbjct: 759 IFLRKIVKGGADK--SYGIQVAKLAGVPESVTDRAKEIVEELVQTDI 803
>gi|308271253|emb|CBX27862.1| DNA mismatch repair protein mutS [uncultured Desulfobacterium sp.]
Length = 875
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 190/589 (32%), Positives = 300/589 (50%), Gaps = 74/589 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID TS +NLEI + + T +K +L +L +T T G RL+R+ L PL++ E I
Sbjct: 271 IDETSCQNLEIFKNIR-----TGSKHGTLLGVLDSTLTPMGGRLMRSWLRYPLQNREEIL 325
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSK-VLDVDNAKKSQT 121
RLD ++EL ++ + R + + +++ SK V+ NA+
Sbjct: 326 YRLDAVEELKNDVT------------SRRNIREQLNTVYDIERLGSKIVMGHSNAR---- 369
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV------I 175
++ LK +L LP + + ++ +S V ++E IGE+ I
Sbjct: 370 ---DLVALKNSLLTLPSIKYIAENLKSSFF------VWDSE--------IGELSVLAQLI 412
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
D+ + P + + IK G LDI R+ + L K +EE K+ +LK
Sbjct: 413 DKAIREDAPPVI---NEGGLIKEGFSEELDILIRAGSQGKGWLAKLEAKEKEETKINSLK 469
Query: 236 LPFNNRQGFYLSIPHKDIQGK-LPSTFI--QVVKHGNNIHCSTLELASLNVRNKSAAGEC 292
+ FN G+Y+ + Q K +PS +I Q + + L+ ++ N
Sbjct: 470 VRFNKVFGYYIEVSKA--QAKFVPSHYIRKQTLVNAERYITDELKQYEKDILNSQD---- 523
Query: 293 YIRTEICLEALVDAIREDVSVLTLL----AEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
R I L IRE+ + L L A + LD I N+F+ + Y+RP
Sbjct: 524 --RRNILEYELFTQIRENAAKLNPLIQQVAGFIARLDCI-NAFSEVAHE---NNYSRPDL 577
Query: 349 TENGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLI 405
+ G ++I+ GRHP++E + F+PN+I + + N + I+TGPNM+GKST L+QV LI
Sbjct: 578 NDEGLISIEEGRHPVVEKMITGERFVPNSIMMDDENNQILIITGPNMAGKSTVLRQVALI 637
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
V++A IG +VPA ++I + D+IFTR+G +DNL S STFM EM+ETA ++ N S RSL+
Sbjct: 638 VLMAHIGSFVPAAKASINITDKIFTRVGALDNLSSGQSTFMVEMQETANILNNSSSRSLV 697
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLSLKA---YTIFASHMENLSELATIYPNVKILHFY 522
+MDE+GR TS+ DG +IAW+ E+L L T+FA+H L +LA VK +
Sbjct: 698 IMDEIGRGTSTFDGISIAWAVAEYLHDLDGKGVKTLFATHYHELIDLALTKERVKNFNIL 757
Query: 523 VVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
V N+ + F +L DG + YG+ +A +AG+P +I A+ I +I
Sbjct: 758 VKEWNDEIVFLRKLVDGGTN-RSYGIQVARLAGIPGKIIARAKKILYKI 805
>gi|156975771|ref|YP_001446678.1| DNA mismatch repair protein MutS [Vibrio harveyi ATCC BAA-1116]
gi|166232149|sp|A7MTT8.1|MUTS_VIBHB RecName: Full=DNA mismatch repair protein MutS
gi|156527365|gb|ABU72451.1| hypothetical protein VIBHAR_03515 [Vibrio harveyi ATCC BAA-1116]
Length = 853
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 180/580 (31%), Positives = 292/580 (50%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+R+L+ L QP++ ++T+N
Sbjct: 266 LDAATRRNLELTQNLSG---GTDN---TLAEVLDHCATPMGSRMLKRWLHQPMRCVDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF + ++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQSLFTDIQPIFKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V LA+ Y +K A + EV D E +
Sbjct: 367 ------LRHAMQQLPELEAVTSS-----LAHPYL-----KKLAQFAAPMDEVCDLLERAI 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + I G + LD R+ +E + L RE + LK+ +N
Sbjct: 411 KENPPVVIR--EGGVIAEGYNAELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNA 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 469 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAVEKKL- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + ++ + LA + LD++ N S Y RP + ++
Sbjct: 527 ----WEELFDLLMPNLEKIQNLASAISQLDVLQNLAERADSLD----YCRPTLNKEAGIS 578
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + ++ FI N I +S M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 579 IQAGRHPVVEQVTSEPFIANPIELSSNRKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 639 VPAESAHIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 698
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 699 STYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFM 758
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P VI+ AR+ S++ +
Sbjct: 759 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARNKLSQLEQ 797
>gi|330807814|ref|YP_004352276.1| DNA mismatch repair protein, MutS Family domain V [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|423695601|ref|ZP_17670091.1| DNA mismatch repair protein MutS [Pseudomonas fluorescens Q8r1-96]
gi|327375922|gb|AEA67272.1| DNA mismatch repair protein, MutS Family domain V [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|388008994|gb|EIK70245.1| DNA mismatch repair protein MutS [Pseudomonas fluorescens Q8r1-96]
Length = 859
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 284/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + CL + EQL L + + +R+L + NA+
Sbjct: 324 ARQSSITCLLDRYRFEQLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + D ++ L + R+ + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPELQVAMTDLEAPHLQQLARTTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQALSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +++ T EL + + SA R ++
Sbjct: 472 RIHGYFIELPSKQAE-QAPADYVRRQTLKGAERFITPELKAFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 531 YEALLEDLISQLPPLQDTAGALAELDVLSNLAERALNLD----LNCPRFVSEPCMRISQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAHLRAYTLFATHYFELTVLPESQPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVITRAREHLSRL 798
>gi|397697712|ref|YP_006535595.1| DNA mismatch repair protein mutS [Pseudomonas putida DOT-T1E]
gi|397334442|gb|AFO50801.1| DNA mismatch repair protein mutS [Pseudomonas putida DOT-T1E]
Length = 857
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 175/587 (29%), Positives = 292/587 (49%), Gaps = 50/587 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D++ +
Sbjct: 266 LDGASRRNLELDINL------AGGRDNTLQSVIDRCQTAMASRLLSRWLNRPLRDLKVLQ 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + + F L L++ + +R+L + NA+
Sbjct: 320 ARQDSIRCLLDSYR-FEKLQPQLKEI-GDIERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + AS+ +R +ID
Sbjct: 363 --DLARLRDALGALPELQNAMTELEAPHLARLAAITGTYPELASLLERA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKAGYDNELDELLAISENAGQFLIDLETREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P +I+ T EL + + SA R ++ +A
Sbjct: 471 GYFIELPTKQAE-QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDA 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ + P F + L I+ GRHP
Sbjct: 530 LLETLISHLAPLQDSAAALAELDVLSNLAERALNLD----LSCPRFVDEPCLRIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLGLDNSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
YGL +A++AG+P+ VI+ AR + + R+E L ++Q
Sbjct: 766 SQ-SYGLAVAQLAGVPTAVIQRAR--------EHLGRLETTSLPHEQ 803
>gi|134095352|ref|YP_001100427.1| DNA mismatch repair protein MutS [Herminiimonas arsenicoxydans]
Length = 870
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 167/593 (28%), Positives = 282/593 (47%), Gaps = 58/593 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ E + G N +LF +L +T G+RLLR L +D
Sbjct: 264 IGLDAATRRNLELTETIR----GQDNNSATLFSLLDHCRTAMGSRLLRHWLHHARRDQAV 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
R ++ LM + GL+ L P + +R+ + +++ D+
Sbjct: 320 ARARHAAINALMRTDACT-GLASTLASVP-DVERIATRIALQ----SARPRDLAG----- 368
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE--- 177
++ L LP L Y S+C + A + K I + +
Sbjct: 369 --------MRGGLQQLPSL-------------RAYVSMCNQDADAPLLKTIHDALATPSE 407
Query: 178 --DVLHARVPF--VARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
D++ + A + I G D LD R + + + +L + R + N
Sbjct: 408 CLDLVERAIALEPAAMVRDGGVIARGFDAELDELRGLSENAGQFLVDLETRERTRTGINN 467
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
L++ +N GFY+ + H K+P + + N T EL + + SA
Sbjct: 468 LRVEYNKVHGFYIEVTHGQTD-KVPDDYRRRQTLKNAERYITPELKAFEDKALSAQERAL 526
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
R + + ++ + + + L +A L LD +V H + + P
Sbjct: 527 AREKYLYDQVLQQMAQHIGTLQNIAHALAQLDTLVALAEHALRHN----WCAPQLIAEPT 582
Query: 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
+AI+ GRHP++E+ FI N+ ++ + ++++TGPNM GKSTY++QV LI +LA +G
Sbjct: 583 IAIEQGRHPVVENHIERFIANDCLLNNESRLLLITGPNMGGKSTYMRQVALITLLAYVGS 642
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA +TI +DRIFTR+G D+L STFM EM E+A ++ +E SL++MDE+GR
Sbjct: 643 FVPATSATIGPIDRIFTRIGAADDLAGGRSTFMVEMTESAAILNGATENSLVLMDEVGRG 702
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG A+AW+ HL+ S +++T+FA+H L++L ++P+ +H V + + F
Sbjct: 703 TSTFDGLALAWAIARHLIDSTRSFTLFATHYFELTQLPEVHPSAANVHLSAVEHKDSIVF 762
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ 585
++ GP YGL +A++AG+P VI AR K + +E N +Q
Sbjct: 763 LHAVQAGPAS-QSYGLQVAQLAGVPQAVIRAAR--------KHLATLEANSMQ 806
>gi|335043021|ref|ZP_08536048.1| mismatch repair ATPase [Methylophaga aminisulfidivorans MP]
gi|333789635|gb|EGL55517.1| mismatch repair ATPase [Methylophaga aminisulfidivorans MP]
Length = 843
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 185/631 (29%), Positives = 314/631 (49%), Gaps = 58/631 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D S +NLE+ L L + SL +L T T G RLLR L++P++D +
Sbjct: 254 IRLDPQSRKNLELERNLSGGL------ENSLISVLDKTATPMGARLLRRWLMRPIRDQKV 307
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R + E + + F L + + +R+L + T++ D
Sbjct: 308 LVDRQQVIQEFLDHHS--FSDCHALMRSLGDIERILSRMALR----TARPRD-------- 353
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVIDEDV 179
+ ++ L+ LP L ++LK QS L + R + +E +A +++ + IDE
Sbjct: 354 -----FMHIRRLLETLPDLRRLLKSKQSTHLRQLDRQLGTFSELFALLQQAM---IDEP- 404
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + R IK G LD R + S + L + R + LK+ +N
Sbjct: 405 -----PVLIRDGGV--IKAGYHAELDRLRDLHKNASGFLDELERQERLRTGVNTLKVGYN 457
Query: 240 NRQGFYLSIPHK-DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+++ + DI+ LP+ +++ N T EL + SA + +
Sbjct: 458 KVHGYFIELSRAHDIE--LPNEYVRRQTLKNAERYITPELKQFEEQVLSANEKALALEKA 515
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAI 356
E L D + ++S L+ + L LD++ N A T+ Y P F L I
Sbjct: 516 LYEELFDKVEPELSALSQCSMSLAELDVLANLAERAETLD------YVAPQFVNESGLYI 569
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
+ GRHP++E H+ F N++ ++ + +I+TGPNM GKSTY++Q LIV++A +G YV
Sbjct: 570 EAGRHPVVEVCHDHPFCANDLKLTAEQSTLIITGPNMGGKSTYMRQTALIVLMAHMGSYV 629
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VD++FTR+G D+L S STFM EM E A ++ N ++ SL++MDE+GR TS
Sbjct: 630 PATKAIIGPVDQVFTRIGASDDLASGRSTFMVEMNEAANILNNATKHSLVLMDEIGRGTS 689
Query: 476 SSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG A+AWSC E L+ + AYT+FA+H +++L ++ + +H + +++ F
Sbjct: 690 TFDGLALAWSCAEKLIRDIGAYTLFATHYFEMTQLPELFEQARNVHLDAIEHGDKIVFLH 749
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLY- 593
QLK+G YGL +A++AG+P+ VI+ A+ +++ + E + L + Q L+
Sbjct: 750 QLKEGAAS-QSYGLQVAQLAGVPADVIDAAK---AKLKQLEQTHYSVETLAEQPQQDLFT 805
Query: 594 ---HAAQRLICLKYSNQDEESIRHALQNLKE 621
++ L+ + DE S++ AL L E
Sbjct: 806 QHTEPSELEKKLRAISPDELSLKQALDMLYE 836
>gi|190411095|gb|ACE78302.1| truncated MutS [Vibrio parahaemolyticus]
Length = 836
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 179/578 (30%), Positives = 295/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 254 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 307
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 308 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 354
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + ++A+ + E++ E +
Sbjct: 355 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQFAAPIDEVCELL-ERAIKE 400
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L RE + LK+ +N
Sbjct: 401 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNAVH 458
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 459 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 514
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 515 --WEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 568
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 569 AGRHPVVEQVTSDPFIANPIELSPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 628
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 629 AESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 688
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 689 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 748
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 749 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 785
>gi|357058861|ref|ZP_09119707.1| DNA mismatch repair protein MutS [Selenomonas infelix ATCC 43532]
gi|355373207|gb|EHG20528.1| DNA mismatch repair protein MutS [Selenomonas infelix ATCC 43532]
Length = 864
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 181/587 (30%), Positives = 294/587 (50%), Gaps = 61/587 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++RNLEI L KK +LF +L T+T GTRLL+A L PL
Sbjct: 262 MQLDTYTLRNLEITRSLRDG-----GKKNTLFDVLDFTRTPMGTRLLKAWLEHPLLTPHR 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RL + EL+ N L L + LR + +R+L + NA+
Sbjct: 317 IDARLGAVAELVENAPLRGSLREHLRSV-YDFERLLTRIETQTA----------NAR--- 362
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE-VIDEDV 179
++ L+ +L ALP + ++L A + LL + S+ E + +R + ++DE
Sbjct: 363 ----DLVALRVSLAALPAVREILGTAATSLLTRAHASI---ETFDDLRNTLERAIVDEPG 415
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
L R + I+ G D LD D+ + + + R + LK+ +N
Sbjct: 416 LSVRDGGI--------IRAGYDAALDELHAFSHDSKALLQEMEERERMRTGIKTLKIGYN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYI 294
G+Y+ + H + ++P+ +I+ N T EL + L + K A E +I
Sbjct: 468 KVFGYYIEVRHSG-RDQVPADYIRKQTLANTERFITEELKAFEAKILGAQEKITALEYHI 526
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
TE L + +R + + +A + +D ++ S A + RY RP T NG +
Sbjct: 527 FTE-----LREQVRAQLVPIQNVARAIARVD-VLQSLAKAAANY---RYVRPQVTTNGAI 577
Query: 355 AIDGGRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQI 411
I GRHP++E + F+PN+ +S +++TGPNM+GKSTY++QV L+ ++AQI
Sbjct: 578 LIRDGRHPLVERLLQREVFVPNDTDLSHGGTETMLITGPNMAGKSTYMRQVALLTLMAQI 637
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + I VDRIFTR+G D+L S STFM EM E A +++ ++ SL+++DE+G
Sbjct: 638 GSFVPARAAEIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATKDSLVILDEIG 697
Query: 472 RATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS+ DG +IA + EH+ + A T+FA+H L+E+ N +I ++ + +R
Sbjct: 698 RGTSTFDGMSIARAVVEHIDKYIHAKTLFATHYHELTEM----ENERIRNYCIAVREKGK 753
Query: 531 DFKF--QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ F ++ G YG+ +A +AGLP V A I + +KE
Sbjct: 754 NVAFLRRIVAGAAD-KSYGIHVARLAGLPPKVTARAEEILHALEQKE 799
>gi|22299783|ref|NP_683030.1| DNA mismatch repair protein MutS [Thermosynechococcus elongatus
BP-1]
gi|44888209|sp|Q8DGS4.1|MUTS_THEEB RecName: Full=DNA mismatch repair protein MutS
gi|22295967|dbj|BAC09792.1| DNA mismatch repair protein [Thermosynechococcus elongatus BP-1]
Length = 874
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 185/590 (31%), Positives = 296/590 (50%), Gaps = 74/590 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+ + + + + SL + T T G RLLR LLQPL DIE I
Sbjct: 311 LDPQTRRNLELTQTVRDGSF-----QGSLLWAIDRTATAMGGRLLRRWLLQPLLDIEEIT 365
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS-QT 121
R D + ELM+N L L + L++ L + T+ D+ + S +T
Sbjct: 366 ARQDAIAELMANSSLRQSLHRHLQEIYD-----LERLAGRAGSGTANARDLAALRDSFRT 420
Query: 122 LIS-SIILLKTA---LDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+S + ++ T+ L AL L V++ LA+ + ++ S+ + G ++
Sbjct: 421 LVSLAAVVANTSSPYLQALAQLPPVIEQ-----LADTLSAALVDQPPTSLSE--GGIL-- 471
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ G LD R+ + + NL + R+ + LK+
Sbjct: 472 -------------------RPGAYPELDQQRQQIEQDQQWILNLEAQERQRTGISTLKVG 512
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY---- 293
+ G+YLS+ + ++P +I+ N T EL R +A +
Sbjct: 513 YTKVFGYYLSVSRAKLN-QVPDDYIRKQTLTNEERFITAELKEREARLLAAQSHLFELEY 571
Query: 294 -----IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
+R ++ +A IRE + + + +L L ++ + Y RP
Sbjct: 572 QYFVQLREQVAAQA--STIREIAAAVAAVDALLGLAEVAL-----------YQGYCRPQL 618
Query: 349 TENGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406
T + L I GGRHP++E F+PN+ + A+++++TGPN SGKS YL+QV LI
Sbjct: 619 TRDRQLCIRGGRHPVVEQTLPAGFFVPNDTQLGTGADLMVLTGPNASGKSCYLRQVGLIQ 678
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
+LAQ+G YVPA +T+ + DRIFTR+G VD+L + STFM EM ETA ++ + +RSL++
Sbjct: 679 LLAQMGSYVPATSATLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHAGDRSLVL 738
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
+DE+GR T++ DG AIAWS E+L + LK+ TIFA+H L++LAT+ PNV ++ VV+
Sbjct: 739 LDEIGRGTATFDGLAIAWSVAEYLATILKSRTIFATHYHELNQLATLLPNVA--NYQVVV 796
Query: 526 RN--NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+ N + F Q+K G YG+ +AGLP+ VI+ AR + +I K
Sbjct: 797 KELPNEIIFLHQVKPGGADR-SYGIEAGRLAGLPAVVIQRAREVMCQIEK 845
>gi|422874017|ref|ZP_16920502.1| DNA mismatch repair protein MutS [Clostridium perfringens F262]
gi|380305012|gb|EIA17295.1| DNA mismatch repair protein MutS [Clostridium perfringens F262]
Length = 909
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 173/579 (29%), Positives = 305/579 (52%), Gaps = 48/579 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL N + ++ + I + + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNL---DDLRDIYELLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G + +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNM+GKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +VD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISIVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
++ +G YG+ +A++AG+P VI A+ I ++
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDEVINRAKEILEKL 799
>gi|182626334|ref|ZP_02954089.1| DNA mismatch repair protein MutS [Clostridium perfringens D str.
JGS1721]
gi|177908353|gb|EDT70898.1| DNA mismatch repair protein MutS [Clostridium perfringens D str.
JGS1721]
Length = 909
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 174/575 (30%), Positives = 303/575 (52%), Gaps = 48/575 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL N + ++ + I + + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNL---DDLRDIYELLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G + +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNM+GKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++ +G YG+ +A++AG+P VI A+ I
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDEVINRAKEI 795
>gi|421522615|ref|ZP_15969256.1| DNA mismatch repair protein MutS [Pseudomonas putida LS46]
gi|402753715|gb|EJX14208.1| DNA mismatch repair protein MutS [Pseudomonas putida LS46]
Length = 857
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 175/587 (29%), Positives = 292/587 (49%), Gaps = 50/587 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D++ +
Sbjct: 266 LDGASRRNLELDINL------AGGRDNTLQSVIDRCQTAMASRLLSRWLNRPLRDLKVLQ 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + + F L L++ + +R+L + NA+
Sbjct: 320 ARQDSIRCLLDSYR-FEKLQPQLKEI-GDIERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + AS+ +R +ID
Sbjct: 363 --DLARLRDALGALPELQNAMTELEAPHLARLAAITGTYPELASLLERA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKAGYDNELDELLAISENAGQFLIDLETREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P +I+ T EL + + SA R ++ +A
Sbjct: 471 GYFIELPTKQAE-QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDA 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ + P F + L I+ GRHP
Sbjct: 530 LLETLISHLAPLQDSAAALAELDVLSNLAERALNLD----LSCPRFVDEPCLRIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLGLDNSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
YGL +A++AG+P+ VI+ AR + + R+E L ++Q
Sbjct: 766 SQ-SYGLAVAQLAGVPTAVIQRAR--------EHLGRLETTSLPHEQ 803
>gi|433590034|ref|YP_007279530.1| DNA mismatch repair protein MutS [Natrinema pellirubrum DSM 15624]
gi|448333850|ref|ZP_21523038.1| DNA mismatch repair protein MutS [Natrinema pellirubrum DSM 15624]
gi|433304814|gb|AGB30626.1| DNA mismatch repair protein MutS [Natrinema pellirubrum DSM 15624]
gi|445621424|gb|ELY74899.1| DNA mismatch repair protein MutS [Natrinema pellirubrum DSM 15624]
Length = 889
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 170/586 (29%), Positives = 289/586 (49%), Gaps = 49/586 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E + + SLF + T+T G RLL+ L +P + +ET
Sbjct: 264 VTLDATTQRNLELTETMQG------DGDGSLFATIDHTETSAGGRLLKEWLQRPRRSLET 317
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R +D L + + + + D L K ++ D
Sbjct: 318 LEERQASVDALST---AALARDEIQDRLGEAYD--LARLASKASHGSADARD-------- 364
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYAS--IRKRIGEVIDED 178
++ ++ L LP +A+ ++ + + + V ++ A+ +R+ + E + ED
Sbjct: 365 -----LVAVRETLAVLPAVAETIESTPALADSPLSAIVDRPDRAAARELRETLEEAVAED 419
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P TQ KG D L ++ R + E + LA + + + L ++ +
Sbjct: 420 ------PPSTVTQGELLRKGYDDELDEVIER-HEEVREWLDTLAEREKRQHGLSHVTVDR 472
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYIR 295
N G+Y+ + G +P + Q+ N+ +T EL +R + GE
Sbjct: 473 NKTDGYYIQVGKSAADG-VPDHYEQIKTLKNSKRFTTEELEEKERDVLRLEDRRGELEYE 531
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
L D + E ++L + L +D + + H +R+ RP L
Sbjct: 532 LFEELR---DEVAERAALLQDVGRALATIDALASLATHAAE----NRWVRPELHRGDDLT 584
Query: 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
I+ GRHP++E +F+PN++ + E ++VTGPNMSGKSTY++QV IV+LAQIG +V
Sbjct: 585 IEQGRHPVVEQT-TEFVPNDVRMDEDRGFLVVTGPNMSGKSTYMRQVACIVLLAQIGSFV 643
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD IFTR+G +D L STFM EM E + ++ +E SL+++DE+GR T+
Sbjct: 644 PAEAAEIGVVDGIFTRVGALDELAQGRSTFMVEMSELSNILHTATEESLVILDEVGRGTA 703
Query: 476 SSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IAW+ E+L + +KA T+FA+H L+ LA P V +H R+ + F
Sbjct: 704 TYDGISIAWAATEYLHNEVKAKTLFATHYHELTGLAENLPRVANVHVAADERDGEVTFLR 763
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
++DGP YG+ +A++AG+P V++ +R + R+ +E K +E
Sbjct: 764 TVRDGPTDR-SYGVHVADLAGVPDPVVDRSREVLERL--REEKAIE 806
>gi|227484985|ref|ZP_03915301.1| possible DNA mismatch repair protein MutS [Anaerococcus
lactolyticus ATCC 51172]
gi|227236982|gb|EEI86997.1| possible DNA mismatch repair protein MutS [Anaerococcus
lactolyticus ATCC 51172]
Length = 869
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 185/589 (31%), Positives = 309/589 (52%), Gaps = 63/589 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M I++ + +NLE+ L T+NK+ +L +L T+ G+R++ L +PL D +
Sbjct: 274 MEIESNTRKNLELTRNL-----STNNKENTLISILDQADTVMGSRMIHDWLERPLIDRDK 328
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD +D + L +S L + +R+L +K NA+
Sbjct: 329 INRRLDLVDGFYEDSILSRNVSNLLDSVY-DLERLLAKISYKRA----------NAR--- 374
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEK-YASIRKRIGEVIDEDV 179
+I LK ++ +P L VL D+ + L+ N+ ++ + E Y I K I +DE
Sbjct: 375 ----DLISLKNSIKEMPKLKHVLADSTNNLIKNLGLNLPDVEDIYELINKSI---VDE-- 425
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSE-AVHNLANKYREELKLPNLKLPF 238
P + T+ IK D LD + DT+E + +K RE + NLK+ F
Sbjct: 426 -----PPINITEGGI-IKSQYDKDLD-NLKEMADTAEDKLIEYESKQRELTGIKNLKVIF 478
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECY 293
N G+ + + +I K+ ++I+ N +T EL + LN + K E
Sbjct: 479 NKNNGYSIEVTKSNID-KIDQSYIRKQTLKNQERYTTEELENISSLILNGKEKINLLEYE 537
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFA---HTISTKPVDRYTRPHFTE 350
+ +I L +R L L++++ +D + NSFA H S Y +P+ TE
Sbjct: 538 LFNKIVENILNSTLR-----LQSLSKMIANIDSL-NSFAKIAHKYS------YCKPNITE 585
Query: 351 NGPLAIDGGRHPILES--IHNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVI 407
+ ++I GRHP++E N+FI N+ I + N++ I+TGPNM+GKSTY++Q+ LI+I
Sbjct: 586 SNEISIIEGRHPVIEINLDENEFIANDTNIGQDDNLIQIITGPNMAGKSTYMRQMALIII 645
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQIG +VPA + I + D+IFTR+G DN+ STFM EM E + +++N +E+S +++
Sbjct: 646 MAQIGSFVPAKSAEIGICDKIFTRIGASDNISKGESTFMLEMNEVSNIIKNSTEKSFVIL 705
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
DE+GR TSS DG +IA + E+L K T+FA+H L+ L + NV+ L ++
Sbjct: 706 DEVGRGTSSDDGLSIAMALVEYLSKHKKVKTVFATHFHELTVLESELKNVRNLKIEILEE 765
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
NN L F ++ G + YG+ +A+++GLP ++E A++I ++ ++
Sbjct: 766 NNNLIFLRKISRG-KSDRSYGIEVAKLSGLPDEILENAKNIMEKLANED 813
>gi|221222520|sp|A4G717.3|MUTS_HERAR RecName: Full=DNA mismatch repair protein MutS
gi|193222369|emb|CAL62304.2| DNA mismatch repair protein MutS [Herminiimonas arsenicoxydans]
Length = 893
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 167/593 (28%), Positives = 282/593 (47%), Gaps = 58/593 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ E + G N +LF +L +T G+RLLR L +D
Sbjct: 287 IGLDAATRRNLELTETIR----GQDNNSATLFSLLDHCRTAMGSRLLRHWLHHARRDQAV 342
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
R ++ LM + GL+ L P + +R+ + +++ D+
Sbjct: 343 ARARHAAINALMRTDACT-GLASTLASVP-DVERIATRIALQ----SARPRDLAG----- 391
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE--- 177
++ L LP L Y S+C + A + K I + +
Sbjct: 392 --------MRGGLQQLPSL-------------RAYVSMCNQDADAPLLKTIHDALATPSE 430
Query: 178 --DVLHARVPF--VARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
D++ + A + I G D LD R + + + +L + R + N
Sbjct: 431 CLDLVERAIALEPAAMVRDGGVIARGFDAELDELRGLSENAGQFLVDLETRERTRTGINN 490
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
L++ +N GFY+ + H K+P + + N T EL + + SA
Sbjct: 491 LRVEYNKVHGFYIEVTHGQTD-KVPDDYRRRQTLKNAERYITPELKAFEDKALSAQERAL 549
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
R + + ++ + + + L +A L LD +V H + + P
Sbjct: 550 AREKYLYDQVLQQMAQHIGTLQNIAHALAQLDTLVALAEHALRHN----WCAPQLIAEPT 605
Query: 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
+AI+ GRHP++E+ FI N+ ++ + ++++TGPNM GKSTY++QV LI +LA +G
Sbjct: 606 IAIEQGRHPVVENHIERFIANDCLLNNESRLLLITGPNMGGKSTYMRQVALITLLAYVGS 665
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA +TI +DRIFTR+G D+L STFM EM E+A ++ +E SL++MDE+GR
Sbjct: 666 FVPATSATIGPIDRIFTRIGAADDLAGGRSTFMVEMTESAAILNGATENSLVLMDEVGRG 725
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG A+AW+ HL+ S +++T+FA+H L++L ++P+ +H V + + F
Sbjct: 726 TSTFDGLALAWAIARHLIDSTRSFTLFATHYFELTQLPEVHPSAANVHLSAVEHKDSIVF 785
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ 585
++ GP YGL +A++AG+P VI AR K + +E N +Q
Sbjct: 786 LHAVQAGPAS-QSYGLQVAQLAGVPQAVIRAAR--------KHLATLEANSMQ 829
>gi|394988846|ref|ZP_10381681.1| hypothetical protein SCD_01254 [Sulfuricella denitrificans skB26]
gi|393792225|dbj|GAB71320.1| hypothetical protein SCD_01254 [Sulfuricella denitrificans skB26]
Length = 798
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 170/569 (29%), Positives = 283/569 (49%), Gaps = 47/569 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI E L +L+ +L TT G+RLLR L PL+D +
Sbjct: 268 LDAAARRNLEISETLRG------EPAPTLYSLLDTTAGSMGSRLLRHWLHHPLRDRAELR 321
Query: 63 TRLDCLDELM--SNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
R D + L+ S + Q L++ + +R+ + +++ D+
Sbjct: 322 ARFDAIARLIGESGAPAYAQTHQGLKQI-ADIERITARIALR----SARPRDLAG----- 371
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L+ +L ALP +A ++ LL + ++ N+ +A ++ E L
Sbjct: 372 --------LRNSLLALPPIA-----GETALLDSPRLTLLANQLHAP-----ETLVTELTL 413
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ A ++ I G D LD R + E + L + RE + NLK+ +N
Sbjct: 414 AIQPEPAAVLREGGVIATGYDAELDELRAIQSNCGEFLLALEARERERSGISNLKVEYNR 473
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
GFY+ + +P + + N T EL + + SA+ R ++
Sbjct: 474 VHGFYIEVTRSQADA-VPDDYRRRQTLKNAERFITPELKTFEDKALSASERALAREKMLY 532
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMI--VNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E+L+D + + L +A + LD++ + A T+ + P FT+N + I G
Sbjct: 533 ESLLDNLAPHIPALQEIAAAVAELDVLAALAERAETLG------WVAPEFTDNAMIEITG 586
Query: 359 GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
GRHP++E+ +FI N+ +S M+++TGPNM GKSTY++Q LIV+LA G +VPA
Sbjct: 587 GRHPVVEAQTANFIANDSLLSRTRQMLLITGPNMGGKSTYMRQTALIVLLAHCGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I VD+IFTR+G D+L STFM EM ETA ++ N +E SL+++DE+GR TS+ D
Sbjct: 647 RAKIGPVDQIFTRIGASDDLAGGRSTFMVEMTETADILNNATENSLVLLDEIGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G A+AW+ HL+ + +T+FA+H L+ L + + +H + + + F ++
Sbjct: 707 GLALAWAIARHLIEKTRCHTLFATHYFELTRLTQEFRQITNVHLDALEHRDHIVFLHSVQ 766
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+GP YGL +A +AG+P+ VI+ A+S
Sbjct: 767 EGPAS-QSYGLQVAALAGVPAPVIQAAKS 794
>gi|350532399|ref|ZP_08911340.1| DNA mismatch repair protein MutS [Vibrio rotiferianus DAT722]
Length = 853
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 180/580 (31%), Positives = 292/580 (50%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+R+L+ L QP++ ++T+N
Sbjct: 266 LDAATRRNLELTQNLSG---GTDN---TLAEVLDHCATPMGSRMLKRWLHQPMRCVDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF + ++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQSLFTDIQPIFKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V LA+ Y +K A + EV D E +
Sbjct: 367 ------LRHAMQQLPELETVTSS-----LAHPYL-----KKLAQFAAPMDEVCDLLERAI 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + I G + LD R+ +E + L RE + LK+ +N
Sbjct: 411 KENPPVVIR--EGGVIAEGYNAELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNA 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 469 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAVEKKL- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + ++ + LA + LD++ N S Y RP + ++
Sbjct: 527 ----WEELFDLLMPNLEKMQNLASAISQLDVLQNLAERADSLD----YCRPTLDKEAGIS 578
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + ++ FI N I +S M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 579 IQAGRHPVVEQVTSEPFIANPIELSSNRKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 639 VPAESAHIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 698
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 699 STYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFM 758
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P VI+ AR+ S++ +
Sbjct: 759 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARNKLSQLEQ 797
>gi|444426187|ref|ZP_21221611.1| DNA mismatch repair protein MutS [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444240600|gb|ELU52138.1| DNA mismatch repair protein MutS [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 853
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 180/580 (31%), Positives = 291/580 (50%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+R+L+ L QP++ ++T+N
Sbjct: 266 LDAATRRNLELTQNLSG---GTDN---TLAEVLDHCATPMGSRMLKRWLHQPMRCVDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF + ++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQSLFTDIQPIFKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V LA+ Y +K A + EV D E +
Sbjct: 367 ------LRHAMQQLPELEAVTSS-----LAHPYL-----KKLAQFAAPLDEVCDLLERAI 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + I G + LD R+ +E + L RE + LK+ +N
Sbjct: 411 KENPPVVIR--EGGVIAEGYNAELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNA 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 469 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAVEKKL- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + ++ + LA + LD++ N S Y RP + ++
Sbjct: 527 ----WEELFDLLMPNLEKMQNLASAISQLDVLQNLAERADSLD----YCRPTLDKEAGIS 578
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + ++ FI N I +S M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 579 IQAGRHPVVEQVTSEPFIANPIELSSNRKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 639 VPAESARIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 698
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 699 STYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFM 758
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P VI+ AR S++ +
Sbjct: 759 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARHKLSQLEQ 797
>gi|373106358|ref|ZP_09520661.1| DNA mismatch repair protein MutS [Stomatobaculum longum]
gi|371652733|gb|EHO18141.1| DNA mismatch repair protein MutS [Stomatobaculum longum]
Length = 867
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 183/586 (31%), Positives = 290/586 (49%), Gaps = 57/586 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S RNLE+ E L NK SL +L TKT G R LR L +PL I I
Sbjct: 264 IDAASRRNLELTETLRD-----KNKHGSLLWVLDRTKTAMGARFLRNLLEKPLLGIPEIE 318
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKSQT 121
R D + E +S R +E R + +++ ++ L NA+
Sbjct: 319 VRQDAIQEFLS------------RYIDREELREYLAPIYDMERLMGRITLGSANARDMLA 366
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
SSI ALP + +L+ + LL + +S+ + +++ R + D+ L
Sbjct: 367 FGSSIA-------ALPPIKDLLQSFSAPLLRSFSQSLDDLRDLSALLARA--IADDPPLT 417
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
R + IK G +D RR+ + + + L + R + + NL++ +N
Sbjct: 418 LR--------EGHIIKDGYHEDVDRYRRASTEGKQWLAELEERERNKTGIKNLRIKYNKV 469
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL- 300
G+Y + K ++P F + N +T EL L + A E + E L
Sbjct: 470 FGYYFEVT-KSALSQVPDYFQRRQTLANAERYTTEELGKLE-ESILGAEEKLLTLEFDLF 527
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ + + +V+ + A ++ LD ++ S A +Y RP T +GPL I GGR
Sbjct: 528 QEVRQKLSAEVARIQTSAGIIAYLDALL-SLADVAERY---QYVRPKLTADGPLRIVGGR 583
Query: 361 HPILESIHND--FIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E + F+ N+ + SE + ++TGPNM+GKSTY++Q LI +LAQ G +VPA
Sbjct: 584 HPVVERMMESGRFVENDTLLDSEENRIAVITGPNMAGKSTYMRQTALIALLAQTGSFVPA 643
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I + DRIFTR+G D+L S STFM EM E A +++N ++RSLI++DE+GR TS+
Sbjct: 644 TEAEIGISDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATKRSLIILDEIGRGTSTF 703
Query: 478 DGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD--- 531
DG +IAW+ E+L + + A T+FA+H L+EL P V H Y + + D
Sbjct: 704 DGLSIAWAVVEYLATGRLAGAKTLFATHYHELTELEGSIPGV---HNYCIAVKEQGDTIA 760
Query: 532 -FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ +K G YG+ +A++AG+P TV AR I + ++ ++
Sbjct: 761 FLRKIVKGGADQ--SYGIQVAKLAGVPETVTARAREIAAELSGADI 804
>gi|333894239|ref|YP_004468114.1| DNA mismatch repair protein [Alteromonas sp. SN2]
gi|332994257|gb|AEF04312.1| DNA mismatch repair protein [Alteromonas sp. SN2]
Length = 877
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 173/567 (30%), Positives = 284/567 (50%), Gaps = 44/567 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ H+ G N +LF ++ TT T G+RLL+ + P+ D
Sbjct: 255 VQLDAATRRNLELT---HNLAGGIEN---TLFSVMDTTTTAMGSRLLQRYIHSPITDQHE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++ R D ++ L+ NE + L+ + +R++ + + D A+
Sbjct: 309 LHNRQDAIEALIDNEP--DAIRGHLKTI-GDIERIMARLALRSARPR------DFAR--- 356
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LK AL+ LP L + L L + ++V Y ++ + I ++
Sbjct: 357 --------LKNALNTLPDLQEALGAYNVAQLNELKQAVS---TYPELQALLNNAIIDNP- 404
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G + LD R+ ++ + + + RE + LK+ +N
Sbjct: 405 ----PVVIRDGGVIA--EGFNSELDELRKLSQGATDYLDAMEQRERERTGISTLKVGYNR 458
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
GF++ I + K P+ +I+ N T EL + ++ G +
Sbjct: 459 VHGFFIEISRAN-SDKAPAEYIRRQTLKNTERFITPELKEHEDKVLTSQGRALALEKQLY 517
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
EAL D + ++ L A L LD++ +S +D Y RP + L + GR
Sbjct: 518 EALFDEVAPSLNALIETAAALAKLDVLCCFAERALS---LDWY-RPTLSMESALTYEEGR 573
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + D FI N + ++++ M+I+TGPNM GKSTY++Q LI +LA IG YVPA
Sbjct: 574 HPVVEQVMKDPFIANPLTLNDSQRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQN 633
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ DG
Sbjct: 634 AHIGKIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATEHSLVLMDEIGRGTSTYDG 693
Query: 480 FAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
++AW+C +L L AYT+FA+H L+EL +V +H V ++ + F +++
Sbjct: 694 LSLAWACASYLAQKLNAYTLFATHYFELTELPDTEKSVVNVHLDAVEHDDTIRFMHSVQN 753
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETAR 565
G +GL +A++AG+P VI+ A+
Sbjct: 754 GAAS-KSFGLQVAQLAGVPKPVIKAAQ 779
>gi|374429178|dbj|BAL49573.1| DNA mismatch repair protein MutS, partial [Pseudomonas knackmussii]
Length = 727
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 174/570 (30%), Positives = 282/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T G+RLL L +PL+D +
Sbjct: 138 LDGASRRNLELDINL------AGGRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDRAILE 191
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 192 ARQESIACLLERYR-FENLQPQLKEI-GDVERILARIGLR------------NARPR--- 234
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + S+ + A + R +ID
Sbjct: 235 --DLARLRDALAALPALQHGMNELEAPHLGELASSIRTYPELADLLARA--IIDNP---- 286
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 287 --PAVIRDGGV--IKRGYDAELDELQTLSENAGQYLMDLEIREKARTGLPNLKVGYNRIH 342
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 343 GYYIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKQLYEE 401
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N + RP F E + I+ GRHP
Sbjct: 402 LLELLIAQLAPLQDTAAALAELDVLANLAERALHLD----LNRPRFVEESGIRIEQGRHP 457
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + E M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 458 VVEQVLDTPFVANDLTLDEDTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAAKCE 517
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 518 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 577
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ EHL L+A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 578 LAWAAAEHLAKLRAFTLFATHYFELTVLPESEPVVANVHLNATEHNERIVFLHHVLPGPA 637
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI+ AR +R+
Sbjct: 638 SQ-SYGLAVAQLAGVPGMVIQRAREHLARL 666
>gi|392552334|ref|ZP_10299471.1| DNA mismatch repair protein MutS [Pseudoalteromonas spongiae
UST010723-006]
Length = 850
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 179/594 (30%), Positives = 294/594 (49%), Gaps = 52/594 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + +NLE+ L T L +L T T G+RLL+ L P++D + +N
Sbjct: 258 LDAATRKNLELTVNLSGGFDNT------LAQVLDKTATPMGSRLLKRRLHSPIRDQQELN 311
Query: 63 TRLDCLDE---LMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
RLD L E L N +L L Q + +R++ + +++ D+
Sbjct: 312 NRLDALGEIHDLAINHELHDTLKQV-----GDLERIIARLALR----SARPRDLSR---- 358
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYAS-IRKRIGEVIDED 178
L+ AL L + +L DA S L I K+A+ I + E+++
Sbjct: 359 ---------LRLALQTLHPIHDLLNDANSTRLKQI--------KHATPILTELQELLEHA 401
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
++ P + R A G + LD R ++ + + + RE + LK+ +
Sbjct: 402 IID-NPPVLIRDGGVIA--PGYNAELDQWRNLSKGATDILEQMEIRERERTGIATLKISY 458
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + +P+ +++ NN EL + ++ +
Sbjct: 459 NKVHGYYIEVSKANAN-LVPADYVRRQTLKNNERYIIPELKEHEDKVLNSQSNALALEKR 517
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E L D I + VL +A L LD ++N+ A + +D Y RP+ +E+ + I G
Sbjct: 518 LYEELFDIISPQIDVLQKMAAALSELD-VINNLAERAES--LD-YVRPNLSEDNCIDIKG 573
Query: 359 GRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E + FI N ++ + M+I+TGPNM GKSTY++Q LIV++A IGCY+PA
Sbjct: 574 GRHPVVEFVMQQPFIANPTYLDDKRKMLIITGPNMGGKSTYMRQTALIVLMAHIGCYIPA 633
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++I + DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+
Sbjct: 634 QSASIGITDRIFTRIGASDDLASGRSTFMVEMTETANILNNATENSLVLMDEIGRGTSTY 693
Query: 478 DGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+ E+L ++ A T+FA+H L+EL + +H + + + FK +
Sbjct: 694 DGLSLAWATAEYLAKNIAAKTLFATHYFELTELVDQLEILANVHLDAIEYQDTIAFKHTV 753
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-KEVKRMEINCLQYKQI 589
DG +GL +A +AG+P VI A+ S + + + V M +N QI
Sbjct: 754 LDGAAS-KSFGLQVAGLAGVPKAVINRAKQKLSLLEQHQSVSEMPLNNAADMQI 806
>gi|395444997|ref|YP_006385250.1| DNA mismatch repair protein MutS [Pseudomonas putida ND6]
gi|388558994|gb|AFK68135.1| DNA mismatch repair protein MutS [Pseudomonas putida ND6]
Length = 857
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 175/587 (29%), Positives = 292/587 (49%), Gaps = 50/587 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D++ +
Sbjct: 266 LDGASRRNLELDINL------AGGRDNTLQSVIDRCQTAMASRLLSRWLNRPLRDLKVLQ 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + + F L L++ + +R+L + NA+
Sbjct: 320 ARQDSIRCLLDSYR-FEKLQPQLKEI-GDIERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + AS+ +R +ID
Sbjct: 363 --DLARLRDALGALPELQNAMTELEAPHLARLAAITGTYPELASLLERA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKAGYDNELDELLAISENAGQFLIDLEAREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P +I+ T EL + + SA R ++ +A
Sbjct: 471 GYFIELPTKQAE-QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDA 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ + P F + L I+ GRHP
Sbjct: 530 LLETLISHLAPLQDSAAALAELDVLSNLAERALNLD----LSCPRFVDEPCLRIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLGLDNSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
YGL +A++AG+P+ VI+ AR + + R+E L ++Q
Sbjct: 766 SQ-SYGLAVAQLAGVPTAVIQRAR--------EHLGRLETTSLPHEQ 803
>gi|422654858|ref|ZP_16717586.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330967907|gb|EGH68167.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 859
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 173/590 (29%), Positives = 289/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLSILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R
Sbjct: 367 -----DLARLRDALSALPELQQAMNDLDAPHLQQLAQTASTYPELADLLQR--------A 413
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
++ P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 414 INDNPPAVIR--DGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ PHF + I+ G
Sbjct: 531 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPHFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVNNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVITRA--------KEHLQRLETTSLPHEQ 807
>gi|148549358|ref|YP_001269460.1| DNA mismatch repair protein MutS [Pseudomonas putida F1]
gi|166232127|sp|A5W816.1|MUTS_PSEP1 RecName: Full=DNA mismatch repair protein MutS
gi|148513416|gb|ABQ80276.1| DNA mismatch repair protein MutS [Pseudomonas putida F1]
Length = 857
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 175/587 (29%), Positives = 292/587 (49%), Gaps = 50/587 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D++ +
Sbjct: 266 LDGASRRNLELDINL------AGGRDNTLQSVIDRCQTAMASRLLSRWLNRPLRDLKVLQ 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + + F L L++ + +R+L + NA+
Sbjct: 320 ARQDSIRCLLDSYR-FEKLQPQLKEI-GDIERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + AS+ +R +ID
Sbjct: 363 --DLARLRDALGALPELQNAMTELEAPHLARLAAITGTYPELASLLERA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKAGYDNELDELLAISENAGQFLIDLEAREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P +I+ T EL + + SA R ++ +A
Sbjct: 471 GYFIELPTKQAE-QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDA 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ + P F + L I+ GRHP
Sbjct: 530 LLETLISHLAPLQDSAAALAELDVLSNLAERALNLD----LSCPRFVDEPCLRIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLGLDNSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
YGL +A++AG+P+ VI+ AR + + R+E L ++Q
Sbjct: 766 SQ-SYGLAVAQLAGVPTAVIQRAR--------EHLGRLETTSLPHEQ 803
>gi|346306310|ref|ZP_08848468.1| DNA mismatch repair protein mutS [Dorea formicigenerans 4_6_53AFAA]
gi|345900115|gb|EGX69943.1| DNA mismatch repair protein mutS [Dorea formicigenerans 4_6_53AFAA]
Length = 880
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 180/587 (30%), Positives = 294/587 (50%), Gaps = 55/587 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ + RNLE+ E L K+ SL +L TKT G R LR + QPL
Sbjct: 267 MLLDSATRRNLELCETLRE-----KQKRGSLLWVLDKTKTAMGARNLRKYIEQPLVQKYD 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD L+EL+ N +E R + +++ SK+
Sbjct: 322 IEKRLDALNELLDN------------AISREEIREYLSPIYDLERLVSKI------TYQS 363
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I +++L LP + +L + S LL +Y + E ++ I + I ED
Sbjct: 364 ANPRDMIAFESSLSMLPHIKYILSEMTSPLLKELYEDLDTLEDLCTL---IKDAIKED-- 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A ++ I+ G + +D R + D + + L + RE+ + NLK+ +N
Sbjct: 419 ----PPLA-MKEGGIIRDGYNPEVDKLRSAKSDGKDWLAKLESDEREKTGIKNLKIKYNK 473
Query: 241 RQGFYLSIPH--KDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + + KD+ +P + + N EL L A + Y
Sbjct: 474 VFGYYLEVTNSFKDL---VPDYYTRKQTLANAERYIIPELKELEDTILGAEDKLYSLEYE 530
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ + +DV + A+V+ +D + A + Y RP E G + I
Sbjct: 531 LYSDIRSRVAKDVVRVQKTAKVIAQID----TLASLALVAEQNNYVRPKINEKGVIDIKE 586
Query: 359 GRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E I ND FI N+ ++++ + + I+TGPNM+GKSTY++Q LIV++AQIG +V
Sbjct: 587 GRHPVVEKMIPNDMFISNDTYLNDKKDRIAIITGPNMAGKSTYMRQTALIVLMAQIGSFV 646
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +VDRIFTR+G D+L S STFM EM E A +++N + +SL+++DE+GR TS
Sbjct: 647 PAAKADIGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRGTS 706
Query: 476 SSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAW+ EH+ + L A T+FA+H L+EL NV ++ + ++ N D
Sbjct: 707 TFDGLSIAWAVIEHISNSKLLGAKTLFATHYHELTELEGKIDNVN--NYCIAVKENGDDI 764
Query: 533 KFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F +K G YG+ +A++AG+P +V + A+ I + + ++
Sbjct: 765 IFLRKIVKGGADK--SYGIQVAKLAGVPESVTDRAKEIVEELVQTDI 809
>gi|428319738|ref|YP_007117620.1| DNA mismatch repair protein MutS [Oscillatoria nigro-viridis PCC
7112]
gi|428243418|gb|AFZ09204.1| DNA mismatch repair protein MutS [Oscillatoria nigro-viridis PCC
7112]
Length = 875
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 181/588 (30%), Positives = 289/588 (49%), Gaps = 65/588 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + ++ SL + T T G R LR +LQPL +I+ I
Sbjct: 306 LDYQTRRNLEITQTVRDGVF-----HGSLLWAIDKTSTAMGGRALRRWVLQPLLNIKGIC 360
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + EL+ N L L Q LR+ + +++T + A
Sbjct: 361 ARHDTIQELVENNGLRQDLQQLLRQI------------YDIERLTGR------AGSGTAS 402
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L +L LP LA + S L + E+ A+ ++DE +H
Sbjct: 403 ARDLVALADSLSKLPALASIAAQGISPYLKALQNVPPILEELANTIH--AHLVDEPPIHL 460
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ + I+ GI+ +LD R + E + NL R+ + NLK+ +N
Sbjct: 461 K--------EGGLIRSGINPMLDEMRHTASADQEWIANLEATERKRTGISNLKVGYNKAF 512
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE---------CY 293
G+Y+SI + ++P + + N ST EL VR +A +
Sbjct: 513 GYYISITKSKVD-QVPKDYTRKQTLTNEERYSTEELKEREVRILTAREDLNQLEYDIFAK 571
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+R+E+ +A I +VS A+VLC L + Y RP TE+
Sbjct: 572 VRSEVGEQA---EIIRNVSRAVAAADVLCGLAEVAV----------YQNYCRPTMTESRE 618
Query: 354 LAIDGGRHPILES--IHNDFIPNNIFISEA-----ANMVIVTGPNMSGKSTYLQQVCLIV 406
+ I G HP++E F+PN+ F+ +++I+TGPN SGKS YL+QV LI
Sbjct: 619 IKIIEGCHPVVEKSLPPGFFVPNSAFLGREKSLNRPDLIILTGPNASGKSCYLRQVGLIQ 678
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQ+G +VPA +++ + DRIFTR+G VD+L + STFM EM ETA ++ + + +SL++
Sbjct: 679 LMAQMGSFVPAKAASLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATPQSLVL 738
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
+DE+GR T++ DG +IAWS E+L + ++A TIFA+H L+ELA+I NV V
Sbjct: 739 LDEIGRGTATFDGLSIAWSVAEYLATEIRARTIFATHYHELNELASILDNVANYQVTVKE 798
Query: 526 RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++ F Q++ G YG+ +AGLP +VI+ AR + +I K
Sbjct: 799 LPDQIVFLHQVQPGGAD-KSYGIEAGRLAGLPPSVIDRARQVMKQIEK 845
>gi|424034012|ref|ZP_17773422.1| DNA mismatch repair protein MutS [Vibrio cholerae HENC-01]
gi|408873756|gb|EKM12945.1| DNA mismatch repair protein MutS [Vibrio cholerae HENC-01]
Length = 853
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 180/580 (31%), Positives = 291/580 (50%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+R+L+ L QP++ ++T+N
Sbjct: 266 LDAATRRNLELTQNLSG---GTDN---TLAEVLDHCATPMGSRMLKRWLHQPMRCVDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF + ++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQSLFTDIQPIFKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V LA+ Y +K A + EV D E +
Sbjct: 367 ------LRHAMQQLPELEAVTSS-----LAHPYL-----KKLAQFAAPMDEVCDLLERAI 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + I G + LD R+ +E + L RE + LK+ +N
Sbjct: 411 KENPPVVIR--EGGVIAEGYNAELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNA 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 469 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAVEKKL- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + ++ + LA + LD++ N S Y RP + ++
Sbjct: 527 ----WEELFDLLMPNLEKMQNLASAISQLDVLQNLAERADSLD----YCRPTLDKEAGIS 578
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + ++ FI N I +S M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 579 IQAGRHPVVEQVTSEPFIANPIELSSDRKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 639 VPAESAHIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 698
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 699 STYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFM 758
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P VI+ AR S++ +
Sbjct: 759 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARHKLSQLEQ 797
>gi|363755494|ref|XP_003647962.1| hypothetical protein Ecym_7308 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891998|gb|AET41145.1| hypothetical protein Ecym_7308 [Eremothecium cymbalariae
DBVPG#7215]
Length = 876
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 173/612 (28%), Positives = 312/612 (50%), Gaps = 50/612 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++R LE++ L S F L T T G R LR N+LQPL + T
Sbjct: 264 MLIDPRTIRGLELVSNL------IEKNGLSFFKHLNRTVTKPGQRALRNNILQPLSNANT 317
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLC------HFCFKPKKVTSKVLDVD 114
I R + + EL +N L L L+ ++ D + C H K K + + +
Sbjct: 318 IKMRFEAVVELQANPDLLRSLRSELKTV-QDLDVLYCMLLSVNHGAIKQKHRINYAISLK 376
Query: 115 NAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
++ S I S+ L+ L A +L++ + NI+ +V + +++ I +
Sbjct: 377 DSFASSKKIKSL------LEESQLKASLLQEIKE----NIFGTVLND-----LQELINDH 421
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
I+ED A + Q +A++ G +GLLD+ R+ + + V+ +K E+ + N+
Sbjct: 422 INEDCTLATTDLEHQNQMIYAVRSGSNGLLDVLRQLYKKVIDEVYEYVSKLSEDHHM-NI 480
Query: 235 KLPFNNRQGFYLSIPHKDIQ-GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
+++ +GF++ + ++ L TFI ++ N I +T+ + LN R E
Sbjct: 481 DYGYDSSRGFFMKVKRTEVSTSDLHPTFINRIQKKNMIEFTTMHVVKLNARLNEVMSEIL 540
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ ++ +E L++ + ++VL ++AE + +LD++ + + T + P F++
Sbjct: 541 LMSDQLVERLLNDTVKHIAVLFMVAEAVSILDLLCSFAQYGSETNAI----VPEFSD--A 594
Query: 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIG 412
L I G RHPIL ++ +D++PN+I +++++ + I+TG NMSGKS Y++QV L+ I+AQIG
Sbjct: 595 LLIKGARHPILSTVIDDYVPNDIVCTKSSSSIQIITGCNMSGKSVYIKQVALLNIMAQIG 654
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
C +PA ++ + +I R+ D LE NSSTF EMKE A+ + +V +++L+++DELGR
Sbjct: 655 CPIPAEYACFPLYTKIHARVCN-DPLELNSSTFAAEMKEMAYFLHDVDDKTLMIIDELGR 713
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI-RNNRLD 531
+S DGFAI+ + EHL+ +H +++++ + P V LH + + L
Sbjct: 714 GSSIGDGFAISLAITEHLVQKNCTVFLTTHFNDIAKIMSSRPTVVHLHMSTTLDETDALK 773
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTV---------IETARSIT--SRITKKEVKRME 580
+++ + H+ +YGL + + P + I TAR T S +T +E +
Sbjct: 774 MTYKITNEFDHIKNYGLRVVKSLFPPKIIKEACELANSISTARKKTTNSLLTTEESLEYQ 833
Query: 581 INCLQYKQIQML 592
+Q +QI L
Sbjct: 834 GRVVQVRQIHYL 845
>gi|75909393|ref|YP_323689.1| DNA mismatch repair protein MutS [Anabaena variabilis ATCC 29413]
gi|123608965|sp|Q3M892.1|MUTS_ANAVT RecName: Full=DNA mismatch repair protein MutS
gi|75703118|gb|ABA22794.1| DNA mismatch repair protein MutS [Anabaena variabilis ATCC 29413]
Length = 854
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 182/590 (30%), Positives = 296/590 (50%), Gaps = 68/590 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + SL L T T G+R LR LLQPL DI+ I+
Sbjct: 302 VDNQTRRNLEITQTVRDGTF-----HGSLLWALDKTSTAMGSRALRRWLLQPLLDIKGIS 356
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+R D + EL++N +L L LR+ + +++T + A
Sbjct: 357 SRQDTIQELVTNTRLRQDLRHLLRQI------------YDLERLTGR------ASSGTAN 398
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L +L LP LA ++ DA S L + + E+ A +K +++ LH
Sbjct: 399 ARDLVALADSLSRLPELANLVIDAHSPFLKALQKVPPILEELA--QKIHAHLVESPPLHL 456
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ + I+ G++ LLD + + + + NL R +P LK+ FN
Sbjct: 457 K--------EGGLIRPGVNPLLDERKATVEADHQWIANLEVDERARTGIPLLKVGFNETF 508
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY--------- 293
G+Y+SI ++P+ +I+ N T EL R +A + +
Sbjct: 509 GYYISISRAKAD-QVPANYIRKQTLKNEERYITPELKEREARILTARDDLHKLEYEVFVT 567
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLC-LLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
+R E+ +A +AIR +S A+VLC L ++ V Y RP
Sbjct: 568 LREEVGEQA--EAIRH-LSRAVAAADVLCGLAELAV-----------YQGYCRPEMVNGR 613
Query: 353 PLAIDGGRHPILES--IHNDFIPNNIFIS------EAANMVIVTGPNMSGKSTYLQQVCL 404
+AI GRHP++E F+PN+ + + +++I+TGPN SGKS YL+QV L
Sbjct: 614 EIAIIDGRHPVVEQSLPAGFFVPNSTQLGSNEETHQLPDLIILTGPNASGKSCYLRQVGL 673
Query: 405 IVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSL 464
I ++AQIG +VPA + + + DRIFTR+G VD+L + STFM EM ETA ++ + + RSL
Sbjct: 674 IQLMAQIGSFVPAKSARLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATSRSL 733
Query: 465 IVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYV 523
+++DE+GR T++ DG +IAW+ E++ + +++ TIFA+H L+ELA + PNV V
Sbjct: 734 VLLDEIGRGTATFDGLSIAWAVAEYIATEIRSRTIFATHYHELNELAGMLPNVANYQVTV 793
Query: 524 VIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++ F Q++ G YG+ +AGLP+ VI+ A+ + +I K
Sbjct: 794 KELPDQIIFLHQVQPGGAD-KSYGIEAGRLAGLPTVVIQRAKQVMGQIEK 842
>gi|431801191|ref|YP_007228094.1| DNA mismatch repair protein MutS [Pseudomonas putida HB3267]
gi|430791956|gb|AGA72151.1| DNA mismatch repair protein MutS [Pseudomonas putida HB3267]
Length = 861
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 175/603 (29%), Positives = 294/603 (48%), Gaps = 42/603 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D++ +
Sbjct: 270 LDGASRRNLELDINL------AGGRDNTLQSVVDRCQTAMASRLLSRWLNRPLRDLKVLQ 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + F L L++ + +R+L + NA+
Sbjct: 324 ARQDSIRCLLDGYR-FEKLQPQLKEI-GDIERILARIGLR------------NARPR--- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + AS+ +R +ID
Sbjct: 367 --DLARLRDALGALPELQNAMAELEAPHLARLAAITGTYPELASLLERA--IIDNP---- 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 419 --PAVIRDGGV--LKAGYDNELDELLAISENAGQFLIDLEAREKARTGLANLKVGYNRVH 474
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P +I+ T EL + + SA R ++ +A
Sbjct: 475 GYFIELPTKQAE-QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDA 533
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ P F + L I+ GRHP
Sbjct: 534 LLETLISHLAPLQDSAAALAELDVLSNLAERALNLD----LNCPRFVDEPCLRIEQGRHP 589
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 590 VVEQVLTTPFVANDLGLDNSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 649
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 650 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 709
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 710 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 769
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLIC 601
YGL +A++AG+P+ VI+ AR +R+ + + + K + + H +
Sbjct: 770 SQ-SYGLAVAQLAGVPTAVIQRAREHLARLETTSLPHEQPPAQKAKDVPQVPHQSDLFAS 828
Query: 602 LKY 604
L +
Sbjct: 829 LPH 831
>gi|269960385|ref|ZP_06174758.1| DNA mismatch repair protein MutS [Vibrio harveyi 1DA3]
gi|269834812|gb|EEZ88898.1| DNA mismatch repair protein MutS [Vibrio harveyi 1DA3]
Length = 921
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 179/580 (30%), Positives = 292/580 (50%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+R+L+ L QP++ ++T+N
Sbjct: 334 LDAATRRNLELTQNLSG---GTDN---TLAEVLDHCATPMGSRMLKRWLHQPMRCVDTLN 387
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF + ++ + +R+L + + D A+
Sbjct: 388 NRLDAIGEI-KDQSLFTDIQPIFKQI-GDIERILARLALRSARPR------DMAR----- 434
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V LA+ Y +K A + +V D E +
Sbjct: 435 ------LRHAMQQLPELEAVTSS-----LAHPYL-----KKLAQFAAPMDQVCDLLERAI 478
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + I G + LD R+ +E + L RE + LK+ +N
Sbjct: 479 KENPPVVIR--EGGVIAEGYNAELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNA 536
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 537 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAVEKKL- 594
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + ++ + LA + LD++ N S Y RP + ++
Sbjct: 595 ----WEELFDLLMPNLEKMQNLASAISQLDVLQNLAERADSLD----YCRPTLDKEAGIS 646
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + ++ FI N I +S A M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 647 IQAGRHPVVEQVTSEPFIANPIELSSARKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 706
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 707 VPAESAHIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 766
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + + T+FA+H L+EL + PN+ +H V + + F
Sbjct: 767 STYDGLSLAWASAEWLATQIGSMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFM 826
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P VI+ AR S++ +
Sbjct: 827 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARHKLSQLEQ 865
>gi|30249667|ref|NP_841737.1| DNA mismatch repair protein MutS [Nitrosomonas europaea ATCC 19718]
gi|44888191|sp|Q82U08.1|MUTS_NITEU RecName: Full=DNA mismatch repair protein MutS
gi|30180704|emb|CAD85616.1| mutS; DNA mismatch repair protein [Nitrosomonas europaea ATCC
19718]
Length = 873
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 178/587 (30%), Positives = 294/587 (50%), Gaps = 51/587 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLEI L +L +L T T G+RLLR L PL++ T
Sbjct: 273 LRMDAATRRNLEITLTLRG------EDAPTLSSLLDTCSTGMGSRLLRHWLHHPLRNRIT 326
Query: 61 INTRLDCLDELMSN--EQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
+ RLD + +L+ E L+ G+ Q + + +R+ + T++ D+ +
Sbjct: 327 LQQRLDTVSDLIGAQPETLYAGIRQQFKHI-ADIERITSRIALR----TARPRDLSGLRD 381
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQ-SFLLANIYRSVCENEKYASIRKRIGEVIDE 177
S + II L A A + + + Q LL + + A IR+ G VI +
Sbjct: 382 SLMRLPGIIEL-IATSAAAAVHRFIPPMQPDPLLTQLLVRALQPVPGAVIRE--GGVIAD 438
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
G D LD R + E + L + RE +PNLK+
Sbjct: 439 ---------------------GFDAELDELRGLQGNCDEFLLQLEARERERTGIPNLKVE 477
Query: 238 FNNRQGFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N GFY+ + QG K+P + + N EL + + SA + R
Sbjct: 478 YNRVHGFYIEVTRA--QGEKIPPDYRRRQTLKNAERYIIPELQAFEHKTLSAREQALARE 535
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
++ E L++ + + + L +A + LD++ +FA + + YT+P FT++ L I
Sbjct: 536 KMLYERLLEQLADFIIPLQEIARSVAELDVLC-AFAERAA---LSGYTKPVFTDDPVLII 591
Query: 357 DGGRHPILESIHNDFIPNNIFIS----EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
+ GRHP++E+ +I N++ + E M+++TGPNM GKSTY++Q L V+LA G
Sbjct: 592 EAGRHPVVENQVEHYIANDVQLGAITRENRQMLVITGPNMGGKSTYMRQTALTVLLAHCG 651
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I +D+IFTR+G D+L STFM EM E A +++N + +SL+++DE+GR
Sbjct: 652 SFVPAQIARIGPIDQIFTRIGAADDLAGGRSTFMVEMTEAAGILRNATAQSLVLVDEIGR 711
Query: 473 ATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TS+ DG A+A++ HLL+ ++YT+FA+H L+ LA +P +H V R+
Sbjct: 712 GTSTFDGLALAFAIARHLLTQNQSYTLFATHYFELTRLAEEFPQAVNIHVTAVEHKRRIV 771
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
F ++++GP YGL +A +AG+P VI A I +R+ ++ + R
Sbjct: 772 FLHRIEEGPASR-SYGLHVAALAGVPDRVIRNAAKILARLEQETLSR 817
>gi|429737003|ref|ZP_19270877.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 138
str. F0429]
gi|429153637|gb|EKX96415.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 138
str. F0429]
Length = 864
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 182/587 (31%), Positives = 290/587 (49%), Gaps = 61/587 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++RNLEI L KK +LF +L T+T GTRLLRA L PL
Sbjct: 262 MQLDTYTLRNLEITRSLRDG-----GKKNTLFDVLDFTRTPMGTRLLRAWLEHPLLTPHR 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RLD + EL+ N L L + LR + +R+L + NA+
Sbjct: 317 IDARLDAVAELVENAGLRGTLREQLRSV-YDFERLLTRIETQTA----------NAR--- 362
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE-VIDEDV 179
++ L+ +L ALP + L A S LL R+ + + ++R + ++DE
Sbjct: 363 ----DLVALRVSLAALPAVRTALGSAASRLL---MRAAASIQTFDALRDTLERAIVDEPG 415
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
L R + RT G D +LD R D+ + + + R + LK+ +N
Sbjct: 416 LSVRDGGIIRT--------GYDAVLDELRAFSHDSKSLLQEMEERERTRTGIKTLKIGYN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYI 294
G+Y+ + H + ++P +I+ N T EL L K A E +I
Sbjct: 468 KVFGYYIEVRHSG-RDQVPDDYIRKQTLANTERFITEELKDFEAKILGAEEKITALEYHI 526
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
T L D ++ + + +A + +D ++ S A ++ RY RP T +G +
Sbjct: 527 FT-----TLRDEVKAQLVPIQNVARAIARVD-VLQSLAEAAASY---RYVRPKVTADGTI 577
Query: 355 AIDGGRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQI 411
I GRHP++E I F+PN+ +S +++TGPNM+GKSTY++QV L+ ++ Q+
Sbjct: 578 LIRDGRHPLVERILEREIFVPNDTELSHGGTETMLITGPNMAGKSTYMRQVALLTLMVQV 637
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + I VDRIFTR+G D+L S STFM EM E A +++ + SL+++DE+G
Sbjct: 638 GSFVPARTAEIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLVILDEIG 697
Query: 472 RATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS+ DG +IA + EH+ + A T+FA+H L+E+ N I ++ + +R
Sbjct: 698 RGTSTFDGMSIARAVVEHIDTRIHAKTLFATHYHELTEM----ENEHIRNYCIAVREKGK 753
Query: 531 DFKF--QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ F ++ G YG+ +A +AGLP+ V A I + +KE
Sbjct: 754 NVAFLRRIVAGAAD-KSYGIHVARLAGLPTKVTARAEEILHALEQKE 799
>gi|94501246|ref|ZP_01307768.1| DNA mismatch repair protein MutS [Bermanella marisrubri]
gi|94426673|gb|EAT11659.1| DNA mismatch repair protein MutS [Oceanobacter sp. RED65]
Length = 895
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 163/565 (28%), Positives = 281/565 (49%), Gaps = 43/565 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + +NLEI L+ + +L +L T T G+RLLR L +PL+ +
Sbjct: 282 MDAATRKNLEIDINLNG------DTDFTLAWVLDRTATAMGSRLLRRWLNRPLRQQSVLK 335
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + ++ + + L++ + +R+L + +
Sbjct: 336 ERQHAIGAMIETHG-YEDIHNVLKQI-GDIERILSRVALRSARP---------------- 377
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL LP L + D + +A + + + Y + + + E+
Sbjct: 378 -RDLARLRDALAVLPQLQNAISDVDAAPIAALGQRIS---TYPETVETLTNAVVENP--- 430
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G D LD R + + + ++ + RE+ + LK+ +N
Sbjct: 431 --PVVIRDGGVIA--EGFDEELDELRGISENAGQFLIDIETREREKTGISTLKVGYNRVH 486
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I K G+ P+ +I+ N T EL + S+ R + E
Sbjct: 487 GYYIEI-SKAQAGEAPTEYIRRQTLKNAERFITPELKEFEDKALSSKSRALSREKALYEE 545
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++++ + ++ L A + LD++ N ++ RY RP TEN + I GRHP
Sbjct: 546 LIESLADQLAALQDTAAAISELDVLSNLAERAVT----QRYVRPELTENAGIDIQQGRHP 601
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E++ D F+ N++ + M+++TGPNM GKSTY++Q I +LA IG YVPA +T
Sbjct: 602 VVEAVIEDPFVANDVRFDQNRKMLVITGPNMGGKSTYMRQAAHIALLAHIGSYVPADSAT 661
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I ++DRIFTRMG+ D++ STFM EM ETA ++ + + +SL++MDE+GR TS+ DG +
Sbjct: 662 IGLLDRIFTRMGSSDDVAGGRSTFMVEMTETANILHHATAQSLVLMDEVGRGTSTFDGLS 721
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+ E+L +AYT+FA+H +++L NV +H N+ + F +++GP
Sbjct: 722 LAWASAEYLSKHTQAYTLFATHYFEMTQLVESSDNVANVHLTATEHNDHIVFLHHVEEGP 781
Query: 541 RHVPHYGLLLAEVAGLPSTVIETAR 565
YGL +A++AG+P V+E A+
Sbjct: 782 AS-QSYGLQVAKLAGVPLEVVEQAK 805
>gi|304438411|ref|ZP_07398351.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304368494|gb|EFM22179.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 860
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 179/580 (30%), Positives = 291/580 (50%), Gaps = 63/580 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++RNLEI L KK +LF +L T+T GTRLL+A L PL
Sbjct: 262 MQLDTYTLRNLEITRSLRDG-----GKKNTLFDVLDFTRTPMGTRLLKAWLEHPLLTPHR 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RLD + EL+ L ++ R H + +++ +++ ++Q
Sbjct: 317 IDARLDAVAELVEKSTL------------RDALRDALHTVYDFERLLTRI-------ETQ 357
Query: 121 TL-ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE-VIDED 178
T ++ L+ +L ALP + L A S LL R+ E E + ++R + ++DE
Sbjct: 358 TANARDLVALRISLAALPAVRACLTAAASRLLV---RAAGEIETFDALRDELTRALVDEP 414
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
L R + I+ G D LD RR D+ + + + R + LK+ +
Sbjct: 415 GLSVR--------EGGMIRAGYDADLDELRRFSHDSKSLLQEMEERERTRTGIKTLKIGY 466
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECY 293
N G+Y+ + H + ++P +I+ N T EL L K A E +
Sbjct: 467 NKVFGYYIEVRHSG-RDQVPEGYIRKQTLANTERFITEELKDFEAKILGAEEKITALEYH 525
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ TE L + +RE + + +A + +D++ + A S RY RP +G
Sbjct: 526 LFTE-----LRERVREQLVPIQGVARAIARVDVLQSLAAAAASY----RYVRPTVGADGG 576
Query: 354 LAIDGGRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I GRHP++E I + F+PN+ +S +++TGPNM+GKSTY++QV L+ ++AQ
Sbjct: 577 IRIRDGRHPLVERILQRDVFVPNDTELSHGGTETMLITGPNMAGKSTYMRQVALLTLMAQ 636
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G +VPA + I VDRIFTR+G D+L S STFM EM E A +++ + SL+++DE+
Sbjct: 637 VGSFVPARTAEIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLVILDEI 696
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG +IA + EH+ + A T+FA+H L+E+ N +I ++ + +R
Sbjct: 697 GRGTSTFDGMSIARAVVEHIDGRIHAKTLFATHYHELTEM----ENERIRNYCIAVREKG 752
Query: 530 LDFKF--QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ F ++ G YG+ +A +AGLP V E A I
Sbjct: 753 KNVVFLRRIVAGAAD-KSYGIHVARLAGLPQRVTERAEEI 791
>gi|304440469|ref|ZP_07400358.1| DNA mismatch repair protein MutS [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371221|gb|EFM24838.1| DNA mismatch repair protein MutS [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 864
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 180/577 (31%), Positives = 300/577 (51%), Gaps = 43/577 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D S+RNLEI++ L+S + K SL +L TKT G RLLR + +PL +++
Sbjct: 268 MILDENSMRNLEILKGLNS-----NRKSGSLLEVLDYTKTSMGQRLLRRWIEEPLLNVDE 322
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D ++E S+ L + L + +R + K++ ++ + +
Sbjct: 323 IKKRQDYVEEFKSDFILLDDVRSILSSII-DMERQMV-------KISDNEINPNEFNALK 374
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++S++ LK+ L+ K L + S+ L +Y + E I +I ED
Sbjct: 375 GSLASVMELKSYLEGSNF--KNLNEI-SYELKPLYNIIEE----------IDSMIVEDA- 420
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +T IK G + LD R D + + +L K +EE + NLK+ +N
Sbjct: 421 ----P--VKTVDVKFIKDGYNEELDELFRLSKDGKKFLIDLEAKEKEETGIKNLKIKYNK 474
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+++ + K +P +I+ + T+EL + + +A E
Sbjct: 475 ILGYFIEVT-KSALDMVPERYIRKQTLVGSERFFTIELKEMESKILNAHDEANSLQLKLY 533
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L++ ++ S+L ++E++ +D++ I +R+ RP E+ + I GR
Sbjct: 534 DNLIENFKKYTSLLLEVSEIVSRIDVLQGLAKSAIE----NRFIRPELNEDNTIIIKDGR 589
Query: 361 HPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HPI+E + D FIPN+ + N++ I+TGPNM+GKSTY++Q+ LIVI+AQIG +VPA
Sbjct: 590 HPIVEFKNRDDSFIPNDTILDMDKNLIHIITGPNMAGKSTYMRQIALIVIMAQIGSFVPA 649
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
I +VDRIFTR+G DNL STFM EMKE A +++N +++SLI++DE+GR TS+
Sbjct: 650 KSCNIGIVDRIFTRIGASDNLSKGESTFMVEMKEVANILKNATDKSLIILDEVGRGTSTF 709
Query: 478 DGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG +IAWS E++ ++ A T+FA+H LS++ Y NV L+ V + F ++
Sbjct: 710 DGMSIAWSIVEYISENIGAKTVFATHYHELSKIEETYKNVSNLNIKVKKDGEEIIFLRKI 769
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+G YG+ +A++AG+ V + A I + K
Sbjct: 770 VEGWTD-NSYGIDVAKLAGIDEKVTKRAEEILKSLEK 805
>gi|168211840|ref|ZP_02637465.1| DNA mismatch repair protein MutS [Clostridium perfringens B str.
ATCC 3626]
gi|170710211|gb|EDT22393.1| DNA mismatch repair protein MutS [Clostridium perfringens B str.
ATCC 3626]
Length = 895
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 173/575 (30%), Positives = 303/575 (52%), Gaps = 48/575 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL N + ++ + I + + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNL---DDLRDIYELLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G + +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNM+GKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +VD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISIVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++ +G YG+ +A++AG+P VI A+ I
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDEVINRAKEI 795
>gi|403386461|ref|ZP_10928518.1| DNA mismatch repair protein MutS [Clostridium sp. JC122]
Length = 890
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 179/576 (31%), Positives = 305/576 (52%), Gaps = 46/576 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID +S RNLEI E L NKK SL +L T T G R LR + QPL D E I
Sbjct: 261 IDGSSRRNLEITESLRD-----KNKKGSLLWVLDKTSTAMGGRRLRNWVDQPLVDKEKIV 315
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D ++EL+ N L L++ + +R++ K++SK + NAK+
Sbjct: 316 LRQDAIEELVKNISKEEDLKDALKEVY-DIERLV-------GKISSKSI---NAKE---- 360
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+I LK +++ +P + +VL + +S LL + + + K I E++D+ +
Sbjct: 361 ---LISLKNSIEKIPTIKQVLTNFKSNLLLKVLNELDD-------LKDIYEILDKSITDN 410
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P ++ ++ IK G D +D R S + + NL + +EE + +LK+ +N
Sbjct: 411 --PAIS-VKEGNIIKDGFDERIDDFRNSKRCGKQWIANLESTEKEETGIRSLKVGYNKVF 467
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY-IRTEICLE 301
G+Y+ I ++ +I+ N T EL + + A + + EI ++
Sbjct: 468 GYYIEITKANLALVPEGRYIRKQTLSNAERFITPELKEMEEKILGAEDKLMSLEYEIFVD 527
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
+ D + V + + ++++ LD + S A + Y +P+ G L I+ GRH
Sbjct: 528 -IRDMVENHVDRMKISSKLISELDCLC-SLARVARE---NGYIKPNINTKGILKIEDGRH 582
Query: 362 PILESIH--NDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
P++E + N+F+ N+ + N ++++TGPNM+GKSTY++QV LI ++AQIG +VPA
Sbjct: 583 PVVEKMLDVNEFVANDTKLDTKNNQLLLITGPNMAGKSTYMRQVALITLMAQIGSFVPAK 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
F+ I + D+IFTR+G D+L STFM EM E + +++N + +SLI++DE+GR TS+ D
Sbjct: 643 FADISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILRNATNKSLILLDEVGRGTSTYD 702
Query: 479 GFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
G +IAWS E++ ++K T+FA+H L++L + V+ V +N + F +
Sbjct: 703 GLSIAWSVIEYICKNSNMKCKTLFATHYHELTKLEGMVEGVRNYSIAVKEIDNSIIFLRK 762
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+ +G YG+ +A++AG+P VI+ AR I ++
Sbjct: 763 IIEGGAD-ESYGIEVAKLAGIPEIVIDRAREILCKL 797
>gi|220932004|ref|YP_002508912.1| DNA mismatch repair protein MutS [Halothermothrix orenii H 168]
gi|254766630|sp|B8CX98.1|MUTS_HALOH RecName: Full=DNA mismatch repair protein MutS
gi|219993314|gb|ACL69917.1| DNA mismatch repair protein MutS [Halothermothrix orenii H 168]
Length = 896
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 176/581 (30%), Positives = 297/581 (51%), Gaps = 49/581 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ + NLE L S + G +K SL ++L T T G RL++ + QPL D
Sbjct: 266 MVLDSATRYNLE----LTSTIRGNKHKG-SLLNVLDQTITSMGGRLIKKWINQPLIDRNK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I TRLD ++EL++N L + + L+ + +R+L + NA+
Sbjct: 321 IETRLDAVEELVNNYLLLQEIREHLKGI-YDLERILGKVSYGSA----------NARDLA 369
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L SI+ LP + K L+ + L N++ + A + R ++DE +
Sbjct: 370 ALKYSIL-------KLPQIKKDLEQLNTKLFKNMHETFDPLIDLAGLLDR--SIVDEPPV 420
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
R + IK G LD R++ + + + NL RE + +LK+ FN
Sbjct: 421 SVR--------EGGLIKDGYSSELDELRKARTEGKDWIANLQKTERERTGISSLKVGFNK 472
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ I ++ ++P + + N+ T EL A +
Sbjct: 473 VFGYYIEITKANLD-RVPDNYTRKQTLSNSERFITPELKEKEALVLGAEEKINDLEYKLF 531
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR-YTRPHFTENGPLAIDGG 359
+ D +R+++ + A ++ LD++ +++ ++R Y RP +G + I G
Sbjct: 532 VKIRDIVRDNIKRIKKTAAIISKLDVLT-----SLAQNALERDYNRPRINNDGVIEIIKG 586
Query: 360 RHPILESIHND-FIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHP++E + F+PN+ ++ E +I+TGPNMSGKSTY++QV LIV++AQ+G +VPA
Sbjct: 587 RHPVVEDMGKGAFVPNDTYLDLEEERFIIITGPNMSGKSTYMRQVALIVLMAQMGSFVPA 646
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+TI +VDRIFTR+G D+L + STFM EM E A ++ N + SLI++DE+GR TS+
Sbjct: 647 DKATIGIVDRIFTRVGASDDLTTGQSTFMVEMNEVANIVNNATRNSLIILDEVGRGTSTY 706
Query: 478 DGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG +IAW+ E++ + + A T+FA+H L++L P +K ++ V++ + F
Sbjct: 707 DGLSIAWAVSEYINNPDRIGARTLFATHYHELTQLEN-RPGIK--NYNVLVEEDEDGVHF 763
Query: 535 QLKDGP-RHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
K P + YG+ +A++AGLP +I A+ I + + KK
Sbjct: 764 LHKIIPGKASESYGIEVAQLAGLPMEIIIRAQEILAELEKK 804
>gi|26988358|ref|NP_743783.1| DNA mismatch repair protein MutS [Pseudomonas putida KT2440]
gi|386013501|ref|YP_005931778.1| MutS [Pseudomonas putida BIRD-1]
gi|37999632|sp|Q88ME7.1|MUTS_PSEPK RecName: Full=DNA mismatch repair protein MutS
gi|24983109|gb|AAN67247.1|AE016351_9 DNA mismatch repair protein MutS [Pseudomonas putida KT2440]
gi|313500207|gb|ADR61573.1| MutS [Pseudomonas putida BIRD-1]
Length = 857
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 175/587 (29%), Positives = 291/587 (49%), Gaps = 50/587 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D++ +
Sbjct: 266 LDGASRRNLELDINL------AGGRDNTLQSVIDRCQTAMASRLLSRWLNRPLRDLKVLQ 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + + F L L++ + +R+L + NA+
Sbjct: 320 ARQDSIRCLLDSYR-FEKLQPQLKEI-GDIERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + AS+ +R +ID
Sbjct: 363 --DLARLRDALGALPELQNAMTELEAPHLARLAAITGTYPELASLLERA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKAGYDNELDELLAISENAGQFLIDLEAREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P +I+ T EL + + SA R ++ +A
Sbjct: 471 GYFIELPTKQAE-QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDA 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ P F + L I+ GRHP
Sbjct: 530 LLETLISHLAPLQDSAAALAELDVLSNLAERALNLD----LNCPRFVDEPCLRIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLGLDNSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
YGL +A++AG+P+ VI+ AR + + R+E L ++Q
Sbjct: 766 SQ-SYGLAVAQLAGVPTAVIQRAR--------EHLGRLETTSLPHEQ 803
>gi|388602717|ref|ZP_10161113.1| DNA mismatch repair protein MutS [Vibrio campbellii DS40M4]
Length = 853
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 180/580 (31%), Positives = 291/580 (50%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+R+L+ L QP++ ++T+N
Sbjct: 266 LDAATRRNLELTQNLSG---GTDN---TLAEVLDHCATPMGSRMLKRWLHQPMRCVDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD E+ ++ LF + ++ + +R+L + + D A+
Sbjct: 320 NRLDATGEI-KDQSLFTDIQPIFKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V LA+ Y +K A + EV D E +
Sbjct: 367 ------LRHAMQQLPELEAVTSS-----LAHPYL-----KKLAQFAAPLDEVCDLLERAI 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + I G + LD R+ +E + L RE + LK+ +N
Sbjct: 411 KENPPVVIR--EGGVIAEGYNAELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNA 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 469 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAVEKKL- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + ++ + LA + LD++ N S Y RP + ++
Sbjct: 527 ----WEELFDLLMPNLEKMQNLASAISQLDVLQNLAERADSLD----YCRPTLDKEAGIS 578
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + ++ FI N I +S M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 579 IQAGRHPVVEQVTSEPFIANPIELSSNRKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 639 VPAESAHIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 698
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 699 STYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFM 758
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P VI+ AR+ S++ +
Sbjct: 759 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARNKLSQLEQ 797
>gi|448508293|ref|XP_003865918.1| Msh4 protein [Candida orthopsilosis Co 90-125]
gi|380350256|emb|CCG20477.1| Msh4 protein [Candida orthopsilosis Co 90-125]
Length = 787
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 171/581 (29%), Positives = 299/581 (51%), Gaps = 38/581 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ ++R+LE++ L+ GT+ LF L T G RLLR +++QPL ++++
Sbjct: 182 MLIDSCTIRDLELVSSLNGN--GTT-----LFSFLNKCTTKMGQRLLRTSIIQPLMNVDS 234
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL + EL+S E + L+ FP + DR+ F P+ + + +
Sbjct: 235 IKLRLKSVTELLSQENPLLAIKNVLKNFP-DLDRLFASF-LNPESIIGQ----------E 282
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I++I+ LK+ L L L+ +S L + + + +E S I + I++D
Sbjct: 283 QMINNILSLKSTLLLCGELLNCLEKTESPLFVQV-KEILTHENIESALVLIDKFINKDCR 341
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN---LKLP 237
AR Q+ A+K GI+GLLD++R E + ++Y +++ L N ++
Sbjct: 342 SARRSIDVAHQRANAVKSGINGLLDVSR----SVRETILEQVSEYVQKISLENSAVVEYR 397
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
++ +GF+L I FI +++ N C+T++L + R E +
Sbjct: 398 YDKSRGFFLKIKGTAFDN---PDFINIIEKKNGFECTTIDLLKQSSRLGEIIAEINTISS 454
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
I + L + E+ + +++E + +D++ S+A+ +S++ Y P F + + +
Sbjct: 455 IIISELYEQSCENTPIFFMISEAIATVDLLC-SYANFVSSQ-TKSYVCPEFGQY--IHVR 510
Query: 358 GGRHPILESIHNDFIPNNIF-ISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
RHPILE NDF+PN+ + E + I+TG NMSGKS YL+Q+ I+I++Q+G YVP
Sbjct: 511 LSRHPILEKFINDFVPNDYSCVPEISRFQIITGANMSGKSVYLKQIAYILIMSQMGLYVP 570
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++TI+V I +R+ T D + S+F EM E +++N + S I++DELGR +S
Sbjct: 571 ADYATIKVHKSILSRIST-DTTDLTVSSFSNEMTEICRILKNTEQGSFIIIDELGRGSSL 629
Query: 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DGFAI + EHL + A +H + ++E+ V H + N +L+ KF+L
Sbjct: 630 RDGFAICLAILEHLTTTHASVFATTHFKEIAEILGSKSCVLASHMKTIETNGKLESKFKL 689
Query: 537 KDGPRHVPHYGLLLAEVAG-LPSTVIETARSITSRITKKEV 576
+ G + YG+ AE + LP + ++SI + I K +V
Sbjct: 690 ESGKLEIECYGIKYAESSQMLPKEFLAESKSI-ADILKSQV 729
>gi|407716118|ref|YP_006837398.1| Mismatch repair ATPase [Cycloclasticus sp. P1]
gi|407256454|gb|AFT66895.1| Mismatch repair ATPase [Cycloclasticus sp. P1]
Length = 856
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 170/570 (29%), Positives = 288/570 (50%), Gaps = 49/570 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + ++LE+ + N +LF +L KT GTRLLR + PL+D
Sbjct: 268 ITLDAATRQHLEL------DYHPSGNMHFTLFGLLNRCKTTMGTRLLRRWIHLPLRDQSI 321
Query: 61 INTRLDCLDELMSN---EQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
I R +++L + +QL L Q + +R+ +T++ D
Sbjct: 322 IKHRYLAVEQLQTQTIIDQLQASLKQ-----TGDIERITSRIAL----LTARPRD----- 367
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+++L+ L A+P + L + + L + ++ A E++D+
Sbjct: 368 --------LVVLRDTLKAVPAIQNTLANLDAPRLKTLLDQTGNHQTLA-------ELLDK 412
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
++ P + R A G D LD + + + + + K RE ++ LKL
Sbjct: 413 AIVD-NPPVLIRDGGVIA--NGYDEKLDELKNISANADQFLLEIELKEREFSQISTLKLN 469
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N G+Y+ +P + K+P FI+ N T EL + + A + +
Sbjct: 470 YNRVHGYYIEVP-RSQANKVPDYFIRKQTLKNVERYITPELKTFEDKVLHAKEQALSYEK 528
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
AL+ ++ +S L AE L +D++ N FA +T + +P + ++I
Sbjct: 529 ELYNALLLSMAPQLSALQSCAEALAEIDLLTN-FAERAATL---NFNQPSLSNTAGISIK 584
Query: 358 GGRHPILES-IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHPI+ES I FI N+I ++ + M+I+TGPNM GKSTY++Q+ L+ ++A IGCY+P
Sbjct: 585 QGRHPIVESVIDTPFIANDIELNSSQKMLIITGPNMGGKSTYMRQIALLTLMAHIGCYIP 644
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + +D+IFTR+G D+L S STFM EM ETA ++ N S++SL++MDE+GR TS+
Sbjct: 645 ASEAHFGPIDQIFTRIGATDDLASGRSTFMVEMSETANILHNASDKSLVLMDEIGRGTST 704
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C ++L + + +T+FA+H ++ L P K +H + + + F
Sbjct: 705 FDGLSLAWACADYLANKTQPFTLFATHYFEMTSLPESAPTAKNVHLDAIEHGDHIVFLHA 764
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+KDG + YGL +A +AG+P TVI AR
Sbjct: 765 VKDGAAN-QSYGLQVAALAGVPKTVISNAR 793
>gi|187935238|ref|YP_001886016.1| DNA mismatch repair protein MutS [Clostridium botulinum B str.
Eklund 17B]
gi|238691604|sp|B2TIC3.1|MUTS_CLOBB RecName: Full=DNA mismatch repair protein MutS
gi|187723391|gb|ACD24612.1| DNA mismatch repair protein MutS [Clostridium botulinum B str.
Eklund 17B]
Length = 942
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 179/583 (30%), Positives = 296/583 (50%), Gaps = 50/583 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S RNLE+ E + KK SL ++ + T G R LR + +PL +
Sbjct: 259 MTIDGNSRRNLELTESIRE-----KTKKGSLLWVIDKSATSMGGRTLRKWIDEPLIVKDE 313
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL ++E+ ++ G ++ LR KE + +++ K+ + + NAK
Sbjct: 314 IEKRLSGVEEVFNS----IGFNEDLRSALKE--------IYDIERIVGKISNKNVNAK-- 359
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ LK++LD LP + ++LK+ S LL Y ++ E +R + + I ED
Sbjct: 360 -----DLLSLKSSLDKLPCIKELLKNTSSELLKGYYENLDE---LIDVRDLLNDSIKED- 410
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + ++ IK G + L+D R S E + L N+ RE + +LK+ +N
Sbjct: 411 -----PGLG-LKEGNIIKDGYNNLVDELRESKLHGKEWIAALENREREFTGIKSLKVGYN 464
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I + +I+ N T EL + + + E I E
Sbjct: 465 KVFGYYIEISKSNYNSIPEGRYIRKQTLANAERFITEELKVMEDK-ILGSEEKLINLEYS 523
Query: 300 LEALV-DAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR-YTRPHFTENGPLAID 357
+ + D I E++S L A ++ LD I T++ ++ Y +P +G + I
Sbjct: 524 IFVEIRDKIEEEISRLKKSARIISDLDGI-----STLALVALENDYIKPEINTDGLIKII 578
Query: 358 GGRHPILESI--HNDFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E + DF+ NN +++ ++++TGPNM+GKSTY++QV LI ++AQ+G +
Sbjct: 579 DGRHPVVEKVIGKGDFVSNNTALNQTDKELLLITGPNMAGKSTYMRQVALITLMAQMGSF 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I + D+IFTR+G D+L STFM EM E + +++N + SL+++DE+GR T
Sbjct: 639 VPATSANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSNSLVLLDEVGRGT 698
Query: 475 SSSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAWS E++ L+ T+FA+H L +L I P VK V + +
Sbjct: 699 STYDGLSIAWSVIEYITKNKDLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKLKDSVV 758
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
F ++ +G YG+ +A++AGLP VI AR I + K
Sbjct: 759 FLRKIVEGGAD-ESYGIEVAKLAGLPENVINRAREILEDLEGK 800
>gi|281424692|ref|ZP_06255605.1| DNA mismatch repair protein MutS [Prevotella oris F0302]
gi|281401062|gb|EFB31893.1| DNA mismatch repair protein MutS [Prevotella oris F0302]
Length = 886
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 185/582 (31%), Positives = 297/582 (51%), Gaps = 64/582 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D ++R+LE++ P+ SL +++ T T G R+LR L+ PLKD+
Sbjct: 279 VRLDRFTIRSLELVAPMQE-------DGSSLLNVIDRTVTAMGGRMLRRWLVFPLKDVAP 331
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD +D FF +F + ++ RV +++ SKV +
Sbjct: 332 INERLDIVD-------YFFQKPEFRQLIDEQLHRV-----GDLERIISKV------AVGR 373
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDED 178
I+ LK ALDA+ + + +++ L I ++CE SI+ RI + I D
Sbjct: 374 VSPREIVQLKNALDAVRPIKEACLYSENEALKRIGEQLNLCE-----SIKTRIEKEIQLD 428
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+ I G D LD R + + + + K EE + +LK+ F
Sbjct: 429 PPQL-------ITKGDVIADGYDDELDELREMSRNGKDYLLKIQEKEAEETGISSLKVGF 481
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECY 293
NN G+YL + + K+P +I+ T EL L K A E
Sbjct: 482 NNVFGYYLEV-RNTFKDKVPEGWIRKQTLAQAERYITPELKEYEEKILGAEEKILALEAR 540
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ +E+ L A+ D I + LLA V CLL SFA T + Y RP ++
Sbjct: 541 LFSELVL-AMQDFIPQIQINANLLARVDCLL-----SFAKTSEE---NGYIRPQIDDSEV 591
Query: 354 LAIDGGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
L I GRHP++E+ + ++PN++++ ++ ++++TGPNM+GKS L+Q LIV+LA
Sbjct: 592 LDISQGRHPVIETQLPLGERYVPNDVYLDTQKQQIMMITGPNMAGKSALLRQTALIVLLA 651
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+GC+VPA + I +VD+IFTR+G DNL STFM EM E + ++ NVS RSL++ DE
Sbjct: 652 QVGCFVPAERAKIGLVDKIFTRVGASDNLSLGESTFMVEMTEASNILNNVSSRSLVLFDE 711
Query: 470 LGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
LGR TS+ DG +IAW+ E+L +A T+FA+H L+E+ + +K + V
Sbjct: 712 LGRGTSTYDGISIAWAIVEYLHEQPKARARTLFATHYHELNEMEKNFSRIKNYNVSVKEV 771
Query: 527 NNRLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ ++ F +L K G H +G+ +AE+AG+P ++++ A +I
Sbjct: 772 DGKVIFLRKLMKGGSEH--SFGIHVAEIAGMPRSIVKRANAI 811
>gi|443644971|ref|ZP_21128821.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. syringae
B64]
gi|443284988|gb|ELS43993.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. syringae
B64]
Length = 859
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 174/590 (29%), Positives = 289/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLDAPHLQQLAQTASTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIR--DGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 807
>gi|424042871|ref|ZP_17780538.1| DNA mismatch repair protein MutS [Vibrio cholerae HENC-02]
gi|408885865|gb|EKM24573.1| DNA mismatch repair protein MutS [Vibrio cholerae HENC-02]
Length = 853
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 180/580 (31%), Positives = 290/580 (50%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+R+L+ L QP++ ++T+N
Sbjct: 266 LDAATRRNLELTQNLSG---GTDN---TLAEVLDHCATPMGSRMLKRWLHQPMRCVDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF + ++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQSLFTDIQPIFKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V LA+ Y K A + EV D E +
Sbjct: 367 ------LRHAMQQLPELEAVTSS-----LAHPYL-----RKLAQFAAPMDEVCDLLERAI 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + I G + LD R+ +E + L RE + LK+ +N
Sbjct: 411 KENPPVVIR--EGGVIAEGYNAELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNA 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 469 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAVEKKL- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + ++ + LA + LD++ N S Y RP + ++
Sbjct: 527 ----WEELFDLLMPNLEKMQNLASAISQLDVLQNLAERADSLD----YCRPTLDKEAGIS 578
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + ++ FI N I +S M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 579 IQAGRHPVVEQVTSEPFIANPIELSSNRKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 639 VPAESAHIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 698
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 699 STYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFM 758
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P VI+ AR S++ +
Sbjct: 759 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARHKLSQLEQ 797
>gi|194336140|ref|YP_002017934.1| DNA mismatch repair protein MutS [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308617|gb|ACF43317.1| DNA mismatch repair protein MutS [Pelodictyon phaeoclathratiforme
BU-1]
Length = 872
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 182/590 (30%), Positives = 296/590 (50%), Gaps = 61/590 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLEII + GT N SL ++ T+ G RLLR L +PLK ++
Sbjct: 273 MTLDLQTKRNLEIISSMQD---GTQNG--SLLQVIDRTRNPMGARLLRRWLQRPLKRVDE 327
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD + EL ++ LS+ L + +R L +
Sbjct: 328 IRMRLDAVGELSECREMREALSEQLSAI-NDLERCLARIA-----------------TFR 369
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
T+ + L +L A+P+L ++L++A S L + ++ + + I + ID +
Sbjct: 370 TIPREVRQLGLSLSAIPILQELLREAGSARLIALASNL---KPLPELAASIEQAIDPES- 425
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A + I+ G LD R + + + + R + +LK+ FN
Sbjct: 426 ------GASMRDGGYIRTGYHAELDELRTIASTAKDRLLQIQQEERAATTISSLKVSFNK 479
Query: 241 RQGFYLSIPHKDIQGKLPSTF--IQVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
G+Y+ I +I K+P+ + Q + + L E LN KS E +
Sbjct: 480 VFGYYIEISRANID-KVPAYYEKKQTLVNAERYTIPALKEYEEKILNSEEKSFLLEAQLF 538
Query: 296 TEICL--EALVDAIREDVSVLTLLAEV--LCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
++CL AI+E+ + L+AE+ LC + + + Y +P +
Sbjct: 539 HDLCLLIAENASAIQENAA---LIAEIDSLCSFALCASEYG----------YCKPEIMTH 585
Query: 352 GPLAIDGGRHPILE---SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
LAI GGRHP+LE S + ++PN+ E M+I+TGPNM+GKS++L+Q LIV+L
Sbjct: 586 EKLAIVGGRHPVLERMMSAEDPYVPNDCHFDEKQQMLIITGPNMAGKSSFLRQTGLIVLL 645
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ G +VPA + I +VDRIFTR+G DNL S STF+ EM E A ++ N + +SL+++D
Sbjct: 646 AQAGSFVPAERAEIGLVDRIFTRVGASDNLASGESTFLVEMNEAASILNNATSKSLLLLD 705
Query: 469 ELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS+ DG +IAWS E++ S+ A T+FA+H L+EL + P V + VV
Sbjct: 706 EIGRGTSTFDGMSIAWSMSEYICRSIGARTLFATHYHELAELESRLPGVVNYNATVVETA 765
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
+ + F ++ G YG+ +A++AG+P+ VI A+ I + + K++++
Sbjct: 766 DSVIFLRKIIRGSTD-NSYGIEVAKMAGMPAEVISRAKEILAGMEKRDIQ 814
>gi|313125313|ref|YP_004035577.1| DNA mismatch repair protein muts [Halogeometricum borinquense DSM
11551]
gi|448287091|ref|ZP_21478307.1| DNA mismatch repair protein MutS [Halogeometricum borinquense DSM
11551]
gi|312291678|gb|ADQ66138.1| DNA mismatch repair protein MutS [Halogeometricum borinquense DSM
11551]
gi|445572837|gb|ELY27367.1| DNA mismatch repair protein MutS [Halogeometricum borinquense DSM
11551]
Length = 941
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 177/576 (30%), Positives = 288/576 (50%), Gaps = 58/576 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT++R+LE+ E + + R+L +L T G R L A L +P D
Sbjct: 288 LQLDATAIRSLELFESR------SPSGGRTLVGVLDETACALGRRRLTAWLRRPSVDERE 341
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D + EL+ R +ET R + +++ S+V + +
Sbjct: 342 IRRRHDAVGELID------------RPLARETVRDHLSEVYDLERLVSRV------SRER 383
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LDA+P + L + ++ L + S+ E A +R IGE I D
Sbjct: 384 ANARDLRALKTTLDAVPEVKSALSEMETDPLQRLCDSLDE---LADVRDLIGEAIRPDPP 440
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I+ G D LD R + + E V NL + +E + +L++ +N
Sbjct: 441 Q-------EITEGGVIREGFDDELDEIRATEREGREWVSNLEEQEQERTGIDSLEVGYNQ 493
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
G+Y+ + + ++ +P + Q +K+ + L E L+ K+ A E +
Sbjct: 494 VHGYYIEVTNPNLD-SVPDDYTRRQTLKNSERFYTPELKRREDEILSASEKADALEYEVF 552
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
T + + + E+V L LA+ L LD++ A + Y RP + +
Sbjct: 553 TNVRAD-----VAEEVERLQSLADSLATLDVLATFAAVAAAND----YVRPEMGTD-TVE 602
Query: 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
I+ GRHP++E +F+PN S+ ++ ++TGPNMSGKSTY++QV LI ILAQ G +V
Sbjct: 603 IEAGRHPVVERTQGEFVPNPADFSDG-HVAVITGPNMSGKSTYMRQVALIAILAQAGSFV 661
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + + ++DRIFTR+G D++ STFM EM E ++ N +E SL+++DE+GR TS
Sbjct: 662 PARAARLPILDRIFTRVGASDDIAGGQSTFMREMAELTDILHNATEDSLVLLDEVGRGTS 721
Query: 476 SSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVI---RNNRLD 531
++DG AIA + E + + A T+FA+H +L+ L+ P LHF V + D
Sbjct: 722 TTDGLAIARATTEFVHDEVGATTLFATHYHDLTALSERLPEAFNLHFTVEKTERESGEPD 781
Query: 532 FKF--QLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
F ++ DGP YG+ +A++AG+PSTV+E AR
Sbjct: 782 VTFLHRVADGPSSS-SYGVEVAKLAGVPSTVVERAR 816
>gi|422645682|ref|ZP_16708817.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330959231|gb|EGH59491.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 859
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 173/590 (29%), Positives = 289/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLAVLQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSIGCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R
Sbjct: 367 -----DLARLRDALSALPALQQAMTDLDAPHLQQLAQTASTYPELADLLQR--------A 413
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
++ P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 414 INDNPPAVIRDGGV--LKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S++SL++MDE+GR TS+ D
Sbjct: 647 TCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P+ VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPAKVITRA--------KEHLQRLETTSLPHEQ 807
>gi|399890152|ref|ZP_10776029.1| DNA mismatch repair protein MutS [Clostridium arbusti SL206]
Length = 878
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 182/583 (31%), Positives = 303/583 (51%), Gaps = 50/583 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+ID S RNLE+ E L +KK SL +L T T G R LR + QPL D +
Sbjct: 260 MSIDVNSRRNLELTETLRE-----KSKKGSLLWVLDKTSTAMGGRQLRRWIEQPLIDKIS 314
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RLD + E N + L L++ + +++ K+ + NAK+
Sbjct: 315 IEERLDSVQEFTENISVHEDLKNALKQI------------YDIERLVGKISTLSVNAKE- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LK +++ LP + +VLK+ +S LL +Y ++ + K I ++D +
Sbjct: 362 ------LIFLKNSIEKLPKVKEVLKNCKSDLLKKVYTNLDD-------LKDIYNILDTAI 408
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ P V+ ++ IK G + +D R++ E + L + REE + +LK+ +N
Sbjct: 409 SDS--PSVS-VKEGNIIKDGYNNNVDELRQAKSHGKEWIAKLESSEREETSIKSLKVGYN 465
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I ++ +I+ N T EL + + A E I E
Sbjct: 466 KVFGYYIEITKSNLNMVPEGKYIRKQTLANCERYITEELKEMEEK-ILGAEEKLINIEYE 524
Query: 300 LEALV-DAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L A + D I + + + A++L LD + SFA S Y +P+ ++G + I
Sbjct: 525 LFASIRDEISKHIDRMKKSAKLLSELDCLC-SFA---SVALEHNYCKPNVVDSGDIDIHE 580
Query: 359 GRHPILESIHN--DFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E++ + F+ N+ I+ ++++TGPNM+GKSTY++QV LIVI+AQIG +V
Sbjct: 581 GRHPVVENMISVGTFVANDTKINTTDEQLMLITGPNMAGKSTYMRQVALIVIMAQIGSFV 640
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I + D+IFTR+G D+L + STFM EM E + +++N + +SLI++DE+GR TS
Sbjct: 641 PAQDAIISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLIILDEVGRGTS 700
Query: 476 SSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ + +K T+FA+H L+ L + +K ++ + ++ D
Sbjct: 701 TYDGLSIAWSVVEYICTNKDIKCKTLFATHYHELTSLEGVINGLK--NYSIAVKQIEDDI 758
Query: 533 KFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKK 574
F K P YG+ +A++AGLP V A+ I + K+
Sbjct: 759 VFLRKIVPGGADQSYGIEVAKLAGLPEKVTSRAKEILEDLEKE 801
>gi|315221533|ref|ZP_07863453.1| DNA mismatch repair protein MutS [Streptococcus anginosus F0211]
gi|315189367|gb|EFU23062.1| DNA mismatch repair protein MutS [Streptococcus anginosus F0211]
Length = 855
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 181/582 (31%), Positives = 296/582 (50%), Gaps = 58/582 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D +++ +L++ E T K SL+ ++ TKT GTRLLRA + +PL D E
Sbjct: 252 LQMDYSTMASLDLTENAR-----TGKKHGSLYWLMDETKTAMGTRLLRAWIQRPLIDKER 306
Query: 61 INTRLDCLDELMSNEQLFF---GLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
I R D + + + FF LS L+ + +R+ F
Sbjct: 307 IVKRQDVVQVFLDH---FFERSDLSDSLKGV-YDIERLASRVSF---------------- 346
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+T ++ L L +P + +LK S +L ++ + E + A++ I I
Sbjct: 347 -GKTNPKDLLQLAATLSHVPQIKGILKGIDSPVLEDLIAKLDEIPELAAL---IQSAISS 402
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D P V + IK G D LD R D + + ++ K RE + NLK+
Sbjct: 403 DA-----PNV--ITEGNIIKTGFDETLDKYRVVMRDGTSWIADIEAKERETSGINNLKID 455
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGEC 292
+N + G+Y + + ++ +PS F + N+ T ELA L R KSA E
Sbjct: 456 YNKKDGYYFHVTNSQLE-HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEY 514
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
I I EA + + L LA+ L +D ++ SFA T++ K + RP F E
Sbjct: 515 EIFMRIREEA-----GKYIKRLQFLAQTLATVD-VLQSFA-TVAEK--QHFVRPEFIEQR 565
Query: 353 PLAIDGGRHPILESIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ ID GRH ++E + +IPN+I + E N+ ++TGPNMSGKSTY++Q+ +IVI+AQ
Sbjct: 566 SIQIDKGRHAVVEKVMGAQTYIPNSISMDENVNVQLITGPNMSGKSTYMRQLAIIVIMAQ 625
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G YV A + + + D IFTR+G D+L S STFM EM E + +E SLI+ DEL
Sbjct: 626 MGSYVSAESAQLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANHAISQATENSLILFDEL 685
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR T++ DG A+A + E++ + + T+FA+H L+EL+T ++ +H + ++ +
Sbjct: 686 GRGTATYDGMALAQAIIEYIHNRTGSKTLFATHYHELTELSTSLTQLENVHVATLEKDGQ 745
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+ F +++ GP YG+ +A++AGLP+ ++ A I +R+
Sbjct: 746 VTFLHKIEVGPAD-KSYGIHVAKIAGLPNDLLTRADQILTRL 786
>gi|428225913|ref|YP_007110010.1| DNA mismatch repair protein MutS [Geitlerinema sp. PCC 7407]
gi|427985814|gb|AFY66958.1| DNA mismatch repair protein MutS [Geitlerinema sp. PCC 7407]
Length = 892
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 180/589 (30%), Positives = 291/589 (49%), Gaps = 68/589 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLEI + + + SL L T T G+R+LR LLQPL +E I
Sbjct: 312 LDHQSRRNLEITQTVRDGTF-----HGSLLWALDRTVTAMGSRMLRRWLLQPLLKVEAIA 366
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L EL+ N L L LR L + T+ D
Sbjct: 367 QRQETLQELVDNGTLRQDLQALLRDIYD-----LERLAGRAGSGTANARD---------- 411
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L + LP LA ++ +S L + + + +++G + ++ +
Sbjct: 412 ---LVALADSFGRLPDLATLVAQGRSPYLQAL-------QSVPPVLEQLGHTLKAHLVES 461
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P ++ T I+ G++ LD R D ++NL R+ + LK+ +N
Sbjct: 462 --PPLSLTDGNL-IRSGVNADLDTRRSQIEDDQIWINNLEKSERDRTGVSTLKVGYNKTF 518
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE---------CY 293
G+Y+SI ++P +++ N T EL R SA +
Sbjct: 519 GYYISISRAKAD-QVPDNYLRKQTLTNEERYITPELKEREARIFSARDDLNQLEYEIFAA 577
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+RT++ +A A+ V+ A+VLC L + Y RP E
Sbjct: 578 LRTQVGEQA---ALIRQVAQAVAAADVLCGLAEVAVYRG----------YCRPQLGEGRT 624
Query: 354 LAIDGGRHPILES--IHNDFIPNNIFISE----AANMVIVTGPNMSGKSTYLQQVCLIVI 407
+A++ GRHP++E F+PN+ + + A +++++TGPN SGKS YL+QV LI +
Sbjct: 625 IAVEAGRHPVVEQSLPAGFFVPNSTHLGDRGVTAPDLIVLTGPNASGKSCYLRQVGLIQL 684
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+G +VPA +T+ + DRIFTR+G VD+L + STFM EM ETA ++ + + +SL+++
Sbjct: 685 MAQVGSFVPATSATLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATPQSLVLL 744
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
DE+GR T++ DG AIAWS E+L + A TIFA+H L+ELA++ PNV ++ VV++
Sbjct: 745 DEIGRGTATFDGLAIAWSVAEYLAGEIGARTIFATHYHELNELASLLPNVA--NYQVVVK 802
Query: 527 N--NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++ F Q++ G YG+ +AGLP+ VI+ AR + S+I K
Sbjct: 803 ELPDQIVFLHQVQPGGADR-SYGIEAGRLAGLPAVVIQRARQVMSQIEK 850
>gi|448317602|ref|ZP_21507152.1| DNA mismatch repair protein MutS [Natronococcus jeotgali DSM 18795]
gi|445602993|gb|ELY56963.1| DNA mismatch repair protein MutS [Natronococcus jeotgali DSM 18795]
Length = 884
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 176/574 (30%), Positives = 288/574 (50%), Gaps = 48/574 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA ++R+LE+ EP + + +L +L T + G R LR L +PL + E I
Sbjct: 284 LDAVALRSLELFEPRAV----RAREDATLIDVLDETASALGGRALRDWLRRPLLEPERIE 339
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++EL + L + LR + +++ ++ + +
Sbjct: 340 ARLDAVEELTGAVRRREQLHELLRD------------VYDLERLIGRI------SRERAN 381
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ L +P + L DA L + E + A +R E+ID+ V+
Sbjct: 382 ARDLRSLRDTLAVVPEIRDRLADADCARLRELRE---ELDPLADVR----ELIDDAVVAD 434
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + T+ + G D LD R + D + + +L + RE + +LK+ +N+
Sbjct: 435 --PPIEITEGGI-VAEGYDADLDELRGTARDGKQWIDDLEARERERTGIDSLKVGYNSVH 491
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + +++ +P + + N+ T EL R G E+ E
Sbjct: 492 GYYIEVTNPNLEA-VPEDYQRRQTLKNSERFVTPELKE---REDEIVGAEERADELEYEL 547
Query: 303 LVD---AIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE-NGPLAID- 357
+ A+ ++V + LA+ L +D +V S A T++ + Y RP + + L ID
Sbjct: 548 FCEVRSAVADEVERVQALADALATVDALV-SLA-TVAAQY--DYCRPEIRDRDADLEIDI 603
Query: 358 -GGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E F+PN +S + ++TGPNMSGKSTY++QV IV+LAQ+G +VP
Sbjct: 604 EGGRHPVVERTQESFVPNGASLSPDRRLAVITGPNMSGKSTYMRQVAQIVLLAQVGSFVP 663
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I VDRIFTR+G D++ STFM EM E A +++ ERSL+++DE+GR TS+
Sbjct: 664 AESARISPVDRIFTRVGASDDIAGGRSTFMVEMDELATILREADERSLVLLDEVGRGTST 723
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
+DG AIA + EHL + A T+FA+H L+ELA P LHF V R + F +
Sbjct: 724 ADGLAIARAITEHLHDEVGAPTLFATHHHPLTELAEALPAAFTLHFQVEQREGEVVFHHE 783
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
+ G YG+ +A AG+P V+E +R + +
Sbjct: 784 IAPGA-ATGSYGVEVATAAGVPEDVVERSRELVA 816
>gi|421490293|ref|ZP_15937667.1| DNA mismatch repair protein MutS [Streptococcus anginosus SK1138]
gi|400373698|gb|EJP26626.1| DNA mismatch repair protein MutS [Streptococcus anginosus SK1138]
Length = 853
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 182/582 (31%), Positives = 297/582 (51%), Gaps = 58/582 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D +++ +L++ E T K SL+ ++ TKT GTRLLRA + +PL D E
Sbjct: 250 LQMDYSTMASLDLTENAR-----TGKKHGSLYWLMDETKTAMGTRLLRAWIQRPLIDKER 304
Query: 61 INTRLDCLDELMSNEQLFF---GLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
I R D + + + FF LS L+ + +R+ F
Sbjct: 305 IVKRQDVVQVFLDH---FFERSDLSDSLKGV-YDIERLASRVSF---------------- 344
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+T ++ L L +P + +LK S +L ++ + E + A++ I I
Sbjct: 345 -GKTNPKDLLQLAATLSHVPQIKGILKGIDSPVLEDLIAKLDEIPELAAL---IQSAISS 400
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D P V + IK G D LD R D + + ++ K RE + NLK+
Sbjct: 401 DA-----PNV--ITEGNIIKTGFDETLDKYRVVMRDGTSWIADIEAKERETSGINNLKID 453
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGEC 292
+N + G+Y + + ++ +PS F + N+ T ELA L R KSA E
Sbjct: 454 YNKKDGYYFHVTNSQLE-HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEY 512
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
I I EA + + L LA+ L +D ++ SFA T++ K + RP F E
Sbjct: 513 EIFMRIREEA-----GKYIKRLQSLAQTLATVD-VLQSFA-TVAEK--QHFVRPEFIEQR 563
Query: 353 PLAIDGGRHPILESIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ ID GRH ++E + + +IPN+I + E N+ ++TGPNMSGKSTY++Q+ +IVI+AQ
Sbjct: 564 SIQIDKGRHAVVEKVMSAQTYIPNSISMDENVNVQLITGPNMSGKSTYMRQLAIIVIMAQ 623
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G YV A + + + D IFTR+G D+L S STFM EM E + +E SLI+ DEL
Sbjct: 624 MGSYVSAESAQLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANHAISQATENSLILFDEL 683
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR T++ DG A+A + E++ + A T+FA+H L+EL+T ++ +H + ++ +
Sbjct: 684 GRGTATYDGMALAQAIIEYIHNRTGAKTLFATHYHELTELSTSLTQLENVHVATLEKDGQ 743
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+ F +++ GP YG+ +A++AGLP+ ++ A I +R+
Sbjct: 744 VTFLHKIEVGPAD-KSYGIHVAKIAGLPNDLLTRADQILTRL 784
>gi|164688070|ref|ZP_02212098.1| hypothetical protein CLOBAR_01715 [Clostridium bartlettii DSM
16795]
gi|164602483|gb|EDQ95948.1| DNA mismatch repair protein MutS [Clostridium bartlettii DSM 16795]
Length = 957
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 169/587 (28%), Positives = 304/587 (51%), Gaps = 45/587 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + NLE+ E + T KK SL H+L T T G R+LR + +PL D +
Sbjct: 265 MVLDMFTRSNLELTETIR-----TKKKKGSLLHVLDKTSTAMGGRMLRKYVEEPLVDKKR 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++E+ + L L + L+ + +R+ F+ KVT K L
Sbjct: 320 IQNRLDVIEEIKDDYSLRIDLIEILKNV-YDIERICGKIAFE--KVTPKEL--------- 367
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I LK +++ LP L + ++D+ + +L N YA + + ++ D +
Sbjct: 368 ------INLKNSIEKLPELKRRIEDSDAEILKN----------YAGKMETLDDIYDL-ID 410
Query: 181 HARVPFVART-QQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
A +P + T + I+ + L R + + + + N+ +E+ + +LK+ FN
Sbjct: 411 RAILPEPSITIKDGNIIQSSYNEELRELREVSTNGAFMIKEIENREKEKTGVKSLKIGFN 470
Query: 240 NRQGFYLSIPHKDIQ-GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+Y+ I ++ + ++I+ N T EL + + A + +
Sbjct: 471 KVFGYYIEITKANLATANIDDSYIRKQTLSNAERYITEELKIIEDKILHAKEKIGVLEYE 530
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ I +++ + +A+++ +D + SFA + ++ Y +P+ +N L I
Sbjct: 531 LFVQVRKYIYDNIDRIQNVAKIIANID-VFTSFA---TVADLNNYVKPNINDNNKLDIKN 586
Query: 359 GRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E+I +F+PN+ ++S+ N++ I+TGPNM+GKSTY++Q +IV++A +G +V
Sbjct: 587 GRHPVVENIVGEENFVPNDTYLSDDENIINIITGPNMAGKSTYMRQSAIIVLMAHMGSFV 646
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA F+ I + DRIFTR+G D+L S STFM EM E + +++N + +S +++DE+GR TS
Sbjct: 647 PADFADIPICDRIFTRVGASDDLSSGQSTFMVEMNEVSQILKNATSKSFVILDEIGRGTS 706
Query: 476 SSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG ++AW+ E++ S +K T+FA+H L++L + VK V + F
Sbjct: 707 TYDGISLAWAIVEYIQSNIKCKTLFATHYHELTDLENEFREVKNYSISVKDDGENIIFLR 766
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
++ + P YG+ +A++A LP VIE + I S + K + E+
Sbjct: 767 KIVEQPAD-KSYGIYVAKLAKLPDQVIERSSEILSDLEKNHIFNGEV 812
>gi|424071222|ref|ZP_17808648.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|407999155|gb|EKG39542.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
Length = 859
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 174/590 (29%), Positives = 289/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMSDLDAPHLQQLAQTASTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIR--DGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 807
>gi|422664943|ref|ZP_16724816.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|330975362|gb|EGH75428.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 859
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 174/590 (29%), Positives = 289/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLDAPHLQQLAQTASTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIR--DGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 807
>gi|427722904|ref|YP_007070181.1| DNA mismatch repair protein MutS [Leptolyngbya sp. PCC 7376]
gi|427354624|gb|AFY37347.1| DNA mismatch repair protein MutS [Leptolyngbya sp. PCC 7376]
Length = 885
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 181/585 (30%), Positives = 292/585 (49%), Gaps = 55/585 (9%)
Query: 1 MNIDATSVRNLEIIEPLH-SALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
+ +D + RNLEI + + +L+G SL L T T G R LR LLQPL D E
Sbjct: 306 LQLDHQTRRNLEITQTIRDGSLYG------SLLWALDVTNTNMGGRALRRWLLQPLLDPE 359
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKK 118
I R D ++EL+ N L + L++ + +++ ++ NA+
Sbjct: 360 AIAERFDTIEELVENTNLRQDVRHVLKQI------------YDLERIAGRIGSGSANAR- 406
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+ L +L L LA++++DA+S L + + +K + + ++D
Sbjct: 407 ------DLYALAESLTKLSYLAEIVEDAKSPYLQAVQNFPPDLDKLG--KHVLTYLVDSP 458
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+H + + I+ G+D LD RRS + E + NL RE + LK+ +
Sbjct: 459 PIHIKDGGI--------IRDGVDEELDHLRRSQVEDREWLANLEITERERTGVSKLKVGY 510
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTE 297
N G+Y+S+P + P +++ N T EL R +A + C + E
Sbjct: 511 NKTFGYYISMPRSQ-SAQAPEEYLRKQTLSNEERYITPELKERESRILTAKDDICKLEYE 569
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
I E +R V+ T ++ A + T Y RP L I+
Sbjct: 570 IFTE-----LRGTVAEHTDTIRAAAGAIAAIDVLAAFVETAVYQDYCRPVIGSTKNLEIE 624
Query: 358 GGRHPILESI--HNDFIPNNIFISEAAN-----MVIVTGPNMSGKSTYLQQVCLIVILAQ 410
GRHP++E F+ N+ + +A N ++I+TGPN SGKS YL+Q LI ++AQ
Sbjct: 625 QGRHPVVEKSLGMGLFVSNSTNLGKAKNIKNPDLIILTGPNASGKSCYLRQTGLIQLMAQ 684
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G ++PA +TI + DRIFTR+G VD+L + STFM EM ETA ++ + +E+SLI++DE+
Sbjct: 685 VGSFIPAKSATIPICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATEKSLILLDEI 744
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR T++ DG +IAW+ EH+ + +KA TIFA+H L+EL++I NV +F V ++
Sbjct: 745 GRGTATFDGLSIAWAVAEHIATEVKAKTIFATHYHELNELSSILLNVS--NFQVTVKELP 802
Query: 530 LDFKFQLKDGPRHV-PHYGLLLAEVAGLPSTVIETARSITSRITK 573
+ F K P YG+ +AGLP++VI A+ + ++I K
Sbjct: 803 EEIIFLHKVQPGGADKSYGIEAGRLAGLPTSVITRAKQVMTQIEK 847
>gi|312884633|ref|ZP_07744336.1| DNA mismatch repair protein MutS [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367725|gb|EFP95274.1| DNA mismatch repair protein MutS [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 858
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 180/573 (31%), Positives = 288/573 (50%), Gaps = 59/573 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L + +L +L T T G+R+L+ L QP++DI ++
Sbjct: 269 LDAATRRNLEITQNL------AGGNENTLAEVLDKTATPMGSRMLKRWLHQPMRDIRVLD 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E FG + K + +R+L + +
Sbjct: 323 QRLDAISEL--KELSSFGEIGPILKQIGDIERILARLALRSARP---------------- 364
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ AL LP L++ ++ + N Y +K A + I V E+ +
Sbjct: 365 -RDLARLRFALQQLPDLSESMES-----MTNSYL-----KKLAEYAQPIDNVCSLLENAI 413
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R I+ G + LD R+ +E + L RE + +LK+ +NN
Sbjct: 414 KENPPVVIR--DGGVIQEGYNTELDEWRKLADGATEYLDKLEQDERERHGIDSLKVGYNN 471
Query: 241 RQGFYLSIPHKDIQGKL-PSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYI 294
GF++ + Q L P ++ Q +K+ S L E LN R+K+ A E +
Sbjct: 472 VHGFFIQVSRG--QSHLVPPHYVRRQTLKNAERYIISELKEHEDKVLNSRSKALALEKQL 529
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
E L D + + + LA + LD++ N A T +D Y RP + +
Sbjct: 530 -----WEELFDLLLPHLEKMQNLASAISQLDVLQN-LAERADT--LD-YCRPELATDTGI 580
Query: 355 AIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I+ GRHP++E + ++ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG
Sbjct: 581 DIEAGRHPVVEQVLDEPFIANPITLNCERKMLIITGPNMGGKSTYMRQTALIALMAHIGS 640
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA +TI +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR
Sbjct: 641 FVPAQSATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKHSLVLMDEIGRG 700
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+ E L + + T+FA+H L+EL + P + +H + + + F
Sbjct: 701 TSTFDGLSLAWASAEWLAKEIGSMTLFATHYFELTELPNLVPGLSNIHLDAIEHGDSIAF 760
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++G + YGL +A +AG+P VI+ AR
Sbjct: 761 MHAVQEGAAN-QSYGLAVAGLAGVPKNVIKNAR 792
>gi|397690923|ref|YP_006528177.1| DNA mismatch repair protein MutS [Melioribacter roseus P3M]
gi|395812415|gb|AFN75164.1| DNA mismatch repair protein MutS [Melioribacter roseus P3M]
Length = 872
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 182/594 (30%), Positives = 303/594 (51%), Gaps = 58/594 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLEI+ + S ++ SL +L T T G RLL+ + PLK +E
Sbjct: 264 MALDYATKRNLEILFTIQSG-----EREGSLISILDKTSTSMGGRLLKRWITTPLKKLEP 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R +C++EL N+ L L + L + + +R++ C T ++ N ++
Sbjct: 319 ILKRQECVEELFENKSLRKNLREELSEI-GDIERLIARAC------TGRI----NPRE-- 365
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I LK +L + L+ ++L + + L I N+ + + + ++ E+ +
Sbjct: 366 -----VINLKNSLKKIHLIKQLLDQSSAETLRQI------NDNMNPLEELVAKI--ENAI 412
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P A IK G + LD R + E + NL + R++ + +LK+ +N
Sbjct: 413 NEEPP--ASLHDGGVIKPGYNPELDELRSLAFNAKEWIANLQKEERQKTGVSSLKVSYNK 470
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYIR 295
G+Y+ I H + + K+P+ +I+ N+ T EL LN ++ A E
Sbjct: 471 VFGYYIEISHAN-KDKVPAHYIRKQTLVNSERYITPELKEYEEKILNAQDNIAKLEF--- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
L + IR ++ T + L +++ F Y +P ++ +
Sbjct: 527 ------ELFEQIRYQIAAATERVQTNARLIAMLDCFLSFAECAEQYNYVKPTVDDSDVID 580
Query: 356 IDGGRHPILESI---HNDFIPNNIFISEAANMVIV-TGPNMSGKSTYLQQVCLIVILAQI 411
I GRHP++E I F PN+ +S + + +I+ TGPNM+GKS YL+Q+ LIV++AQI
Sbjct: 581 IVDGRHPVVEQILPPGEKFTPNSCRLSSSEDQIIILTGPNMAGKSVYLRQIGLIVLMAQI 640
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G YVPA + I +VDRIFTR+G DN+ + STF+ EM+E A ++ N + +SLI++DE+G
Sbjct: 641 GSYVPAKEARIGIVDRIFTRVGASDNITTGESTFLVEMQEAANILNNATNKSLILLDEIG 700
Query: 472 RATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
R TS+ DG +IAW+ E+L + A T+FA+H L+E+A I+P +K ++ V +R
Sbjct: 701 RGTSTFDGISIAWAITEYLHENPEIAAKTLFATHYHELNEMAEIFPRIK--NYKVDVREY 758
Query: 529 RLDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
F K P H YG+ +A++AGLP V A+ I + KE+ EI
Sbjct: 759 GDKVIFLHKVKPGGADHSYGIQVAQMAGLPVYVTNRAKEILLNLESKELTPYEI 812
>gi|326791330|ref|YP_004309151.1| DNA mismatch repair protein MutS [Clostridium lentocellum DSM 5427]
gi|326542094|gb|ADZ83953.1| DNA mismatch repair protein MutS [Clostridium lentocellum DSM 5427]
Length = 915
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 186/582 (31%), Positives = 300/582 (51%), Gaps = 49/582 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLE+ E L +K SL +L TKT G+R +R + QPL + E
Sbjct: 272 MLLDIATRRNLELTETLRE-----KRRKGSLLWVLDHTKTAMGSRYIRKCIEQPLINAEE 326
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKS 119
IN RLD EL L L + L D + + +++ SKV NAK
Sbjct: 327 INHRLDATKELKEAPLLRADLFEAL-------DHI-----YDIERLMSKVSFGTCNAK-- 372
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVIDED 178
+I LK +L+ LP + +L D Q+ L ++ R + + ++ Y + K + E
Sbjct: 373 -----DMIALKQSLEVLPTIKGLLVDCQAPGLISLNRQLDDMSDLYQLVDKALIE----- 422
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P R + IK G + +D R+ + + + + + +E+ + NLK+ +
Sbjct: 423 ----EAPISVR--EGNMIKTGYNEEVDHLRQVKTEGASWLMEIEAREKEKTGIKNLKIKY 476
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G++L + + +P FI+ N T EL + A + +
Sbjct: 477 NKVFGYFLEVT-QSYNHLVPDYFIRKQTLSNCERYITEELKKVEEEVLGADDKLNLLEYQ 535
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ DA+ +++ L + + LDM S A T Y +P T L I+
Sbjct: 536 LFTEIRDAVLKEMPRLLTTSAQIAALDMFC-SLADVADTYG---YVKPEMTTGYNLCIEK 591
Query: 359 GRHPILESIHND--FIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + + FI N++ + E A M+++TGPNM+GKSTY++QV LIV++AQIG +V
Sbjct: 592 GRHPVVEKMLGEQHFIANDVILEEEHAEMMLLTGPNMAGKSTYMRQVALIVLMAQIGSFV 651
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA +TI VVDRIFTR+G D+L S STFM EM E A ++ + ++ SL+++DE+GR TS
Sbjct: 652 PADSATIGVVDRIFTRVGASDDLASGQSTFMVEMMEVANILHHATKNSLLILDEIGRGTS 711
Query: 476 SSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IAWS EH+ + + A T+FA+H L+ L PN+K ++ + ++ D F
Sbjct: 712 TLDGLSIAWSIIEHITTEIGAKTLFATHYHELTVLEETMPNLK--NYCIAVKEIGEDIIF 769
Query: 535 QLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ V H YG+ +A++AG+PS V+E A++I ++ E
Sbjct: 770 LHQIVKGSVDHSYGIQVAKLAGVPSAVLERAKAILKQLDSGE 811
>gi|373456284|ref|ZP_09548051.1| DNA mismatch repair protein mutS [Caldithrix abyssi DSM 13497]
gi|371717948|gb|EHO39719.1| DNA mismatch repair protein mutS [Caldithrix abyssi DSM 13497]
Length = 884
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 197/599 (32%), Positives = 298/599 (49%), Gaps = 78/599 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++ RNLEI E + G N +L H + T T G RL + + QPL D+E
Sbjct: 272 MVLDESTRRNLEISESISGG--GVRN---TLLHFIDFTITPMGARLFKQWIQQPLLDMEE 326
Query: 61 INTRLDCLDELMSN----EQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNA 116
IN RLD + EL+ + EQL L Q +T+R+L + VL++ +
Sbjct: 327 INHRLDIVSELVGDAPLREQLAAELKQIF-----DTERLLGKIVTN-RANARDVLNLGQS 380
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
K I +II +T D L + + S L I R++ EN I + G +I
Sbjct: 381 LKQIVPIKAIID-QTTCDTLKAHFQSFQILDS-LTEKIDRAIVEN---PPITLQEGGII- 434
Query: 177 EDVLHARVPFVARTQQCFAI-KGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
R + A + AI + G D LL +R RE + LK
Sbjct: 435 ------RAGYHAELDELRAISEQGKDWLLAYQQRE---------------RERTGISTLK 473
Query: 236 LPFNNRQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
+ +N G+Y+ + HKD K+P +++ N T EL +K E
Sbjct: 474 VNYNKVFGYYIEVTNVHKD---KIPPEYVRKQTLVNAERFITQELKEWE--DKILGAEEK 528
Query: 294 IRTEICLE-ALVDAIREDVSVLT--------LLAEVLCLLDMIVNSFAHTISTKPVDRYT 344
I LE L IRE+V L+AE+ C L + + + Y
Sbjct: 529 INE---LEYRLFQEIREEVGRYVEPIQLNSRLIAELDCFLSLAQAAIENN--------YV 577
Query: 345 RPHFTENGPLAIDGGRHPILESI---HNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQ 400
RP ++ L I GRHP++E DFI N+ ++ ++ + I+TGPNM+GKST+L+
Sbjct: 578 RPEIDDSRALEIREGRHPVVEKTLPPGEDFIANDAYLDPDSEQIWIITGPNMAGKSTFLR 637
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LIV++AQIG YVPA + I +VDRIFTR+G DNL S STF+ EM ETA ++ N +
Sbjct: 638 QVGLIVLMAQIGSYVPAAKARIGIVDRIFTRVGASDNLASGESTFLVEMNETANILNNAT 697
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVK 517
RSLI++DE+GR TS+ DG +IAW+ E++ L+ T+FA+H L+ELA +YP +K
Sbjct: 698 PRSLILLDEIGRGTSTFDGLSIAWAVAEYIYREPRLRCKTLFATHYHELTELALLYPRIK 757
Query: 518 ILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ V +++ F ++ G YG+ +A++AGLP+ +I A+ I + + E+
Sbjct: 758 NYNVAVEEWKDQVIFLRKIVPGGSD-NSYGIYVAQMAGLPAPLIARAKEILTNLEANEL 815
>gi|424066568|ref|ZP_17804032.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|408002167|gb|EKG42430.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
Length = 846
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 174/590 (29%), Positives = 289/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 257 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 310
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 311 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 353
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R +ID
Sbjct: 354 -----DLARLRDALSALPELQQAMTDLDAPHLQQLAQTASTYPELADLLQRA--IIDNP- 405
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 406 -----PAVIR--DGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYN 458
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 459 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 517
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 518 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 573
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 574 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 633
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 634 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 693
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 694 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHRVLP 753
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 754 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 794
>gi|167745632|ref|ZP_02417759.1| hypothetical protein ANACAC_00324 [Anaerostipes caccae DSM 14662]
gi|167654944|gb|EDR99073.1| DNA mismatch repair protein MutS [Anaerostipes caccae DSM 14662]
Length = 872
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 182/590 (30%), Positives = 292/590 (49%), Gaps = 61/590 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID++S RNLE+ E L KK SL +L TKT G RLLR+ + QPL D
Sbjct: 267 MIIDSSSRRNLELCETLRD-----KKKKGSLLGVLDKTKTAMGARLLRSMIEQPLIDRVK 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D L L + +E R + + +++ +KV Q
Sbjct: 322 IEERYDALTSLTK------------QAIAREEIREYLNPVYDLERLMTKV-------SYQ 362
Query: 121 TL-ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
T+ +I LK +L LP + +L++ LL+ + + E A + ED
Sbjct: 363 TINPRDMIALKVSLQWLPPIKTILEECGDSLLSGLREDLDTLEDVAGLL--------EDA 414
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ P + + IK G +D +R+ D + + L + R + LK+ FN
Sbjct: 415 ILEEPPIAVK--EGGIIKDGFSEQIDQLKRAKTDGKQWLMQLEERERRATGIKTLKVKFN 472
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAA--GEC 292
G+YL + + + K+P +I+ N+ +T EL L ++ A E
Sbjct: 473 KVFGYYLDVTNS-YKDKVPEHYIRKQTLTNSERYTTEELNKLADTILGAEDRLCALEYET 531
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
+ L ++ I++ V+ L +VLC L + + Y RP G
Sbjct: 532 FASIRETLAGEMERIKKTAGVIAYL-DVLCSLACVAEQ----------NGYVRPKLNTKG 580
Query: 353 PLAIDGGRHPILESI-HND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILA 409
+ I GRHP++E + ND FI N+ ++ + V I+TGPNM+GKSTY++Q LIV++A
Sbjct: 581 LIDIKEGRHPVVEQMMSNDMFISNDTYLDSKRHRVSIITGPNMAGKSTYMRQSALIVLMA 640
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
QIG +VPA + I +VDRIFTR+G D+L S STFM EM E A +++N ++ SL+++DE
Sbjct: 641 QIGSFVPAQKANIGIVDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATKDSLLILDE 700
Query: 470 LGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
+GR TS+ DG +IAW+ E++ + L A T+FA+H L+EL +V V +
Sbjct: 701 IGRGTSTYDGLSIAWAVVEYISNPKLLGAKTLFATHYHELTELEGKIGSVNNYCIAVKEQ 760
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ + F ++ G YG+ +A++AG+P VI+ A+ I S ++ ++
Sbjct: 761 GDNIVFLRKIVKGGAD-KSYGIQVAKLAGVPDMVIQRAKEIVSELSDSDI 809
>gi|238927479|ref|ZP_04659239.1| DNA mismatch repair protein MutS [Selenomonas flueggei ATCC 43531]
gi|238884761|gb|EEQ48399.1| DNA mismatch repair protein MutS [Selenomonas flueggei ATCC 43531]
Length = 860
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 179/580 (30%), Positives = 292/580 (50%), Gaps = 63/580 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++RNLEI L KK +LF +L T+T GTRLL+A L PL
Sbjct: 262 MQLDTYTLRNLEITRSLRDG-----GKKNTLFDVLDFTRTPMGTRLLKAWLEHPLLTPHR 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RLD + EL+ L ++ R H + +++ +++ ++Q
Sbjct: 317 IDARLDAVAELVEKSTL------------RDALRDALHTVYDFERLLTRI-------ETQ 357
Query: 121 TL-ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE-VIDED 178
T ++ L+ +L ALP + L A S LL R+ E E + ++R + ++DE
Sbjct: 358 TANARDLVALRISLAALPAVRACLAAAVSRLLV---RAAGEIETFDALRDELTHALVDEP 414
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
L R + I+ G D LD RR D+ + + + R + LK+ +
Sbjct: 415 GLSVR--------EGGMIRAGYDADLDELRRFSHDSKSLLQEMEERERTRTGIKTLKIGY 466
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECY 293
N G+Y+ + H + ++P +I+ N T EL + L K A E +
Sbjct: 467 NKVFGYYIEVRHSG-RDQVPEGYIRKQTLANTERFITEELKNFEAKILGAEEKITALEYH 525
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ TE L + +RE + + +A + +D++ + A S RY RP +G
Sbjct: 526 LFTE-----LRERVREQLVPIQGVARAIARVDVLQSLAAAAASY----RYVRPTVGADGG 576
Query: 354 LAIDGGRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I GRHP++E I + F+PN+ +S +++TGPNM+GKSTY++QV L+ ++AQ
Sbjct: 577 IRIRDGRHPLVERILQRDVFVPNDTELSHGGTETMLITGPNMAGKSTYMRQVALLTLMAQ 636
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G +VPA + I VDRIFTR+G D+L S STFM EM E A +++ + SL+++DE+
Sbjct: 637 VGSFVPARTAEIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLVILDEI 696
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG +IA + EH+ + A T+FA+H L+E+ N +I ++ + +R
Sbjct: 697 GRGTSTFDGMSIARAVVEHIDGRIHAKTLFATHYHELTEM----ENERIRNYCIAVREKG 752
Query: 530 LDFKF--QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ F ++ G YG+ +A +AGLP V E A I
Sbjct: 753 KNVVFLRRIVAGAAD-KSYGIHVARLAGLPQRVTERAEEI 791
>gi|66044624|ref|YP_234465.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. syringae
B728a]
gi|81308440|sp|Q4ZWP5.1|MUTS_PSEU2 RecName: Full=DNA mismatch repair protein MutS
gi|63255331|gb|AAY36427.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. syringae
B728a]
Length = 859
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 174/590 (29%), Positives = 289/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMSDLDAPHLQQLAQTAGTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 807
>gi|433590929|ref|YP_007280425.1| DNA mismatch repair protein MutS [Natrinema pellirubrum DSM 15624]
gi|448334462|ref|ZP_21523637.1| DNA mismatch repair protein MutS [Natrinema pellirubrum DSM 15624]
gi|433305709|gb|AGB31521.1| DNA mismatch repair protein MutS [Natrinema pellirubrum DSM 15624]
gi|445619794|gb|ELY73311.1| DNA mismatch repair protein MutS [Natrinema pellirubrum DSM 15624]
Length = 910
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 176/585 (30%), Positives = 288/585 (49%), Gaps = 65/585 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA ++R+LE+ EP + G + +L +L T + G R LR L +PL + + I
Sbjct: 302 LDAVALRSLELFEP--RTVHGRDDA--TLVGVLDETASALGGRKLRDWLRRPLLEPDRIE 357
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ELM Q L + LR + +++ ++ + +
Sbjct: 358 ARLDAVEELMGAVQTRERLHELLRD------------VYDLERLIGRI------SRERAN 399
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ L +P + + L DA L ++ ++ + A +R E+ID D + A
Sbjct: 400 ARDLRSLRDTLAVVPEVREELADADCGRLRRLHDAL---DPLADVR----ELID-DAVVA 451
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + I G D LD R + D + + +L + RE + +LK+ +N+
Sbjct: 452 DPPI--EITEGGVIAEGYDADLDDLRGTARDGKQWIDDLEERERERTGIDSLKVGYNSVH 509
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGE------CY 293
G+Y+ + + +++ +P + + N+ T EL V + A E C
Sbjct: 510 GYYIEVTNPNLE-SVPENYQRRQTLKNSERFVTPELKEREDEIVGAEERADEREYELFCE 568
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+R E+ E V + LAE L LD +V S A + Y RP E G
Sbjct: 569 VRREVAAE---------VERVQRLAEALATLDALV-SLATAAAQYD---YCRPEIIERGG 615
Query: 354 --------LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405
L I+GGRHP++E F+PN+ ++ + ++TGPNMSGKSTY++QV I
Sbjct: 616 GADSDGRVLEIEGGRHPVVERTQESFVPNDADFTDDRRLAVITGPNMSGKSTYMRQVAQI 675
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
V+LAQ+G +VPA + + VDRIFTR+G D++ STFM EM E A +++ E +L+
Sbjct: 676 VLLAQVGSFVPASAARLTPVDRIFTRVGASDDIAGGRSTFMVEMDELATILREADENALV 735
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
++DE+GR TS++DG AIA + EHL + A T+FA+H L+ELA LHF V
Sbjct: 736 LLDEVGRGTSTADGMAIAQAITEHLHDRVGATTLFATHHHPLTELADDLAAAFTLHFEVE 795
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
+ + F ++ G YG+ +A AG+P +V++ AR + +
Sbjct: 796 QVDGEVVFHHEIAPGA-ATGSYGVEVATAAGVPDSVVDRARELVA 839
>gi|344940515|ref|ZP_08779803.1| DNA mismatch repair protein mutS [Methylobacter tundripaludum SV96]
gi|344261707|gb|EGW21978.1| DNA mismatch repair protein mutS [Methylobacter tundripaludum SV96]
Length = 856
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 170/566 (30%), Positives = 283/566 (50%), Gaps = 43/566 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA+S RNLE+ + + +LF +L T T G+R LR + +PL+D + +N
Sbjct: 271 LDASSRRNLEL------DFHPSGQLQYTLFGVLDKTATAMGSRCLRRWINRPLRDHDILN 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R C+D L+ N L+ + LR+ + +R+ K +
Sbjct: 325 NRYACIDTLL-NVLLYRDIQSHLRQV-GDIERISSRIALKSARP---------------- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+++L+ L LP L L D + LA + + E+ + + + +ID
Sbjct: 367 -RDLLVLRNTLAVLPALQHALSDGDNPQLAQLCGQIGEHPEMLKLLQ--SAIIDNP---- 419
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G LD R + + + ++ N+ + + LK+ +N
Sbjct: 420 --PVLIRDGGVIA--PGYHPELDELRNLSQNADQFLIDMENREKATTGISTLKVNYNRVH 475
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I + + K+P+ + + T EL S + SA + + E
Sbjct: 476 GYYIEISNLHSE-KVPTHYTRKQTLKGAERYITEELKSFEDKVLSAKEKSLSFEKALYEE 534
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ I + L A L LD++VN FA T ++P + + I+ GRH
Sbjct: 535 LLNIIGASLIPLQQCAAALAELDVLVN-FAERAETL---NLSQPKLVDQPGITIEAGRHL 590
Query: 363 ILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + + F+PN++ S M+++TGPNM GKSTY++Q LIV++A IGCYVPA
Sbjct: 591 VVEQVSDIPFVPNDLSFSSNRRMLVITGPNMGGKSTYMRQAALIVLIAHIGCYVPAKSLA 650
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
VD+IFTR+G D+L S STFM EM ETA ++ N + +SLI+MDE+GR TS+ DG +
Sbjct: 651 CGPVDKIFTRIGASDDLSSGRSTFMVEMSETANILHNATSKSLILMDEIGRGTSTFDGLS 710
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+C +HL +A+T+FA+H L+ L + +H + +++ F +KDGP
Sbjct: 711 LAWACADHLAKETQAFTLFATHYFELTTLPEEQKTIHNVHLDAMEHGDKIIFLHAVKDGP 770
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARS 566
YGL +A +AG+P +VI+ A++
Sbjct: 771 AS-QSYGLQVASLAGVPRSVIDKAKA 795
>gi|440744169|ref|ZP_20923473.1| DNA mismatch repair protein MutS [Pseudomonas syringae BRIP39023]
gi|440374183|gb|ELQ10919.1| DNA mismatch repair protein MutS [Pseudomonas syringae BRIP39023]
Length = 859
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 173/590 (29%), Positives = 290/590 (49%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D ++ L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMSDLEAPHLQQLAQTASTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIR--DGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+L+ IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLSHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 807
>gi|76800771|ref|YP_325779.1| DNA mismatch repair protein MutS [Natronomonas pharaonis DSM 2160]
gi|115299210|sp|Q3IUH3.1|MUTS_NATPD RecName: Full=DNA mismatch repair protein MutS
gi|76556636|emb|CAI48207.1| DNA mismatch repair protein MutS [Natronomonas pharaonis DSM 2160]
Length = 856
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 175/588 (29%), Positives = 288/588 (48%), Gaps = 84/588 (14%)
Query: 1 MNIDATSVRNLEIIEPLH-SALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M +DA +VR+LEI EP H L G + L L T + G R LR L +PL D +
Sbjct: 271 MLLDAVAVRSLEIFEPRHVHGLEGAA-----LVETLDETASALGGRELRDWLRRPLLDAD 325
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I RLD ++ L+ + +DR ++ + ++ DV + ++
Sbjct: 326 RIERRLDAVEALVE----------------RVSDR---------ERASERLADVYDLERL 360
Query: 120 QTLIS-------SIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIG 172
+S + L++ L +P L L DA E+EK AS+R+R+
Sbjct: 361 VAAVSRGRADARDLRALESTLSVVPELRACLDDAAG-----------ESEKLASVRERLD 409
Query: 173 ------EVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYR 226
E+ID ++ + P V T+ I+ G D LD R + D + +L K R
Sbjct: 410 DCTAVRELIDRAIVDS--PPVEITEGGV-IRDGYDERLDELRATERDGKAWIDDLEAKER 466
Query: 227 EELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL-ELASLNV 283
E + +LK+ N+ G+Y+ + + ++ +P + Q +K+ + L E +
Sbjct: 467 ERTGIDSLKVGHNSVHGYYIEVTNPNLDA-VPDDYQRRQTLKNSERFYTPELKEREDEII 525
Query: 284 RNKSAAGEC------YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTIST 337
R + A E +R E+ A + I+E + L +VLC L + +
Sbjct: 526 RAEDRADELEYERFRSVREEVA--AATERIQETARAVAEL-DVLCALATVAAQY------ 576
Query: 338 KPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKST 397
Y RP +G + I+GGRHP++E + F+PN + + ++TGPNMSGKST
Sbjct: 577 ----DYCRPTVDADG-IYIEGGRHPVVERTESSFVPNPTDLPATEPLAVITGPNMSGKST 631
Query: 398 YLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQ 457
Y++QV L +L Q+G +VPA + + + DR+FTR+G D++ STFM EM E + ++
Sbjct: 632 YMRQVALTSVLTQLGSFVPAERAAVPIFDRVFTRVGASDDIAGGRSTFMVEMTELSTILD 691
Query: 458 NVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516
RSL+V+DE+GR TS+ DG+AIA + E+L A+T+FA+H L+++A P
Sbjct: 692 AADGRSLVVLDEVGRGTSTRDGYAIAQATTEYLHDEAGAFTLFATHHHELTDVAAELPQA 751
Query: 517 KILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETA 564
+ HF + ++F L+ G YG+ +AE+AG+P V++ A
Sbjct: 752 RNYHFAAARTADGVEFDHDLRPGAAEA-SYGVEVAEMAGVPEAVVDRA 798
>gi|258569212|ref|XP_002585350.1| hypothetical protein UREG_06039 [Uncinocarpus reesii 1704]
gi|237906796|gb|EEP81197.1| hypothetical protein UREG_06039 [Uncinocarpus reesii 1704]
Length = 722
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/429 (32%), Positives = 242/429 (56%), Gaps = 21/429 (4%)
Query: 205 DIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGK-LPSTFIQ 263
D+AR+S+ + + V+ LA+ E L L L F + +Y +P D++ + LP FI
Sbjct: 278 DVARQSYKEANNDVNELASHLAEAHNLA-LDLRFEAARQYYFRLPVSDLEDRQLPDIFIN 336
Query: 264 VVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCL 323
+ + + TLEL LN + + E ++ ++ L++ IR ++SVL ++E L +
Sbjct: 337 IFQKKAYVEFQTLELVKLNQKITDSHNEVINMSDRSIQELIEVIRPEISVLFRISEGLAM 396
Query: 324 LDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHND-FIPNNIFISEAA 382
LDM+ +FA ++ + Y RP T+ LAI GRHPI E IH+ F+PN+ + + +
Sbjct: 397 LDMLA-TFAQLVAVRD---YIRPEITDT--LAIKSGRHPIREKIHHSKFVPNDAYATRQS 450
Query: 383 NMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNS 442
I+TG NMSGKSTY++ + L+ ++AQIGC+VPA +++ +V+++F R+ D+ E+N
Sbjct: 451 RFQIITGCNMSGKSTYIRSLALMTVMAQIGCFVPAQYASFPIVNQLFARVSADDSAEANV 510
Query: 443 STFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502
STF EM+E AF+++N+ RS++++DELGR TS+ DG +IA + E L+ A FA+H
Sbjct: 511 STFSAEMREMAFILRNIGPRSMVIVDELGRGTSTVDGLSIAIAISEALVDSHALVWFATH 570
Query: 503 MENLSELATIYPNVKILHFYVVIRN--NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTV 560
L+ + V LH V + N + + +++ DG HYGL A P +
Sbjct: 571 FHELARILAHRNGVVNLHLAVEMSNPTSTMTMLYKIADGYAQDKHYGLAFARFLSFPPEL 630
Query: 561 IETARSITSRIT------KKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRH 614
+ETA++++ ++ ++ +K++ I K+ Q+L ++L + + +R
Sbjct: 631 LETAQTVSQKLNLKSADQRRSLKQIAIA----KRRQLLLALREQLFQARDGMMKGDELRT 686
Query: 615 ALQNLKESF 623
L+ L++ F
Sbjct: 687 WLKKLQDEF 695
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++ +LE+I+ L + + K LF +L T T G RLLR+N+LQP +
Sbjct: 200 MMVDLATIISLELIQNLQN-----TKSKDCLFGVLNETLTPMGARLLRSNILQPSTEKSK 254
Query: 61 INTRLDCLDELMSNEQLFFGLSQ 83
+ R D ++EL ++E +F + +
Sbjct: 255 LLGRYDAVEELGTSEDMFHAVRE 277
>gi|359393879|ref|ZP_09186932.1| DNA mismatch repair protein mutS [Halomonas boliviensis LC1]
gi|357971126|gb|EHJ93571.1| DNA mismatch repair protein mutS [Halomonas boliviensis LC1]
Length = 843
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 183/624 (29%), Positives = 298/624 (47%), Gaps = 51/624 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S RNLEI L G+S+ +L +L T T G+RLL+ L +PL+ E +
Sbjct: 257 IDAASRRNLEI----DLNLGGSSDN--TLASVLDTCTTAMGSRLLKRWLNRPLRQREIVQ 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCH---FCFKPKKVTSKVLDVDNAKKS 119
R + L+S + + L + L + +R+L + +P+ +
Sbjct: 311 ARHAGV-ALLSLDAAYMPLRETLSAV-GDVERILARVALYSARPRDLAR----------- 357
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSF-LLANIYRSVCENEKYASIRKRIGEVIDED 178
L+ AL LP L + L + +S L N+ + + A +R
Sbjct: 358 ---------LRDALITLPELEQQLSEVESGSALDNLRPHIRPYPEMADTLRR-------- 400
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
L P V R A G D LD R + + + L + RE L NLK+ +
Sbjct: 401 ALVENPPVVIRDGGVIA--DGFDAELDEHRGMAENAGDYLIQLELRERERTGLANLKVGY 458
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+++ +P Q + P+ +I+ N EL + SA R +
Sbjct: 459 NRVHGYFIELPRSQAQ-QAPADYIRRQTLKNAERFIIPELKEFEDKALSAKSRALTREKW 517
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L+ + E + L ++ L LD++ +FA + RP +E + I+
Sbjct: 518 LYDRLLGDLNESLHALQSTSQALAELDVLC-AFAERAEAL---NWVRPMLSETTGIQIEA 573
Query: 359 GRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E + F+PN++ ++ +M+I+TGPNM GKSTY++Q LI +L G +VPA
Sbjct: 574 GRHPVVEQVSETPFVPNDVMLNPDQHMLIITGPNMGGKSTYMRQTALIALLTHCGSFVPA 633
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I +DRIFTR+G+ D+L STFM EM ETA ++ N +++SLI+MDE+GR TS+
Sbjct: 634 DAAVIGPLDRIFTRIGSSDDLAGGRSTFMVEMTETANILHNATQQSLILMDEIGRGTSTF 693
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
DG ++AW+ E+L +A T+FA+H ++ L V +H + + F +++
Sbjct: 694 DGLSLAWASAEYLAKGRALTLFATHYFEMTALPEHMEGVANIHLTATEHGDSIVFMHRIE 753
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQ 597
GP YGL +A++AG+PS VI+ AR + +++V Q L+ AA
Sbjct: 754 AGPAS-QSYGLQVAQLAGVPSHVIKRAREKLMSLEQRDVDNTAQAPRTTPQQNDLFAAAP 812
Query: 598 RLICLKYSNQDEESI--RHALQNL 619
+ N D + + R AL+ L
Sbjct: 813 HPVAEALENVDMDDLTPREALELL 836
>gi|410730353|ref|XP_003671356.2| hypothetical protein NDAI_0G03360 [Naumovozyma dairenensis CBS 421]
gi|401780174|emb|CCD26113.2| hypothetical protein NDAI_0G03360 [Naumovozyma dairenensis CBS 421]
Length = 855
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 160/497 (32%), Positives = 278/497 (55%), Gaps = 27/497 (5%)
Query: 30 SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFP 89
S + L TT T G R LR N+LQPL D +I RLD + EL ++ + + ++ +
Sbjct: 303 SFWKFLNTTSTKMGARSLRNNILQPLTDKSSILMRLDVIKELQKDKDFLISIRREMKLY- 361
Query: 90 KETDRVLCHFCFKPKKVTSKVLDVDNAK-KSQTLISSIILLKTALDALPLLAKVLKDA-- 146
++ D++ SK+L V++A K + I+ I+LLK ++ L K+L++
Sbjct: 362 QDLDKLF-----------SKLLSVNHAAIKPEQKINYILLLKDSISITLTLKKLLEEVNL 410
Query: 147 QSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDI 206
+S LL + + N I I E I+ED + A + QQ +A+KGG +GLL +
Sbjct: 411 ESQLLQEA-KKIFNNTSILEIENDINEYINEDSVWASSCLELKNQQSYAVKGGANGLLGV 469
Query: 207 ARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQ--GKLPSTFIQV 264
+R+ + + +++ + + ++ LP + F++ +GFYL I + ++P+ FI V
Sbjct: 470 SRQLYRSSVDSITDEIEELSKKYDLP-IDYNFDSFRGFYLKIKKQAFPELNEVPNIFINV 528
Query: 265 VKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLL 324
V N I C+T+++ N + K E + +E + L+D I +++SVL +++E + +L
Sbjct: 529 VSKKNFIECTTMDILKENAKLKEIISEISMLSEQAIHELLDKIAKNISVLFMISEAVSIL 588
Query: 325 DMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANM 384
D++ FAH S K Y P F+ N L + RHPILE+ +F+PN+I ++ +
Sbjct: 589 DLLC-CFAHN-SLK--HNYCIPKFSSN--LILKEARHPILETQTKNFVPNDITNTKNTSS 642
Query: 385 V-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSS 443
V I+TG N SGKS YL+Q+ L+ I+AQ+G VPA + + ++ R+ D +E +SS
Sbjct: 643 VQIITGCNGSGKSVYLRQIALLSIMAQMGSPVPATGACFPIFSKLHARVCN-DPMEMSSS 701
Query: 444 TFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503
TF EMKE A+ + ++ + +L+++DELGR +S DGF+I+ + E+L+ K+ ++H
Sbjct: 702 TFSFEMKEMAYFLDDMDDTTLLILDELGRGSSIGDGFSISLAITEYLIQKKSNVFLSTHF 761
Query: 504 ENLSELATIYPNVKILH 520
+++ + T PNV LH
Sbjct: 762 KDIPAILTSKPNVVHLH 778
>gi|395223337|ref|ZP_10403260.1| DNA mismatch repair protein MutS [Pontibacter sp. BAB1700]
gi|394452722|gb|EJF07928.1| DNA mismatch repair protein MutS [Pontibacter sp. BAB1700]
Length = 876
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 176/589 (29%), Positives = 304/589 (51%), Gaps = 64/589 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +VRNLE++ P + L +L T T G RLL+ ++ PLKD+ I
Sbjct: 269 LDRFTVRNLELVYP-------QNQDGVPLIQILDQTTTPMGARLLKKWVVLPLKDVVQIK 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ L + +L L L++ + +R++ + +V + L
Sbjct: 322 RRLDTVEALTKHSELLDELYLHLKQI-NDLERLISKVAVR--RVNPREL----------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L ALDA+ + K+L + L + + + +R+ I V+ D
Sbjct: 368 ----MQLAKALDAIQPIKKMLAASGIPALVKLADQLAPCD---GLREEIKNVLKPDA--- 417
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + T Q I G++ LD R+ + + L + + +LK+ +N
Sbjct: 418 --PML--TNQGNMINDGVNEELDELRKIAFSGKDYLAQLQQREVRNTGISSLKIAYNKVF 473
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYIRTE 297
G+YL + H + K+P+++I+ N T EL + LN + E + E
Sbjct: 474 GYYLEVTHAH-KDKVPASWIRKQTLVNAERYITEELKTYEEKILNAEERIYTIEFSLFNE 532
Query: 298 ICLEAL--VDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ L+A+ V I+++ V+ ++ CL ++FA Y +P +++ L
Sbjct: 533 LVLQAMDYVGQIQQNAKVIAVID---CL-----SAFA---GIAVAGNYVKPEVSDSHVLD 581
Query: 356 IDGGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
I GRHP++E + +++PN+I++ +E ++I+TGPNM+GKS L+Q LIV++AQI
Sbjct: 582 IKKGRHPVIEKQLPLGEEYVPNDIYLDNEEQQVIIITGPNMAGKSALLRQTALIVLMAQI 641
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
GC+VPA + I ++D+IFTR+G DNL STFM EM ETA ++ N+S+RS+++MDE+G
Sbjct: 642 GCFVPAEAANIGIIDKIFTRVGASDNLSKGESTFMVEMTETASILNNLSDRSMVLMDEIG 701
Query: 472 RATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
R TS+ DG +IAW+ EHL + +A T+FA+H L++LA VK + V
Sbjct: 702 RGTSTYDGISIAWAIVEHLHNHPKFRAKTLFATHYHELNQLAEDLTRVKNFNVSVKETGG 761
Query: 529 RLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
++ F +L + G H +G+ +A++AG+P++V+ A I + K++V
Sbjct: 762 KILFMRKLVEGGSEH--SFGIHVAQMAGMPNSVVLRADEIMHHLEKEKV 808
>gi|410077761|ref|XP_003956462.1| hypothetical protein KAFR_0C03350 [Kazachstania africana CBS 2517]
gi|372463046|emb|CCF57327.1| hypothetical protein KAFR_0C03350 [Kazachstania africana CBS 2517]
Length = 872
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 181/583 (31%), Positives = 308/583 (52%), Gaps = 42/583 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID ++R LE++E K +L+ L T T G RLLR+++LQPL D E+I+
Sbjct: 262 IDPKTIRGLELVEN------KIDKKGITLWSFLDKTSTKMGKRLLRSSILQPLTDNESIS 315
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDN-AKKSQT 121
RL+ + EL + + + LR K + F SK+L +++ A +SQ
Sbjct: 316 RRLEAVSELQKQQDVL----ELLRNAMKSYQDLDLLF--------SKLLSLNHTAIQSQQ 363
Query: 122 LISSIILLKTALDALPLLAKVLK--DAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
I+ ++LLK + L L+ + + LL+ I +C N+ + + I E I+ED
Sbjct: 364 KINYVLLLKETIVITKTLQTRLEHYNMSNLLLSQINDILC-NKSISEVGNLIDEYINEDC 422
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIAR---RSFCDTSEAV-HNLANKYREELKLPNLK 235
+ A+ + Q+ +A+K G +GLLDI+R +S D A+ NL++++ EL
Sbjct: 423 IWAKTNLELQNQRSYAVKCGANGLLDISRQIYKSIIDELLAIIENLSSEFSVELLHS--- 479
Query: 236 LPFNNRQGFYLSIPHKDIQ--GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
F+ ++GF++ I LP FI V CSTLE+ +N R K E
Sbjct: 480 --FDAKRGFFIKISRSKFSDVSMLPPVFINKVTKRTYFECSTLEIIKMNARLKEVMLEIT 537
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
I +E ++ L+ + +SVL +L+E + LLD++ FA S + Y P FT
Sbjct: 538 ILSEEVVDRLLKKTVKKISVLFMLSEAVSLLDLLC-CFAFNSS---LYNYCIPRFT--NT 591
Query: 354 LAIDGGRHPILESIHNDFIPNNIF-ISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
L I+ RHP+LE+ +F+ N I + +++++ IVTG NMSGKS YL+Q+ L+ I+AQ+G
Sbjct: 592 LFIEESRHPVLETSIKNFVSNRISSMKQSSSLQIVTGCNMSGKSLYLKQIALLCIMAQMG 651
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+PA + + +I R+ D +E SS F EMKE A+ + + +++L+V+DELGR
Sbjct: 652 SPIPAKSALFPIFTKIHARVCN-DTMELTSSNFAFEMKEMAYFLCDTDDKTLMVLDELGR 710
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+S DGFAI+ + E+LL K+ ++H +++ +L + V LH + + +L
Sbjct: 711 GSSIGDGFAISMAFAEYLLKTKSTVFLSTHFQDIPKLLSTRAAVVHLHMQTDVTSGQLTM 770
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+++ P ++ + GL + + P V+E A +I++ + K +
Sbjct: 771 HYKVCQSPFYIENSGLRVVKNLFKP-IVLEEAHTISAALLKNK 812
>gi|225378113|ref|ZP_03755334.1| hypothetical protein ROSEINA2194_03773 [Roseburia inulinivorans DSM
16841]
gi|225210114|gb|EEG92468.1| hypothetical protein ROSEINA2194_03773 [Roseburia inulinivorans DSM
16841]
Length = 822
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 180/593 (30%), Positives = 293/593 (49%), Gaps = 67/593 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+++ RNLE++E + K+ SL +L TKT G RLLR+ + QPL D
Sbjct: 261 MIIDSSTRRNLELVETMRE-----KQKRGSLLWVLDKTKTAMGARLLRSYVEQPLIDKAE 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D + ++ N + +E R + + +++ ++V + +
Sbjct: 316 IEKRQDAIADI--NRHMI----------TREELREYLNPIYDLERLITRVTYMSANPRD- 362
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I K ++ LP + +L+D + LL I + E+ + ++ID ++
Sbjct: 363 -----LIAFKNSIGMLPPIKTLLEDFDTELLKEIQTDMDSLEE-------LYQLIDASIM 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P R + IK G + +D R + + + L K RE+ + NLK+ FN
Sbjct: 411 E-EPPISVR--EGGLIKDGYNENVDKYRHAKTEGKTWLAELEAKEREKTGIKNLKIKFNK 467
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE------- 291
G+YL + ++D+ +P F + N T EL L A +
Sbjct: 468 VFGYYLEVTNSYRDL---VPDYFTRKQTLANAERYITPELKELEDMILGAEDKLINLEYD 524
Query: 292 --CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
C +R I E V + A+ + LD +F + Y RP
Sbjct: 525 LFCEVRNRIAAE---------VVRIQKTAKAVAKLD----TFVSLAVVADQNNYCRPKIN 571
Query: 350 ENGPLAIDGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIV 406
ENG + I GRHP++E + N+ FI N+ ++ N + I+TGPNM+GKSTY++Q +IV
Sbjct: 572 ENGVIDIKDGRHPVVEKMMNNDMFIANDTYLDNGNNRISIITGPNMAGKSTYMRQTAIIV 631
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQIG +VPA + I +VDRIFTR+G D+L S STFM EM E A +++N + SL+V
Sbjct: 632 LMAQIGSFVPASSAKIGIVDRIFTRVGASDDLASGQSTFMVEMNEVANILRNATSNSLLV 691
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYV 523
+DE+GR TS+ DG +IAW+ EH+ + L A T+FA+H L+EL NV V
Sbjct: 692 LDEIGRGTSTFDGLSIAWAVVEHISNPKLLGAKTLFATHYHELTELEGKLHNVNNYCIAV 751
Query: 524 VIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ + + F ++ G YG+ +A++AG+P +VIE A+ I ++ ++
Sbjct: 752 KEKGDDIVFLRKIVRGGAD-KSYGIQVAKLAGVPDSVIERAKQIVEELSANDI 803
>gi|440720446|ref|ZP_20900864.1| DNA mismatch repair protein MutS [Pseudomonas syringae BRIP34876]
gi|440726574|ref|ZP_20906827.1| DNA mismatch repair protein MutS [Pseudomonas syringae BRIP34881]
gi|440365971|gb|ELQ03058.1| DNA mismatch repair protein MutS [Pseudomonas syringae BRIP34876]
gi|440366156|gb|ELQ03241.1| DNA mismatch repair protein MutS [Pseudomonas syringae BRIP34881]
Length = 859
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 174/590 (29%), Positives = 289/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLDAPHLQQLAQTASTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIR--DGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAKLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 807
>gi|374261322|ref|ZP_09619906.1| DNA mismatch repair protein [Legionella drancourtii LLAP12]
gi|363538217|gb|EHL31627.1| DNA mismatch repair protein [Legionella drancourtii LLAP12]
Length = 845
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 175/576 (30%), Positives = 286/576 (49%), Gaps = 59/576 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA++ ++LE+ E + G N SL +L T G+RLL+ L +PLK
Sbjct: 261 LQLDASTQKHLELFENVQG---GHEN---SLLSVLDKTACTMGSRLLKRWLGRPLKQQSL 314
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKK--------VTSKVLD 112
I R + E++ Q + Q LR+ + +R++ K + T VL
Sbjct: 315 IQARQQAIAEII-GLQCEATIHQLLRQI-CDVERIVSRIALKSARPRDLLALGTTLTVLP 372
Query: 113 VDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIG 172
+A +Q + LK LP L ++L A + EN + R G
Sbjct: 373 EIHAALAQNKCPLALELKAHTQPLPTLQQLLAAA-----------IIEN---PPVLIRDG 418
Query: 173 EVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLP 232
VI G D LD R +E + L R+ L
Sbjct: 419 GVI---------------------APGFDEELDELRMLSTRANETLDKLEQDERQRTGLS 457
Query: 233 NLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC 292
+LK FNN QG+Y+ + K K P+ + + N T EL + SA +
Sbjct: 458 SLKFGFNNVQGYYIEL-SKAQSEKAPTHYHRKQTLKNVERYITPELKVFEEKVLSAQVKA 516
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
R + + L++ I++ ++ LT LA L LD++V S + P
Sbjct: 517 LAREKWLYDNLLEEIQQSIAELTQLARALAQLDVVVTLAERAQSLN----WCCPSLVPES 572
Query: 353 PLAIDGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
++I GRHP++E++ FI N++ + N++++TGPNM GKSTY++Q LIV+LA I
Sbjct: 573 QISIQAGRHPVIENLLQEQFIANDLQLQPEQNILLITGPNMGGKSTYMRQTALIVLLAHI 632
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA T+ +DRIFTR+G D+L S STFM EM ETA +++ ++ SL+++DE+G
Sbjct: 633 GSFVPAQAVTLGPIDRIFTRIGASDDLASGRSTFMVEMTETAQILRQATQESLVLIDEIG 692
Query: 472 RATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS+ DG A+A++ C +L ++KAYT+F++H L+ L+ +P ++ +H + R+
Sbjct: 693 RGTSTYDGMALAYASCAYLATTIKAYTLFSTHYFELTNLSQQWPCIRNVHLQASLETGRI 752
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
F ++++ G + YGL +AE+AG+P+ V++ ARS
Sbjct: 753 IFLYRVEPGYANR-SYGLEVAELAGIPADVLQIARS 787
>gi|359409331|ref|ZP_09201799.1| DNA mismatch repair protein MutS [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356676084|gb|EHI48437.1| DNA mismatch repair protein MutS [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 887
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 177/582 (30%), Positives = 287/582 (49%), Gaps = 46/582 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+IDA + ++LE+ + L + + SL + T+T G RLL + PL D +
Sbjct: 275 MDIDAATRKSLELTQTL------SGERSGSLLQAIDCTRTAAGARLLHGRISAPLTDRQQ 328
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL + L+ L +S R+ P + DR L D+ N
Sbjct: 329 IEQRLGLANWLLDQPGLCQTISDHFRQVP-DLDRSLSRIA----SGRGGPRDLKN----- 378
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L + L A + + L Q L + R E AS+ RI + E++
Sbjct: 379 -------LAEGLLGARRIASACLSSEQIELSPEVARLCTLAEAPASLGDRILPALGEEL- 430
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +AR + I+ G D LD ++ ++ + L KY E+ + +LK+ +NN
Sbjct: 431 ----PLLAR--EGGFIRSGYDSQLDNLQQMRDESRRLIAALQAKYAEQTGVSSLKIKYNN 484
Query: 241 RQGFYLSIPHKDIQGKLPS-TFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ + + L FI + +T EL+ L + S A + + E+
Sbjct: 485 VLGYHIDVRANHGEKLLGDENFIHRQTTAQAVRFTTTELSELE-KQLSTAADRAVALELE 543
Query: 300 LEA-LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR--YTRPHFTENGPLAI 356
L A L DA+ + A L LD+ AH+ + + +R YTRP ++ I
Sbjct: 544 LFAELTDAVHRQSGQIAEAAHALACLDV-----AHS-TARLAERHHYTRPFLRDDTTFQI 597
Query: 357 DGGRHPILESI---HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
+ GRHP++E + + FI N+ +SE AN+ ++TGPNM+GKSTYL+Q I ILAQ G
Sbjct: 598 EAGRHPVVEQMLTTSSPFIANDCQLSEQANLWLLTGPNMAGKSTYLRQNAHIAILAQAGL 657
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
YVPA + I ++D++F+R+G D+L STFM EM ETA ++ +++SL+++DE+GR
Sbjct: 658 YVPAERAEIGIIDKLFSRVGASDDLARGQSTFMVEMVETAAILNQSTDKSLVILDEIGRG 717
Query: 474 TSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
T++ DG AIAW+C EHL + K T+FA+H L+ L ++I V + F
Sbjct: 718 TATWDGLAIAWACLEHLHNKNKCRTLFATHYHELTSLQVQLDRLRIYAMQVKEWKGEIIF 777
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
Q+ G YG+ +A++AGLP+ VI+ A + ++ +
Sbjct: 778 LHQVAAGAAD-KSYGVHVAKLAGLPTAVIQRAAGLVRQLEAQ 818
>gi|220934456|ref|YP_002513355.1| DNA mismatch repair protein MutS [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995766|gb|ACL72368.1| DNA mismatch repair protein [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 862
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 176/574 (30%), Positives = 291/574 (50%), Gaps = 43/574 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L ++ +L +L T T G+RLL + QPL+ + +
Sbjct: 269 LDAATRRNLELTQNL------AGGREHTLAAVLDETATAMGSRLLSRWIHQPLRHRQDLE 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL + EL+ L + LR+ + +R+L + + + L
Sbjct: 323 ARLGAVAELLEGRG-HRALHERLRRI-GDLERILSRVAL-------------GSARPRDL 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L+ +L LP + +L + L + S E+ + R VI++
Sbjct: 368 VT----LRDSLAVLPEIRGLLAGTGAPRLEQLAGSAGEHPAVVDLLTRA--VIEQP---- 417
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G D LD R + + + +L + RE + LK+ +N
Sbjct: 418 --PVLIRDGGVIAP--GYDPELDELRALSGNADQFLVDLEARERERTGIHTLKVAYNRVH 473
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I K P + + T EL + + SA R + EA
Sbjct: 474 GYYIEISRAQAD-KAPDDYTRRQTLKGAERFITPELKAFEDKVLSARERALAREKALYEA 532
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++A+ E + L AE L LD++ FA T Y+RP T+ + I+ GRHP
Sbjct: 533 LLEALLEPLPALQRSAEALAELDVLA-CFAERAETLG---YSRPELTDTPGMLIEDGRHP 588
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + ++ F+ N + +++A M+++TGPNM GKSTY++Q LIV++A +G +VPA +
Sbjct: 589 VVEQVLDEPFVANGVQLADARRMLVITGPNMGGKSTYMRQTALIVLMAHLGSFVPARRTV 648
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ VDRIFTR+G D+L S STFM EM E A ++ N +E SL++MDE+GR TS+ DG +
Sbjct: 649 LGPVDRIFTRIGASDDLASGRSTFMVEMTEAANILNNATEHSLVLMDEIGRGTSTFDGLS 708
Query: 482 IAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+C EHL +A+T+FA+H L+ LA + + +H V NR+ F +K+GP
Sbjct: 709 LAWACAEHLARHNRAFTLFATHYFELTALAEQHEAIANVHIDAVEHGNRIVFLHAVKEGP 768
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
+ YGL +A +AG+P+ VI+ AR + + ++
Sbjct: 769 AN-QSYGLHVAALAGVPAAVIKKARQRLAELERQ 801
>gi|322371540|ref|ZP_08046086.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus
DX253]
gi|320548831|gb|EFW90499.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus
DX253]
Length = 895
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 176/582 (30%), Positives = 299/582 (51%), Gaps = 48/582 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E +H ++K SLF + TKT G RLL+ L +P + +
Sbjct: 265 VELDATTQRNLELTETMHG------DRKGSLFETVDHTKTSAGRRLLKEWLQRPRRSPDA 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R + F S R+ +ET + +++ SK V + +
Sbjct: 319 LRERQSSV--------AAFAESALAREEIRET----LADAYDLERLASKA--VSGSADAH 364
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE--NEKYASIRKRIGEVIDED 178
L+ ++ +L LP +A + +A S + + V E+ +R+ + E + ED
Sbjct: 365 DLLR----VRDSLAVLPTVADAVANAPSLSGSPLAELVSRPNREEVERLREELAEAVAED 420
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P TQ ++ G D LD S + E LA++ + + +L++
Sbjct: 421 ------PPNTVTQGGL-LRRGYDEELDDIIDSHEENLEWFDTLADREKSRTGISHLQVDR 473
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECYIR 295
N G+YL + D K+P + V N+ T EL +R + GE +
Sbjct: 474 NKTDGYYLQVGKSDTD-KVPEEYEAVKTLKNSERYVTDELREREREILRLEERRGE--LE 530
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E+ E L + + E +L + L LD++ + H + + RP E+G L
Sbjct: 531 YELFGE-LRERVAEHAELLQDVGRTLAELDVLASLAVHAVENG----WVRPELVESG-LD 584
Query: 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
I+ GRHP++E +F+PN++ + + +IVTGPNMSGKSTY++QV LI +LAQ+G +V
Sbjct: 585 IEQGRHPVVERT-TEFVPNDVRMDDDREFLIVTGPNMSGKSTYMRQVALITLLAQVGSFV 643
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD IFTR+G +D L STFM EM+E + ++ + SE SL+++DE+GR T+
Sbjct: 644 PARSARIGVVDGIFTRVGALDELAQGRSTFMVEMQELSNILHSASEDSLVILDEVGRGTA 703
Query: 476 SSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IAW+ E+L + ++A T+FA+H L+ LA V+ +H R+ + F
Sbjct: 704 TYDGISIAWAATEYLHNEVRAKTLFATHYHELTTLADHLERVENVHVAADERDGDVTFLR 763
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
++DGP + YG+ +A++AG+P V+E +R + ++ +++
Sbjct: 764 TVRDGPTN-RSYGIHVADLAGVPMPVVERSRDVLDKLRQEKA 804
>gi|307152088|ref|YP_003887472.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 7822]
gi|306982316|gb|ADN14197.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 7822]
Length = 892
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 183/589 (31%), Positives = 286/589 (48%), Gaps = 59/589 (10%)
Query: 3 IDATSVRNLEIIEPLH-SALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+D + RNLEI + ++ +G SL L T T G R LR L +PL I+ I
Sbjct: 309 LDYQTRRNLEITSTVRDNSYYG------SLLWALDRTATAMGGRALRRWLSEPLLSIKGI 362
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKSQ 120
RLD ++EL N L L Q LR + +++T +V NA++
Sbjct: 363 TARLDTIEELKENPSLRTDLRQLLRDI------------YDLERITGRVGAGTANARELL 410
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L S++ L LA + K S L + + + E ++ + +++ L
Sbjct: 411 ALAQSLVRLTD-------LADLAKGGNSPYLRALQKIPPDLEALG--KEVVAHLVETPPL 461
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
H + V I+ G++ LD RR + + + + NL R+ + NLK+ +N
Sbjct: 462 HLKDGGV--------IQDGVNFQLDEMRRLYEEDQQWLANLEVSERQRTGISNLKIGYNK 513
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+S+P P +I+ N T EL R + A E +
Sbjct: 514 TFGYYISLPRAKAD-HAPENYIRKQTLTNEERYITPELKERETRIERAKDELHELEYQIF 572
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
L + E + +A+ + +D++ A Y+RP TE + I GR
Sbjct: 573 SQLRAKVAEKAQEIRNIAKAVAAIDVL----AGLAEVAVYQSYSRPQITEGRIIEITDGR 628
Query: 361 HPILESI--HNDFIPNNI--------FISEAAN-----MVIVTGPNMSGKSTYLQQVCLI 405
HP++E F+PN+ ISE N ++I+TGPN SGKS YL+QV LI
Sbjct: 629 HPVVEQSLGMGFFVPNSTNLGSLPPSKISEGNNQDYPDLIILTGPNASGKSCYLRQVGLI 688
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
++AQIG +VPA + + + DRIFTR+G VD+L + STFM EM ETA ++ + + SL+
Sbjct: 689 QLMAQIGSFVPAKAALLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATPNSLV 748
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
++DE+GR T++ DG +IAW+ E+L + ++A TIFA+H L+ELA+I NV V
Sbjct: 749 LLDEIGRGTATFDGLSIAWAVAEYLAAEIQARTIFATHYHELNELASILSNVANYQVTVK 808
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
N + F Q++ G YG+ +AGLPS VI+ AR + ++I K
Sbjct: 809 EMPNEIIFLHQVRPGGAD-KSYGIEAGRLAGLPSVVIDRARQVMTQIEK 856
>gi|374581420|ref|ZP_09654514.1| DNA mismatch repair protein MutS [Desulfosporosinus youngiae DSM
17734]
gi|374417502|gb|EHQ89937.1| DNA mismatch repair protein MutS [Desulfosporosinus youngiae DSM
17734]
Length = 850
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 177/593 (29%), Positives = 297/593 (50%), Gaps = 70/593 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLE+ E L A KK +L +L T+T G RLL+ + +PL +
Sbjct: 250 MFLDQWTRRNLELTESLRGA-----GKKGTLLSVLDLTQTAFGGRLLKHWIDKPLLRQDE 304
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ ++EL+S+ FLRK +K+ S+V D++
Sbjct: 305 IEGRLNSVEELVSD--------SFLRK--------------DLQKLLSEVYDLERLMGKV 342
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ ++ A D L L Q+ L R++ ++ S++ R+ + L
Sbjct: 343 SYGTA-----NAKDLLSL-------TQTLALLPEIRTLFDSSSAESLKVRLPD------L 384
Query: 181 HARVPFVARTQQCF------------AIKGGIDGLLDIARRSFCDTSEAVHNLANKYREE 228
PFV + Q IK G +D R E + L N RE
Sbjct: 385 DGFEPFVTKLQSALNSNPPLSLKEGNIIKTGYSQEVDELRLISAGGKEWLAQLENSERER 444
Query: 229 LKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSA 288
+ +LK+ +N G+Y+ I H + +PS + + N T EL ++ A
Sbjct: 445 TGIRSLKIGYNKVFGYYIEITHANAH-LIPSDYQRKQTLSNAERFITPELKEYELKIIGA 503
Query: 289 AGECY-IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
+ + E+ L AL + +R + + A+VL +D+ V+ + + Y RP
Sbjct: 504 EEKLKDLEYELIL-ALREEVRRNTKRIIRAAQVLAEIDVFVSLAEAAVR----NHYVRPQ 558
Query: 348 FTENGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405
++G + I GRHP++E + F+PN+ +S + ++ ++TGPNM+GKSTY++QV LI
Sbjct: 559 LKKDGQIIIIEGRHPVVEEMLEQGAFVPNDTHMSGSQHLALITGPNMAGKSTYMRQVALI 618
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
V++A +G +VPA+ ++I +VDRIFTR+G D+L + STFM EM+E A ++ S+ SLI
Sbjct: 619 VLMAHMGSFVPANKASIALVDRIFTRVGASDDLAAGQSTFMVEMQEVAHILNYASKNSLI 678
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLSLKAY---TIFASHMENLSELATIYPNVKILHFY 522
++DE+GR T++ DG +IAW+ EHL+ + T+FA+H L++L +P + LH
Sbjct: 679 ILDEIGRGTATYDGLSIAWAVAEHLVQDPQFNPKTLFATHYHELTQLQDEFPGLFNLHVG 738
Query: 523 VVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
V R + F ++ G R YG+ +A +AGLP +I+ A+++ ++ E
Sbjct: 739 VKERGEDIVFLHKILPG-RADRSYGIQVARLAGLPHDLIQRAKTLLLKLESSE 790
>gi|335032075|ref|ZP_08525484.1| DNA mismatch repair protein MutS [Streptococcus anginosus SK52 =
DSM 20563]
gi|333767941|gb|EGL45156.1| DNA mismatch repair protein MutS [Streptococcus anginosus SK52 =
DSM 20563]
Length = 855
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 179/582 (30%), Positives = 292/582 (50%), Gaps = 58/582 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D +++ +L++ E T K SL+ ++ TKT GTRLLRA + +PL D E
Sbjct: 252 LQMDYSTMASLDLTENAR-----TGKKHGSLYWLMDDTKTAMGTRLLRAWIQRPLIDKER 306
Query: 61 INTRLDCLDELMSNEQLFF---GLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
I R D + + + FF LS L+ + +R+ F
Sbjct: 307 IVKRQDVVQVFLDH---FFERSDLSDTLKGV-YDIERLASRVSF---------------- 346
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+T ++ L L +P + +LK S +L ++ + E + AS+ I I
Sbjct: 347 -GKTNPKDLLQLAATLSHVPQIKGILKGIDSPVLEDLIAKLDEIPELASL---IQSAISP 402
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D + + IK G D LD R D + + ++ K RE + NLK+
Sbjct: 403 DASNV-------ITEGNIIKTGFDETLDKYRVVMRDGTSWIADIEAKEREASGINNLKID 455
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGEC 292
+N + G+Y + + ++ +PS F + N+ T ELA L R KSA E
Sbjct: 456 YNKKDGYYFHVTNSQLE-HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEY 514
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
I I EA + + L LA+ L +D ++ SFA + + RP F E
Sbjct: 515 EIFMRIREEA-----GKYIKRLQSLAQTLATVD-VLQSFAAVAEKQ---HFVRPEFIEQR 565
Query: 353 PLAIDGGRHPILESIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ ID GRH ++E + +IPN+I + E N+ ++TGPNMSGKSTY++Q+ +IVI+AQ
Sbjct: 566 SIQIDKGRHAVVEKVMGAQTYIPNSISMDENVNVQLITGPNMSGKSTYMRQLAIIVIMAQ 625
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G YV A + + + D IFTR+G D+L S STFM EM E + +E SLI+ DEL
Sbjct: 626 MGSYVSAESAQLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANHAISQATENSLILFDEL 685
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR T++ DG A+A + E++ + A T+FA+H L+EL+T ++ +H + ++ +
Sbjct: 686 GRGTATYDGMALAQAIIEYIHNRTGAKTLFATHYHELTELSTSLTQLENVHVATLEKDGQ 745
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+ F +++ GP YG+ +A++AGLP+ ++ A I +R+
Sbjct: 746 VTFLHKIEVGPAD-KSYGIHVAKIAGLPNDLLTRANQILTRL 786
>gi|366991985|ref|XP_003675758.1| hypothetical protein NCAS_0C04040 [Naumovozyma castellii CBS 4309]
gi|342301623|emb|CCC69394.1| hypothetical protein NCAS_0C04040 [Naumovozyma castellii CBS 4309]
Length = 881
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 191/644 (29%), Positives = 334/644 (51%), Gaps = 52/644 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ LE++E + + S + L TT T G R LR N+LQPL D ++
Sbjct: 267 MLIDPKTINGLELVENI------IDKRGMSFWKFLNTTCTKMGERSLRNNILQPLTDEKS 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I R + + EL +E+L L + ++ + ++ DR+ K+L V+ NA K+
Sbjct: 321 IIMRQEAVKELQGDEKLLEQLRKHMKVY-QDLDRIFV-----------KLLSVNHNAIKA 368
Query: 120 QTLISSIILLKTALDALPLLAKVLK--DAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+ I+ +ILLK +L L +L+ + +S LL + + + NE I + I + I+E
Sbjct: 369 EQKINYVILLKDSLITTQRLKAILEPIEFESRLLQEV-KKIFFNESITEIEQCINKYINE 427
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D + A + QQ +A+ + LL+I+R+ + + + +E LP L
Sbjct: 428 DCIWASSNLELKNQQTYAVNDSANSLLEISRQLYKNLMNDIMEEIEGLSKEFDLP-LDYS 486
Query: 238 FNNRQGFYLSIPHKDIQ--GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
F++ +GF+L I +I LP+ FI + N I C TL + +NVR K E
Sbjct: 487 FDSNRGFFLKIKKGEINDLNSLPNEFINKISKKNFIECCTLNIMKMNVRLKEIILEISSI 546
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+E + L++ + + +S+L +++E + +LD++ SFA S K + Y P F+ N L
Sbjct: 547 SEQVVLELLNEVVKYLSILFMISEAVSILDLLC-SFAFK-SFK--ENYCFPKFSTN--LF 600
Query: 356 IDGGRHPILESIHNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
+ RHPILE++ F+PN+I ++ ++ V I+TG N SGKS YL+Q+ L+ I++QIG
Sbjct: 601 LRQSRHPILETLIKGFVPNDIVSTKTSSAVQIITGCNRSGKSVYLKQLPLLCIMSQIGSP 660
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + + ++ R+ D +E NSSTF EMKE A+ + + + +L+++DELGR +
Sbjct: 661 VPAESAIVPIYKKVHARVCN-DTMEMNSSTFSFEMKEMAYFLDDTDQDTLLIIDELGRGS 719
Query: 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN---NRLD 531
S DGF+I+ + EHL+ K + ++H E + + PNV LH ++ RN N +
Sbjct: 720 SIGDGFSISLAITEHLIGTKGTVLLSTHFEAIPSILVTRPNV--LHLHMQSRNLPDNSIR 777
Query: 532 FKFQLKDGPRHV---------PHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN 582
+ + ++ P++ + E A + S +++ ++R T +++R E N
Sbjct: 778 MSYTVGGHASNIVNNAIKMVSPYFDPHIIEKAYIISVLLKKIEDGSTRGTLTDIERKE-N 836
Query: 583 CLQYKQIQMLYHAAQRLICLKYSNQDEESIRHA-LQNLKESFID 625
KQ++ ++ + LK E I A L+ ++ FID
Sbjct: 837 LETSKQMKKIHIIVE---VLKEVMTGNEPISLASLKAIQTDFID 877
>gi|434403688|ref|YP_007146573.1| DNA mismatch repair protein MutS [Cylindrospermum stagnale PCC
7417]
gi|428257943|gb|AFZ23893.1| DNA mismatch repair protein MutS [Cylindrospermum stagnale PCC
7417]
Length = 865
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 187/607 (30%), Positives = 293/607 (48%), Gaps = 69/607 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + SL L T T G R LR LLQPL DI+ I
Sbjct: 304 VDQQTRRNLEITQTVRDGTF-----HGSLLWALDRTSTAMGGRALRRWLLQPLLDIKGIR 358
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+R D + EL+ N L L Q LR+ + +++T + A
Sbjct: 359 SRQDTIQELVENTPLRQDLRQLLRQI------------YDLERLTGR------AGSGTAN 400
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L +L LP L++++ DA S L + + E+ A +K +++ +H
Sbjct: 401 ARDLVALADSLSRLPQLSRLVADAHSPFLKALQKVPPVLEELA--QKLHLHIVESPPIHL 458
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ + I+ GI+ LD + + + + NL R +PNLK+ FN
Sbjct: 459 K--------EGGLIRPGINPQLDERKATVEGDQQWIANLEVDERTRTGIPNLKVGFNKTF 510
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC-YIRTEI--C 299
G+Y+SI + +P +I+ N T +L R SA + + EI
Sbjct: 511 GYYISI-TRSKSDTVPPNYIRKQTLTNEERFITPDLKEREARILSARDDLNELEYEIFAS 569
Query: 300 LEALVDAIRE---DVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
L A V E ++S A+VLC L + AH Y RP + I
Sbjct: 570 LRAEVGQFAEIIRNLSRAVAAADVLCGLAELA---AH-------QGYCRPDMVAGREVVI 619
Query: 357 DGGRHPILES--IHNDFIPNNIFISEAAN---------------MVIVTGPNMSGKSTYL 399
GRHP++E F+PN+ + N +VI+TGPN SGKS YL
Sbjct: 620 FDGRHPVVEQSLPAGFFVPNSTGLGGETNRQDAEGAKEEEEKPDLVILTGPNASGKSCYL 679
Query: 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459
+QV LI ++AQ+G +VPA + + + DRIFTR+G VD+L + STFM EM ETA ++ +
Sbjct: 680 RQVGLIQLMAQVGSFVPARLANLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHA 739
Query: 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKI 518
+ RSL+++DE+GR T++ DG +IAW+ E+L + +++ TIFA+H L+ELATI PNV
Sbjct: 740 TSRSLVLLDEIGRGTATFDGLSIAWAVAEYLAVDIRSRTIFATHYHELNELATILPNVAN 799
Query: 519 LHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
V +++ F Q++ G YG+ +AGLP+ VI+ A+ + +I +
Sbjct: 800 YQVTVKELPDQIIFLHQVQPGGAD-KSYGIEAGRLAGLPAVVIKRAKQVMGQIEQHSKIA 858
Query: 579 MEINCLQ 585
M + L+
Sbjct: 859 MGLQNLE 865
>gi|384914572|ref|ZP_10015356.1| DNA mismatch repair protein mutS [Methylacidiphilum fumariolicum
SolV]
gi|384527457|emb|CCG91224.1| DNA mismatch repair protein mutS [Methylacidiphilum fumariolicum
SolV]
Length = 837
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 179/579 (30%), Positives = 291/579 (50%), Gaps = 62/579 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D+ + + LE+I+ S +SLFH + T T GG RLLR L +P + + I
Sbjct: 276 LDSIAQKTLEVIQ-------ANSKSGKSLFHAIDKTLTPGGGRLLRRWLSEPSRCLPVIQ 328
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + ++ +Q L + L+K + +R+L +K SQ
Sbjct: 329 ERQQAIALWINQQQKREQLREILKKI-GDLERLL-------------------SKVSQGY 368
Query: 123 IS--SIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ ++ LK +L LPL+ ++L Q L + + + SI K + +D+ L
Sbjct: 369 VNPRELLSLKESLQRLPLITELLSSIQDEKLRAMAQDI-------SIEKDMVAELDK-AL 420
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
PF + + IK G LD R + + + + RE+ + LK+ +N
Sbjct: 421 EENPPFSIK--EGGIIKKGYCEQLDELRELSEQGQKLLIDFEQQEREKTGIKTLKIKYNQ 478
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVR---NKSAAGECYIRTE 297
G+ + I H + +PS + + N T EL + + +K+ A E
Sbjct: 479 VFGYLIEISHAQAKS-VPSYYERRQTLANVERFITRELKEIEQKILGSKNRANELE---- 533
Query: 298 ICLEALVDAIREDVS----VLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ L +RE +S VL +V+ LD+ F+ S RY RP +
Sbjct: 534 ---QELFSKLREKISLRIPVLQKTVDVINKLDV----FSSLASLAQEKRYCRPSMVDEPI 586
Query: 354 LAIDGGRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
+ I+ GRHPI+E DF+PN+ F+ + ++I+TGPNM+GKSTY++QV LI +LA
Sbjct: 587 IEIEEGRHPIVEQCLPSEDFVPNSTFLGPDSRILILTGPNMAGKSTYIRQVALICLLAHT 646
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + I ++DRIFTR+G+ D+L STF+ EM ETA ++ N +ERSL+++DE+G
Sbjct: 647 GSFVPAKRAKIGLLDRIFTRIGSSDDLSMGQSTFLVEMNETANILHNATERSLVILDEVG 706
Query: 472 RATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS+ DG ++AW+ E L K+ T+FA+H L++LA YP +K VV +
Sbjct: 707 RGTSTFDGLSLAWAIVEDLYKTNKSLTLFATHYHELAKLADFYPEIKNYSMAVVETTENV 766
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
F ++ G + YG+ +A++AG+P VIE A+ I S
Sbjct: 767 VFLRKVVQGSMN-KSYGIQVAKLAGIPERVIEKAKKILS 804
>gi|406967699|gb|EKD92716.1| hypothetical protein ACD_28C00354G0004, partial [uncultured
bacterium]
Length = 776
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 183/591 (30%), Positives = 301/591 (50%), Gaps = 60/591 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++RNLE++ H K+ SL +L T+T G RLL+ ++PL +
Sbjct: 171 MLLDEATLRNLELLSTFHD-----HKKEGSLLGVLDRTQTAMGGRLLKQWTVRPLTEKNR 225
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++ + +F L + + H + V L+ + +
Sbjct: 226 IQVRLDAVENFIKEGSIFETLWE-----------EMGHILDLERSVARLSLERGTPRDA- 273
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LK++L LPL+ +L + LLA + + + S+ ID ++
Sbjct: 274 ------MALKSSLQRLPLVKSLLSALNAPLLAELQKKLQPLPDLVSL-------IDASIV 320
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + F I+ G LD R + + NL + + + +LK+ +N
Sbjct: 321 EE--PPLNLKEGGF-IREGFHEELDELRSLSREGKGFIKNLQQQEIQRTGISSLKVKYNR 377
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYIR 295
G+Y+ I ++ G +P + + N T EL + L +KS A E +
Sbjct: 378 VFGYYIEISKSNL-GNVPENYTRKQTLVNAERYITPELKTYEEKVLTAEDKSKALEAELF 436
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L + I E + ++ AE + LD+++ SF +++ K +RY +P ++ L
Sbjct: 437 RE-----LRETIMESIGLIQQNAEAIAELDVLL-SFT-SVALK--NRYVKPQLRDDFTLT 487
Query: 356 IDGGRHPILESIH--NDFIPNNI-FISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
I GGRHP++E+++ DFIPN+ F +E ++++TGPNMSGKST+L+QV LI ++AQIG
Sbjct: 488 IQGGRHPVVETMNPSGDFIPNDTHFNAENQQILLITGPNMSGKSTFLRQVALISLMAQIG 547
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
YVPA + I VVDRIFTR+G DNL STFM EM+E A ++ N + RSLI++DE+GR
Sbjct: 548 SYVPAQSAEIAVVDRIFTRVGASDNLSKGQSTFMVEMQEAANILNNATARSLIILDEIGR 607
Query: 473 ATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVI----RN 527
TS+ DG +IAW+ E+L + A T+FA+H EL + ++ Y V+
Sbjct: 608 GTSTYDGLSIAWAILEYLHQQIGAKTLFATHYH---ELIAVTERLERAQNYCVLVHEDTQ 664
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
N + F +++ G YG+ +A++AGLP VIE A+ I + + V++
Sbjct: 665 NGVVFLHKIQAGGID-KSYGIEVAKLAGLPRAVIEKAQHILKDLEEGVVEK 714
>gi|390942420|ref|YP_006406181.1| DNA mismatch repair protein MutS [Belliella baltica DSM 15883]
gi|390415848|gb|AFL83426.1| DNA mismatch repair protein MutS [Belliella baltica DSM 15883]
Length = 870
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 175/580 (30%), Positives = 296/580 (51%), Gaps = 52/580 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++RNLE++ P + L +L T T G+R+++ ++ PLK+ E I
Sbjct: 271 LDKFTIRNLELVYP-------QQDGGIPLISILDHTVTPMGSRMMKKWMVLPLKEKEPIE 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL ++ S +L + L++ + +R++ ++ + ++ TL
Sbjct: 324 ERLKVVEYFFSKRELADDIHNHLKQI-GDLERLISKVAVG--RINPREMNQLKKALKNTL 380
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
IL K++ +L LA + + FLL I + + E+
Sbjct: 381 PIKEILRKSSNASLKKLADQINPCE-FLLEKIEKELQED--------------------- 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + T Q IK G+D LD R + + L ++ + + +LK+ FN
Sbjct: 419 -APML--THQGNIIKDGVDSELDEYRGLANTGKDYLVQLQHREIQRTGISSLKIAFNKVF 475
Query: 243 GFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+YL + HKD K+P +I+ N T EL + +A +
Sbjct: 476 GYYLEVTNAHKD---KVPEEWIRKQTLVNAERYITPELKDYEEKILNAEERMITIEQKYF 532
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
ALV E V+ + A VL +D ++ SFA S + Y +P ++ L I GR
Sbjct: 533 LALVQDASEFVTQIQQNARVLATVDSLL-SFA---SVAKSNNYCKPKISDTDSLEIKDGR 588
Query: 361 HPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
HP++E I D++PN+I++ +++ ++I+TGPNM+GKS L+Q LIV++AQ+G +VP
Sbjct: 589 HPVIEKQLPIGEDYVPNDIYLDNDSQQIIIITGPNMAGKSALLRQTALIVLMAQMGSFVP 648
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++ I ++D++FTR+G DNL STFM EM ETA ++ N+S+RSL++MDE+GR TS+
Sbjct: 649 ASYARIGIIDKVFTRVGASDNLAKGESTFMVEMTETASILNNLSDRSLVLMDEIGRGTST 708
Query: 477 SDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
DG +IAWS E L + +A T+FA+H L++LA +P +K + V N++ F
Sbjct: 709 YDGISIAWSIVEFLHNHPKSRAKTLFATHYHELNQLAEDFPKIKNFNVSVKEVGNKVIFM 768
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+LK+G +G+ +A++AG+P+ V+ A I + K
Sbjct: 769 RKLKEGGSE-HSFGIHVAQMAGMPNPVVLRASEIMVHLEK 807
>gi|398848588|ref|ZP_10605397.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM84]
gi|398247843|gb|EJN33277.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM84]
Length = 857
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 174/570 (30%), Positives = 281/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L +L +T +RLL L +PL+D + +
Sbjct: 266 LDGASRRNLELDINL------AGGRDNTLQSVLDRCQTAMASRLLTRWLNRPLRDPKVLQ 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + F L L+ + +R+L + NA+
Sbjct: 320 ARQDSIRCLLDGYR-FEKLQPQLKDI-GDIERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + AS+ +R +ID
Sbjct: 363 --DLARLRDALCALPELQNAMAELEAPHLARLAAITGTYPELASLLERA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKAGYDNDLDELLAISENAGQFLIDLETREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P +I+ T EL + + SA R ++ +A
Sbjct: 471 GYFIELPTKQAE-QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDA 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ P F + L ID GRHP
Sbjct: 530 LLETLISHLAPLQDSAAALAELDVLSNLAERALNLD----LNCPRFVDEPCLRIDQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV++A IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLSLDNSTRMLIITGPNMGGKSTYMRQTALIVLMAHIGSFVPAASCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+PS VI+ AR R+
Sbjct: 766 SQ-SYGLAVAQLAGVPSVVIQRAREHLGRL 794
>gi|189502159|ref|YP_001957876.1| DNA mismatch repair protein MutS [Candidatus Amoebophilus asiaticus
5a2]
gi|189497600|gb|ACE06147.1| hypothetical protein Aasi_0767 [Candidatus Amoebophilus asiaticus
5a2]
Length = 863
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 181/578 (31%), Positives = 300/578 (51%), Gaps = 60/578 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++RNLEI++P G S L +L T T G RL++ L+ PLKDI+ I
Sbjct: 265 LDKFTIRNLEILQPQQEG--GVS-----LIEVLDKTVTPMGARLMKKWLVLPLKDIQAIQ 317
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +D + L+ + Q L++ + +R++ + T +
Sbjct: 318 RRLDIVDLFYQDTNLWGSILQELKQI-SDLERLISKVSV--GRATPR------------- 361
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L+ AL + L+ ++ LL + + + N +Y + + R G + D
Sbjct: 362 --DLLALQKALQHTLPIQNYLQTSEHDLLIKLSQQL-HNCEYLADKIR-GTLQDN----- 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P ++ TQ I+ GID LD R+ + + L K + + +LK+ +N
Sbjct: 413 --PPLSLTQGDL-IREGIDSELDELRKIAYQGKDYLLQLQQKEIKNTGINSLKIAYNKVF 469
Query: 243 GFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+YL + HK K+P+++I+ N T EL + + A + +
Sbjct: 470 GYYLEVTNVHK---SKVPASWIRKQTLVNAERYVTEELKTYEEKILQAESKMLEIEQRLY 526
Query: 301 EALVDAIREDVSVL----TLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ L+D+ E V + +LA++ C L + H +YT+P + + I
Sbjct: 527 QQLLDSALEFVPQILQNAKILAQIDCYLTFAQEARKH--------QYTKPILANHKKIII 578
Query: 357 DGGRHPILE---SIHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
GRHP++E S+ ++PN+I++ +E ++++TGPNM+GKS L+QV LIV++AQIG
Sbjct: 579 KNGRHPVIEQQLSVDVSYVPNDIYLDNETQQVIVITGPNMAGKSALLRQVALIVLMAQIG 638
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I +VD+IFTR+G DNL STFM EM ETA +M N+S+RSLIVMDE+GR
Sbjct: 639 SFVPASQAEIGLVDKIFTRVGASDNLALGESTFMVEMTETASIMHNLSDRSLIVMDEIGR 698
Query: 473 ATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
TS+ DG +IAWS E+L + KA T+FA+H L++L+ VK + V +
Sbjct: 699 GTSTYDGISIAWSIIEYLHNHPKYKAKTLFATHYHELNQLSDQLERVKNFNVAVKEVAGK 758
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ F +L++G +G+ +A++AG+P+ V+E A I
Sbjct: 759 IIFLRKLREGGSE-HSFGIHVAQLAGMPTQVVERASEI 795
>gi|418964295|ref|ZP_13516109.1| DNA mismatch repair protein MutS [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383341100|gb|EID19368.1| DNA mismatch repair protein MutS [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 855
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 181/582 (31%), Positives = 293/582 (50%), Gaps = 58/582 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D +++ +L++ E T K SL+ ++ TKT GTRLLRA + +PL D E
Sbjct: 252 LQMDYSTMASLDLTENAR-----TGKKHGSLYWLMDDTKTAMGTRLLRAWIQRPLIDKER 306
Query: 61 INTRLDCLDELMSNEQLFF---GLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
I R D + + + FF LS L+ + +R+ F
Sbjct: 307 IVKRQDVVQVFLDH---FFERSDLSDTLKGV-YDIERLASRVSF---------------- 346
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+T ++ L L +P + +LK S +L ++ + E + AS+ I I
Sbjct: 347 -GKTNPKDLLQLAATLSHVPQIKGILKGIDSPVLEDLIAKLDEIPELASL---IQSAISP 402
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D P V + IK G D LD R D + + ++ K RE + NLK+
Sbjct: 403 DA-----PNV--ITEGNIIKTGFDETLDKYRVVMRDGTSWIADIEAKEREASGINNLKID 455
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGEC 292
+N + G+Y + + ++ +PS F + N+ T ELA L R KSA E
Sbjct: 456 YNKKDGYYFHVTNSQLE-HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEY 514
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
I I EA + + L LA+ L +D ++ SFA + + RP F E
Sbjct: 515 EIFMRIREEA-----GKYIKRLQSLAQTLATVD-VLQSFAAVAEKQ---HFVRPEFIEQR 565
Query: 353 PLAIDGGRHPILESIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ ID GRH ++E + +IPN+I + E N+ ++TGPNMSGKSTY++Q+ +IVI+AQ
Sbjct: 566 SIQIDKGRHAVVEKVMGAQTYIPNSISMDENVNVQLITGPNMSGKSTYMRQLAIIVIMAQ 625
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G YV A + + + D IFTR+G D+L S STFM EM E + +E SLI+ DEL
Sbjct: 626 MGSYVSAESAQLPIFDAIFTRIGAADDLVSGQSTFMIEMMEANHAISQATENSLILFDEL 685
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR T++ DG A+A + E++ + A T+FA+H L+EL+T ++ +H + ++ +
Sbjct: 686 GRGTATYDGMALAQAIIEYIHNRTGAKTLFATHYHELTELSTSLTQLENVHVETLEKDGQ 745
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+ F +++ GP YG+ +A++AGLP+ ++ A I +R+
Sbjct: 746 VTFLHKIEVGPAD-KSYGIHVAKIAGLPNDLLTRADQILTRL 786
>gi|365540870|ref|ZP_09366045.1| DNA mismatch repair protein MutS [Vibrio ordalii ATCC 33509]
Length = 862
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 178/576 (30%), Positives = 287/576 (49%), Gaps = 53/576 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L T L +L T G+R+L+ L QP++ I+T+N
Sbjct: 274 LDAATRRNLEITQNLSGGFDNT------LAEVLDHCATPMGSRMLKRWLHQPMRCIDTLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL LF L L++ + +R+L + +
Sbjct: 328 QRLDAIGEL-KQLTLFSELQPVLKQI-GDIERILARLALRSARP---------------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A+ LP L+++L+ L + V ++ + R+ I ++
Sbjct: 370 -RDLARLRHAMQQLPQLSEILQPLSQPHLVQLTHHVQPLDELCT---RLERAIKDNP--- 422
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G LD R +E ++ L + RE + LK+ +N
Sbjct: 423 --PVVIRDGGVIA--DGYSAELDEWRDLANGATEYLNKLEAEERERHGIDTLKVGYNAIH 478
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ + L E LN ++K+ A E +
Sbjct: 479 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIAELKAHEDKVLNSKSKALAVEKQL--- 534
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA L LD++ N S Y RP +++ + I
Sbjct: 535 --WEELFDLLLPHLEQMQNLASSLSQLDVLQNLAERAESLD----YCRPTLSKDPAIHIQ 588
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I ++ M+I+TGPNM GKSTY++Q LI +LA IGCYVP
Sbjct: 589 AGRHPVVEQVMSEPFIANPIELNPQRKMLIITGPNMGGKSTYMRQTALITLLAHIGCYVP 648
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 649 AEAARIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATQNSLVLMDEIGRGTST 708
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ + L S + A T+FA+H L+EL P++ +H V + + F
Sbjct: 709 YDGLSLAWASAQWLASQIGALTLFATHYFELTELPNQLPHLANVHLDAVEHGDSIAFMHA 768
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+++G YGL +A +AG+P VI+ AR+ S++
Sbjct: 769 VQEGAAS-KSYGLAVAGLAGVPKAVIKNARAKLSQL 803
>gi|325661608|ref|ZP_08150232.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472135|gb|EGC75349.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
4_1_37FAA]
Length = 876
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 176/587 (29%), Positives = 297/587 (50%), Gaps = 55/587 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D++S RNLE+ E L K+ SL +L TKT G R+LR+ + QPL D
Sbjct: 261 MLLDSSSRRNLELCETLRE-----KQKRGSLLWVLDKTKTAMGARMLRSYIEQPLIDRHE 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ ++EL + +E R + +++ S+V + +
Sbjct: 316 IEQRLEAVEELKD------------KAISREEIREYLSPVYDLERLISRV--TYQSANPR 361
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LIS + +L+ LP + +L + LL + +CE + + ++++E ++
Sbjct: 362 DLIS----FRNSLEMLPHIKYILTEMHEELL----QQICEE---LDTLEDLYQLLNESIM 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A ++ IK G D +D+ R++ + + L + RE+ + NLK+ +N
Sbjct: 411 EE--PPLA-MKEGGIIKDGYDADVDMLRQAKTEGKNWLAQLEEEEREKTGIRNLKVKYNK 467
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + +K++ +P + + N T L L A + Y
Sbjct: 468 VFGYYLEVTNAYKEL---VPDYYTRKQTLANAERFITPRLKELEDTILGAEDKLYALEYT 524
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ D I +V + A+ + +D+ F + Y RP E G + I G
Sbjct: 525 LYCKVRDRIASEVLRVQKTAKAVAKIDV----FTSLALVAERNNYVRPKINEKGLIDIKG 580
Query: 359 GRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + D FI N+ + + N V I+TGPNM+GKSTY++Q LIV++AQIG +V
Sbjct: 581 GRHPVVEKMTPDNMFIANDTLLDDKKNRVSIITGPNMAGKSTYMRQSALIVLMAQIGSFV 640
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I + DRIFTR+G D+L S STFM EM E A +++N + SL+++DE+GR TS
Sbjct: 641 PADSANIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSSSLLILDEIGRGTS 700
Query: 476 SSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAW+ EH+ + L A T+FA+H L+EL +V ++ + ++ D
Sbjct: 701 TFDGLSIAWAVVEHISNKKLLGAKTLFATHYHELTELEGKLDSVN--NYCIAVKEQGDDI 758
Query: 533 KFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F +K G YG+ +A++AG+P +VI A+ I +++ ++
Sbjct: 759 VFLRKIVKGGAD--KSYGIQVAKLAGVPESVIARAKEIVGELSEADI 803
>gi|313204209|ref|YP_004042866.1| DNA mismatch repair protein muts [Paludibacter propionicigenes WB4]
gi|312443525|gb|ADQ79881.1| DNA mismatch repair protein MutS [Paludibacter propionicigenes WB4]
Length = 870
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 181/588 (30%), Positives = 302/588 (51%), Gaps = 72/588 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNK-KRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+D +VRNLE L+G+ N+ R+L ++ T + G R+L+ + PLKD++ I
Sbjct: 267 LDRFTVRNLE--------LYGSINEGARTLLDVIDKTISPMGARMLKRWIAFPLKDVKPI 318
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFC---FKPKKVTSKVLDVDNAKK 118
N RL ++ N L L Q + + +R++ P++V
Sbjct: 319 NERLSVVEHFFKNPDLKLLLEQNV-ALIGDLERIISKVAVGRINPREV------------ 365
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+ LK AL A+ + +K A S + R + + ++ I E ID++
Sbjct: 366 --------VQLKVALKAI----EPIKLACSQSDNDTLRKIADQLNACAV---ISEKIDKE 410
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+ + F+ R +K G+D LD R+ + + + + E +P+LK+ F
Sbjct: 411 IDNDPPNFIHRGG---VLKSGVDAELDELRQLAYSGKDFLQKIQERESAETGIPSLKISF 467
Query: 239 NNRQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGE 291
NN G+Y+ + HKD K+P T+I+ N T EL L K + E
Sbjct: 468 NNVFGYYIEVRNMHKD---KVPETWIRKQTLVNAERYITQELKVYEEKILGAEEKILSIE 524
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
+ ++ L +LVD I L+A++ CLL SF S ++Y RP T+
Sbjct: 525 IRLFNDLVL-SLVDYITAIQLDSNLIAQLDCLL-----SFTRVSSE---NKYVRPQVTDT 575
Query: 352 GPLAIDGGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
L I GRHP++E I +I N++++ +E ++I+TGPNMSGKS L+Q +I +
Sbjct: 576 DVLEIKQGRHPVIEKQLPIGESYIANDVYLDNETQQIIIITGPNMSGKSALLRQTAIITL 635
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQIGC+VPA ++I VVD+IFTR+G DN+ STFM EM E A ++ N+S RSL++
Sbjct: 636 MAQIGCFVPAESASIGVVDKIFTRVGASDNISQGESTFMVEMNEAASILNNLSNRSLVLF 695
Query: 468 DELGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DELGR TS+ DG +IAW+ E++ +S KA T+FA+H L+E+ + +K + V
Sbjct: 696 DELGRGTSTYDGISIAWAIVEYIHEQVSCKAKTLFATHYHELNEMEKSFHRIKNYNVSVK 755
Query: 525 IRNNRLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+ ++ F +L + G H +G+ +A++AG+P ++++ + I ++
Sbjct: 756 EVDKKVIFLRKLVRGGSEH--SFGIHVAKMAGMPQSIVKRSEQILKQL 801
>gi|269121342|ref|YP_003309519.1| DNA mismatch repair protein MutS [Sebaldella termitidis ATCC 33386]
gi|268615220|gb|ACZ09588.1| DNA mismatch repair protein MutS [Sebaldella termitidis ATCC 33386]
Length = 868
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 190/596 (31%), Positives = 297/596 (49%), Gaps = 65/596 (10%)
Query: 3 IDATSVRNLEIIE-PLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
I++T+ RNLE+ +GT L +L KT GTR L+ + PL +IE I
Sbjct: 268 INSTTRRNLELTRNQREKTSYGT------LLWVLDKCKTSMGTRFLKKIINNPLLEIEEI 321
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSK-VLDVDNAKKSQ 120
R D L M N +R+ KE + +++ K VL +N K
Sbjct: 322 KKRQDDLQYFMDN--------ILIREEIKEK----LGEVYDLERLAGKIVLGNENGKDLT 369
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L SII ++L+ + FL + + + + IR I E I ED
Sbjct: 370 ALKKSII---SSLEIM-----------DFLRETAFFTGIDTKTLTQIRDIIEESIKEDA- 414
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
PF R IK G + LD + + + + + +E + NLK+ +N
Sbjct: 415 ----PFSIREGNI--IKRGYNQELDEIFKIMSSGKDYLLEIEAREKERTGIKNLKIKYNK 468
Query: 241 RQGFYLSIPH--KDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECY 293
G++L + + KD+ +P +I+ N T EL +N ++K E Y
Sbjct: 469 VFGYFLEVSNSNKDL---VPEDYIRKQTLSNAERYITEELKEYEDKIINSKSKVEEIEYY 525
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ EI I+E VL L+E+L LD+I+ SFA T + Y RP F ++
Sbjct: 526 LFKEIS-----GKIKEKREVLNKLSEILAYLDVII-SFAVTAIE---NNYVRPEFVDDYV 576
Query: 354 LAIDGGRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
+ I+ GRHP++E + DF+ NN+ + N +I+TGPNM+GKSTY++Q+ LI ILAQI
Sbjct: 577 IEIEEGRHPVVEKLIGREDFVSNNVRMDREGNFIILTGPNMAGKSTYMKQIGLIQILAQI 636
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G YVPA + + +VD+I TR+G D++ S STFM EM E + ++ + +ERSLI++DE+G
Sbjct: 637 GSYVPAQSARLSIVDKILTRIGAADDIVSGQSTFMVEMSEVSNIINSATERSLIILDEVG 696
Query: 472 RATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS+ DG +IA + E++ +KA TIFA+H L+EL + ++ V R+N +
Sbjct: 697 RGTSTFDGISIATAITEYIHDKIKAKTIFATHYHELTELEEKFDSILNYRIEVEERSNSV 756
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-KEVKRMEINCLQ 585
F ++ G YG+ +A +AGLP V+ ++ I + K KE+ +N Q
Sbjct: 757 VFLRKIVRGGAD-KSYGIEVARLAGLPKEVLLNSKKILRGLEKRKELIEKTVNVEQ 811
>gi|226723065|sp|B8CJQ5.1|MUTS_SHEPW RecName: Full=DNA mismatch repair protein MutS
gi|212555698|gb|ACJ28152.1| MutS 1 protein [Shewanella piezotolerans WP3]
Length = 860
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 178/570 (31%), Positives = 284/570 (49%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L G +N +L +L +T T G+R+L+ L QPL+D + I
Sbjct: 271 LDAATRRNLELTVNLQG---GHTN---TLASVLDSTVTAMGSRMLQRWLHQPLRDHQVIK 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + EL++ E L++ L+ + +R+ + NA+
Sbjct: 325 ARQSSIAELIATENYQL-LAEDLKAL-GDVERITARIALR------------NARPR--- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ AL LP L + LK + L +Y S + IGE +E L +
Sbjct: 368 --DFARLRQALGLLPQLQQTLKASSEPHL-----------QYLS--QVIGEFPEELALLS 412
Query: 183 RV-----PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
R P + R I+ G D LD R ++ + L + +E+ + LK+
Sbjct: 413 RAVVDNPPMLIR--DGGVIRDGYDAELDEWRVLSAGATDYLTQLEAREKEQTGISTLKVG 470
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N G+Y+ + ++ +P ++ + N EL + S+ G+ +
Sbjct: 471 YNRVHGYYIEVSRRE-SDLVPLSYQRRQTLKNTERYIIAELKEHEEKVLSSQGKALALEK 529
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D I + L A LD++ N FA T Y P ++ + ++
Sbjct: 530 QLWEELFDLILPKLHELQEFATAAAELDVLCN-FAECAETL---NYACPELSDASGIHVE 585
Query: 358 GGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + + FI N + ++ M+IVTGPNM GKSTY++Q+ LI ++A IGCYVP
Sbjct: 586 AGRHPVVEQVSQSPFIANPVTLNSQRKMLIVTGPNMGGKSTYMRQIALITLMAHIGCYVP 645
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I VDRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 646 AEHAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMDEIGRGTST 705
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AWS E+L +L A T+FA+H L++L NV+ +H V + + F
Sbjct: 706 YDGLSLAWSAAEYLANNLNAMTLFATHYFELTQLPEQIKNVENVHLDAVEHGDSIVFMHA 765
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++GP YGL +A +AG+P++VI A+
Sbjct: 766 VQEGPASR-SYGLQVAALAGVPNSVICAAK 794
>gi|331084834|ref|ZP_08333922.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410928|gb|EGG90350.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 885
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 177/587 (30%), Positives = 296/587 (50%), Gaps = 55/587 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D++S RNLE+ E L K+ SL +L TKT G R+LR+ + QPL D
Sbjct: 270 MLLDSSSRRNLELCETLRE-----KQKRGSLLWVLDKTKTAMGARMLRSYIEQPLIDRHE 324
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ ++EL + +E R + +++ S+V + +
Sbjct: 325 IEQRLEAVEELKD------------KAISREEIREYLSPVYDLERLISRV--TYQSANPR 370
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LIS + +L+ LP + +L + LL I CE + + ++++E ++
Sbjct: 371 DLIS----FRNSLEMLPHIKYILTEMHEELLQQI----CEE---LDTLEDLYQLLNESIM 419
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A ++ IK G D +D+ R++ + + L + RE+ + NLK+ +N
Sbjct: 420 EE--PPLA-MKEGGIIKDGYDADVDMLRQAKTEGKNWLAQLEEEEREKTGIRNLKVKYNK 476
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + +K++ +P + + N T L L A + Y
Sbjct: 477 VFGYYLEVTNAYKEL---VPDYYTRKQTLANAERFITPRLKELEDTILGAEDKLYALEYT 533
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ D I +V + A+ + +D+ F + Y RP E G + I G
Sbjct: 534 LYCKVRDRIASEVLRVQKTAKAVAKIDV----FTSLALVAERNNYVRPKINEKGLIDIKG 589
Query: 359 GRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + D FI N+ + + N V I+TGPNM+GKSTY++Q LIV++AQIG +V
Sbjct: 590 GRHPVVEKMTPDNMFIANDTLLDDKKNRVSIITGPNMAGKSTYMRQSALIVLMAQIGSFV 649
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I + DRIFTR+G D+L S STFM EM E A +++N + SL+++DE+GR TS
Sbjct: 650 PADSANIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSSSLLILDEIGRGTS 709
Query: 476 SSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAW+ EH+ + L A T+FA+H L+EL +V ++ + ++ D
Sbjct: 710 TFDGLSIAWAVVEHISNKKLLGAKTLFATHYHELTELEGKLDSVN--NYCIAVKEQGDDI 767
Query: 533 KFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F +K G YG+ +A++AG+P +VI A+ I +++ ++
Sbjct: 768 VFLRKIVKGGAD--KSYGIQVAKLAGVPESVIARAKEIVGELSEADI 812
>gi|160939142|ref|ZP_02086493.1| hypothetical protein CLOBOL_04036 [Clostridium bolteae ATCC
BAA-613]
gi|158438105|gb|EDP15865.1| hypothetical protein CLOBOL_04036 [Clostridium bolteae ATCC
BAA-613]
Length = 881
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 183/615 (29%), Positives = 304/615 (49%), Gaps = 78/615 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ RNLE++E + K+ +L +L TKT G RLLRA + QPL +
Sbjct: 261 MVIDTSTRRNLELVETMRE-----KQKRGTLLWVLDKTKTAMGARLLRACIEQPLIHRDE 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + ++EL N + ++L + +R++ +K T+ D
Sbjct: 316 IIKRQNAVEELNMNYISREEICEYLNPI-YDLERLIGRISYK----TANPRD-------- 362
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I +++L+ LP + ++L + S LLA + R E + I + IG+ I E+
Sbjct: 363 -----LIAFRSSLEMLPYIKRILGEFNSELLAELGR---ELDPLQDIFQLIGDAIVEEP- 413
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P R + IK G + D R + + + L K +E+ + LK+ FN
Sbjct: 414 ----PITVR--EGGIIKDGYNQEADKLRHAKTEGKNWLAELEAKEKEKTGIKTLKVKFNK 467
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGE---- 291
G+Y + + + ++P +I+ N +T EL L K + E
Sbjct: 468 VFGYYFEVTNS-FKDQVPDYYIRKQTLTNAERFTTDELKQLEDIIMGAEEKLVSLEYDLF 526
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLA-EVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
C +R +I E IR + ++ +V C L ++ Y +P +
Sbjct: 527 CEVRDKIGAEV----IRIQKTAKSIAGIDVFCSLSVVATR----------RNYVKPSIND 572
Query: 351 NGPLAIDGGRHPILESIHND--FIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVI 407
G + I GRHP++E + D F+ N+ F+ N + ++TGPNM+GKSTY++QV LIV+
Sbjct: 573 KGVIQIKNGRHPVVEQMMRDDMFVANDTFLDNGKNRLSVITGPNMAGKSTYMRQVALIVL 632
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+G +VPA + I + DRIFTR+G D+L S STFM EM E A +++N + SL+V+
Sbjct: 633 MAQLGSFVPAQEADIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRNSLLVL 692
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAW+ EH+ + L A T+FA+H L+EL VK ++ +
Sbjct: 693 DEIGRGTSTFDGLSIAWAVIEHISNSKLLGAKTLFATHYHELTELEGTIAGVK--NYCIA 750
Query: 525 IRNNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-------K 574
++ D F ++ G YG+ +A++AG+P +VI A+ I ++ K
Sbjct: 751 VKEQGDDIVFLRKIVRGGADK--SYGIQVAKLAGVPDSVIARAKEIAEELSDADITARAK 808
Query: 575 EVKRMEINCLQYKQI 589
E+ + N Q+K +
Sbjct: 809 EIAEISSNITQHKAV 823
>gi|354569173|ref|ZP_08988330.1| DNA mismatch repair protein mutS [Fischerella sp. JSC-11]
gi|353538923|gb|EHC08428.1| DNA mismatch repair protein mutS [Fischerella sp. JSC-11]
Length = 873
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 181/594 (30%), Positives = 291/594 (48%), Gaps = 61/594 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLEI + + + SL L T T G+R LR LLQPL DI+
Sbjct: 303 MIVDHQTRRNLEITQTVRDGSF-----HGSLLWALDRTSTAMGSRALRRWLLQPLLDIKG 357
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D + EL+ N L L Q LR+ + +++T + A +
Sbjct: 358 IRARQDTIQELVENTPLRQDLRQLLRQI------------YDLERLTGR------AGSGR 399
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ L ++ LP LA ++ D S L + +K + +G+ I ++
Sbjct: 400 ANAKDLVALADSVSKLPELALLVMDTASPFLKAL-------QKVPPGLEELGQKIRSYIV 452
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEA-VHNLANKYREELKLPNLKLPFN 239
+ P + ++ I+ G++ LD ARR+ + + + NL + R + LK+ FN
Sbjct: 453 ES--PPI-HIKEGGLIRQGVNPQLD-ARRALVEEDQKWIANLEVEERARTGIQTLKVGFN 508
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+SI + ++PS +I+ N T EL R +A + ++
Sbjct: 509 KTFGYYISISRAKVD-QVPSNYIRKQTLTNEERYITPELKEREARILTARDDL---NQME 564
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E V A+RE+V+ + L V+ Y RP E + + G
Sbjct: 565 YEIFV-ALREEVAAQAEVIRNLSRAVAAVDVLCGLAELAVYQGYCRPEMVEGREIYVVDG 623
Query: 360 RHPILES--IHNDFIPNNIFISE-----------------AANMVIVTGPNMSGKSTYLQ 400
RHP++E F+PN+ + + +++I+TGPN SGKS YL+
Sbjct: 624 RHPVVEQSLPMGFFVPNSTQLGGMNRHDAKDAKEEEEERVSPDLIILTGPNASGKSCYLR 683
Query: 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460
QV LI ++AQIG +VPA ++ + V DRIFTR+G VD+L + STFM EM ETA ++ + +
Sbjct: 684 QVGLIQLMAQIGSFVPARYAKLSVCDRIFTRVGAVDDLATGQSTFMVEMNETANILNHAT 743
Query: 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKIL 519
RSL+++DE+GR T++ DG AIAW+ E+L + + A TIFA+H L+ELA++ PNV
Sbjct: 744 SRSLVLLDEIGRGTATFDGLAIAWAVAEYLAAEIGARTIFATHYHELNELASLLPNVANY 803
Query: 520 HFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
V +++ F Q++ G YG+ +AGLP VI+ A+ + +I K
Sbjct: 804 QVTVKELPDQIIFLHQVQPGGAD-KSYGIEAGRLAGLPGVVIQRAKQVMGQIEK 856
>gi|358011983|ref|ZP_09143793.1| DNA mismatch repair protein MutS [Acinetobacter sp. P8-3-8]
Length = 881
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 173/595 (29%), Positives = 302/595 (50%), Gaps = 62/595 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEII+PL GTS LFH++ +T G RLL L+QP++D ++
Sbjct: 277 LDPVTRRNLEIIDPLFE--HGTS-----LFHLINDCQTAMGGRLLARTLMQPIRDTHLLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +D FL+ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAID-------------AFLQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L+ A +P L ++ + +K +++ E+ D + LH
Sbjct: 373 --DLVQLRQACAQIPFLRHAIQ------------PILNTKKSVFVQQLNEELGDFNGLHQ 418
Query: 183 RV--------PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
R+ P + R A G D LD R+ + + +L K RE + L
Sbjct: 419 RLQSAIVEHPPVLLRDGNVIA--EGFDDELDELRKIRDHAGQFLIDLEIKEREATGINTL 476
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
K+ +N G+Y+ + + + P +I+ N T EL S + S+
Sbjct: 477 KIGYNRVSGYYIELTRAQAE-QAPDHYIRRQTLKNAERYITPELKSFEDKVLSSESRALA 535
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
R ++ E L+D ++ D+ L +++ + +DM+ N FAH + + RP ++ +
Sbjct: 536 REKLLFEMLLDELKADIGHLQMMSASISHIDMLCN-FAHQAR---LHSWHRPEYSPEIGI 591
Query: 355 AIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GRHP++E+++ + PN+ + M I+TGPNM GKST+++Q LI +LA G
Sbjct: 592 KITAGRHPVVEALNKAPYTPNDTLLDFNHRMAIITGPNMGGKSTFMRQTALISLLAYCGS 651
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR
Sbjct: 652 FVPAKAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRG 711
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRL 530
TS+ DG ++AW+C L +K +FA+H L+ELA I +++V + N L
Sbjct: 712 TSTYDGLSLAWACVLDLTKRIKCLCLFATHYFELTELAK---ESAIDNYHVTAKELNGNL 768
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ 585
+++ GP H GL +A++AG+P++VI+ A+ +I +K+ + IN +Q
Sbjct: 769 ILLHKVQHGPASQSH-GLQVAKLAGIPASVIKEAQK-RLKILEKQQLQQPINVVQ 821
>gi|336314960|ref|ZP_08569874.1| DNA mismatch repair protein MutS [Rheinheimera sp. A13L]
gi|335880787|gb|EGM78672.1| DNA mismatch repair protein MutS [Rheinheimera sp. A13L]
Length = 861
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 174/578 (30%), Positives = 285/578 (49%), Gaps = 49/578 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L +L +L +T G+RLL+ + PL+D +
Sbjct: 273 LDAATRRNLELTQTLAGQF------DHTLAAVLDQCQTAMGSRLLKRWIHAPLRDQALVT 326
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + EL + Q Q L K +T+RV+ + +++ D
Sbjct: 327 GRHQAVAELQQHHQNL----QPLFKQVGDTERVIARLALR----SARPRDFSR------- 371
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ AL LP L+ L QS LLA + + C+ + E+ D E +
Sbjct: 372 ------LRAALQLLPELSPELSQLQSPLLAQL-TAKCQP---------LPELCDLLERAI 415
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + R A G + LD R ++ + L + +E + +LK+ FN
Sbjct: 416 VETPPMLIRDGGVIA--SGYNAALDQWRELATGATDYLERLEQREKERTGIASLKVGFNR 473
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + ++P+ +I+ NN EL + + + +
Sbjct: 474 VAGYYIET-GRSAADQVPADYIRRQTLKNNERFIIPELKEYEDKVLGSQSKALALEKQLY 532
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L D ++ L L+ L LD++ N FA Y +P T + I+ GR
Sbjct: 533 EELFDLTAPYLAELQQLSAALAELDLLTN-FAERAEQL---NYHQPELTPEPGIQIEAGR 588
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + + FI N + +S M+++TGPNM GKSTY++Q LIV++A IG +VPA
Sbjct: 589 HPVVEQVMTEPFIANPLKLSPERRMLMITGPNMGGKSTYMRQNALIVLMAYIGSFVPAER 648
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ + VDRIFTR+G D+L S STFM EM ETA ++ + + +SL++MDE+GR TS+ DG
Sbjct: 649 AVLGPVDRIFTRVGASDDLASGRSTFMVEMTETATILHHATAQSLVLMDEIGRGTSTYDG 708
Query: 480 FAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
++AW+C E+L LKA T+FA+H L+ELA+ + +H V + + F Q++D
Sbjct: 709 LSLAWACAEYLAQQLKAMTLFATHYFELTELASQLQGLANIHLDAVEHDEHIVFMHQVQD 768
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
G YGL +A++AG+P VI+ A+ +++ ++ V
Sbjct: 769 GAAS-KSYGLQVAQLAGVPRIVIQKAKQKLAQLEQQSV 805
>gi|317472765|ref|ZP_07932077.1| DNA mismatch repair protein MutS [Anaerostipes sp. 3_2_56FAA]
gi|316899757|gb|EFV21759.1| DNA mismatch repair protein MutS [Anaerostipes sp. 3_2_56FAA]
Length = 872
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 182/590 (30%), Positives = 296/590 (50%), Gaps = 61/590 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID++S RNLE+ E L KK SL +L TKT G RLLR+ + QPL D
Sbjct: 267 MIIDSSSRRNLELCETLRD-----KKKKGSLLGVLDKTKTAMGARLLRSMIEQPLIDRVK 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D L L + +E R + + +++ +KV Q
Sbjct: 322 IEERYDALTSLTK------------QAIAREEIREYLNPVYDLERLMTKV-------SYQ 362
Query: 121 TL-ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
T+ +I LK +L LP + +L++ LL+ + + E A + +++ +
Sbjct: 363 TINPRDMIALKVSLQWLPPIKTILEECGDSLLSGLREDLDTLEDVAGL-------LEDAI 415
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
L P +A ++ IK G +D +R+ D + + L + R + LK+ FN
Sbjct: 416 LEE--PSIA-VKEGGIIKDGFSEQIDQLKRAKTDGKQWLMQLEERERRATGIKTLKVKFN 472
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAA--GEC 292
G+YL + + + K+P +I+ N+ +T EL L ++ A E
Sbjct: 473 KVFGYYLDVTNS-YKDKVPEHYIRKQTLTNSERYTTEELNKLADTILGAEDRLCALEYET 531
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
+ L ++ I++ V+ L +VLC L + + Y RP G
Sbjct: 532 FASIRETLAGEMERIKKTAGVIAYL-DVLCSLACVAEQ----------NGYVRPKLNTKG 580
Query: 353 PLAIDGGRHPILESI-HND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILA 409
+ I GRHP++E + ND FI N+ ++ + V I+TGPNM+GKSTY++Q LIV++A
Sbjct: 581 LIDIKEGRHPVVEQMMSNDMFISNDTYLDSKRHRVSIITGPNMAGKSTYMRQSALIVLMA 640
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
QIG +VPA + I +VDRIFTR+G D+L S STFM EM E A +++N ++ SL+++DE
Sbjct: 641 QIGSFVPAQKANIGIVDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATKDSLLILDE 700
Query: 470 LGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
+GR TS+ DG +IAW+ E++ + L A T+FA+H L+EL +V V +
Sbjct: 701 IGRGTSTYDGLSIAWAVVEYISNPKLLGAKTLFATHYHELTELEGKIGSVNNYCIAVKEQ 760
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ + F ++ G YG+ +A++AG+P VI+ A+ I S ++ ++
Sbjct: 761 GDNIVFLRKIVKGGAD-KSYGIQVAKLAGVPDMVIQRAKEIVSELSDSDI 809
>gi|302386431|ref|YP_003822253.1| DNA mismatch repair protein MutS [Clostridium saccharolyticum WM1]
gi|302197059|gb|ADL04630.1| DNA mismatch repair protein MutS [Clostridium saccharolyticum WM1]
Length = 884
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 182/607 (29%), Positives = 309/607 (50%), Gaps = 65/607 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ RNLE++E L K+ SL +L TKT G R+LR + QPL
Sbjct: 267 MIIDTSTRRNLELLETLRE-----KQKRGSLLWVLDRTKTAMGARMLRTYIEQPLIHKPE 321
Query: 61 INTRLDCLDEL----MSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNA 116
I R + ++EL +S E++ ++L + +R++ +K T+ D
Sbjct: 322 ITKRQNAIEELNMSFISREEI----CEYLNPI-YDLERLIGRISYK----TANPRD---- 368
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
+I K++L+ LP + +LK+ S +L +++ E + +R+ IG I
Sbjct: 369 ---------LIAFKSSLEMLPHIKNLLKEFSSDMLKDLW---GELDPLEDVRELIGRAII 416
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
+D P R I+ G D R + + + +L ++ +E+ + NLK+
Sbjct: 417 DDP-----PVTLRDGGI--IRDGFHEEADKLRSAKTEGKNWLADLESQEKEKTGIKNLKV 469
Query: 237 PFNNRQGFYLSIPH--KDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
FN G+Y + + KD+ +P FI+ N +T +L L A + +
Sbjct: 470 KFNKVFGYYFEVTNSFKDL---VPDYFIRKQTLANAERYTTDQLKELENVILGAEDKLFS 526
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
+ D++ + V + A + +D++ + +++T+ + Y +P E G +
Sbjct: 527 LEYSLFCQVRDSVADQVLRIQKTARAIAGIDVLTS--LSSVATR--NNYVKPQINEKGLI 582
Query: 355 AIDGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQI 411
I GRHP++E + D F+ N+ ++ N V I+TGPNM+GKSTY++Q LIV+LAQI
Sbjct: 583 DIKNGRHPVVEKMMRDDLFVSNDTYLDNGKNRVSIITGPNMAGKSTYMRQTALIVLLAQI 642
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + I + DRIFTR+G D+L S STFM EM E A +++N ++ SLIV+DE+G
Sbjct: 643 GSFVPAEEANIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATKNSLIVLDEIG 702
Query: 472 RATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
R TS+ DG +IAW+ EH+ + L A T+FA+H L+EL V ++ + ++
Sbjct: 703 RGTSTFDGLSIAWAVVEHISNPKILGAKTLFATHYHELTELEGTMSGVN--NYCIAVKEQ 760
Query: 529 RLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV--KRMEINC 583
D F +K G YG+ +A++AG+P +VI A+ + + ++ ++ K EI
Sbjct: 761 GDDIVFLRKIIKGGADK--SYGVQVAKLAGVPDSVIVRAKELLAELSDADITAKAREIAG 818
Query: 584 LQYKQIQ 590
+ IQ
Sbjct: 819 INANIIQ 825
>gi|237800178|ref|ZP_04588639.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331023035|gb|EGI03092.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 859
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 174/590 (29%), Positives = 289/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAATRRNLELDINL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLPILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C + E L L + + +R+L + NA+
Sbjct: 324 ARQTSIACFLDRYRFEHLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L K + D + L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQKAMADLDTPHLQQLAQTASTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPPDYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YEALLEDLIGHLAPLQDTAGALAELDVLSNLAERALNLD----LNCPRFVTEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVNNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVITRA--------KEHLQRLETTSLPHEQ 807
>gi|347522503|ref|YP_004780074.1| DNA mismatch repair protein MutS [Lactococcus garvieae ATCC 49156]
gi|385833887|ref|YP_005871662.1| DNA mismatch repair protein MutS [Lactococcus garvieae Lg2]
gi|343181071|dbj|BAK59410.1| DNA mismatch repair protein MutS [Lactococcus garvieae ATCC 49156]
gi|343183040|dbj|BAK61378.1| DNA mismatch repair protein MutS [Lactococcus garvieae Lg2]
Length = 835
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 190/617 (30%), Positives = 308/617 (49%), Gaps = 62/617 (10%)
Query: 19 SALWGTSNKKR-----SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMS 73
S+L T+NK+ +L+ +L TKT GTRLLR+ + +PL + IN R D + +
Sbjct: 252 SSLELTANKREGKKHGTLYWLLDETKTAMGTRLLRSWVDRPLISADAINKRADVVQLFVD 311
Query: 74 NEQLFFGLSQFLR--KFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKT 131
N FF + + K + +R+ F KVL VD + L+
Sbjct: 312 N---FFERADLIEALKGVYDLERLASRVSF------GKVLPVD-----------YLQLEN 351
Query: 132 ALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVIDEDVLHARVPFVART 190
+L +P + VL + +L + + E E A IR+ I E + V
Sbjct: 352 SLSNVPGIKNVLLTMNNPVLEPLISQLDEIPELIALIRQAIDESAQRVITEGGV------ 405
Query: 191 QQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPH 250
IK G + LD R + + + + L K + + L++ FN + G+Y I
Sbjct: 406 -----IKSGYNAQLDKYREALTNGTSWIAELEAKEKANTGISTLRIDFNRKDGYYFHITQ 460
Query: 251 KDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYIRTEICLEALVD 305
+ G +P F + N+ + ELA L R KS+ E + ++ E
Sbjct: 461 SQL-GSVPDHFYRKATLKNSERFGSKELAEIEEIMLEAREKSSVLEYDLFAQVRTET--- 516
Query: 306 AIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILE 365
+ +S L LA+ + +D + S A T++ K +YTRP FT + I GRHP++E
Sbjct: 517 --EQYISRLQKLAKAIASIDCL-QSLA-TVAEKY--QYTRPIFTLERKVNIVKGRHPVVE 570
Query: 366 SI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR 423
S+ +++PN+I + + ++TGPNMSGKSTY++Q +IVI+AQIG +VPA + +
Sbjct: 571 SVLGAQEYVPNDIKLPNQTAIQLITGPNMSGKSTYMRQFAMIVIMAQIGSFVPAELAELP 630
Query: 424 VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIA 483
+ D IFTR+G DNL S STFM EM E +Q+ + SLI+ DELGR T++ DG A+A
Sbjct: 631 IFDAIFTRIGASDNLISGESTFMVEMMEANHAIQHATPHSLIIFDELGRGTATYDGMALA 690
Query: 484 WSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRH 542
S E++ ++ A T+FA+H L+ELA ++ +H + + + F ++ +GP
Sbjct: 691 QSIIEYIHDNIHAKTLFATHYHELTELADSLEELENVHVATLEKGGDVTFLHKITEGPAD 750
Query: 543 VPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAA--QRLI 600
YG+ +A++AGLP+ ++E A I ++ K V + ++ +Q+ + Q LI
Sbjct: 751 -KSYGIHVAKIAGLPTKLLERADIILQKLENKPVMS-KAPVVEKEQLSLFTFEDNHQELI 808
Query: 601 -CLKYSNQDEESIRHAL 616
LK +N D + R AL
Sbjct: 809 EMLKETNVDNMTAREAL 825
>gi|398801677|ref|ZP_10560915.1| DNA mismatch repair protein MutS [Pantoea sp. GM01]
gi|398091361|gb|EJL81806.1| DNA mismatch repair protein MutS [Pantoea sp. GM01]
Length = 847
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 179/569 (31%), Positives = 281/569 (49%), Gaps = 51/569 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L + + +L +L T T G+R+L+ L PL+D+ TI
Sbjct: 265 MDAATRRNLEITQNLAGGI------ENTLAAILDKTVTPMGSRMLKRWLHMPLRDVSTIA 318
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + EL S Q L LR+ + +R+L + T++ D+
Sbjct: 319 RRQESIAELQSLSQ---ELQPVLRQV-GDLERILARLALR----TARPRDLAR------- 363
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L + L ++ L N+ + E + +R+ + + I E
Sbjct: 364 ------MRHAFQQLPELNQQLAGVEATQLINLRSQMGE---FNELRELLEQAIIESP--- 411
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE+L L LK+ FN
Sbjct: 412 --PVLVRDGGVIA--PGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGFNAIH 467
Query: 243 GFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ + Q L P +++ N EL + ++ G+ + E
Sbjct: 468 GYYIQVSRG--QSHLVPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKGLYE 525
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L D + + L + A L LD++ N A T++ Y RP E + I G
Sbjct: 526 DLFDRLLPHLEALQISAAALSELDVLANLAERAWTLN------YCRPVLQEKAGIRITAG 579
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + + FI N + +S M+I+TGPNM GKSTY++Q LI ++A IG YVPA
Sbjct: 580 RHPVVEQVLKEPFIANPLSLSPQRRMLIITGPNMGGKSTYMRQTALIALMAWIGSYVPAE 639
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ D
Sbjct: 640 ETVIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYD 699
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L + +KA T+FA+H L+ L V +H V + + F ++
Sbjct: 700 GLSLAWACAESLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAVEHGDTIAFMHSVQ 759
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARS 566
DG YGL +A +AG+P VI+ AR+
Sbjct: 760 DGAAS-KSYGLAVAALAGVPKEVIKRARN 787
>gi|238022953|ref|ZP_04603379.1| hypothetical protein GCWU000324_02875 [Kingella oralis ATCC 51147]
gi|237865761|gb|EEP66899.1| hypothetical protein GCWU000324_02875 [Kingella oralis ATCC 51147]
Length = 853
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 169/570 (29%), Positives = 281/570 (49%), Gaps = 58/570 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI L + K +LF L T G+RLL L PL++ + I
Sbjct: 264 LDAATRRNLEITTTL------SGKKAPTLFSTLDNCATHMGSRLLAQWLHHPLRNRDHIQ 317
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTS---KVLDVDNA 116
RLD + L+++ LS L+ + +R+ +P+ +++ +L +
Sbjct: 318 ARLDAVAALLAD-NTSTELSGSLKTI-ADLERIAARIALGSARPRDLSALRDSLLALATF 375
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
+ Q+ LL+T D+ P A + + Q LL S+ + G VI+
Sbjct: 376 RLPQS-----PLLQTLGDSFPATAAIAEHLQRALLPE-----------PSVWLKDGNVIN 419
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
G LD R SE + + + R+ + +LKL
Sbjct: 420 H---------------------GYHAELDELRHLHTHGSETLRQMEEQERQNTGIGSLKL 458
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N GFY+ + + P+ + + N T EL + + +A
Sbjct: 459 EYNRVHGFYIELSKAQAE-HAPAHYQRRQTLKNAERFITPELKAFEDKYLAAQERSLALE 517
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ E L+ +++++ + A LD ++NSFAHT ++ YTRP FT++ L I
Sbjct: 518 KQLYEELLRQLQKELPKIQRSARAAATLD-VLNSFAHTARSQ---NYTRPQFTDHSSLHI 573
Query: 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E F PN+ ++ + + ++TGPNM GKSTY++QV LI +LA G Y+P
Sbjct: 574 QNGRHPVVEQQVQHFTPNHTQLTPSRRLTLLTGPNMGGKSTYMRQVALIALLAHTGSYIP 633
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +TI +D+I TR+G D+L N STFM EM ETA+++ + + +SL++MDE+GR TS+
Sbjct: 634 AQAATIGTIDQIHTRIGASDDLAGNRSTFMVEMSETAYILHHATAQSLVLMDEVGRGTST 693
Query: 477 SDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG A+A + EHL+S ++ T+FA+H L+ L +P+ +H + + + F
Sbjct: 694 FDGLALAQAIAEHLISKNQSLTLFATHYFELTRLPENHPSAFNMHLSALEQGQDIVFLHH 753
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
++ GP YG+ +A++AG+PS + TAR
Sbjct: 754 IEAGPAEKS-YGIAVAKLAGIPSRTLNTAR 782
>gi|423013155|ref|ZP_17003876.1| DNA mismatch repair protein MutS [Achromobacter xylosoxidans AXX-A]
gi|338783892|gb|EGP48245.1| DNA mismatch repair protein MutS [Achromobacter xylosoxidans AXX-A]
Length = 884
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 181/605 (29%), Positives = 281/605 (46%), Gaps = 66/605 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+ + L + +LF +L +T G+RLLR L PL++ E +
Sbjct: 276 LDPVTRRNLELTQTL------SGEDSPTLFSLLDGCRTPMGSRLLRRWLHHPLRENEQAH 329
Query: 63 TRLDCLDELMSN----EQLF--FGLSQFLR----KFPKETDRVLCHFCFK---PKKVTSK 109
R + L++ EQ F GL + LR FP + +R+ + P+++ S
Sbjct: 330 ARQQAISTLLAGRMDVEQTFGSAGLLETLRGALNAFP-DIERIAARLALRSVRPRELAS- 387
Query: 110 VLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKD-AQSFLLANIYRSVCENEKYASIR 168
L+ AL ALP L ++ A S L ++ + + A++
Sbjct: 388 -------------------LRDALQALPALRDLVAPMAASPRLNDLISHLSVDPALAALL 428
Query: 169 KRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREE 228
R A P VA + + G D LD R D + + L + RE
Sbjct: 429 VRA---------IAAEPAVA-IRDGGVLAAGFDAELDELRGLAADGGDFLVQLEARERER 478
Query: 229 LKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSA 288
+ NL++ FN GFY+ + K K+P + + N T EL + + SA
Sbjct: 479 TGISNLRVEFNRVHGFYIEV-TKGQTAKVPEDYRRRQTLKNAERYITPELKTWEDKVLSA 537
Query: 289 AGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
R + E L+D + E V L+ A L LD + H + P
Sbjct: 538 QDRSLAREKWLFEQLLDVLAEHVRPLSDCAGALAELDTLAALAEHARRHD----WIAPEL 593
Query: 349 TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
+E + ID GRHP++E F PN + A M+++TGPNM GKSTY++QV LIV+L
Sbjct: 594 SEQADIDIDAGRHPVVEQAIERFTPNGCRLDPARRMLLITGPNMGGKSTYMRQVALIVLL 653
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
A+IG +VPA + I +DRIFTR+G D+L STFM EM E A ++ + SL++MD
Sbjct: 654 ARIGSFVPAARARIGRIDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAASTPNSLVLMD 713
Query: 469 ELGRATSSSDGFAIAWS-CCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS+ DG A+AW+ C L +A T+FA+H L+ L P +H
Sbjct: 714 EIGRGTSTYDGLALAWAIACRLLAHNRALTLFATHYFELTRLPAEQPASANVHLAAAESA 773
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
+ F ++++GP YG+ +A+ AG+P+ VI R +E++R+E
Sbjct: 774 GGIVFLHEVREGPASR-SYGIQVAQRAGVPAAVI--------RQATRELERLEAQGAPTP 824
Query: 588 QIQML 592
Q+ +
Sbjct: 825 QLGLF 829
>gi|448746503|ref|ZP_21728170.1| DNA mismatch repair protein MutS, type 1 [Halomonas titanicae BH1]
gi|445565841|gb|ELY21949.1| DNA mismatch repair protein MutS, type 1 [Halomonas titanicae BH1]
Length = 853
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 183/621 (29%), Positives = 296/621 (47%), Gaps = 51/621 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S RNLEI L G+S+ +L +L T T G+RLL+ L +PL+ E +
Sbjct: 267 IDAASRRNLEI----DINLGGSSDN--TLASVLDTCTTAMGSRLLKRWLNRPLRQREIVQ 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCH---FCFKPKKVTSKVLDVDNAKKS 119
R + L+S + + L + L + +R+L + +P+ +
Sbjct: 321 ARHAGV-ALLSLDAAYMPLRETLSAV-GDVERILARVALYSARPRDLAR----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSF-LLANIYRSVCENEKYASIRKRIGEVIDED 178
L+ AL LP L + L + +S L N+ + + A + R
Sbjct: 368 ---------LRDALVTLPELEQQLSEVESGSALDNLRPHIRPYPEMADMLSR-------- 410
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
L P V R A G D LD R + + + L + RE L NLK+ +
Sbjct: 411 ALVENPPVVIRDGGVIA--DGFDSELDEHRGMAENAGDYLIQLELRERERTGLANLKVGY 468
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+++ +P Q + P+ +I+ N EL + SA R +
Sbjct: 469 NRVHGYFIELPRSQAQ-QAPADYIRRQTLKNAERFIIPELKEFEDKALSAKSRALTREKW 527
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L+ + + L ++ L LD++ +FA + RP +E + ID
Sbjct: 528 LYDRLLGDLNASLHALQSTSQALAELDVLC-AFAERAEAL---NWVRPTLSETTGIQIDA 583
Query: 359 GRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E + F+PN++ ++ +M+I+TGPNM GKSTY++Q LI +LA G +VPA
Sbjct: 584 GRHPVVEQVSETPFVPNDVTLNPDQHMLIITGPNMGGKSTYMRQTALIALLAHCGSFVPA 643
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I +DRIFTR+G+ D+L STFM EM ETA ++ N +++SLI+MDE+GR TS+
Sbjct: 644 DAAEIGPLDRIFTRIGSSDDLAGGRSTFMVEMTETANILHNATQQSLILMDEIGRGTSTF 703
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
DG ++AW+ EHL +A T+FA+H ++ L V +H + + F +++
Sbjct: 704 DGLSLAWASAEHLAKGRALTLFATHYFEMTALPEHMEGVANIHLTATEHGDSIVFMHRIE 763
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQ 597
GP YGL +A++AG+P+ VI+ AR + +++V Q L+ AA
Sbjct: 764 AGPASQ-SYGLQVAQLAGVPNHVIKRAREKLISLEQRDVDNTAQAPRTAPQQNDLFAAAP 822
Query: 598 RLICLKYSNQDEESI--RHAL 616
+ N D + + R AL
Sbjct: 823 HPVVEALENVDMDGLTPREAL 843
>gi|302187931|ref|ZP_07264604.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. syringae
642]
Length = 855
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 174/590 (29%), Positives = 289/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 266 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 319
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 320 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 362
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R +ID
Sbjct: 363 -----DLARLRDALSALPELQQAMTDLDAPHLQQLAQTASTYPELADLLQRA--IIDNP- 414
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D L + + + + +L + + L NLK+ +N
Sbjct: 415 -----PAVIRDGGV--LKTGYDAELHDLQSLSENAGQFLIDLEAREKARTGLGNLKVGYN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 468 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 526
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 527 YEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 582
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 583 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 643 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 702
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 703 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHRVLP 762
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 763 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 803
>gi|160947536|ref|ZP_02094703.1| hypothetical protein PEPMIC_01470 [Parvimonas micra ATCC 33270]
gi|158446670|gb|EDP23665.1| DNA mismatch repair protein MutS [Parvimonas micra ATCC 33270]
Length = 861
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 187/589 (31%), Positives = 304/589 (51%), Gaps = 57/589 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ IDA S NLE+ + S ++ SL ++ TKT G RLL L QPL +IE
Sbjct: 265 LRIDANSRINLELKKNNFS-----NDINGSLLSVINHTKTPMGFRLLNKWLDQPLIEIEK 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R +++L+ N L L + L + +R+ F NA+
Sbjct: 320 IQRRQSLVEDLVLNSNLRNKLEELLASIS-DIERINSKISFGNC----------NAR--- 365
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I LK +L A+P + K+ D+ + L +NI ++ + E I I I EDV
Sbjct: 366 ----DLIHLKNSLSAVPKIKKLFLDSNT-LFSNIALNIPDTE---YIYNLIDSAILEDV- 416
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
++ IK G D LD+ R + E + R + NL+L FN
Sbjct: 417 ------GILLKEGNLIKIGYDEELDVIRNNKIVGKEKLIKYEVDQRNITGIKNLRLIFNK 470
Query: 241 RQGFYLSIPHKDIQGKLPSTF--IQVVKHGNNIHCSTLELASLNVRNKSAAGECYI---R 295
+ G++ + K Q +P F Q + + N + L L + N E I
Sbjct: 471 KTGYFFEVT-KSYQNLVPEYFELKQTLTNANRYKTNEL----LTIENMIFGSEIDIIEKE 525
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E+ + ++ + I+ ++ +L L++++ +D I F+ +I + Y +P G +
Sbjct: 526 YELFI-SIRNTIKMNIKILQKLSDIISFIDSI---FSLSIVAFK-NNYCKPTLNSEGIID 580
Query: 356 IDGGRHPILESIH---NDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQI 411
I GRHP++ES N+FIPN+ I ++ N++ I+TGPNMSGKSTY++Q+ LIVILAQI
Sbjct: 581 IKNGRHPVIESFLSSINEFIPNDTNIGQSDNLIQIITGPNMSGKSTYIRQIALIVILAQI 640
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + I +VD+IFTR+G DNL STFM EMKE +++ ++ SL+++DE+G
Sbjct: 641 GSFVPADSANISIVDKIFTRIGASDNLYKGESTFMVEMKEVNNILRYATKNSLLILDEVG 700
Query: 472 RATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVV--IRNN 528
R TS+ DG ++AW+ E++ ++K+ T+FA+H L +L + +K H V+ N+
Sbjct: 701 RGTSTFDGLSLAWAILEYITKNIKSKTLFATHYHELIDLEHTFACIKNKHIQVIEDKEND 760
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
+ F ++ DG + YG+ +A++AGLP VI ++ I I KE++
Sbjct: 761 EIVFLRKIMDGGAN-KSYGIAVAKLAGLPMEVINRSKIILDSIENKEIE 808
>gi|126667870|ref|ZP_01738836.1| DNA mismatch repair protein [Marinobacter sp. ELB17]
gi|126627686|gb|EAZ98317.1| DNA mismatch repair protein [Marinobacter sp. ELB17]
Length = 862
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 169/566 (29%), Positives = 278/566 (49%), Gaps = 43/566 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLEI L + GT + +L ++ T T G R LR L +PL+D+ +
Sbjct: 257 LDAASRRNLEIDTNL---MGGT---QYTLAWVMDRTATAMGGRQLRRWLNRPLRDVAVVR 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + Q K + +R+L + +
Sbjct: 311 QRQQAVSALLKDFDYEPIHDQL--KSIGDIERILARVALRSARP---------------- 352
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A LP L K L S + + ++ E + A + R +ID
Sbjct: 353 -RDLARLRDAFAVLPDLQKALAAVDSTHIGELATTIGEYPQLADLLGRA--IIDNP---- 405
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R + I G D LD R + + + ++ + ++ + LK+ +N
Sbjct: 406 --PVVIR--EGGVIADGFDAELDDLRNISENAGQYLLDVETREKQRTGISTLKVGYNRVH 461
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I + P+ +I+ N T EL + SA R + +
Sbjct: 462 GYYIEISRLQ-SAQAPADYIRRQTLKNAERFITPELKEFEDKALSAKSRALAREKALWDE 520
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
+++ + +++ L A+ L LD++ N FA S+ R P F++ L I+ GRHP
Sbjct: 521 VLETVAAELAPLQDAAQALAELDVLSN-FAERASSL---RLCAPQFSDEPGLQIEEGRHP 576
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + +D F+PNN+ I M+++TGPNM GKSTY++QV LI +LA G +VPA +
Sbjct: 577 VVEQLLDDPFVPNNLLIDAKRRMLVITGPNMGGKSTYMRQVALIALLAYTGSFVPADSAV 636
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ VDRIFTRMG+ D++ STFM EM ETA ++ N ++ SL++MDE+GR TS+ DG +
Sbjct: 637 LGPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATKHSLVLMDEVGRGTSTFDGLS 696
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+ EHL + YT+FA+H L++LA + +H ++ + F + +GP
Sbjct: 697 LAWATAEHLAQDILCYTLFATHYFELTQLADELEHAVNVHLTATEHDDSIVFLHNVHEGP 756
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARS 566
YGL +A++AG+P VI A++
Sbjct: 757 AS-QSYGLQVAKLAGVPVEVIRNAKA 781
>gi|448712106|ref|ZP_21701649.1| DNA mismatch repair protein MutS [Halobiforma nitratireducens JCM
10879]
gi|445791191|gb|EMA41840.1| DNA mismatch repair protein MutS [Halobiforma nitratireducens JCM
10879]
Length = 920
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 170/582 (29%), Positives = 289/582 (49%), Gaps = 59/582 (10%)
Query: 3 IDATSVRNLEIIEP--LHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+DA ++R+LE+ EP +HS +L +L T + G R LR L +PL + +
Sbjct: 311 LDAVALRSLELFEPRAVHS------RDDATLVGVLDETASALGGRKLRDWLRRPLLEPDR 364
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++EL + + L + LR + +++ ++ + +
Sbjct: 365 IEARLDAVEELNGSVRAREKLQELLRD------------VYDLERLIGRI------SRER 406
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ L+ L +P + L+DA L ++ + + A +R+ I + I ED
Sbjct: 407 ANARDLRSLRDTLAVVPDVRAQLEDADCERLEQLHADL---DPLADVREVIDDAIVED-- 461
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + T+ I G DG LD R + D + + +LA + RE + +LK+ +N+
Sbjct: 462 ----PPIEITEGGI-IAEGYDGDLDDLRETARDGKQWIDDLAERERERTGIDSLKVGYNS 516
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + + ++ +P + + N+ T EL R G E+
Sbjct: 517 VHGYYIEVTNPNLD-SVPEDYQRRQTLKNSERFVTPELKE---REDEIVGAEERADELEY 572
Query: 301 EALVD---AIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFTENG---- 352
E D + ++V + LA+ L +D +V ++ST Y RP E
Sbjct: 573 ELFRDVRKTVADEVERVQDLADALATVDALV-----SLSTVAAQYDYARPELLERDRERG 627
Query: 353 ----PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
+ I+GGRHP++E F+PN+ ++ + ++TGPNMSGKSTY++QV IV+L
Sbjct: 628 ERGLEIDIEGGRHPVVERTQASFVPNDARFTDGQRLAVITGPNMSGKSTYMRQVAQIVLL 687
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
+Q+G +VPA + + VDRIFTR+G D++ STFM EM E A +++ ERSL+++D
Sbjct: 688 SQVGSFVPAKSARLTPVDRIFTRVGASDDIAGGRSTFMVEMDELATILREADERSLVLLD 747
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS++DG AIA + EHL + A T+FA+H L+E+ + LHF V +
Sbjct: 748 EVGRGTSTADGLAIAQAITEHLHDEVGATTLFATHHHPLTEVTEQLADAFTLHFEVDQAD 807
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
+ F+ ++ G YG+ +A AG+P V+E +R + +
Sbjct: 808 GEVVFRHEVAPGA-ATGSYGVEVATAAGVPEPVVERSRELVA 848
>gi|404496284|ref|YP_006720390.1| DNA mismatch repair protein MutS [Geobacter metallireducens GS-15]
gi|418064991|ref|ZP_12702367.1| DNA mismatch repair protein MutS [Geobacter metallireducens RCH3]
gi|123572094|sp|Q39VR6.1|MUTS_GEOMG RecName: Full=DNA mismatch repair protein MutS
gi|78193891|gb|ABB31658.1| DNA mismatch repair ATPase MutS-1 [Geobacter metallireducens GS-15]
gi|373563264|gb|EHP89465.1| DNA mismatch repair protein MutS [Geobacter metallireducens RCH3]
Length = 872
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 185/588 (31%), Positives = 292/588 (49%), Gaps = 63/588 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+ +A ++ SL +L T T G R LR + PL +E I
Sbjct: 271 LDEATRRNLEL-----TATLSEGKRRGSLLGLLDRTATAMGGRKLRQWINYPLVIVEKIK 325
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + EL ++ L G+ + L V D++ +L
Sbjct: 326 ERQDAVGELANDPALRAGIREAL----------------------EGVYDLERLNGRISL 363
Query: 123 ISS----IILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
SS ++ LK +L +P L +L+ + LL + + + ++ A + IG I +D
Sbjct: 364 ASSGAKDLVALKASLQRIPPLLSLLESTGTALLGELCKGIDPMDEVAEL---IGRGIVDD 420
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
PFV R + I G LD R + + L K + + +LK+ +
Sbjct: 421 P-----PFVLR--EGGIIADGYHAELDELRAISREGKGFIARLEAKEKARTGITSLKIRY 473
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + ++ G +P +I+ N T EL + A E + E
Sbjct: 474 NKVFGYYIEVTKTNL-GSIPEDYIRRQTLANAERFITPELKEYEEKVLGAE-ERIVELEY 531
Query: 299 CLEALVDAIREDVSV----LTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
+L IR+ V+ L A+ L LD++ S A + Y RP + L
Sbjct: 532 ---SLFQQIRQSVAAEGERLARTADRLATLDVLA-SLADVAHER---NYCRPGIDDGDTL 584
Query: 355 AIDGGRHPILESIH--NDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQI 411
+I GRHP++E+++ F+PN++ + N +VI+TGPNM+GKST+++QV LIV++AQ+
Sbjct: 585 SISEGRHPVVEALNVSERFVPNDVLLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQL 644
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA + I VVDRIFTR+G DNL STFM EM ETA +++N + +SL+V+DE+G
Sbjct: 645 GSFVPATEARIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPKSLVVLDEIG 704
Query: 472 RATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
R TS+ DG +IAW+ E+L A T+FA+H L+ELA +K + V N+
Sbjct: 705 RGTSTFDGVSIAWAVAEYLHDTARCAAKTLFATHYHELTELAVTRGKIKNCNVAVKEWND 764
Query: 529 RLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
++ F ++ + G H YG+ +A +AGLP VIE A+ I + K E
Sbjct: 765 QVIFLRKIVEGGASH--SYGIQVARLAGLPIEVIERAKEILHNLEKGE 810
>gi|206889472|ref|YP_002248548.1| DNA mismatch repair protein MutS [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|238058946|sp|B5YJY3.1|MUTS_THEYD RecName: Full=DNA mismatch repair protein MutS
gi|206741410|gb|ACI20467.1| DNA mismatch repair protein MutS [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 852
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 188/597 (31%), Positives = 303/597 (50%), Gaps = 56/597 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DA++ +NLEI L + G SL +L T T G R L+ L PL +I
Sbjct: 259 MLLDASTKKNLEIFVSLDGSREG------SLIWVLDETLTPMGARFLKNTLSCPLLNISE 312
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D ++ + L L + L+ FP + +R+ K K + K L+
Sbjct: 313 IEKRFDGIEAFCGDYLLREKLEKILKDFP-DIERIALKI--KGKSINPKELNS------- 362
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVIDEDV 179
LK AL +P L +VL++ ++ +L ++Y S+ E NE I E+
Sbjct: 363 --------LKNALKRIPELREVLRN-KTEILNSLYNSLYELNELVTKI---------ENA 404
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
L P V F + G + +D R ++ + + N+ + R++ + +LK+ +N
Sbjct: 405 LTENPPPVITEGGIF--RDGYNSTIDELRALRTESKKYILNMEAEERKKTGINSLKIGYN 462
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ + ++ +PS +I+ N T EL L ++ SA + I +
Sbjct: 463 RVFGYYIEVTKPNLH-LVPSHYIRKQTLANAERFITEELKELELKIMSAEEKLKILEQEL 521
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
LV++I + E + +D ++ S A S Y RP E + I G
Sbjct: 522 FIELVNSILPFTDKILNNGETIGFIDFLL-SLAKVASKY---NYVRPEINEEDIIEIKDG 577
Query: 360 RHPILESI-------HNDFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
RHP++E + FIPN++ I A ++I+TGPNM+GKSTY++Q LIV++AQI
Sbjct: 578 RHPVIERLIQLGKLYEGRFIPNDLLIGPADQRIIILTGPNMAGKSTYMRQNALIVLMAQI 637
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA ++ I +VDRIFTR+G D L STFM EM ETA ++ N + +S I++DE+G
Sbjct: 638 GSFVPAKYAKIGIVDRIFTRIGASDYLAKGQSTFMVEMIETANILNNATPKSFIILDEVG 697
Query: 472 RATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NN 528
R TS+ DG +IAWS E++ +KA T+FA+H L++LA +K +F VV++ +
Sbjct: 698 RGTSTFDGISIAWSVVEYIAEKIKARTLFATHYHELTDLAFNLDCIK--NFTVVVKEWGD 755
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ 585
+ F ++++G YG+ +A +AGLP ++ AR I R+ KKE + I Q
Sbjct: 756 EIIFLRKIQEGGAD-KSYGIQVARLAGLPLEILNRAREILHRLEKKEFQVFPIRARQ 811
>gi|337286407|ref|YP_004625880.1| DNA mismatch repair protein MutS [Thermodesulfatator indicus DSM
15286]
gi|335359235|gb|AEH44916.1| DNA mismatch repair protein MutS [Thermodesulfatator indicus DSM
15286]
Length = 857
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 187/577 (32%), Positives = 282/577 (48%), Gaps = 46/577 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID + RNLEI L + L G+ K SL +L T T G RLL+ LL PL+++E+I
Sbjct: 267 IDEATKRNLEI---LRNNLDGSL--KGSLLWVLDKTLTPMGGRLLKEWLLYPLRNLESIE 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL+ + L+ L + L + + +R+ + V N +
Sbjct: 322 ARLEAVAYLVDEPSKRKNLRELLARI-ADVERLTGRAA----------MGVANPR----- 365
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSV-CENEKYASIRKRIGEVIDEDVLH 181
++ LK +L +P L ++L + S LL I ++ + ++ K I E
Sbjct: 366 --DLLALKDSLKMVPQLKELLPEKISPLLDAIKENLLVPGDLVQNLEKTIRE-------E 416
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
A V F ++ IK G+ LD RR D + L + R +PNLK+ +N
Sbjct: 417 APVNF----KEGGVIKDGVHEELDELRRLKDDALSFLAELETRERARTGIPNLKVGYNRV 472
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY-IRTEICL 300
G+Y+ + + K+P +I+ T EL + SA + E+ L
Sbjct: 473 FGYYIEVSKSHLS-KVPDNYIRKQTLVGGERFITPELKEFEAKVLSADERIKELEQELFL 531
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E + + E L LA L LD++ S A T + Y RP E + I GR
Sbjct: 532 E-IRKNVAEKAQELKKLARALATLDVLA-SLAEVAVT---NNYIRPKIIEEPGIQIREGR 586
Query: 361 HPILESI--HNDFIPNNIFISEAANMVIV-TGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E F+PN++ + N+V+V TGPNM+GKST L+Q LI +LA +G +VPA
Sbjct: 587 HPVVEKALPSGSFVPNSVKLDLKENVVLVITGPNMAGKSTILRQTALITLLAHVGSFVPA 646
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+TI + DRIF+R+G D L STFM EM E A ++ + RSL+++DE+GR TS+
Sbjct: 647 EEATIGLCDRIFSRIGASDQLSRGRSTFMVEMSECANILHQATSRSLVILDEIGRGTSTY 706
Query: 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
DG AIAW+ E L K T+FA+H L ELA YP +K + V +++ F ++L
Sbjct: 707 DGLAIAWAVAEFLHEKKIMTLFATHYHELVELAGEYPGIKNFNVAVKTFEDQIIFLYRLL 766
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
GP YG+ +A +AGLP VI A+ I + K
Sbjct: 767 PGPAS-ESYGVQVAALAGLPKEVIARAKDILKSLENK 802
>gi|445416440|ref|ZP_21434512.1| DNA mismatch repair protein MutS [Acinetobacter sp. WC-743]
gi|444762180|gb|ELW86551.1| DNA mismatch repair protein MutS [Acinetobacter sp. WC-743]
Length = 884
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 170/571 (29%), Positives = 294/571 (51%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEII+PL GTS LF ++ +T G+RLL L+QP++D + ++
Sbjct: 277 LDPVTRRNLEIIDPLFE--HGTS-----LFSLINDCQTAMGSRLLARTLMQPIRDTQILD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD D L L+ + + R++ ++V S+V + +A+
Sbjct: 330 ERLDATDTL-------------LKGYHEAPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L +L QS L+ + + + + + +R+ I E
Sbjct: 373 --DLVQLRQACAQIPFLRHALQPILNTQQSKLIGQLNEELGD---FNGLHQRLMSAIVE- 426
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 427 ----HPPVLLRDGNVIA--EGFDTELDELRKIRDHAGQFLIDLEIKERETTGINTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P +I+ N T EL S + S+ R ++
Sbjct: 481 NRVSGYYIELTRAQAE-QAPEHYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKL 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E L+D +R D++ L +++ + +D++ N FAH ++ + RP ++ + + I
Sbjct: 540 LFEMLLDELRADIANLQMMSASIAHIDLLAN-FAHQAR---LNNWNRPEYSPDIGIKITA 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++ES+ F PN+ + M I+TGPNM GKST+++Q LI +LA G +VPA
Sbjct: 596 GRHPVVESLSKAPFTPNDTQLDFNHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 KAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L +K +FA+H L+EL+ V I +++V + N L
Sbjct: 716 DGLSLAWACVLDLTKRIKCLCLFATHYFELTELSK---EVAIDNYHVTAKELNGNLILLH 772
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++ GP H GL +A++AG+P+ VI+ A+
Sbjct: 773 KVQQGPASQSH-GLQVAKLAGIPAGVIKEAQ 802
>gi|315127431|ref|YP_004069434.1| DNA mismatch repair protein [Pseudoalteromonas sp. SM9913]
gi|315015944|gb|ADT69282.1| DNA mismatch repair protein [Pseudoalteromonas sp. SM9913]
Length = 863
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 175/589 (29%), Positives = 294/589 (49%), Gaps = 59/589 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + +NLE+ L T L +L T T G+RLL+ + P+++ + +N
Sbjct: 274 LDAPTRKNLELTVNLSGGFENT------LAQVLDKTATAMGSRLLKRRIHTPIRNKDELN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAKKS 119
+RL+ + ++ + QL L L++ + +RV+ +P+ +T
Sbjct: 328 SRLNAISAIL-DVQLCSELHDALKEI-GDIERVIARLALHTARPRDLTR----------- 374
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L++AL AL L +L DA +++I E + ++ +R VID
Sbjct: 375 ---------LRSALQALAPLHSLLNDATDARISHIIAHSKELPELQALLERA--VIDNP- 422
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + R A G + LD R ++ + L + RE + LK+ +N
Sbjct: 423 -----PVLIRDGGVIA--PGYNSELDEWRNLSQGATDVLEQLEQRERERTGISTLKIGYN 475
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + + +P+ +I+ NN EL + + + +
Sbjct: 476 RVHGFFIEVSRANSH-LVPADYIRRQTLKNNERYIIPELKEHEDKVLGSQSKALALEKQL 534
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L + I + L ++A V+ LD ++N+ A T Y +P +N ++I G
Sbjct: 535 YEQLFEFIAPHIEQLQIMASVIADLD-VLNNLAERAQTL---NYAKPELCDNDNISIKQG 590
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + D FI N + ++ M+I+TGPNM GKSTY++Q LIV++A IGCYVPA
Sbjct: 591 RHPVVEQVMKDPFIANPVELNNQRKMLIITGPNMGGKSTYMRQTALIVLMAHIGCYVPAD 650
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR TS+ D
Sbjct: 651 SAKIGNIDRIFTRIGASDDLASGRSTFMVEMTETAAILNNATAQSLVLMDEIGRGTSTYD 710
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++A++ +HL S + A T+FA+H L+ELA P + +H + N+ + F +
Sbjct: 711 GLSLAYATADHLASKIAAKTLFATHYFELTELAEQTPGLVNVHLDAIEHNDTIAFMHTVL 770
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR----------SITSRITKKEV 576
DG +GL +A +AG+P VI A+ S+T+ T+++V
Sbjct: 771 DGAAS-KSFGLQVAALAGVPKAVIAQAKQKLSLLENHQSVTTVTTEQQV 818
>gi|404402499|ref|ZP_10994083.1| DNA mismatch repair protein MutS [Pseudomonas fuscovaginae UPB0736]
Length = 859
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 177/573 (30%), Positives = 280/573 (48%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE L + L G + +L ++ +T G+RLL L +PL+D++ +
Sbjct: 270 LDAASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLKILT 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + CL E E+L L + + +R+L + NA+
Sbjct: 324 ARQTSIGCLLEGYRFERLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + + L + + + A + +R +ID
Sbjct: 367 -----DLARLRDALGALPQLQDAMLELDAPHLKQLATTTSTYPELAILLERA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELLSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + + I G
Sbjct: 531 YEALLEMLIGELPPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVDEPCMRIGQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG YVPA
Sbjct: 587 RHPVVEQVLTTPFVANDLALDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSYVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSPVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAHLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGDVIRRAREHLSRL 798
>gi|121590678|ref|ZP_01678011.1| DNA mismatch repair protein MutS [Vibrio cholerae 2740-80]
gi|121547464|gb|EAX57572.1| DNA mismatch repair protein MutS [Vibrio cholerae 2740-80]
Length = 862
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 177/573 (30%), Positives = 284/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +++ D+ + +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALR----SARPRDLARLRHAMQQ 381
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSF--LLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ + L T L P LA++ AQ L + R++ EN
Sbjct: 382 LPELHSLLTEL-GQPHLAQLRTHAQPMDELCDLLERAIKENP------------------ 422
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 423 ----PVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 476
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 477 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 534
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 535 ----WEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 586
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 587 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 647 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 706
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 707 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 766
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 767 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
>gi|408671884|ref|YP_006871632.1| DNA mismatch repair protein mutS [Emticicia oligotrophica DSM
17448]
gi|387853508|gb|AFK01605.1| DNA mismatch repair protein mutS [Emticicia oligotrophica DSM
17448]
Length = 875
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 178/586 (30%), Positives = 298/586 (50%), Gaps = 54/586 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++RNLE++ H G L +L T T G RLLR L+ PLK+ I
Sbjct: 275 LDKFTIRNLELVFAQHDG--GVP-----LIQVLDQTITPMGARLLRKWLVLPLKERSLIQ 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
RLD ++ + N+++ LS L+ + +R++ + P+++
Sbjct: 328 ERLDTVEFFVKNDEVLEQLSLLLKPI-GDLERLISKVAVRRINPRELGQ----------- 375
Query: 120 QTLISSIILLKTALDALPLLAKVLK-DAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
LK AL + + K L+ ++ F + Y + + KY + +RI + +D
Sbjct: 376 ---------LKKALGQIEPIKKQLEIGSERFPILQKYLNQLTDCKY--LVERIERELRDD 424
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P V Q IK G+D LD + + + + N+ +P+LK+ +
Sbjct: 425 A-----PVV--MNQGNMIKSGVDAELDELHKIAFSGKDFLIEIQNRESARTGIPSLKISY 477
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+YL + + + K+P+ +I+ N T EL + +A + +
Sbjct: 478 NKVFGYYLEVSNAH-KSKVPTEWIRKQTLVNAERYITEELKVYEEKILTAESKIFEIEFR 536
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
LV A E V+ + A V+ +LD + +SFA + Y +P ++N L I
Sbjct: 537 IFNDLVIAANEFVAQIQQNARVISILDAL-SSFAKVAQR---NNYCKPVVSDNKVLNIKE 592
Query: 359 GRHPILES---IHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRH ++E + +IPN++++ + ++I+TGPNM+GKS L+Q LIV++AQ+G +
Sbjct: 593 GRHAVIEQQLPLGEAYIPNDLYLDDQTQQIIIITGPNMAGKSALLRQTALIVLMAQVGSF 652
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + +VD+IFTR+G DNL STFM EM ETA ++ N+S+RSLI+MDE+GR T
Sbjct: 653 VPAQSAELGIVDKIFTRVGASDNLSRGESTFMVEMTETASILNNLSDRSLIIMDEIGRGT 712
Query: 475 SSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAWS E+L K +T+FA+H L++LA + +K + V NN++
Sbjct: 713 STYDGVSIAWSIAEYLHNHQKYKPWTLFATHYHELNQLAEDFGRIKNFNVSVKEVNNKVV 772
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
F +LK+G +G+ +A++AG+P V+ A I + K +K
Sbjct: 773 FLRKLKEGGSE-HSFGIHVAQIAGMPQAVVLRANEILQHLEKDHIK 817
>gi|417823663|ref|ZP_12470255.1| DNA mismatch repair protein MutS [Vibrio cholerae HE48]
gi|419831865|ref|ZP_14355332.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-61A2]
gi|423816209|ref|ZP_17715195.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-55C2]
gi|423848272|ref|ZP_17718981.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-59A1]
gi|423878851|ref|ZP_17722589.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-60A1]
gi|423996671|ref|ZP_17739937.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-02C1]
gi|424015372|ref|ZP_17755222.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-55B2]
gi|424018483|ref|ZP_17758285.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-59B1]
gi|424623853|ref|ZP_18062333.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-50A1]
gi|424628429|ref|ZP_18066738.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-51A1]
gi|424632388|ref|ZP_18070507.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-52A1]
gi|424639387|ref|ZP_18077286.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-56A1]
gi|424647547|ref|ZP_18085227.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-57A1]
gi|443526406|ref|ZP_21092489.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-78A1]
gi|340048292|gb|EGR09214.1| DNA mismatch repair protein MutS [Vibrio cholerae HE48]
gi|408016138|gb|EKG53694.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-50A1]
gi|408021226|gb|EKG58491.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-52A1]
gi|408027094|gb|EKG64077.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-56A1]
gi|408037022|gb|EKG73430.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-57A1]
gi|408058930|gb|EKG93706.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-51A1]
gi|408636880|gb|EKL09002.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-55C2]
gi|408644145|gb|EKL15851.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-60A1]
gi|408645257|gb|EKL16918.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-59A1]
gi|408652272|gb|EKL23497.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-61A2]
gi|408854576|gb|EKL94329.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-02C1]
gi|408862037|gb|EKM01589.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-55B2]
gi|408870029|gb|EKM09311.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-59B1]
gi|443455255|gb|ELT19039.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-78A1]
Length = 862
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 283/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L+ + R+ E + E+ D E +
Sbjct: 370 -RDLARLRHAMQQLPELHSVMSELKQPHLSEL-RTHAEP---------MDELCDLLERAI 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 419 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 476
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 477 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 534
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 535 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 586
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 587 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 647 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 706
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 707 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 766
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 767 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
>gi|121728557|ref|ZP_01681579.1| DNA mismatch repair protein MutS [Vibrio cholerae V52]
gi|121629169|gb|EAX61610.1| DNA mismatch repair protein MutS [Vibrio cholerae V52]
Length = 886
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 298 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 351
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 352 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 393
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 394 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 442
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 443 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 500
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 501 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 558
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 559 ----WEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 610
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 611 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 670
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 671 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 730
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 731 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 790
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 791 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 822
>gi|452819654|gb|EME26709.1| mutS family DNA mismatch repair protein MSH4 isoform 1 [Galdieria
sulphuraria]
Length = 1270
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 189/659 (28%), Positives = 330/659 (50%), Gaps = 56/659 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRS-LFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+D ++++LEI+ ++ + G N + S + L KT GTR LR +LL+P D TI
Sbjct: 203 MDYETLQSLEIV-SCNAKVCGIPNPQHSTVLRNLNFCKTRIGTRYLRKSLLEPPCDYATI 261
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS-- 119
TR + L EL NE LFF + L +FP + + +L K+ DVD K+
Sbjct: 262 TTRQEALKELTQNESLFFQIQTSLVQFP-DLEGILSQIIQVQKRD-----DVDRRKRPGL 315
Query: 120 -----QT----LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKR 170
QT LI + +LL AL + + + +S L+A+I S+ N +++
Sbjct: 316 LESEIQTVDIKLIRNFLLLTKALGQVHAILDAVCRGRSPLIASISTSL-RNPSLSNMFNL 374
Query: 171 IGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELK 230
+ +VID + R R + +A++ G + LLD++R+ +T + +H+ +
Sbjct: 375 VTQVIDSESPSNRTGDKIRLEGAYAVRSGRNELLDLSRKILSETIDQIHHYFQSLQNIPG 434
Query: 231 LPNLKLPFNNRQGFYLSIPHKDIQGKLP---STFIQVVKHGNNIHCSTLELASLNVRNKS 287
L ++ +G+++ + I +LP +++ ++ N +T L LN+R +
Sbjct: 435 FERASLAYSQSRGYHIKL----ISSQLPDIEEELLRLAQNANIFRFTTRTLNGLNIRCRE 490
Query: 288 AAGECYIRTEICLEALVDAI--REDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTR 345
+ T L+ L++ I E++ L L + + +LD + SFA +S +R
Sbjct: 491 TLNDIIRITNQELQMLLNEIWNAENMVSLHCLCDAIGILDCLA-SFASYVSKS--ERLVL 547
Query: 346 PHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405
P + GP+AI GRHP+LE +++P++ F+S A++ +++G NMSGK+T+++ V I
Sbjct: 548 PKISTKGPIAIKNGRHPLLEKQIKNYVPHDTFLSAASSFYLISGSNMSGKTTFMKAVASI 607
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERS-- 463
+LA GC+VPA F+++ +++RI R T D+ E N S+F EM+ETA V+ + E
Sbjct: 608 CVLAHAGCFVPADFASVCLINRIIVRTTTNDSAEENCSSFSKEMRETASVLCCLEEMEAK 667
Query: 464 -------------LIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSEL 509
L+V DEL RATS +GF+IA++ E L+ S AY +F++H + +S
Sbjct: 668 YQLREARQNKPIILVVFDELARATSPMEGFSIAFAVAEQLVASPVAYCLFSTHFQEMSLF 727
Query: 510 ATIYPNVKILHFYVVIRNNRLDFKFQ-----LKDGPRHVPHYGLLLAEVAGLPSTVIETA 564
+Y K + + D L G +YG+ A+ AG PS VI A
Sbjct: 728 EDLYACAKSFYLTSSFTKDDSDNSGSQNAHVLTRGFIKEKNYGIATAKEAGFPSNVISLA 787
Query: 565 RSITSRITKKEVKR--MEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKE 621
+ T +++ R + + Q +Q + + Q+LI LK + ++E +R L ++ E
Sbjct: 788 EQLVDNFT-QQISRCLTKDSSAQEEQCKKEFSLLQKLIVLKNAGLEKERLRQKLAHIWE 845
>gi|397686220|ref|YP_006523539.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri DSM 10701]
gi|50250471|emb|CAH03856.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri]
gi|395807776|gb|AFN77181.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri DSM 10701]
Length = 859
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 178/573 (31%), Positives = 282/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE L L G + +L ++ +T G+RLL L +PL+D + +
Sbjct: 270 LDGATRRNLE----LDINLGG--GRDNTLQSVVDRCQTAMGSRLLSRWLNRPLRDRQVLE 323
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQ+ L + +R+L + NA+
Sbjct: 324 ARQDSITCLLEHYRFEQIQPQLKDI-----GDLERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L +++ + L + S+ + A + + +ID
Sbjct: 367 -----DLARLRDALAALPQLQAGMQELVAPHLIELAASIRTYPELADLLAKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQYLMDLETREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R +
Sbjct: 472 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKQL 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ RP F E L I+ G
Sbjct: 531 YEELLELLIGHLAPLQESAAALAELDVLSNLAERALTLD----LNRPRFVEQPCLRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDETRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ D
Sbjct: 647 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ EHL L+A+T+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAEHLAKLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 798
>gi|403053791|ref|ZP_10908275.1| DNA mismatch repair protein MutS [Acinetobacter bereziniae LMG
1003]
Length = 645
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 170/571 (29%), Positives = 294/571 (51%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEII+PL GTS LF ++ +T G+RLL L+QP++D + ++
Sbjct: 38 LDPVTRRNLEIIDPLFE--HGTS-----LFSLINDCQTAMGSRLLARTLMQPIRDTQILD 90
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD D L L+ + + R++ ++V S+V + +A+
Sbjct: 91 ERLDATDTL-------------LKGYHEAPVRLVLKEIGDIERVLSRVA-LGSARPR--- 133
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L +L QS L+ + + + + + +R+ I E+
Sbjct: 134 --DLVQLRQACAQIPFLRHALQPILNTQQSKLIGQLNEELGD---FNGLHQRLMSAIVEN 188
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 189 P-----PVLLRDGNVIA--EGFDTELDELRKIRDHAGQFLIDLEIKERETTGINTLKIGY 241
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P +I+ N T EL S + S+ R ++
Sbjct: 242 NRVSGYYIELTRAQAE-QAPEHYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKL 300
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E L+D +R D++ L +++ + +D++ N FAH ++ + RP ++ + I
Sbjct: 301 LFEMLLDELRADIANLQMMSASIAHIDLLAN-FAHQAR---LNNWNRPEYSPEIGIKITA 356
Query: 359 GRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++ES+ F PN+ + M I+TGPNM GKST+++Q LI +LA G +VPA
Sbjct: 357 GRHPVVESLSKTPFTPNDTQLDFNHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPA 416
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 417 KAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 476
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKF 534
DG ++AW+C L +K +FA+H L+EL+ V I +++V + N L
Sbjct: 477 DGLSLAWACVLDLTKRIKCLCLFATHYFELTELSK---EVAIDNYHVTAKELNGNLILLH 533
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++ GP H GL +A++AG+P+ VI+ A+
Sbjct: 534 KVQQGPASQSH-GLQVAKLAGIPAGVIKEAQ 563
>gi|452819655|gb|EME26710.1| mutS family DNA mismatch repair protein MSH4 isoform 2 [Galdieria
sulphuraria]
Length = 1206
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 189/659 (28%), Positives = 330/659 (50%), Gaps = 56/659 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRS-LFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+D ++++LEI+ ++ + G N + S + L KT GTR LR +LL+P D TI
Sbjct: 203 MDYETLQSLEIV-SCNAKVCGIPNPQHSTVLRNLNFCKTRIGTRYLRKSLLEPPCDYATI 261
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS-- 119
TR + L EL NE LFF + L +FP + + +L K+ DVD K+
Sbjct: 262 TTRQEALKELTQNESLFFQIQTSLVQFP-DLEGILSQIIQVQKRD-----DVDRRKRPGL 315
Query: 120 -----QT----LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKR 170
QT LI + +LL AL + + + +S L+A+I S+ N +++
Sbjct: 316 LESEIQTVDIKLIRNFLLLTKALGQVHAILDAVCRGRSPLIASISTSL-RNPSLSNMFNL 374
Query: 171 IGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELK 230
+ +VID + R R + +A++ G + LLD++R+ +T + +H+ +
Sbjct: 375 VTQVIDSESPSNRTGDKIRLEGAYAVRSGRNELLDLSRKILSETIDQIHHYFQSLQNIPG 434
Query: 231 LPNLKLPFNNRQGFYLSIPHKDIQGKLPS---TFIQVVKHGNNIHCSTLELASLNVRNKS 287
L ++ +G+++ + I +LP +++ ++ N +T L LN+R +
Sbjct: 435 FERASLAYSQSRGYHIKL----ISSQLPDIEEELLRLAQNANIFRFTTRTLNGLNIRCRE 490
Query: 288 AAGECYIRTEICLEALVDAI--REDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTR 345
+ T L+ L++ I E++ L L + + +LD + SFA +S +R
Sbjct: 491 TLNDIIRITNQELQMLLNEIWNAENMVSLHCLCDAIGILDCLA-SFASYVSKS--ERLVL 547
Query: 346 PHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405
P + GP+AI GRHP+LE +++P++ F+S A++ +++G NMSGK+T+++ V I
Sbjct: 548 PKISTKGPIAIKNGRHPLLEKQIKNYVPHDTFLSAASSFYLISGSNMSGKTTFMKAVASI 607
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERS-- 463
+LA GC+VPA F+++ +++RI R T D+ E N S+F EM+ETA V+ + E
Sbjct: 608 CVLAHAGCFVPADFASVCLINRIIVRTTTNDSAEENCSSFSKEMRETASVLCCLEEMEAK 667
Query: 464 -------------LIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSEL 509
L+V DEL RATS +GF+IA++ E L+ S AY +F++H + +S
Sbjct: 668 YQLREARQNKPIILVVFDELARATSPMEGFSIAFAVAEQLVASPVAYCLFSTHFQEMSLF 727
Query: 510 ATIYPNVKILHFYVVIRNNRLDFKFQ-----LKDGPRHVPHYGLLLAEVAGLPSTVIETA 564
+Y K + + D L G +YG+ A+ AG PS VI A
Sbjct: 728 EDLYACAKSFYLTSSFTKDDSDNSGSQNAHVLTRGFIKEKNYGIATAKEAGFPSNVISLA 787
Query: 565 RSITSRITKKEVKR--MEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKE 621
+ T +++ R + + Q +Q + + Q+LI LK + ++E +R L ++ E
Sbjct: 788 EQLVDNFT-QQISRCLTKDSSAQEEQCKKEFSLLQKLIVLKNAGLEKERLRQKLAHIWE 845
>gi|198413599|ref|XP_002122852.1| PREDICTED: similar to predicted protein, partial [Ciona
intestinalis]
Length = 377
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 199/328 (60%), Gaps = 13/328 (3%)
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L+ +R + L L+E++ LDM++ SFAH + V RP FT+ LA+ GRHP
Sbjct: 5 LLSEVRTCIGCLYNLSEIVSTLDMLM-SFAHV---RTVTDCVRPEFTDT--LAVKSGRHP 58
Query: 363 ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTI 422
+L+ + +PNNI+ ++ N ++TGPNMSGKSTYL+ + L+ ++AQIGC+VPA F++
Sbjct: 59 VLDRVLPSLVPNNIYAADGTNFSVITGPNMSGKSTYLKMIALLQVMAQIGCFVPADFASF 118
Query: 423 RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAI 482
R+ D+IF+R+G+ D++E+NSSTF+ EMKE +++QN SLI++DELGR TS+ +G +
Sbjct: 119 RISDQIFSRIGSDDDMETNSSTFVLEMKEINYILQNCEGNSLILIDELGRGTSTEEGIGL 178
Query: 483 AWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHF---YVVIRNNRL---DFKFQL 536
W+ E LL K++T FA+H L L TIYPNV+ H ++V L + + L
Sbjct: 179 CWAISEFLLVQKSFTFFATHFLELCRLETIYPNVENYHMQIQHIVSAKGSLRKVSYTYVL 238
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAA 596
G HYGL LAE+ PS+V+ AR I + + + + + K+ Y A
Sbjct: 239 SKGHTEEKHYGLQLAELFNFPSSVMSQAREIAASMQETSDTADIVTTAERKKDNADYRFA 298
Query: 597 QRLICLKYSNQ-DEESIRHALQNLKESF 623
+L+ + S++ E+++ L+ L+E +
Sbjct: 299 TKLLQVSRSSKLSSEALKEYLKRLREEY 326
>gi|419829085|ref|ZP_14352574.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-1A2]
gi|422916251|ref|ZP_16950592.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-02A1]
gi|341640771|gb|EGS65350.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-02A1]
gi|408622274|gb|EKK95262.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-1A2]
Length = 861
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 283/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 273 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 326
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 327 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 368
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L+ + R+ E + E+ D E +
Sbjct: 369 -RDLARLRHAMQQLPELHSVMSELKQPHLSEL-RTHAEP---------MDELCDLLERAI 417
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 418 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 475
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 476 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 533
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 534 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 585
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 586 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 645
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 646 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 705
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 706 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 765
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 766 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 797
>gi|424658411|ref|ZP_18095668.1| DNA mismatch repair protein MutS [Vibrio cholerae HE-16]
gi|408055133|gb|EKG90076.1| DNA mismatch repair protein MutS [Vibrio cholerae HE-16]
Length = 862
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 370 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 419 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 476
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 477 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 534
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 535 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 586
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 587 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 647 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 706
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 707 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDSIAFM 766
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 767 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
>gi|359436882|ref|ZP_09226961.1| DNA mismatch repair protein MutS [Pseudoalteromonas sp. BSi20311]
gi|358028479|dbj|GAA63210.1| DNA mismatch repair protein MutS [Pseudoalteromonas sp. BSi20311]
Length = 863
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 175/589 (29%), Positives = 294/589 (49%), Gaps = 59/589 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + +NLE+ L T L +L T T G+RLL+ + P+++ + +N
Sbjct: 274 LDAPTRKNLELTVNLSGGFENT------LAQVLDKTATAMGSRLLKRRIHTPIRNKDELN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAKKS 119
+RL+ + ++ + QL L L++ + +RV+ +P+ +T
Sbjct: 328 SRLNAISAIL-DVQLCSELHDALKEI-GDIERVIARLALHTARPRDLTR----------- 374
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L++AL AL L +L DA +++I E + ++ +R VID
Sbjct: 375 ---------LRSALQALAPLHSLLNDATDARISHIIAHSKELPELQALLERA--VIDNP- 422
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + R A G + LD R ++ + L + RE + LK+ +N
Sbjct: 423 -----PVLIRDGGVIA--PGYNSELDEWRNLSQGATDVLEQLEQRERERTGISTLKIGYN 475
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + + +P+ +I+ NN EL + + + +
Sbjct: 476 RVHGFFIEVSRANSH-LVPADYIRRQTLKNNERYIIPELKEHEDKVLGSQSKALALEKQL 534
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L + I + L ++A V+ LD ++N+ A T Y +P +N ++I G
Sbjct: 535 YEQLFEFIAPHIEQLQIMASVIADLD-VLNNLAERAQTL---NYAKPELCDNDNISIKQG 590
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + D FI N + ++ M+I+TGPNM GKSTY++Q LIV++A IGCYVPA
Sbjct: 591 RHPVVEQVMKDPFIANPVELNNQRKMLIITGPNMGGKSTYMRQTALIVLMAHIGCYVPAD 650
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR TS+ D
Sbjct: 651 SAKIGNIDRIFTRIGASDDLASGRSTFMVEMTETAAILNNATAQSLVLMDEIGRGTSTYD 710
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++A++ +HL S + A T+FA+H L+ELA P + +H + N+ + F +
Sbjct: 711 GLSLAYATADHLASKIAAKTLFATHYFELTELAEQTPGLVNVHLDAIEHNDTIAFMHTVL 770
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR----------SITSRITKKEV 576
DG +GL +A +AG+P VI A+ S+T+ T+++V
Sbjct: 771 DGAAS-KSFGLQVAALAGVPKAVIAQAKQKLSLLENHQSVTTVTTEQQV 818
>gi|422586986|ref|ZP_16661657.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330872694|gb|EGH06843.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 859
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 172/590 (29%), Positives = 288/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLSILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R
Sbjct: 367 -----DLARLRDALSALPELQQAMNDLDAPHLQQLAQTASTYPELADLLQR--------A 413
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
++ P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 414 INDNPPAVIR--DGGVLKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVNNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVITRA--------KEHLQRLETTSLPHEQ 807
>gi|315924593|ref|ZP_07920812.1| DNA mismatch repair protein MutS [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315622123|gb|EFV02085.1| DNA mismatch repair protein MutS [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 882
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 181/591 (30%), Positives = 293/591 (49%), Gaps = 65/591 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++ RNLE+ E L +K+ SL +L T T G RLLR + PL + E
Sbjct: 269 MLLDLSTRRNLELTETLRHG-----DKRGSLLWVLDQTATAMGGRLLRQWVEAPLINREK 323
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAK 117
I R + + EL +N L L K + +R+ F PK + S
Sbjct: 324 IEIRQNLVAELAANPGALPELKTLLTKI-YDLERICGKISFGTVNPKDMLS--------- 373
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
LK +L LP L + + L + Y E + I K I I +
Sbjct: 374 -----------LKQSLAMLPQLKAWINSVAAPDLQSRY---GEADDLQDIFKLIDAGIAD 419
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D PFV R IK G + +D R + + + +L + RE+ + +LK+
Sbjct: 420 DA-----PFVLRDGGV--IKTGYNAEIDRYREAHTKGKDWIRDLESAEREKTGIKSLKVK 472
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N G+++ + ++ +P +I+ N T EL S+ + G +
Sbjct: 473 YNKVFGYFIEVTKANLS-LVPEDYIRKQTLSNVERFYTPELKSMETQ---ILGSEERLAQ 528
Query: 298 ICLEALVDAIREDVSVLT----LLAEVLCLLDMIVNSFAHTISTKPVDR-YTRPHFTENG 352
+ + D IRE + T A+ + LD + ++++ V+R Y RP E+G
Sbjct: 529 LEYQLFTD-IRETIMAQTRRIQQRAQDVAQLDAL-----YSLAAVGVERHYVRPEIAEDG 582
Query: 353 PLAIDGGRHPILESIH--NDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILA 409
+A GRHP+ E+I F+ NN + E N M+++TGPNM+GKSTY++QV ++ ++A
Sbjct: 583 VIAFQNGRHPVAEAIMETGTFVANNCALDEGENRMMLITGPNMAGKSTYIRQVAILTLMA 642
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
QIG +VPA + I VVDRIFTR+G D+L + STFM EM E + +++N + SL+++DE
Sbjct: 643 QIGSFVPADSAHIGVVDRIFTRIGASDDLTTGQSTFMVEMSEVSNILKNATRHSLVILDE 702
Query: 470 LGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
+GR TS+ DG +IAW+ E+L L++ A T+FA+H L+EL + P +K +F + ++
Sbjct: 703 IGRGTSTFDGISIAWAVVEYLSNPLTIGAKTLFATHYHELTELEGVKPGIK--NFSIALK 760
Query: 527 NNRLDFKF--QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ F ++K G YG+ +A++AG P V A+ I + + K E
Sbjct: 761 ETKDGVVFLRKIKRGAAD-QSYGIEVAQLAGFPKIVTARAKDILAELNKGE 810
>gi|213969151|ref|ZP_03397290.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato
T1]
gi|301383954|ref|ZP_07232372.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato
Max13]
gi|302064160|ref|ZP_07255701.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato
K40]
gi|302134754|ref|ZP_07260744.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213926149|gb|EEB59705.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato
T1]
Length = 859
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 172/590 (29%), Positives = 288/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLSILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLDAPHLQQLAQTASTYPELADLLQR--------A 413
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
++ P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 414 INDNPPAVIR--DGGVLKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVNNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVITRA--------KEHLQRLETTSLPHEQ 807
>gi|410723797|ref|ZP_11363019.1| DNA mismatch repair protein MutS [Clostridium sp. Maddingley
MBC34-26]
gi|410602799|gb|EKQ57256.1| DNA mismatch repair protein MutS [Clostridium sp. Maddingley
MBC34-26]
Length = 923
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 178/575 (30%), Positives = 297/575 (51%), Gaps = 48/575 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S RNLE+ E + +KK SL +L + T G R +R + +PL
Sbjct: 259 MTIDGNSRRNLELTESIRE-----KSKKGSLLWVLDKSATSMGGRTIRKWIEEPLIIKSE 313
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++E+ S+ L++ LR K+ + +++ K+ + + NAK
Sbjct: 314 IIKRLNGVNEIFSS----ISLNEDLRNSLKD--------IYDIERIVGKISNKNVNAK-- 359
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ LK +LD +P + +LK+ S LL Y S+ E A IR + I ED
Sbjct: 360 -----DLLSLKASLDKIPAIKGLLKNTNSDLLKEYYESLDE---LADIRNLLELSIKED- 410
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P ++ ++ IK G + +D R+S E + L N+ RE + +LK+ +N
Sbjct: 411 -----PSLS-IKEGNIIKDGYNAEVDELRQSKLHGKEWIAALENREREFTGIKSLKVGYN 464
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I + +++ N T EL + + A E I E
Sbjct: 465 KVFGYYIEISKSNYSSIPEGRYVRKQTLANAERYITEELKVMEDK-ILGAEEKLINLEYT 523
Query: 300 L-EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L + D I +++ L A ++ LD I S I+ + + Y +P E+G + I
Sbjct: 524 LFSEIRDKIENEITRLKKSARIISNLDGI--STLALIALE--NDYVKPEINEDGLIEIAE 579
Query: 359 GRHPILESI--HNDFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +F+ NN ++++ ++++TGPNM+GKSTY++QV LI ++AQIG +V
Sbjct: 580 GRHPVVEKVIGRGEFVSNNTILNQSDKELLLITGPNMAGKSTYMRQVALITLMAQIGSFV 639
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I + D+IFTR+G D+L STFM EM E + +++N + +SL+++DE+GR TS
Sbjct: 640 PAASANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTS 699
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L +L + P VK V + + F
Sbjct: 700 TYDGLSIAWSVIEYITGNENLRCKTLFATHYHELVKLEGVLPGVKNYSVAVKKMKDSVIF 759
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++ +G YG+ +A++AGLP VI A+ I
Sbjct: 760 LRKIVEGGAD-ESYGIEVAKLAGLPEGVINRAKEI 793
>gi|357053013|ref|ZP_09114117.1| DNA mismatch repair protein mutS [Clostridium clostridioforme
2_1_49FAA]
gi|355386438|gb|EHG33478.1| DNA mismatch repair protein mutS [Clostridium clostridioforme
2_1_49FAA]
Length = 889
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 181/615 (29%), Positives = 305/615 (49%), Gaps = 78/615 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ RNLE++E + K+ +L +L TKT G RLLRA + QPL +
Sbjct: 269 MVIDTSTRRNLELVETMRE-----KQKRGTLLWVLDKTKTAMGARLLRACIEQPLIHRDE 323
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + ++EL N + ++L + +R++ +K T+ D
Sbjct: 324 IIRRQNAVEELNMNYISREEICEYLNPI-YDLERLIGRISYK----TANPRD-------- 370
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I +++L+ LP + ++L + S LLA + R E + I + IG+ I E+
Sbjct: 371 -----LIAFRSSLEMLPYIKRILGEFNSELLAELGR---ELDPLQDIFRLIGDAIVEEP- 421
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P R + IK G + D R++ + + L + +E+ + LK+ FN
Sbjct: 422 ----PITVR--EGGIIKDGYNQEADKLRQAKTEGKNWLAELEAREKEKTGIKTLKVKFNK 475
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGE---- 291
G+Y + + + ++P +I+ N +T EL L K + E
Sbjct: 476 VFGYYFEVTNS-FKDQVPDYYIRKQTLTNAERFTTDELKQLEDIIMGAEEKLVSLEYDLF 534
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLA-EVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
C +R +I E IR + ++ +V C L ++ Y +P +
Sbjct: 535 CEVRDKIGAEV----IRIQKTAKSIAGIDVFCSLSVVATR----------RNYVKPSIND 580
Query: 351 NGPLAIDGGRHPILESIHND--FIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVI 407
G + I GRHP++E + D F+ N+ F+ N + ++TGPNM+GKSTY++QV LIV+
Sbjct: 581 KGVIQIKNGRHPVVEQMMRDDMFVANDTFLDNGKNRLSVITGPNMAGKSTYMRQVALIVL 640
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+G +VPA + I + DR+FTR+G D+L S STFM EM E A +++N + SL+V+
Sbjct: 641 MAQLGSFVPAQEADIGICDRVFTRVGASDDLASGQSTFMVEMTEVANILRNATRNSLLVL 700
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAW+ EH+ + L A T+FA+H L+EL VK ++ +
Sbjct: 701 DEIGRGTSTFDGLSIAWAVIEHISNSKLLGAKTLFATHYHELTELEGTIAGVK--NYCIA 758
Query: 525 IRNNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-------K 574
++ D F ++ G YG+ +A++AG+P +VI A+ I ++ K
Sbjct: 759 VKEQGDDIVFLRKIVRGGADK--SYGIQVAKLAGVPDSVIARAKEIAEELSDADITARAK 816
Query: 575 EVKRMEINCLQYKQI 589
E+ + N Q+K +
Sbjct: 817 EIAEISSNITQHKAV 831
>gi|291542654|emb|CBL15764.1| DNA mismatch repair protein MutS [Ruminococcus bromii L2-63]
Length = 859
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 179/593 (30%), Positives = 302/593 (50%), Gaps = 55/593 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M++D + RNLE+ + + T +KK SL +L TKT G RL+R+ L PL +I +
Sbjct: 261 MSLDYNTQRNLELTQTML-----TKDKKGSLLWVLDKTKTAMGKRLMRSWLEHPLLNITS 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN R ++EL+++ L ++ L + +R++ + NA+ +
Sbjct: 316 INNRQSAIEELVNDNMLRMDVTDTLSGIF-DIERLMTRIVYGSA----------NARDLR 364
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+L A+ LP ++ +L D +S L IY+S+ +K I I I E+
Sbjct: 365 SLCG-------AIQNLPQISDLLVDCKSVYLKYIYKSI---DKLEDIHSLIDSAIVEEP- 413
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
PF R + IK G + LD D+ + + + R+ +P LK+ +N
Sbjct: 414 ----PFTVR--EGGMIKRGYNEELDSVTGDMNDSKGILARIEAEQRDITGIPKLKVGYNR 467
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + + + +P T+I+ N T +L + R A + L
Sbjct: 468 VFGYYIEVSNS-YKSMVPETYIRKQTLTNCERYITQDLKDVEGRILGAKDRS-----VAL 521
Query: 301 E-ALVDAIREDVS----VLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D +R+ VS + A+ + LD ++ S A+ + +RY RP + +
Sbjct: 522 EYNLFDDVRKTVSDNLERIQKTAKAIANLD-VITSLANVAAD---NRYIRPDVNLSTAIR 577
Query: 356 IDGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIG 412
I RHP++E++ D F+PN++ + A + V I+TGPNM+GKSTY++Q+ +IV++AQIG
Sbjct: 578 IKDSRHPVVEALLKDAPFVPNDVSLDSANDRVAIITGPNMAGKSTYMRQIAIIVLMAQIG 637
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I +VD IFTR+G D+L S STFM EM E A +++N + +SL+++DE+GR
Sbjct: 638 SFVPASSAEIGIVDSIFTRVGASDDLASGQSTFMVEMSEVANIIKNATSKSLLILDEIGR 697
Query: 473 ATSSSDGFAIAWSC---CEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
TS+ DG +IA + C L A T+FA+H L+ + + VK + V R +
Sbjct: 698 GTSTFDGMSIARAVLEFCADRKKLGAKTLFATHYHELTVMEQLLDGVKNYNIAVKKRGDD 757
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN 582
+ F ++ G YG+ +A++AG+P +VI A+ I + + K+ N
Sbjct: 758 ITFLRRIVPGGAD-DSYGIEVAKLAGIPQSVISRAKEILKDLEHGKYKKENAN 809
>gi|28871201|ref|NP_793820.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato
str. DC3000]
gi|37999569|sp|Q87XW6.1|MUTS_PSESM RecName: Full=DNA mismatch repair protein MutS
gi|28854451|gb|AAO57515.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 855
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 172/590 (29%), Positives = 288/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 266 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLSILQ 319
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 320 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 362
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R
Sbjct: 363 -----DLARLRDALSALPELQQAMTDLDAPHLQQLAQTASTYPELADLLQR--------A 409
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
++ P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 410 INDNPPAVIR--DGGVLKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 468 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 526
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 527 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 582
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 583 RHPVVEQVLSTPFVANDLALDDSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 643 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 702
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 703 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVNNVHLNATEHNERIVFLHRVLP 762
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 763 GPASQ-SYGLAVAQLAGVPGKVITRA--------KEHLQRLETTSLPHEQ 803
>gi|330507603|ref|YP_004384031.1| DNA mismatch repair protein MutS [Methanosaeta concilii GP6]
gi|328928411|gb|AEB68213.1| DNA mismatch repair protein MutS [Methanosaeta concilii GP6]
Length = 877
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 166/585 (28%), Positives = 295/585 (50%), Gaps = 54/585 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +VRNLEI + +++ +L L T+T G R L L PL+ +
Sbjct: 258 MVLDEVTVRNLEITRNIRD-----RSRRGTLLEFLDQTRTAMGARTLARWLQMPLQSEQA 312
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
I RLD ++EL S L L++ L K + +R+L K PK+++
Sbjct: 313 IARRLDGVEELASKSLLHRSLAEEL-KGTSDLERLLSRISCKSASPKELS---------- 361
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKD----AQSFLLANIYRSVCENEKYASIRKRIGE 173
+LK+ L+ LP L ++L D AQS L ++ + + S+ +R
Sbjct: 362 ----------VLKSTLEMLPRLQEILMDDQSSAQSSYLQDLSSRLSPLDDIVSLIER--S 409
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
++++ +H R V I+ G D +D R D + L +E + +
Sbjct: 410 IMEDPPVHVRDGGV--------IREGYDPEIDQLRELLRDGRGWISRLEGSEKERTGIKS 461
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
LK+ FNN G+Y+ + ++ +P +I+ N T EL + R SA
Sbjct: 462 LKIAFNNVFGYYIEVSRANLH-LVPQNYIRKQTLANGERFVTPELKDMESRVLSAQERSV 520
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ + D + V+ A L LD++++ ++ + RP F + G
Sbjct: 521 SLEQELFYKVRDLVASKAGVIQERATALAELDVLIS----LATSAKENNMIRPEFNQEGR 576
Query: 354 LAIDGGRHPILE-SIHNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQI 411
++I RHP+L+ ++ F+PN++ + N ++I+TGPNM+GKST+++Q+ L I+AQ
Sbjct: 577 ISIRSSRHPVLDKAMRGAFVPNDVLLDTDRNRLIILTGPNMAGKSTFMRQIALTAIMAQT 636
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA ++++ +VD++FTR+G D+L + STFM EM E A ++ + + +SL+++DE+G
Sbjct: 637 GSFVPAAYASLSLVDQVFTRVGAYDDLSAGQSTFMVEMTEIAHILTSATRKSLVLLDEVG 696
Query: 472 RATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
R TS+ DG ++AW+ E+L S+K ++FA+H L++L +I V+ ++ + ++ ++
Sbjct: 697 RGTSTFDGLSLAWAISEYLHESIKCKSVFATHYHQLTDLESILSGVR--NYSIAVKEDKG 754
Query: 531 DFKFQLKDGPRHV-PHYGLLLAEVAGLPSTVIETARSITSRITKK 574
F P YG+ +A +AG+P TV + A I I K+
Sbjct: 755 TITFLRTVVPGATDKSYGVHVARLAGVPRTVTKRADQILREIEKE 799
>gi|189183338|ref|YP_001937123.1| DNA mismatch repair protein MutS [Orientia tsutsugamushi str.
Ikeda]
gi|238692235|sp|B3CQY2.1|MUTS_ORITI RecName: Full=DNA mismatch repair protein MutS
gi|189180109|dbj|BAG39889.1| DNA mismatch repair protein MutS [Orientia tsutsugamushi str.
Ikeda]
Length = 889
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 186/578 (32%), Positives = 287/578 (49%), Gaps = 51/578 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M IDA++ +NLE+ L + N K SL ++ T T G RLL L PL ++
Sbjct: 282 MLIDASARKNLELTSTL------SGNLKGSLLSVIDATVTNQGGRLLHKFLSTPLAEVNL 335
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN+RL D N QL L + ++ P + +R L + +K L D
Sbjct: 336 INSRLQITDFFYQNLQLVENLRELVKLVP-DIERALSRI------LIAKALPKD------ 382
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQ-SFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L S I LK AL L KVL++ L IY + +++ + +
Sbjct: 383 -LESIKISLKIALSIKKELNKVLEEENIPKYLEEIYNPLFGDDELYDLLDSALLDDLSN- 440
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ F IK L+ R ++S + L +YR+E + LK+ N
Sbjct: 441 --------SANDGGF-IKSSYSTKLEELRNLIYNSSHFIEQLKLQYRQETCIETLKICHN 491
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQ-----VVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
N G ++ + K+ S F+ TLE LN + +AA E I
Sbjct: 492 NVWGMFIEVSSKNAHKITDSKFVHKQTTTTAVRFTTTELQTLEAKMLNAKTMAAALEQEI 551
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
E+C AI L+ LA+ + L+D+ N FA+ IS + Y RP T +
Sbjct: 552 LAELC-----KAISLKSEKLSHLAKSISLIDVFCN-FAY-ISHEF--NYCRPEITSDLAF 602
Query: 355 AIDGGRHPILESI----HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
I GRH ++E + H FI N+ + + ++TGPNM+GKST+L+Q +IVILAQ
Sbjct: 603 NIVNGRHTVIEKLITKKHESFISNDCNLQNDQRIWLITGPNMAGKSTFLRQNAIIVILAQ 662
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IGCYVPA + I VVD++F+R+G D+L S STFM EM ET+ ++ + RSL+++DE+
Sbjct: 663 IGCYVPAQSAQIGVVDKLFSRIGAADDLASGQSTFMVEMVETSVILAQSTFRSLVILDEI 722
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG +IAWSC E++ S ++ +FA+H L +LA+ ++K + N++
Sbjct: 723 GRGTSTYDGISIAWSCLEYIHSNIRCRCLFATHYHELVDLASKLQSLKNFTVKIHDSNDK 782
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
L F +++ +G + YG+ +AE+AGLP V+ A+ I
Sbjct: 783 LSFLYKIIEGAAN-KSYGIHVAELAGLPRIVLNRAKEI 819
>gi|15640557|ref|NP_230186.1| DNA mismatch repair protein MutS [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|147675773|ref|YP_001216036.1| DNA mismatch repair protein MutS [Vibrio cholerae O395]
gi|153819112|ref|ZP_01971779.1| DNA mismatch repair protein MutS [Vibrio cholerae NCTC 8457]
gi|153823618|ref|ZP_01976285.1| DNA mismatch repair protein MutS [Vibrio cholerae B33]
gi|227080718|ref|YP_002809269.1| DNA mismatch repair protein MutS [Vibrio cholerae M66-2]
gi|227116911|ref|YP_002818807.1| DNA mismatch repair protein MutS [Vibrio cholerae O395]
gi|229507146|ref|ZP_04396652.1| DNA mismatch repair protein MutS [Vibrio cholerae BX 330286]
gi|229508991|ref|ZP_04398479.1| DNA mismatch repair protein MutS [Vibrio cholerae B33]
gi|229519659|ref|ZP_04409102.1| DNA mismatch repair protein MutS [Vibrio cholerae RC9]
gi|298500962|ref|ZP_07010763.1| DNA mismatch repair protein MutS [Vibrio cholerae MAK 757]
gi|417812506|ref|ZP_12459166.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-49A2]
gi|418331511|ref|ZP_12942453.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-06A1]
gi|418347930|ref|ZP_12952666.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-43A1]
gi|418354244|ref|ZP_12956968.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-61A1]
gi|419825013|ref|ZP_14348519.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1033(6)]
gi|421319309|ref|ZP_15769868.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1038(11)]
gi|421323358|ref|ZP_15773887.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1041(14)]
gi|421327762|ref|ZP_15778278.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1042(15)]
gi|421334351|ref|ZP_15784820.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1048(21)]
gi|421338248|ref|ZP_15788686.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-20A2]
gi|421346603|ref|ZP_15796986.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-46A1]
gi|422905664|ref|ZP_16940515.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-70A1]
gi|422912268|ref|ZP_16946795.1| DNA mismatch repair protein MutS [Vibrio cholerae HFU-02]
gi|423152566|ref|ZP_17139765.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-22A1]
gi|423155348|ref|ZP_17142485.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-32A1]
gi|423730021|ref|ZP_17703340.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-17A1]
gi|423747390|ref|ZP_17711417.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-50A2]
gi|423891740|ref|ZP_17725431.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-62A1]
gi|423926517|ref|ZP_17730046.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-77A1]
gi|424026043|ref|ZP_17765660.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-69A1]
gi|424598004|ref|ZP_18037204.1| DNA mismatch repair protein MutS [Vibrio Cholerae CP1044(17)]
gi|424600764|ref|ZP_18039921.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1047(20)]
gi|424605658|ref|ZP_18044624.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1050(23)]
gi|424612297|ref|ZP_18051105.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-41A1]
gi|424616173|ref|ZP_18054865.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-42A1]
gi|424620933|ref|ZP_18059463.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-47A1]
gi|443502572|ref|ZP_21069562.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-64A1]
gi|443506483|ref|ZP_21073276.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-65A1]
gi|443510591|ref|ZP_21077257.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-67A1]
gi|443522832|ref|ZP_21089074.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-72A2]
gi|443530449|ref|ZP_21096465.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-7A1]
gi|443534225|ref|ZP_21100139.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-80A1]
gi|31076851|sp|Q9KUI6.1|MUTS_VIBCH RecName: Full=DNA mismatch repair protein MutS
gi|172047734|sp|A5F9C4.1|MUTS_VIBC3 RecName: Full=DNA mismatch repair protein MutS
gi|254766646|sp|C3LS25.1|MUTS_VIBCM RecName: Full=DNA mismatch repair protein MutS
gi|9654962|gb|AAF93703.1| DNA mismatch repair protein MutS [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|126510344|gb|EAZ72938.1| DNA mismatch repair protein MutS [Vibrio cholerae NCTC 8457]
gi|126518867|gb|EAZ76090.1| DNA mismatch repair protein MutS [Vibrio cholerae B33]
gi|146317656|gb|ABQ22195.1| DNA mismatch repair protein MutS [Vibrio cholerae O395]
gi|227008606|gb|ACP04818.1| DNA mismatch repair protein MutS [Vibrio cholerae M66-2]
gi|227012361|gb|ACP08571.1| DNA mismatch repair protein MutS [Vibrio cholerae O395]
gi|229344348|gb|EEO09323.1| DNA mismatch repair protein MutS [Vibrio cholerae RC9]
gi|229353916|gb|EEO18850.1| DNA mismatch repair protein MutS [Vibrio cholerae B33]
gi|229355891|gb|EEO20811.1| DNA mismatch repair protein MutS [Vibrio cholerae BX 330286]
gi|297540210|gb|EFH76270.1| DNA mismatch repair protein MutS [Vibrio cholerae MAK 757]
gi|340043886|gb|EGR04843.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-49A2]
gi|341625450|gb|EGS50903.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-70A1]
gi|341641048|gb|EGS65620.1| DNA mismatch repair protein MutS [Vibrio cholerae HFU-02]
gi|356420538|gb|EHH74057.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-06A1]
gi|356434732|gb|EHH87906.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-22A1]
gi|356443166|gb|EHH95995.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-32A1]
gi|356448041|gb|EHI00826.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-43A1]
gi|356454020|gb|EHI06675.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-61A1]
gi|395923203|gb|EJH34015.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1041(14)]
gi|395925634|gb|EJH36431.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1038(11)]
gi|395931496|gb|EJH42241.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1042(15)]
gi|395937460|gb|EJH48174.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1048(21)]
gi|395945368|gb|EJH56034.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-20A2]
gi|395946751|gb|EJH57411.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-46A1]
gi|395966664|gb|EJH76779.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-42A1]
gi|395975556|gb|EJH85045.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-47A1]
gi|395978984|gb|EJH88348.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1047(20)]
gi|408016638|gb|EKG54172.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-41A1]
gi|408044877|gb|EKG80763.1| DNA mismatch repair protein MutS [Vibrio Cholerae CP1044(17)]
gi|408046771|gb|EKG82440.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1050(23)]
gi|408611284|gb|EKK84645.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1033(6)]
gi|408627397|gb|EKL00209.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-17A1]
gi|408641983|gb|EKL13746.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-50A2]
gi|408658586|gb|EKL29652.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-77A1]
gi|408659593|gb|EKL30632.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-62A1]
gi|408881364|gb|EKM20260.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-69A1]
gi|443432963|gb|ELS75483.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-64A1]
gi|443436899|gb|ELS83013.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-65A1]
gi|443440462|gb|ELS90149.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-67A1]
gi|443451168|gb|ELT11430.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-72A2]
gi|443458650|gb|ELT26045.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-7A1]
gi|443462532|gb|ELT33569.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-80A1]
Length = 862
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 370 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 419 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 476
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 477 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 534
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 535 ----WEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 586
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 587 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 647 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 706
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 707 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 766
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 767 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
>gi|189083217|sp|B0KSD2.2|MUTS_PSEPG RecName: Full=DNA mismatch repair protein MutS
Length = 861
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 175/587 (29%), Positives = 290/587 (49%), Gaps = 50/587 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D++ +
Sbjct: 270 LDGASRRNLELDINL------AGGRDNTLQSVIDRCQTAMASRLLSRWLNRPLRDLKVLQ 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + + F L L++ + +R+L + NA+
Sbjct: 324 ARQDSIRCLLDSYR-FEKLQPQLKEI-GDIERILARIGLR------------NARPR--- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + AS+ +R +ID
Sbjct: 367 --DLARLRDALGALPELQNAMTELEAPHLARLAAITGTYPELASLLERA--IIDNP---- 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 419 --PAVIRDGGV--LKAGYDNELDDLLAISENAGQFLIDLEAREKARTGLANLKVGYNRVH 474
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P +I+ T EL + + SA R ++ +A
Sbjct: 475 GYFIELPTKQAE-QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDA 533
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ P F + L I GRHP
Sbjct: 534 LLETLISHLAPLQDSAAALAELDVLSNLAERALNLD----LNCPRFVDEPCLRIVQGRHP 589
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 590 VVEQVLTTPFVANDLGLDNSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 649
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 650 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 709
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 710 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 769
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
YGL +A++AG+P+ VI+ AR + + R+E L ++Q
Sbjct: 770 SQ-SYGLAVAQLAGVPTVVIQRAR--------EHLGRLETTSLPHEQ 807
>gi|421350371|ref|ZP_15800737.1| DNA mismatch repair protein MutS [Vibrio cholerae HE-25]
gi|395954493|gb|EJH65103.1| DNA mismatch repair protein MutS [Vibrio cholerae HE-25]
Length = 861
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 273 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 326
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 327 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 368
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 369 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MNELCDLLERAI 417
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 418 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 475
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 476 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 533
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 534 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 585
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 586 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 645
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 646 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 705
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 706 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDSIAFM 765
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 766 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 797
>gi|167032192|ref|YP_001667423.1| DNA mismatch repair protein MutS [Pseudomonas putida GB-1]
gi|166858680|gb|ABY97087.1| DNA mismatch repair protein MutS [Pseudomonas putida GB-1]
Length = 880
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 175/587 (29%), Positives = 290/587 (49%), Gaps = 50/587 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T +RLL L +PL+D++ +
Sbjct: 289 LDGASRRNLELDINL------AGGRDNTLQSVIDRCQTAMASRLLSRWLNRPLRDLKVLQ 342
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + + F L L++ + +R+L + NA+
Sbjct: 343 ARQDSIRCLLDSYR-FEKLQPQLKEI-GDIERILARIGLR------------NARPR--- 385
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + AS+ +R +ID
Sbjct: 386 --DLARLRDALGALPELQNAMTELEAPHLARLAAITGTYPELASLLERA--IIDNP---- 437
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 438 --PAVIRDGGV--LKAGYDNELDDLLAISENAGQFLIDLEAREKARTGLANLKVGYNRVH 493
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P +I+ T EL + + SA R ++ +A
Sbjct: 494 GYFIELPTKQAE-QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDA 552
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ P F + L I GRHP
Sbjct: 553 LLETLISHLAPLQDSAAALAELDVLSNLAERALNLD----LNCPRFVDEPCLRIVQGRHP 608
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 609 VVEQVLTTPFVANDLGLDNSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 668
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++RSL++MDE+GR TS+ DG +
Sbjct: 669 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLS 728
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 729 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 788
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
YGL +A++AG+P+ VI+ AR + + R+E L ++Q
Sbjct: 789 SQ-SYGLAVAQLAGVPTVVIQRAR--------EHLGRLETTSLPHEQ 826
>gi|229606175|ref|YP_002876823.1| DNA mismatch repair protein MutS [Vibrio cholerae MJ-1236]
gi|254850775|ref|ZP_05240125.1| DNA mismatch repair protein MutS [Vibrio cholerae MO10]
gi|360037160|ref|YP_004938923.1| DNA mismatch repair protein MutS [Vibrio cholerae O1 str.
2010EL-1786]
gi|229368830|gb|ACQ59253.1| DNA mismatch repair protein MutS [Vibrio cholerae MJ-1236]
gi|254846480|gb|EET24894.1| DNA mismatch repair protein MutS [Vibrio cholerae MO10]
gi|356648314|gb|AET28369.1| DNA mismatch repair protein MutS [Vibrio cholerae O1 str.
2010EL-1786]
Length = 879
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 291 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 344
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 345 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 386
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 387 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 435
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 436 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 493
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 494 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 551
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 552 ----WEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 603
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 604 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 663
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 664 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 723
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 724 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 783
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 784 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 815
>gi|270295058|ref|ZP_06201259.1| DNA mismatch repair protein MutS [Bacteroides sp. D20]
gi|270274305|gb|EFA20166.1| DNA mismatch repair protein MutS [Bacteroides sp. D20]
Length = 871
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 180/581 (30%), Positives = 297/581 (51%), Gaps = 58/581 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +VR+LE++ ++ G S SL +++ T + G RLL+ L+ PLKD++ IN
Sbjct: 267 LDKFTVRSLELMGSMND---GGS----SLLNVIDKTISPMGARLLKRWLVFPLKDVQPIN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL+ + + FF F KE H +++ SKV +
Sbjct: 320 ERLNVV-------EYFFRQPDF-----KELIEEQLHLIGDLERIISKV------AVGRVS 361
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDEDVL 180
++ LK AL A+ + DA + L +I ++C+ SIR RI ID D
Sbjct: 362 PREVVALKVALQAIEPIKAACMDADNASLNHIGEQLNICQ-----SIRDRIDREIDNDP- 415
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK G+ LD RR + + + + E ++P+LK+ +NN
Sbjct: 416 ----PLL--INKGGVIKSGVSAELDELRRIAYSGKDYLLQIQQRESELTEIPSLKIGYNN 469
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+Y+ + HKD K+P+ +I+ N T EL + A + +
Sbjct: 470 VFGYYIEVRNTHKD---KVPAEWIRKQTLANAERYITQELKEYEEKILGAEDKILVLETQ 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
LV ++ E + + + A + LD ++ SFA + + Y RP ++ L I
Sbjct: 527 LYAELVQSLSEFIPAIQINANQIARLDCLL-SFA---TAARENNYIRPVIADDDVLEIHQ 582
Query: 359 GRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E I +I N++ + S+ ++I+TGPNM+GKS L+Q LI +LAQIG +
Sbjct: 583 GRHPVIEKQLPIGEKYIANDVMLDSQTQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 642
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +VD+IFTR+G DN+ STFM EM E A ++ N+S RSL++ DELGR T
Sbjct: 643 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGRGT 702
Query: 475 SSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAW+ EH+ KA T+FA+H L+E+ + +K + V +N++
Sbjct: 703 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVI 762
Query: 532 FKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
F +L + G H +G+ +A++AG+P ++++ A I ++
Sbjct: 763 FLRKLERGGSEH--SFGIHVAKMAGMPKSIVKRANDILKQL 801
>gi|153214934|ref|ZP_01949717.1| DNA mismatch repair protein MutS [Vibrio cholerae 1587]
gi|124115007|gb|EAY33827.1| DNA mismatch repair protein MutS [Vibrio cholerae 1587]
Length = 862
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 370 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MNELCDLLERAI 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 419 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 476
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 477 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 534
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 535 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 586
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 587 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 647 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 706
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 707 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 766
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 767 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
>gi|160887782|ref|ZP_02068785.1| hypothetical protein BACUNI_00185 [Bacteroides uniformis ATCC 8492]
gi|156862724|gb|EDO56155.1| DNA mismatch repair protein MutS [Bacteroides uniformis ATCC 8492]
Length = 871
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 180/581 (30%), Positives = 297/581 (51%), Gaps = 58/581 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +VR+LE++ ++ G S SL +++ T + G RLL+ L+ PLKD++ IN
Sbjct: 267 LDKFTVRSLELMGSMND---GGS----SLLNVIDKTISPMGARLLKRWLVFPLKDVQPIN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL+ + + FF F KE H +++ SKV +
Sbjct: 320 ERLNVV-------EYFFRQPDF-----KELIEEQLHLIGDLERIISKV------AVGRVS 361
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDEDVL 180
++ LK AL A+ + DA + L +I ++C+ SIR RI ID D
Sbjct: 362 PREVVALKVALQAIEPIKAACMDADNASLNHIGEQLNICQ-----SIRDRIDREIDNDP- 415
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK G+ LD RR + + + + E ++P+LK+ +NN
Sbjct: 416 ----PLL--INKGGVIKSGVSAELDELRRIAYSGKDYLLQIQQRESELTEIPSLKIGYNN 469
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+Y+ + HKD K+P+ +I+ N T EL + A + +
Sbjct: 470 VFGYYIEVRNTHKD---KVPAEWIRKQTLANAERYITQELKEYEEKILGAEDKILVLETQ 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
LV ++ E + + + A + LD ++ SFA + + Y RP ++ L I
Sbjct: 527 LYAELVQSLSEFIPAIQINANQIARLDCLL-SFA---TAARENNYIRPVIADDDVLEIHQ 582
Query: 359 GRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E I +I N++ + S+ ++I+TGPNM+GKS L+Q LI +LAQIG +
Sbjct: 583 GRHPVIEKQLPIGEKYIANDVMLDSQTQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 642
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +VD+IFTR+G DN+ STFM EM E A ++ N+S RSL++ DELGR T
Sbjct: 643 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGRGT 702
Query: 475 SSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAW+ EH+ KA T+FA+H L+E+ + +K + V +N++
Sbjct: 703 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVI 762
Query: 532 FKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
F +L + G H +G+ +A++AG+P ++++ A I ++
Sbjct: 763 FLRKLERGGSEH--SFGIHVAKMAGMPKSIVKRANDILKQL 801
>gi|87122440|ref|ZP_01078320.1| DNA mismatch repair protein MutS [Marinomonas sp. MED121]
gi|86162233|gb|EAQ63518.1| DNA mismatch repair protein MutS [Marinomonas sp. MED121]
Length = 868
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 177/572 (30%), Positives = 285/572 (49%), Gaps = 53/572 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID + RNLEI L + TSN +L +L + G+RLL+ L QP +++
Sbjct: 270 VQIDGATRRNLEIDLNLSGS---TSN---TLTSVLDRCSSPMGSRLLKRWLHQPSRNLSI 323
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN R D + L++N + L + K + +R+L +
Sbjct: 324 INARQDAVQNLINN--YLYDLIKPELKEVGDIERILARVALGSARP-------------- 367
Query: 121 TLISSIILLKTALDALPLLAK---VLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ L+ AL+A+P + + + DA L + E + + + I E
Sbjct: 368 ---RDLLRLRFALEAIPKIKQHLIAIDDAHLQALNQQLSPLPE------LTQELAIAIVE 418
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P V R FA G DG LD + + ++ + L + +E + +LK+
Sbjct: 419 NP-----PSVVRDGGIFA--KGYDGELDELQALSTNATDYLAELEQREKERTGINSLKVG 471
Query: 238 FNNRQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
FN G+Y+ I H D + P +++ N T EL + + SA + R
Sbjct: 472 FNRVHGYYIEISRLHSD---QAPVDYVRRQTLKNAERFITPELKTFEDKALSAKSKALAR 528
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ E L+ I E++ L + L LD++ N FA RY RP + +
Sbjct: 529 EKHLYEQLLGTINEELIALQTSSNALSELDVLAN-FAERAERH---RYVRPVIEDKPGIE 584
Query: 356 IDGGRHPILES-IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++ES I FIPN++ +S +++++TGPNM GKSTY++Q+ LI +LA GC+
Sbjct: 585 ILEGRHPVVESVITEPFIPNDLIMSPERSLLMITGPNMGGKSTYMRQIALITLLAHTGCF 644
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + +VDRIFTRMG+ D+L STFM EM ETA ++ N + +SL++MDE+GR T
Sbjct: 645 VPAEAANLSLVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNATPKSLVLMDEVGRGT 704
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AWS +HL + +K +FA+H L+ LA N +H + + F
Sbjct: 705 STFDGLSLAWSAVDHLANQVKCNVLFATHYFELTLLADELKNAANVHLTATEYEDSIVFL 764
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
++ DG YGL +A++AG+P VI+ A+
Sbjct: 765 HKVHDGAAS-QSYGLQVAQLAGVPRDVIQAAK 795
>gi|255744237|ref|ZP_05418190.1| DNA mismatch repair protein MutS [Vibrio cholera CIRS 101]
gi|262149031|ref|ZP_06028175.1| DNA mismatch repair protein MutS [Vibrio cholerae INDRE 91/1]
gi|262169846|ref|ZP_06037536.1| DNA mismatch repair protein MutS [Vibrio cholerae RC27]
gi|379740408|ref|YP_005332377.1| DNA mismatch repair protein MutS [Vibrio cholerae IEC224]
gi|418336386|ref|ZP_12945285.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-23A1]
gi|418342767|ref|ZP_12949565.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-28A1]
gi|421315697|ref|ZP_15766269.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1032(5)]
gi|421330770|ref|ZP_15781252.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1046(19)]
gi|422890581|ref|ZP_16932997.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-40A1]
gi|422901448|ref|ZP_16936816.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-48A1]
gi|422924747|ref|ZP_16957781.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-38A1]
gi|423144071|ref|ZP_17131686.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-19A1]
gi|423148775|ref|ZP_17136135.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-21A1]
gi|424001072|ref|ZP_17744162.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-17A2]
gi|424005232|ref|ZP_17748217.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-37A1]
gi|424023241|ref|ZP_17762906.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-62B1]
gi|424585448|ref|ZP_18025042.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1030(3)]
gi|424594066|ref|ZP_18033405.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1040(13)]
gi|424609496|ref|ZP_18048355.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-39A1]
gi|424644031|ref|ZP_18081786.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-56A2]
gi|424651676|ref|ZP_18089201.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-57A2]
gi|440708747|ref|ZP_20889408.1| DNA mismatch repair protein MutS [Vibrio cholerae 4260B]
gi|443514150|ref|ZP_21080692.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-68A1]
gi|443517964|ref|ZP_21084383.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-71A1]
gi|443537803|ref|ZP_21103660.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-81A1]
gi|449054234|ref|ZP_21732902.1| DNA mismatch repair protein MutS [Vibrio cholerae O1 str. Inaba
G4222]
gi|255738177|gb|EET93569.1| DNA mismatch repair protein MutS [Vibrio cholera CIRS 101]
gi|262021580|gb|EEY40291.1| DNA mismatch repair protein MutS [Vibrio cholerae RC27]
gi|262031176|gb|EEY49796.1| DNA mismatch repair protein MutS [Vibrio cholerae INDRE 91/1]
gi|341626593|gb|EGS51964.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-48A1]
gi|341627101|gb|EGS52429.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-40A1]
gi|341648575|gb|EGS72627.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-38A1]
gi|356421713|gb|EHH75205.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-21A1]
gi|356426204|gb|EHH79528.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-19A1]
gi|356433167|gb|EHH86360.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-23A1]
gi|356437985|gb|EHH91050.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-28A1]
gi|378793918|gb|AFC57389.1| DNA mismatch repair protein MutS [Vibrio cholerae IEC224]
gi|395922438|gb|EJH33254.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1032(5)]
gi|395934623|gb|EJH45361.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1046(19)]
gi|395962947|gb|EJH73235.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-56A2]
gi|395963835|gb|EJH74087.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-57A2]
gi|395977591|gb|EJH86996.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1030(3)]
gi|408009758|gb|EKG47653.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-39A1]
gi|408037204|gb|EKG73604.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1040(13)]
gi|408848827|gb|EKL88864.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-37A1]
gi|408849388|gb|EKL89409.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-17A2]
gi|408873557|gb|EKM12754.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-62B1]
gi|439975843|gb|ELP51950.1| DNA mismatch repair protein MutS [Vibrio cholerae 4260B]
gi|443444559|gb|ELS97830.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-68A1]
gi|443448394|gb|ELT05027.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-71A1]
gi|443466628|gb|ELT41285.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-81A1]
gi|448266231|gb|EMB03460.1| DNA mismatch repair protein MutS [Vibrio cholerae O1 str. Inaba
G4222]
Length = 861
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 273 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 326
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 327 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 368
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 369 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 417
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 418 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 475
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 476 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 533
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 534 ----WEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 585
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 586 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 645
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 646 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 705
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 706 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 765
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 766 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 797
>gi|389795207|ref|ZP_10198338.1| DNA mismatch repair protein MutS [Rhodanobacter fulvus Jip2]
gi|388431115|gb|EIL88214.1| DNA mismatch repair protein MutS [Rhodanobacter fulvus Jip2]
Length = 847
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 169/574 (29%), Positives = 280/574 (48%), Gaps = 45/574 (7%)
Query: 3 IDATSVRNLEI-IEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+DA + RNLE+ P + + +L +L + T G R LR L +PL+ + +
Sbjct: 257 LDAATRRNLELDTHP-------SGRTEHTLLGVLDESVTPMGARALRRWLTRPLRSRDVL 309
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQT 121
R + L+ + L + LR + +R+L + +++ D+
Sbjct: 310 RRRHQAIGSLIDGRR-HEPLREQLRGI-GDLERILARVALR----SARPRDLST------ 357
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
L+ L P L + + S LL ++ + ++ + A + R +
Sbjct: 358 -------LRDGLATAPQLRQQIAAMDSPLLRDLIERIGDHAQTADLLAR--------AIV 402
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
+ P + R A G D LD RR + + L + + + LK+ +N
Sbjct: 403 PQPPVLQRDGGIIA--EGYDAELDELRRLSTHADQYLVELEEREKAASGIGTLKVGYNRV 460
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ I K K P+ + + N T EL + + SA +R E
Sbjct: 461 HGYYIEI-SKAQSDKAPTHYTRRQTTKNAERYITEELKNFEDKVLSAKERSLMRERALYE 519
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
AL+D + E + L A + LD++ + ++ P T+ +AI+ GRH
Sbjct: 520 ALLDTLTETLEPLKSAAAAIAELDVLATLAERAEALD----WSAPQLTDEPGIAIERGRH 575
Query: 362 PILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
P++E + ++ F PN++ + + M+++TGPNM GKSTY++Q LIV+LA IG YVPA +
Sbjct: 576 PVVEKVRDEPFEPNDLILDDNRRMLVITGPNMGGKSTYMRQNALIVLLAHIGSYVPATRA 635
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
I +DRIFTR+G D+L STFM EM ETA ++ N +E SL++MDE+GR TS+ DG
Sbjct: 636 VIGPIDRIFTRIGAGDDLSRGQSTFMVEMSETANILHNATENSLVLMDEVGRGTSTYDGL 695
Query: 481 AIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
++A + HL +AYT+FA+H L+ELA+ YP + +H V +L F +K+G
Sbjct: 696 SLARAAAVHLGQHSRAYTLFATHYFELTELASTYPGIANVHLDAVEYGEQLVFMHAVKEG 755
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
P + +GL +A +AGLP +VI AR + + +
Sbjct: 756 PANR-SFGLQVAALAGLPKSVIADARRTLAELER 788
>gi|229512805|ref|ZP_04402272.1| DNA mismatch repair protein MutS [Vibrio cholerae TMA 21]
gi|229350054|gb|EEO15007.1| DNA mismatch repair protein MutS [Vibrio cholerae TMA 21]
Length = 880
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 292 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 345
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 346 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 387
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 388 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MNELCDLLERAI 436
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 437 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 494
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 495 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 552
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 553 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 604
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 605 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 664
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 665 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 724
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 725 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 784
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 785 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 816
>gi|153826936|ref|ZP_01979603.1| DNA mismatch repair protein MutS [Vibrio cholerae MZO-2]
gi|254291220|ref|ZP_04962016.1| DNA mismatch repair protein MutS [Vibrio cholerae AM-19226]
gi|417819396|ref|ZP_12466013.1| DNA mismatch repair protein MutS [Vibrio cholerae HE39]
gi|421342125|ref|ZP_15792532.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-43B1]
gi|422909058|ref|ZP_16943710.1| DNA mismatch repair protein MutS [Vibrio cholerae HE-09]
gi|423733825|ref|ZP_17707041.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-41B1]
gi|149739239|gb|EDM53507.1| DNA mismatch repair protein MutS [Vibrio cholerae MZO-2]
gi|150422914|gb|EDN14865.1| DNA mismatch repair protein MutS [Vibrio cholerae AM-19226]
gi|340041252|gb|EGR02219.1| DNA mismatch repair protein MutS [Vibrio cholerae HE39]
gi|341636140|gb|EGS60843.1| DNA mismatch repair protein MutS [Vibrio cholerae HE-09]
gi|395945628|gb|EJH56293.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-43B1]
gi|408631828|gb|EKL04351.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-41B1]
Length = 862
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 370 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 419 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 476
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 477 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 534
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 535 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 586
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 587 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 647 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 706
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 707 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 766
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 767 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
>gi|313676390|ref|YP_004054386.1| DNA mismatch repair protein muts [Marivirga tractuosa DSM 4126]
gi|312943088|gb|ADR22278.1| DNA mismatch repair protein MutS [Marivirga tractuosa DSM 4126]
Length = 867
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 176/586 (30%), Positives = 298/586 (50%), Gaps = 56/586 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++RNLE++ P L +L T T G+R ++ ++ P+KD I
Sbjct: 269 MDKFTIRNLELVYPQQEG-------GIPLIQILDKTLTPMGSRQIKKWMVLPVKDKAVIE 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL ++ SN+ L LS L+ + +R++ +V + L+
Sbjct: 322 ERLQIVEAFHSNQDLTEQLSASLKSM-GDVERLISKVAVG--RVNPRELNQ--------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSV--CENEKYASIRKRIGEVIDEDVL 180
LK AL + L K L++++ L + + CE + E+ID ++
Sbjct: 370 ------LKKALGLMVPLKKALEESEEQALKKLSNQINLCE---------YLYELIDSQLM 414
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P T Q I+ G+D LD ++ + + L + E+ + +LK+ +N
Sbjct: 415 E-DAPL--HTNQGNLIREGVDPELDDLKKIAFSGKDYLLQLQKREMEKTGITSLKVAYNK 471
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + HKD K+P +I+ N T EL + A + + +
Sbjct: 472 VFGYYLEVTNSHKD---KVPQEWIRKQTLVNAERYITEELKEYEEKILGAEDKMVVIEQR 528
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
++L+ + VS + A+++ +D ++ SFA + Y +P +E L I
Sbjct: 529 IFQSLLQNAMDFVSPIQQNAKIIAQVDCLL-SFAEIARA---NDYVKPQISETTALDIKL 584
Query: 359 GRHPILESI---HNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E ++IPN++F+ +E+ ++I+TGPNM+GKS L+Q LIV++AQ+GCY
Sbjct: 585 GRHPVIEQQLPHGEEYIPNDVFLDNESQQIMIITGPNMAGKSALLRQTALIVLMAQMGCY 644
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +VD++FTR+G DNL STFM EM ETA ++ N+S+RSL++MDE+GR T
Sbjct: 645 VPAKSAEIGLVDKVFTRVGASDNLSKGESTFMVEMTETASILNNLSDRSLVLMDEIGRGT 704
Query: 475 SSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAWS E L + KA T+FA+H L++LA +P +K + V + +
Sbjct: 705 STYDGVSIAWSIVEFLHNHPKSKAKTLFATHYHELNQLAHDFPRIKNYNVSVKEIDGEII 764
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
F +LK G +G+ +A +AG+P+ V+ A I + K +++
Sbjct: 765 FLRKLKKGGSE-HSFGIHVAHLAGMPNPVVLRANEIMHHLEKDKIR 809
>gi|424635473|ref|ZP_18073497.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-55A1]
gi|408027643|gb|EKG64605.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-55A1]
Length = 844
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 283/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 256 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 309
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 310 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 351
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L+ + R+ E + E+ D E +
Sbjct: 352 -RDLARLRHAMQQLPELHSVMSELKQPHLSEL-RTHAEP---------MDELCDLLERAI 400
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 401 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 458
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 459 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 516
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 517 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 568
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 569 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 628
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 629 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 688
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 689 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 748
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 749 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 780
>gi|354612225|ref|ZP_09030177.1| DNA mismatch repair protein mutS [Halobacterium sp. DL1]
gi|353191803|gb|EHB57309.1| DNA mismatch repair protein mutS [Halobacterium sp. DL1]
Length = 865
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 174/601 (28%), Positives = 297/601 (49%), Gaps = 53/601 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE L + + G + SLF + T + G R L + LL+PL+D
Sbjct: 255 VELDATTQRNLE----LTATMAGEGDG--SLFDTIDHTVSAAGGRRLESWLLRPLQD--- 305
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
LD ++ LR+ ET + +++ S+ +
Sbjct: 306 -RAELDRRQAAVAALADAPLARDALRESLGET--------YDLERLASRTA---GGRADA 353
Query: 121 T----LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
T + ++ LL DAL + + + +LA + R E A +R+ + +
Sbjct: 354 TDLLRIRRTLALLPEVADALTTDPDLAESPAADVLARVDR-----EAVAGLREELAAALA 408
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
+D P R Q ++GG D LD + + + LA++ RE L + +L++
Sbjct: 409 DDP-----PKTLR--QGGLLRGGYDDALDELLAEHREHEQWLDGLADRERERLGVAHLQV 461
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGECY 293
N G+YL + + +P + +V N+ +T EL + +R + G+
Sbjct: 462 DRNKTDGYYLQVGRSETDA-VPDDYREVKTLKNSKRYTTEELETRERHILRVEEERGDLE 520
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
R C L + + E +L L LD + + H + +R+TRP
Sbjct: 521 YRL-FC--DLRERVGEHAELLQDAGRALAELDALASLAEHAAA----NRWTRPELVAGDD 573
Query: 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
L I GRHP++E +F+PN+ ++VTGPNMSGKSTY++QV LIV+LAQ+G
Sbjct: 574 LEIRSGRHPVVEQ-STEFVPNDAGFGPGRRFLVVTGPNMSGKSTYMRQVALIVLLAQVGS 632
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +VD I+TR+G +D L STFM EM+E + ++ +ERSL+V+DE+GR
Sbjct: 633 FVPAGSARIGLVDGIYTRVGALDELAQGRSTFMVEMQELSRILHAATERSLVVLDEVGRG 692
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
T++ DG +IAW+ E++ + ++A T+FA+H L+ LA +V +H R+ + F
Sbjct: 693 TATYDGISIAWAATEYIHNEVRAKTLFATHYHELTALADHLDDVANVHVAAEERDGEVTF 752
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++DG YG+ +A++AG+P V+E +R + R+ +E K +E +++Q +
Sbjct: 753 LRTVRDGATD-RSYGVHVADLAGVPDPVVERSRDVLDRL--REEKAVEARGSASERVQAV 809
Query: 593 Y 593
+
Sbjct: 810 F 810
>gi|424589787|ref|ZP_18029234.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1037(10)]
gi|408036451|gb|EKG72881.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1037(10)]
Length = 862
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 370 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MNELCDLLERAI 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 419 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 476
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 477 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 534
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 535 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 586
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 587 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 647 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 706
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 707 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 766
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 767 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
>gi|419835462|ref|ZP_14358907.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-46B1]
gi|421353350|ref|ZP_15803683.1| DNA mismatch repair protein MutS [Vibrio cholerae HE-45]
gi|423946553|ref|ZP_17733461.1| DNA mismatch repair protein MutS [Vibrio cholerae HE-40]
gi|423975991|ref|ZP_17737008.1| DNA mismatch repair protein MutS [Vibrio cholerae HE-46]
gi|424008109|ref|ZP_17751059.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-44C1]
gi|395954697|gb|EJH65306.1| DNA mismatch repair protein MutS [Vibrio cholerae HE-45]
gi|408662011|gb|EKL32988.1| DNA mismatch repair protein MutS [Vibrio cholerae HE-40]
gi|408666165|gb|EKL36964.1| DNA mismatch repair protein MutS [Vibrio cholerae HE-46]
gi|408858875|gb|EKL98545.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-46B1]
gi|408866396|gb|EKM05779.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-44C1]
Length = 861
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 273 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 326
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 327 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 368
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 369 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 417
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 418 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 475
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 476 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 533
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 534 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 585
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 586 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 645
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 646 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 705
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 706 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 765
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 766 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 797
>gi|339484817|ref|YP_004696603.1| DNA mismatch repair protein mutS [Nitrosomonas sp. Is79A3]
gi|338806962|gb|AEJ03204.1| DNA mismatch repair protein mutS [Nitrosomonas sp. Is79A3]
Length = 866
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 171/585 (29%), Positives = 303/585 (51%), Gaps = 47/585 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLEI E + + +L +L T T G+RLL+ L PL+D
Sbjct: 264 IRMDAATRRNLEISETIRG------ERSPTLLSLLDTCSTNMGSRLLQFWLHHPLRDHAA 317
Query: 61 INTRLDCLDELM--SNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
I RLD + L+ S + ++ LR+F + +R+ K +++ D+
Sbjct: 318 IQKRLDSVAALIGESEQNNYWVARDLLRQF-VDVERITARIALK----SARPRDLSG--- 369
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
L+ +L LP + + + + S ++ + +++ I + E++ +
Sbjct: 370 ----------LRDSLKLLPEVIQAMANGSSERISQLIQAM-------QIEPALFELLRKS 412
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+L P V ++ I G D LD R + E + L + +E +PNLK+ +
Sbjct: 413 LLEE--PGVV-LREGNVIADGYDAELDELRALQNNCGEFLLQLEIREKERTGIPNLKVEY 469
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N GFY+ + H + K+P+ + + + T EL + + SA R +
Sbjct: 470 NRVHGFYIEVTHAHSE-KIPADYRRRQTLKSAERYITPELKAFEDKALSAQDRALAREKY 528
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L++ + + L +A + +D++ +FA + +D YT P+ + ID
Sbjct: 529 LYDELLNVLLGYIHPLQKMAASVAEIDVLC-AFAE--RAQALD-YTAPYLSHEEIFEIDT 584
Query: 359 GRHPILESIHNDFIPNNIFI----SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++ES +F+ N++ + + M+I+TGPNM GKSTY++Q+ LI +LA G Y
Sbjct: 585 GRHPVVESQVENFVANDVQLGADYTGKPQMLIITGPNMGGKSTYMRQIALIALLAHCGSY 644
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + +D+IFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR T
Sbjct: 645 VPAKRVRLGRLDQIFTRIGAADDLASGRSTFMVEMTETANILHNATAQSLVLMDEVGRGT 704
Query: 475 SSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG A+A++ +LLS +++T+FA+H L++LA + ++ +H V +R+ F
Sbjct: 705 STFDGLALAFAIARYLLSKNRSFTLFATHYFELTKLAEEFKQIQNVHLDAVEYKHRIVFL 764
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
++ +GP YGL +A +AG+P +VI+ AR ++ ++ VK+
Sbjct: 765 HKVAEGPAS-QSYGLQVAALAGVPESVIKVARKHLIKLEQESVKK 808
>gi|282901614|ref|ZP_06309532.1| MutS 1 protein [Cylindrospermopsis raciborskii CS-505]
gi|281193490|gb|EFA68469.1| MutS 1 protein [Cylindrospermopsis raciborskii CS-505]
Length = 862
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 185/596 (31%), Positives = 292/596 (48%), Gaps = 76/596 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + SL L T T G R LR LLQPL DI+ I
Sbjct: 306 LDHQTRRNLEISQTVRDGTF-----HGSLLWALNHTTTPMGGRALRRWLLQPLIDIKGIR 360
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+R D ++EL+ N L L + LR+ + +++T + A
Sbjct: 361 SRQDTIEELVENTPLRQDLRKLLRQI------------YDLERLTGR------AGSGTAN 402
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L + LP L++++ DA+S L + +K I + +G+ I HA
Sbjct: 403 ARDLLALADSFSRLPELSQLVADARSPFLKVL-------QKVPPIVEELGKKI-----HA 450
Query: 183 RVPFVARTQ--QCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ TQ + I+ G+D +LD + + + NL R +P LK+ FN
Sbjct: 451 YLVEAPPTQLKEGGLIRSGVDRILDERKATVEADQHWIANLEVDERARTGIPTLKVGFNK 510
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE--------- 291
G+Y+SI + ++P +I+ N T EL R +A +
Sbjct: 511 TFGYYISI-SRSKSDQVPDNYIRKQTLTNEERYITPELKEREARILTARDDLNQLEYEVF 569
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLC-LLDMIVNSFAHTISTKPVDRYTRPHFTE 350
+R E+ A + IR D+S A+VLC L ++ V+ Y RP +
Sbjct: 570 ANLRDEVGSHA--ETIR-DISRAVAAADVLCGLAELAVHQG-----------YCRPQMLQ 615
Query: 351 NGPLAIDGGRHPILES--IHNDFIPNNIFISEAA----------NMVIVTGPNMSGKSTY 398
L I GRHP++E F+PN+ + ++VI+TGPN SGKS Y
Sbjct: 616 GRELEIIDGRHPVVEKSLPAGFFVPNSTGLGGGTTQDSQELSYPDLVILTGPNASGKSCY 675
Query: 399 LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
L+Q+ LI ++AQIG +VPA + + + DRIFTR+G VD+L + STFM EM ETA ++ +
Sbjct: 676 LRQLGLIQLMAQIGSFVPAKSARLGICDRIFTRVGAVDDLSTGQSTFMVEMNETANILNH 735
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVK 517
+ SL+++DE+GR T++ DG +IAW+ E+L + +KA T+FA+H L+ELA+I NV
Sbjct: 736 ATANSLVLLDEIGRGTATFDGLSIAWAVAEYLAAEIKARTVFATHYHELNELASILANVA 795
Query: 518 ILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
V +++ F Q++ G YG+ +AGLP+ VIE A+ + +I K
Sbjct: 796 NYQVTVKELPDQIIFLHQVQPGGAD-KSYGIEAGRLAGLPAVVIERAKQVMGQIEK 850
>gi|389737228|ref|ZP_10190692.1| DNA mismatch repair protein MutS [Rhodanobacter sp. 115]
gi|388436700|gb|EIL93549.1| DNA mismatch repair protein MutS [Rhodanobacter sp. 115]
Length = 858
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 175/576 (30%), Positives = 283/576 (49%), Gaps = 49/576 (8%)
Query: 3 IDATSVRNLEI-IEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+DA + RNLE+ P + + +L +L T T G R LR L +PL+ + +
Sbjct: 269 LDAATRRNLELDTHP-------SGRTEHTLLGVLDETVTPMGARALRRWLNRPLRSRDVL 321
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQT 121
R + L+ + + + L LR + +R+L + +++ D+
Sbjct: 322 RGRHQAIGALIDSRR-YEPLRDQLRGV-GDLERILARVALR----SARPRDLST------ 369
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
L+ L A P L +KD S LL + + ++ + A++ VI++
Sbjct: 370 -------LRDGLLAAPELRGHIKDLDSPLLHTLVERIGDHAETAALLA--SAVIEQP--- 417
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
P + R A G D LD RR + + L + + + LK+ +N
Sbjct: 418 ---PALQRDGGVIA--DGYDAELDELRRLSTHADQYLVELEEREKASSGISALKVGYNRV 472
Query: 242 QGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I H D K+P+ + + N T EL + SA +R
Sbjct: 473 HGYYIEIGKAHSD---KVPTHYTRRQTTKNAERYITEELKQFEDKVLSAKERSLMRERAL 529
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL+D + E + L A + LD++ + ++ P T+ +AI+ G
Sbjct: 530 YEALLDLLIEKLEPLKQAASAIAELDVLATLAERAEALD----WSMPELTDAPGIAIERG 585
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + ++ F PN++ + + M+++TGPNM GKSTY++Q LIV+LA IG YVPA
Sbjct: 586 RHPVVEKVRDEPFEPNDLMLGDDRRMLVITGPNMGGKSTYMRQNALIVLLAHIGSYVPAT 645
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L STFM EM ETA ++ N +E+SL++MDE+GR TS+ D
Sbjct: 646 RAAIGPIDRIFTRIGAGDDLSRGQSTFMVEMSETANILHNATEQSLVLMDEVGRGTSTYD 705
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++A + HL +AYT+FA+H L+ELA P + +H V +L F +K
Sbjct: 706 GLSLARAAAVHLARHCRAYTLFATHYFELTELAAELPAIANVHLDAVEYGEQLVFMHAVK 765
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
DGP + +GL +A +AGLP VI AR + + +
Sbjct: 766 DGPANQ-SFGLQVAALAGLPKAVIADARRTLAELER 800
>gi|167623165|ref|YP_001673459.1| DNA mismatch repair protein MutS [Shewanella halifaxensis HAW-EB4]
gi|189083191|sp|B0TK13.1|MUTS_SHEHH RecName: Full=DNA mismatch repair protein MutS
gi|167353187|gb|ABZ75800.1| DNA mismatch repair protein MutS [Shewanella halifaxensis HAW-EB4]
Length = 859
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 190/627 (30%), Positives = 304/627 (48%), Gaps = 56/627 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L ++ +L +L T T G+R+L+ L QPL+D + I
Sbjct: 271 LDAATRRNLELTVNLQGG------RENTLASVLDNTVTPMGSRMLQRWLHQPLRDHDIIR 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R ++EL+ N + LS+ L+ + +R+ + NA+
Sbjct: 325 ARQVSIEELLGNAN-YEILSEDLKAI-GDIERITTRIALR------------NARPR--- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ AL LP L + L A + L KY S + IGE DE L +
Sbjct: 368 --DFARLRQALALLPQLQQTLTQAAAPHL-----------KYLS--QVIGEFPDELELLS 412
Query: 183 RV-----PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
R P + R I+ G + LD R+ ++ +H L + +++ + LK+
Sbjct: 413 RAVVDNPPMLIR--DGGVIREGYNEELDQWRKLSEGATDYLHELEAREKQQTGISTLKVG 470
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N G+Y+ + ++ +P ++ + N EL + S+ G +
Sbjct: 471 YNRVHGYYIEVSRRE-SDLVPLSYQRRQTLKNTERYIIPELKEHEEKVLSSQGRALALEK 529
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D I + L A LD++ N FA + Y P + + I+
Sbjct: 530 QLWEQLFDLILPKLHELQDFARASAELDVLCN-FAERAESL---NYHCPDLSTAPGIQIE 585
Query: 358 GGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + + FI N + ++ M+IVTGPNM GKSTY++QV LI ++A IGCYVP
Sbjct: 586 AGRHPVVEQVSQSPFIANPVTLNNERKMLIVTGPNMGGKSTYMRQVALITLMAHIGCYVP 645
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I VDRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 646 AEHAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMDEIGRGTST 705
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AWS E+L L+A T+FA+H L++L + NV+ +H V + + F
Sbjct: 706 YDGLSLAWSAAEYLAKHLQAMTLFATHYFELTQLPELLSNVENVHLDAVEHGDSIVFMHA 765
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHA 595
+++G YGL +A +AG+P+ VI A+ ++ ++ + + Q Q + + A
Sbjct: 766 VQEGAASR-SYGLQVAALAGVPNCVISAAKHKLHQLESRDHGKESCDAQQPLQQSISFSA 824
Query: 596 ---AQRLICLKYSNQDEESIRHALQNL 619
+ L L N DE + R AL L
Sbjct: 825 PTPSPALEALAKLNPDELTPRQALDYL 851
>gi|262190767|ref|ZP_06048994.1| DNA mismatch repair protein MutS [Vibrio cholerae CT 5369-93]
gi|262033352|gb|EEY51863.1| DNA mismatch repair protein MutS [Vibrio cholerae CT 5369-93]
Length = 862
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 370 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 419 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 476
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 477 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 534
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 535 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 586
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 587 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 647 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 706
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 707 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 766
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 767 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
>gi|449677928|ref|XP_004208955.1| PREDICTED: mutS protein homolog 4-like, partial [Hydra
magnipapillata]
Length = 663
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 263/462 (56%), Gaps = 38/462 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID T+ R+LE++ L + K+SL+ +L TKT GG RLLR+N+LQP D++TI
Sbjct: 224 IDMTAARHLELVHNLRNP-----KSKQSLYGVLNYTKTAGGARLLRSNILQPPCDLQTIQ 278
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
TR DC++EL+ E+LF L + KF + D ++ PKK KV +
Sbjct: 279 TRFDCVEELVEKEELFLNLQAIISKF-LDVDHLISSTVQIPKKEGIKVFERK-------- 329
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+ II LK ++ + +L L D Q+ L Y+S+ ++ ++A++ ++I VI E+ +
Sbjct: 330 IAEIIFLKHTIELVQILQNALADGQNSLFKAYYQSL-DDSRFANLLEQIKTVIHEESRYQ 388
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDT----------SEAVHNLANKYREELKLP 232
+ RTQ+ FA+K + +A+R C++ E + + +E
Sbjct: 389 KGALNMRTQKLFAVKVDFFCIYILAKRQ-CNSIMGIGTNNRFVELENGIGKMIHQEATST 447
Query: 233 NLKLP--FNNRQGFYLSI---PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKS 287
L L +NN +GF++++ + ++ LPS FI+VV+ + I C+T +L LN R
Sbjct: 448 GLMLTPNYNNTRGFHITLNTYGNNNLVDALPSHFIKVVRAKSVISCTTEDLIKLNTRLDE 507
Query: 288 AAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
+ E Y + + + L+ IR+ + L LAE + LD++V S AH + + Y RP
Sbjct: 508 SLEEIYFLSNMVVGELMKNIRDQIGCLYKLAECISTLDLLV-SLAHACT---LSNYIRPE 563
Query: 348 FTENGPLAIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406
FT+ LA+ RHP+L+ + + IPN+++ S+ +N +++TGPNMSGKSTYL+Q+ L+
Sbjct: 564 FTDT--LALKQSRHPVLDRMSSLPIIPNDVYASDVSNFILITGPNMSGKSTYLRQIALLQ 621
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTE 448
I+AQ G +VPA +++ R+ ++IF R+G+ D++E+N STF E
Sbjct: 622 IMAQCGSFVPAEYASFRLTNQIFVRIGSDDDIETNCSTFKLE 663
>gi|126641297|ref|YP_001084281.1| mismatch repair protein [Acinetobacter baumannii ATCC 17978]
gi|126387181|gb|ABO11679.1| mismatch repair protein [Acinetobacter baumannii ATCC 17978]
Length = 573
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 159/547 (29%), Positives = 283/547 (51%), Gaps = 42/547 (7%)
Query: 43 GTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK 102
G RLL L+QP++D ++ RLD ++ Q ++ + + R++
Sbjct: 2 GGRLLSRTLMQPVRDTALLDARLDAIE-------------QLIQGYHESPVRMVLKEIGD 48
Query: 103 PKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSV 158
++V S+V + +A+ ++ L+ A +P L A V++ +S LL + + +
Sbjct: 49 IERVLSRVA-LGSARPR-----DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQEL 102
Query: 159 CENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAV 218
+ + S+ + + I E+ P + R A G D LD R+ + +
Sbjct: 103 GD---FKSLHQHLMAAIVENP-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFL 152
Query: 219 HNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLEL 278
+L K RE + LK+ +N G+Y+ + + + P+ +I+ N T EL
Sbjct: 153 IDLEIKERERTGISTLKIGYNRVSGYYIELTRAQAE-QAPADYIRRQTLKNTERYITPEL 211
Query: 279 ASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTK 338
S + S+ R + EAL++ +RE+++ L +++ + +D+I N FAH
Sbjct: 212 KSFEDKVLSSESRALAREKALFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR-- 268
Query: 339 PVDRYTRPHFTENGPLAIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKST 397
++ + RP FT + I GGRHP++E++ F PN+ F+ M I+TGPNM GKST
Sbjct: 269 -LNNWARPEFTPETGIKIQGGRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKST 327
Query: 398 YLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQ 457
+++Q LI +LA G YVPA + + +DRIFTR+G+ D+L + STFM EM ET+ ++
Sbjct: 328 FMRQTALISLLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILH 387
Query: 458 NVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516
+ + +SL++MDE+GR TS+ DG ++AW+C L +K +FA+H L+EL + P +
Sbjct: 388 HATNQSLVLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGI 446
Query: 517 KILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
H N L +++ GP H GL +A++AG+P+ VI+ A+ + K++
Sbjct: 447 DNYHVTAQELNGNLILLHKVQQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQ 505
Query: 577 KRMEINC 583
+ ++ +
Sbjct: 506 QHLQTSV 512
>gi|359444318|ref|ZP_09234110.1| DNA mismatch repair protein MutS [Pseudoalteromonas sp. BSi20439]
gi|358041815|dbj|GAA70359.1| DNA mismatch repair protein MutS [Pseudoalteromonas sp. BSi20439]
Length = 861
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 175/589 (29%), Positives = 292/589 (49%), Gaps = 59/589 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + +NLE+ L T L +L T T G+RLL+ + P+++ + +N
Sbjct: 274 LDAPTRKNLELTVNLSGGFENT------LAQVLDKTATAMGSRLLKRRIHTPIRNKDELN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAKKS 119
+RL+ + ++ + QL L LR + +RV+ +P+ +T
Sbjct: 328 SRLNAISAIL-DVQLCSELHDALRDI-GDIERVIARLALHTARPRDLTR----------- 374
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L++ L AL L +L DA +++I E + ++ +R VID
Sbjct: 375 ---------LRSTLQALAPLHSLLNDATDARISHIIAHSKELPELQALLERA--VIDNP- 422
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + R A G + LD R ++ + L + RE + LK+ +N
Sbjct: 423 -----PVLIRDGGVIA--PGYNSELDEWRNLSQGATDVLEQLEQRERERTGISTLKIGYN 475
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + + +P+ +I+ NN EL + + + +
Sbjct: 476 RVHGFFIEVSRANSH-LVPADYIRRQTLKNNERYIIPELKEHEDKVLGSQSKALALEKQL 534
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L + I + L ++A V+ LD ++N+ A T Y +P +N ++I G
Sbjct: 535 YEQLFEFIAPHIEQLQIMASVIADLD-VLNNLAERAQTL---NYAKPELCDNDNISIKQG 590
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + D FI N + ++ M+I+TGPNM GKSTY++Q LIV++A IGCYVPA
Sbjct: 591 RHPVVEQVMKDPFIANPVELNSQRKMLIITGPNMGGKSTYMRQTALIVLMAHIGCYVPAD 650
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR TS+ D
Sbjct: 651 SAKIGNIDRIFTRIGASDDLASGRSTFMVEMTETAAILNNATAQSLVLMDEIGRGTSTYD 710
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++A++ +HL S + A T+FA+H L+ELA P + +H + N+ + F +
Sbjct: 711 GLSLAYATADHLASKIAAKTLFATHYFELTELAEQTPGLVNVHLDAIEHNDTIAFMHTVL 770
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR----------SITSRITKKEV 576
DG +GL +A +AG+P VI A+ S+T+ T+++V
Sbjct: 771 DGAAS-KSFGLQVAALAGVPKAVIAQAKQKLSLLENHQSVTTVTTEQQV 818
>gi|304316821|ref|YP_003851966.1| DNA mismatch repair protein MutS [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778323|gb|ADL68882.1| DNA mismatch repair protein MutS [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 857
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 167/570 (29%), Positives = 302/570 (52%), Gaps = 42/570 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +++NLEI++ + +++ +L +L T T G RLL+ + +PL DIE
Sbjct: 264 MLLDNNTIKNLEIVQSPNR----NNSRDGTLLSVLDQTVTPMGGRLLKRWIEEPLIDIEK 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
IN RLD +DEL ++ F G S R + ++++SK++ + NAK
Sbjct: 320 INLRLDSVDELFND---FKGRSDL---------RNALKGIYDLERLSSKLVYQNINAK-- 365
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ +K +++ LP + ++ S L I+ + + I ++ID+ +
Sbjct: 366 -----DLLSIKVSIERLPKIKDLISKYNSIYLKEIFLKL-------DTLQDIYDLIDKSI 413
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V ++ IK G D +D R++ + + NL +E + LK+ +N
Sbjct: 414 KDEPSTSV---KEGNIIKDGFDKNVDELRKAATNGKSWITNLELNEKERTGIKTLKVGYN 470
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ + I +P +I+ N T EL + + A +
Sbjct: 471 KVFGYFIEVSKSYISS-VPQNYIRKQTLANAERYITPELKEIEEKILGAETKLVELEYEI 529
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ + I+ +++ + + ++ + +LD ++ S A + + Y +P + + I G
Sbjct: 530 FNGIREQIKNEINRIQMTSKYIAVLD-VLTSLAMVAES---NNYVKPIVNDGDRILIKDG 585
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E+I +D FI N+I I E ++I+TGPNM+GKSTY++QV LIV++AQ+G +VPA
Sbjct: 586 RHPVIETIVDDSFISNDIEIDEKKPIMIITGPNMAGKSTYMRQVALIVLMAQVGSFVPAS 645
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
++ I +VDRIFTR+G D+L S STFM EM E + ++ + +++SLI++DE+GR TS+ D
Sbjct: 646 YAEIGIVDRIFTRVGASDDLFSGQSTFMVEMNEVSVILNSATQKSLIILDEVGRGTSTYD 705
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G +IA + E++ +KA T+FA+H L++L +K + V N+ + F ++
Sbjct: 706 GMSIACAILEYIHDKIKAKTMFATHYHELTKLENQLNGIKNYNISVDETNDEIIFLRKII 765
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
G YG+ +A++AGLP+ VI+ A+ I
Sbjct: 766 PGSAD-KSYGIQVAKLAGLPNDVIDNAKKI 794
>gi|417815368|ref|ZP_12462002.1| DNA mismatch repair protein MutS [Vibrio cholerae HCUF01]
gi|340043354|gb|EGR04313.1| DNA mismatch repair protein MutS [Vibrio cholerae HCUF01]
Length = 845
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 257 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 311 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 352
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 353 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 401
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 402 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 459
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 460 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 517
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 518 ----WEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 569
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 570 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 629
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 630 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 689
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 690 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 749
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 750 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 781
>gi|423159208|ref|ZP_17146181.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-33A2]
gi|423163894|ref|ZP_17150683.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-48B2]
gi|424655623|ref|ZP_18092926.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-81A2]
gi|356450335|gb|EHI03064.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-33A2]
gi|356456413|gb|EHI09019.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-48B2]
gi|408057399|gb|EKG92250.1| DNA mismatch repair protein MutS [Vibrio cholerae HC-81A2]
Length = 844
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 256 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 309
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 310 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 351
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 352 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 400
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 401 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 458
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 459 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 516
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 517 ----WEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 568
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 569 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 628
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 629 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 688
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 689 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 748
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 749 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 780
>gi|435853699|ref|YP_007315018.1| DNA mismatch repair protein MutS [Halobacteroides halobius DSM
5150]
gi|433670110|gb|AGB40925.1| DNA mismatch repair protein MutS [Halobacteroides halobius DSM
5150]
Length = 878
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 182/615 (29%), Positives = 315/615 (51%), Gaps = 67/615 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DA + RNLE+ + + +K+ SL +L T T G R L+ + QPL +++
Sbjct: 269 MVLDANTRRNLELTQTMRD-----KSKRGSLLWVLDQTVTAMGGRKLKKWVEQPLLELDR 323
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++E+ N F KE + L + +++ K+ + + ++
Sbjct: 324 IEYRLDAVEEITKN------------IFAKEELKELLTEVYDIERLLGKI--IYGSANAR 369
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LIS LK++L LP + +VL ++ L + ++ + E A + I I ED
Sbjct: 370 DLIS----LKSSLHILPEVKEVLDQFKTPKLKKLQDNLDKLEDVACL---IENSIKED-- 420
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P T+ IK G D LD + + + + +L + RE + +LK+ N
Sbjct: 421 ----PPTTLTEGSI-IKKGYDNQLDELLEAMENGKQWIIDLQKQERERTGISSLKVGHNK 475
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGE---- 291
G+Y+ + ++ +P +++ N+ T EL L + S E
Sbjct: 476 VHGYYIEVTKANLDA-VPEDYVRKQTLSNSERYITPELKDKESVILGAQENSKELEYKLF 534
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
IR ++ E + I++ ++L L +L L ++ +N + YT+P +
Sbjct: 535 VEIRDKVAQE--TERIQKSATILAQLDALLSLAEVALN-----------NDYTKPQLNTD 581
Query: 352 GPLAIDGGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVIL 408
+ I+ GRHP++E + + F+PN+ ++ + ++ I+TGPNMSGKSTY++QV LIV+L
Sbjct: 582 DQIDIEAGRHPVVEEMMEEEVFVPNDTYLDQQSDRFGIITGPNMSGKSTYMRQVALIVLL 641
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQIG +VPA + + +VDRIFTR+G D+L + STFM EM E A ++ N + SLI++D
Sbjct: 642 AQIGSFVPADKAKLSIVDRIFTRVGASDDLTTGQSTFMVEMNEVANILNNATANSLIILD 701
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
E+GR TS+ DG +IAW+ E++ + + A ++FA+H L+EL P V+ ++ V +
Sbjct: 702 EVGRGTSTYDGLSIAWAVTEYISNPEKIGAKSLFATHYHELTELEERLPGVR--NYNVAV 759
Query: 526 RNNRLDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVKRM--EIN 582
+ D F K P YG+ +A++AG+PS V ++ I + ++E K++ + N
Sbjct: 760 KEEGDDVVFLHKIIPGEANQSYGIEVAKLAGVPSEVTNRSKEILDWLEEEEDKKVTEDTN 819
Query: 583 CLQYKQIQMLYHAAQ 597
Q K+ Q+ A Q
Sbjct: 820 QSQKKENQIKEEAGQ 834
>gi|254489938|ref|ZP_05103133.1| DNA mismatch repair protein MutS [Methylophaga thiooxidans DMS010]
gi|224465023|gb|EEF81277.1| DNA mismatch repair protein MutS [Methylophaga thiooxydans DMS010]
Length = 842
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 166/570 (29%), Positives = 292/570 (51%), Gaps = 49/570 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D S +NLE+ + L + ++ +L +L T T G R+LR L++P++D +
Sbjct: 254 IKLDPPSRKNLELEQNL------SGGRENTLISVLDRTATPMGARMLRRWLMRPVRDQKI 307
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R + + + + ++ F +R + +R+L + T++ D
Sbjct: 308 LRQRQEVIQQFI-DQHHFTDCHDLMRSL-GDIERILTRIALR----TARPRD-------- 353
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ L+ L+ LP + ++LK S + ++ R++ + ++ + +IDE
Sbjct: 354 -----FMHLRQMLEILPAMHQLLKPMTSLHIRHLDRTLGTFSELLTLLQTA--IIDEP-- 404
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + R IK G + LD R + S + L + RE + LK+ +N
Sbjct: 405 ----PVLIRDGGV--IKPGFNNELDHLRDLHQNASGFLDKLEKEERERTGVSTLKVGYNK 458
Query: 241 RQGFYLSIPHK-DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ + DI +P+ +++ N T EL + + SA + +
Sbjct: 459 VHGYFIELSRAHDID--VPTEYVRRQTLKNAERYITPELKAFEEQVLSANEKALALEKSL 516
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAID 357
+ L D + +++ L A L LD++ N A T+ Y P F++ + I+
Sbjct: 517 YDGLFDRVAPELAALEHSAAALAELDVLANLAERAETLD------YVAPSFSDVPGIHIE 570
Query: 358 GGRHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + F N++ +S M+I+TGPNM GKSTY++Q LIV++A +G YVP
Sbjct: 571 NGRHPVVEVCQPHPFCANDLKLSGEQPMLIITGPNMGGKSTYMRQTALIVLMAHMGSYVP 630
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I VD++FTR+G D+L S STFM EM E A ++ N ++ SL++MDE+GR TS+
Sbjct: 631 ATKAVIGPVDQVFTRIGASDDLASGRSTFMVEMNEAANILNNATQHSLVLMDEIGRGTST 690
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG A+AWSC E L+ + AYT+FA+H +++L ++ + +H + +++ F Q
Sbjct: 691 FDGLALAWSCAEKLIRDIGAYTLFATHYFEMTQLPALFEKARNVHLDAIEHGDKIVFLHQ 750
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
LKDG + YGL +A++AG+P VI AR
Sbjct: 751 LKDGAAN-QSYGLQVAQLAGVPDDVIAAAR 779
>gi|163802978|ref|ZP_02196865.1| DNA mismatch repair protein [Vibrio sp. AND4]
gi|159173268|gb|EDP58096.1| DNA mismatch repair protein [Vibrio sp. AND4]
Length = 853
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 182/580 (31%), Positives = 289/580 (49%), Gaps = 57/580 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L G+ N +L +L T G+R+L+ L QP++ ++T++
Sbjct: 266 LDAATRRNLELTQNLSG---GSDN---TLAEVLDHCATPMGSRMLKRWLHQPMRCVDTLD 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL EQ F Q + K + +R+L + + D A+
Sbjct: 320 NRLDSIGEL--KEQGLFTDIQPIFKQIGDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
L+ A+ LP L V LA+ Y +K A + EV D E +
Sbjct: 367 ------LRHAMQQLPELEAVTSS-----LAHPYL-----KKLAEFAAPMDEVCDLLERAI 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R + I G + LD R+ +E + L RE + LK+ +N
Sbjct: 411 KENPPVVIR--EGGVIAEGYNAELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNA 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GF++ + + +P ++ Q +K+ S L E LN ++K+ A E +
Sbjct: 469 VHGFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIISELKEHEDKVLNSKSKALAVEKKL- 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + + LA + LD++ N S Y RP + +
Sbjct: 527 ----WEELFDLLMPHLEKMQNLASAISQLDVLQNLAERADSLD----YCRPTLDKEAGIR 578
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E + ++ FI N I + M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 579 IQSGRHPVVEQVTSEPFIANPIELCSNRKMLIITGPNMGGKSTYMRQTALIALMAHIGSY 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 639 VPAESAHIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGT 698
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 699 STYDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFM 758
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P VI+ AR+ S++ +
Sbjct: 759 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARNKLSQLEQ 797
>gi|422921766|ref|ZP_16954973.1| DNA mismatch repair protein MutS [Vibrio cholerae BJG-01]
gi|341647981|gb|EGS72049.1| DNA mismatch repair protein MutS [Vibrio cholerae BJG-01]
Length = 862
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 370 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 419 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 476
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 477 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 534
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 535 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 586
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 587 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 647 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 706
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 707 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 766
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 767 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
>gi|422297519|ref|ZP_16385154.1| DNA mismatch repair protein MutS [Pseudomonas avellanae BPIC 631]
gi|407991047|gb|EKG32991.1| DNA mismatch repair protein MutS [Pseudomonas avellanae BPIC 631]
Length = 846
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 172/590 (29%), Positives = 288/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 257 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLSILL 310
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + C E E L L + + +R+L + NA+
Sbjct: 311 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 353
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R
Sbjct: 354 -----DLARLRDALSALPELQQAMNDLDAPHLQQLAQTASTYPELADLLQR--------A 400
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
++ P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 401 INDNPPAVIRDGGV--LKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 458
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 459 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 517
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 518 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 573
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 574 RHPVVEQVLSTPFVANDLALDDSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 633
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 634 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 693
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 694 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVNNVHLNATEHNERIVFLHRVLP 753
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 754 GPASQ-SYGLAVAQLAGVPGKVITRA--------KEHLQRLETTSLPHEQ 794
>gi|340354919|ref|ZP_08677615.1| DNA mismatch repair protein MutS [Sporosarcina newyorkensis 2681]
gi|339622933|gb|EGQ27444.1| DNA mismatch repair protein MutS [Sporosarcina newyorkensis 2681]
Length = 855
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 170/581 (29%), Positives = 301/581 (51%), Gaps = 49/581 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
++IDA S+RNLE+++ + S K+ +LF +L T T G R LR + QPL +
Sbjct: 252 LSIDANSMRNLELVQTIRSG-----KKEGTLFWVLDETVTAMGARKLRMWIHQPLAQRKA 306
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ + L+ FF + + + D L + ++ D+
Sbjct: 307 IEERLETVSNLVDE---FFLREELVEELKNVYD--LERLAGRISMGSASARDLAQ----- 356
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSV--CENEKYASIRKRIGEVIDED 178
L+ +L +P L K+L +++ +L I + CE+ Y + I E
Sbjct: 357 --------LRNSLTHIPKLQKILSESKRPMLQQIADKMDPCED-TYQLLADAIAE----- 402
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P ++ + IK G + LD R + + + L K R+ + LK+ +
Sbjct: 403 ----NPPLTSK--EGGLIKDGYNEKLDQLRDASRNGKSWLAQLEQKERQATGIKTLKIGY 456
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN--VRNKSAAGECYIRT 296
N G+Y+ I ++ + + + N T EL + N A G+ + T
Sbjct: 457 NRIFGYYIEITKSNVHLADLTRYERKQTLANAERYITTELKEKEELILNAEADGQI-LET 515
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ L A+ + ++E+V + LA V+ LD+++ +FA +S + +RY RP F L I
Sbjct: 516 NLFL-AIREQVKEEVQRIQKLASVVSELDVLL-AFA-VVSER--NRYIRPEFHNGRALDI 570
Query: 357 DGGRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E + H+ +IPN+ +++ +NM+++TGPNMSGKST+++QV L V++AQIGC+
Sbjct: 571 QNGRHPVVEKMMNHSLYIPNSCELADYSNMLLITGPNMSGKSTFMRQVALTVVMAQIGCF 630
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VP + + + D+IFTR+G D++ S STFM EM E+ + + + + RSL++ DE+GR T
Sbjct: 631 VPCEKAVLPITDQIFTRIGAADDVASGQSTFMMEMMESQYALAHATSRSLLLFDEIGRGT 690
Query: 475 SSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG A+A + EH+ + A T+F++H L++L + + +H +N ++ F
Sbjct: 691 STYDGMALAQAMMEHIHEQVGANTLFSTHYHELTKLEDVLARLLNVHVAAKEQNGKVVFL 750
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
++ G YG+ +AE+AGLP+ ++E A+ + R ++
Sbjct: 751 HKVLPGAAD-RSYGIHVAELAGLPAELVERAKKLLQRFEEE 790
>gi|299144077|ref|ZP_07037157.1| DNA mismatch repair protein MutS [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518562|gb|EFI42301.1| DNA mismatch repair protein MutS [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 868
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 183/598 (30%), Positives = 319/598 (53%), Gaps = 53/598 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +S RNLE+++ ++ T NK +SL +L TKT G+R L+ + +PL + IN
Sbjct: 270 LDESSKRNLELVKGIN-----TGNKSQSLLEILDKTKTSMGSRELKKWIEEPLLNECAIN 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRV---LCHFCFKPKKVTSKVLDVDNAKK- 118
R D ++EL + L L L++ + +R+ + + PK++ S ++ +++ K
Sbjct: 325 DRFDKINELKRDLLLLDDLKLQLKEIY-DIERLSVKISNRTITPKEIISLLISLNSIKNI 383
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
LISS D L L+ K A+S + ASIRKRI ++I +D
Sbjct: 384 KNILISS--------DNLTLI----KIAESL------------DSLASIRKRIADIIIDD 419
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P V + F IK G LD + E + +L +K R+ + LK+ +
Sbjct: 420 ------PPVNIDENRF-IKTGYSTELDELFAASEKGREWILSLEDKERKRTSIKGLKIKY 472
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+++ + K ++P +I+ + ++EL + + S+ GE +
Sbjct: 473 NKILGYFIEVT-KSYSNQVPKDYIRKQTLVGSERYFSIELKEMESKLLSSKGEAFKLQME 531
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR-YTRPHFTENGPLAID 357
++L + + ++ + +A+ + LD++V ++ T +D Y RP +NG + I
Sbjct: 532 IYKSLKEFLANNIIQIQKVAKNISKLDVLV-----SLCTVAIDNNYVRPSINKNGIIEIK 586
Query: 358 GGRHPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHPI+E + F+PN+ + N++ I+TGPNM+GKSTY++QV +IVI+A +G Y
Sbjct: 587 NGRHPIVELKLQEELFVPNDTLLDTNNNLIHIITGPNMAGKSTYMRQVAIIVIMAHMGSY 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VP + I +VD+IFTR+G DNL STFM EMKE A +++N ++ SLI++DE+GR T
Sbjct: 647 VPCESANISLVDKIFTRIGASDNLAKGDSTFMVEMKEVANIVKNATKNSLIILDEVGRGT 706
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG +IAW+ E+L++ + A T+FA+H L L+ Y N+ L V +N+ + F
Sbjct: 707 STYDGLSIAWALVEYLVTNIHAKTLFATHYHELVNLSNKYNNINNLTISVEKQNDSIVFL 766
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQM 591
++ +G + YG+ +A++AG+ +I+ + I I E ++ N + +I++
Sbjct: 767 RKIVEGFSN-NSYGIDVAKLAGINDFIIQRSNEILEFIQNNEDMNIKNNIAKKDKIKV 823
>gi|194334404|ref|YP_002016264.1| DNA mismatch repair protein MutS [Prosthecochloris aestuarii DSM
271]
gi|194312222|gb|ACF46617.1| DNA mismatch repair protein MutS [Prosthecochloris aestuarii DSM
271]
Length = 875
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 182/586 (31%), Positives = 286/586 (48%), Gaps = 53/586 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLEII +H G+ N SL H++ T+ G R LR LL PLK +
Sbjct: 278 MTLDLQTRRNLEIIFSMHD---GSMNG--SLLHVIDRTRCPMGARQLRRWLLHPLKQMAP 332
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D +DEL + + L + + + +R L +
Sbjct: 333 ILQRHDAVDELSRHPDVRRELGEVIGSI-HDLERALSRIA-----------------TLR 374
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ + +L +AL+ LP L + ++S L + R + + A +RI E ID D
Sbjct: 375 SMPREVRMLGSALEQLPRLQGLFDQSESSRLCFLSRRLSMLPELA---RRIDEAIDPDA- 430
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A + I+ G + LD R E + + + R + LK+ +N
Sbjct: 431 ------GATMRDGGYIREGYNAELDSLRSLSSTAKERLLEIQQQERAATTISTLKVQYNK 484
Query: 241 RQGFYLSIPHKDIQGKLPSTF--IQVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
G+Y+ + + K+P+ + Q + + L E L KS + E +
Sbjct: 485 VFGYYIEVSRAN-SDKVPAYYEKKQTLVNAERYTIPALKEYEETILTAEEKSLSLEQRLF 543
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E+C +A+ + + +AE+ CL VN+ + RY +P E L
Sbjct: 544 RELC-QAIASEAGQIQTNAESIAELDCLCSFAVNADEY--------RYCKPVMVEEPVLR 594
Query: 356 IDGGRHPILESI---HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
I GRHP+LE I ++ N+ E M+IVTGPNM+GKS+YL+Q+ LI +LAQ+G
Sbjct: 595 IQNGRHPVLERIVDVDEPYVSNDCLFDERQRMLIVTGPNMAGKSSYLRQIGLISLLAQVG 654
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I +VDRIFTR+G DNL S STFM EM E A ++ N + SLI++DE+GR
Sbjct: 655 SFVPADEAEIGLVDRIFTRVGASDNLASGESTFMVEMNEAASILNNATRSSLILLDEVGR 714
Query: 473 ATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TS+ DG +IAW+ E++ S + A T+FA+H L+EL V + V +R+
Sbjct: 715 GTSTYDGMSIAWAMSEYIHSAIGARTLFATHYHELAELEERLDGVFNYNATVTETADRVV 774
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
F ++ G YG+ +A +AG+PS VI+ A+ I S + +E++
Sbjct: 775 FLRKIVRGASD-NSYGIEVARMAGMPSGVIQRAKEILSGMEGREIE 819
>gi|441499742|ref|ZP_20981917.1| DNA mismatch repair protein MutS [Fulvivirga imtechensis AK7]
gi|441436482|gb|ELR69851.1| DNA mismatch repair protein MutS [Fulvivirga imtechensis AK7]
Length = 869
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 177/589 (30%), Positives = 302/589 (51%), Gaps = 62/589 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++RNLE+I P H G L +L T T G+RLL+ ++ PLK+I IN
Sbjct: 269 LDKFTIRNLELIYPQHDG--GVP-----LIDVLDCTVTPMGSRLLKKWMVLPLKEITAIN 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFC---FKPKKVTS--KVLDVDNAK 117
RL + N++L + Q L++ + +R++ P+++ K L + A
Sbjct: 322 QRLKTVKGFYENQELLDDIQQNLKQI-GDLERLISKVAVGRINPREMNQLKKALQ-NTAP 379
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
QTL +S + + L LA + + FLL I + + E
Sbjct: 380 IKQTLQAS------SFEELKKLADQINPCE-FLLEKINKELKE----------------- 415
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
VP A I+ G++ LD R+ + + + + E +P+LK+
Sbjct: 416 -----EVPLTANVGGL--IRDGVNEELDELRKIAYSGKDYLIQIQKREVERTGIPSLKIA 468
Query: 238 FNNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+N G+YL + HK+ K+PS +I+ N T EL + +A + ++
Sbjct: 469 YNKVFGYYLEVSNAHKE---KVPSEWIRKQTLVNAERYITEELKIYEDKILNAEEKLFVI 525
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ LV + + V+ + A VL +D + NSFA + ++Y P ++ +
Sbjct: 526 EQQLFMELVTSAADYVTQIQQNARVLATIDCL-NSFAIIAKS---NKYVMPEVNDSTAID 581
Query: 356 IDGGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI 411
I GRHP++E + +IPN++F+ ++ ++I+TGPNM+GKS L+Q LIV++ Q+
Sbjct: 582 IKEGRHPVIEKQLPLGESYIPNDVFLDNDHQQIMIITGPNMAGKSALLRQTALIVLMTQM 641
Query: 412 GCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELG 471
G +VPA ++I ++D++FTR+G DNL STFM EM ETA ++ N+S+RSL++MDE+G
Sbjct: 642 GSFVPAKSASIGIIDKVFTRVGASDNLSKGESTFMVEMTETASILNNLSDRSLVLMDEIG 701
Query: 472 RATSSSDGFAIAWSCCEHLLSLKAY---TIFASHMENLSELATIYPNVKILHFYVVIRNN 528
R TS+ DG +IAWS E L + + Y T+FA+H L++L +P +K + V +
Sbjct: 702 RGTSTYDGVSIAWSIVEFLHNHRDYRVKTLFATHYHELNQLTEDFPRIKNFNVSVKEVGD 761
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
++ F +LK+G +G+ +A++AG+P+ V+ A I + K + K
Sbjct: 762 KIIFMRKLKEGGSE-HSFGIHVAQLAGMPNKVVIRANEIMHFLEKDKHK 809
>gi|448589693|ref|ZP_21649852.1| DNA mismatch repair protein MutS [Haloferax elongans ATCC BAA-1513]
gi|445736121|gb|ELZ87669.1| DNA mismatch repair protein MutS [Haloferax elongans ATCC BAA-1513]
Length = 905
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 171/582 (29%), Positives = 295/582 (50%), Gaps = 58/582 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E +H ++ SLF + T T G RLLR L +P +D +
Sbjct: 259 LELDATTQRNLELTETMHG------DRSGSLFDTIDHTVTAPGGRLLREWLTRPRRDRDE 312
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D ++ L S +E R + + +++ S+
Sbjct: 313 LARRHDAVESLASA------------ALARERVRDVLDGAYDLERLASRA------ASGS 354
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQ--SFLLANIYRSVCENEKYASIRKRIGEVIDED 178
S+++ ++ LD LP LA ++ + LA++ + + + A ++ + + + ED
Sbjct: 355 ADASALLSVRDTLDILPALADAIEGTELADTPLADVV-ARPDRDAAADLQAELDDALAED 413
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARR-----SFCDTSEAVHNLANKYREELKLPN 233
P TQ KG + L D+ R S+ DT LA++ + + L +
Sbjct: 414 ------PPKTVTQGGLFQKGYDEELDDLIERHESAKSWIDT------LADREKRQHGLSH 461
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAG 290
+ + N G+Y+ + K + ++P + Q+ N+ T EL +R + A G
Sbjct: 462 VTVDRNKTDGYYIQV-GKSVADQVPDHYRQIKTLKNSKRFVTEELEEKERDILRLEEARG 520
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
+ L +RE V+ L + + V++ A + + +TRP TE
Sbjct: 521 DLEYD-------LFQDLRERVAAHAELLQDVGRALAEVDALASLAAHAAGNGWTRPELTE 573
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
G L ++ GRHP++E+ DF+PN++ + + +IVTGPNMSGKSTY++Q LI +LAQ
Sbjct: 574 PGVLHVEAGRHPVVETT-TDFVPNDLHMDDERGFLIVTGPNMSGKSTYMRQAALITLLAQ 632
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G +VPA +TI VVD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE+
Sbjct: 633 VGSFVPADAATIGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDEV 692
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA V +H R+
Sbjct: 693 GRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTSLADHLDRVANVHVAADERHGD 752
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+ F + DGP YG+ +A++AG+P V++ A + R+
Sbjct: 753 VTFLRTVVDGPTDR-SYGIHVADLAGVPRPVVDRASDVLDRL 793
>gi|448322528|ref|ZP_21511998.1| DNA mismatch repair protein MutS [Natronococcus amylolyticus DSM
10524]
gi|445601286|gb|ELY55275.1| DNA mismatch repair protein MutS [Natronococcus amylolyticus DSM
10524]
Length = 897
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 174/578 (30%), Positives = 286/578 (49%), Gaps = 52/578 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA ++R+LE+ EP + + +L +L T + G R LR L +PL + + I
Sbjct: 294 LDAVALRSLELFEPRAV----RAREDATLIGVLDETASALGGRALRDWLRRPLLEPDRIE 349
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++EL + Q L + LR + +++ ++ + +
Sbjct: 350 ARLDAVEELTGSVQTREHLHELLRD------------VYDLERLIGRI------SRERAN 391
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ L +P + + L DA L + E + A +R+ I + I D
Sbjct: 392 ARDLRSLRDTLAVVPEIRERLVDADCARLRELRD---ELDPLADVRELIDDAIVSD---- 444
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + T+ + G D LD R + D + + +L RE + +LK+ +N+
Sbjct: 445 --PPIEITEGGI-VAEGYDAHLDDLRGTARDGKQWIDDLEANERERTGIDSLKVGYNSVH 501
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + +++ +P + + N+ T EL R G E+ E
Sbjct: 502 GYYIEVTNPNLEA-VPEDYQRRQTLKNSERFVTPELKE---REDEIVGAEERADELEYEL 557
Query: 303 LVD---AIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA---- 355
+ A+ ++V + LA+ L +D +V S A T++ + Y RP T + A
Sbjct: 558 FCEVRSAVADEVERVQALADALATVDALV-SLA-TVAAQY--DYCRPEITAHSGEASDGL 613
Query: 356 ---IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
I+GGRHP++E F+PN +S + ++TGPNMSGKSTY++QV IV+LAQ+G
Sbjct: 614 EIDIEGGRHPVVERTQESFVPNGASLSADRRLAVITGPNMSGKSTYMRQVAQIVLLAQVG 673
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I VDRIFTR+G D++ STFM EM E A +++ RSL+++DE+GR
Sbjct: 674 SFVPAESARISPVDRIFTRVGASDDIAGGRSTFMIEMDELATILREADGRSLVLLDEVGR 733
Query: 473 ATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TS++DG AIA + EHL + A T+FA+H L+ELA P LHF V R +
Sbjct: 734 GTSTADGLAIAQAITEHLHDEVGATTLFATHHHPLTELAEALPAAFTLHFEVEQREGEVV 793
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
F ++ G YG+ +A AG+P V+E +R + +
Sbjct: 794 FHHEIAPGA-ATGSYGVEVATAAGVPEDVVERSRELVA 830
>gi|429887687|ref|ZP_19369197.1| DNA mismatch repair protein MutS [Vibrio cholerae PS15]
gi|429225256|gb|EKY31523.1| DNA mismatch repair protein MutS [Vibrio cholerae PS15]
Length = 861
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 273 LDAATRRNLELT---HNLSGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 326
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 327 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 368
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 369 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 417
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 418 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 475
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 476 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 533
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 534 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 585
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 586 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 645
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 646 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 705
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 706 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 765
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 766 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 797
>gi|169824440|ref|YP_001692051.1| DNA mismatch repair protein [Finegoldia magna ATCC 29328]
gi|238687741|sp|B0S1C1.1|MUTS_FINM2 RecName: Full=DNA mismatch repair protein MutS
gi|167831245|dbj|BAG08161.1| DNA mismatch repair protein [Finegoldia magna ATCC 29328]
Length = 856
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 182/581 (31%), Positives = 302/581 (51%), Gaps = 44/581 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ SV NLEI + L+ T++K SLF +L TKT G+RLL + L +PL D E
Sbjct: 257 MEIDSNSVINLEIQKNLY-----TNSKNGSLFGVLNHTKTSMGSRLLHSYLERPLMDKEE 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + ++E+ + +L L L + DR++ +K NAK
Sbjct: 312 ILIRQNRVEEIFEDYELLVNLENCLDGI-YDLDRLIAKLSYKSA----------NAK--- 357
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I LK +++ +P L +L N EK +R I ++ID+ ++
Sbjct: 358 ----DLIALKVSIEKIPYLKNLLN-------CNKKNVQLIGEKLDDLRD-IYDLIDKSIV 405
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V T+ IK LD R + + + ++ L + NLK+ FN
Sbjct: 406 DD--PPVILTEGNL-IKPNFSNELDQLRYNRVNGKNELVEYEMSEKDRLGIKNLKIVFNK 462
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
+ G+++ + ++ K+ + + N+ T +L ++ + + E +
Sbjct: 463 KLGYFIDVTKSNLN-KVGEDYEKRQTLTNSSRFKTKQLEAIESKILDSEDEIFELEYKIF 521
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E + I E++S + A+++ ++D + NS A ++ Y +P G + + R
Sbjct: 522 EDIRKIILENLSRIKKSADLIAIID-VSNSLAKCAY---LNNYIKPDINTYGLIDVLESR 577
Query: 361 HPILE-SI-HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HPI+E S+ ++FI N+I I N + ++TGPNMSGKSTYL+QV LI IL QIG +VPA
Sbjct: 578 HPIVELSVGQSEFITNDILIGSGKNDIQLITGPNMSGKSTYLRQVALICILNQIGSFVPA 637
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I +VD+IFTR+G+ DNL STFM EMKE + +++ + SL+V+DE+GR TS+
Sbjct: 638 TKANISIVDKIFTRIGSSDNLFKGESTFMVEMKEMSNIIKYATSNSLLVLDEIGRGTSTY 697
Query: 478 DGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+ E++ +KA T+FA+H L+EL N+ + + N+ + F ++
Sbjct: 698 DGLSLAWAIVEYISKDIKAKTLFATHYHELTELEKKLDNLINMKVDIKETNDSIIFLRKI 757
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
G YG+ +AE+AG+P T+I+ A+SI I K++ K
Sbjct: 758 TRGSTD-KSYGIEVAELAGMPKTLIKRAKSILKEIDKEDTK 797
>gi|379772220|gb|AFD18710.1| DNA mismatch repair protein [Pseudomonas fluorescens]
Length = 860
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 175/573 (30%), Positives = 280/573 (48%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 323
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCLLDRYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + D ++ L + + + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPQLQVAMADLEAPHLQRLAATTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 531 YEALLEDLISQLPPLQDTASALAELDVLSNLAERALNLD----LNCPTFVSEPCMRISQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAQLRAYTLFATHYFELTVLPEAEPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVIVRAREHLSRL 798
>gi|153829924|ref|ZP_01982591.1| DNA mismatch repair protein MutS [Vibrio cholerae 623-39]
gi|148874612|gb|EDL72747.1| DNA mismatch repair protein MutS [Vibrio cholerae 623-39]
Length = 862
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 370 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 419 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 476
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 477 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 534
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 535 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 586
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 587 IQGGRHPVVERVVNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 647 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 706
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 707 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 766
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 767 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
>gi|399003101|ref|ZP_10705772.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM18]
gi|398123505|gb|EJM13054.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM18]
Length = 895
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 173/573 (30%), Positives = 283/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 306 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 359
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + E+L L + + +R+L + NA+
Sbjct: 360 ARQTSITCLLDRYRFEKLQPQLKEI-----GDIERILARIGLR------------NARPR 402
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + ++ + + + + A++ ++ +ID
Sbjct: 403 -----DLARLRDALGALPELQMAMAELEAPHIIQLATTTSTYPELAALLEKA--IIDNP- 454
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 455 -----PAVIRDGGV--LKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYN 507
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + + SA R ++
Sbjct: 508 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKML 566
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 567 YEALLEDLIAQLPPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVSEPCMRISQG 622
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 623 RHPVVEQVLTTPFVANDLSLDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 682
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 683 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 742
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 743 GLSLAWAAAERLAQLRAYTLFATHYFELTVLPEAQPLVANVHLNATEHNERIVFLHHVLP 802
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR SR+
Sbjct: 803 GPASQ-SYGLAVAQLAGVPSEVIVRAREHLSRL 834
>gi|321257282|ref|XP_003193534.1| mismatch repair-related protein [Cryptococcus gattii WM276]
gi|317460004|gb|ADV21747.1| mismatch repair-related protein, putative [Cryptococcus gattii
WM276]
Length = 848
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 192/638 (30%), Positives = 321/638 (50%), Gaps = 53/638 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID + +NLE++ + L T+ +L+ +L T G RLLR +LQP +
Sbjct: 222 MFIDIQTAKNLELV---RNNL--TNKATHTLYSVLNHCHTPMGMRLLRTCILQPSNVLTI 276
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I RLD + EL++ ++ L L K + + ++ S +LD+ + +S
Sbjct: 277 IEGRLDAVQELVTAQEKLTALRSKLSTVSKLDLESIVAQ-----ASRISLLLDLMDYLQS 331
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIY--RSVCENEKYASIRKRIGEVIDE 177
I+ I L L ++ + L D Q L N++ S C + S+RK
Sbjct: 332 IKSIN-IELAGERCKLLDMITRCLSDKQ---LDNVFCIVSNCLSRDATSLRKN------- 380
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
R AR + FA+K G LLD+AR+S+ + + +++L ++ + L
Sbjct: 381 -----RKHQNARIARLFAVKAGFAPLLDVARQSYQENLQDIYDLESEVNRKY---GLNCQ 432
Query: 238 FNNRQG-FYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
N G F S+P +G LPS FI + K N I S+ EL + + E + +
Sbjct: 433 IENVGGTFQFSVPSGQPEGLLPSEFIGIEKAKNKIRFSSQELLKRCAKLSQSHQEVLLIS 492
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ L+ ++ D+ L AE + LDMI SFA + Y RP F E LAI
Sbjct: 493 GKTINDLIAQVKHDLGGLYHCAEAIATLDMIA-SFAFSALN---SNYIRPDFKET--LAI 546
Query: 357 DGGRHPILESI--HNDFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
GGRHPIL+ + D IPNNI+ + A I+ GPNMSGKSTYL+Q+ L+ + A IGC
Sbjct: 547 HGGRHPILDKLLGAGDCIPNNIYAARGPATFQIIQGPNMSGKSTYLKQIGLLTVQAMIGC 606
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA ++ + D + +R+ +++E STF +EM +A V+ S RSL+++DELGR
Sbjct: 607 FVPAEYACFILHDCLLSRLSNDNSMEKCLSTFASEMAASAMVLGLASHRSLVLIDELGRG 666
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL-- 530
TSS +G ++ + E L++ ++ F +H ++L + P V LH V L
Sbjct: 667 TSSLEGIGLSHAIAESLITRQQSIVFFTTHFQDLGVILGNLPGVVKLHLKVQCNTKALSS 726
Query: 531 -----DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINC-- 583
F +++ +G + HYGL +A++A LPSTV++ A + +++++ E + + N
Sbjct: 727 TEFSTSFAYKVAEGAAPMEHYGLEIAKLASLPSTVLQRASEVAAQLSELEEQGRQSNLGN 786
Query: 584 LQYKQIQMLYHAAQRLICLKYSNQ-DEESIRHALQNLK 620
++ ++L+ +L ++ S++ D +++ LQNL+
Sbjct: 787 TSMRRRKILWELRAKLKQVQSSSRLDNDTLGEFLQNLQ 824
>gi|388456103|ref|ZP_10138398.1| DNA mismatch repair protein MutS [Fluoribacter dumoffii Tex-KL]
Length = 848
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 174/598 (29%), Positives = 306/598 (51%), Gaps = 48/598 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA++ ++LE+ E + + + SL +L T + G+RLLR L +PLK
Sbjct: 262 LQLDASTQKHLELFENM------SGGHENSLLSLLDKTASSMGSRLLRRWLGRPLKQHNQ 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I +R + + E+M +Q L + LR+ + +R+ K +
Sbjct: 316 IKSRQNAIKEIMHLQQ-GVTLYELLRQV-CDVERIASRIALKSARP-------------- 359
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ L L LP L VL +S L + ++ + +++ + I E+
Sbjct: 360 ---RDLVALNHTLALLPELNSVLAYNRSELTIQLKENI---KPLPVLQQLLSSAIIENP- 412
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + R A G D LD R ++ + L + ++ L LK FNN
Sbjct: 413 ----PVLIRDGGVIA--SGFDEELDELRILSTRANDKLLQLELEEKQRTGLSTLKFGFNN 466
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
QG+Y+ + K K P + + N T EL + SA + R +
Sbjct: 467 VQGYYIEL-SKSQAEKAPPHYHRKQTLKNVERYITPELKQFEEKVLSAQVKALAREKWLY 525
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFTENGPLAIDGG 359
E L+ I+ ++ LTLLA+ L LD++V T++ + + + P ++I+ G
Sbjct: 526 ENLLLEIQNYLNELTLLAQELAKLDVLV-----TLAERAQNFNWCCPALVPESQISIEAG 580
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + + FI N++ + + N++++TGPNM GKSTY++Q LIV+LA +G +VPA
Sbjct: 581 RHPVIEQLLQERFIANDLHLKPSQNILLITGPNMGGKSTYMRQTALIVLLAHMGSFVPAK 640
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
T+ +DRIFTR+G D+L S STFM EM ETA +++ + SL+++DE+GR TS+ D
Sbjct: 641 SVTLGPIDRIFTRIGASDDLASGRSTFMVEMTETAQILRQATNESLVLIDEIGRGTSTYD 700
Query: 479 GFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G A+A++ C +L ++KAYT+F++H L+ L +P ++ +H + R+ F ++++
Sbjct: 701 GMALAYASCTYLATTIKAYTLFSTHYFELTHLPQQWPCIRNVHLQASLDTGRIIFLYRVE 760
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE---VKRMEINCLQYKQIQML 592
GP + YGL +AE+AG+P+ V++ A + +I + + + +I +Q Q +L
Sbjct: 761 PGPANR-SYGLEVAELAGIPAEVLKIAHTQLKQIQNQSPPIISKPQIEYVQQSQSPIL 817
>gi|319940116|ref|ZP_08014470.1| DNA mismatch repair protein mutS [Streptococcus anginosus 1_2_62CV]
gi|319810830|gb|EFW07157.1| DNA mismatch repair protein mutS [Streptococcus anginosus 1_2_62CV]
Length = 853
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 180/582 (30%), Positives = 293/582 (50%), Gaps = 58/582 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D +++ +L++ E T K SL+ ++ TKT GTRLLRA + +PL D E
Sbjct: 250 LQMDYSTMASLDLTENAR-----TGKKHGSLYWLMDETKTAMGTRLLRAWIQRPLIDKER 304
Query: 61 INTRLDCLDELMSNEQLFF---GLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
I R D + + + FF LS L+ + +R+ F
Sbjct: 305 IVKRQDVVQVFLDH---FFERSDLSDTLKGV-YDIERLASRVSF---------------- 344
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+T ++ L L +P + +LK S +L ++ + E + A++ I I
Sbjct: 345 -GKTNPKDLLQLAATLSHVPQIKGILKGIDSPVLEDLIAKLDEIPELANL---IQLAISP 400
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D P V + IK G D LD R D + + ++ K RE + NLK+
Sbjct: 401 DA-----PNV--ITEGNIIKTGFDETLDKYRVVMRDGTSWIADIEAKEREASGINNLKID 453
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGEC 292
+N + G+Y + + ++ +PS F + N+ T ELA L R KSA E
Sbjct: 454 YNKKDGYYFHVTNSQLE-HVPSHFFRKATLKNSERFGTEELARIEGEMLEAREKSANLEY 512
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
I I EA + + L LA+ L +D ++ SFA + + RP F E
Sbjct: 513 EIFMRIREEA-----GKYIKRLQSLAQTLATVD-VLQSFAAVAEKQ---HFVRPEFIEQR 563
Query: 353 PLAIDGGRHPILESIHN--DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ ID GRH ++E + +IPN+I + E N+ ++TGPNMSGKSTY++Q+ +IVI+AQ
Sbjct: 564 SIQIDKGRHAVVEKVMGAQTYIPNSISMDENVNVQLITGPNMSGKSTYMRQLAIIVIMAQ 623
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G YV A + + + D IFTR+G D+L S STFM EM E + +E SLI+ DEL
Sbjct: 624 MGSYVSAESAQLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANHAISQATENSLILFDEL 683
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR T++ DG A+A + E++ + A T+FA+H L+EL+T ++ +H + ++ +
Sbjct: 684 GRGTATYDGMALAQAIIEYIHNQTGAKTLFATHYHELTELSTSLTQLENVHVATLEKDGQ 743
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+ F +++ GP YG+ +A++AGLP+ ++ A I +R+
Sbjct: 744 VTFLHKIEVGPAD-KSYGIHVAKIAGLPNDLLTRADQILTRL 784
>gi|398792417|ref|ZP_10553048.1| DNA mismatch repair protein MutS [Pantoea sp. YR343]
gi|398213146|gb|EJM99741.1| DNA mismatch repair protein MutS [Pantoea sp. YR343]
Length = 847
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 178/569 (31%), Positives = 281/569 (49%), Gaps = 51/569 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L + + +L +L T T G+R+L+ L PL+D+ TI
Sbjct: 265 MDAATRRNLEITQNLAGGI------ENTLAAILDKTVTPMGSRMLKRWLHMPLRDVTTIA 318
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + EL S Q L LR+ + +R+L + T++ D+
Sbjct: 319 RRQESIAELQSLSQ---ELQPVLRQV-GDLERILARLALR----TARPRDLAR------- 363
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L + L+ ++ L N+ + E + +R+ + I E
Sbjct: 364 ------MRHAFQQLPELNQQLEGVEATQLINLRSQMGE---FNELRELLEHAIIESP--- 411
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE+L L LK+ FN
Sbjct: 412 --PVLVRDGGVIA--PGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGFNAIH 467
Query: 243 GFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ + Q L P +++ N EL + ++ G+ + +
Sbjct: 468 GYYIQVSRG--QSHLVPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKGLYD 525
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L D + + L + A L LD++ N A T++ Y RP E + I G
Sbjct: 526 ELFDRLLPHLEALQISAAALSELDVLANLAERAWTLN------YCRPVLQEKAGIRITAG 579
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + + FI N + +S M+I+TGPNM GKSTY++Q LI ++A IG YVPA
Sbjct: 580 RHPVVEQVLKEPFIANPLSLSPQRRMLIITGPNMGGKSTYMRQTALIALMAWIGSYVPAE 639
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ D
Sbjct: 640 ETVIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYD 699
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L + +KA T+FA+H L+ L V +H V + + F ++
Sbjct: 700 GLSLAWACAESLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAVEHGDTIAFMHSVQ 759
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARS 566
DG YGL +A +AG+P VI+ AR+
Sbjct: 760 DGAAS-KSYGLAVAALAGVPKDVIKRARN 787
>gi|448560973|ref|ZP_21634325.1| DNA mismatch repair protein MutS [Haloferax prahovense DSM 18310]
gi|445721205|gb|ELZ72873.1| DNA mismatch repair protein MutS [Haloferax prahovense DSM 18310]
Length = 912
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 171/592 (28%), Positives = 288/592 (48%), Gaps = 62/592 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E +H ++ SLF + T T G RLLR L +P +D +
Sbjct: 258 LELDATTQRNLELTETMHG------DRSGSLFDTIDHTVTSPGGRLLREWLTRPRRDRDE 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD + L S +E R + + +++ S+ +
Sbjct: 312 LARRLDAVQSLASA------------ALARERVREVLDGAYDLERLASR------SASGS 353
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
S ++ ++ L LP LA ++ A S L + R + D
Sbjct: 354 AGASDLLSVRDTLSVLPALADAIEGTELADSPLAEVVSRPDRDAAADLRADLADALAED- 412
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARR-----SFCDTSEAVHNLANKYREELKLP 232
P TQ +G D L D+ R S+ DT LA++ + + L
Sbjct: 413 -------PPKTVTQGGLFQQGYDDELDDLIERHESAKSWLDT------LADREKRDHGLS 459
Query: 233 NLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAA 289
++ + N G+Y+ + K + ++P + Q+ N+ T EL +R + A
Sbjct: 460 HVTVDRNKTDGYYIQV-GKSVADQVPDHYRQIKTLKNSKRFVTEELEEKEREILRLEEAR 518
Query: 290 GECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
G+ E L + + +L + + +D + + H +TRP T
Sbjct: 519 GDLEYE---LFEELRERVARRAELLQDVGRTIAEVDALASLATHAAGNG----WTRPELT 571
Query: 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
+ G L I+ GRHP++E+ DF+PN++ + + +IVTGPNMSGKSTY++Q LI +LA
Sbjct: 572 DAGALDIEAGRHPVVETT-TDFVPNDLRMDDERGFLIVTGPNMSGKSTYMRQAALITLLA 630
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +VPA +T+ VVD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE
Sbjct: 631 QVGSFVPARSATVGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDE 690
Query: 470 LGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
+GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA V +H R+
Sbjct: 691 VGRGTATYDGISIAWAATEYLHNEIRAKTLFATHYHELTTLADHLDRVANVHVAADERDG 750
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ F + DGP YG+ +A++AG+P V++ A + R+ +E K +E
Sbjct: 751 DVTFLRTVVDGPTDR-SYGIHVADLAGVPRPVVDRAADVLDRL--REEKAIE 799
>gi|127512146|ref|YP_001093343.1| DNA mismatch repair protein MutS [Shewanella loihica PV-4]
gi|166232136|sp|A3QC86.1|MUTS_SHELP RecName: Full=DNA mismatch repair protein MutS
gi|126637441|gb|ABO23084.1| DNA mismatch repair protein MutS [Shewanella loihica PV-4]
Length = 855
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 184/627 (29%), Positives = 307/627 (48%), Gaps = 55/627 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + +NLE+ L G+ N +L +L T T G+R+L+ + +PL++ I
Sbjct: 271 LDAATRKNLELTRNLQG---GSDN---TLASVLDNTATPMGSRMLQRWIHEPLRNHNIIR 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D +DEL+ N G + L + K + +++T++ L + +A+
Sbjct: 325 ARHDAIDELLDN-----GYHESLHEQLKALGDI--------ERITAR-LAIRSARPR--- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ AL LP + + L D C + ++ +G+ +E L +
Sbjct: 368 --DFARLRQALALLPEIQQQLAD-------------CNSPHLKALSSHLGDFPEEHALLS 412
Query: 183 RV-----PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
R P + R IK G LD R+ ++ + L + + LK+
Sbjct: 413 RAIVDNPPMLIRDGGV--IKEGYHNELDEWRKLSQGATDYLAELEAREKAATGASTLKVG 470
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N G+Y+ + ++ +P ++ + N EL + S+ G+ +
Sbjct: 471 YNRVHGYYIEVSRRE-SDLVPMSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEK 529
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L A LD+I N FA + +D Y RP T + I+
Sbjct: 530 QLWEELFDLLMPRLHELQAFARAAAELDVITN-FAE--RAEQLD-YHRPELTAQSGIHIE 585
Query: 358 GGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + FI N + ++ A M+IVTGPNM GKSTY++QV LI ++A IG +VP
Sbjct: 586 AGRHPVVERVSQTPFIANPVSLNPARRMLIVTGPNMGGKSTYMRQVALITLMAHIGSFVP 645
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I VDRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 646 AQKAAIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPESLVLMDEIGRGTST 705
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AWS EHL +LK+ T+FA+H L++L NV +H + ++ + F
Sbjct: 706 YDGLSLAWSAAEHLAQNLKSMTLFATHYFELTQLPDQMENVANVHLDAIEHDDTIAFMHA 765
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQM-LYH 594
+++G YGL +A +AG+P+ V++ A+ + ++ + E+ L+ Q+ M +
Sbjct: 766 VQEGAAS-KSYGLQVAALAGVPAKVVQAAKHKLHHLESRD-REEELPELRQAQLSMTMPE 823
Query: 595 AAQRLICLKYSNQDEESIRHALQNLKE 621
++ L L + D + R AL L E
Sbjct: 824 TSKALDRLDTIDPDSLTPRQALDLLYE 850
>gi|350295844|gb|EGZ76821.1| hypothetical protein NEUTE2DRAFT_146538 [Neurospora tetrasperma FGSC
2509]
Length = 1318
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 186/619 (30%), Positives = 320/619 (51%), Gaps = 66/619 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID T+V +LE+++ A + K +LF +L +TKT G RLLR LLQP + E
Sbjct: 578 MGIDRTTVASLELLQNTRRA----TAKNSTLFGILNSTKTPQGHRLLRTTLLQPSTNKEE 633
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPK-ETDRVLCHFCFK------------PKKVT 107
+ R + ++EL +NE+LF L + L + + + +RV+ + P
Sbjct: 634 VIERYESVEELSTNEELFRELRKALEELVRIDFERVIVWISQEQPNPRQPLEEGVPGCTN 693
Query: 108 SKVLDVDNAK--KSQTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEK 163
+L +A+ K++ ++SI++LK L + L +L+ A +S LL I R E
Sbjct: 694 QGLLLPTHAELTKAEQELNSILMLKKYLSGIDALHGILEAAGCKSRLLRWI-RDRFAPEH 752
Query: 164 YASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFC----DTSEAVH 219
+++ + E+I++D +++ P R + +A++ + +L ARRSF D +E
Sbjct: 753 TEPVQRAMEEMIEDDAAYSKKPIELRNNRMWAVRAVRNSVLGKARRSFTALTKDLNEYFD 812
Query: 220 NLANKYREELKL-PNLKLPFNNRQGFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLE 277
L N++ E L NL + N R ++L + D++ ++ P + +Q +G H +
Sbjct: 813 MLDNQFNEVLGTRANLYMDSNRR--YWLRFDYSDVEREIQPQSDVQKGNYGEVSHWKQVS 870
Query: 278 LASLNVRN--------KSAAGECYIRTE-ICLEALVDAIREDVSVLTL------------ 316
+A L + N K E R+ I L+A + ++ D V+ L
Sbjct: 871 IAGLELINGTRDKKHLKCQTTELLQRSRAIQLQADIATMQSDRLVIELKGRLQEHSSLMF 930
Query: 317 -LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNN 375
+++ + LLDM+ SF +T+ Y RP T++ + I RHPI+E+ N ++ N+
Sbjct: 931 DISDAIALLDMLC-SFTQAATTQ---DYVRPIITDS--MVIKQARHPIVEARANHYVAND 984
Query: 376 IFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGT 434
++ ++ ++TG NMSGKST+++ V LI I+AQ+G +VPA F++I + DR+F R+ T
Sbjct: 985 VYSGDQSGRFQVITGGNMSGKSTFIRSVALIQIMAQMGSFVPAQFASISICDRVFARVST 1044
Query: 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK 494
D E+N TF EM+ET +++ + +S+I+MDELGR TS DG A+A + E L+ +K
Sbjct: 1045 DDAPENNLGTFGVEMRETNVILRQATAQSMIIMDELGRGTSPKDGQALAIAIIEKLIKMK 1104
Query: 495 AYTIFASHMENLSELAT-IYP-NVKILHF----YVVIRNNRLDFKFQLKDGPRHVPHYGL 548
FA+H + +L IYP +V +HF V + ++ L GP YG+
Sbjct: 1105 PRVFFATHFTRIPQLLNKIYPRDVLNVHFEGQSQAVGQITQITLPHTLAGGPVQNEDYGI 1164
Query: 549 LLAEVAGLPSTVIETARSI 567
LA LP ++++ A +
Sbjct: 1165 ELARCV-LPGSIVDHAEEV 1182
>gi|422657792|ref|ZP_16720231.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331016401|gb|EGH96457.1| DNA mismatch repair protein MutS [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 859
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 172/590 (29%), Positives = 288/590 (48%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLSILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D + L + ++ + A + +R
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLDAPHLQQLAQTASTYPELADLLQR--------A 413
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
++ P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 414 INDNPPAVIR--DGGVLKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YETLLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRDTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVNNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVITRA--------KEHLQRLETTSLPHEQ 807
>gi|333899521|ref|YP_004473394.1| DNA mismatch repair protein mutS [Pseudomonas fulva 12-X]
gi|333114786|gb|AEF21300.1| DNA mismatch repair protein mutS [Pseudomonas fulva 12-X]
Length = 857
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 172/570 (30%), Positives = 278/570 (48%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T G+RLL L +PL+D +
Sbjct: 268 LDGASRRNLELDVNL------AGGRDNTLQSVVDRCQTAMGSRLLGRWLNRPLRDRAVLE 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 322 ARQESIACLLDRYR-FETLQPQLKEI-GDLERILARIGLR------------NARPR--- 364
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + L + ++ + A + +ID
Sbjct: 365 --DLARLRDALGALPELQQAMAQLDCAHLTALAGTISTYPELAELLATA--IIDNP---- 416
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 417 --PAVIRDGGV--LKTGYDAELDELQSLSENAGQYLMDLETREKARTGLANLKVGYNRVH 472
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + P+ +I+ T EL + SA R + E
Sbjct: 473 GYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKQLYEE 531
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + + L A L LD++ N ++ RP F E + I+ GRHP
Sbjct: 532 LLERLIGHLGPLQDSAAALAELDVLSNLAERALNLD----LNRPRFVEEPCMLIEQGRHP 587
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + +A M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 588 VVEQVLTTPFVANDLKLDDATRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 647
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ DG +
Sbjct: 648 LSMVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRGTSTFDGLS 707
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 708 LAWAAAEQLANLRAYTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 767
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P+ VI AR +R+
Sbjct: 768 SQ-SYGLAVAQLAGVPAPVILRAREHLARL 796
>gi|229520831|ref|ZP_04410253.1| DNA mismatch repair protein MutS [Vibrio cholerae TM 11079-80]
gi|229342064|gb|EEO07060.1| DNA mismatch repair protein MutS [Vibrio cholerae TM 11079-80]
Length = 879
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 174/571 (30%), Positives = 281/571 (49%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 291 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 344
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 345 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 386
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A+ LP L V+ + + L + + + +R I E+
Sbjct: 387 -RDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDGLCDLLER---AIKENP--- 439
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G LD R +E + +L + R+ + LK+ +NN
Sbjct: 440 --PVVIRDGGVIA--DGYSAELDEWRDLANGATEFLEHLEAEERDRHGIDTLKVGYNNVH 495
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 496 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL--- 551
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L LA + LD++ N + + Y RP + + I
Sbjct: 552 --WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIHIQ 605
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 606 GGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 665
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 666 AESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTST 725
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 726 YDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHA 785
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 786 VQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 815
>gi|374703837|ref|ZP_09710707.1| DNA mismatch repair protein MutS [Pseudomonas sp. S9]
Length = 855
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 172/570 (30%), Positives = 281/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L ++ +L ++ +T G+RLL L +PL+D +
Sbjct: 266 LDGASRRNLELDINL------AGGRENTLQSVVDRCQTAMGSRLLSRWLNRPLRDRNILQ 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ E+ F Q K + +R+L + NA+
Sbjct: 320 ARQESITCLL--ERYRFETLQPQLKEIGDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + +S LA++ +V Y + +G+ I ++
Sbjct: 363 --DLARLRDALAALPELQSAMAMLESPHLASLATTVS---TYPDLAALLGKAIIDNP--- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKTGYDAELDELQSLSENAGQYLMDLETREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + P+ +I+ T EL + SA R ++ E
Sbjct: 471 GYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKVLYEE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + +S L A L LD++ N ++ P F + + I+ GRHP
Sbjct: 530 LLEHLITQLSPLQDSASALAELDVLSNLAERALNLN----LNCPRFVDEPCMRINQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLTKPFVANDLNLDDDTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +E+SL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATEQSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAEQLAKLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI AR +R+
Sbjct: 766 SQ-SYGLAVAQLAGVPDAVILRAREHLARL 794
>gi|422320383|ref|ZP_16401444.1| mismatch repair protein [Achromobacter xylosoxidans C54]
gi|317404852|gb|EFV85225.1| mismatch repair protein [Achromobacter xylosoxidans C54]
Length = 884
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 181/605 (29%), Positives = 279/605 (46%), Gaps = 66/605 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+ + L + +LF +L +T G+RLLR L PL+D
Sbjct: 276 LDPVTRRNLELTQTL------SGEDSPTLFSLLDGCRTPMGSRLLRRWLHHPLRDNAPAQ 329
Query: 63 TRLDCLDELMSN----EQLF--FGLSQFLR----KFPKETDRVLCHFCFK---PKKVTSK 109
R + L++ EQ F GL + LR FP + +R+ + P+++ S
Sbjct: 330 ARQQAISTLLAGRMDVEQTFGSAGLLETLRGALNAFP-DIERIAARLALRSVRPRELAS- 387
Query: 110 VLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKD-AQSFLLANIYRSVCENEKYASIR 168
L+ AL ALP L ++ A S L ++ + + A++
Sbjct: 388 -------------------LRDALQALPALRDLVAPMAASPRLNDLVSHLSVDPALAALL 428
Query: 169 KRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREE 228
R A P VA + + G D LD R D + + L + RE
Sbjct: 429 VRA---------IAAEPAVA-IRDGGVLATGFDAELDELRALAADGGDFLVQLEARERER 478
Query: 229 LKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSA 288
+ NL++ FN GFY+ + K K+P + + N T EL + + SA
Sbjct: 479 TGISNLRVEFNRVHGFYIEV-TKGQTAKVPEDYRRRQTLKNAERYITPELKTWEDKVLSA 537
Query: 289 AGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
R + E L+D + E V L+ A L LD + H + P
Sbjct: 538 QDRSLAREKWLFEQLLDVLAEHVRPLSDCAGALAELDTLAALAEHARRHD----WIAPEL 593
Query: 349 TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
+E + ID GRHP++E F PN + A M+++TGPNM GKSTY++QV LIV+L
Sbjct: 594 SEQADIDIDAGRHPVVEQAIERFTPNGCRLDPARRMLLITGPNMGGKSTYMRQVALIVLL 653
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
A+IG +VPA + I +DRIFTR+G D+L STFM EM E A ++ + SL++MD
Sbjct: 654 ARIGSFVPAARARIGRIDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAASTPNSLVLMD 713
Query: 469 ELGRATSSSDGFAIAWS-CCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS+ DG A+AW+ C L +A T+FA+H L+ L P +H
Sbjct: 714 EIGRGTSTYDGLALAWAIACRLLAHNRALTLFATHYFELTRLPAEQPASANVHLAAAESA 773
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
+ F ++++GP YG+ +A+ AG+P+ VI R +E++R+E
Sbjct: 774 GGIVFLHEVREGPASR-SYGIQVAQRAGVPAAVI--------RQATRELERLEAQGAPTP 824
Query: 588 QIQML 592
Q+ +
Sbjct: 825 QLGLF 829
>gi|163749989|ref|ZP_02157233.1| DNA mismatch repair protein [Shewanella benthica KT99]
gi|161330263|gb|EDQ01244.1| DNA mismatch repair protein [Shewanella benthica KT99]
Length = 855
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 183/621 (29%), Positives = 299/621 (48%), Gaps = 53/621 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L ++ +L +L T T G+R+L+ + +PL++ + I
Sbjct: 271 LDAATRRNLELTINLQGG------RENTLSAILDNTTTPMGSRMLQRWIHEPLRNRQQIE 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+RL L EL+ + LF L+ L+ + +R+ + +++ D
Sbjct: 325 SRLGALTELL-DSGLFDTLTPHLKAL-GDIERITARLALR----SARPRDFSR------- 371
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
LK AL LP D Q LL C++ + IGE +E L
Sbjct: 372 ------LKQALSTLP-------DIQQLLLG------CQSPHLKRLASLIGEFPEELALLD 412
Query: 183 RV-----PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
R P + R +K G D LD R ++ + L + + + LK+
Sbjct: 413 RAIIDNPPMLIR--DGGVLKDGYDEELDKWRALSKGATDYLKELEAREKASTGISTLKVG 470
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N G+Y+ + ++ +P ++ + N EL + S+ G+ R +
Sbjct: 471 YNRVHGYYIEVSRRE-SDLVPLSYQRRQTLKNTERYIIAELKEHEEKVLSSQGKALAREK 529
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L A+ LD+I N FA T Y P T+ + I+
Sbjct: 530 QLWEQLFDLLLPKLHALQQFAQGAAELDVISN-FAERAETL---NYRCPTLTDISGIHIE 585
Query: 358 GGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + + FI N + ++ M+IVTGPNM GKSTY++QV LI ++A IG YVP
Sbjct: 586 SGRHPVVEQVSQSPFIANPVTLNSTRKMLIVTGPNMGGKSTYMRQVALITLMAHIGSYVP 645
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I VDRIFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR TS+
Sbjct: 646 AQEAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSQSLVLMDEIGRGTST 705
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AWS E+L ++A T+FA+H L++L + NV+ +H + + + F
Sbjct: 706 YDGLSLAWSAAEYLAEKIEAMTLFATHYFELTQLPELIDNVENVHLDAIEHGDTIVFMHA 765
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHA 595
+++G YGL +A +AG+P+ VI A+ + ++ K + Q ++
Sbjct: 766 VQEGAAS-KSYGLQVAALAGVPARVIAAAKHKLHHLESRDSKGITQESPQQARVFPEPQI 824
Query: 596 AQRLICLKYSNQDEESIRHAL 616
+ L+ N DE S + AL
Sbjct: 825 SPVEEALQSINPDELSPKQAL 845
>gi|331091141|ref|ZP_08339983.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405363|gb|EGG84899.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
2_1_46FAA]
Length = 883
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 186/599 (31%), Positives = 302/599 (50%), Gaps = 79/599 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+++ RNLE+ E L K+ SL +L TKT G R LR+ + QPL + E
Sbjct: 267 MLLDSSTRRNLELCETLRE-----KQKRGSLLWVLDKTKTAMGARTLRSYVEQPLINKED 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
I RLD + EL N + ++L + +R++ ++ P+ +T+
Sbjct: 322 ILARLDAVGELKDNAIAREEIREYLTPV-YDLERLISKITYQSANPRDLTA--------- 371
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
+++L LP + +L D S LL ++YR + E + + I E
Sbjct: 372 -----------FQSSLAMLPHIKYILSDMTSPLLMSLYRELDTLEDLCEL---VQSAIKE 417
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P +A ++ IK G D +D R + + + L + RE+ + NLK+
Sbjct: 418 E------PPLA-MKEGGIIKDGYDAEVDKLRNAKTEGKTWLAELEAEEREKTGIKNLKIK 470
Query: 238 FNNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNN-----IHCSTLELASLNVRNKSAAG 290
+N G+YL + +K++ +P + + N LE L +K A
Sbjct: 471 YNKVFGYYLEVTNSYKEL---VPDYYTRKQTLANAERYIIPRLKELEDTILGAEDKLYAL 527
Query: 291 E----CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
E C IR D I ++V + A+ + +D+ FA + Y RP
Sbjct: 528 EYEIYCKIR---------DKIADEVVRIQKTAKAIAKIDV----FASLALVAERNNYVRP 574
Query: 347 HFTENGPLAIDGGRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVC 403
E G + I GRHP++E I ND FI N+ + + N V I+TGPNM+GKSTY++Q
Sbjct: 575 KINEKGVIDIKNGRHPVVEKMIPNDMFIANDTLLDDKKNRVSIITGPNMAGKSTYMRQTA 634
Query: 404 LIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERS 463
LIV++AQIG +VPA + + +VDRIFTR+G D+L S STFM EM E A +++N + RS
Sbjct: 635 LIVLMAQIGTFVPAESANVGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATNRS 694
Query: 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILH 520
L+++DE+GR TS+ DG +IAW+ EH+ + K A T+FA+H L+EL +V +
Sbjct: 695 LLILDEIGRGTSTFDGLSIAWAVVEHISNAKLLGAKTLFATHYHELTELEGKIDSVN--N 752
Query: 521 FYVVIRNNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ + ++ D F +K G YG+ +A++AG+P +VI A+ I S +++ ++
Sbjct: 753 YCIAVKEKGDDIVFLRKIVKGGADK--SYGIQVAKLAGVPESVILRAKEIVSELSEADI 809
>gi|397773989|ref|YP_006541535.1| DNA mismatch repair protein MutS [Natrinema sp. J7-2]
gi|397683082|gb|AFO57459.1| DNA mismatch repair protein MutS [Natrinema sp. J7-2]
Length = 897
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 166/588 (28%), Positives = 293/588 (49%), Gaps = 53/588 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E + + SLF + T+T G RLL+ L +P + + T
Sbjct: 266 VTLDATTQRNLELTETMQG------ERDGSLFATIDHTETSAGGRLLKEWLQRPRRSLAT 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R + + L + + R ++T + ++ SK A
Sbjct: 320 LEERQESVAALST--------AALARDEIQDT----LGEAYDLARLASK------ATHGS 361
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYAS--IRKRIGEVIDED 178
++ ++ L LP LA ++ + + V ++ A+ +R + + I ED
Sbjct: 362 ADARDLLAVRETLAVLPALADAVESNPDLADSPLSEIVSRPDRDAARNLRDTLADAIAED 421
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P TQ +G D L ++ R E + LA++ + + L ++ +
Sbjct: 422 ------PPSTVTQGELLQQGYDDELDEVIERHEA-IREWLDTLADREKRQYGLSHVTVDR 474
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECY 293
N G+Y+ + G +P + ++ N+ +T EL L + ++
Sbjct: 475 NKTDGYYIQVGKSAADG-VPDHYEEIKTLKNSKRFTTDELEEKEREILRLEDR------- 526
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
R ++ E D +REDV+ L + + V++ A + +R+ +P
Sbjct: 527 -RGDLEYELFAD-LREDVAAQAELLQDVGRALATVDALASLATHAAENRWVQPGLHRGDR 584
Query: 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
L I+ GRHP++E +F+PN++ + E ++VTGPNMSGKSTY++QV IV+LAQ+G
Sbjct: 585 LEIEQGRHPVVEQT-TEFVPNDVRLDEERGFLVVTGPNMSGKSTYMRQVACIVLLAQVGS 643
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +VD IFTR+G +D L STFM EM E + ++ +E SL+++DE+GR
Sbjct: 644 FVPAEAAEIGLVDGIFTRVGALDELAQGRSTFMVEMSELSNILHTATEESLVILDEVGRG 703
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
T++ DG +IAW+ E+L + +KA T+FA+H L+ LA P+V +H R+ + F
Sbjct: 704 TATYDGISIAWAATEYLHNEVKAKTLFATHYHELTGLADTLPHVANVHVAADERDGEVTF 763
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
++DGP YG+ +A++AG+P V++ +R++ R+ +E K +E
Sbjct: 764 LRTVRDGPTDR-SYGIHVADLAGVPDPVVDRSRTVLERL--REEKAIE 808
>gi|293115594|ref|ZP_05792223.2| DNA mismatch repair protein MutS [Butyrivibrio crossotus DSM 2876]
gi|292808993|gb|EFF68198.1| DNA mismatch repair protein MutS [Butyrivibrio crossotus DSM 2876]
Length = 900
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 180/598 (30%), Positives = 303/598 (50%), Gaps = 58/598 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+++ RNLE++E + KK SL +L TKT G RLLR + QPL +
Sbjct: 284 MIIDSSTRRNLELVETMRE-----KQKKGSLLWVLDKTKTAMGARLLRNMIEQPLLIKDD 338
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + E ++N L ++L + +++ ++ + KS
Sbjct: 339 IVARQKAVTEFINNYVDCAELREYLNP------------VYDLERLVGRI-----STKSA 381
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ +I K ++ LP + K+L +S L+ +IY + E S+ + ++DE
Sbjct: 382 SP-RDLIAFKGSIAMLPPIKKLLASFKSSLIKSIYEELDVLEDICSLIE--ASIVDE--- 435
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A + IK G + +D R + D + + NL +E + NLK+ +N
Sbjct: 436 ----PPIA-IKDGGLIKEGYNEEIDRLRHAKTDGKQWLLNLEASEKERTGIKNLKIKYNK 490
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y + + + +P +I+ N +TL+L L SA + +
Sbjct: 491 VFGYYFEVTNS-FKNMVPDDYIRKQTLTNAERFTTLKLKELEEVILSAEDKLFSLEYDLF 549
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ D I +V + A+ + D+ F++ + Y P E G + I+GGR
Sbjct: 550 TEVRDRIAGEVLRIQTTAKAVAKADV----FSNLAIVAMQNNYVCPTINEKGLIEIEGGR 605
Query: 361 HPILESIHND--FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E + ++ F+ N+ + N + I+TGPNM+GKSTY++Q LIV++AQIG Y+PA
Sbjct: 606 HPVVEKMISNGLFVENDTILDNHKNRISIITGPNMAGKSTYMRQTALIVLMAQIGSYIPA 665
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I +VDRIFTR+G D+L S STFM EM E A +++N + SL+++DE+GR TS+
Sbjct: 666 TKANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSDSLLILDEIGRGTSTF 725
Query: 478 DGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG +IAW+ EH+ + L A T+FA+H L+EL +V ++ + ++ D F
Sbjct: 726 DGLSIAWAVVEHISNPKLLGAKTLFATHYHELTELEGQMESVN--NYCIAVKEQGDDIIF 783
Query: 535 Q---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-------KEVKRMEIN 582
+K G YG+ +A++AG+PS+VIE A+ I + + KE+ R+ I+
Sbjct: 784 LRKIVKGGADK--SYGIQVAKLAGVPSSVIERAKEIVAELADNDISAKAKEIARLGIS 839
>gi|431897005|gb|ELK06269.1| MutS protein like protein 4 [Pteropus alecto]
Length = 676
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/278 (42%), Positives = 191/278 (68%), Gaps = 9/278 (3%)
Query: 354 LAIDGGRHPILESIH-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
LAI G HPILE I + NN +I+E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG
Sbjct: 384 LAIKQGWHPILEKISVEKPVANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIG 443
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
Y+PA +S+ R+ ++IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR
Sbjct: 444 SYIPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGR 503
Query: 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD 531
T++ +G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N +
Sbjct: 504 GTNTEEGIGICYAVCEYLLSLKAFTLFATHFLELCNIDVLYPNVENMHFEVQHVKNTSRN 563
Query: 532 -----FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQY 586
+ ++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + +
Sbjct: 564 KEAILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPEM 622
Query: 587 KQIQMLYHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
++ + +YH A RL+ ++Q D +++R L NLK+ +
Sbjct: 623 ERQRAVYHLATRLVQTARNSQLDPDTLRTYLSNLKKKY 660
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 88/152 (57%), Gaps = 13/152 (8%)
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+++ I+++I LK L+ + L LK+ + LL Y S+ E+ ++ I ++I VI++D
Sbjct: 234 AESKITNLIYLKHTLELVDPLKIALKNCNTPLLRAYYGSL-EDNRFGIILEKIKTVINDD 292
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
V + + RTQ+C+A++ I+ LDIARR++ + + + + + E+ LP L+ F
Sbjct: 293 VRYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMIAQLAEKYSLP-LRTSF 351
Query: 239 NNRQGFYL-------SIPHKDIQGKLPSTFIQ 263
++ +GF++ ++P+ +LPS F++
Sbjct: 352 SSARGFFIQMTIDCTALPND----QLPSEFVK 379
>gi|291519454|emb|CBK74675.1| DNA mismatch repair protein MutS [Butyrivibrio fibrisolvens 16/4]
Length = 814
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 182/584 (31%), Positives = 295/584 (50%), Gaps = 51/584 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++ RNLE+ E + K+ SL +L TKT G R L++ + QPL ++
Sbjct: 212 MLLDNSTRRNLELTETMRD-----KQKRGSLLWVLDKTKTAMGARQLKSFVEQPLLSVDE 266
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D + EL NE L +E R + +++ +K+ + +
Sbjct: 267 IIRRQDAISEL--NESLI----------DREELREYLSSVYDLERLITKI--TYQSANPR 312
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
LI+ K ++ L + +L LL + ++ + + + I IDE+
Sbjct: 313 DLIA----FKQSIGMLSPIKTLLASFHCHLLDDTNANI---DDMKDLYELIDAAIDEEP- 364
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +R IK G + +D RR+ D + + L K R++ + NLK+ FN
Sbjct: 365 ----PISSRDGDI--IKTGFNEEVDRLRRAKVDGKQWLAELEAKERDKTGIKNLKIKFNK 418
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
GFYL + +KD+ +P +++ N T EL L A
Sbjct: 419 VFGFYLEVTNSYKDL---VPDYYVRKQTLANAERYYTPELKELEDSILGAEDRLNTLEYE 475
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ + D I +V + + A+ + LLD ++ S A ++ K + Y RP G + I
Sbjct: 476 YFKTVRDTIASNVDRIQITAKAIALLDAMI-SLA-VVAEK--NHYVRPIIDNRGIIDIKD 531
Query: 359 GRHPILESIHN--DFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + N FI N+ + ++ + I+TGPNM+GKSTY++QV LIV++AQIG +V
Sbjct: 532 GRHPVVEQMINADQFISNDCQLDLDSRTIAIITGPNMAGKSTYMRQVALIVLMAQIGSFV 591
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVDRIFTR+G D+L + STFM EM E A ++ N + +SL+++DE+GR TS
Sbjct: 592 PASSAQIGVVDRIFTRVGASDDLSTGQSTFMVEMNEVANILHNATNKSLLILDEIGRGTS 651
Query: 476 SSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFY-VVIRNNRLDFK 533
+ DG +IAWS EH+ + A T+FA+H L+EL +K +H Y + ++ D
Sbjct: 652 TYDGLSIAWSVVEHIAYKIGAKTLFATHYHELTELEG---QIKGVHNYCIAVQELGEDII 708
Query: 534 FQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F K P YG+ +A +AGLP V+ AR+I + + + ++
Sbjct: 709 FLRKIIPGGADQSYGIQVARLAGLPEEVLSRARTIVNSLNENDI 752
>gi|425897835|ref|ZP_18874426.1| DNA mismatch repair protein MutS [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397892101|gb|EJL08579.1| DNA mismatch repair protein MutS [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 859
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 285/570 (50%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D++ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLKVLQ 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + F L L++ + +R+L + NA+
Sbjct: 324 ARQTSIGCLLDGYR-FERLQPQLKEI-GDIERILARIGLR------------NARPR--- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L+ + + + A++ ++ +ID
Sbjct: 367 --DLARLRDALAALPELQVAMTELEAEHLSQLAVTTSTYPELAALLEKA--IIDNP---- 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 --PAVIRDGGV--LKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYNRIH 474
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P+ +I+ T EL + + SA R ++ EA
Sbjct: 475 GYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYEA 533
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + + L A L LD++ N ++ P F + I GRHP
Sbjct: 534 LLETLIGHLPPLQDTAGALAELDVLSNLAERALNLD----LNCPRFVSEPCMRITQGRHP 589
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 590 VVEQVLTTPFVANDLSLDDQTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 649
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ DG +
Sbjct: 650 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLS 709
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 710 LAWAAAERLAQLRAYTLFATHYFELTVLPENEPLVANVHLNATEHNERIVFLHHVLPGPA 769
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+PS VI AR SR+
Sbjct: 770 SQ-SYGLAVAQLAGVPSDVIVRAREHLSRL 798
>gi|359784997|ref|ZP_09288158.1| DNA mismatch repair protein MutS [Halomonas sp. GFAJ-1]
gi|359297692|gb|EHK61919.1| DNA mismatch repair protein MutS [Halomonas sp. GFAJ-1]
Length = 859
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 180/626 (28%), Positives = 295/626 (47%), Gaps = 55/626 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S RNLEI L N +L +L T T G+RLL+ L +PL+ + +
Sbjct: 267 IDAASRRNLEIDINL------GGNSDNTLASVLDTCATAMGSRLLKRWLNRPLRQRDIVE 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCH---FCFKPKKVTSKVLDVDNAKKS 119
R + L+S + + L L + +R+L + +P+ +
Sbjct: 321 GRQAGV-ALLSIDAAYMALRDTLSDV-GDVERILGRVALYSARPRDLAR----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ AL LP L ++L + + + + Y + + + E+
Sbjct: 368 ---------LRDALVTLPELEQLLAEVDTGSALDSLKPHIR--PYPEMADTLTRALVENP 416
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R A G D LD R + E + L + RE L NLK+ +N
Sbjct: 417 -----PVVIRDGGVIA--NGFDAELDEHRGMAENAGEYLVQLELRERERTGLANLKVGYN 469
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P Q + P+ +I+ N EL + SA R +
Sbjct: 470 RVHGYFIELPRSQAQ-QAPADYIRRQTLKNAERFIIPELKEFEDKALSAKSRALTREKWL 528
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L+ + + L + L LD++ +FA + RP E ++I G
Sbjct: 529 YERLMGELNALLHALQSTSRALAELDVLC-AFAERAEAL---NWVRPQLVEATGISISAG 584
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + + F+PN++ +S +M+I+TGPNM GKSTY++Q LI +LA G +VPA
Sbjct: 585 RHPVVEQVSDKPFVPNDVTLSPDQHMLIITGPNMGGKSTYMRQTALIALLAHSGSFVPAD 644
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G+ D+L STFM EM ETA ++ N +E SL++MDE+GR TS+ D
Sbjct: 645 AAEIGPIDRIFTRIGSSDDLAGGRSTFMVEMTETANILHNATEHSLVLMDEIGRGTSTFD 704
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ EHL + +A T+FA+H ++ L V +H + + F +++
Sbjct: 705 GLSLAWASAEHLATARALTLFATHYFEMTSLPEQANGVANIHLTATEHGDSIVFMHRIEA 764
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQM------L 592
GP YGL +A++AG+P+ VI AR + +++V + + + Q L
Sbjct: 765 GPAS-QSYGLQVAQLAGVPTPVISRAREKLIALEQRDVDQQQRRAVSAGSEQGVPLQNDL 823
Query: 593 YHAAQRLI--CLKYSNQDEESIRHAL 616
+ +A + LK ++ D+ S R AL
Sbjct: 824 FASAPHPVVEALKKADVDDLSPREAL 849
>gi|209525557|ref|ZP_03274096.1| DNA mismatch repair protein MutS [Arthrospira maxima CS-328]
gi|376001977|ref|ZP_09779829.1| DNA methyl-directed mismatch repair protein MutS [Arthrospira sp.
PCC 8005]
gi|423062134|ref|ZP_17050924.1| DNA mismatch repair protein MutS [Arthrospira platensis C1]
gi|209494056|gb|EDZ94372.1| DNA mismatch repair protein MutS [Arthrospira maxima CS-328]
gi|375329643|emb|CCE15582.1| DNA methyl-directed mismatch repair protein MutS [Arthrospira sp.
PCC 8005]
gi|406716042|gb|EKD11193.1| DNA mismatch repair protein MutS [Arthrospira platensis C1]
Length = 883
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 180/589 (30%), Positives = 285/589 (48%), Gaps = 58/589 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + SL + T T G R LR LLQPL I+ I
Sbjct: 302 LDYQTRRNLEITQTIRDGTL-----QGSLLWAIDQTSTAMGARALRRWLLQPLLSIKGIC 356
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLD-VDNAKKSQT 121
+R D + EL++N +L L Q LRK + +++T + + NAK
Sbjct: 357 SRYDTIQELINNAELRQDLQQLLRKI------------YDLERLTGRAANGTANAK---- 400
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
++ L +L LP LA + K A+S L + E+ A RK +++ L+
Sbjct: 401 ---DLVSLADSLSKLPQLAALAKSAKSPYLKALQNVPPLLEELA--RKINSYLVESPPLY 455
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
+ + IK G+D LD + + + + NL + RE +P LK+ FN
Sbjct: 456 LK--------EGGLIKPGVDPQLDQMQAGAAEDQQWIANLEIQERERTGIPTLKVGFNKT 507
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+SI + + P +I+ N T EL R +A +
Sbjct: 508 FGYYISI-TRSKSDQAPDDYIRKQTLTNEERYITPELKEREARILTAKEDLNQLEYEIFA 566
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
L D + E ++ ++ + +D++ + Y RP L I GRH
Sbjct: 567 RLRDEVGEHTDLIREISRAIAAIDVLCGLAEIAV----YQGYCRPEIVGGRELRIIEGRH 622
Query: 362 PILES--IHNDFIPN--------------NIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405
P++E F+PN +I +++I+TGPN SGKS YL+Q+ LI
Sbjct: 623 PVVEKSLPAGFFVPNTAQLGSPEVTLPTADISPPSHPDLIILTGPNASGKSCYLRQIGLI 682
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
++AQIG +VPA + + + DRIFTR+G VD+L + STFM EM ETA ++ + + +SL+
Sbjct: 683 QLMAQIGSFVPATSAKLSICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATPKSLV 742
Query: 466 VMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVV 524
++DE+GR T++ DG +IAWS E+L ++KA TIFA+H L+ELA+I NV V
Sbjct: 743 LLDEIGRGTATFDGLSIAWSVAEYLATTIKARTIFATHYHELNELASILDNVANYQVTVK 802
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++ F Q++ G YG+ +AGLP VI+ A+ + +I K
Sbjct: 803 ELPDKIIFLHQVQPGGAD-KSYGIEAGRLAGLPDVVIKRAKQVMRQIEK 850
>gi|422305945|ref|ZP_16393132.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1035(8)]
gi|408627846|gb|EKL00639.1| DNA mismatch repair protein MutS [Vibrio cholerae CP1035(8)]
Length = 861
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 174/571 (30%), Positives = 280/571 (49%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 273 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 326
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 327 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 368
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A+ LP L V+ + + L + + + +R I E+
Sbjct: 369 -RDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDGLCDLLER---AIKENP--- 421
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 422 --PVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVH 477
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 478 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL--- 533
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L LA + LD++ N + + Y RP + + I
Sbjct: 534 --WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQKAGIHIQ 587
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 588 GGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 647
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 648 AESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTST 707
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 708 YDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHA 767
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 768 VQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 797
>gi|115396858|ref|XP_001214068.1| hypothetical protein ATEG_04890 [Aspergillus terreus NIH2624]
gi|114193637|gb|EAU35337.1| hypothetical protein ATEG_04890 [Aspergillus terreus NIH2624]
Length = 624
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 264/472 (55%), Gaps = 12/472 (2%)
Query: 157 SVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSE 216
S+C + ++ I ++E V + P R Q+ + ++ G++ LLD+AR+++ + +
Sbjct: 92 SICAPASHRAVEDMIETTLNEHVAYQTKPLDLRNQRIYCVRAGVNSLLDVARQTYKEANM 151
Query: 217 AVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTL 276
L +K +E + L L ++ + +Y+SI +I LP+ FI V + N I C TL
Sbjct: 152 DATELVSKLQETHDI-TLDLKYDTARQYYISISAAEIATTLPNVFINVYRKKNRIECQTL 210
Query: 277 ELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTIS 336
+L LN + A E ++ ++ L+ ++ +S L ++E + LLDM+ +FAH S
Sbjct: 211 DLVKLNQKIVDAHNEVLNMSDQTIQDLIASVCLSISHLFKVSEAIALLDMLA-AFAHLAS 269
Query: 337 TKPVDRYTRPHFTENGPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGK 395
Y RP T+ LA+ RHPI E IH F+PN+ + ++ + I+TG NMSGK
Sbjct: 270 AHD---YIRPELTDT--LALRSARHPIREKIHTKKFVPNDAYATDTSRFQIITGCNMSGK 324
Query: 396 STYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFV 455
STY++ + L ++AQ G +VPA ++++R+ ++F R+ T D+L +N STF EM++ A +
Sbjct: 325 STYIRTIALTTVMAQAGSFVPAAYASLRIASQLFARVSTADDLAANVSTFAAEMRDMARI 384
Query: 456 MQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPN 515
++ + R+L+++DEL R TS++DG AIA + E L+ +A F +H +L + +
Sbjct: 385 LRALDPRALVIVDELARGTSTTDGLAIALALAEALIESRARVWFVTHFHDLVAILSERAG 444
Query: 516 VKILHFYVVIRNN--RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
V LH + + ++ +++ +GP YGL LA++ LP+ V++TA+++++++ +
Sbjct: 445 VVALHLAADLAPDASKMTMLYRVAEGPDTTRFYGLALAKLVDLPAAVLDTAQAVSAQMNE 504
Query: 574 --KEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESF 623
+ + ++ ++ ++L+ + +N +++R L+ L++ F
Sbjct: 505 LVRRRQSRSRAAAVARKRNLILALREQLVQARDANMSGDALRGWLRRLQDEF 556
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M+ID +++ +LE+I+ L + K SLF ++ T T G+RLLRAN+LQP +
Sbjct: 1 MSIDLSTIVSLELIQNLQN-----PKSKESLFGLMNATLTPMGSRLLRANILQPSTEESK 55
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFC 100
+ R D +++L + E++F + Q L+ F + D+ L C
Sbjct: 56 LLARYDAVEDLSTKEEMFLSVRQALKGFV-DADKALSSIC 94
>gi|303233668|ref|ZP_07320322.1| DNA mismatch repair protein MutS [Finegoldia magna BVS033A4]
gi|302495102|gb|EFL54854.1| DNA mismatch repair protein MutS [Finegoldia magna BVS033A4]
Length = 856
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 181/585 (30%), Positives = 304/585 (51%), Gaps = 52/585 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ SV NLEI + L+ T++K SLF +L TKT G+RLL + L +PL D E
Sbjct: 257 MEIDSNSVINLEIQKNLY-----TNSKNGSLFGVLNHTKTSMGSRLLHSYLERPLMDKEE 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + ++E+ + +L L L + DR+L +K NAK
Sbjct: 312 ILIRQNRVEEIFEDYELLVNLENCLDGIY-DLDRLLAKLSYKSA----------NAK--- 357
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID-EDV 179
+I LK +++ +P L +L C + I +++ ++ D D+
Sbjct: 358 ----DLIALKVSIEKIPHLKNLLN--------------CNKKNIQLIGEKLDDLRDIYDL 399
Query: 180 LHARV---PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
++ + P V T+ IK LD R + + + ++ L + NLK+
Sbjct: 400 INKSIVDDPPVILTEGNL-IKPNFSNELDQLRYNRVNGKNELVEYEMSEKDRLGIKNLKI 458
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
FN + G+++ + ++ K+ + + N+ T EL ++ + + E +
Sbjct: 459 VFNKKLGYFIDVTKSNLN-KVGEDYEKRQTLTNSSRFKTKELEAIESKILDSEDEIFELE 517
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
E + I E++S + A+++ ++D + NS A ++ Y +P G + +
Sbjct: 518 YKIFEDIRKIILENLSRIKKSADLIAIID-VSNSLAKC---AYLNNYIKPDINTYGLIDV 573
Query: 357 DGGRHPILE-SI-HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGC 413
RHPI+E S+ ++FI N+I I N + ++TGPNMSGKSTYL+QV LI IL QIG
Sbjct: 574 LESRHPIVELSVGQSEFITNDILIGSGKNDIQLITGPNMSGKSTYLRQVALICILNQIGS 633
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +VD+IFTR+G+ DNL STFM EMKE + +++ + SL+V+DE+GR
Sbjct: 634 FVPATKANISIVDKIFTRIGSSDNLFKGESTFMVEMKEMSNIIKYATSNSLLVLDEIGRG 693
Query: 474 TSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+ E++ ++KA T+FA+H L+EL N+ + + N+ + F
Sbjct: 694 TSTFDGLSLAWAIVEYISKNIKAKTLFATHYHELTELEKKLDNLINMKVDIKETNDSIIF 753
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
++ G YG+ +AE+AG+P T+I+ A+SI I K++ K
Sbjct: 754 LRKITRGSTD-KSYGIEVAELAGMPKTLIKRAKSILKEIDKEDTK 797
>gi|420143114|ref|ZP_14650617.1| DNA mismatch repair protein mutS [Lactococcus garvieae IPLA 31405]
gi|391856919|gb|EIT67453.1| DNA mismatch repair protein mutS [Lactococcus garvieae IPLA 31405]
Length = 835
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 192/621 (30%), Positives = 308/621 (49%), Gaps = 70/621 (11%)
Query: 19 SALWGTSNKKR-----SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMS 73
S+L T+NK+ +L+ +L TKT GTRLLR+ + +PL + IN R D + +
Sbjct: 252 SSLELTANKREGKKHGTLYWLLDETKTAMGTRLLRSWVDRPLISADAINKRADVVQLFVD 311
Query: 74 NEQLFFGLSQFLR--KFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKT 131
N FF + + K + +R+ F KVL VD + L+
Sbjct: 312 N---FFERADLIEALKGVYDLERLASRVSF------GKVLPVD-----------YLQLEN 351
Query: 132 ALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVIDEDVLHARVPFVART 190
+L +P + VL + +L + + E E A IR+ I E + V
Sbjct: 352 SLSNVPGIKNVLLAMNNPVLEPLISQLDEIPELIALIRQAIDESAQRVITEGGV------ 405
Query: 191 QQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPH 250
IK G + LD R + + + + L K + + L++ FN + G+Y I
Sbjct: 406 -----IKSGYNAQLDKYREALTNGTSWIAELEAKEKANTGISTLRIDFNRKDGYYFHITQ 460
Query: 251 KDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGE----CYIRTEICLE 301
+ G +P F + N+ + ELA L R KS+ E +RTE
Sbjct: 461 SQL-GSVPDHFYRKATLKNSERFGSKELAEIEEIMLEAREKSSVLEYDLFAQVRTETG-- 517
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
+ +S L LA+ + +D + S A T++ K +YTRP FT + I GRH
Sbjct: 518 -------QYISRLQKLAKAIASIDCL-QSLA-TVAEKY--QYTRPIFTLERKVNIVKGRH 566
Query: 362 PILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
P++ES+ +++PN+I + + ++TGPNMSGKSTY++Q +IVI+AQIG +VPA
Sbjct: 567 PVVESVLGAQEYVPNDIKLPNQTAIQLITGPNMSGKSTYMRQFAMIVIMAQIGSFVPAEL 626
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ + + D IFTR+G DNL S STFM EM E +Q+ + SLI+ DELGR T++ DG
Sbjct: 627 AELPIFDAIFTRIGASDNLISGESTFMVEMMEANHAIQHATPHSLIIFDELGRGTATYDG 686
Query: 480 FAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
A+A S E++ ++ A T+FA+H L+ELA ++ +H + + + F ++ +
Sbjct: 687 MALAQSIIEYIHDNIHAKTLFATHYHELTELADSLEELENVHVATLEKGGDVTFLHKITE 746
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAA-- 596
GP YG+ +A++AGLP+ ++E A I ++ K V + ++ +Q+ +
Sbjct: 747 GPAD-KSYGIHVAKIAGLPTKLLERADIILQKLENKPVMS-KAPVVEKEQLSLFTFEDNH 804
Query: 597 QRLIC-LKYSNQDEESIRHAL 616
Q LI LK +N D + R AL
Sbjct: 805 QELIERLKETNVDNMTAREAL 825
>gi|229530349|ref|ZP_04419737.1| DNA mismatch repair protein MutS [Vibrio cholerae 12129(1)]
gi|229332122|gb|EEN97610.1| DNA mismatch repair protein MutS [Vibrio cholerae 12129(1)]
Length = 886
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 298 LDAATRRNLELT---HNLSGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 351
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 352 QRLDAITEL--KETALYGELHPVLKQIGDIERLLARLALRSARP---------------- 393
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 394 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MDELCDLLERAI 442
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 443 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 500
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 501 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 558
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 559 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 610
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 611 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 670
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 671 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGT 730
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 731 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 790
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 791 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 822
>gi|414079517|ref|YP_007000941.1| DNA mismatch repair protein MutS [Anabaena sp. 90]
gi|413972796|gb|AFW96884.1| DNA mismatch repair protein MutS [Anabaena sp. 90]
Length = 862
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 174/592 (29%), Positives = 289/592 (48%), Gaps = 62/592 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + SL L T T G+R LR LLQPL +I+ I
Sbjct: 300 VDHQTRRNLEITQTVRDGTF-----HGSLLWALDRTSTAMGSRALRRWLLQPLLEIKGIK 354
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+R D + EL+ N L L L++ + +++T + A +
Sbjct: 355 SRQDTIQELVENTPLRQDLRHLLKQI------------YDLERLTVR------AASGRAN 396
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L + LP L+++++DA+S L + + E+ A + LHA
Sbjct: 397 ARDLVALADSFSRLPELSRLVEDARSPFLKALQKVPPSLEELA------------EKLHA 444
Query: 183 RVPFVART--QQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ T ++ I+ GI+ LLD + + + + NL R +P LK+ FN
Sbjct: 445 HIVESPPTHLKEGGLIRAGINPLLDERKATVESDQQWIANLEVDERTRTGIPTLKVGFNK 504
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+SI ++ ++P +I+ N T +L R +A +
Sbjct: 505 TFGYYISI-SRNKSDQVPDNYIRKQTLTNEERYITPDLKEREARILTARDDLNQLEYQIF 563
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+AL D + ++ +A + D++ + Y RP + + GR
Sbjct: 564 DALRDEVGSHAEIIRNIARAVAASDVLCGLAELAVHQG----YCRPEMLTGREINVIDGR 619
Query: 361 HPILES--IHNDFIPNNIFISEAA----------------NMVIVTGPNMSGKSTYLQQV 402
HP++E F+PN+ + + + ++VI+TGPN SGKS YL+QV
Sbjct: 620 HPVVEQSLPAGFFVPNSTKLGQLSVVSGQLSVETTIDNNPDLVILTGPNASGKSCYLRQV 679
Query: 403 CLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSER 462
LI ++AQ+G +VPA F+ + V DRIFTR+G VD+L + STFM EM ETA ++ + + R
Sbjct: 680 GLIQLMAQVGSFVPAKFAKLGVCDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATLR 739
Query: 463 SLIVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHF 521
SL+++DE+GR T++ DG +IAW+ E+L + +K+ TIFA+H L+ELATI NV
Sbjct: 740 SLVLLDEIGRGTATFDGLSIAWAVAEYLAVEIKSRTIFATHYHELNELATIISNVANYQV 799
Query: 522 YVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
V +++ F Q++ G YG+ +AGLP+ VI+ A+ + +I K
Sbjct: 800 TVKELPDQIIFLHQVQPGGAD-KSYGIEAGRLAGLPTVVIQRAKQVMGQIEK 850
>gi|402698770|ref|ZP_10846749.1| DNA mismatch repair protein MutS [Pseudomonas fragi A22]
Length = 859
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 172/570 (30%), Positives = 282/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTSMGSRLLTRWLNRPLRDLPVLL 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + F L L++ + +R+L + NA+
Sbjct: 324 ARQSSITCLLDGYR-FEKLQPQLKEI-GDLERILARIGLR------------NARPR--- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + ++ L + S + A++ E ++
Sbjct: 367 --DLARLRDALGALPELQDAMIGLEAPHLQQLATSTGTYPELAALL--------EKAIND 416
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 417 NPPAVIRDGGV--LKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYNRVH 474
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P+ +I+ T EL + + SA R ++ EA
Sbjct: 475 GYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYEA 533
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ P F + + I+ GRHP
Sbjct: 534 LLETLIGELPPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVDEPCMRINQGRHP 589
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 590 VVEQVLTTPFVANDLALDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 649
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ DG +
Sbjct: 650 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLS 709
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 710 LAWAAAERLAQLRAYTLFATHYFELTVLPENEPLVANVHLSATEHNERIVFLHHVLPGPA 769
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI AR SR+
Sbjct: 770 SQ-SYGLAVAQLAGVPPEVITRAREHLSRL 798
>gi|189347201|ref|YP_001943730.1| DNA mismatch repair protein MutS [Chlorobium limicola DSM 245]
gi|254766620|sp|B3EEE1.1|MUTS_CHLL2 RecName: Full=DNA mismatch repair protein MutS
gi|189341348|gb|ACD90751.1| DNA mismatch repair protein MutS [Chlorobium limicola DSM 245]
Length = 871
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 183/606 (30%), Positives = 296/606 (48%), Gaps = 65/606 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLEII + G+ N SL ++ T+ G RLLR L +PL
Sbjct: 272 MTLDLQTKRNLEIISSMQD---GSING--SLLQVIDRTRNPMGARLLRQWLQRPLLRAAD 326
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD +DEL +K + V C ++ D++ A
Sbjct: 327 ITMRLDAVDEL--------------KKMKPFRESVCCDL--------GQISDLERALARI 364
Query: 121 TLISSII----LLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
+ +I L +AL +PLL + +D S L +I ++ ++ I +D
Sbjct: 365 ATLRAIPREVRQLGSALAVIPLLKQSFQDTVSKRLCSIADALMPLPDLVAM---IESAVD 421
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
+ A + I+ G LD R++ E + + + RE + +LK+
Sbjct: 422 PEA-------GASMRDGGYIRKGYHQELDDLRQTASTAKERLLEIQQEERERTAIGSLKV 474
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTF--IQVVKHGNNIHCSTL---ELASLNVRNKSAAGE 291
FN G+Y+ I + + K+P + Q + + L E LN +S E
Sbjct: 475 QFNRVFGYYIEISKAN-RDKVPPYYEKKQTLVNAERFTIPALKEYEEKILNAEERSLVLE 533
Query: 292 CYIRTEIC--LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
+ +C + + I+E+ + L+AE+ CL V + + Y +P
Sbjct: 534 QQLFQALCCRIAGHAEVIQENAA---LIAEIDCLAAYAVCADEYG--------YCKPLIA 582
Query: 350 ENGPLAIDGGRHPILESI---HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406
E+ L I GRHP+LE I +I N+ + M+++TGPNM+GKS+YL+Q LIV
Sbjct: 583 EHTGLRILNGRHPVLERILPADEPYIANDALFDDRQKMLMITGPNMAGKSSYLRQTGLIV 642
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
+LAQ GC+VPA + I VVDRIFTR+G DNL S STF+ EM E A ++ N + +SL++
Sbjct: 643 LLAQAGCFVPAEQAEIGVVDRIFTRVGASDNLASGESTFLVEMNEAADILNNATAKSLLL 702
Query: 467 MDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
+DE+GR TS+ DG AIAWS CE++ + A T+FA+H L+EL + P V + V+
Sbjct: 703 LDEIGRGTSTYDGLAIAWSMCEYIHRQIGARTLFATHYHELAELEGLLPGVVNYNASVLE 762
Query: 526 RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ 585
+R+ F ++ G YG+ +A ++G+PS VI A++I + + K+++ + L
Sbjct: 763 SGDRVIFLRKIVRGASD-NSYGIEVARMSGMPSAVITRAKAILAGMEKRDIATPSSSGLS 821
Query: 586 YKQIQM 591
+ +Q+
Sbjct: 822 LQSMQI 827
>gi|424921686|ref|ZP_18345047.1| MutS [Pseudomonas fluorescens R124]
gi|404302846|gb|EJZ56808.1| MutS [Pseudomonas fluorescens R124]
Length = 860
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 175/573 (30%), Positives = 281/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 323
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + E+L L + + +R+L + NA+
Sbjct: 324 ARQTSITCLLDGYRFEKLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + D ++ L + + + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPQLQVAMTDLEAPHLQRLATTTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 531 YEALLEDLISQLPPLQDTAGALAELDVLSNLAERALNLD----LNCPRFVSEPCMRITQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAHLRAYTLFATHYFELTVLPEAEPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVIVRAREHLSRL 798
>gi|398965115|ref|ZP_10680781.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM30]
gi|398147569|gb|EJM36273.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM30]
Length = 860
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 175/573 (30%), Positives = 281/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 323
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + E+L L + + +R+L + NA+
Sbjct: 324 ARQTSITCLLDGYRFEKLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + D ++ L + + + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPQLQVAMTDLEAPHLQRLATTTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 531 YEALLEDLISQLPPLQDTAGALAELDVLSNLAERALNLD----LNCPRFVSEPCMRITQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAHLRAYTLFATHYFELTVLPEAEPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVIVRAREHLSRL 798
>gi|238921110|ref|YP_002934625.1| DNA mismatch repair protein MutS, putative [Edwardsiella ictaluri
93-146]
gi|259511166|sp|C5BGI4.1|MUTS_EDWI9 RecName: Full=DNA mismatch repair protein MutS
gi|238870679|gb|ACR70390.1| DNA mismatch repair protein MutS, putative [Edwardsiella ictaluri
93-146]
Length = 852
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 171/567 (30%), Positives = 272/567 (47%), Gaps = 49/567 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L ++ +L +L + T G+R+L+ L P++D + +
Sbjct: 269 MDAATRRNLELTQNL------AGGQENTLAAVLDASVTAMGSRMLKRWLHMPIRDRQALQ 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D ++ L+ L L LR+ + +R+L + +
Sbjct: 323 RRQDAIEALLP---LIDDLQPLLRQV-GDLERILARLALRSARP---------------- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ ++ A LP L +L + S LA + R + + +R L
Sbjct: 363 -RDLARMRVAFQQLPTLQTLLGERGSEALAPLARQAGRFDALCELLER--------ALVE 413
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G LD R S+ + L + RE+L L LK+ FN
Sbjct: 414 TPPVLVRDGGVIA--SGYHAELDEWRALADGASDYLDRLEVREREKLGLDTLKVGFNAVH 471
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + +P +++ N EL + ++ G+ + +
Sbjct: 472 GYYIQV-SRGQSHLVPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYDE 530
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRY--TRPHFTENGPLAIDGGR 360
L D + ++ L A L LD +++ A DRY RP +E + ID GR
Sbjct: 531 LFDLLLPHLAALQQSATALAELD-VLSGLAER-----ADRYGYVRPQLSERTGINIDEGR 584
Query: 361 HPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + FI N + +S A M+++TGPNM GKSTY++Q LIV++A IG +VPA
Sbjct: 585 HPVVEQVLREPFIANPLTLSGARRMLVITGPNMGGKSTYMRQAALIVLMAHIGSFVPAQR 644
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ I VDRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ DG
Sbjct: 645 AVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDEIGRGTSTYDG 704
Query: 480 FAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
++AW+C E L S +KA T+FA+H L+ L V +H + + F ++D
Sbjct: 705 LSLAWACAESLASRIKAMTLFATHYFELTTLPEKLEGVYNVHLDALEHGETIAFMHSVQD 764
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETAR 565
G YGL +A +AG+P VI+ AR
Sbjct: 765 GAAS-KSYGLAVAALAGVPREVIKRAR 790
>gi|448341523|ref|ZP_21530482.1| DNA mismatch repair protein MutS [Natrinema gari JCM 14663]
gi|445627637|gb|ELY80956.1| DNA mismatch repair protein MutS [Natrinema gari JCM 14663]
Length = 897
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 166/588 (28%), Positives = 292/588 (49%), Gaps = 53/588 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E + + SLF + T+T G RLL+ L +P + + T
Sbjct: 266 VTLDATTQRNLELTETMQG------ERDGSLFATIDHTETSAGGRLLKEWLQRPRRSLAT 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R + + L + + R ++T + ++ SK A
Sbjct: 320 LEERQESVAALST--------AALARDEIQDT----LGEAYDLARLASK------ATHGS 361
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYAS--IRKRIGEVIDED 178
++ ++ L LP LA ++ + + V ++ A+ +R + + I ED
Sbjct: 362 ADARDLLAVRETLAVLPALADAVESNPDLADSPLSEIVARPDRDAARNLRDTLADAIAED 421
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P TQ +G D L ++ R E + LA++ + + L ++ +
Sbjct: 422 ------PPSTVTQGELLQQGYDDELDEVIERHEA-IREWLDTLADREKRQYGLSHVTVDR 474
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECY 293
N G+Y+ + G +P + ++ N+ +T EL L + ++
Sbjct: 475 NKTDGYYIQVGKSAADG-VPDHYEEIKTLKNSKRFTTDELEEKEREILRLEDR------- 526
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
R ++ E D +REDV+ L + + V++ A + +R+ +P
Sbjct: 527 -RGDLEYELFAD-LREDVAAQAELLQDVGRALATVDALASLATHAAENRWVQPALHRGNR 584
Query: 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
L I+ GRHP++E +F+PN++ + E ++VTGPNMSGKSTY++QV IV+LAQ+G
Sbjct: 585 LEIEQGRHPVVEQT-TEFVPNDVRLDEERGFLVVTGPNMSGKSTYMRQVACIVLLAQVGS 643
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +VD IFTR+G +D L STFM EM E + ++ +E SL+++DE+GR
Sbjct: 644 FVPAEAAEIGLVDGIFTRVGALDELAQGRSTFMVEMSELSNILHTATEESLVILDEVGRG 703
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
T++ DG +IAW+ E+L + +KA T+FA+H L+ LA P V +H R+ + F
Sbjct: 704 TATYDGISIAWAATEYLHNEVKAKTLFATHYHELTGLADTLPRVANVHVAADERDGEVTF 763
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
++DGP YG+ +A++AG+P V++ +R++ R+ +E K +E
Sbjct: 764 LRTVRDGPTDR-SYGIHVADLAGVPDPVVDRSRTVLERL--REEKAIE 808
>gi|7404405|sp|P73769.2|MUTS_SYNY3 RecName: Full=DNA mismatch repair protein MutS
Length = 878
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 181/582 (31%), Positives = 293/582 (50%), Gaps = 54/582 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + SL L T T G+R LR LLQPL D++ I
Sbjct: 302 LDHQTRRNLEINQTVRDGSF-----HGSLLWALDRTSTTMGSRALRRWLLQPLLDLKGIQ 356
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKSQT 121
R D + EL + L L Q LR+ + +++T ++ + +A+
Sbjct: 357 ARQDTIQELYHHPALRQDLRQLLRQI------------YDLERLTGRIGANTASARDVYG 404
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
L SS++ L LA++ ++ S L + E E+ + + +++ LH
Sbjct: 405 LASSLVRLTD-------LAELAQEGHSPYLKALQTVPPELEELG--KYVLAHIVENPPLH 455
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
R + I+ G++ LD R+S D ++ + NL RE+ + NLK+ +N
Sbjct: 456 IR--------EGNLIRSGVNPTLDEMRQSLEDDNQWLANLEVTEREKTGIANLKVGYNKA 507
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC-YIRTEICL 300
G+YLS+P + + P +I+ N T EL R +A + + EI
Sbjct: 508 FGYYLSLPRSKSE-QAPDNYIRKQTLVNEERYITPELKERETRILTAQADLNQLEYEIFT 566
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT-ENGPLAIDGG 359
E + E + +A+ + +D++ A Y RP E G + I+ G
Sbjct: 567 EVRA-TVAEKAQPIRDVAKAVAAIDVL----AGLAEVAVYQGYCRPIMQMEPGLIDIEAG 621
Query: 360 RHPILESIHND--FIPNNIFISEA---ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
RHP++E F+ N+ + ++VI+TGPN SGKS YL+QV LI ++AQ G +
Sbjct: 622 RHPVVEQSLGAGFFVANDTQLGHDHWHPDLVILTGPNASGKSCYLRQVGLIQLMAQTGSF 681
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
+PA +T+ + DRIFTR+G VD+L + STFM EM ETA ++ + + +SL+++DE+GR T
Sbjct: 682 IPAKTATLSICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATAKSLVLLDEIGRGT 741
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN--NRLD 531
++ DG AIAWS E+L ++A TIFA+H L+ELA++ NV +F V ++ +
Sbjct: 742 ATFDGLAIAWSVAEYLAGEIQARTIFATHYHELNELASLLENVA--NFQVTVKELPEEII 799
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
F Q+ G YG+ +AGLPS+VI AR + ++I K
Sbjct: 800 FLHQVTPGGAD-KSYGIEAGRLAGLPSSVITRARQVMAQIEK 840
>gi|254226841|ref|ZP_04920412.1| DNA mismatch repair protein MutS [Vibrio cholerae V51]
gi|125620638|gb|EAZ49001.1| DNA mismatch repair protein MutS [Vibrio cholerae V51]
Length = 862
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 174/571 (30%), Positives = 280/571 (49%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A+ LP L V+ + + L + + + +R I E+
Sbjct: 370 -RDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDGLCDLLER---AIKENP--- 422
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 423 --PVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVH 478
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 479 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL--- 534
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L LA + LD++ N + + Y RP + + I
Sbjct: 535 --WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIHIQ 588
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 589 GGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 648
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 649 AESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTST 708
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 709 YDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHA 768
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 769 VQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
>gi|68249283|ref|YP_248395.1| DNA mismatch repair protein MutS [Haemophilus influenzae 86-028NP]
gi|81336314|sp|Q4QML2.1|MUTS_HAEI8 RecName: Full=DNA mismatch repair protein MutS
gi|68057482|gb|AAX87735.1| DNA mismatch repair protein MutS [Haemophilus influenzae 86-028NP]
Length = 861
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 179/627 (28%), Positives = 306/627 (48%), Gaps = 62/627 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 267 IQLDAATRRNLELTQNLSG---GTEN---TLASVLDKCVTPMGSRLLKRWIHQPIRDVEK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 321 LKQRQQAIAEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVID 176
L+TAL+ +P L +++ S L ++ + + +E++ +++ + E
Sbjct: 370 -----------LRTALEQIPALRTIVQQKTSPFLTALFSQIADFSEQWDLLQRALIET-- 416
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
P + R A G LD R ++ + NL + RE + LK+
Sbjct: 417 -------PPLLIRDGGVIA--EGYHAELDEWRMLSDGATQYLENLEKRERESTGIDTLKI 467
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
FN G+Y+ I K P +++ N EL + + G
Sbjct: 468 GFNAVHGYYIQISQGQAH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALE 526
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPL 354
+ + L D + + L L + L LD++VN A T++ Y P F + +
Sbjct: 527 KQLYDELFDLLLPHLGSLQLASLALSELDVLVNLAECADTLN------YVMPTFCDEVSV 580
Query: 355 AIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I+ GRHP++E + D FI N + ++ +++I+TGPNM GKSTY++Q LI +LA IG
Sbjct: 581 KIENGRHPVVEQVLKDPFIANPVELNHNRHLLIITGPNMGGKSTYMRQTALITLLAYIGS 640
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +DRIFTR+G D+L S STFM EM E A ++ +E+SL+++DE+GR
Sbjct: 641 FVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEQSLVLIDEIGRG 700
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+C E L +++ T+FA+H L+ L + +H + NN + F
Sbjct: 701 TSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIHLDALEHNNSIAF 760
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++DG YGL +A +AG+P +VI+ A+ +++ K E +QIQ L
Sbjct: 761 MHAVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAE------QQIQAL 813
Query: 593 YHAAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A++ L
Sbjct: 814 REANHNQGELLF-EQETDALREAIEKL 839
>gi|399116380|emb|CCG19185.1| DNA mismatch repair protein MutS [Taylorella asinigenitalis 14/45]
Length = 872
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 173/599 (28%), Positives = 294/599 (49%), Gaps = 43/599 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D + +NLE+ E L +S+K +LF L +T G+RLLR + PLK+
Sbjct: 269 LGLDPFTRKNLELTESL------SSSKGPTLFSTLDNCETGMGSRLLRNWIHNPLKNNSE 322
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN R + + + F +SQ L+ + KP + D++
Sbjct: 323 INERQTNVSQFLQPTNEEFSISQILKTLKDQ---------LKP------ITDIERLSSRV 367
Query: 121 TLIS----SIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
+++ + L+ +L L ++ K FLL N Y ++ N + + + E +
Sbjct: 368 AMLTIKPKELAKLRDSLHTLEVVRK-------FLLEN-YGNLSINLECIPKAEELKEYLS 419
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
+ A P + + I G D LD R + + + K +E + L++
Sbjct: 420 RAI--ATEP-STQIRDGGVIAKGFDAELDDLRNTSSNNGSFLLEYETKLKEATGISLLRV 476
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N QGF++ IP + +P TF + N +T EL + SA R
Sbjct: 477 EYNRVQGFFIEIPKSRAE-NVPDTFRRKQTLKNVERFTTPELKQWEDKILSADERALKRE 535
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ + ++ I+ VS+L +A+++ +D+ H + + + +P E +AI
Sbjct: 536 KYLYDEILQNIQIWVSLLQDIAKLVASIDVYSALAYHAYN----NNWIKPELVEGTSIAI 591
Query: 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
+ GRHP++E F N+ F++ M I+TGPNM GKSTY++Q LIV+LA++G YVP
Sbjct: 592 EQGRHPVVERTIEKFTANDCFLNSENRMQIITGPNMGGKSTYMRQTALIVLLARMGSYVP 651
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++I VD IFTR+G D+L STFM EM E A ++ N + SL++MDE+GR TS+
Sbjct: 652 AESASIGEVDAIFTRIGASDDLAGGRSTFMVEMIEAASILTNSTNGSLVLMDEIGRGTST 711
Query: 477 SDGFAIAWS-CCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ C L K+ T+FA+H L+ L Y + +H V ++ L F +
Sbjct: 712 YDGLSLAWAIACRLLNHNKSLTLFATHYFELTRLVDEYKGIANVHLSAVETSDGLVFMHE 771
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYH 594
+ DGP + YG+ +A+ AGLP VI+ A+++ R+ + +M++ Q I + +
Sbjct: 772 VHDGPAN-KSYGIQVAQKAGLPMAVIKQAQNVLERLNQSNSSQMDLFDTQVSDIDVSFE 829
>gi|325983659|ref|YP_004296061.1| DNA mismatch repair protein MutS [Nitrosomonas sp. AL212]
gi|325533178|gb|ADZ27899.1| DNA mismatch repair protein MutS [Nitrosomonas sp. AL212]
Length = 865
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 187/645 (28%), Positives = 317/645 (49%), Gaps = 82/645 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLEI E + + +L +L T T G+RLL+ L PL+D
Sbjct: 264 VRMDAATRRNLEISETIRG------ERSPTLLSLLDTCSTNMGSRLLQFWLHHPLRDRGE 317
Query: 61 INTRLDCLDELMS-NEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I RLD + L+ N + + LR+ + +R+ K +++ D+ + S
Sbjct: 318 IQKRLDSITVLIGENGSSYVAVRNLLRQI-VDIERITARIALK----SARPRDLSGLRDS 372
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L II L S + + +++ + +GE +++ +
Sbjct: 373 LKLFPEII-------------TTLAQCHSERIDRLIQAL-------QVEPALGERLNKAL 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
L P V ++ I G D LD R + E + L ++ +E +PNLK+ +N
Sbjct: 413 LEE--PGVV-LREGNVIADGYDIELDELRALQNNCGEFLLQLESREKERTGIPNLKVEYN 469
Query: 240 NRQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNI---HCSTLELASLNVRNKSAAGECYI 294
GFY+ + H + K+P + Q +K E +L+ ++++ A E Y+
Sbjct: 470 RVHGFYIEVTHAHSE-KIPVDYRRRQTLKSAERYITPELKAFEDKALSAQDRALAREKYL 528
Query: 295 RTEICLEAL---VDAIRE------DVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTR 345
E+ +E L V A++E ++ VL LAE +LD YT
Sbjct: 529 YDEL-IETLIQHVPALQEMALSVAEIDVLCTLAERAQVLD-----------------YTA 570
Query: 346 PHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAA----NMVIVTGPNMSGKSTYLQQ 401
P+ + ++ID GRHP++ES +F+ N++ + M+++TGPNM GKSTY++Q
Sbjct: 571 PYLSNEDIVSIDTGRHPVVESQVENFVANDVQLGTQQTGIQQMLLITGPNMGGKSTYMRQ 630
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
+ LI +L GCYVPA + I ++D+IFTR+G D+L S STFM EM ETA ++ N +
Sbjct: 631 IALISLLVHCGCYVPAKKACIGILDQIFTRIGAADDLASGRSTFMVEMTETANILHNATA 690
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILH 520
+SL++MDE+GR TS+ DG A+A++ HLL+ ++ T+FA+H L++LA + VK +H
Sbjct: 691 QSLVLMDEVGRGTSTFDGLALAFAIARHLLTKNRSLTLFATHYFELTKLAEEFKQVKNVH 750
Query: 521 FYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR-- 578
V + F ++ +GP YGL +A +AG+P + I AR + ++ + R
Sbjct: 751 LDAVEYKQHIVFLHKVTEGPAS-QSYGLQVAALAGVPESAIRVARKYLINLEQESIHREP 809
Query: 579 ----MEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNL 619
++ + ++I M H + L+ + DE S R AL+ +
Sbjct: 810 QLDLFALSVAEPEEIVMQEHPV--IPMLRNLSPDELSPRQALEQI 852
>gi|451820042|ref|YP_007456243.1| DNA mismatch repair protein MutS [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451786021|gb|AGF56989.1| DNA mismatch repair protein MutS [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 912
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 298/578 (51%), Gaps = 54/578 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S RNLE+ E + NKK SL +L + T G R LR + +PL
Sbjct: 259 MTIDGNSRRNLELTESIRE-----KNKKGSLLWVLDKSATAMGGRTLRKWIDEPLIIKTE 313
Query: 61 INTRLDCLDELMS----NEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNA 116
I RL+ ++E S NE L L + + +R++ K+++K + NA
Sbjct: 314 IEKRLNGVNEAFSSVSFNEDLRIALKEIY-----DIERIVG-------KISNKNV---NA 358
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
K ++ LK++L+ LP++ K+L+D S LL + E ++ I+ + I
Sbjct: 359 K-------DMLSLKSSLEKLPMVKKLLEDRLSDLLKEYH---AELDELTDIKDLLDLSIK 408
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
E+ P ++ ++ IK G + +D R+S E + L N+ RE + +LK+
Sbjct: 409 EE------PSLS-IKEGNIIKDGYNSEVDELRQSKLHGKEWIAALENREREFTGIKSLKV 461
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N G+Y+ I + +++ N T EL + + A E I
Sbjct: 462 GYNKVFGYYIEISKSNYDSIPEGRYVRKQTLSNAERYITEELKVMEEK-ILGAEEKLINL 520
Query: 297 EICL-EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L + D I +++S L A ++ LD I S I+ + + Y +P E+G +
Sbjct: 521 EYALFSDIRDNIEKEISRLKKSARIISNLDGI--STLALIALE--NDYIKPEINEDGIID 576
Query: 356 IDGGRHPILESI--HNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
I GRHP++E + +F+ NN +++ ++++TGPNM+GKSTY++QV LI ++AQIG
Sbjct: 577 ITDGRHPVVEKVIGRGEFVSNNTILNQNDKELLLITGPNMAGKSTYMRQVALITLMAQIG 636
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I + D+IFTR+G D+L STFM EM E + +++N +++SL+++DE+GR
Sbjct: 637 SFVPASKANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILRNATQKSLVLLDEVGR 696
Query: 473 ATSSSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
TS+ DG +IAWS E++ L+ T+FA+H L +L I P VK V +
Sbjct: 697 GTSTYDGLSIAWSVIEYITKNDKLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKMKDS 756
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ F ++ +G YG+ +A++AGLP VI A+ I
Sbjct: 757 VIFLRKIVEGGAD-ESYGIEVAKLAGLPEAVINRAKEI 793
>gi|157150901|ref|YP_001451304.1| DNA mismatch repair protein MutS [Streptococcus gordonii str.
Challis substr. CH1]
gi|189083199|sp|A8AZU4.1|MUTS_STRGC RecName: Full=DNA mismatch repair protein MutS
gi|157075695|gb|ABV10378.1| DNA mismatch repair protein MutS [Streptococcus gordonii str.
Challis substr. CH1]
Length = 847
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 172/568 (30%), Positives = 284/568 (50%), Gaps = 63/568 (11%)
Query: 24 TSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQ 83
T K SLF ++ TKT G RLLR+ + PL D I R D + + FF S
Sbjct: 268 TGKKHGSLFWLMDETKTAMGGRLLRSWIQHPLIDKGRIIKRQDVVQVFLD---YFFERSD 324
Query: 84 FLRKFPK--ETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAK 141
+ +R++ F +T ++ L + L +P +
Sbjct: 325 LADSLKGVYDIERLVSRVSF-----------------GKTNPKDLLQLASTLSHVPQIRS 367
Query: 142 VLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGID 201
+L+ +S L ++ V + + I ID D P V + I+ G D
Sbjct: 368 ILETIESPALESL---VARLDAIPELENLISSAIDPDA-----PQV--ITEGNIIRTGFD 417
Query: 202 GLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTF 261
LD R + + + ++ K RE + NLK+ +N + G+Y + + + G +PS F
Sbjct: 418 ETLDQYRLVMREGTSWIADIEAKEREASGITNLKIDYNKKDGYYFHVTNSQL-GNVPSHF 476
Query: 262 IQVVKHGNNIHCSTLELAS-----LNVRNKSA--AGECYIRTEICLEALVDAIREDVSV- 313
+ N+ T ELA L R KSA E ++R IRE+V
Sbjct: 477 FRKATLKNSERFGTEELARIEGEMLEAREKSANLEYEIFMR-----------IREEVGKY 525
Query: 314 ---LTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESI--H 368
L LA+ L +D ++ SFA ++ + RP FT + L I GRH ++E +
Sbjct: 526 IQRLQALAQTLATVD-VLQSFAVVAESQHL---VRPSFTSSRSLQIKKGRHAVVEKVMGA 581
Query: 369 NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRI 428
+IPN+I + + ++ ++TGPNMSGKSTY++Q+ +IVI+AQ+G YVPA +++ + D I
Sbjct: 582 QSYIPNSIELDQETDIQLITGPNMSGKSTYMRQLAMIVIMAQMGSYVPAEVASLPIFDAI 641
Query: 429 FTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCE 488
FTR+G D+L S STFM EM E ++ SERSLI+ DELGR T++ DG A+A + E
Sbjct: 642 FTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIE 701
Query: 489 HLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYG 547
++ KA T+FA+H L++L++ ++ +H + ++ ++ F +++ GP YG
Sbjct: 702 YIHDRTKAKTLFATHYHELTDLSSSLTRLENVHVATLEKDGQVTFLHKIEAGPAD-KSYG 760
Query: 548 LLLAEVAGLPSTVIETARSITSRITKKE 575
+ +A++AGLP+ ++ A +I + + +E
Sbjct: 761 IHVAKIAGLPTDLLRRADAILTDLENQE 788
>gi|288800639|ref|ZP_06406096.1| DNA mismatch repair protein MutS [Prevotella sp. oral taxon 299
str. F0039]
gi|288332100|gb|EFC70581.1| DNA mismatch repair protein MutS [Prevotella sp. oral taxon 299
str. F0039]
Length = 873
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 181/599 (30%), Positives = 306/599 (51%), Gaps = 63/599 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++R+LE+I +H G S SL +++ +T T G+R+L+ L+ PLK+ + I
Sbjct: 269 LDKFTIRSLELINSMHE---GGS----SLLNVIDSTITPMGSRMLKRWLVFPLKEQKAIE 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL+ ++ + ++E LS L + + +R++ +V+ +
Sbjct: 322 QRLNVVEHIYNSEDFEQVLSDQLHRI-GDLERIISRVAVG--RVSPR------------- 365
Query: 123 ISSIILLKTALDAL-PLLAK-VLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ L+ ALDA+ P+ A V +S + ++CE SIR RI + I D
Sbjct: 366 --EVVQLRYALDAIEPIKAACVASKNESLVRMGEQITLCE-----SIRARIAKEITSDPP 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ I G++ LD R + + ++ + E+ + +LK+ +NN
Sbjct: 419 QL-------VNKGGVIADGVNPELDELRAISHSGKDYLLHIQEREVEQTGISSLKIGYNN 471
Query: 241 RQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + HKD K+P +++ T EL + A +
Sbjct: 472 VFGYYLEVRNMHKD---KVPQEWVRKQTLAQAERYITQELKEYEEKILGAEDKILALEAQ 528
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ A++E + + + A ++ +D + +SFA S + Y RP L I
Sbjct: 529 IFNDLIAALQEFIPQIQINANIIARIDCL-HSFA---SVAQSNHYVRPEINNTEVLDIKA 584
Query: 359 GRHPILE---SIHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E I ++PN+I + SE ++++TGPNM+GKS L+Q LIV+LAQ+G +
Sbjct: 585 GRHPVIEMQLPIGERYVPNDILLDSEKQQIMMITGPNMAGKSALLRQTALIVLLAQVGSF 644
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPAH ++I VVD+IFTR+G DN+ STFM EM E A ++ NVS RSLI+ DELGR T
Sbjct: 645 VPAHSASIGVVDKIFTRVGASDNISVGESTFMVEMTEAANILNNVSSRSLILFDELGRGT 704
Query: 475 SSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAW+ E+L +A T+FA+H L+E+ + +K + V N ++
Sbjct: 705 STYDGISIAWAIVEYLHEQPKARARTLFATHYHELNEMEKRFERIKNFNVSVKEANGKVM 764
Query: 532 FKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK-----EVKRMEINCL 584
F +L + G H +G+ +A++AG+P ++++ A I ++ K EV + IN L
Sbjct: 765 FMRKLVEGGSEH--SFGIHVADIAGMPKSIVKRANVILKQLEKNNDQVGEVSKNAINKL 821
>gi|354605089|ref|ZP_09023078.1| DNA mismatch repair protein mutS [Alistipes indistinctus YIT 12060]
gi|353347668|gb|EHB91944.1| DNA mismatch repair protein mutS [Alistipes indistinctus YIT 12060]
Length = 884
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 178/584 (30%), Positives = 293/584 (50%), Gaps = 71/584 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID S+RNLE+ + + SL +L T + G R+LR + PLK IE IN
Sbjct: 278 IDKFSIRNLELFAS------NSGQEGCSLSEVLDRTASPMGGRMLRRWISLPLKSIEEIN 331
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + + +L L + + + +R++ +V+ +
Sbjct: 332 ARLDLVGLFVERPELREALYESV-ALIGDLERIISRVAVG--RVSPR------------- 375
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSV--CENEKYASIRKRIGEVIDEDVL 180
++ LK AL A+ L +++A L + + C +R +I I D
Sbjct: 376 --EVVQLKNALYAVEKLQNTMREAGHPALGALGEQLDLC-----LEVRDKIEREIYSDPA 428
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + Q+ I G++ LD R + + + ++ + E +P+LK+ FNN
Sbjct: 429 N-------QIQKGGVIASGVNLELDDLRNISSNAKDILASIQQRESETTGIPSLKVAFNN 481
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAA--GE 291
G+Y+ + HKD K+P+ +I+ T EL L +K A E
Sbjct: 482 VFGYYIEVRNTHKD---KVPADWIRKQTLTGAERYITAELKEYEEKILGAESKILAIEQE 538
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
Y L V I++D S L+A + CLL + S RY RP ++
Sbjct: 539 MYAALLAELTRFVSPIQKDAS---LVARLDCLLAFAIQSVER--------RYCRPEVNDS 587
Query: 352 GPLAIDGGRHPILES---IHNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVI 407
+ I GRHP++E+ + ++IPN++++ +++ V I+TGPNMSGKS L+Q LIV+
Sbjct: 588 QVIDIKDGRHPVIETLMRVGEEYIPNDVYLDDSSQQVMIITGPNMSGKSAILRQTALIVL 647
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+GC+VPA + I VVD+IFTR+G DN+ STFM EM E+A ++ N+S RSL+++
Sbjct: 648 MAQMGCFVPAKEAKIGVVDKIFTRVGASDNISQGESTFMVEMLESASILNNISNRSLVLL 707
Query: 468 DELGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAW+ E++ S +A T+FA+H L+E+ +Y VK + V
Sbjct: 708 DEIGRGTSTYDGISIAWAMVEYIHQHPSARAKTLFATHYHELNEMEELYERVKNFNVSVK 767
Query: 525 IRNNRLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
N ++ F +L + G H +G+ +A++AG+P + + A I
Sbjct: 768 EINRKVIFLRKLVRGGTEH--SFGIHVAKMAGMPGQITDRAERI 809
>gi|433654964|ref|YP_007298672.1| DNA mismatch repair protein MutS [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293153|gb|AGB18975.1| DNA mismatch repair protein MutS [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 857
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 168/576 (29%), Positives = 301/576 (52%), Gaps = 54/576 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +++NLEI++ + +++ +L +L T T G RLL+ + +PL DIE
Sbjct: 264 MLLDNNTIKNLEIVQSPNR----NNSRDGTLLSVLDQTVTPMGGRLLKRWIEEPLIDIEK 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
IN RLD +DEL ++ F G S R + ++++SK++ + NAK
Sbjct: 320 INLRLDSVDELFND---FKGRSDL---------RNALKGIYDLERLSSKLVYQNINAK-- 365
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIY------RSVCENEKYASIRKRIGE 173
++ +K +++ LP + ++ S L I+ + +C+ I K I +
Sbjct: 366 -----DLLSIKVSIERLPKIKDLISKYNSIYLKEIFLKLDTLQDICD-----LIEKSIKD 415
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
V + IK G D +D R++ + + NL +E +
Sbjct: 416 DPSTSVKEGNI-----------IKDGFDKNVDELRKAATNGKSWITNLELNEKERTGIKT 464
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
LK+ +N G+++ + I +P +I+ N T EL + + A +
Sbjct: 465 LKVGYNKVFGYFIEVSKSYISS-VPQNYIRKQTLANAERYITPELKEIEEKILGAETKLV 523
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
++ + I+ +++ + + ++ + +LD ++ S A + + Y +P +
Sbjct: 524 ELEYEIFNSIREQIKNEINRIQMTSKYIAVLD-VLTSLAMVAES---NNYVKPIVNDGDR 579
Query: 354 LAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
+ I GRHP++E+I +D FI N+I I E ++I+TGPNM+GKSTY++QV LIV++AQ+G
Sbjct: 580 ILIKDGRHPVIETIVDDSFISNDIEIDEKKPIMIITGPNMAGKSTYMRQVALIVLMAQVG 639
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA ++ I +VDRIFTR+G D+L S STFM EM E + ++ + +++SLI++DE+GR
Sbjct: 640 SFVPASYAEIGIVDRIFTRVGASDDLFSGQSTFMVEMNEVSVILNSATQKSLIILDEVGR 699
Query: 473 ATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TS+ DG +IA + E++ +KA T+FA+H L++L +K + V N+ +
Sbjct: 700 GTSTYDGMSIACAILEYIHDKIKAKTMFATHYHELTKLEDQLNGIKNYNISVDETNDEII 759
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
F ++ G YG+ +A++AGLP+ VI+ A+ I
Sbjct: 760 FLRKIIPGSAD-KSYGIQVAKLAGLPNDVIDNAKKI 794
>gi|323492971|ref|ZP_08098109.1| DNA mismatch repair protein MutS [Vibrio brasiliensis LMG 20546]
gi|323312802|gb|EGA65928.1| DNA mismatch repair protein MutS [Vibrio brasiliensis LMG 20546]
Length = 854
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 178/578 (30%), Positives = 294/578 (50%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI H+ GT N +L +L T T G+R+L+ L QP++DI+T+N
Sbjct: 266 LDAATRRNLEIT---HNLAGGTDN---TLAEVLDHTATAMGSRMLKRWLHQPMRDIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ EQ + + K + +R+L + + D A+
Sbjct: 320 QRLDAITEV--KEQAVYAELHPVLKQIGDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP LA + + LA + ++A+ + +++ E +
Sbjct: 367 ------LRFAMQQLPELADCMGSLSNSYLAKL-------AQFAAPMDDVCQLL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L + RE + +LK+ +NN
Sbjct: 413 NPPVVIRDGGVIA--SGYNEELDEWRKLADGATEYLEQLEQEERERHGIDSLKVGYNNVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAVEKQL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP T+ + I
Sbjct: 527 --WEELFDLLLPHLEQMQNLASAISQIDVLQNLAERADSLD----YCRPSLTKEAGIQIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I ++ + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 NGRHPVVEQVMDEPFIANPIELNPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 641 AEAAQIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L L + T+FA+H L+EL P++ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLAKQLGSMTLFATHYFELTELPNQIPHLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P +VI+ AR+ +++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKSVIKNARAKLTQLEQ 797
>gi|421495585|ref|ZP_15942864.1| Msh protein [Aeromonas media WS]
gi|407185411|gb|EKE59189.1| Msh protein [Aeromonas media WS]
Length = 856
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 175/570 (30%), Positives = 283/570 (49%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L G N +L +L T T G+RLL+ + QP++D +
Sbjct: 274 MDAATRRNLELTQNLAG---GYEN---TLAEVLDRTATPMGSRLLKRWIHQPIRDRVILK 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R + EL+ + L+ L LR+ + +RVL + P+ +T
Sbjct: 328 GRQSTIKELI-EQNLYDELGNLLRQV-GDVERVLARLALRSARPRDLTR----------- 374
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ A LP L ++L D N + +V + + AS + ++++ V
Sbjct: 375 ---------LRQAFAQLPELQRLLAD-------NEHEAVQQLTERASTFPELLDLLERAV 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ VP V + I+ G + LD R + ++ + + R + LK+ +N
Sbjct: 419 ME--VPPVL-IRDGGVIRDGFNQELDELRDLANGATASLARIEERERLLTGINTLKVGYN 475
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GFY+ + + +P+ +I+ NN EL + +A + +
Sbjct: 476 KVHGFYIEVSRANSH-LVPAHYIRRQTLKNNERYIIDELKKYEDKVLTAQAQALALEKRL 534
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAID 357
E L+D + + L A L LD++ N A T+ Y P + + I+
Sbjct: 535 YEELLDTLLPHLGDLQESAAALAELDVLANLAERAETLD------YRCPTLIDEDQILIE 588
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I + M+I+TGPNM GKSTY++Q LIV+LA IG +VP
Sbjct: 589 AGRHPVVEQVMSDPFIANPIRLERERRMLIITGPNMGGKSTYMRQTALIVLLAHIGAFVP 648
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + RSL++MDE+GR TS+
Sbjct: 649 ADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLMDEIGRGTST 708
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C E L S + AYT+FA+H L+ L + + +H V + + F
Sbjct: 709 YDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMSGLANVHLDAVEHGDTIAFMHA 768
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++G YGL +A +AG+P +VI+ AR
Sbjct: 769 VQEGAASR-SYGLQVAALAGVPKSVIQQAR 797
>gi|398976864|ref|ZP_10686674.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM25]
gi|398138747|gb|EJM27761.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM25]
Length = 860
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 175/573 (30%), Positives = 280/573 (48%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 323
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCLLDRYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + D ++ L + + + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPELQVAMTDLEAPHLQRLASTTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 531 YEALLEDLISQLPPLQDTAGALAELDVLSNLAERALNLD----LNCPTFVSEPCMRISQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAQLRAYTLFATHYFELTVLPEAEPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVIVRAREHLSRL 798
>gi|88813098|ref|ZP_01128339.1| DNA mismatch repair protein [Nitrococcus mobilis Nb-231]
gi|88789582|gb|EAR20708.1| DNA mismatch repair protein [Nitrococcus mobilis Nb-231]
Length = 855
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 188/624 (30%), Positives = 297/624 (47%), Gaps = 50/624 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DATS RNLE+ L A + +L +L + T G+RLLR + +PL+D E +
Sbjct: 270 LDATSRRNLELEYNLSGA------TEHTLAWVLDSAVTGMGSRLLRRWINRPLRDHERLR 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R L M N L +Q R H +++T+++ A KS
Sbjct: 324 HRQQALAAFMGNGHL----TQL---------REQLHGLADVERITARI-----AMKSAR- 364
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL +P + L+ + LA + ++ ++ K + + R ++D
Sbjct: 365 PRDLTGLRAALRRVPEIRATLEHCDAPRLAALAEALGDHSKTSDLLGRA--LVDTP---- 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G D LD R + + + L + RE + NLK+ +N
Sbjct: 419 --PVLLRDGGVIA--EGYDPPLDELRGLRRNADQYLLELEQREREATGIANLKVSYNRVH 474
Query: 243 GFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ I Q L P +++ T EL S + SA +R ++ E
Sbjct: 475 GYYIEISRG--QSDLAPDHYLRRQTLKGAERYITPELKSFEDKILSARERALLREKMLYE 532
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMI--VNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L++ + + L AE L +D + + A +S YTRP T + I+GG
Sbjct: 533 ELLERLAAGLDALLRCAEALAEVDTLACLAERAEALS------YTRPELTAQPRVWIEGG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+IVTGPNM GKST+++Q LIV+LA IG +VPA+
Sbjct: 587 RHPVVEQVLEEPFVANDLSLDDSNRMLIVTGPNMGGKSTFMRQTALIVLLAHIGSFVPAN 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L STFM EM ETA ++ N + SL+++DE+GR T + D
Sbjct: 647 QAVIGPIDRIFTRIGASDDLTGGRSTFMVEMTETAAILHNATPESLVLLDEIGRGTGTFD 706
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G A+AW+ L L A+T+FA+H L+ L Y + + +H + F LK
Sbjct: 707 GLALAWATAADLAGRLGAFTLFATHYFELTALPEHYTSARNVHLDAAEHGTGIVFLHALK 766
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQ 597
+GP + YGL +A +AG+P VI AR ++ + R Q
Sbjct: 767 EGPANQ-SYGLQVATLAGIPPAVITAARHKLRQLEETARARPPTRAAQLPLFDP-SPGQP 824
Query: 598 RLICLKYSNQDEESIRHALQNLKE 621
L CL+ D + R AL+ L E
Sbjct: 825 ALECLRELEPDTLTPRQALELLYE 848
>gi|421483017|ref|ZP_15930595.1| DNA mismatch repair protein MutS [Achromobacter piechaudii HLE]
gi|400198681|gb|EJO31639.1| DNA mismatch repair protein MutS [Achromobacter piechaudii HLE]
Length = 866
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 187/636 (29%), Positives = 294/636 (46%), Gaps = 67/636 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+ + L + +LF +L +T G+RLLR L PL++ E
Sbjct: 258 LDPVTRRNLELTQTL------SGEDSPTLFSLLDGCRTPMGSRLLRRWLHHPLRENEQAL 311
Query: 63 TRLDCLDELMSN----EQLF--FGLSQFLRK----FPKETDRVLCHFCFK---PKKVTSK 109
R + L++ EQ F GL + LR FP + +R+ + P+++ S
Sbjct: 312 ARQQAISALLAGRMDVEQTFGSAGLLEALRAALNAFP-DIERIAARLALRSVRPRELAS- 369
Query: 110 VLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKD-AQSFLLANIYRSVCENEKYASIR 168
L+ AL++LP L +++ A S L + + + A++
Sbjct: 370 -------------------LRDALESLPALRDLVEPMADSPRLGELISHLSVDPALAALL 410
Query: 169 KRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREE 228
R A P VA + + G D LD R D + + L + RE
Sbjct: 411 VRA---------IAPEPAVA-IRDGGVLATGFDAELDELRGLAADGGDFLIQLEARERER 460
Query: 229 LKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSA 288
+ NL++ FN GFY+ + K K+P + + N T EL + + SA
Sbjct: 461 TGINNLRVEFNRVHGFYIEV-SKGQTAKVPEDYRRRQTLKNAERYITPELKTWEDKVLSA 519
Query: 289 AGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
R + E L+D + E V L+ A L LD + H + P
Sbjct: 520 QDRSLAREKWLFEQLLDVLAEHVRPLSDCAAALAELDTLAALADHARRHD----WMAPDL 575
Query: 349 TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
+E + I+ GRHP++E F PN + A M+++TGPNM GKSTY++QV LIV+L
Sbjct: 576 SEQADIDIEAGRHPVVEHAIERFTPNGCRLDPARRMLLITGPNMGGKSTYMRQVALIVLL 635
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
A+IG +VPA + I +DRIFTR+G D+L STFM EM E A ++ + SL++MD
Sbjct: 636 ARIGSFVPATRARIGKIDRIFTRIGAADDLAGGRSTFMMEMTEAAAILSASTPNSLVLMD 695
Query: 469 ELGRATSSSDGFAIAWS-CCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS+ DG A+AW+ C L +A T+FA+H L+ L P +H
Sbjct: 696 EIGRGTSTYDGLALAWAIACRLLAHNRALTLFATHYFELTRLPAEQPASANVHLAAAESA 755
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
+ + F ++++GP YG+ +A+ AG+P+ VI R +E++R+E
Sbjct: 756 SGIVFLHEVREGPASR-SYGIQVAQRAGVPAAVI--------RQATRELERLEAQGAPTP 806
Query: 588 QIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESF 623
Q+ + AA + ++I AL L+ES
Sbjct: 807 QLGLFSAAADADAQAYAETERSDAI-EALDALRESL 841
>gi|153802561|ref|ZP_01957147.1| DNA mismatch repair protein MutS [Vibrio cholerae MZO-3]
gi|124121924|gb|EAY40667.1| DNA mismatch repair protein MutS [Vibrio cholerae MZO-3]
Length = 862
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 174/571 (30%), Positives = 279/571 (48%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 328 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A+ LP L V+ + + L + + + +R I E+
Sbjct: 370 -RDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDGLCDLLER---AIKENP--- 422
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 423 --PVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVH 478
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 479 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL--- 534
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L LA + LD + N + + Y RP + + I
Sbjct: 535 --WEELFDLLLPHLEQLQQLAASVAQLDALQNLAERAENLE----YCRPTLVQEAGIHIQ 588
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 589 GGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 648
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 649 AESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTST 708
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 709 YDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHA 768
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 769 VQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 798
>gi|448728945|ref|ZP_21711265.1| DNA mismatch repair protein MutS [Halococcus saccharolyticus DSM
5350]
gi|445795993|gb|EMA46510.1| DNA mismatch repair protein MutS [Halococcus saccharolyticus DSM
5350]
Length = 950
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 179/575 (31%), Positives = 285/575 (49%), Gaps = 54/575 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DAT++R+L++ E + +L +L T G R L L +PL D T
Sbjct: 339 MGLDATALRSLDVFENR------AGDDDHTLVAVLDETACALGRRELDRWLRRPLLDQAT 392
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++EL + E L +E R L + +++ ++V +++
Sbjct: 393 IEARLDAVEEL-TRESLV-----------REEVRELLRGVYDIERLVARV------SRNR 434
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LKT LD +P L + L DA+S LLA + + +R IG I
Sbjct: 435 ANARDLRALKTTLDVVPRLREELSDAESDLLAECRDGL---DGLDDVRGLIGRAI----- 486
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A P A + I G D LD R + + E V NL + RE + +L +
Sbjct: 487 QAEPP--AEITEGGVIVQGFDDDLDDLRATAREGREWVANLEERERERTGIDSLSVGHTE 544
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLELAS---LNVRNKSAAGECYIR 295
G+Y+ + + ++ +P + Q +K+ + LE L ++ + E +
Sbjct: 545 VHGYYIEVTNANLDA-VPDEYTRRQTLKNSERFYTPELERHEDEILGAAERADSREHQLF 603
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
T+I E + R + LA+ L LD++ + AH Y RP F +G +A
Sbjct: 604 TDIRSEIAAETDR-----VQRLADHLASLDVLC-TLAHVAVEND---YARPEFGNDG-IA 653
Query: 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
I GRHP++E H +F+PN+ + E IVTGPNM+GKSTY++Q+ LI ILAQ+G +V
Sbjct: 654 IRDGRHPVVER-HAEFVPNDADLCEEP-FAIVTGPNMAGKSTYMRQIALIAILAQMGSFV 711
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + + VVDR+FTR+G D++ STFM EM E V+ + SL+++DE+GR TS
Sbjct: 712 PAQEAHLPVVDRVFTRVGASDDIAGGQSTFMREMAEVTDVLHGATAESLVLLDEVGRGTS 771
Query: 476 SSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
++DG AIA + E + + A T+FA+H +L+ELA V+ L F + + F
Sbjct: 772 TTDGEAIARAVTEFIHDEIGATTLFATHYHDLTELAEERDGVQTLQFAADRTDGEVTFLH 831
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITS 569
+ +G YG+ +A +AG+P V+E +R + S
Sbjct: 832 TVAEGAASA-SYGVDVARMAGVPEPVVERSRELVS 865
>gi|408375050|ref|ZP_11172728.1| DNA mismatch repair protein MutS [Alcanivorax hongdengensis A-11-3]
gi|407765119|gb|EKF73578.1| DNA mismatch repair protein MutS [Alcanivorax hongdengensis A-11-3]
Length = 840
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 166/570 (29%), Positives = 284/570 (49%), Gaps = 57/570 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ E L ++ +L +L +TKT G R L+ + QPL++ T+
Sbjct: 256 MDAATRRNLELTETLDG------QEQHTLAWVLDSTKTAMGARQLKRWVHQPLRNRTTLG 309
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK-PKKVTSKVLDVDNAKKSQT 121
R D + L +CF+ + V + D++
Sbjct: 310 QRQDQIAALRQG------------------------WCFESARDVLHDIGDMERILGRVA 345
Query: 122 LISS----IILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L S+ + L +L LP L L F Y + ++ + + +G+ + E
Sbjct: 346 LRSARPRDLTRLHASLSVLPALVGALPGEDCF-----YELIERIGQFPAQVELLGKAVIE 400
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVH-NLANKYREELKLPNLKL 236
+ P + R A G D L ++ RS + + AV ++ + RE +L L++
Sbjct: 401 NP-----PMLIRDGGVIA-PGYSDELDEL--RSISENAGAVLVDIEKRERERTQLSTLRV 452
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N G+Y+ + ++ + + P+ + + N T EL + SA+ +
Sbjct: 453 KYNKVHGYYIELSRREAE-QAPADYQRRQTLKNAERFITPELKEFEDKALSASSKALTLE 511
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ E L++ + D+ L A + LD++ + + RP ++ + I
Sbjct: 512 KRLYEELLEKVAADLHALQRSATAVAELDVLAALAERAEALN----WVRPQLVDDPIIEI 567
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +D F+PN++ + +A MVI+TGPNM GKSTY++Q L+ +LA +G V
Sbjct: 568 VDGRHPVVEQVLDDAFVPNSLHLDDARRMVIITGPNMGGKSTYMRQTALVALLAHLGSCV 627
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +DRIFTR+G+ D+L STFM EM ETA ++ N + SL++MDE+GR TS
Sbjct: 628 PAASARIGSLDRIFTRIGSSDDLAGGRSTFMVEMSETANILNNATAHSLVLMDEIGRGTS 687
Query: 476 SSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG ++AW+ EHL LKA+T+FA+H L++L P + H +NR+ F
Sbjct: 688 TFDGLSLAWAAAEHLARHLKAFTLFATHYFELTQLPEQLPGIYNAHLTASEHDNRIVFLH 747
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETA 564
++++GP YGL +A++AG+P +VI+ A
Sbjct: 748 RVQEGPASR-SYGLQVAQLAGVPQSVIQQA 776
>gi|389683302|ref|ZP_10174634.1| DNA mismatch repair protein MutS [Pseudomonas chlororaphis O6]
gi|388552815|gb|EIM16076.1| DNA mismatch repair protein MutS [Pseudomonas chlororaphis O6]
Length = 855
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 284/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D++ +
Sbjct: 266 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLKVLQ 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQTSIGCLLDGYR-FERLQPQLKEI-GDIERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L+ + + + A++ ++ +ID
Sbjct: 363 --DLARLRDALAALPELQVAMTELEAEHLSQLAVTTSTYPELAALLEKA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + + L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKTGYDTELDELQSLSENAGQFLIELEAREKARTGLANLKVGYNRIH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P+ +I+ T EL + + SA R ++ EA
Sbjct: 471 GYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYEA 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + + L A L LD++ N ++ P F + I GRHP
Sbjct: 530 LLETLIGHLPPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVSEPCMRITQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLSLDDQTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+PS VI AR SR+
Sbjct: 766 SQ-SYGLAVAQLAGVPSDVIVRAREHLSRL 794
>gi|70728591|ref|YP_258340.1| DNA mismatch repair protein MutS [Pseudomonas protegens Pf-5]
gi|90109853|sp|Q4KHE3.1|MUTS_PSEF5 RecName: Full=DNA mismatch repair protein MutS
gi|68342890|gb|AAY90496.1| DNA mismatch repair protein MutS [Pseudomonas protegens Pf-5]
Length = 859
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 172/570 (30%), Positives = 283/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D++ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLKVLE 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + F L L++ + +R+L + NA+
Sbjct: 324 ARQSSITCLLDGYR-FERLQPQLKEI-GDIERILARIGLR------------NARPR--- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + + ++ L + + + A++ + +ID
Sbjct: 367 --DLARLRDALAALPELQEAMTELEATHLNQLAATTSTYPELAALLAKA--IIDNP---- 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 --PAVIRDGGV--LKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYNRIH 474
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P+ +I+ T EL + SA R ++ +A
Sbjct: 475 GYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYDA 533
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + + L A L LD++ N ++ P F + I GRHP
Sbjct: 534 LLETLISHLPPLQDTAGALAELDVLSNLAERALNLD----LNCPRFVSEPCMRITQGRHP 589
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 590 VVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCE 649
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ DG +
Sbjct: 650 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLS 709
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 710 LAWAAAERLAHLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 769
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+PS VI AR SR+
Sbjct: 770 SQ-SYGLAVAQLAGVPSAVITRAREHLSRL 798
>gi|218439471|ref|YP_002377800.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 7424]
gi|218172199|gb|ACK70932.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 7424]
Length = 885
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 175/582 (30%), Positives = 289/582 (49%), Gaps = 52/582 (8%)
Query: 3 IDATSVRNLEIIEPLH-SALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+D S RNLEI + + ++ +G SL L T T G R LR L++PL DI+ I
Sbjct: 309 LDYPSRRNLEITQTVRDNSFYG------SLLWALDRTVTAMGGRALRRWLIEPLLDIKGI 362
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKSQ 120
R + ++EL N L L Q LR+ + +++T +V NA+
Sbjct: 363 TARQNTIEELKENPTLRQDLRQLLREI------------YDLERITGRVGAGTANARDLL 410
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L S++ L L+++ S L + + E E ++ IG +++ L
Sbjct: 411 ALAQSLVKLTD-------LSQLASLGTSPYLRALQKVPSELEILG--KEVIGHLVESPPL 461
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
H + + I+ GI+ LD RR + + + + NL R+ + NLK+ +N
Sbjct: 462 HLK--------EGGVIRDGINFQLDEMRRLYEEDQQWLANLEVTERQRTGVSNLKVGYNK 513
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+YLS+P + + P +I+ N T EL R +A +
Sbjct: 514 TFGYYLSMPRSKAE-QAPDNYIRKQTLTNEERYITPELKERESRILNAKDDLNRLEYEIF 572
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
L + E + + +A+ + +D++ A Y RP + + I GR
Sbjct: 573 AGLRTKVAEKAAEIRQVAKAVAAIDVL----AGLAEIAVYQDYCRPEMVDGRLIEIVDGR 628
Query: 361 HPILESIHND--FIPNNIFISE------AANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
HP++E F+PN+ ++ +++I+TGPN SGKS YL+QV LI ++AQIG
Sbjct: 629 HPVVEQSLGAGFFVPNSTYLGSLLEEQNYPDLIILTGPNASGKSCYLRQVGLIQLMAQIG 688
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + + + DRIFTR+G +D+L + STFM EM ETA ++ + + RSL+++DE+GR
Sbjct: 689 SFVPAKTAKLGICDRIFTRVGAMDDLATGQSTFMVEMNETANILNHATSRSLVLLDEIGR 748
Query: 473 ATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
T++ DG +IAW+ E+L + +++ TIFA+H L+ELA+I NV V N +
Sbjct: 749 GTATFDGLSIAWAVAEYLAAEIQSRTIFATHYHELNELASILSNVANYQVTVKEMPNEII 808
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
F Q++ G YG+ +AGLP+ VI+ A+ + ++I K
Sbjct: 809 FLHQVRPGGAD-KSYGIEAGRLAGLPAVVIDRAKQVMTQIEK 849
>gi|119487780|ref|ZP_01621289.1| DNA mismatch repair protein [Lyngbya sp. PCC 8106]
gi|119455613|gb|EAW36750.1| DNA mismatch repair protein [Lyngbya sp. PCC 8106]
Length = 886
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 189/603 (31%), Positives = 294/603 (48%), Gaps = 86/603 (14%)
Query: 3 IDATSVRNLEIIEPLH-SALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+D S RNLEI + + L+G SL L T T G+R LR LLQPL D++ I
Sbjct: 304 LDHQSRRNLEITTTVRDNTLYG------SLLWALDKTSTPMGSRALRRWLLQPLLDLKGI 357
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLD-VDNAKKSQ 120
R D + E ++N +L + Q LR+ + +++T +V + NAK
Sbjct: 358 RARHDTIQEFVNNHELRQDIQQILRQI------------YDLERLTGRVGNSTANAK--- 402
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ L +L LP LA V + +S L + EK A E +
Sbjct: 403 ----DLVSLADSLAKLPQLATVAEQGKSPYLKALQNLPQSLEKVA-----------EKIT 447
Query: 181 HARV--PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
H+ V P ++ ++ I+ +D LD R + + + NL + RE +P LK+ F
Sbjct: 448 HSLVESPPIS-VKEGELIRPEVDANLDEMRSLAVEDQQWIANLEVQERERTGIPTLKVGF 506
Query: 239 NNRQGFYLSIPHKDIQGKL---PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE---- 291
N G+Y+SI +GK P +I+ N T EL VR +A +
Sbjct: 507 NKTFGYYISIS----RGKAELAPDDYIRKQTLTNEERYITPELKEREVRILTAKEDLNQT 562
Query: 292 ---CYIRTEICLEALVDAIREDVSVLTLLAEVLC-LLDMIVNSFAHTISTKPVDRYTRPH 347
++R + D IR +VS +VLC L D+ + Y P
Sbjct: 563 EYDIFVRLRSEVAEYTDTIR-NVSKAVAAIDVLCGLADVAIRQ-----------SYCCPE 610
Query: 348 FTENGPLAIDGGRHPILESI--HNDFIPNNIFISEA--------------ANMVIVTGPN 391
E L I GRHP++E + F+PN + +++I+TGPN
Sbjct: 611 MIEGRELKIIDGRHPVVEKLLPPGFFVPNTAQLGSRIPDKEDEELTPYSYPDLIILTGPN 670
Query: 392 MSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKE 451
SGKS YL+Q+ LI ++AQ+G ++PA + + + DRIFTR+G VD+L + STFM EM E
Sbjct: 671 ASGKSCYLRQIGLIQLMAQMGSFIPASSAQLSLCDRIFTRVGAVDDLATGQSTFMVEMNE 730
Query: 452 TAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELA 510
TA ++ + +E+SL+++DE+GR T++ DG +IAWS E+L + ++A TIFA+H L+ELA
Sbjct: 731 TANILNHATEKSLVLLDEIGRGTATFDGLSIAWSVAEYLAAEIQAKTIFATHYHELNELA 790
Query: 511 TIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSR 570
+I NV V +++ F Q++ G YG+ +AGLP VI+ AR + +
Sbjct: 791 SILENVANYQVTVKELPDKIVFLHQVQPGGAD-KSYGIEAGRLAGLPDVVIQRARQVMRQ 849
Query: 571 ITK 573
I +
Sbjct: 850 IEQ 852
>gi|448476283|ref|ZP_21603447.1| DNA mismatch repair protein MutS [Halorubrum aidingense JCM 13560]
gi|445815832|gb|EMA65751.1| DNA mismatch repair protein MutS [Halorubrum aidingense JCM 13560]
Length = 946
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 167/584 (28%), Positives = 297/584 (50%), Gaps = 46/584 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ + ++ SLF L T + G RLLR L +P +D T
Sbjct: 276 VELDATTQRNLELTATMRG------DRDGSLFETLDHTVSAAGGRLLREWLTRPRRDRGT 329
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++ RLD ++ L S + R +ET + +++ ++ + ++
Sbjct: 330 LDQRLDAVEALAS--------AALARDRLRET----LGDAYDLERLAART--TSGSAGAR 375
Query: 121 TLIS---SIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+S ++ L+ +DA+ A L D+ +A + R + + ++ + + + + +
Sbjct: 376 ELLSVRDTLALVPAMVDAVEGTA--LADSP---VAAVLRDL-DRDRARELHTELADALAD 429
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D P +TQ ++ G D LD S + E + LA + + + L ++ +
Sbjct: 430 D------PPKTKTQGGL-LRTGYDDELDELIASHEEAVEWLDTLAEREKRQYGLNHVTVD 482
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
N G+Y+ + K + ++P + ++ N+ T EL
Sbjct: 483 RNKTDGYYIQV-GKSVADQVPEHYREIKTLKNSKRFVTEELEEREREVLRLEEARGELEY 541
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L + + +D +L + V+ LD + + H +TRP TE L +D
Sbjct: 542 ELFEELRERVADDAELLQDVGRVVAELDALASLATHAAGND----WTRPELTEERRLDVD 597
Query: 358 GGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E DF+PN++ + + +IVTGPNMSGKSTY++Q LI +LAQ G +VPA
Sbjct: 598 AGRHPVVERT-TDFVPNDLRLDDERGFLIVTGPNMSGKSTYMRQAALIQLLAQAGSFVPA 656
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+T+ +VD I+TR+G +D L STFM EM+E + ++ + + SL+++DE+GR T++
Sbjct: 657 RAATVGIVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATADSLVILDEVGRGTATY 716
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG +IAW+ E+L + ++A T+FA+H L+ LA P V +H V R+ + F +
Sbjct: 717 DGISIAWAATEYLHNEVRARTLFATHYHELTTLADHLPRVANVHVAVDERDGDVTFLRTV 776
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+DGP + YG+ +A++AG+P+ V+ A + R+ +E K +E
Sbjct: 777 RDGPTN-RSYGVHVADLAGVPAPVVGRADEVLDRL--REEKAIE 817
>gi|152979852|ref|YP_001352979.1| DNA mismatch repair protein MutS [Janthinobacterium sp. Marseille]
gi|189083179|sp|A6SXI2.1|MUTS_JANMA RecName: Full=DNA mismatch repair protein MutS
gi|151279929|gb|ABR88339.1| DNA mismatch repair protein [Janthinobacterium sp. Marseille]
Length = 882
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 167/593 (28%), Positives = 279/593 (47%), Gaps = 58/593 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ E + G +LF +L +T G+RLLR L +D
Sbjct: 281 IGLDAATRRNLELTETIR----GQDANAATLFSLLDHCRTAMGSRLLRHWLHHARRDQSV 336
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
R ++ LM + GL+ L P + +R+ ++++ D+
Sbjct: 337 AMARHAAINALMRADACS-GLASTLASVP-DVERITTRIAL----LSARPRDLAG----- 385
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE--- 177
++ L LP L Y S+C + A + K I + +
Sbjct: 386 --------MRGGLQQLPSL-------------RAYVSMCNKDADAPLLKTIHDALATPSD 424
Query: 178 --DVLHARVPF--VARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
D++ + A + I G D LD R + + + +L + R + N
Sbjct: 425 CLDLVERAIAMEPAAMVRDGGVIARGFDAELDELRGLSENAGQFLIDLETRERARTGINN 484
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
L++ +N GFY+ + H K+P + + N T EL + + SA
Sbjct: 485 LRVEYNKVHGFYIEVTHGQTD-KVPDDYRRRQTLKNAERYITPELKAFEDKALSAQERAL 543
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
R + E ++ + + ++ L +A L LD +V H + + P
Sbjct: 544 AREKYLYEQVLQQMTQHIATLQNIAHALAQLDTLVALAEHALR----HNWCAPQLVSEPT 599
Query: 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
+ I+ GRHP++E+ FI N+ +S ++++TGPNM GKSTY++QV LI +LA +G
Sbjct: 600 ITIEQGRHPVVENHIERFIANDCLLSSECKLLLITGPNMGGKSTYMRQVALITLLAYVGS 659
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +DRIFTR+G D+L STFM EM E+A ++ +E SL++MDE+GR
Sbjct: 660 FVPASSAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTESAAILNGATENSLVLMDEVGRG 719
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG A+AW+ +HL+ + K++T+FA+H L++L I+P +H V + + F
Sbjct: 720 TSTFDGLALAWAIAKHLIDNTKSFTLFATHYFELTQLPEIHPTAANVHLSAVEHKDSIVF 779
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQ 585
++ GP YGL +A++AG+P VI AR K + +E N +Q
Sbjct: 780 LHAVQAGPAS-QSYGLQVAQLAGVPQPVIRAAR--------KHLALLEANSMQ 823
>gi|407958334|dbj|BAM51574.1| DNA mismatch repair protein MutS [Bacillus subtilis BEST7613]
Length = 898
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 180/580 (31%), Positives = 289/580 (49%), Gaps = 50/580 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + SL L T T G+R LR LLQPL D++ I
Sbjct: 322 LDHQTRRNLEINQTVRDGSF-----HGSLLWALDRTSTTMGSRALRRWLLQPLLDLKGIQ 376
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKSQT 121
R D + EL + L L Q LR+ + +++T ++ + +A+
Sbjct: 377 ARQDTIQELYHHPALRQDLRQLLRQI------------YDLERLTGRIGANTASARDVYG 424
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
L SS++ L LA++ ++ S L + E E+ + + +++ LH
Sbjct: 425 LASSLVRLTD-------LAELAQEGHSPYLKALQTVPPELEELG--KYVLAHIVENPPLH 475
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
R + I+ G++ LD R+S D ++ + NL RE+ + NLK+ +N
Sbjct: 476 IR--------EGNLIRSGVNPTLDEMRQSLEDDNQWLANLEVTEREKTGIANLKVGYNKA 527
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC-YIRTEICL 300
G+YLS+P + + P +I+ N T EL R +A + + EI
Sbjct: 528 FGYYLSLPRSKSE-QAPDNYIRKQTLVNEERYITPELKERETRILTAQADLNQLEYEIFT 586
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT-ENGPLAIDGG 359
E + E + +A+ + +D++ A Y RP E G + I+ G
Sbjct: 587 EVRA-TVAEKAQPIRDVAKAVAAIDVL----AGLAEVAVYQGYCRPIMQMEPGLIDIEAG 641
Query: 360 RHPILESIHND--FIPNNIFISEA---ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
RHP++E F+ N+ + ++VI+TGPN SGKS YL+QV LI ++AQ G +
Sbjct: 642 RHPVVEQSLGAGFFVANDTQLGHDHWHPDLVILTGPNASGKSCYLRQVGLIQLMAQTGSF 701
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
+PA +T+ + DRIFTR+G VD+L + STFM EM ETA ++ + + +SL+++DE+GR T
Sbjct: 702 IPAKTATLSICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATAKSLVLLDEIGRGT 761
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
++ DG AIAWS E+L ++A TIFA+H L+ELA++ NV V + F
Sbjct: 762 ATFDGLAIAWSVAEYLAGEIQARTIFATHYHELNELASLLENVANFQVTVKELPEEIIFL 821
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
Q+ G YG+ +AGLPS+VI AR + ++I K
Sbjct: 822 HQVTPGGAD-KSYGIEAGRLAGLPSSVITRARQVMAQIEK 860
>gi|294141937|ref|YP_003557915.1| DNA mismatch repair protein MutS [Shewanella violacea DSS12]
gi|293328406|dbj|BAJ03137.1| DNA mismatch repair protein MutS [Shewanella violacea DSS12]
Length = 855
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 183/619 (29%), Positives = 301/619 (48%), Gaps = 43/619 (6%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L ++ +L +L T T G+R+L+ L +PL+D + I
Sbjct: 271 LDAATRRNLELTINLQGG------RENTLSAILDNTTTPMGSRMLQRWLHEPLRDRQQIE 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+RL L EL+ + LF L+ L+ + +R+ + +++ D
Sbjct: 325 SRLGALTELL-DSGLFDNLTPHLKAL-GDIERITARLALR----SARPRDFSR------- 371
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
LK AL LP + ++L QS L + + E ++ R +ID
Sbjct: 372 ------LKQALSVLPEIQQLLASCQSPHLKRLATIMSEFPDELALLDRA--IIDNP---- 419
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R ++ G + LD R ++ + L + +E + LK+ +N
Sbjct: 420 --PMLIR--DGGVLRDGYNEELDQWRALSKGATDYLKELEAREKESTGISTLKVGYNRVH 475
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + ++ +P ++ + N EL + S+ G+ + E
Sbjct: 476 GYYIEVSRRE-SDLVPLSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEKQLWEQ 534
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L D I + L L A+ LD+I N FA T Y P T+ + I+ GRHP
Sbjct: 535 LFDLILPKLHELQLFAQGAAELDVISN-FAERAETL---NYRCPTLTDISGIHIESGRHP 590
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + + FI N + ++ M+IVTGPNM GKSTY++QV LI ++A IG YVPA +
Sbjct: 591 VVEQVSQSPFIANPVTLNSTRKMLIVTGPNMGGKSTYMRQVALITLMAHIGSYVPAQEAV 650
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I VDRIFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR TS+ DG +
Sbjct: 651 IGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATTQSLVLMDEIGRGTSTYDGLS 710
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AWS E+L + A T+FA+H L++L + NV+ +H + + + F +++G
Sbjct: 711 LAWSAAEYLAEKIGAMTLFATHYFELTQLPDLIDNVENVHLDAIEHGDTIVFMHAVQEGA 770
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
YGL +A +AG+P+ VI A+ + ++ K Q + +Q
Sbjct: 771 AS-KSYGLQVAALAGVPARVIAAAKHKLHHLESRDSKDANHEPSQQTMVFPEQKISQVED 829
Query: 601 CLKYSNQDEESIRHALQNL 619
L+ N D+ S + AL+ L
Sbjct: 830 ALQSINPDDLSPKQALEIL 848
>gi|224023432|ref|ZP_03641798.1| hypothetical protein BACCOPRO_00132 [Bacteroides coprophilus DSM
18228]
gi|224016654|gb|EEF74666.1| hypothetical protein BACCOPRO_00132 [Bacteroides coprophilus DSM
18228]
Length = 878
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 179/579 (30%), Positives = 298/579 (51%), Gaps = 58/579 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D +VR+LE+ ++ GTS L ++ T + G RLL+ ++ PLKD++
Sbjct: 267 VRLDKFTVRSLELTGSMNEG--GTS-----LLDVIDHTISPMGARLLKRWIVFPLKDVKP 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD + + FF F + F +E H +++ SK A +
Sbjct: 320 INERLDVV-------EYFFREPDF-KDFIEEK----LHLIGDLERIVSK------AAVGR 361
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDED 178
++ LK AL A+ + ++A++ L I ++C SIR +I I D
Sbjct: 362 ISPREVVQLKVALQAIEPIKNACQNAENESLRRIGEQLNLC-----VSIRDKIAREIKND 416
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + + I G++ LD RR + + + + E+ +P+LK+ +
Sbjct: 417 P-----PLL--VNKGGVIADGVNEELDELRRIAYSGKDYLLQIQQREIEQTGIPSLKIAY 469
Query: 239 NNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
NN G+Y+ + HKD K+P+ +I+ N T EL + A + I
Sbjct: 470 NNVFGYYIEVRNTHKD---KVPAEWIRKQTLVNAERYITQELKEYEEKILGAEDKILILE 526
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
LV A+ E + + + A + LD ++ SFA S +RY RP ++ L I
Sbjct: 527 TRLYNELVMALSEFIPAIQINATQIARLDCLL-SFA---SVAKANRYIRPVVADDDVLDI 582
Query: 357 DGGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
GRHP++E + +I N++++ +E ++I+TGPNM+GKS L+Q LI ++AQIG
Sbjct: 583 RQGRHPVIEKQLPLGEKYIANDVYLDTEEQQIIIITGPNMAGKSALLRQTALITLMAQIG 642
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
C+VPA + I +VD+IFTR+G DN+ STFM EM E A ++ N+S RSL++ DELGR
Sbjct: 643 CFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGR 702
Query: 473 ATSSSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
TS+ DG +IAW+ EH+ K A T+FA+H L+++ + +K + V +N+
Sbjct: 703 GTSTYDGISIAWAIVEHIHEHKRARARTLFATHYHELNDMEAQFKRIKNYNVTVKEVDNK 762
Query: 530 LDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ F +L + G H +G+ +A++AG+P T+++ A I
Sbjct: 763 VIFLRKLERGGSEH--SFGIHVAKMAGMPKTIVKRADEI 799
>gi|16330413|ref|NP_441141.1| DNA mismatch repair protein MutS [Synechocystis sp. PCC 6803]
gi|383322154|ref|YP_005383007.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325323|ref|YP_005386176.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491207|ref|YP_005408883.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436474|ref|YP_005651198.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803]
gi|451814571|ref|YP_007451023.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803]
gi|1652903|dbj|BAA17821.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803]
gi|339273506|dbj|BAK49993.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803]
gi|359271473|dbj|BAL28992.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274643|dbj|BAL32161.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277813|dbj|BAL35330.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451780540|gb|AGF51509.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803]
Length = 912
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 180/580 (31%), Positives = 289/580 (49%), Gaps = 50/580 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + SL L T T G+R LR LLQPL D++ I
Sbjct: 336 LDHQTRRNLEINQTVRDGSF-----HGSLLWALDRTSTTMGSRALRRWLLQPLLDLKGIQ 390
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKSQT 121
R D + EL + L L Q LR+ + +++T ++ + +A+
Sbjct: 391 ARQDTIQELYHHPALRQDLRQLLRQI------------YDLERLTGRIGANTASARDVYG 438
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
L SS++ L LA++ ++ S L + E E+ + + +++ LH
Sbjct: 439 LASSLVRLTD-------LAELAQEGHSPYLKALQTVPPELEELG--KYVLAHIVENPPLH 489
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
R + I+ G++ LD R+S D ++ + NL RE+ + NLK+ +N
Sbjct: 490 IR--------EGNLIRSGVNPTLDEMRQSLEDDNQWLANLEVTEREKTGIANLKVGYNKA 541
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGEC-YIRTEICL 300
G+YLS+P + + P +I+ N T EL R +A + + EI
Sbjct: 542 FGYYLSLPRSKSE-QAPDNYIRKQTLVNEERYITPELKERETRILTAQADLNQLEYEIFT 600
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT-ENGPLAIDGG 359
E + E + +A+ + +D++ A Y RP E G + I+ G
Sbjct: 601 EVRA-TVAEKAQPIRDVAKAVAAIDVL----AGLAEVAVYQGYCRPIMQMEPGLIDIEAG 655
Query: 360 RHPILESIHND--FIPNNIFISEA---ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
RHP++E F+ N+ + ++VI+TGPN SGKS YL+QV LI ++AQ G +
Sbjct: 656 RHPVVEQSLGAGFFVANDTQLGHDHWHPDLVILTGPNASGKSCYLRQVGLIQLMAQTGSF 715
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
+PA +T+ + DRIFTR+G VD+L + STFM EM ETA ++ + + +SL+++DE+GR T
Sbjct: 716 IPAKTATLSICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATAKSLVLLDEIGRGT 775
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
++ DG AIAWS E+L ++A TIFA+H L+ELA++ NV V + F
Sbjct: 776 ATFDGLAIAWSVAEYLAGEIQARTIFATHYHELNELASLLENVANFQVTVKELPEEIIFL 835
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
Q+ G YG+ +AGLPS+VI AR + ++I K
Sbjct: 836 HQVTPGGAD-KSYGIEAGRLAGLPSSVITRARQVMAQIEK 874
>gi|331089571|ref|ZP_08338470.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438886|ref|ZP_08618507.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
1_1_57FAA]
gi|330404939|gb|EGG84477.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017376|gb|EGN47138.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
1_1_57FAA]
Length = 883
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 180/596 (30%), Positives = 292/596 (48%), Gaps = 73/596 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+++ RNLE+ E L K+ SL +L TKT G R LR + QPL D
Sbjct: 267 MMIDSSTRRNLELCETLRE-----KQKRGSLLWVLDKTKTAMGARTLRKYVEQPLIDKTE 321
Query: 61 INTRLDCLDEL----MSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDV 113
I RLD + EL +S E++ LS + +R++ + P+ +T+
Sbjct: 322 IIRRLDAVQELKEQAISREEIREYLSPVY-----DLERLITKIAYGSANPRDLTA----- 371
Query: 114 DNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE 173
+++L+ LP L +L++ ++ LL ++ + E + K+
Sbjct: 372 ---------------FRSSLEMLPALLYILQEMKAELLKDLAVDLDPLEDLCILVKK--- 413
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I ED P +A ++ I G + +D RR+ D + + L N RE+ + N
Sbjct: 414 AIRED------PPIA-MKEGNIINDGYNEEVDKLRRAKSDGKDWLAKLENDEREKTGIKN 466
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
LK+ +N G+YL + + + +P + + N T EL L A + Y
Sbjct: 467 LKIKYNKVFGYYLEVTNS-YKEMVPEYYTRKQTLANAERYITPELKELEDMILGAEDKLY 525
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ D I + + A+ + LD +FA + Y RP E G
Sbjct: 526 ALEYELYSEVRDLIASQIERIQKTAKAVAALD----AFASLALVAERNNYVRPKINEKGV 581
Query: 354 LAIDGGRHPILESIHNDFIPNNIFIS-------EAANMVIVTGPNMSGKSTYLQQVCLIV 406
+ I GRHP++E + IPN +FIS + + I+TGPNM+GKSTY++Q LI
Sbjct: 582 IDIKEGRHPVVERM----IPNEMFISNDTYLDDKKHRISIITGPNMAGKSTYMRQTALIA 637
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQIG +VPA + I + DRIFTR+G D+L S STFM EM E A +++N + +SL++
Sbjct: 638 LMAQIGSFVPAKSANIGLSDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLI 697
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYV 523
+DE+GR TS+ DG +IAW+ E++ L A T+FA+H L+EL NV ++ +
Sbjct: 698 LDEIGRGTSTFDGLSIAWAVIEYISDSRLLGAKTLFATHYHELTELEGKIDNVN--NYCI 755
Query: 524 VIRNNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
++ D F +K G YG+ +A++AG+P VI A+ I ++ +++
Sbjct: 756 AVKEKGDDIVFLRKIVKGGADK--SYGIQVAKLAGVPELVIGRAKEIVEELSDEDI 809
>gi|21227785|ref|NP_633707.1| DNA mismatch repair protein MutS [Methanosarcina mazei Go1]
gi|452210265|ref|YP_007490379.1| DNA mismatch repair protein MutS [Methanosarcina mazei Tuc01]
gi|44888226|sp|Q8PWA7.1|MUTS_METMA RecName: Full=DNA mismatch repair protein MutS
gi|20906191|gb|AAM31379.1| DNA mismatch repair protein [Methanosarcina mazei Go1]
gi|452100167|gb|AGF97107.1| DNA mismatch repair protein MutS [Methanosarcina mazei Tuc01]
Length = 900
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 187/601 (31%), Positives = 308/601 (51%), Gaps = 56/601 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ ++RNLEI++ + G N SL+ L TKT G+R+L+ LL+PL +E
Sbjct: 281 MVLDSVTLRNLEIVKNVRDE--GDHN---SLYRTLSFTKTPMGSRILKKWLLKPLLSVEQ 335
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++EL N L + + +L + ++ +R++ + NA+
Sbjct: 336 INHRLDAVEELAGNPLLRYDIRDWLSEV-RDIERLVGRIVYGNA----------NAR--- 381
Query: 121 TLISSIILLKTALDALPLLAK-VLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ LK +LDA+P + +L+ A + +L I + + + K IG I E+
Sbjct: 382 ----DLVALKKSLDAVPSIRDCLLEKAGAEMLKGIAEGLASFSEIEELAKMIGNAIVEE- 436
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V+ ++ IK G LD R ++ + + K ++ + +LK+ +N
Sbjct: 437 -----PPVS-VREGGMIKSGFSEELDELRDISSNSKQWIAAFQQKEKDRTGIKSLKIGYN 490
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYI 294
G+Y+ + + + ++P +I+ N T EL L +K+ A E I
Sbjct: 491 KVFGYYIEVTNAN-SSQVPDDYIRKQTMANAERFFTPELKEKESLILTANDKAVALEYEI 549
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
TEI E L +E L AE + +LD++ A + YTRP TE+ +
Sbjct: 550 FTEIT-ETLSAHSKE----LQETAERIGVLDVL----ADLAEVAENNNYTRPQLTEDCKI 600
Query: 355 AIDGGRHPILES-IHNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
I GRHP++ES + F+PN+ + N ++VTGPNM+GKSTY++Q LI I+AQ G
Sbjct: 601 LIRDGRHPVVESTVSGGFVPNDTEMDCKENQFLLVTGPNMAGKSTYMRQTALIAIMAQAG 660
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA +++I V+D++FTR+G D+L S STFM EM E A ++ N S +SL+++DE+GR
Sbjct: 661 SFVPASYASIGVIDQVFTRIGAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEIGR 720
Query: 473 ATSSSDGFAIAWSCCEHL-----LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
TS+ DG++IA + E L + ++A +FA+H L+ L VK H V
Sbjct: 721 GTSTYDGYSIAKAVVEFLHNRGKVGIRA--LFATHYHQLTSLEEKLKRVKNYHIAVKEEG 778
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
+ L F ++ G YG+ +A +AG+P VIE A I + ++ V +C K
Sbjct: 779 HELVFLRKIVPGATD-RSYGIHVARLAGVPEKVIERANEILRELERESVLEESEDCENGK 837
Query: 588 Q 588
+
Sbjct: 838 K 838
>gi|297580669|ref|ZP_06942595.1| DNA mismatch repair protein MutS [Vibrio cholerae RC385]
gi|297535085|gb|EFH73920.1| DNA mismatch repair protein MutS [Vibrio cholerae RC385]
Length = 688
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 176/573 (30%), Positives = 282/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 100 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 153
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 154 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 195
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ A+ LP L V+ + + L + R+ E + E+ D E +
Sbjct: 196 -RDLARLRHAMQQLPELHSVMSELKQPHLTEL-RTHAEP---------MNELCDLLERAI 244
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 245 KENPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 302
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 303 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL- 360
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N + + Y RP + +
Sbjct: 361 ----WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIH 412
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 413 IQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 472
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA ++I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 473 VPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATCNSLVLMDEIGRGT 532
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 533 STYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFM 592
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 593 HAVQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 624
>gi|77457361|ref|YP_346866.1| DNA mismatch repair protein MutS [Pseudomonas fluorescens Pf0-1]
gi|92087045|sp|Q3KH79.1|MUTS_PSEPF RecName: Full=DNA mismatch repair protein MutS
gi|77381364|gb|ABA72877.1| DNA mismatch repair protein [Pseudomonas fluorescens Pf0-1]
Length = 860
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 175/573 (30%), Positives = 280/573 (48%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 323
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCLLDRYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + D ++ L + + + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPELQVAMTDLEAPHLQRLATTTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 531 YEALLEDLISQLPPLQDTAGALAELDVLSNLAERALNLD----LNCPTFVSEPCMRISQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAQLRAYTLFATHYFELTVLPEAEPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVIVRAREHLSRL 798
>gi|237809472|ref|YP_002893912.1| DNA mismatch repair protein MutS [Tolumonas auensis DSM 9187]
gi|237501733|gb|ACQ94326.1| DNA mismatch repair protein MutS [Tolumonas auensis DSM 9187]
Length = 865
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 170/572 (29%), Positives = 279/572 (48%), Gaps = 57/572 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L T L +L T T G+RLL+ L QP++ +
Sbjct: 273 MDAATRRNLELTGNLSGGFDNT------LAAVLDATATPMGSRLLKRWLHQPIRSKNQLQ 326
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAKKS 119
R D + EL+ ++Q+ L L++ + +R++ +P+ ++ + +
Sbjct: 327 QRQDVITELL-DQQMMSALMPVLKQI-GDVERIIARLALRSARPRDLSRLRVAFQQLPEL 384
Query: 120 QTLIS---SIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
Q ++ ++ L A+ P L ++L+ R+V EN
Sbjct: 385 QIILQNNPTLQQLAQAISTFPELQELLE-----------RAVVENP-------------- 419
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
P V R A G LD R + + L + R+ + LK+
Sbjct: 420 --------PVVLRDGGVIA--SGYHPELDELRDLENGATRYLEQLELRERQRTGITTLKV 469
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N GFY+ + + +P +I+ NN EL + +A
Sbjct: 470 SYNKVHGFYIDVTKANAH-LVPVDYIRRQTLKNNERYLIPELKEYEDKVLTAQSRALALE 528
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ E L+D + + L + A + LD ++N+ A T +D Y RP + + I
Sbjct: 529 KQLYEDLLDQLLPHLPALQVSAAAVAELD-VLNNLAERAQT--LD-YHRPELVDEPGIQI 584
Query: 357 DGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E S+ FI N++ +++ M+I+TGPNM GKSTY++Q LIV+LA IG YV
Sbjct: 585 KAGRHPVVEQSLQTPFIANDLQLNDLRRMLIITGPNMGGKSTYMRQTALIVLLAYIGSYV 644
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +DRIFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR TS
Sbjct: 645 PAEAARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATHQSLVLMDEIGRGTS 704
Query: 476 SSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG ++AW+C E L + AYT+FA+H L++LA N+ +HF + + + F
Sbjct: 705 TYDGLSLAWACAEQLAQKINAYTLFATHYFELTQLAEQQANIVNVHFDAIEHGDSVAFMH 764
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G + YG+ +A +AG+P VI AR+
Sbjct: 765 TVQEGAANR-SYGIQVAALAGVPRAVINQARA 795
>gi|153814910|ref|ZP_01967578.1| hypothetical protein RUMTOR_01125 [Ruminococcus torques ATCC 27756]
gi|317500422|ref|ZP_07958646.1| DNA mismatch repair protein MutS [Lachnospiraceae bacterium
8_1_57FAA]
gi|145847941|gb|EDK24859.1| DNA mismatch repair protein MutS [Ruminococcus torques ATCC 27756]
gi|316898177|gb|EFV20224.1| DNA mismatch repair protein MutS [Lachnospiraceae bacterium
8_1_57FAA]
Length = 877
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 180/596 (30%), Positives = 292/596 (48%), Gaps = 73/596 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+++ RNLE+ E L K+ SL +L TKT G R LR + QPL D
Sbjct: 261 MMIDSSTRRNLELCETLRE-----KQKRGSLLWVLDKTKTAMGARTLRKYVEQPLIDKTE 315
Query: 61 INTRLDCLDEL----MSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDV 113
I RLD + EL +S E++ LS + +R++ + P+ +T+
Sbjct: 316 IIRRLDAVQELKEQAISREEIREYLSPVY-----DLERLITKIAYGSANPRDLTA----- 365
Query: 114 DNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE 173
+++L+ LP L +L++ ++ LL ++ + E + K+
Sbjct: 366 ---------------FRSSLEMLPALLYILQEMKAELLKDLAVDLDPLEDLCILVKK--- 407
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I ED P +A ++ I G + +D RR+ D + + L N RE+ + N
Sbjct: 408 AIRED------PPIA-MKEGNIINDGYNEEVDKLRRAKSDGKDWLAKLENDEREKTGIKN 460
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECY 293
LK+ +N G+YL + + + +P + + N T EL L A + Y
Sbjct: 461 LKIKYNKVFGYYLEVTNS-YKEMVPEYYTRKQTLANAERYITPELKELEDMILGAEDKLY 519
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ D I + + A+ + LD +FA + Y RP E G
Sbjct: 520 ALEYELYSEVRDLIASQIERIQKTAKAVAALD----AFASLALVAERNNYVRPKINEKGV 575
Query: 354 LAIDGGRHPILESIHNDFIPNNIFIS-------EAANMVIVTGPNMSGKSTYLQQVCLIV 406
+ I GRHP++E + IPN +FIS + + I+TGPNM+GKSTY++Q LI
Sbjct: 576 IDIKEGRHPVVERM----IPNEMFISNDTYLDDKKHRISIITGPNMAGKSTYMRQTALIA 631
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQIG +VPA + I + DRIFTR+G D+L S STFM EM E A +++N + +SL++
Sbjct: 632 LMAQIGSFVPAKSANIGLSDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLI 691
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYV 523
+DE+GR TS+ DG +IAW+ E++ L A T+FA+H L+EL NV ++ +
Sbjct: 692 LDEIGRGTSTFDGLSIAWAVIEYISDSRLLGAKTLFATHYHELTELEGKIDNVN--NYCI 749
Query: 524 VIRNNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
++ D F +K G YG+ +A++AG+P VI A+ I ++ +++
Sbjct: 750 AVKEKGDDIVFLRKIVKGGADK--SYGIQVAKLAGVPELVIGRAKEIVEELSDEDI 803
>gi|145639468|ref|ZP_01795073.1| DNA mismatch repair protein [Haemophilus influenzae PittII]
gi|145271515|gb|EDK11427.1| DNA mismatch repair protein [Haemophilus influenzae PittII]
Length = 861
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 178/627 (28%), Positives = 306/627 (48%), Gaps = 62/627 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 267 IQLDAATRRNLELTQNLSG---GTEN---TLASVLDKCVTPMGSRLLKRWIHQPIRDVEK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 321 LKQRQQSIAEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVID 176
L+TAL+ +P+L +++ L ++ + + +E+Y +++ + E
Sbjct: 370 -----------LRTALEQIPVLRTIVQQKTPPFLTALFSQIADFSEQYDLLQRALIET-- 416
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
P + R A G LD R ++ + NL + RE + LK+
Sbjct: 417 -------PPLLIRDGGVIA--EGYHAELDEWRMLSDGATQYLENLEKRERESTGIDTLKI 467
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
FN G+Y+ I K P +++ N EL + + G
Sbjct: 468 GFNAVHGYYIQISQGQAH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALE 526
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPL 354
+ + L D + + L L + L LD++VN A T++ Y P F + +
Sbjct: 527 KQLYDELFDLLLPHLGSLQLASLALSELDVLVNLAERADTLN------YVMPTFCDEVSV 580
Query: 355 AIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I+ GRHP++E + D FI N + ++ +++++TGPNM GKSTY++Q LI +LA IG
Sbjct: 581 KIENGRHPVVEQVLKDPFIANPVELNHNRHLLVITGPNMGGKSTYMRQTALITLLAYIGS 640
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +DRIFTR+G D+L S STFM EM E A ++ +E+SL+++DE+GR
Sbjct: 641 FVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEQSLVLIDEIGRG 700
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+C E L +++ T+FA+H L+ L + +H + NN + F
Sbjct: 701 TSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIHLDALEHNNSIAF 760
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++DG YGL +A +AG+P +VI+ A+ +++ K E +QIQ L
Sbjct: 761 MHAVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAE------QQIQAL 813
Query: 593 YHAAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A++ L
Sbjct: 814 REANHNQGELLF-EQETDALREAIEKL 839
>gi|145637590|ref|ZP_01793246.1| DNA mismatch repair protein [Haemophilus influenzae PittHH]
gi|145269187|gb|EDK09134.1| DNA mismatch repair protein [Haemophilus influenzae PittHH]
Length = 861
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 178/626 (28%), Positives = 304/626 (48%), Gaps = 60/626 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 267 IQLDAATRRNLELTQNLSG---GTEN---TLASVLDKCVTPMGSRLLKRWIHQPIRDVEK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 321 LKQRQQAIAEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+TAL+ +P L +++ S L ++ + + + + +R
Sbjct: 370 -----------LRTALEQIPALRTIVQQKTSPFLTALFSQIADFSEQCDLLQR------- 411
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
L P + R A G + LD R ++ + NL + RE + LK+
Sbjct: 412 -ALIETPPLLIRDGGVIA--EGYNTELDEWRMLSDGATQYLENLEKRERENTGIDTLKIG 468
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
FN G+Y+ I K P +++ N EL + + G +
Sbjct: 469 FNAVHGYYIQISQGQAH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALEK 527
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLA 355
+ L D + + L L + L LD++VN A+T++ Y P F + +
Sbjct: 528 QLYDELFDLLLPHLGALQLASLALSELDVLVNLAERANTLN------YVMPTFCDEVSVK 581
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+ GRHP++E + D FI N + ++ +++I+TGPNM GKSTY++Q LI +LA IG +
Sbjct: 582 IENGRHPVVEQVLKDPFIANPVELNHNRHLLIITGPNMGGKSTYMRQTALITLLAYIGSF 641
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM E A ++ +E+SL+++DE+GR T
Sbjct: 642 VPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEQSLVLIDEIGRGT 701
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+C E L +++ T+FA+H L+ L + +H + NN + F
Sbjct: 702 STYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLDGIANIHLDALEHNNSIAFM 761
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLY 593
++DG YGL +A +AG+P +VI+ A+ +++ K + +QIQ L
Sbjct: 762 HAVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSHSAD------QQIQALR 814
Query: 594 HAAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A++ L
Sbjct: 815 EANHNQGELLF-EQETDALREAIEKL 839
>gi|297623073|ref|YP_003704507.1| DNA mismatch repair protein MutS [Truepera radiovictrix DSM 17093]
gi|297164253|gb|ADI13964.1| DNA mismatch repair protein MutS [Truepera radiovictrix DSM 17093]
Length = 843
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 178/581 (30%), Positives = 282/581 (48%), Gaps = 66/581 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M + T++ LE+ H+AL R+L +L T+T G RLL+A L PL D E
Sbjct: 264 MQLGETALATLEVFRTAHAAL---GEGGRTLLSILDATRTAPGRRLLQAWLRHPLLDREL 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL ++ + + L +E + L + + V + NA+
Sbjct: 321 IEARLGAVEAFVQDGVLR-----------REVRKALFKMHDLERLASKLVTERANARDLC 369
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLA------NIYRSVCENEKYASIRKRIGEV 174
L S+ L +P L ++L LA + VCE R+G
Sbjct: 370 ALARSLAL-------VPELRRLLGARGERALAALGERLRVPEGVCE---------RVGAA 413
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
+ +D P + T+ I+ G D LD R D + L + R +P L
Sbjct: 414 LVDD------PPLKITEGGL-IRSGFDRELDGLRARAEDARAWIAALEAEERAATGIPTL 466
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTF--IQVVKH-----GNNIHCSTLELASLNVRNKS 287
K+ FN G+YL + ++ ++P ++ +Q +K +++ E+ K
Sbjct: 467 KIGFNGVFGYYLEVTRPYLE-RVPPSYRAVQTLKDRQRYVRDDLREREREILRFEAAAKG 525
Query: 288 AAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
E + L A DA+R+ L L LD + ++ A + R+ RP
Sbjct: 526 REYEVFGLLRGELAAAADAVRD-------LGAALAELD-VYSALAEVAAE---GRFCRPT 574
Query: 348 FTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
F+E G L I GRHP++E H FIPN++ +S + ++I+TGPNMSGKSTYL+Q LI +
Sbjct: 575 FSE-GALEIRAGRHPVVERFHP-FIPNDLTMSPSERLLILTGPNMSGKSTYLRQSALIAL 632
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
LAQIG +VPA + + + +RI+TR+G D++ STFM EM E A ++QN + +SL+++
Sbjct: 633 LAQIGSFVPAERAVLPLFERIYTRIGASDDIAGGRSTFMVEMSELATILQNATPKSLVLL 692
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
DE+GR TS+ DG A+AW+ E+L + AY +FA+H L+ L + + LH
Sbjct: 693 DEIGRGTSTFDGLALAWAAAEYLEARTGAYVLFATHYFELTALEGRLASARNLHVAAKEE 752
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
L F Q+ GP YGL +A++AG+P+ V+ AR++
Sbjct: 753 AGGLTFYHQVLPGPAS-KAYGLEVAKLAGVPAKVLARARAL 792
>gi|114331988|ref|YP_748210.1| DNA mismatch repair protein MutS [Nitrosomonas eutropha C91]
gi|122313305|sp|Q0AEI7.1|MUTS_NITEC RecName: Full=DNA mismatch repair protein MutS
gi|114309002|gb|ABI60245.1| DNA mismatch repair protein MutS [Nitrosomonas eutropha C91]
Length = 880
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 192/640 (30%), Positives = 315/640 (49%), Gaps = 71/640 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLEI L + +L +L T G+RLLR L PL++ T
Sbjct: 280 LRMDAATRRNLEITLTLRG------EEAPTLSSLLDICATSMGSRLLRHWLHHPLRNRIT 333
Query: 61 INTRLDCLDELMSNEQ--LFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
+ RLD + +L+ + L+ G+ + L+ + +R+ + T++ D+ +
Sbjct: 334 LQQRLDAVSDLIGAKPGILYAGIRERLKHI-ADIERITSRIALR----TARPRDLSGLRD 388
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
S T + II L T A+ I+R V E ++ + +
Sbjct: 389 SLTALPEIIKLITTSTAI----------------AIHRFVPAMEPDTTLTQLL------- 425
Query: 179 VLHARVPFV-ARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+HA P A ++ I G D LD R + E + L + RE +P LK+
Sbjct: 426 -VHALQPVPGAVIREGGVIADGYDAELDELRALQKNCGEFLLQLEARERERTGIPTLKVE 484
Query: 238 FNNRQGFYLSIPHKDIQG-KLPSTFI--QVVKHGNNIHCSTLEL---ASLNVRNKSAAGE 291
+N GFY+ + I G K+P+ + Q +K+ L++ +L R ++ A E
Sbjct: 485 YNRVHGFYIEVTR--IHGEKIPADYRRRQTLKNAERYSIPELQVFENKTLTAREQALAQE 542
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAE--VLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
+ E LE L D I + +AE VLC + F YT+P FT
Sbjct: 543 KKL-YEQLLEQLADFIIPLQEIARSVAELDVLCAFAERADLFG----------YTKPVFT 591
Query: 350 ENGPLAIDGGRHPILESIHNDFIPNNIFIS----EAANMVIVTGPNMSGKSTYLQQVCLI 405
++ L I+ GRHP++E+ +I N+I + E M+I+TGPNM GKSTY++Q LI
Sbjct: 592 DDPALDIEAGRHPVVENQIEQYIANDIQLGAVTREGRQMLIITGPNMGGKSTYMRQTALI 651
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
++LA G +VPA + I +D+IFTR+G D+L STFM EM E A +++N + +SL+
Sbjct: 652 ILLAHCGSFVPAGSARIGPIDQIFTRIGAADDLAGGRSTFMVEMTEAASILRNATAQSLV 711
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVV 524
++DE+GR TS+ DG A+A++ HLL+ ++YT+FA+H L+ LA +P +H V
Sbjct: 712 LVDEIGRGTSTFDGLALAFAIARHLLTQNQSYTLFATHYFELTRLAEEFPQAINVHVTAV 771
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCL 584
R+ F ++++G YGL +A +AG+P VI A I +++ ++ + + L
Sbjct: 772 EHKRRIVFLHRIEEGSASR-SYGLHVAALAGVPDKVIRNAGKILAQLEQEALSKSPQQTL 830
Query: 585 QYKQIQMLYHAAQR-----LICLKYSNQDEESIRHALQNL 619
++ I+ AA L L+ + DE + R AL+ L
Sbjct: 831 -FETIEENAEAAPASAHPVLDYLEQLHPDELTPREALEQL 869
>gi|389775398|ref|ZP_10193364.1| DNA mismatch repair protein MutS [Rhodanobacter spathiphylli B39]
gi|388437439|gb|EIL94240.1| DNA mismatch repair protein MutS [Rhodanobacter spathiphylli B39]
Length = 874
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 175/581 (30%), Positives = 285/581 (49%), Gaps = 43/581 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ + + SL +L T T G R LR L +PL+ +T+
Sbjct: 269 LDAATRRNLEL--DTHA----SGRIEHSLLGVLDETVTPMGARALRRWLTRPLRSRQTLR 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + + L + LR + +R+L + +++ D+
Sbjct: 323 RRHQAIGMLIDSRR-HESLREQLRGI-GDLERILARVALR----SARPRDLST------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYA---SIRKRIGEVIDEDV 179
L+ L A P + + + + A I+ + E ++ + IG+ D
Sbjct: 370 ------LRDGLAATPGITRAIFHDREDQQAAIHGRTLQQELSPLLHTLVESIGDHADTAA 423
Query: 180 LHARV-----PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
L AR P + R A G D LD RR + + L + + + L
Sbjct: 424 LLARAIVEQPPVLQRDGGVVA--DGYDAELDELRRLSTHADQYLVELEEREKAASGISTL 481
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
K+ +N G+Y+ I K K P+ + + N T EL S + SA +
Sbjct: 482 KVGYNRVHGYYIEI-SKGQSDKAPTHYTRRQTTKNAERYITEELKSFEDKVLSAKERSLM 540
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
R EAL+D + E + L A + LD++ + ++ P T+ +
Sbjct: 541 RERALYEALLDTLTEKLESLKAAASAIAALDVLATLAERAEALD----WSAPELTDEPGI 596
Query: 355 AIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I+ GRHP++E + ++ F PN++ + +A M+++TGPNM GKSTY++Q LIV+LA IG
Sbjct: 597 CIERGRHPVVEKVRDEPFEPNDLKLDDARRMLVITGPNMGGKSTYMRQNALIVLLAHIGS 656
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
YVPA + I +DRIFTR+G D+L STFM EM ETA ++ N + SL++MDE+GR
Sbjct: 657 YVPASRAVIGPIDRIFTRIGAGDDLSRGQSTFMVEMSETANILHNATADSLVLMDEVGRG 716
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++A + HL +AYT+FA+H L+ELA +P++ +H + +L F
Sbjct: 717 TSTYDGLSLARAAAVHLARHCRAYTLFATHYFELTELAGEFPSIANVHLDAIEYGEQLVF 776
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+KDGP + +GL +A +AGLP +VI AR + + +
Sbjct: 777 MHAVKDGPANR-SFGLQVAALAGLPKSVIADARRTLTELER 816
>gi|365971842|ref|YP_004953403.1| DNA mismatch repair protein mutS [Enterobacter cloacae EcWSU1]
gi|365750755|gb|AEW74982.1| DNA mismatch repair protein mutS [Enterobacter cloacae EcWSU1]
Length = 853
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 179/568 (31%), Positives = 285/568 (50%), Gaps = 51/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L G N +L +L +T T G+R+L+ L P++D +T+
Sbjct: 269 MDAATRRNLEITQNLAG---GVEN---TLASVLDSTVTPMGSRMLKRWLHMPIRDTDTLT 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L + L LR+ + +R+L + T++ D+
Sbjct: 323 CRQQTIAALQDR---YSELQPVLRQV-GDLERILARLALR----TARPRDLAR------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L +L D S + + ++ E ++ +R E+++ ++ A
Sbjct: 368 ------MRHAFQQLPELRSLLADVDSAPVQKLRETMGE---FSELR----ELLERAIIDA 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE L L LK+ +N
Sbjct: 415 -PPVLVRDGGVIA--PGYNEELDEWRALADGATDYLDKLEIRERERLGLDTLKVGYNAVH 471
Query: 243 GFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ I Q L P +++ N EL + ++ G+ + E
Sbjct: 472 GYYIQISRG--QSHLAPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYE 529
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L D + ++ L A L LD++VN A T++ YT P FT+ + I G
Sbjct: 530 ELFDMLMPHLADLQSSASALAELDVLVNLAERAETLN------YTCPTFTDKPGIRITEG 583
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + N+ FI N + +S M+I+TGPNM GKSTY++Q LI +LA IG YVPA
Sbjct: 584 RHPVVERVLNEPFIANPLSLSPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQ 643
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ D
Sbjct: 644 KVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEVGRGTSTYD 703
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E+L + +KA T+FA+H L++L V +H + + + F ++
Sbjct: 704 GLSLAWACAENLANKIKAMTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHTVQ 763
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
DG YGL +A +AG+P VI+ AR
Sbjct: 764 DGAAS-KSYGLAVAALAGVPKEVIKRAR 790
>gi|406885445|gb|EKD32639.1| hypothetical protein ACD_77C00023G0001 [uncultured bacterium]
Length = 793
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 176/587 (29%), Positives = 298/587 (50%), Gaps = 55/587 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID + RNLE+ +++ SL ++ T + G RLLR + P+K IE +N
Sbjct: 187 IDKFTFRNLEV-------FGSYADEGASLIKVIDKTSSPMGGRLLRNWIAMPVKSIEELN 239
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFC---FKPKKVTSKVLDVDNAKKS 119
R + ++ L+ + + L L + +R++ P++V +
Sbjct: 240 VRHNIVEVLLKDNERREELRGCLEDL-GDLERIISKAAAGKISPREVVQLKKGLQQIPPI 298
Query: 120 QTLISSIILLKTALDALPLLAKVLK-DAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+ + S + T +A L +LK D S L+ + R + + G++ D
Sbjct: 299 KEICSGVAGTGTNGEATDLAELILKLDNCSPLVEQLIREILPDPA--------GQIGKGD 350
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
++ C I +D L IAR E + + + E + +LK+ +
Sbjct: 351 II------------CPGISEELDELRKIARHG----KEFLREMEERETERTGISSLKISY 394
Query: 239 NNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
NN G+YL + HKD K+P+ +I+ N T EL + A +
Sbjct: 395 NNVFGYYLEVRNTHKD---KVPAEWIRKQTLVNAERYITQELKEYEEKILGAEEKIIAIE 451
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
++ +V AI+ + SV+ + +L LD++ SFA + +RY RP+ E+ + I
Sbjct: 452 QLLFSNIVTAIQNNTSVIQFNSSILAKLDLLC-SFAQLAKS---NRYNRPNINESNIIVI 507
Query: 357 DGGRHPILESI---HNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
GRHP++E++ ++I N++F+ S++ ++I+TGPNMSGKS L+Q LIVILAQ+G
Sbjct: 508 KEGRHPVIETLMPPGEEYIANDLFLDSDSQQIIILTGPNMSGKSALLRQTALIVILAQVG 567
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I +VD++FTR+G DN+ STFM EM ETA ++ N+S+RSLI++DE+GR
Sbjct: 568 SFVPAASAQIGIVDKVFTRVGASDNISRGESTFMVEMLETATILHNLSQRSLILLDEIGR 627
Query: 473 ATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
TS+ DG +IAW+ E++ +A T+FA+H L++L +P VK H V + R
Sbjct: 628 GTSTYDGMSIAWAIVEYIHEHPEFRAKTLFATHYHELNDLEDHFPRVKNFHISVKEVDKR 687
Query: 530 LDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ F +L P V H +G+ +A +AG+P V+ A + ++ K+
Sbjct: 688 VIFLRKLS--PGGVAHSFGIHVARMAGMPHEVVRRAERVLKQLESKD 732
>gi|406595813|ref|YP_006746943.1| DNA mismatch repair protein MutS [Alteromonas macleodii ATCC 27126]
gi|406373134|gb|AFS36389.1| DNA mismatch repair protein MutS [Alteromonas macleodii ATCC 27126]
Length = 873
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 283/570 (49%), Gaps = 50/570 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ L + ++ +LF ++ TT T G+R+L+ + PL D
Sbjct: 255 VQLDAATRRNLELTHNL------SGGQENTLFSVMDTTTTAMGSRMLQRVIHSPLTDQHE 308
Query: 61 INTRLDCLDELMSN--EQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
+++RLD ++ +++ E + L K + +R++ + + D A+
Sbjct: 309 LHSRLDAVETFINDDPEDIRTAL-----KHIGDIERIMARLALRSARPR------DFAR- 356
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCEN-EKYASIRKRIGEVIDE 177
LK A +ALP L+DA + RS+ E Y ++ + + I +
Sbjct: 357 ----------LKNAFNALP----DLQDALARFDTGQIRSISETIGTYPELQALLNDAIID 402
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P V R A G + LD R+ ++ + + + RE + LK+
Sbjct: 403 NP-----PMVIRDGGVIA--EGYNAELDELRKLSQGATDYLDAMEQRERERTGISTLKVG 455
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N GF++ I + P+ +I+ N T EL + S+ G +
Sbjct: 456 YNKVHGFFIEISRAN-SALAPAEYIRRQTLKNTERYITPELKEHEDKVLSSQGAALALEK 514
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
EAL D ++ L A L LD++ +S +D Y RPH ++ L D
Sbjct: 515 QLYEALFDNFAPHLNNLIETAAALAKLDVLCCFAERAVS---LDWY-RPHLSQECALTYD 570
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E++ D FI N + + M+I+TGPNM GKSTY++Q LI +LA IG +VP
Sbjct: 571 AGRHPVVENVMKDPFIANPLQLDTERRMLIITGPNMGGKSTYMRQTALIALLACIGSFVP 630
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+
Sbjct: 631 AENAHIGKLDRIFTRIGASDDLASGRSTFMVEMTETANILNNATENSLVLMDEIGRGTST 690
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C +L L AYT+FA+H L+EL V +H + + + F
Sbjct: 691 YDGLSLAWACASYLAKQLNAYTLFATHYFELTELPETQSGVVNVHLDAMEFEDTIRFMHT 750
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+ +G +GL +A++AG+P VI+ A+
Sbjct: 751 VSEGAAS-KSFGLQVAQLAGVPKAVIKAAQ 779
>gi|110597745|ref|ZP_01386029.1| DNA mismatch repair protein MutS [Chlorobium ferrooxidans DSM
13031]
gi|110340652|gb|EAT59132.1| DNA mismatch repair protein MutS [Chlorobium ferrooxidans DSM
13031]
Length = 875
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 183/586 (31%), Positives = 289/586 (49%), Gaps = 53/586 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLEII + GT N SL ++ T G RL+R L +PL+ IE
Sbjct: 276 MTLDLQTKRNLEIISSMQD---GTLNG--SLLQVMDHTCNPMGARLIRRWLQRPLRKIED 330
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++EL ++ GL + L + +R L +
Sbjct: 331 IQLRLDAVEELTGCREMREGLGEKLSAI-NDLERSLARIA-----------------TFR 372
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
T+ + L +L +P L ++L++A S L ++ + +RI E ID +
Sbjct: 373 TMPREVRQLGISLAIIPSLQELLQEAASARLRSL---AARLNPLPELARRIEEAIDPES- 428
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A + I+ G LD R + + + + R + +LK+ FN
Sbjct: 429 ------GASMRDGGYIRSGFHAELDDLRSISSTAKDRLMEIQQQERLNTSISSLKVQFNK 482
Query: 241 RQGFYLSIPHKDIQGKLPSTF--IQVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
G+Y+ I + K+P + Q + + L E LN KS A E +
Sbjct: 483 VFGYYIEISRAN-SDKVPPYYEKKQTLVNAERYTIPALKEYEEKILNAEEKSFALEARLF 541
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
++C E A S++ A V+ LD + SFA Y +P +++ L
Sbjct: 542 HDLCAEVAGQA-----SLIQTNASVIAELDALF-SFALAAVQYG---YCKPEMSDHRNLE 592
Query: 356 IDGGRHPILESIHND---FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
I GRHP+LE I +D ++ N+ E M+I+TGPNM+GKS++L+Q LIV+LAQ G
Sbjct: 593 IINGRHPVLERIMSDDEPYVQNDCLFDEKQKMLIITGPNMAGKSSFLRQTGLIVLLAQAG 652
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I +VDRIFTR+G DNL S STF+ EM E A ++ N + SL+++DE+GR
Sbjct: 653 SFVPAERAEIGLVDRIFTRVGASDNLASGESTFLVEMNEAASILNNATATSLLLLDEIGR 712
Query: 473 ATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TS+ DG +IAWS E++ ++ A T+FA+H L+EL P V + VV +R+
Sbjct: 713 GTSTFDGMSIAWSMSEYIAHAIGARTLFATHYHELAELENRIPGVVNYNATVVETADRVI 772
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
F ++ G YG+ +A++AG+P+ VI AR I + + K++++
Sbjct: 773 FLRKIVRGSTD-NSYGIEVAKMAGMPAEVIVRAREILAGMEKRDIE 817
>gi|119898343|ref|YP_933556.1| DNA mismatch repair protein MutS [Azoarcus sp. BH72]
gi|119670756|emb|CAL94669.1| DNA mismatch repair protein [Azoarcus sp. BH72]
Length = 845
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 176/583 (30%), Positives = 277/583 (47%), Gaps = 50/583 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ E L +L +L T T G+R LR L PL+D
Sbjct: 253 LRLDAATRRNLELTETLRG------EPSPTLLSLLDTCMTSMGSRWLRHALHHPLRDRTI 306
Query: 61 INTRLDCLDELMSNEQLFFGL-SQFLR---KFPKETDRVLCHFCFKPKKVTSKVLDVDNA 116
R + L+ + GL +Q +R + + DR+ + ++ D+
Sbjct: 307 PAARQQAVAALVGDGD---GLHAQAVRGALRGVADVDRITGRIALR----NARPRDLSAL 359
Query: 117 KKSQTLISSI--ILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
++S + + + L + + + D Q LL + R++ +E A +R G V
Sbjct: 360 RESLSRLPELRQTLAQIGDEGMVGGLAAALDVQPELLQCLQRAIA-DEPAAMVRD--GGV 416
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
I G D LD R + E + L + RE + NL
Sbjct: 417 I---------------------AAGYDAELDELRGIQTNCGEFLMALEARERERSGIANL 455
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
K+ FN GFY+ + H + K+P + + N T EL + + SA
Sbjct: 456 KVEFNKVHGFYIEVSHANAD-KVPDDYRRRQTLKNVERYITPELKAFEDKALSAQERALA 514
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
R + EAL+DA+ + L A L LD + +FA Y RP F++ +
Sbjct: 515 REKALYEALLDALSPYIPALQGCARALATLDGLA-AFAEAALRYG---YVRPVFSDQPGI 570
Query: 355 AIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E DFI N+ + M+++TGPNM GKST+++QV LI +LA +G +
Sbjct: 571 EIRGGRHPVVERQVEDFIQNDARLGSTRRMLMITGPNMGGKSTFMRQVALICLLAHVGSF 630
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + +D IFTR+G D+L S STFM EM E + ++ +E SL++MDE+GR T
Sbjct: 631 VPAQSAVLGPLDAIFTRIGASDDLASGRSTFMVEMTEASAILHGATEHSLVLMDEIGRGT 690
Query: 475 SSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG A+A++ HLL ++ T+FA+H L+ L YP +H V +R+ F
Sbjct: 691 STFDGLALAFAIARHLLEKNRSLTLFATHYFELTRLNGEYPECANVHLDAVEHGHRIVFL 750
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
L+DGP YG+ +A +AG+P+ VI A+ + +EV
Sbjct: 751 HALEDGPAS-QSYGIEVAALAGIPAPVIRDAKRRLRALENREV 792
>gi|423201332|ref|ZP_17187912.1| DNA mismatch repair protein mutS [Aeromonas veronii AER39]
gi|404617018|gb|EKB13955.1| DNA mismatch repair protein mutS [Aeromonas veronii AER39]
Length = 863
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 282/570 (49%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L + +L +L T T G+RLL+ + QP++D +
Sbjct: 281 MDAATRRNLELTQNL------AGGYENTLAEVLDRTATPMGSRLLKRWIHQPIRDRVILK 334
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R + EL+ + L+ L LR+ + +RVL + P+ +T
Sbjct: 335 GRQSTIKELI-EQNLYDELGNLLRQV-GDVERVLARLALRSARPRDLTR----------- 381
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ A LP L ++L D N + +V + + AS + ++++ V
Sbjct: 382 ---------LRQAFAQLPELQRLLAD-------NEHEAVQQLAERASTFPELLDLLERAV 425
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ VP V + I+ G + LD R + ++ + + + + LK+ +N
Sbjct: 426 ME--VPPVL-IRDGGVIRDGFNQELDELRDLANGATASLARIEEREKLLTGINTLKVGYN 482
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GFY+ + + +P+ +I+ NN EL + +A + +
Sbjct: 483 KVHGFYIEVSRANSH-LVPAHYIRRQTLKNNERYIIDELKKYEDKVLTAQSQALALEKRL 541
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAID 357
E L+DA+ + L A L LD++ N A T+ Y P + + I+
Sbjct: 542 YEELLDALLPHLGDLQDSAAALAELDVLANLAERAETLD------YRCPTLIDEDQIIIE 595
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D FI N I + M+I+TGPNM GKSTY++Q LIV+LA IG +VP
Sbjct: 596 AGRHPVVEQVMTDPFIANPIRLERERRMLIITGPNMGGKSTYMRQTALIVLLAHIGAFVP 655
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + RSL++MDE+GR TS+
Sbjct: 656 ADSAHIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLMDEIGRGTST 715
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C E L S + AYT+FA+H L+ L + + +H V + + F
Sbjct: 716 YDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMSGLANVHLDAVEHGDTIAFMHA 775
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++G YGL +A +AG+P +VI+ AR
Sbjct: 776 VQEGAASR-SYGLQVAALAGVPKSVIQQAR 804
>gi|189030769|sp|A1K764.2|MUTS_AZOSB RecName: Full=DNA mismatch repair protein MutS
Length = 872
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 181/596 (30%), Positives = 276/596 (46%), Gaps = 76/596 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ E L +L +L T T G+R LR L PL+D
Sbjct: 280 LRLDAATRRNLELTETLRG------EPSPTLLSLLDTCMTSMGSRWLRHALHHPLRDRTI 333
Query: 61 INTRLDCLDELMSNEQLFFGL-SQFLR---KFPKETDRVLCHFCFKPKKVTSKVLDVDNA 116
R + L+ + GL +Q +R + + DR+ + NA
Sbjct: 334 PAARQQAVAALVGDGD---GLHAQAVRGALRGVADVDRITGRIALR------------NA 378
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLK---------------DAQSFLLANIYRSVCEN 161
+ + L+ +L LP L + L D Q LL + R++ +
Sbjct: 379 RPR-----DLSALRESLSRLPELRQTLAQIGDEGMVGGLAAALDVQPELLQCLQRAIA-D 432
Query: 162 EKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNL 221
E A +R G VI G D LD R + E + L
Sbjct: 433 EPAAMVRD--GGVI---------------------AAGYDAELDELRGIQTNCGEFLMAL 469
Query: 222 ANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL 281
+ RE + NLK+ FN GFY+ + H + K+P + + N T EL +
Sbjct: 470 EARERERSGIANLKVEFNKVHGFYIEVSHANAD-KVPDDYRRRQTLKNVERYITPELKAF 528
Query: 282 NVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD 341
+ SA R + EAL+DA+ + L A L LD + +FA
Sbjct: 529 EDKALSAQERALAREKALYEALLDALSPYIPALQGCARALATLDGLA-AFAEAALRYG-- 585
Query: 342 RYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQ 401
Y RP F++ + I GGRHP++E DFI N+ + M+++TGPNM GKST+++Q
Sbjct: 586 -YVRPVFSDQPGIEIRGGRHPVVERQVEDFIQNDARLGSTRRMLMITGPNMGGKSTFMRQ 644
Query: 402 VCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE 461
V LI +LA +G +VPA + + +D IFTR+G D+L S STFM EM E + ++ +E
Sbjct: 645 VALICLLAHVGSFVPAQSAVLGPLDAIFTRIGASDDLASGRSTFMVEMTEASAILHGATE 704
Query: 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILH 520
SL++MDE+GR TS+ DG A+A++ HLL ++ T+FA+H L+ L YP +H
Sbjct: 705 HSLVLMDEIGRGTSTFDGLALAFAIARHLLEKNRSLTLFATHYFELTRLNGEYPECANVH 764
Query: 521 FYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
V +R+ F L+DGP YG+ +A +AG+P+ VI A+ + +EV
Sbjct: 765 LDAVEHGHRIVFLHALEDGPAS-QSYGIEVAALAGIPAPVIRDAKRRLRALENREV 819
>gi|398849382|ref|ZP_10606123.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM80]
gi|398250867|gb|EJN36158.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM80]
Length = 860
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 174/573 (30%), Positives = 281/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 323
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + E+L L + + +R+L + NA+
Sbjct: 324 ARQTSITCLLDRYRFEKLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + D ++ L + + + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPELQVAMTDLEAPHLQGLATTTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 531 YEALLEDLISQLPPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVSEPCMRISQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAQLRAYTLFATHYFELTVLPEAEPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVIVRAREHLSRL 798
>gi|330446962|ref|ZP_08310613.1| DNA mismatch repair protein MutS [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491153|dbj|GAA05110.1| DNA mismatch repair protein MutS [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 859
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 171/570 (30%), Positives = 285/570 (50%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L G N +L +L T T G+RLL+ L QP++D + +N
Sbjct: 268 LDAATRRNLELTQNLAG---GYDN---TLASVLDQTATPMGSRLLKRWLHQPIRDQKQLN 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E + +F ++ LR + +R+L + +
Sbjct: 322 GRLDAI-EAFKDSGMFVDVAGVLRHM-GDLERILARLALRSARP---------------- 363
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ ++TA+ LP LA++L + ++++ YA+ + E+++ ++
Sbjct: 364 -RDLARMRTAMQYLPELAELLAEVPQARISDL-------ATYAAPMDELCELLERAIIE- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L RE + +LK+ FN
Sbjct: 415 NPPVIIRDGGVLA--PGYNAELDEWRDLADGATKFLEELEASERERHDIDSLKVGFNQVH 472
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +PS ++ Q +K+ L E LN ++K+ A E +
Sbjct: 473 GFFIQV-SRGQSHLVPSHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 528
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L A L LD++ N S Y RP E + I
Sbjct: 529 --WEELFDQLLPHLEQLQNAASALSELDVLTNLAERADSLN----YCRPELMEQTGIEIT 582
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I + + M+I+TGPNM GKSTY++Q LI ++A +G +VP
Sbjct: 583 AGRHPVVEHVLSEPFIANPISLHQDRRMLIITGPNMGGKSTYMRQTALIALMAHVGSFVP 642
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A I +DRIFTR+G D+L S STFM EM ETA ++ N +++SL++MDE+GR TS+
Sbjct: 643 AEAVKIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATQQSLVLMDEIGRGTST 702
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L L A T+FA+H L+EL ++ + +H V + + F
Sbjct: 703 YDGLSLAWASAEWLADKLSAMTLFATHYFELTELPSLLTGLANVHLDAVEHGDEIAFMHA 762
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++G YGL +A +AG+P +VI+ A+
Sbjct: 763 VQEGAAS-KSYGLAVASLAGVPKSVIKRAK 791
>gi|90412105|ref|ZP_01220112.1| DNA mismatch repair protein [Photobacterium profundum 3TCK]
gi|90327083|gb|EAS43462.1| DNA mismatch repair protein [Photobacterium profundum 3TCK]
Length = 845
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 182/631 (28%), Positives = 305/631 (48%), Gaps = 63/631 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L T L +L T T G+RLL+ L QP++D + +N
Sbjct: 257 LDAATRRNLELTQNLSGGFDNT------LASVLDHTATPMGSRLLKRWLHQPIRDTKQLN 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + + +F +++ L + +R+L + +
Sbjct: 311 HRLDAI-AAFKDTGMFIEVAEVLHHM-GDLERILARLALRSARP---------------- 352
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ +++AL +LP LA+VL D + + + S + + +R +I+
Sbjct: 353 -RDLARMRSALQSLPQLAEVLADIEQPRIGELANSSAPMDDLCELLERA--IIENP---- 405
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R + + +L + RE+ + +LK+ FN
Sbjct: 406 --PVIIRDGGVLA--PGYNAELDEWRDLADGAKKFLDDLETREREQHGIDSLKVGFNQVH 461
Query: 243 GFYLSIPHKDIQGKL-PSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRT 296
GF++ I Q L P ++ Q +K+ L E LN ++K+ E +
Sbjct: 462 GFFIQISRG--QSHLAPDHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALGLEKKL-- 517
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPL 354
E L D + + L A L LD++ N A T++ Y RP T+ +
Sbjct: 518 ---WEELFDQLLPHLEQLQNAASALSELDVLANLAERADTLN------YCRPELTDQTGI 568
Query: 355 AIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GRHP++E + ++ FI N I + M+I+TGPNM GKSTY++Q LI ++A +G
Sbjct: 569 EIAAGRHPVVEQVLSEPFIANPISLHHDRRMLIITGPNMGGKSTYMRQTALIALMAHVGS 628
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA I +DRIFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR
Sbjct: 629 FVPAEAVKIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSKSLVLMDEIGRG 688
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+ E L + A T+FA+H L+EL ++ + +H V + + F
Sbjct: 689 TSTYDGLSLAWASAEWLAEKIAAMTLFATHYFELTELPSMMDGLANVHLDAVEHGDEIAF 748
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRIT----KKEVKRMEINCLQYKQ 588
+++G YGL +A +AG+P VI+ A++ +++ ++ +K + +Q
Sbjct: 749 MHAVQEGAAS-KSYGLAVASLAGVPKAVIKRAKAKLTQLETTGHQQAIKNPSKAPREEQQ 807
Query: 589 IQMLYHAAQRLICLKYSNQDEESIRHALQNL 619
+ +L + L N DE + R AL L
Sbjct: 808 LTLLPEPSDVEEALAKVNPDEMTPRQALDEL 838
>gi|448240585|ref|YP_007404638.1| methyl-directed mismatch repair protein [Serratia marcescens WW4]
gi|445210949|gb|AGE16619.1| methyl-directed mismatch repair protein [Serratia marcescens WW4]
gi|453064652|gb|EMF05616.1| DNA mismatch repair protein MutS [Serratia marcescens VGH107]
Length = 851
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 181/595 (30%), Positives = 296/595 (49%), Gaps = 58/595 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L G+ N +L +L T T G+R+L+ L P +DI+ +
Sbjct: 269 MDAATRRNLELTQSLSG---GSDN---TLAAILDRTVTPMGSRMLKRWLHMPTRDIKVLT 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L ++LF L LR+ + +R+L + T++ D+
Sbjct: 323 ARQQAIGAL---QELFADLQPSLRQV-GDQERILARLALR----TARPRDLAR------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP + +L+D ++ + + V + ++ + E+++ V+ +
Sbjct: 368 ------MRHAFQQLPDIRALLQDVKTPHVQQLLSQVGQFDE-------LRELLERAVIES 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R S+ + L + RE+L L LK+ FN
Sbjct: 415 -PPVLVRDGGVIA--PGYNSELDEWRALADGASDYLDRLEIREREKLGLDTLKVGFNGVH 471
Query: 243 GFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ + Q L P +++ N EL + ++ G+ + +
Sbjct: 472 GYYIQVSRG--QSHLVPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALAIEKSLYD 529
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L D + ++ L A L LD++ N A T++ Y P +E + I G
Sbjct: 530 ELFDLLLPHLAELQQSAAALAELDVLANLAERADTLN------YACPTMSEQPGIRITEG 583
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + ++ FI N + +S M+I+TGPNM GKSTY++Q LIV++A IG YVPA
Sbjct: 584 RHPVVEQVLSEPFISNPLTLSPQRRMLIITGPNMGGKSTYMRQTALIVLMAHIGSYVPAT 643
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+TI VDRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ D
Sbjct: 644 KATIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDEIGRGTSTYD 703
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E+L + +KA T+FA+H L+ L V +H + + + F ++
Sbjct: 704 GLSLAWACAENLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDALEHGDTIAFMHSVQ 763
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR-------SITSRITKKEVKRMEINCLQ 585
DG YGL +A +AG+P VI+ AR SI+S V ++ LQ
Sbjct: 764 DGAAS-KSYGLAVAALAGVPRDVIKRARQKLRELESISSHTASGSVDATQMTLLQ 817
>gi|423304374|ref|ZP_17282373.1| DNA mismatch repair protein mutS [Bacteroides uniformis CL03T00C23]
gi|423310512|ref|ZP_17288496.1| DNA mismatch repair protein mutS [Bacteroides uniformis CL03T12C37]
gi|392681683|gb|EIY75040.1| DNA mismatch repair protein mutS [Bacteroides uniformis CL03T12C37]
gi|392684703|gb|EIY78026.1| DNA mismatch repair protein mutS [Bacteroides uniformis CL03T00C23]
Length = 871
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 179/581 (30%), Positives = 296/581 (50%), Gaps = 58/581 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +VR+LE++ ++ G S SL +++ T + G RLL+ L+ PLKD++ IN
Sbjct: 267 LDKFTVRSLELMGSMND---GGS----SLLNVIDKTISPMGARLLKRWLVFPLKDVQPIN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL+ + + FF F KE H +++ SKV +
Sbjct: 320 ERLNVV-------EYFFRQPDF-----KELIEEQLHLIGDLERIISKV------AVGRVS 361
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDEDVL 180
++ LK AL A+ + DA + L +I ++C+ IR RI ID D
Sbjct: 362 PREVVALKVALQAIEPIKAACMDADNASLNHIGEQLNICQ-----FIRDRIDREIDNDP- 415
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK G+ LD RR + + + + E ++P+LK+ +NN
Sbjct: 416 ----PLL--INKGGVIKSGVSAELDELRRIAYSGKDYLLQIQQRESELTEIPSLKIGYNN 469
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+Y+ + HKD K+P+ +I+ N T EL + A + +
Sbjct: 470 VFGYYIEVRNTHKD---KVPAEWIRKQTLANAERYITQELKEYEEKILGAEDKILVLETQ 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
LV ++ E + + + A + LD ++ SFA + + Y RP ++ L I
Sbjct: 527 LYAELVQSLSEFIPAIQINANQIARLDCLL-SFA---TAARENNYIRPVIADDDVLEIHQ 582
Query: 359 GRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E I +I N++ + S+ ++I+TGPNM+GKS L+Q LI +LAQIG +
Sbjct: 583 GRHPVIEKQLPIGEKYIANDVMLDSQTQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 642
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +VD+IFTR+G DN+ STFM EM E A ++ N+S RSL++ DELGR T
Sbjct: 643 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGRGT 702
Query: 475 SSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAW+ EH+ KA T+FA+H L+E+ + +K + V +N++
Sbjct: 703 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVI 762
Query: 532 FKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
F +L + G H +G+ +A++AG+P ++++ A I ++
Sbjct: 763 FLRKLERGGSEH--SFGIHVAKMAGMPKSIVKRANDILKQL 801
>gi|297569846|ref|YP_003691190.1| DNA mismatch repair protein MutS [Desulfurivibrio alkaliphilus
AHT2]
gi|296925761|gb|ADH86571.1| DNA mismatch repair protein MutS [Desulfurivibrio alkaliphilus
AHT2]
Length = 884
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 180/584 (30%), Positives = 285/584 (48%), Gaps = 50/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+ + + SL L T+T G R L+ +LL PLKD+E IN
Sbjct: 281 LDEATRRNLELTTSISDG-----RRDGSLLAALDLTRTPMGARQLKKSLLSPLKDVEAIN 335
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +++L++ ++L ++ D L + + VL NA+
Sbjct: 336 RRLDAVEQLLTEQELG-----------RQLDEALAAIYDLERLNSRAVLGRANAR----- 379
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L +L LPL+ ++L +Q LL + + + E A + + + I +D
Sbjct: 380 --DLSALGVSLGRLPLIRQLLA-SQPGLLGQLGQQIDE---LADLHQLLTSAIRDDA--- 430
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P R I+ G + LD D + + L + RE + NLK+ +N
Sbjct: 431 --PVGLREGNL--IRPGFNAELDELVAMQRDGKQLIAGLEARERERTGIANLKVGYNKVF 486
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+YL + + ++P FI+ N T EL + S A E + E
Sbjct: 487 GYYLEVSRGKL-AEVPEDFIRKQTLVNAERFITPELKEFESK-VSGAEEKRLELEY---R 541
Query: 303 LVDAIREDVSVLT--LLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
L IRE V+ ++ CL +++ A Y RP + I GR
Sbjct: 542 LFCQIREQVAAAGSRIMQSAGCL--AMIDLLAALARGAARFNYVRPVVNAGEEIRIVEGR 599
Query: 361 HPILES--IHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E F+PN++ + + + ++I+TGPNM+GKST L+Q LIV++AQ+G +VPA
Sbjct: 600 HPVIERNLPPGRFVPNDVHLDQDSKEVMIITGPNMAGKSTVLRQTALIVLMAQMGGFVPA 659
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I VVDRIFTR+G +D+L STFM EM ETA ++ N + +SL+++DE+GR TS+
Sbjct: 660 AEAGIGVVDRIFTRVGAMDDLRRGQSTFMVEMNETANILNNATPQSLVILDEIGRGTSTF 719
Query: 478 DGFAIAWSCCEHLLSLKA---YTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG AIAW+ E L+ T+FA+H L+ELA P + H V N+ + F
Sbjct: 720 DGLAIAWAVAEALVQKGGKGVKTMFATHYHELTELAATEPRIHNFHIAVREWNDTIVFLH 779
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
+L G YG+ +A +AG+P+TV+ A+ + I + E R
Sbjct: 780 KLLPGGVSR-SYGIQVAALAGVPATVVARAKELLHNIEQGEFTR 822
>gi|407682764|ref|YP_006797938.1| DNA mismatch repair protein MutS [Alteromonas macleodii str.
'English Channel 673']
gi|407244375|gb|AFT73561.1| DNA mismatch repair protein MutS [Alteromonas macleodii str.
'English Channel 673']
Length = 873
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 283/570 (49%), Gaps = 50/570 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ L + ++ +LF ++ TT T G+R+L+ + PL D
Sbjct: 255 VQLDAATRRNLELTHNL------SGGQENTLFSVMDTTTTAMGSRMLQRVIHSPLTDQHE 308
Query: 61 INTRLDCLDELMSN--EQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
+++RLD ++ +++ E + L K + +R++ + + D A+
Sbjct: 309 LHSRLDAVETFINDDPEDIRTAL-----KHIGDIERIMARLALRSARPR------DFAR- 356
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCEN-EKYASIRKRIGEVIDE 177
LK A +ALP L+DA + RS+ E Y ++ + + I +
Sbjct: 357 ----------LKNAFNALP----DLQDALARFDTGQIRSISETIGTYPELQALLNDAIID 402
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P V R A G + LD R+ ++ + + + RE + LK+
Sbjct: 403 NP-----PVVIRDGGVIA--EGYNAELDELRKLSQGATDYLDAMEQRERERTGISTLKVG 455
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N GF++ I + P+ +I+ N T EL + S+ G +
Sbjct: 456 YNKVHGFFIEISRAN-SALAPAEYIRRQTLKNTERYITPELKEHEDKVLSSQGAALALEK 514
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
EAL D ++ L A L LD++ +S +D Y RPH ++ L D
Sbjct: 515 QLYEALFDNFAPYLNKLIETASALAKLDVLCCFAERAVS---LDWY-RPHLSQECALTYD 570
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E++ D FI N + + M+I+TGPNM GKSTY++Q LI +LA IG +VP
Sbjct: 571 AGRHPVVENVMKDPFIANPLQLDTERRMLIITGPNMGGKSTYMRQTALIALLACIGSFVP 630
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+
Sbjct: 631 AENAHIGKLDRIFTRIGASDDLASGRSTFMVEMTETANILNNATENSLVLMDEIGRGTST 690
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C +L L AYT+FA+H L+EL V +H + + + F
Sbjct: 691 YDGLSLAWACASYLAKQLNAYTLFATHYFELTELPETQSGVVNVHLDAMEFEDTIRFMHT 750
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+ +G +GL +A++AG+P VI+ A+
Sbjct: 751 VSEGAAS-KSFGLQVAQLAGVPKAVIKAAQ 779
>gi|281412509|ref|YP_003346588.1| DNA mismatch repair protein MutS [Thermotoga naphthophila RKU-10]
gi|281373612|gb|ADA67174.1| DNA mismatch repair protein MutS [Thermotoga naphthophila RKU-10]
Length = 793
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 159/578 (27%), Positives = 285/578 (49%), Gaps = 50/578 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +V NL +I ++ ++LF +L T+T G RLL+ +L PL D +
Sbjct: 250 MILDSATVENLSLI---------PGDRGKNLFDVLNNTETPMGARLLKKWILHPLVDRKQ 300
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ ++ L+++ + FL ++ +R++ + ++
Sbjct: 301 IEERLEAVERLVNDRVSLEEMRNFLSNM-RDVERIVSRVEY-----------------NR 342
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ ++ L+ L+ +P L ++L + ++ + E+ + +R I++D L
Sbjct: 343 SVPRDLVALRETLEIIPKLNEILSNF------GVFNKLAFPEELVDLLRR---AIEDDPL 393
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + IK G LD R E + K RE + L++ +N
Sbjct: 394 GS-------PGEGKVIKRGFSSELDEYRDLLEHAEERLKKFEEKERERTGIQKLRVGYNQ 446
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + ++ K+P + + N+ T EL + +A +
Sbjct: 447 VFGYYIEVTKANLD-KIPDDYERKQTLVNSERFITPELKEFETKIMAAKERIEEMEKELF 505
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ + + +++ +L ++E L +D++ I + YT+P F+E+ L I GGR
Sbjct: 506 KNVCEEVKKHKEILLKISEDLAKMDVLSTLAYDAI----LYNYTKPVFSEDR-LEIKGGR 560
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HP++E +F+ N+I++ V++TGPNMSGKST+++QV LI ++AQIG +VPA +
Sbjct: 561 HPVVERFTQNFVENDIYMDNEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKA 620
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
+ V DRIFTRMG D+L STF+ EM E A ++ +E+SL+++DE+GR TS+ DG
Sbjct: 621 ILPVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKSTEKSLVLLDEVGRGTSTQDGV 680
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+IAW+ E L+ +FA+H L+EL +P V+ V + F ++ DG
Sbjct: 681 SIAWAISEELIKRGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGV 740
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
YG+ +A++AG+P VI A I R K K+
Sbjct: 741 AD-RSYGIEVAKIAGIPDRVINRAYEILERNFKNNTKK 777
>gi|384423803|ref|YP_005633161.1| DNA mismatch repair protein MutS [Vibrio cholerae LMA3984-4]
gi|327483356|gb|AEA77763.1| DNA mismatch repair protein MutS [Vibrio cholerae LMA3984-4]
Length = 861
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 174/571 (30%), Positives = 279/571 (48%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 273 LDAATRRNLELT---HNLAGGTDN---TLAEVLDHCATPMGSRMLKRWIHQPMRDNATLN 326
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 327 QRLDAITEL--KETALYGELHPVLKQIGDIERILARLALRSARP---------------- 368
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A+ LP L V+ + + L + + + +R I E+
Sbjct: 369 -RDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDGLCDLLER---AIKENP--- 421
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 422 --PVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVH 477
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 478 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL--- 533
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L LA + LD++ N + + Y RP + + I
Sbjct: 534 --WEELFDLLLPHLEQLQQLAASVAQLDVLQNLAERAENLE----YCRPTLVQEAGIHIQ 587
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 588 GGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 647
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 648 AENARIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTST 707
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + A T+FA+H L+EL + P++ +H V + + F
Sbjct: 708 YDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHA 767
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 768 VQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 797
>gi|406675468|ref|ZP_11082657.1| DNA mismatch repair protein mutS [Aeromonas veronii AMC35]
gi|404627800|gb|EKB24600.1| DNA mismatch repair protein mutS [Aeromonas veronii AMC35]
Length = 863
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 282/570 (49%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L + +L +L T T G+RLL+ + QP++D +
Sbjct: 281 MDAATRRNLELTQNL------AGGYENTLAEVLDRTATPMGSRLLKRWIHQPIRDRVILK 334
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R + EL+ + L+ L LR+ + +RVL + P+ +T
Sbjct: 335 GRQSTIKELI-EQNLYDELGGLLRQV-GDVERVLARLALRSARPRDLTR----------- 381
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ A LP L ++L D N + +V + + AS + ++++ V
Sbjct: 382 ---------LRQAFAQLPELQRLLAD-------NEHEAVQQLAERASTFPELLDLLERAV 425
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ VP V + I+ G + LD R + ++ + + + + LK+ +N
Sbjct: 426 ME--VPPVL-IRDGGVIRDGFNQELDELRDLANGATASLARIEEREKLLTGINTLKVGYN 482
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GFY+ + + +P+ +I+ NN EL + +A + +
Sbjct: 483 KVHGFYIEVSRANSH-LVPAHYIRRQTLKNNERYIIDELKKYEDKVLTAQSQALALEKRL 541
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAID 357
E L+DA+ + L A L LD++ N A T+ Y P + + I+
Sbjct: 542 YEELLDALLPHLGDLQDSAAALAELDVLANLAERAETLD------YRCPTLIDEDQIIIE 595
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D FI N I + M+I+TGPNM GKSTY++Q LIV+LA IG +VP
Sbjct: 596 AGRHPVVEQVMTDPFIANPIRLERERRMLIITGPNMGGKSTYMRQTALIVLLAHIGAFVP 655
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + RSL++MDE+GR TS+
Sbjct: 656 ADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLMDEIGRGTST 715
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C E L S + AYT+FA+H L+ L + + +H V + + F
Sbjct: 716 YDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMSGLANVHLDAVEHGDTIAFMHA 775
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++G YGL +A +AG+P +VI+ AR
Sbjct: 776 VQEGAASR-SYGLQVAALAGVPKSVIQQAR 804
>gi|399545598|ref|YP_006558906.1| DNA mismatch repair protein mutS [Marinobacter sp. BSs20148]
gi|399160930|gb|AFP31493.1| DNA mismatch repair protein mutS [Marinobacter sp. BSs20148]
Length = 875
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 170/573 (29%), Positives = 280/573 (48%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLEI L + GT + +L ++ T T G R LR L +PL+D+ +
Sbjct: 270 MDAASRRNLEIDTNL---MGGT---QYTLAWVMDRTATAMGGRQLRRWLNRPLRDVAVVR 323
Query: 63 TRLDCLDELMSN-------EQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDN 115
R + L+ + +QL K + +R+L + +
Sbjct: 324 QRQQAVSALLKDFDCEPIHDQL---------KSIGDIERILARVALRSARP--------- 365
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVI 175
I L+ A LP L K L S + + ++ E + A + R +I
Sbjct: 366 --------RDIARLRDAFAVLPDLQKSLAMVDSTHVGQLATTIGEYPQLADLLGRA--II 415
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
D P V R + I G D LD R + + + ++ + ++ + LK
Sbjct: 416 DNP------PVVIR--EGGVIADGFDAELDDLRNISENAGQYLLDVETREKQRTGISTLK 467
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +N G+Y+ I + P+ +I+ N T EL + SA R
Sbjct: 468 VGYNRVHGYYIEISRLQ-SAQAPADYIRRQTLKNAERFITPELKEFEDKALSAKSRALAR 526
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ + +++ + +++ L A+ L LD++ N FA S+ R P F++ L
Sbjct: 527 EKALWDEVLETVAAELAPLQDAAQALAELDVLSN-FAERASSL---RLCAPQFSDEPGLQ 582
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+ GRHP++E + +D F+PNN+ I M+++TGPNM GKSTY++QV LI +LA G +
Sbjct: 583 IEEGRHPVVEQLLDDPFVPNNLLIDAKRRMLVITGPNMGGKSTYMRQVALIALLAYTGSF 642
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + VDRIFTRMG+ D++ STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 643 VPADSAVLGPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATKHSLVLMDEVGRGT 702
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E+L + YT+FA+H L++LA + +H ++ + F
Sbjct: 703 STFDGLSLAWATAEYLARDILCYTLFATHYFELTQLADELEHAVNVHLTATEHDDSIVFL 762
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+ +GP YGL +A++AG+P VI A++
Sbjct: 763 HNVHEGPAS-QSYGLQVAKLAGVPLEVIRNAKA 794
>gi|434391871|ref|YP_007126818.1| DNA mismatch repair protein MutS [Gloeocapsa sp. PCC 7428]
gi|428263712|gb|AFZ29658.1| DNA mismatch repair protein MutS [Gloeocapsa sp. PCC 7428]
Length = 852
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 184/589 (31%), Positives = 297/589 (50%), Gaps = 68/589 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLEI + + GT + SL L T T G R LR LQPL DI+ I+
Sbjct: 292 LDHQSRRNLEITQTVRD---GTFHG--SLLWALDRTSTAMGGRALRRWFLQPLIDIKGIH 346
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D ++EL+ + L L LR+ + +++T + A
Sbjct: 347 ARQDTIEELIEDSSLRQDLRSCLRQI------------YDLERLTGR------AGSGSAN 388
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDEDVL 180
++ L +L LP +A++++ A+S L + + +V E E A +R + E
Sbjct: 389 ARDLVALADSLARLPEIARIVETARSPYLRALQKVPAVLE-ELAAKLRNYLVES------ 441
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + ++ I+ G+ LD R + + + NL + R + ++P LK+ +N
Sbjct: 442 ----PPILLSEGGL-IRPGVHSQLDERRTTVEADQQWIANLEVEERLKTEIPTLKVGYNK 496
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGE---- 291
G+Y+SI ++P +I+ N T EL LN R+ E
Sbjct: 497 TFGYYISISRSKAD-QVPQHYIRKQTLTNEERYITPELKERESRILNARDDLNRLEYEVF 555
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
+R+E+ A + IR ++S A+VLC L + Y RP E
Sbjct: 556 AQLRSEVAEHA--ELIR-NISRAVAAADVLCGLAEVAV----------YQGYCRPEMVEG 602
Query: 352 GPLAIDGGRHPILESI--HNDFIPNNIFIS----EAANMVIVTGPNMSGKSTYLQQVCLI 405
+ I GRHP++E F+PN+ F+ ++ +++I+TGPN SGKS YL+QV LI
Sbjct: 603 REIHIVDGRHPVVEQSLPAGFFVPNSTFLGSSDDQSPDLIILTGPNASGKSCYLRQVGLI 662
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
++AQ+G +VPA + + + DRIFTR+G VD+L + STFM EM ETA ++ + + RSL+
Sbjct: 663 QLMAQVGSFVPASSARLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATRRSLV 722
Query: 466 VMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
++DE+GR T++ DG +IAW+ E+L + ++A TIFA+H L+ELA+I NV V
Sbjct: 723 LLDEIGRGTATFDGLSIAWAVAEYLATEIQARTIFATHYHELNELASILTNVANYQVTVK 782
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++ F Q++ G YG+ +AGLP+ VI+ A+ + +I K
Sbjct: 783 ELPDQIIFLHQVQPGGAD-KSYGIEAGRLAGLPTVVIQRAKQVMGQIEK 830
>gi|152983937|ref|YP_001346903.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa PA7]
gi|452877931|ref|ZP_21955176.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa VRFPA01]
gi|166232126|sp|A6V1G8.1|MUTS_PSEA7 RecName: Full=DNA mismatch repair protein MutS
gi|150959095|gb|ABR81120.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa PA7]
gi|452185368|gb|EME12386.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa VRFPA01]
Length = 855
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 170/586 (29%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 266 LDGASRRNLELDINL------SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 363 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 415 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 471 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 530 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+PS VI+ AR + +KR+E L ++
Sbjct: 766 SQ-SYGLAVAQLAGVPSPVIQRAR--------EHLKRLETTSLPHE 802
>gi|423208041|ref|ZP_17194595.1| DNA mismatch repair protein mutS [Aeromonas veronii AER397]
gi|404619677|gb|EKB16586.1| DNA mismatch repair protein mutS [Aeromonas veronii AER397]
Length = 863
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 282/570 (49%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L + +L +L T T G+RLL+ + QP++D +
Sbjct: 281 MDAATRRNLELTQNL------AGGYENTLAEVLDRTATPMGSRLLKRWIHQPIRDRVILK 334
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R + EL+ + L+ L LR+ + +RVL + P+ +T
Sbjct: 335 GRQSTIKELI-EQNLYDELGNLLRQV-GDVERVLARLALRSARPRDLTR----------- 381
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ A LP L ++L D N + +V + + AS + ++++ V
Sbjct: 382 ---------LRQAFAQLPELQRLLAD-------NEHEAVQQLAERASTFPELLDLLERAV 425
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ VP V + I+ G + LD R + ++ + + + + LK+ +N
Sbjct: 426 ME--VPPVL-IRDGGVIRDGFNQELDELRDLANGATASLARIEEREKLLTGINTLKVGYN 482
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GFY+ + + +P+ +I+ NN EL + +A + +
Sbjct: 483 KVHGFYIEVSRANSH-LVPAHYIRRQTLKNNERYIIDELKKYEDKVLTAQSQALALEKRL 541
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAID 357
E L+DA+ + L A L LD++ N A T+ Y P + + I+
Sbjct: 542 YEELLDALLPHLGDLQDSAAALAELDVLANLAERAETLD------YRCPTLIDEDQILIE 595
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D FI N I + M+I+TGPNM GKSTY++Q LIV+LA IG +VP
Sbjct: 596 AGRHPVVEQVMTDPFIANPIRLERERRMLIITGPNMGGKSTYMRQTALIVLLAHIGAFVP 655
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + RSL++MDE+GR TS+
Sbjct: 656 ADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLMDEIGRGTST 715
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C E L S + AYT+FA+H L+ L + + +H V + + F
Sbjct: 716 YDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMSGLANVHLDAVEHGDTIAFMHA 775
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++G YGL +A +AG+P +VI+ AR
Sbjct: 776 VQEGAASR-SYGLQVAALAGVPKSVIQQAR 804
>gi|317504405|ref|ZP_07962387.1| DNA mismatch repair protein MutS [Prevotella salivae DSM 15606]
gi|315664477|gb|EFV04162.1| DNA mismatch repair protein MutS [Prevotella salivae DSM 15606]
Length = 886
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 188/582 (32%), Positives = 298/582 (51%), Gaps = 64/582 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D ++R+LE+I P+ SL +++ T T G R+LR L+ PLKD+
Sbjct: 279 VRLDRFTIRSLELIAPMQE-------DGSSLLNVIDRTVTAMGGRMLRRWLVFPLKDVAP 331
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD +D FF F R+ E H +++ SKV +
Sbjct: 332 IKERLDIVD-------YFFQKPSF-RQLVDEQ----LHRVGDLERIVSKV------AVGR 373
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDED 178
I+ LK ALDA+ + + +++ L + ++CE SI+ RI + I D
Sbjct: 374 VSPREIVQLKNALDAVRPIKEACLYSENEALKRVGEQLNLCE-----SIKTRIEKEIQPD 428
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
VA+ I G + LD R + + + + E + +LK+ F
Sbjct: 429 PPQ----LVAKGD---VIADGYNKELDELRTMRRNGKDYLLKIQEDEAEATGILSLKVGF 481
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECY 293
NN G+YL + + K+P T+I+ T EL L K A E
Sbjct: 482 NNVFGYYLEV-RNTFKNKVPETWIRKQTLAQAERYITPELKEYEEKILGADEKIMALEAR 540
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+ E+ L A+ D I + TLLA V CLL SFA IS + + Y RP ++
Sbjct: 541 LFNELVL-AMQDFIPQIQINATLLARVDCLL-----SFAK-ISEE--NTYIRPQIDDSDV 591
Query: 354 LAIDGGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
L I GRHP++E+ I ++PN++++ ++ ++++TGPNM+GKS L+Q LIV+LA
Sbjct: 592 LDIRQGRHPVIETQLPIGEHYVPNDVYLDTQKQQVMMITGPNMAGKSALLRQTALIVLLA 651
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+GC+VPA ++I +VD+IFTR+G DNL STFM EM E A ++ NVS RSL++ DE
Sbjct: 652 QVGCFVPAERASIGLVDKIFTRVGASDNLSLGESTFMVEMTEAANILNNVSPRSLVLFDE 711
Query: 470 LGRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
LGR TS+ DG +IAW+ E+L +A T+FA+H L+E+ + +K + V
Sbjct: 712 LGRGTSTYDGISIAWAIVEYLHEQAKARARTLFATHYHELNEMEKNFVRIKNYNVSVKEV 771
Query: 527 NNRLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ ++ F +L + G H +G+ +AE+AG+P ++++ A +I
Sbjct: 772 DGKVIFLRKLMRGGSEH--SFGIHVAEIAGMPRSIVKRANTI 811
>gi|407686680|ref|YP_006801853.1| DNA mismatch repair protein MutS [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407290060|gb|AFT94372.1| DNA mismatch repair protein MutS [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 873
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 283/570 (49%), Gaps = 50/570 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ L + ++ +LF ++ TT T G+R+L+ + PL D
Sbjct: 255 VQLDAATRRNLELTHNL------SGGQENTLFSVMDTTTTAMGSRMLQRVIHSPLTDQHE 308
Query: 61 INTRLDCLDELMSN--EQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
+++RLD ++ +++ E + L K + +R++ + + D A+
Sbjct: 309 LHSRLDAVETFINDDPEDIRTAL-----KHIGDIERIMARLALRSARPR------DFAR- 356
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCEN-EKYASIRKRIGEVIDE 177
LK A +ALP L+DA + RS+ E Y ++ + + I +
Sbjct: 357 ----------LKNAFNALP----DLQDALARFDTGQIRSISETIGTYPELQALLNDAIID 402
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P V R A G + LD R+ ++ + + + RE + LK+
Sbjct: 403 NP-----PVVIRDGGVIA--EGYNAELDELRKLSQGATDYLDAMEQRERERTGISTLKVG 455
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N GF++ I + P+ +I+ N T EL + S+ G +
Sbjct: 456 YNKVHGFFIEISRAN-SALAPAEYIRRQTLKNTERYITPELKEHEDKVLSSQGAALALEK 514
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
EAL D ++ L A L LD++ +S +D Y RPH ++ L D
Sbjct: 515 QLYEALFDNFAPHLNNLIETAAALAKLDVLCCFAERAVS---LDWY-RPHLSQECALTYD 570
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E++ D FI N + + M+I+TGPNM GKSTY++Q LI +LA IG +VP
Sbjct: 571 AGRHPVVENVMKDPFIANPLQLDTERRMLIITGPNMGGKSTYMRQTALIALLACIGSFVP 630
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+
Sbjct: 631 AENAHIGKLDRIFTRIGASDDLASGRSTFMVEMTETANILNNATENSLVLMDEIGRGTST 690
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C +L L AYT+FA+H L+EL V +H + + + F
Sbjct: 691 YDGLSLAWACASYLAKQLNAYTLFATHYFELTELPETQSGVVNVHLDAMEFEDTIRFMHT 750
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+ +G +GL +A++AG+P VI+ A+
Sbjct: 751 VSEGAAS-KSFGLQVAQLAGVPKAVIKAAQ 779
>gi|311745087|ref|ZP_07718872.1| DNA mismatch repair protein MutS [Algoriphagus sp. PR1]
gi|126577600|gb|EAZ81820.1| DNA mismatch repair protein MutS [Algoriphagus sp. PR1]
Length = 868
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 173/581 (29%), Positives = 298/581 (51%), Gaps = 54/581 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++RNLE++ P H G L +L T T G+R+++ ++ PLK+ I
Sbjct: 269 LDKFTIRNLELVYPQHEG--GVP-----LIQILDQTVTPMGSRMMKKWMVLPLKEKTAIE 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL+ +D F+ S + + E L H + ++ V+ N ++
Sbjct: 322 ERLNVVD-------FFYQNSTLIEEIVSE----LKHIGDLERLISKVVVGRANPRE---- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDEDVL 180
I +K AL A+ + ++LK + L + ++CE + ++I + ED
Sbjct: 367 ---INQIKKALKAIIPIKEMLKGQDNPTLKRLSDQLNLCE-----YLLEKIENELKEDA- 417
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + T Q IK G+D LD R + + L + + + +LK+ FN
Sbjct: 418 ----PML--THQGGIIKDGVDDELDEYRNLANSGKDFLVQLQQREVKNTGITSLKIAFNK 471
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+YL + H + K+P +I+ N T EL + +A +
Sbjct: 472 VFGYYLEVTHAH-KDKVPQEWIRKQTLVNAERYITPELKEYEEKILNAEERLVGLEQKYF 530
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
LV + V+ + A ++ +D+++ SFA T + Y+RP ++ L GR
Sbjct: 531 LELVQEAAKYVTQIQQNARIIGTMDVLL-SFAQIALT---NDYSRPKISDTETLEYKDGR 586
Query: 361 HPILE---SIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
HP++E S +++PN++++ ++ ++I+TGPNM+GKS L+Q LIV++AQ+G +VP
Sbjct: 587 HPVIERQLSPGENYVPNDVYLDHDSQQIMIITGPNMAGKSALLRQTALIVLMAQMGSFVP 646
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A F+ + ++D++FTR+G DNL STFM EM ETA ++ N+S RSL++MDE+GR TS+
Sbjct: 647 ASFARVGIIDKVFTRVGASDNLSKGESTFMVEMTETASILNNLSSRSLVLMDEIGRGTST 706
Query: 477 SDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
DG +IAWS E+L + KA T+FA+H L++L +P +K + V N++ F
Sbjct: 707 YDGISIAWSIVEYLHNHTTFKAKTLFATHYHELNQLTEDFPKIKNFNVSVKEVGNKVIFM 766
Query: 534 FQLK-DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+LK G H +G+ +A++AG+P+ V+ A I + + K
Sbjct: 767 RKLKPGGSEH--SFGIHVAQMAGMPNPVVLRAAEIMAHLEK 805
>gi|407699111|ref|YP_006823898.1| DNA mismatch repair protein MutS [Alteromonas macleodii str. 'Black
Sea 11']
gi|407248258|gb|AFT77443.1| DNA mismatch repair protein MutS [Alteromonas macleodii str. 'Black
Sea 11']
Length = 873
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 283/570 (49%), Gaps = 50/570 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ L + ++ +LF ++ TT T G+R+L+ + PL D
Sbjct: 255 VQLDAATRRNLELTHNL------SGGQENTLFSVMDTTTTAMGSRMLQRVIHSPLTDQHE 308
Query: 61 INTRLDCLDELMSN--EQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKK 118
+++RLD ++ +++ E + L K + +R++ + + D A+
Sbjct: 309 LHSRLDAVETFINDDPEDIRTAL-----KHIGDIERIMARLALRSARPR------DFAR- 356
Query: 119 SQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCEN-EKYASIRKRIGEVIDE 177
LK A +ALP L+DA + RS+ E Y ++ + + I +
Sbjct: 357 ----------LKNAFNALP----DLQDALARFDTGQIRSISETIGTYPELQALLNDAIID 402
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P V R A G + LD R+ ++ + + + RE + LK+
Sbjct: 403 NP-----PVVIRDGGVIA--EGYNAELDELRKLSQGATDYLDAMEQRERERTGISTLKVG 455
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N GF++ I + P+ +I+ N T EL + S+ G +
Sbjct: 456 YNKVHGFFIEISRAN-SALAPAEYIRRQTLKNTERYITPELKEHEDKVLSSQGAALALEK 514
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
EAL D ++ L A L LD++ +S +D Y RPH ++ L D
Sbjct: 515 QLYEALFDNFAPHLNNLIETAAALAKLDVLCCFAERAVS---LDWY-RPHLSQECALTYD 570
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E++ D FI N + + M+I+TGPNM GKSTY++Q LI +LA IG +VP
Sbjct: 571 AGRHPVVENVMKDPFIANPLQLDTERRMLIITGPNMGGKSTYMRQTALIALLACIGSFVP 630
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+
Sbjct: 631 AENAHIGKLDRIFTRIGASDDLASGRSTFMVEMTETANILNNATENSLVLMDEIGRGTST 690
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C +L L AYT+FA+H L+EL V +H + + + F
Sbjct: 691 YDGLSLAWACASYLAKQLNAYTLFATHYFELTELPETQSGVVNVHLDAMEFEDTIRFMHT 750
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+ +G +GL +A++AG+P VI+ A+
Sbjct: 751 VSEGAAS-KSFGLQVAQLAGVPKAVIKAAQ 779
>gi|430809297|ref|ZP_19436412.1| DNA mismatch repair protein MutS [Cupriavidus sp. HMR-1]
gi|429498257|gb|EKZ96769.1| DNA mismatch repair protein MutS [Cupriavidus sp. HMR-1]
Length = 869
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 178/574 (31%), Positives = 285/574 (49%), Gaps = 54/574 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D+ + RNLE+ E L GT + +LF +L T T G+R LR L PL+D
Sbjct: 255 VGLDSATRRNLELTETLR----GTESP--TLFSLLDTCATTMGSRALRHWLHHPLRDPAL 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
R + L++ Q GL LRK + +R+ ++++ D+ + + +
Sbjct: 309 PRARQQAIGALIT--QGPDGLRTVLRKL-ADVERITARLAL----LSARPRDLSSLRDTL 361
Query: 121 TLISSIILLKTALDALPLLAKVLK--DAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+ + + + PLLA+ L+ D L + R+V +E IR G VI
Sbjct: 362 RALPDVQAATVSSEDAPLLAQTLEEIDIPQDCLELLIRAVA-DEPSTVIRD--GGVI--- 415
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
AR G DG LD R + + + +L + RE + NL++ +
Sbjct: 416 ---AR---------------GYDGELDELRDISENCGQFLIDLETRERERTGITNLRVEY 457
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N GFY+ + + K+P + + N T EL + + SA R +
Sbjct: 458 NRVHGFYIEVTNGQAD-KVPDDYRRRQTLKNAERYITPELKAFEDKALSAQDRALAREKQ 516
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ L+ A+ + L +A L LD++ + A T +D + +P + I
Sbjct: 517 LYDGLLQALLPHIGSLRRVAGALARLDVLA-TLAERAKT--LD-WVQPERVHENVIDISQ 572
Query: 359 GRHPIL------ESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
GRHP++ ESI FI N+ ++EA ++++TGPNM GKST+++Q LIV+LA +G
Sbjct: 573 GRHPVVEGQLAAESIA--FIANDCQLNEARKLLLITGPNMGGKSTFMRQTALIVLLACVG 630
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I VDRIFTR+G D+L STFM EM E A ++ N + SL++MDE+GR
Sbjct: 631 AWVPARRAVIGPVDRIFTRIGAADDLAGGRSTFMVEMTEAAAILHNATPSSLVLMDEIGR 690
Query: 473 ATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TS+ DG A+AW+ HLLS +++T+FA+H L++L +P +H V + +
Sbjct: 691 GTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLPVEFPQAANVHLSAVEHGDGIV 750
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
F ++DGP YGL +A++AG+P VI AR
Sbjct: 751 FLHAVQDGPASQ-SYGLQVAQLAGVPQPVIRAAR 783
>gi|338212088|ref|YP_004656143.1| DNA mismatch repair protein mutS [Runella slithyformis DSM 19594]
gi|336305909|gb|AEI49011.1| DNA mismatch repair protein mutS [Runella slithyformis DSM 19594]
Length = 901
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 177/589 (30%), Positives = 297/589 (50%), Gaps = 44/589 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++RNLE++ P G L +L T T G RLLR L+ PLKD I
Sbjct: 276 LDRFTIRNLELVYPQQEG--GVP-----LIQILDQTVTPMGARLLRKWLVLPLKDKAPIE 328
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
RL ++ + NE+L ++ L++ + +R++ + P+++ KKS
Sbjct: 329 ERLQTVEFFLQNEELLDEITLHLKQI-GDLERLISKVAVRRINPRELL-------QLKKS 380
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ I+ + L + K D+ + SV + +RK ++ +
Sbjct: 381 LSHIAPVKELLQKAWSDEAKGKGAPDSNE---SETPASVSPSSSLTPLRKYADQLNPCEF 437
Query: 180 LHARVPFVAR------TQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
L ++ R T Q IK GID LD+ + + + + N+ E + +
Sbjct: 438 LLEKIETELREDPPVVTNQGGMIKSGIDADLDVLHKLAFSGKDYLIQIQNREIERTGITS 497
Query: 234 LKLPFNNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
LK+ +N G+YL + HK+ ++P+ +I+ N T EL + SA +
Sbjct: 498 LKIAYNKVFGYYLEVTNSHKN---RVPAEWIRKQTLVNAERYITPELKEYEDKILSAEDK 554
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
+ + LV + V+ + A V+ +LD + SFA + Y +P TE+
Sbjct: 555 IFAIEQRIFNDLVMTANDYVAAVQQDARVVSVLDALA-SFARVARK---NNYNKPKITED 610
Query: 352 GPLAIDGGRHPILES---IHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVI 407
L I GRH ++E + ++PN++++ E ++I+TGPNM+GKS L+Q LIV+
Sbjct: 611 KSLKIKEGRHAVIEQQLPLGESYVPNDLYLDDETQQIIIITGPNMAGKSALLRQTALIVL 670
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+G +VPA + I +VD+IFTR+G DNL STFM EM ETA ++ N+SERSL++M
Sbjct: 671 MAQMGSFVPAAEAEIGLVDKIFTRVGASDNLSRGESTFMVEMTETASILNNLSERSLVLM 730
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAWS E L + +A T+FA+H L++LA +P +K + V
Sbjct: 731 DEIGRGTSTYDGVSIAWSIAEFLHNHPRHRAKTLFATHYHELNQLADDFPRIKNFNVAVK 790
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
N++ F +LK+G +G+ +A++AG+P ++ + I + K
Sbjct: 791 EVGNKVIFLRKLKEGGSE-HSFGIHVAQMAGMPQEIVLRSNDILHSLEK 838
>gi|448346333|ref|ZP_21535219.1| DNA mismatch repair protein MutS, partial [Natrinema altunense JCM
12890]
gi|445632922|gb|ELY86128.1| DNA mismatch repair protein MutS, partial [Natrinema altunense JCM
12890]
Length = 874
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 173/591 (29%), Positives = 295/591 (49%), Gaps = 64/591 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA ++R+LE+ EP + G + +L +L T + G R LR L +PL D I
Sbjct: 266 LDAVALRSLELFEP--RTVHGRDDA--TLVGVLDETASALGGRTLRNWLRRPLLDPARIE 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + EL S Q L LR+ + +++ ++ + +
Sbjct: 322 ARHDAVAELKSAVQRRERLHDRLRE------------VYDLERLIGRI------SRERAN 363
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGE-VIDEDVLH 181
+ L+ L +P + +L DA L ++Y ++ + +R+ I + V+DE
Sbjct: 364 ARDLCSLRETLAVVPEIRDLLADADCERLRDLYEAL---DPLVDVRELIADAVVDE---- 416
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
P + T+ I G D LD R + D + + +L + RE + +LK+ N+
Sbjct: 417 ---PPIEITEGGI-IATGYDDALDDLRGTARDGKQWIDDLEERERERTGIDSLKVGHNSV 472
Query: 242 QGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL-----ELASLNVRNKSAAGE--C 292
G+Y+ + + +++ +P + Q +K+ L E+ R E C
Sbjct: 473 HGYYIEVTNPNLE-SVPDNYQRRQTLKNSERFVTPKLKDREDEIVGAQQRADEREYELFC 531
Query: 293 YIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN- 351
+R E+ E V + LA+ + LD +V S A T++ + Y RP E+
Sbjct: 532 EVRREVAAE---------VERVQRLADAIATLDALV-SLA-TVAAQY--DYCRPEMLEHD 578
Query: 352 ---GP-LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
GP + I+GGRHP++E F+PN+ ++ + ++TGPNMSGKSTY++QV IV+
Sbjct: 579 GRAGPVIDIEGGRHPVVERTQESFVPNDAHLTSDRRLAVITGPNMSGKSTYMRQVAQIVL 638
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
LAQ+G +VPA + + V+R+FTR+G D++ STFM EM E A +++ ERSL+++
Sbjct: 639 LAQVGSFVPARAARLTPVERVFTRVGASDDIAGGRSTFMVEMDELATILREADERSLVLL 698
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
DE+GR TS++DG AIA + EHL + A T+FA+H L+ELA LHF V
Sbjct: 699 DEVGRGTSTADGMAIAQAITEHLHDEVGATTLFATHHHPLTELAEDLAAAFTLHFEVDQD 758
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
+ + F ++ G YG+ +A AG+P V++ +R + + +++++
Sbjct: 759 DGEVVFHHEIAPGA-ATGSYGVEVATAAGVPDPVVDRSRELVADAAEEDLE 808
>gi|330831306|ref|YP_004394258.1| Msh-like protein [Aeromonas veronii B565]
gi|328806442|gb|AEB51641.1| Msh-like protein [Aeromonas veronii B565]
Length = 863
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 282/570 (49%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L + +L +L T T G+RLL+ + QP++D +
Sbjct: 281 MDAATRRNLELTQNL------AGGYENTLAEVLDRTATPMGSRLLKRWIHQPIRDRVILK 334
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R + EL+ + L+ L LR+ + +RVL + P+ +T
Sbjct: 335 GRQSTIKELI-EQNLYDELGSLLRQV-GDVERVLARLALRSARPRDLTR----------- 381
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ A LP L ++L D N + +V + + AS + ++++ V
Sbjct: 382 ---------LRQAFAQLPELQRLLAD-------NEHEAVQQLAERASTFPELLDLLERAV 425
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ VP V + I+ G + LD R + ++ + + + + LK+ +N
Sbjct: 426 ME--VPPVL-IRDGGVIRDGFNQELDELRDLANGATASLARIEEREKLLTGINTLKVGYN 482
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GFY+ + + +P+ +I+ NN EL + +A + +
Sbjct: 483 KVHGFYIEVSRANSH-LVPAHYIRRQTLKNNERYIIDELKKYEDKVLTAQSQALALEKRL 541
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAID 357
E L+DA+ + L A L LD++ N A T+ Y P + + I+
Sbjct: 542 YEELLDALLPHLGDLQDSAAALAELDVLANLAERAETLD------YRCPTLIDEDQIIIE 595
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D FI N I + M+I+TGPNM GKSTY++Q LIV+LA IG +VP
Sbjct: 596 AGRHPVVEQVMTDPFIANPIRLERERRMLIITGPNMGGKSTYMRQTALIVLLAHIGAFVP 655
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + RSL++MDE+GR TS+
Sbjct: 656 ADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLMDEIGRGTST 715
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C E L S + AYT+FA+H L+ L + + +H V + + F
Sbjct: 716 YDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMSGLANVHLDAVEHGDTIAFMHA 775
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++G YGL +A +AG+P +VI+ AR
Sbjct: 776 VQEGAASR-SYGLQVAALAGVPKSVIQQAR 804
>gi|409426369|ref|ZP_11260924.1| DNA mismatch repair protein MutS [Pseudomonas sp. HYS]
Length = 855
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 169/570 (29%), Positives = 281/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + +L ++ +T G+RLL L +PL+D++ +
Sbjct: 266 LDGASRRNLELDVNL------AGGRDNTLQSVIDRCQTAMGSRLLTRWLNRPLRDLKVLQ 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQGSIRCLLDGYR-FEKLQPQLKEI-GDIERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + A + + +ID
Sbjct: 363 --DLARLRDALGALPELQSAMAELEAPHLARLAAIAGTYPELADLLAKA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKTGYDSELDELLAMSENAGQFLIDLEAREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P K + + P+ +I+ T EL + + SA R ++ +A
Sbjct: 471 GYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKTFEDKALSAKSRALAREKMLYDA 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ P F + + I GRHP
Sbjct: 530 LLENLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPSFVDEPCMRISQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV++A IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLALDDNTRMLVITGPNMGGKSTYMRQTALIVLMAHIGSFVPAAACE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+PS VI+ AR R+
Sbjct: 766 SQ-SYGLAVAQLAGVPSPVIQRAREHLGRL 794
>gi|359799445|ref|ZP_09302006.1| DNA mismatch repair protein MutS [Achromobacter arsenitoxydans SY8]
gi|359362549|gb|EHK64285.1| DNA mismatch repair protein MutS [Achromobacter arsenitoxydans SY8]
Length = 880
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 179/605 (29%), Positives = 281/605 (46%), Gaps = 66/605 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+ + L +LF +L +T G+RLLR L PL++ +
Sbjct: 272 LDPVTRRNLELTQTL------AGEDSPTLFSLLDGCRTPMGSRLLRRWLHHPLRENDQAL 325
Query: 63 TRLDCLDELMSN----EQLF--FGLSQFLR----KFPKETDRVLCHFCFK---PKKVTSK 109
R + L++ EQ F G+ + LR FP + +R+ + P+++ S
Sbjct: 326 ARQQAISALIAGRMDVEQTFGSAGVLEALRTALNAFP-DIERIAARLALRSVRPRELAS- 383
Query: 110 VLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKD-AQSFLLANIYRSVCENEKYASIR 168
L+ AL ALP LA +++ A S + + + + A++
Sbjct: 384 -------------------LRDALQALPALADLVEPMAASPRIGELVSHLSVDPALAALL 424
Query: 169 KRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREE 228
R A P VA + + G D LD R D + + L + RE
Sbjct: 425 VRA---------IAAEPAVA-IRDGGVLAAGFDAELDELRGLAADGGDFLVQLEARERER 474
Query: 229 LKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSA 288
+ NL++ FN GFY+ + K K+P + + N T EL + + SA
Sbjct: 475 TGISNLRVEFNRVHGFYIEV-TKGQTAKVPEDYRRRQTLKNAERYITPELKTWEDKVLSA 533
Query: 289 AGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
R + E L+D + E V L+ A L LD + H + P
Sbjct: 534 QDRSLAREKWLFEQLLDVLAEHVRPLSDCAAALAELDTLAALAEHAQRHD----WIAPEL 589
Query: 349 TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
+E + I+ GRHP++E F PN + A M+++TGPNM GKSTY++QV LIV+L
Sbjct: 590 SEQADIDIEAGRHPVVERAIERFTPNGCRLDPARRMLLITGPNMGGKSTYMRQVALIVLL 649
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
A+IG +VPA + I +DRIFTR+G D+L STFM EM E A ++ + SL++MD
Sbjct: 650 ARIGSFVPASRARIGRIDRIFTRIGAADDLAGGRSTFMMEMTEAAAILSASTPNSLVLMD 709
Query: 469 ELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS+ DG A+AW+ LLS +A T+FA+H L+ L P +H
Sbjct: 710 EIGRGTSTYDGLALAWAIACRLLSHNRALTLFATHYFELTRLPAEQPASANVHLAAAESA 769
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
+ F ++++GP YG+ +A+ AG+P+ VI R +E++R+E
Sbjct: 770 GGIVFLHEVREGPASR-SYGIQVAQRAGVPAAVI--------RQATRELERLEAQGAPTP 820
Query: 588 QIQML 592
Q+ +
Sbjct: 821 QLGLF 825
>gi|348589971|ref|YP_004874433.1| DNA mismatch repair protein MutS [Taylorella asinigenitalis MCE3]
gi|347973875|gb|AEP36410.1| DNA mismatch repair protein MutS [Taylorella asinigenitalis MCE3]
Length = 872
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 172/599 (28%), Positives = 295/599 (49%), Gaps = 43/599 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D + +NLE+ E L +S+K +LF L +T G+RLLR + PLK+
Sbjct: 269 LGLDPFTRKNLELTESL------SSSKGPTLFSTLDNCETGMGSRLLRNWIHNPLKNNSE 322
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN R + + + F +SQ L+ + KP + D++
Sbjct: 323 INERQTNVSQFLQPTNEEFSISQILKNLKDQ---------LKP------ITDIERLSSRV 367
Query: 121 TLIS----SIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
+++ + L+ +L L ++ K FLL N Y ++ N + + + E +
Sbjct: 368 AMLTIKPKELAKLRDSLHTLEVVRK-------FLLEN-YGNLSINLECIPKAEELKEYLS 419
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
+ + A P + + I G D LD R + + + K +E + L++
Sbjct: 420 KAI--ATEP-STQIRDGGVIAEGFDSELDDLRNTSSNNGSFLLEYETKLKEATGISLLRV 476
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N QGF++ IP + +P TF + N +T EL + SA R
Sbjct: 477 VYNRVQGFFIEIPKSRAE-NVPDTFRRKQTLKNVERFTTPELKQWEDKILSADERALKRE 535
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ + ++ I+ VS+L +A+++ +D+ H + + + +P E +AI
Sbjct: 536 KYLYDEILQNIQIWVSLLQDIAKLVASIDVYSALAYHAYN----NNWIKPELVEGTSIAI 591
Query: 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
+ GRHP++E F N+ F++ M I+TGPNM GKSTY++Q +IV+LA++G YVP
Sbjct: 592 EQGRHPVVERTIEKFTANDCFLNSENRMQIITGPNMGGKSTYMRQTAIIVLLARMGSYVP 651
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++I VD IFTR+G D+L STFM EM E A ++ N + SL++MDE+GR TS+
Sbjct: 652 AESASIGEVDAIFTRIGASDDLAGGRSTFMVEMIEAASILTNSTNASLVLMDEIGRGTST 711
Query: 477 SDGFAIAWS-CCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ C L K+ T+FA+H L+ L Y + +H V ++ L F +
Sbjct: 712 YDGLSLAWAIACRLLNHNKSLTLFATHYFELTRLVDEYKGIANVHLSAVETSDGLVFMHE 771
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYH 594
+ DGP + YG+ +A+ AGLP VI+ A+++ R+ + +M++ Q I + +
Sbjct: 772 VHDGPAN-KSYGIQVAQKAGLPMAVIKQAQNVLERLNQSNSSQMDLFDTQVSDIDVSFE 829
>gi|429761467|ref|ZP_19293892.1| DNA mismatch repair protein MutS [Anaerostipes hadrus DSM 3319]
gi|429183720|gb|EKY24761.1| DNA mismatch repair protein MutS [Anaerostipes hadrus DSM 3319]
Length = 875
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 184/604 (30%), Positives = 303/604 (50%), Gaps = 57/604 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID++S RNLE+ E L KK SL +L TKT G R+LR + QPL D +
Sbjct: 270 MIIDSSSRRNLELCETLRD-----KQKKGSLLWVLDKTKTAMGARMLRNMVEQPLVDKKK 324
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D + L + L ++L + +R++ +K T+ D
Sbjct: 325 IEERYDAITTLTDQTIVREELREYLNPI-YDLERLMTKVSYK----TANPRD-------- 371
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I KT+L+ LP + VL++ + LL+ + + E ++ ED +
Sbjct: 372 -----MIAFKTSLELLPAIKTVLEECKDPLLSGLREDLDPLEDIHNLL--------EDSI 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK G +D +R+ + + + L + RE+ + NLK+ FN
Sbjct: 419 IEEPPLAIK--EGGIIKEGFKEDIDKLKRAKTEGKQWLMELEEREREKTGIKNLKIKFNK 476
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + +KD+ +P +I+ N+ +T EL L + Y
Sbjct: 477 VFGYYLDVTNSYKDL---VPDYYIRKQTLANSERYTTEELNQLADTILGSEDRLYALEYE 533
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ + + ++ ++ A V+ +D + S A+ + + RP G + I
Sbjct: 534 TYVMIRETLAGEMERISRTANVIAQIDALA-SLAYVAER---NHFVRPKLNVRGTIDIKD 589
Query: 359 GRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E I ND FI N+ ++ N V I+TGPNM+GKSTY++QV LIV++AQIG +V
Sbjct: 590 GRHPVVEQVIPNDMFISNDTYLDNKKNRVAIITGPNMAGKSTYMRQVALIVLMAQIGSFV 649
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +VDRIFTR+G D+L S STFM EM E A +++N ++ SL+++DE+GR TS
Sbjct: 650 PAAKANIGIVDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATKNSLLILDEIGRGTS 709
Query: 476 SSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFY-VVIRNNRLD 531
+ DG +IAW+ E++ + L A T+FA+H L+EL + +H Y + ++ D
Sbjct: 710 TFDGLSIAWAVVEYISNSKLLGAKTLFATHYHELTELEG---KIDSVHNYCIAVKEQGDD 766
Query: 532 FKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
F +K G YG+ +A++AG+P VI A+ I + + ++ + + Y +
Sbjct: 767 IVFLRKIVKGGADK--SYGVQVAKLAGVPDAVINRAKEIARELEEHDLTSGAKDIMPYGE 824
Query: 589 IQML 592
Q L
Sbjct: 825 AQQL 828
>gi|399006214|ref|ZP_10708742.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM17]
gi|398122673|gb|EJM12259.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM17]
Length = 859
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 173/573 (30%), Positives = 284/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D++ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLKVLQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + CL + E+L L + + +R+L + NA+
Sbjct: 324 ARQTSIGCLLDGYRFERLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL LP L + + ++ L+ + + + A++ ++ +ID
Sbjct: 367 -----DLARLRDALAVLPELQVAMTELEAEHLSQLAVTTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + + SA R ++
Sbjct: 472 RIHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 531 YEALLETLIGHLPPLQDTAGALAELDVLSNLAERALNLD----LNCPRFVSEPCMRITQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDQTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAQLRAYTLFATHYFELTVLPENEPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSDVIVRAREHLSRL 798
>gi|296084702|emb|CBI25844.3| unnamed protein product [Vitis vinifera]
Length = 144
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 111/134 (82%), Positives = 124/134 (92%)
Query: 495 AYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVA 554
+YTIFA+HMENLSELATIYPNVKILHF V I+N+RLDFKFQLKDGPRHVPHYGLLLA VA
Sbjct: 11 SYTIFATHMENLSELATIYPNVKILHFDVDIKNSRLDFKFQLKDGPRHVPHYGLLLAGVA 70
Query: 555 GLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRH 614
GLPS+VI+TA SITSRIT+KEVKRME+NC QY IQM Y AQRLICLKYS+QDE+S+RH
Sbjct: 71 GLPSSVIKTAISITSRITEKEVKRMEVNCQQYHPIQMAYRLAQRLICLKYSSQDEDSVRH 130
Query: 615 ALQNLKESFIDGRI 628
ALQNLKES+IDGR+
Sbjct: 131 ALQNLKESYIDGRL 144
>gi|145641963|ref|ZP_01797536.1| DNA mismatch repair protein [Haemophilus influenzae R3021]
gi|145273329|gb|EDK13202.1| DNA mismatch repair protein [Haemophilus influenzae 22.4-21]
Length = 672
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 176/627 (28%), Positives = 307/627 (48%), Gaps = 62/627 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 78 IQLDAATRRNLELTQNLSG---GTEN---TLASVLDKCVTPMGSRLLKRWIHQPIRDVEK 131
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 132 LKQRQQAIAEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 180
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVID 176
L+TAL+ +P L +++ L ++ + + +E++ +++ + E
Sbjct: 181 -----------LRTALEQIPALRTIVQQKTPLFLTALFSQIADFSEQWDLLQRALIET-- 227
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
P + R A G + LD R ++ + NL + RE + LK+
Sbjct: 228 -------PPLLIRDGGVIA--EGYNTELDEWRMLSDGATQYLENLEKRERENTGIDTLKI 278
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
FN G+Y+ I K P +++ N EL + + G
Sbjct: 279 GFNAVHGYYIQISQGQAH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALE 337
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPL 354
+ + L D + + L L + L LD++VN A+T++ Y P F + +
Sbjct: 338 KQLYDELFDLLLPHLGALQLASLALSELDVLVNLAERANTLN------YVMPTFCDEVSV 391
Query: 355 AIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I+ GRHP++E + D FI N + ++ +++++TGPNM GKSTY++Q LI +LA IG
Sbjct: 392 KIENGRHPVVEQVLKDPFIANPVELNHNRHLLVITGPNMGGKSTYMRQTALITLLAYIGS 451
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +DRIFTR+G D+L S STFM EM E A ++ + +SL+++DE+GR
Sbjct: 452 FVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATAQSLVLIDEIGRG 511
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+C E L +++ T+FA+H L+ L ++ +H + NN + F
Sbjct: 512 TSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLESIANIHLDALEHNNTIAF 571
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++DG YGL +A +AG+P +VI+ A+ +++ K E +QIQ L
Sbjct: 572 MHAVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAE------QQIQAL 624
Query: 593 YHAAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A++ L
Sbjct: 625 REANHNQGELLF-EQETDALREAIEKL 650
>gi|390948203|ref|YP_006411963.1| DNA mismatch repair protein MutS [Alistipes finegoldii DSM 17242]
gi|390424772|gb|AFL79278.1| DNA mismatch repair protein MutS [Alistipes finegoldii DSM 17242]
Length = 902
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 173/581 (29%), Positives = 291/581 (50%), Gaps = 64/581 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKR---SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
+D ++RNLE+ +SN R S ++ T T G RLL+ + P+KD
Sbjct: 283 VDKFTIRNLELF---------SSNGAREKCSFADVIDRTLTPMGGRLLKRWIAMPIKDPV 333
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I RLD +++ + + L + R +++ S++ +
Sbjct: 334 KIGERLDVVEKFVRDADL------------ADVVREQVALVGDMERIASRI------AAA 375
Query: 120 QTLISSIILLKTALDALPLLAKVLK---DAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
+ ++ LK +L A+ LL L+ DAQ LA + + +R RI I
Sbjct: 376 RVTPRELVQLKNSLFAVELLKAALESTDDAQLHALAG------QIDLLEGVRDRIAREIY 429
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
D L+ ++ Q+ I G+D LD RR + + + + E +P+LK+
Sbjct: 430 PDPLNNQI------QKGGVIADGVDPELDDLRRIALHGKDYLARIQQRESEATGIPSLKI 483
Query: 237 PFNNRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
+NN G+Y+ + HK+ K+P T+I+ N T EL + A + +
Sbjct: 484 SYNNVFGYYIEVRNAHKE---KVPETWIRKQTLANAERYITEELKEYEEKILGAEEKMLV 540
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
+ ++D I +S L A V+ +D + SFA + RY RP + +
Sbjct: 541 IEQRIYADIIDHISRSLSHLLRDAAVVARIDCL-QSFARLACER---RYVRPVLDDGKLI 596
Query: 355 AIDGGRHPILES---IHNDFIPNNIFISEAANMVI-VTGPNMSGKSTYLQQVCLIVILAQ 410
I GRHP++E+ + +++PN++ + + ++ +TGPNMSGKS L+Q LI+++AQ
Sbjct: 597 DIRQGRHPVIETLLPVGEEYVPNDVMLDDKEQQIMMITGPNMSGKSALLRQTALIILMAQ 656
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G +VPA + I VVD+IFTR+G DN+ STFM EM E+A ++ N+S+RS++++DE+
Sbjct: 657 MGSFVPAKSAHIGVVDKIFTRVGASDNISQGESTFMVEMLESASILNNISDRSIVLLDEI 716
Query: 471 GRATSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
GR TS+ DG +IAW+ E+L S A T+FA+H L+E+ + P VK H V
Sbjct: 717 GRGTSTYDGISIAWAMVEYLHNHPSAHAKTLFATHYHELNEMEQMCPRVKNFHVSVKEMG 776
Query: 528 NRLDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
N++ F +L + G H +G+ +A +AG+P +V+ A I
Sbjct: 777 NQIVFLRKLERGGTEH--SFGIHVARMAGMPVSVVSRADEI 815
>gi|297588419|ref|ZP_06947062.1| DNA mismatch repair protein MutS [Finegoldia magna ATCC 53516]
gi|297573792|gb|EFH92513.1| DNA mismatch repair protein MutS [Finegoldia magna ATCC 53516]
Length = 859
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 178/585 (30%), Positives = 303/585 (51%), Gaps = 52/585 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ SV NLEI + L+ T++K SLF +L TKT G+RLL + L +PL D E
Sbjct: 257 MEIDSNSVINLEIQKNLY-----TNSKNGSLFGVLNHTKTSMGSRLLHSYLERPLMDKEE 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I TR ++E+ + +L L L + DR++ +K NAK
Sbjct: 312 ILTRQSRVEEIFEDYELLVNLEDSLDGI-YDLDRLIAKLSYKSA----------NAK--- 357
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID-EDV 179
+I LK +++ +P L +L C + I +++ ++ D D+
Sbjct: 358 ----DLIALKVSIEKIPYLKTLLN--------------CNKKNIQLIGEKLDDLGDIYDL 399
Query: 180 LHARV---PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
+ + P V T+ IK LD R + + + ++ L + NLK+
Sbjct: 400 IDKSIVDDPPVTLTEGNL-IKSNFSNELDQLRYNRVNGKNELVEYEMSEKDRLGIKNLKI 458
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
FN + G+++ + ++ K+ + + N+ T +L ++ + + E +
Sbjct: 459 VFNKKLGYFIDVTKSNLN-KVGDDYEKRQTLTNSSRFKTKQLEAIESKILDSEDEIFELE 517
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
E + I +++S + A+++ ++D + NS A ++ Y +P G + +
Sbjct: 518 YKIFEDIRKIILKNLSRIKKSADLIAIID-VSNSLAKC---AYLNNYIKPDINTYGLIDV 573
Query: 357 DGGRHPILE-SI-HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGC 413
RHPI+E S+ ++FI N+I I N + ++TGPNMSGKSTYL+QV LI IL QIG
Sbjct: 574 LESRHPIVELSVGQSEFITNDILIGSGKNDIQLITGPNMSGKSTYLRQVALICILNQIGS 633
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +VD+IFTR+G+ DNL STFM EMKE + +++ + SL+V+DE+GR
Sbjct: 634 FVPATKANISIVDKIFTRIGSSDNLFKGESTFMVEMKEMSNIIKYATSNSLLVLDEIGRG 693
Query: 474 TSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+ E++ ++KA T+FA+H L+EL N+ + + N+ + F
Sbjct: 694 TSTFDGLSLAWAIVEYISKNIKAKTLFATHYHELTELEKKLDNLINMKVDIKETNDSIIF 753
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
++ G YG+ +AE+AG+P ++I+ A+SI I K++ K
Sbjct: 754 LRKITRGSTD-KSYGIEVAELAGMPKSLIKRAKSILKEIDKEDTK 797
>gi|375084995|ref|ZP_09731788.1| DNA mismatch repair protein MutS [Megamonas funiformis YIT 11815]
gi|374567644|gb|EHR38853.1| DNA mismatch repair protein MutS [Megamonas funiformis YIT 11815]
Length = 912
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 179/572 (31%), Positives = 295/572 (51%), Gaps = 50/572 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID ++RNLEI L KK +L+ +L TKT G+RLLR L PL + IN
Sbjct: 262 IDTYTLRNLEITRNLRDG-----GKKDTLYDVLDFTKTAMGSRLLRKWLEYPLLSPKKIN 316
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + L+SN F L LR+ KE + F+ + +T + NA+ L
Sbjct: 317 DRLDAVANLVSN----FSLRNNLREQLKEI------YDFE-RLLTRMEVGTANARDMNAL 365
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
K++L LP + K L A + LLANI++ + Y + I + I ED
Sbjct: 366 -------KSSLYVLPAIKKSLSKATAKLLANIHQKIS---TYDDLVVLIDKAIVED---- 411
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + + F IK G + LD R ++ + + + + + +LK+ +N
Sbjct: 412 --PSFSIREGGF-IKDGYNQELDEYRNIAKNSKRLLQQMEEDEKNKTGIKSLKIGYNKVF 468
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL-E 301
G+Y+ + H + +P +I+ N T EL + A E ++ E L
Sbjct: 469 GYYIEVRHSSTE-MVPENYIRKQTLANAERYITPELKEFETK-ILGAQEKIVQLEYNLFT 526
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
L D ++ +S + A + +LD++V S A Y RP ++G + I GRH
Sbjct: 527 ELRDILKTQISSIQNTAHEIAILDVLV-SLAQAGDEY---NYIRPKLLDDGTIHIKDGRH 582
Query: 362 PILESIHND--FIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
P++E I N F+PN+ + A N ++I+TGPNM+GKSTY++Q L+ ++ Q+G ++PA
Sbjct: 583 PLVERILNRDLFVPNDTHLDNAQNEIMIITGPNMAGKSTYMRQSALLTLMTQVGSFIPAR 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
++I VD+IFTR+G D+L S STFM EM E + +++ + +SL+++DE+GR TS+ D
Sbjct: 643 EASISPVDKIFTRIGASDDLVSGQSTFMVEMNEVSHILKYATNKSLVILDEIGRGTSTYD 702
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF--Q 535
G +IA + EH+ + A T+FA+H L++L +V + ++ + ++ D F +
Sbjct: 703 GMSIARAVIEHIRDHIGAKTLFATHYHELTDLED---DVHVKNYCIAVKEKGSDVTFLRR 759
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ G YG+ +A++AGLP V++ A +I
Sbjct: 760 IIRGSAD-KSYGIHVAKLAGLPQEVVKRAETI 790
>gi|399024625|ref|ZP_10726658.1| DNA mismatch repair protein MutS [Chryseobacterium sp. CF314]
gi|398080075|gb|EJL70903.1| DNA mismatch repair protein MutS [Chryseobacterium sp. CF314]
Length = 861
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 171/584 (29%), Positives = 300/584 (51%), Gaps = 75/584 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++RNLEI+ P ++ + +SL ++ T T G RLLR ++ PLK ++ I
Sbjct: 264 MDNFTLRNLEIVYP-------SNPQGKSLLDIIDRTSTPMGGRLLRRRIILPLKSVDEIG 316
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFC---FKPKKVTSKVLDVDNAKKS 119
RL +D L N+ L + +SQ L+ + DR++ PK++ + N K
Sbjct: 317 RRLSLIDFLNENDNLKYEISQLLKSI-SDLDRLMGKLAAEKISPKELGYLRQSLINIYKI 375
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ + ++ L L +++K Q++L + ++ + G VI E +
Sbjct: 376 NALLHPFADVLAWIEPLYDLEELIKCLQNYLNEELPVNIAK-----------GNVIKEGI 424
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+++ ++G L R F D + + E + +LK+ FN
Sbjct: 425 ----------SEELDRLRG-----LQSKGRGFLD------EMCQREIERTGISSLKIDFN 463
Query: 240 NRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGEC 292
N G+++ + HKD K+P +++ N T EL L K E
Sbjct: 464 NVFGYFIEVRNTHKD---KVPGDWLRKQTLVNAERYITEELKEYENQILGAEEKIGVLEN 520
Query: 293 YIRTEICLEALV--DAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
+ +C E +V D I+E+ +++ L + L ++ V+ + YT+P +
Sbjct: 521 ELYRNVCSETMVYIDQIQENSNIIAQLDVAVGLSELAVS-----------ESYTKPVLND 569
Query: 351 NGPLAIDGGRHPILES---IHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIV 406
+ + + RHPI+E+ + +IPN+IF+ ++ +++VTGPNM+GKS L+Q ++
Sbjct: 570 SFSIDLQEARHPIIENALPLGEKYIPNDIFLDKDSQQIIMVTGPNMAGKSAILRQTAIVC 629
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
+LAQIG +VPA + I ++D+IFTR+G DN+ + STFM EM E A ++ N+SERSLI+
Sbjct: 630 LLAQIGSFVPAKHAEIGILDKIFTRVGATDNISAGESTFMVEMNEAANILNNISERSLIL 689
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLS--LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
+DE+GR TS+ DG +IAW+ E+L +A T+FA+H L+E+ + +K +F+V
Sbjct: 690 LDEIGRGTSTYDGVSIAWAIAEYLHQHPTQAKTLFATHYHELNEMTVNFERIK--NFHVS 747
Query: 525 IRNNRLDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSI 567
I+ N+ + F K P H +G+ +A++AG+P+ V+ A I
Sbjct: 748 IQENKGNIIFLRKLIPGGSEHSFGIHVAKLAGMPAKVVNRANEI 791
>gi|383317595|ref|YP_005378437.1| DNA mismatch repair protein MutS [Frateuria aurantia DSM 6220]
gi|379044699|gb|AFC86755.1| DNA mismatch repair protein MutS [Frateuria aurantia DSM 6220]
Length = 910
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 172/578 (29%), Positives = 273/578 (47%), Gaps = 45/578 (7%)
Query: 3 IDATSVRNLEI-IEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+DA + RNLE+ P T + +L +L T T G RLLR L +PL+ +
Sbjct: 317 LDAATRRNLELDTHP-------TGRTEYTLLGVLDETVTPMGARLLRRWLNRPLRSRAVL 369
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQT 121
R + L++ + + GL + LR + +R+L + +
Sbjct: 370 KARQQAIAALLNGRE-YEGLREQLRAI-GDLERILARVALRSARP--------------- 412
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
+ L+ L A P L + L+ + LL + + ++ + A+ R +
Sbjct: 413 --RDLATLRDGLAAAPALRQQLQALDAPLLHQLVERIGDHAETAAELAR--------AIL 462
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
+ P + R A G D LD RR + + L + + L LK+ +N
Sbjct: 463 PQPPQLLRDGGVIA--EGYDSELDELRRLSTHADQYLVELEEREKAASGLSTLKVGYNRV 520
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ I K K P+ + + N T EL + SA +R E
Sbjct: 521 HGYYIEI-SKSQSEKAPTHYTRRQTTKNAERYITEELKGFEDKVLSAKERSLMRERALYE 579
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
AL++ + + L A + LD++ + + P E + I+ GRH
Sbjct: 580 ALLETLVAGLEPLKSAASAIAELDVLADLAERADQLN----WAAPELVEEAGIRIERGRH 635
Query: 362 PILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
P++E + ++ F PN++ + M+++TGPNM GKSTY++Q LI +LA IG YVPA +
Sbjct: 636 PVVEKVRDEPFEPNDLMLDRETRMLVITGPNMGGKSTYMRQNALITLLAHIGSYVPADKA 695
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
I VDRIFTR+G D+L STFM EM ETA ++ N + SL++MDE+GR TS+ DG
Sbjct: 696 VIGPVDRIFTRIGAGDDLSRGQSTFMVEMSETANILHNATAHSLVLMDEVGRGTSTYDGL 755
Query: 481 AIAWSCCEHLLSLK-AYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
A+A + HL AYT+FA+H L+ELA YP ++ +H V ++L F +K G
Sbjct: 756 ALAKAAAVHLGRHSCAYTLFATHYFELTELAAHYPAIENVHLDAVEYGDQLIFMHAVKPG 815
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
P + +GL +A +AGLP +VI AR + + + K
Sbjct: 816 PANR-SFGLQVAALAGLPRSVIADARRTLTELERGHSK 852
>gi|307250881|ref|ZP_07532809.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306857131|gb|EFM89259.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 864
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 172/568 (30%), Positives = 278/568 (48%), Gaps = 50/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E +
Sbjct: 267 LDAATRRNLELTQNLAG---GTEN---TLAAVLDKCVTPMGSRLLKRWIHQPIRDLEKLK 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R D +D L EQ L L+ + +R+L + P+ +T
Sbjct: 321 KRQDIIDTL-QKEQRIEPLQPLLQNV-GDMERILARVALRSARPRDLTR----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+TAL LP +AK K+ + L A + + +E +A +++ I E + +
Sbjct: 368 ---------LRTALAQLPDIAKNAKNLTASLDALVAQIGDFSELHALLKRAIIETPPQLI 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V I G + LD R ++ + NL + RE + LK+ FN
Sbjct: 419 RDGGV-----------IAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKIGFN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I K P +++ N EL + + A G +
Sbjct: 468 AVHGYYIQISQGQAH-KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGASLALEKQL 526
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L D + + + L A L LD++ N S Y RP F+ + I GG
Sbjct: 527 YDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLN----YVRPTFSLQRGVNIKGG 582
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + D FI N +F++ ++++VTGPNM GKSTY++Q+ LI ++A IG +VPA
Sbjct: 583 RHPVVEQVLKDPFIANPVFLNAQRHLLVVTGPNMGGKSTYMRQIALISLMAYIGSFVPAD 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM E A ++ +E+SL+++DE+GR TS+ D
Sbjct: 643 SAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEKSLVLIDEIGRGTSTYD 702
Query: 479 GFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L ++ T+FA+H L+ L + V +H + + F ++
Sbjct: 703 GLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAREHQDSIVFMHSVQ 762
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+G YGL +A +AG+P VI+ A+
Sbjct: 763 EGAAS-KSYGLAVAALAGVPKQVIQLAK 789
>gi|374619664|ref|ZP_09692198.1| DNA mismatch repair protein MutS [gamma proteobacterium HIMB55]
gi|374302891|gb|EHQ57075.1| DNA mismatch repair protein MutS [gamma proteobacterium HIMB55]
Length = 842
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 180/586 (30%), Positives = 292/586 (49%), Gaps = 60/586 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + +H N+ +LF + +T T GTR L+ +P++ + +
Sbjct: 256 LDAATRRNLEIDKNVHG------NEDNTLFSVYNSTVTAMGTRHLKRWFHRPVRIRDELE 309
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
RL+ ++ L SN + G Q L+ + +R+L + P+ +T
Sbjct: 310 ARLEAVEALKSNYN-YEGTRQHLKPI-SDMERILARVALRSARPRDLTR----------- 356
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQS---FLLANI--YRSVCENEKYASIRKRIGEV 174
L+ +L ALP L + A L+A+I Y ++CE A I
Sbjct: 357 ---------LRDSLWALPALVSAVPRASEKLEALVADIGEYPALCELLSKALIES----- 402
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
P V R A G D LD R + E + ++ + RE L L
Sbjct: 403 ---------PPVVIRDGGVLA--AGYDDELDELRGISENAGEYLVDIERREREATGLSTL 451
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
K+ +N G+Y+ I + + P T+ + N T EL + S+
Sbjct: 452 KVGYNRVHGYYIEISRQQ-SDQAPETYQRRQTLKNVERFITPELKQFEDKALSSRSRALA 510
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
R + +ALV+ + ED+ L + LC LD++ FA + TRP+F+ L
Sbjct: 511 REKHLYDALVERVAEDLIALQRTSNALCDLDVLA-CFAERADALTL---TRPNFSNEVQL 566
Query: 355 AIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GGRHP++E + + FI NN +++ M+++TGPNM GKSTY++Q LI +LA G
Sbjct: 567 DITGGRHPVVEQVSDRPFIANNTLLNDTRRMLLITGPNMGGKSTYMRQNALITLLAHCGA 626
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA +T+ +VDRIFTR+G+ D+L S STFM EM ETA ++ N ++RSL++MDE+GR
Sbjct: 627 FVPAQSATLSLVDRIFTRIGSSDDLASGLSTFMVEMTETANILHNATDRSLVLMDEVGRG 686
Query: 474 TSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG +IAW+ L ++A T FA+H L+ L + + +H + + F
Sbjct: 687 TSTFDGLSIAWAAAVALAERVRALTFFATHYFELTALPEDHSAMANVHLDATEHEDHVVF 746
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
+++GP + +GL +A++AG+PS V+ AR + + ++V +
Sbjct: 747 MHHIQEGPANR-SFGLEVAKLAGVPSGVLLHARQKLAELESQQVSQ 791
>gi|317478037|ref|ZP_07937219.1| DNA mismatch repair protein MutS [Bacteroides sp. 4_1_36]
gi|316905826|gb|EFV27598.1| DNA mismatch repair protein MutS [Bacteroides sp. 4_1_36]
Length = 871
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 179/581 (30%), Positives = 297/581 (51%), Gaps = 58/581 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +VR+LE++ ++ G S SL +++ T + G RLL+ L+ PLKD++ IN
Sbjct: 267 LDKFTVRSLELMGSMND---GGS----SLLNVIDKTISPMGARLLKRWLVFPLKDVQPIN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL+ + + FF F KE H +++ SKV +
Sbjct: 320 ERLNVV-------EYFFRQPDF-----KELIEEQLHLIGDLERIISKV------AVGRVS 361
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDEDVL 180
++ LK AL A+ + DA + L +I ++C+ SIR RI ID D
Sbjct: 362 PREVVALKVALQAIEPIKAACMDADNASLNHIGEQLNICQ-----SIRDRIDREIDNDP- 415
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK G+ LD R+ + + + + E ++P+LK+ +NN
Sbjct: 416 ----PLL--INKGGVIKSGVSAELDELRQIAYSGKDYLLQIQQRESELTEIPSLKIGYNN 469
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+Y+ + HKD K+P+ +I+ N T EL + A + +
Sbjct: 470 VFGYYIEVRNTHKD---KVPAEWIRKQTLANAERYITQELKEYEEKILGAEDKILVLETQ 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
LV ++ E + + + A + LD ++ SFA + + Y RP ++ L I
Sbjct: 527 LYAELVQSLSEFIPAIQINANQIARLDCLL-SFA---TAARENNYIRPVIADDDVLEICQ 582
Query: 359 GRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E I +I N++ + S+ ++I+TGPNM+GKS L+Q LI +LAQIG +
Sbjct: 583 GRHPVIEKQLPIGEKYIANDVMLDSQTQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 642
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +VD+IFTR+G DN+ STFM EM E A ++ N+S RSL++ DELGR T
Sbjct: 643 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGRGT 702
Query: 475 SSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAW+ EH+ KA T+FA+H L+E+ + +K + V +N++
Sbjct: 703 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEIDNKVI 762
Query: 532 FKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
F +L + G H +G+ +A++AG+P ++++ A I ++
Sbjct: 763 FLRKLERGGSEH--SFGIHVAKMAGMPKSIVKRANDILKQL 801
>gi|333029553|ref|ZP_08457614.1| DNA mismatch repair protein mutS [Bacteroides coprosuis DSM 18011]
gi|332740150|gb|EGJ70632.1| DNA mismatch repair protein mutS [Bacteroides coprosuis DSM 18011]
Length = 876
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 178/581 (30%), Positives = 298/581 (51%), Gaps = 58/581 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++R+LE++ ++ G S SL ++ T T G RLL+ ++ PLK++ IN
Sbjct: 268 LDKFTIRSLELLNSMND---GGS----SLLQVIDKTITPMGGRLLKRWVVFPLKEVNAIN 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +D FF F KE H +++ SKV +
Sbjct: 321 NRLDVVD-------YFFKQPSF-----KEIITDQLHLIGDLERIISKV------AVGRVS 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDEDVL 180
++ LK AL A+ + K +A L I ++CE IR RI + I+ D
Sbjct: 363 PREVVQLKVALQAIEPIKKACLNANDASLNRIGDQLNLCE-----KIRDRIDKEIENDP- 416
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + I G++ LD R+ + + + + EE +P+LK+ +NN
Sbjct: 417 ----PML--VNKGHVICSGVNEELDDLRKIAYSGKDYLLQIQQREIEETGIPSLKIAYNN 470
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+Y+ + HKD K+P +I+ + T EL + A + I
Sbjct: 471 VFGYYIEVRNTHKD---KVPKEWIRKQTLVSAERYITQELKVYEEKILGAEEKILILEAK 527
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E LV + E +S + L A + LD ++ SF+ S +++Y RP ++ L+I
Sbjct: 528 LFEELVTDLAEYISAIQLNANQIAALDCLL-SFS---SIAQLNKYIRPVIQDDDVLSIQQ 583
Query: 359 GRHPILES---IHNDFIPNNIFISEAANMVI-VTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E + +I N++++ +I +TGPNMSGKS L+Q LI ++AQIGC+
Sbjct: 584 GRHPVIEKELPLGEQYIANDVYLDNTTQQIIMITGPNMSGKSALLRQTALITLMAQIGCF 643
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +VD+IFTR+G DN+ STFM EM E A ++ N+S RSL++ DELGR T
Sbjct: 644 VPAESAQIGLVDKIFTRVGASDNISMGESTFMVEMNEAANILNNLSSRSLVLFDELGRGT 703
Query: 475 SSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAW+ E++ + +A T+FA+H L+E+ + +K + V +N++
Sbjct: 704 STYDGISIAWAIVEYIHNNPNNRAKTLFATHYHELNEMEKSFDRIKNYNVSVKEIDNKVI 763
Query: 532 FKFQLK-DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
F +LK G H +G+ +A++AG+P ++++ + I +++
Sbjct: 764 FLRKLKRGGSEH--SFGIHVAKMAGMPPSIVKRSNEILAQL 802
>gi|187779607|ref|ZP_02996080.1| hypothetical protein CLOSPO_03203 [Clostridium sporogenes ATCC
15579]
gi|187773232|gb|EDU37034.1| DNA mismatch repair protein MutS [Clostridium sporogenes ATCC
15579]
Length = 931
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 303/578 (52%), Gaps = 46/578 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID S RNLEI E L KK SL +L T T G R LR + QPL +
Sbjct: 261 LTIDVNSRRNLEITENLRE-----KTKKGSLLWVLDKTNTAMGGRQLRRWIEQPLINKNP 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ ++EL++N L L + LR + +R++ KV SK + NAK+
Sbjct: 316 IEDRLNAVEELLNNISLQEDLKEDLRSI-YDIERIVG-------KVASKSV---NAKE-- 362
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I LK ++ +P + + L + +S L N+ +++ + I E++D+ +L
Sbjct: 363 -----LISLKCSIGKIPYIKEYLANFKSDLFLNMEQNI-------DTLEDIHELLDKSLL 410
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ P ++ ++ IK G + +D R + + + + +L K +EE + +LK+ +N
Sbjct: 411 DS--PSLS-VKEGNIIKEGFNEEVDSLREAKSNGKKWIASLEQKEKEETGIKSLKVSYNK 467
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+++ I ++ +I+ N T EL + + A E I E L
Sbjct: 468 VFGYFIEITKANLSSVPEGRYIRKQTLANAERYITPELKEMEEK-ILGAEEKLIDIEYKL 526
Query: 301 -EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ D I E++ + A ++ +D + S A T++ + + Y +P+ + I+ G
Sbjct: 527 FTKIRDFIEENIDRMQKTARIISDIDCLC-SLA-TVALE--NNYIKPNINAKDEILIEEG 582
Query: 360 RHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
RHP++E + +FI N+ I N ++++TGPNM+GKSTY++QV LI I+AQIG +VP
Sbjct: 583 RHPVVEKVIPKGEFISNDSLIDTKENQLILITGPNMAGKSTYMRQVALITIMAQIGSFVP 642
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I + D+IFTR+G D+L + STFM EM E + +++N + +SL+++DE+GR TS+
Sbjct: 643 AKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVLLDEVGRGTST 702
Query: 477 SDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
DG +IAWS E++ +L+ T+FA+H L++L VK V N + F
Sbjct: 703 YDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTKLEDNIEGVKNYSVSVSELENEIVFL 762
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
++ G YG+ +A++AGLPS VI A+ I I
Sbjct: 763 RKIIRGGAD-QSYGIEVAKLAGLPSPVINRAKEILQHI 799
>gi|167765541|ref|ZP_02437605.1| hypothetical protein CLOSS21_00035 [Clostridium sp. SS2/1]
gi|167712726|gb|EDS23305.1| DNA mismatch repair protein MutS [Clostridium sp. SS2/1]
Length = 875
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 184/604 (30%), Positives = 303/604 (50%), Gaps = 57/604 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID++S RNLE+ E L KK SL +L TKT G R+LR + QPL D +
Sbjct: 270 MIIDSSSRRNLELCETLRD-----KQKKGSLLWVLDKTKTAMGARMLRNMVEQPLVDKKK 324
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D + L + L ++L + +R++ +K T+ D
Sbjct: 325 IEERYDAVTTLTDQTIVREELREYLNPI-YDLERLMTKVSYK----TANPRD-------- 371
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I KT+L+ LP + VL++ + LL+ + + E ++ ED +
Sbjct: 372 -----MIAFKTSLELLPAIKTVLEECKDPLLSGLREDLDPLEDIHNLL--------EDSI 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK G +D +R+ + + + L + RE+ + NLK+ FN
Sbjct: 419 IEEPPLAIK--EGGIIKEGFKEDIDKLKRAKTEGKQWLMELEEREREKTGIKNLKIKFNK 476
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + +KD+ +P +I+ N+ +T EL L + Y
Sbjct: 477 VFGYYLDVTNSYKDL---VPDHYIRKQTLANSERYTTEELNQLADTILGSEDRLYALEYE 533
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ + + ++ ++ A V+ +D + S A+ + + RP G + I
Sbjct: 534 TYVMIRETLAGEMERISRTANVIAQIDALA-SLAYVAER---NHFVRPKLNVRGTIDIKD 589
Query: 359 GRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E I ND FI N+ ++ N V I+TGPNM+GKSTY++QV LIV++AQIG +V
Sbjct: 590 GRHPVVEQVIPNDMFISNDTYLDNKKNRVAIITGPNMAGKSTYMRQVALIVLMAQIGSFV 649
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +VDRIFTR+G D+L S STFM EM E A +++N ++ SL+++DE+GR TS
Sbjct: 650 PAAKANIGIVDRIFTRVGASDDLASGQSTFMVEMSEVANILRNATKNSLLILDEIGRGTS 709
Query: 476 SSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFY-VVIRNNRLD 531
+ DG +IAW+ E++ + L A T+FA+H L+EL + +H Y + ++ D
Sbjct: 710 TFDGLSIAWAVVEYISNSKLLGAKTLFATHYHELTELEG---KIDSVHNYCIAVKEQGDD 766
Query: 532 FKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
F +K G YG+ +A++AG+P VI A+ I + + ++ + + Y +
Sbjct: 767 IVFLRKIVKGGADK--SYGVQVAKLAGVPDAVINRAKEIARELEEHDLTSGAKDIMPYGE 824
Query: 589 IQML 592
Q L
Sbjct: 825 AQQL 828
>gi|431931444|ref|YP_007244490.1| DNA mismatch repair protein MutS [Thioflavicoccus mobilis 8321]
gi|431829747|gb|AGA90860.1| DNA mismatch repair protein MutS [Thioflavicoccus mobilis 8321]
Length = 854
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 166/571 (29%), Positives = 276/571 (48%), Gaps = 55/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI L + + +L ++ T T G RLLR L +PL++ +
Sbjct: 267 LDAATQRNLEITASL------SGRPEHTLAGVMDRTCTAMGARLLRRWLGRPLRERAAVA 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L L++ GL LR+ V + + D++ L
Sbjct: 321 ARHEALATLLAG-----GLEADLRE------------------VLAGIGDLERILARVAL 357
Query: 123 ISS----IILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
S+ + +L+ +L +LP L L LLA + + ++ + +R
Sbjct: 358 GSARPRDLAVLRDSLASLPALRAPLAPVDDALLAGLNNDLGDHGATVELLER-------- 409
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+ A P + R A G D LD R + + +L + RE + LK+ +
Sbjct: 410 AIVASPPLLIRDGGVIAT--GYDRDLDTLRDLSATADQFLLDLEARERERTGIAGLKVGY 467
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + ++P+ +++ T EL S+ R +
Sbjct: 468 NRVHGYYIELGRSQAE-RVPTEYVRRQTLKGAERYITPELKRFEDEVLSSRERALAREKA 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAI 356
EAL+ +RE + L A + LD++ + A + + RP E +AI
Sbjct: 527 LYEALLGRLREGIGPLQQAATAIATLDVLADLADCARRLG------WERPELVEEPVIAI 580
Query: 357 DGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
+GGRHP++E + F+ N+ + + + +VTGPNM GKST+++Q LIV+LA G +V
Sbjct: 581 EGGRHPVVEQVLQTPFVANDCRLDDRRRLTVVTGPNMGGKSTFMRQTALIVLLACAGSFV 640
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + + +DRIF+R+G D+L STFM EM+ETA ++ N ++ SL++MDE+GR TS
Sbjct: 641 PARRARLGPIDRIFSRIGAADDLAGGRSTFMVEMEETANILHNATDLSLVLMDEVGRGTS 700
Query: 476 SSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG ++AW+C L + + A+T+FA+H L+ L YP + LH V + F
Sbjct: 701 TFDGLSLAWACAVELATRIGAFTLFATHYFELTTLPDEYPGIVNLHLDAVEHGETIVFLH 760
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++DGP + YGL +A +AG+P VI AR
Sbjct: 761 EVRDGPANQ-SYGLQVAALAGVPRDVIGRAR 790
>gi|386815603|ref|ZP_10102821.1| DNA mismatch repair protein MutS [Thiothrix nivea DSM 5205]
gi|386420179|gb|EIJ34014.1| DNA mismatch repair protein MutS [Thiothrix nivea DSM 5205]
Length = 857
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 176/570 (30%), Positives = 284/570 (49%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE L S+L G K +L ++ T T G+RLLR L +PL+D T+
Sbjct: 266 LDAASRRNLE----LESSLSG--EHKNTLISVIDKTATSMGSRLLRRWLNKPLRDRNTLR 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + + L LR + +R+ +++ D+ + S +
Sbjct: 320 NRHQAVGTLLEQYR-YEDLHNTLRGI-GDIERIASRIALG----SARPRDLSTLRDSLHV 373
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ I LD P L +L+D +A +R + I ++
Sbjct: 374 LPHIHAQIQPLDN-PRLQALLQDINP---------------HAELRHLLDSAIIDNP--- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G D LD R + + + +L + + + LK+ +N
Sbjct: 415 --PVVIRDGGVIA--SGFDAELDELRNLSENADQYLLDLETREKARTGIDKLKVAYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNI---HCSTLELASLNVRNKSAAGECYIRTE 297
G+Y+ +P + ++P+ +I Q +K E L+ R +S A R +
Sbjct: 471 GYYVEVPQSQLS-RIPADYIRRQTLKGVERFILPELKKFEDKVLSARERSLA-----REK 524
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L+ + E + L A+ + LD++ N FA ST Y P E + I+
Sbjct: 525 AIYEDLLRTLAEHLLPLRQSAQAIAELDVLGN-FAERASTL---NYNCPALVEGSGIQIE 580
Query: 358 GGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E ++ F+PN++++ M+++TGPNM GKSTY++QV LIV+LA IG YVP
Sbjct: 581 GGRHPVVERTLDAPFVPNDLYMDSRRRMLMITGPNMGGKSTYMRQVALIVLLAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L + STFM EM E A ++ N + SL++MDE+GR TS+
Sbjct: 641 AQTARIGNIDRIFTRIGAHDDLSTGRSTFMVEMTEAANILNNATAHSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E+L KA+T+FA+H L+ L + +H + +++ F
Sbjct: 701 FDGLSLAWAFAEYLARERKAFTLFATHYFELTVLPEQISTIVNVHIDAIEHGDKIVFLHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+K+GP + YGL +A++AG+P VI AR
Sbjct: 761 VKEGPAN-QSYGLQVAQLAGVPKPVIAQAR 789
>gi|104783162|ref|YP_609660.1| DNA mismatch repair protein MutS [Pseudomonas entomophila L48]
gi|122402199|sp|Q1I659.1|MUTS_PSEE4 RecName: Full=DNA mismatch repair protein MutS
gi|95112149|emb|CAK16876.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Pseudomonas entomophila L48]
Length = 857
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 171/570 (30%), Positives = 282/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + +L ++ +T +RLL L +PL+D++ +
Sbjct: 266 LDAASRRNLELDINL------AGGRDNTLQSVIDRCQTAMASRLLTRWLNRPLRDLKVLK 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQDSIRCLLDGYR-FEKLQPQLKEI-GDIERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ LA + + A + +R +ID
Sbjct: 363 --DLARLRDALGALPELQNAMAELEAPHLARLAAITGTYPELAGLLERA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + L NLK+ +N
Sbjct: 415 --PAVIRDGGV--LKTGYDSELDELLAMSENAGQFLIDLEAREKARTGLANLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ +P K + + P +I+ T EL + + SA R ++ +A
Sbjct: 471 GYYIELPTKQAE-QAPGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDA 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ P F + L I+ GRHP
Sbjct: 530 LLETLIGHLAPLQDSAAALAELDVLSNLAERALNLD----LNCPSFVDEPCLRIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV++A IG +VPA
Sbjct: 586 VVEQVLTTPFVANDLGLDNSTRMLIITGPNMGGKSTYMRQTALIVLMAHIGSFVPAARCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N ++ SL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDCSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L L+AYT+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P+ VI+ AR R+
Sbjct: 766 SQ-SYGLAVAQLAGVPAVVIQRAREHLGRL 794
>gi|167630634|ref|YP_001681133.1| DNA mismatch repair protein muts [Heliobacterium modesticaldum
Ice1]
gi|167593374|gb|ABZ85122.1| DNA mismatch repair protein muts [Heliobacterium modesticaldum
Ice1]
Length = 910
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 180/601 (29%), Positives = 293/601 (48%), Gaps = 72/601 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLE+ + ++K SL ++ T T G RL++ + QPL D+E
Sbjct: 269 MRLDPATRRNLELTRTMREG-----SRKGSLLGVIDKTVTAMGGRLIKRWIEQPLTDVEA 323
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + L+ + L ++ R + +++ KV + +
Sbjct: 324 ICKRQAVVAALVDDGLL------------RQDVRAGLRAVYDLERLAGKV--AYGSANGR 369
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYAS-------IRKRIGE 173
LI+ L ++L+ALP + L+ S L EK AS + +RI E
Sbjct: 370 DLIA----LASSLEALPTVLDKLRQGPSVL-----------EKLASRIDALTPVARRITE 414
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
+ +D P V+ + I+ G +D R+ E + ++ + RE + +
Sbjct: 415 TLVDD------PPVS-VRDGGLIRSGFHPEVDELRKIAGSGKEWLAHIEQRERERTGIRS 467
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSA 288
LK+ FN G+++ + ++ +P+ +I+ N T EL + L K
Sbjct: 468 LKVGFNKVFGYFIEVSKANMT-SVPADYIRRQTLANGERYITPELKTYEEKILGAEEKLT 526
Query: 289 AGECYIRTEI--CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP 346
E + TE+ +EAL+ +++ AE + LD+ FA Y P
Sbjct: 527 QLEYRLFTELRSSIEALLPQLQK-------TAEQVAHLDV----FAALAQVAVEQGYVCP 575
Query: 347 HFTENGPLAIDGGRHPILESIHND--FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCL 404
+ + I GGRHP++E+ F+PN+ + ++++TGPNM+GKSTY++QV L
Sbjct: 576 DIHDGTEIHIQGGRHPVVEAHLGPGVFVPNDTRFCDGETLLLITGPNMAGKSTYMRQVAL 635
Query: 405 IVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSL 464
IV+LAQ+G +VPA + I VVDRIFTR+G D+L + STFM EM E A ++ + + RSL
Sbjct: 636 IVLLAQVGSFVPATAAAIGVVDRIFTRVGASDDLATGQSTFMVEMTEVAHILHHATSRSL 695
Query: 465 IVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV 524
+V+DE+GR TS+ DG AIAW+ E + L A ++FA+H L L P V+ + +
Sbjct: 696 VVLDEVGRGTSTFDGMAIAWAVAEAIQRLGAKSLFATHYHELVRLEETLPGVRC--YTIA 753
Query: 525 IRNNRLDFKFQLKDGPRHV-PHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINC 583
+R + D F + P V YG+ +A +AGLPS+VI AR I + + + KR E
Sbjct: 754 VRESGDDIVFLHQIRPGGVNKSYGIQVARLAGLPSSVILRAREILANLESESKKRPEQKA 813
Query: 584 L 584
L
Sbjct: 814 L 814
>gi|410671188|ref|YP_006923559.1| DNA mismatch repair protein [Methanolobus psychrophilus R15]
gi|409170316|gb|AFV24191.1| DNA mismatch repair protein [Methanolobus psychrophilus R15]
Length = 887
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 174/582 (29%), Positives = 299/582 (51%), Gaps = 52/582 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DA ++RNLEI++ + +L ++L T+T G RLL+ LL+PL ++
Sbjct: 270 MVLDAITLRNLEIVKNVRG-----EGSDSTLLNVLDETRTPMGGRLLQKWLLKPLVSVDD 324
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD + +L+ N + F L L + K+ +R++ + NA+
Sbjct: 325 INYRLDAVSQLLGNTLVRFDLRSHL-SYVKDMERLVGRVLYGNS----------NAR--- 370
Query: 121 TLISSIILLKTALDALPLLAKVLKD-AQSFLLANIYRSVCENEKYASIRKRIGE-VIDED 178
++ L+ +++A+P + ++ +S LL +I + + + + IG ++DE
Sbjct: 371 ----DLVALRRSMEAVPQIVDSMRGCGKSELLDDIVSQLSSFTELEELTELIGRAIVDEP 426
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
+ R IK G + LD R + K R+ + +LK+ +
Sbjct: 427 PVSVR--------DGGMIKSGYNERLDELRGLSKSGKHWIAEFQQKERDRTGIKSLKVGY 478
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
N G+YL I +I ++P +I Q + + + L+ ++ +A E +
Sbjct: 479 NKVFGYYLEITKANIS-QVPDDYIRKQTMTNAERFYTPQLKERESDIL---SADEKMVAL 534
Query: 297 EICLEALVDAIREDVS-VLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L V+A+ S L A + +LD++ N FA + + Y RP T + L
Sbjct: 535 EYELLCEVNAVVASHSKQLQDTAATIGMLDVLAN-FAEVAAN---NNYIRPGITNDCKLL 590
Query: 356 IDGGRHPILES-IHNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GRHP++ES + F+PN+ + N +++TGPNM+GKSTY++Q+ +IVI+AQ G
Sbjct: 591 IRDGRHPVVESAVRGGFVPNDTDMDCQNNQFMLITGPNMAGKSTYMRQIAMIVIMAQAGS 650
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VP ++I +VDR+FTR+G D+L S STFM EM E A ++ N + RSL+++DE+GR
Sbjct: 651 FVPVSHASIGIVDRVFTRVGAFDDLASGQSTFMVEMVELANILNNATPRSLVLLDEIGRG 710
Query: 474 TSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
TS+ DG++IA + E++ S + ++FA+H L+E+A VK +F++ ++
Sbjct: 711 TSTYDGYSIAKAVVEYIHSKGRVGVRSLFATHYHQLTEIAGNLKRVK--NFHIAVKEEGD 768
Query: 531 DFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRI 571
D F K P YG+ +A +AG+P +V + AR I I
Sbjct: 769 DLVFLRKIVPGATDKSYGIHVARIAGVPLSVTKRAREILEDI 810
>gi|416863216|ref|ZP_11915236.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 138244]
gi|334835536|gb|EGM14405.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 138244]
Length = 859
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 270 LDGASRRNLELDINL------SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 323
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 324 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 367 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 418
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 419 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 474
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 475 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 533
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 534 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 589
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 590 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 649
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 650 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 709
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 710 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 769
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+P+ VI+ AR + +KR+E L ++
Sbjct: 770 SQ-SYGLAVAQLAGVPAPVIQRAR--------EHLKRLETTSLPHE 806
>gi|323309244|gb|EGA62465.1| Msh4p [Saccharomyces cerevisiae FostersO]
Length = 751
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 166/503 (33%), Positives = 262/503 (52%), Gaps = 42/503 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VR LE++E SL+ L TT T G R LR ++LQPL D +
Sbjct: 265 MLIDSKTVRGLELVEN------KLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGS 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP---KETDRVLC--HFCFKPKKVTSKVLDVDN 115
I RL+ L+EL +N+ L L ++ P K R+LC H KP +
Sbjct: 319 IEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQ---------- 368
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEKYASIRKRIGE 173
I+ ++LLK L ++ L L D QS L++ + + N+ I K I
Sbjct: 369 ------RINYVLLLKETLQSVKSLKDALNDQFFQSRLISET-KKIFNNDAIMEIEKLINS 421
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I+ED + A Q+ +A+K +GLLD++R+ + + E + K+ N
Sbjct: 422 CINEDCVWASSAIQLLNQRSYAVKSDSNGLLDVSRQIYKEVKEEFFREVEDLTAKNKI-N 480
Query: 234 LKLPFNNRQGFYLSIPHK---DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
L +++ +GFYL I + D LP FI N I C+TL + N R K
Sbjct: 481 LDHNYDSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVME 540
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E + +E ++ L+D I +S L ++AE + +LD++ SF + + + YT P FT
Sbjct: 541 EILLLSEETVDELLDKIATHISELFMIAEAVAILDLVC-SFTYNLKE---NNYTIPIFTN 596
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILA 409
N L I RHP+LE + +F+PN I ++ ++++ I+TG NMSGKS YL+QV LI I+A
Sbjct: 597 N--LLIRDSRHPLLEKVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMA 654
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +PA + + V R+ R+ D++E SS F EMKE A+ + +++ +L+++DE
Sbjct: 655 QMGSGIPALYGSFPVFKRLHARVCN-DSMELTSSNFGFEMKEMAYFLDDINTETLLILDE 713
Query: 470 LGRATSSSDGFAIAWSCCEHLLS 492
LGR +S +DGF ++ + EH S
Sbjct: 714 LGRGSSIADGFCVSLAVTEHFTS 736
>gi|401764977|ref|YP_006579984.1| DNA mismatch repair protein MutS [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400176511|gb|AFP71360.1| DNA mismatch repair protein MutS [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 853
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 178/568 (31%), Positives = 282/568 (49%), Gaps = 51/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L + + +L +L +T T G+R+L+ L P++D T+
Sbjct: 269 MDAATRRNLEITQNLAGGI------ENTLASVLDSTVTPMGSRMLKRWLHMPIRDTNTLV 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L + L LR+ + +R+L + T++ D+
Sbjct: 323 CRQQTIAALQDR---YTELQPVLRQV-GDLERILARLALR----TARPRDLAR------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L L D S + + ++ E + +R E+++ ++ A
Sbjct: 368 ------MRHAFQQLPELRAQLSDVDSAPVQKLRETMGE---FTELR----ELLERAIIDA 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE L L LK+ +N
Sbjct: 415 -PPVLVRDGGVIA--PGYNEELDEWRALADGATDYLDKLEIRERERLGLDTLKVGYNAVH 471
Query: 243 GFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ I Q L P +++ N EL + ++ G+ + E
Sbjct: 472 GYYIQISRG--QSHLAPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYE 529
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L D + ++ L L A L LD++VN A T++ YT P FT+ + I G
Sbjct: 530 ELFDMLMPHLADLQLSASALAELDVLVNLAERAETLN------YTCPTFTDKPGIRITEG 583
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + N+ FI N + +S M+I+TGPNM GKSTY++Q LI +LA IG YVPA
Sbjct: 584 RHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQ 643
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ D
Sbjct: 644 HVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTYD 703
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L + +KA T+FA+H L++L V +H + + + F ++
Sbjct: 704 GLSLAWACAESLANKIKAMTLFATHYFELTQLPEKMEGVANVHLDALEHGDIIAFMHTVQ 763
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
DG YGL +A +AG+P VI+ AR
Sbjct: 764 DGAAS-KSYGLAVAALAGVPKEVIKRAR 790
>gi|53729249|ref|ZP_00133779.2| COG0249: Mismatch repair ATPase (MutS family) [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126209066|ref|YP_001054291.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|189030435|sp|A3N2Q0.1|MUTS_ACTP2 RecName: Full=DNA mismatch repair protein MutS
gi|126097858|gb|ABN74686.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 864
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 172/568 (30%), Positives = 278/568 (48%), Gaps = 50/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E +
Sbjct: 267 LDAATRRNLELTQNLAG---GTEN---TLAAVLDKCVTPMGSRLLKRWIHQPIRDLEKLK 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R D +D L EQ L L+ + +R+L + P+ +T
Sbjct: 321 KRQDIIDTL-QKEQRIEPLQPLLQNV-GDMERILARVALRSARPRDLTH----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+TAL LP +AK K+ + L A + + +E +A +++ I E + +
Sbjct: 368 ---------LRTALAQLPDIAKNAKNLTASLDALVAQIGDFSELHALLKRAIIETPPQLI 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V I G + LD R ++ + NL + RE + LK+ FN
Sbjct: 419 RDGGV-----------IAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKIGFN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I K P +++ N EL + + A G +
Sbjct: 468 AVHGYYIQISQGQAH-KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGASLALEKQL 526
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L D + + + L A L LD++ N S Y RP F+ + I GG
Sbjct: 527 YDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLN----YVRPTFSLQRGVNIKGG 582
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + D FI N +F++ ++++VTGPNM GKSTY++Q+ LI ++A IG +VPA
Sbjct: 583 RHPVVEQVLKDPFIANPVFLNAQRHLLVVTGPNMGGKSTYMRQIALISLMAYIGSFVPAD 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM E A ++ +E+SL+++DE+GR TS+ D
Sbjct: 643 SAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEKSLVLIDEIGRGTSTYD 702
Query: 479 GFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L ++ T+FA+H L+ L + V +H + + F ++
Sbjct: 703 GLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAREHQDSIVFMHSVQ 762
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+G YGL +A +AG+P VI+ A+
Sbjct: 763 EGAAS-KSYGLAVAALAGVPKQVIQLAK 789
>gi|407921775|gb|EKG14913.1| hypothetical protein MPH_07813 [Macrophomina phaseolina MS6]
Length = 472
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/398 (33%), Positives = 231/398 (58%), Gaps = 14/398 (3%)
Query: 235 KLPFNNRQG--FYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
K+P+++ FY+ + D++ + LP F + K I C T++L N + A E
Sbjct: 16 KMPWSSSPNWRFYIQLNATDLENRILPPVFTNIHKRKALIECQTVDLMKRNQKIVDAHNE 75
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
+ ++ L R ++ L + E + +LDMI +SFAH ++++ YTRP T+
Sbjct: 76 VVCLSNKAIQDLAVDTRAYMASLYRVGESIAMLDMI-SSFAHLVTSQ---EYTRPRLTDT 131
Query: 352 GPLAIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
LAI GRHPI E I + +FIPN+ + +E I+TG NMSGKSTY++ V L+ ++AQ
Sbjct: 132 --LAIKAGRHPIREKIQSANFIPNDFYATEGQRFQIITGCNMSGKSTYIRSVALMSVMAQ 189
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG + PA ++++ + ++F R+ D++E+N STF EM+E AF+++N+S+ S+ ++DEL
Sbjct: 190 IGMFAPAQYASMPIRSQLFARVSLDDSIEANVSTFAAEMREMAFILRNISKDSIAIIDEL 249
Query: 471 GRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR- 529
GR TS+ DG AIA S E L+ +A FA+H +L+ + V LH V +R N
Sbjct: 250 GRGTSTRDGLAIALSIAEALIDSRALVWFATHFGDLANILAERSGVVNLHLAVNVRENGG 309
Query: 530 -LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME--INCLQY 586
++ +++ +GP V H GL LA + LP V+ETA +++++ ++ +R + + L+
Sbjct: 310 VINMLYKVAEGPVTVQHCGLGLARIVSLPPEVLETAEELSTQLQQRTKRRQKASVTILRE 369
Query: 587 KQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFI 624
++ +++ H + L+ + D E + + L+ L+ F+
Sbjct: 370 RRRKLILHLKEHLLHAQSGAMDGEVLANWLKGLQREFV 407
>gi|117619909|ref|YP_858166.1| DNA mismatch repair protein MutS [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|189030438|sp|A0KPG5.1|MUTS_AERHH RecName: Full=DNA mismatch repair protein MutS
gi|117561316|gb|ABK38264.1| DNA mismatch repair protein MutS [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 860
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 172/570 (30%), Positives = 283/570 (49%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L +L +L T T G+RLL+ + QP++D +
Sbjct: 278 MDAATRRNLELTQNL------AGGHDNTLSAVLDCTATPMGSRLLKRWIHQPIRDQVILK 331
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R + EL+ + L+ L LR+ + +RVL + P+ +T
Sbjct: 332 GRQSTIKELI-EQNLYDELGGLLRQV-GDVERVLARLALRSARPRDLTR----------- 378
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ A LP L ++L +++ + +V + + AS + ++++ V
Sbjct: 379 ---------LRQAFAQLPELQRLLAESE-------HEAVQQLRERASTFPELLDLLERAV 422
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ VP V + I+ G + LD R + ++ + + R + LK+ +N
Sbjct: 423 ME--VPPVL-IRDGGVIRDGFNQELDELRDLANGATASLARIEERERLLTGINTLKVGYN 479
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GFY+ + + +P+ +I+ NN EL + +A + +
Sbjct: 480 KVHGFYIEVSRANSH-LVPAHYIRRQTLKNNERYIIDELKKYEDKVLTAQAQALALEKRL 538
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAID 357
E L+DA+ + L A L LD++ N A T+ Y P + + I+
Sbjct: 539 YEELLDALLPHLGDLQESAAALAELDVLANLAERAETLD------YRCPTLIDEDQILIE 592
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D FI N I + + M+I+TGPNM GKSTY++Q LIV+LA IG +VP
Sbjct: 593 AGRHPVVEQVMTDPFIANPINLQRSRRMLIITGPNMGGKSTYMRQTALIVLLAHIGAFVP 652
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + RSL++MDE+GR TS+
Sbjct: 653 ADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLMDEIGRGTST 712
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C E L S + AYT+FA+H L+ L + + +H V + + F
Sbjct: 713 YDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMEGLANVHLDAVEHGDTIAFMHA 772
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++G YGL +A +AG+P +VI+ AR
Sbjct: 773 VQEGAASR-SYGLQVAALAGVPKSVIQQAR 801
>gi|254242318|ref|ZP_04935640.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 2192]
gi|126195696|gb|EAZ59759.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 2192]
Length = 855
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 170/586 (29%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 266 LDGASRRNLELDINL------SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 363 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 415 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 471 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 530 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ NN+ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLETPFVVNNLPLDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+P+ VI+ AR + +KR+E L ++
Sbjct: 766 SQ-SYGLAVAQLAGVPAPVIQRAR--------EHLKRLETTSLPHE 802
>gi|21674323|ref|NP_662388.1| DNA mismatch repair protein MutS [Chlorobium tepidum TLS]
gi|44888223|sp|Q8KCC0.1|MUTS_CHLTE RecName: Full=DNA mismatch repair protein MutS
gi|21647498|gb|AAM72730.1| DNA mismatch repair protein MutS [Chlorobium tepidum TLS]
Length = 878
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 181/604 (29%), Positives = 289/604 (47%), Gaps = 89/604 (14%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLEII + G+ N SL ++ TK G RLLR LL PL+ +E
Sbjct: 277 MTLDIQTCRNLEIISSMQD---GSLNG--SLLEVIDRTKNPMGARLLRRWLLHPLRKLEP 331
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNA---- 116
+ R D + EL+ ++ G+ L ++D++ A
Sbjct: 332 VVRRHDAVGELLDAPEMREGIRGML----------------------GGIIDLERALARI 369
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFL-------------LANIYRSVCENEK 163
S+ + + L ++L +P L +L+ ++S LA + E
Sbjct: 370 ATSRAMPREVRQLGSSLAMIPQLKSLLEGSKSLRLRELALRLDPLPELAETIEKALDAEA 429
Query: 164 YASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGI-DGLLDIARRSFCDTSEAVHNLA 222
++R D + R + A + AI G D LL+I ++
Sbjct: 430 SGTLR---------DGGYIRAGYHAELDELRAISSGARDRLLEIQQQE------------ 468
Query: 223 NKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTF--IQVVKHGNNIHCSTL---E 277
R+ + LK+ +N G+Y+ + + K+P + Q + + L E
Sbjct: 469 ---RQRTSISTLKVQYNKVFGYYIEVSRAN-SDKVPEYYEKKQTLVNAERYTIPALKEYE 524
Query: 278 LASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTIST 337
L KS E + E+C I E + + A L LD + FA S
Sbjct: 525 EKILTAEEKSQLLEHQLFQELCA-----MIAEQAASIQTTAAALAELDCLA-CFA---SC 575
Query: 338 KPVDRYTRPHFTENGPLAIDGGRHPILESI---HNDFIPNNIFISEAANMVIVTGPNMSG 394
Y RP E L+I GRHP+LE I ++ N+ + ++I+TGPNM+G
Sbjct: 576 ADEFGYCRPVMNEGTELSIRAGRHPVLERILGADEPYVANDCQVGSEQQLLIITGPNMAG 635
Query: 395 KSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAF 454
KS+YL+QV L+V+LAQ+GC+VPA + I +VDRIFTR+G DNL S STF+ EM E A
Sbjct: 636 KSSYLRQVGLVVLLAQVGCFVPAESAEIGLVDRIFTRVGASDNLTSGESTFLVEMNEAAS 695
Query: 455 VMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIY 513
++ N +ERSL+++DE+GR TS+ DG +IAWS CE++ L++ T+FA+H L+EL + +
Sbjct: 696 ILNNATERSLLLLDEIGRGTSTFDGMSIAWSMCEYIHDQLRSRTLFATHYHELAELESRF 755
Query: 514 PNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+ + VV + + F ++ G YG+ +A++AG+P VIE AR I + + +
Sbjct: 756 ERIVNFNATVVETADTVIFLRKIVRGASD-NSYGIEVAKMAGMPPEVIERAREILAGMER 814
Query: 574 KEVK 577
+EV+
Sbjct: 815 REVE 818
>gi|296188728|ref|ZP_06857115.1| DNA mismatch repair protein MutS [Clostridium carboxidivorans P7]
gi|296046655|gb|EFG86102.1| DNA mismatch repair protein MutS [Clostridium carboxidivorans P7]
Length = 903
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 184/607 (30%), Positives = 321/607 (52%), Gaps = 64/607 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S RNLE+ E L +KK SL ++ T T G R LR + QPL + +
Sbjct: 262 MAIDINSRRNLELTETLRD-----KSKKGSLLWVMDRTNTAMGGRQLRKWIEQPLINSSS 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++EL++N + L + L++ + +R++ K++SK + NAK+
Sbjct: 317 IKLRLDSVEELLNNLSVHEDLKEALKEIY-DIERLVG-------KISSKNV---NAKE-- 363
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I LK ++ +P++ K+L + ++ LL N+ + E + I E++D+ ++
Sbjct: 364 -----LISLKGSIKKIPIIKKMLSNFETTLLHNMGVKLDE-------LQDIYEILDKAII 411
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P ++ + IK G +G +D + + + + +L N RE + +LK+ +N
Sbjct: 412 DT--PSISLKEGNL-IKEGYNGEVDELKLAKAHGKDWIASLENSEREITGIKSLKVGYNK 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG-------ECY 293
G+Y+ + ++ +I+ N T L + + A + +
Sbjct: 469 VFGYYIEVTKSNLSSIPEGRYIRKQTLANAERYITPSLKEMEDKILGAEEKLINLEYDIF 528
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
I +E VD ++E +++ E+ CL S TI+ + + Y +P +
Sbjct: 529 IDVRDKIEKQVDRMQETAKIIS---EIDCL------SSLATIALE--NNYCKPEISSKED 577
Query: 354 LAIDGGRHPILESI--HNDFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I+ GRHP++E + FI N+ I+ + ++I+TGPNM+GKSTY++QV LIV++AQ
Sbjct: 578 ICIEEGRHPVVEKMISSGSFISNDTVINTSDEQLLIITGPNMAGKSTYMRQVALIVLMAQ 637
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + I V D+IFTR+G D+L + STFM EM E + +++N + +SLI++DE+
Sbjct: 638 IGSFVPAKKAVISVCDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATNKSLILLDEV 697
Query: 471 GRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
GR TS+ DG +IAWS E++ S LK T+FA+H L++L +I VK ++ V ++
Sbjct: 698 GRGTSTYDGLSIAWSVIEYICSSKKLKCKTLFATHYHELTKLESIIEGVK--NYSVSVKE 755
Query: 528 NRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCL 584
D F ++ G YG+ +A++AGLP VIE A+ I + I ++ +++N +
Sbjct: 756 IGSDIVFLRKIIRGGADQ--SYGIEVAKLAGLPDKVIERAKEILNSIETEKSSDIDVNEI 813
Query: 585 QYKQIQM 591
IQ+
Sbjct: 814 SNNNIQV 820
>gi|440682554|ref|YP_007157349.1| DNA mismatch repair protein MutS [Anabaena cylindrica PCC 7122]
gi|428679673|gb|AFZ58439.1| DNA mismatch repair protein MutS [Anabaena cylindrica PCC 7122]
Length = 859
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 169/587 (28%), Positives = 289/587 (49%), Gaps = 55/587 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + SL L T T G R LR LLQPL DI+ I
Sbjct: 300 VDHQTRRNLEITQTVRDGTF-----HGSLLWALNRTSTAMGGRALRRWLLQPLLDIKGIK 354
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+R D + EL++N L L Q LR+ + +++T + A +
Sbjct: 355 SRQDTIQELVTNTPLRQDLRQLLRQI------------YDLERLTGR------AGSGRAN 396
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L +L LP L+ + +AQS L + +K ++ + + + + ++ +
Sbjct: 397 ARDLVALADSLSRLPELSYLASEAQSPFLKAL-------QKVPAVLEELAKKLQLHIVES 449
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
++ ++ I+ GI+ LD + + + + NL R +PNLK+ FN
Sbjct: 450 PPIYL---KEGGLIRPGINPQLDERKATVEGDQQWIANLEVDERVRTGIPNLKVGFNKTF 506
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+SI + ++P +I+ N T +L R +A + A
Sbjct: 507 GYYISI-SRSKSDQVPDNYIRKQTLTNEERYITPDLKEREARILTARDDLNQLEYEIFAA 565
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L + + ++ ++ + +D++ + Y RP + + GRHP
Sbjct: 566 LREEVGSHAEIIRNISRAVAAVDVLCGLAELAVHQG----YCRPEMLAGREIEVVDGRHP 621
Query: 363 ILES--IHNDFIPNNIFIS-------------EAANMVIVTGPNMSGKSTYLQQVCLIVI 407
++E F+PN+ + E ++VI+TGPN SGKS YL+QV LI +
Sbjct: 622 VVEQSLPAGFFVPNSTGLGGETNREGAEDTEGEKPDLVILTGPNASGKSCYLRQVGLIQL 681
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+G +VPA + + V DRIFTR+G VD+L + STFM EM ETA ++ + + +SL+++
Sbjct: 682 MAQVGSFVPARSARLGVCDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATAKSLVLL 741
Query: 468 DELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
DE+GR T++ DG +IAW+ E+L + +++ TIFA+H L+ELA+I PNV V
Sbjct: 742 DEIGRGTATFDGLSIAWAVAEYLAVEIQSRTIFATHYHELNELASIVPNVANYQVTVKEL 801
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++ F Q++ G YG+ +AGLP+ VI+ A+ + +I K
Sbjct: 802 PDQIIFLHQVQPGGAD-KSYGIEAGRLAGLPAVVIKRAKQVMGQIEK 847
>gi|229845541|ref|ZP_04465669.1| DNA mismatch repair protein [Haemophilus influenzae 6P18H1]
gi|229811557|gb|EEP47258.1| DNA mismatch repair protein [Haemophilus influenzae 6P18H1]
Length = 861
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 178/626 (28%), Positives = 301/626 (48%), Gaps = 60/626 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 267 IQLDAATRRNLELTQNLSG---GTEN---TLASVLDKCVTPMGSRLLKRWIHQPIRDVEK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 321 LKQRQQTITEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+TAL+ +P L +++ L ++ + + K + +R
Sbjct: 370 -----------LRTALEQIPALRTIVQQKTPLFLTALFSQIADFSKQCDLLQR------- 411
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
L P + R A G LD R ++ + NL + RE + LK+
Sbjct: 412 -ALIETPPLLIRDGGVIA--EGYHAELDEWRMLSDGATQYLENLEKRERESTGIDTLKIG 468
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
FN G+Y+ I K P +++ N EL + + G +
Sbjct: 469 FNAVHGYYIQISQGQSH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALEK 527
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLA 355
+ L D + + L L + L LD++VN A T++ Y P F + +
Sbjct: 528 QLYDELFDLLLPHLGTLQLASLALSELDVLVNLAERADTLN------YVMPTFCDEVSVK 581
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+ GRHP++E + D FI N + ++ +++I+TGPNM GKSTY++Q LI +LA IG +
Sbjct: 582 IENGRHPVVEQVLKDPFIANPVELNHNRHLLIITGPNMGGKSTYMRQTALITLLAYIGSF 641
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM E A ++ +E+SL+++DE+GR T
Sbjct: 642 VPADNARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEQSLVLIDEIGRGT 701
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+C E L +++ T+FA+H L+ L + +H + NN + F
Sbjct: 702 STYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIHLDALEHNNTIAFM 761
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLY 593
++DG YGL +A +AG+P +VI+ A+ +++ K + +QIQ L
Sbjct: 762 HAVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKTSGHSAD------QQIQALR 814
Query: 594 HAAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A++ L
Sbjct: 815 EANHNQGELLF-EQETDALREAIEKL 839
>gi|229847188|ref|ZP_04467292.1| DNA mismatch repair protein [Haemophilus influenzae 7P49H1]
gi|229809864|gb|EEP45586.1| DNA mismatch repair protein [Haemophilus influenzae 7P49H1]
Length = 861
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 178/626 (28%), Positives = 303/626 (48%), Gaps = 60/626 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 267 IQLDAATRRNLELTQNLSG---GTEN---TLASVLDKCVTPMGSRLLKRWIHQPIRDVEK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 321 LKQRQQAIAEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+TAL+ +P L +++ S L ++ + + + + +R
Sbjct: 370 -----------LRTALEQIPALRTIVQQKTSPFLTALFSQIADFSEQCDLLQR------- 411
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
L P + R A G + LD R ++ + NL + RE + LK+
Sbjct: 412 -ALIETPPLLIRDGGVIA--EGYNTELDEWRMLSDGATQYLENLEKRERESTGIDTLKIG 468
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
FN G+Y+ I K P +++ N EL + + G +
Sbjct: 469 FNAVHGYYIQISQGQAH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALEK 527
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLA 355
+ L D + + L L + L LD++VN A T++ Y P F + +
Sbjct: 528 QLYDELFDLLLPHLGALQLASLALSELDVLVNLAERADTLN------YVMPTFCDEVNVK 581
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+ GRHP++E + D FI N + ++ +++I+TGPNM GKSTY++Q LI +LA IG +
Sbjct: 582 IENGRHPVVEQVLKDPFIANPVELNHNRHLLIITGPNMGGKSTYMRQTALITLLAYIGSF 641
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM E A ++ +E+SL+++DE+GR T
Sbjct: 642 VPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEQSLVLIDEIGRGT 701
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+C E L +++ T+FA+H L+ L + +H + NN + F
Sbjct: 702 STYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIVNIHLDALEHNNSIAFM 761
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLY 593
++DG YGL +A +AG+P +VI+ A+ +++ K + +QIQ L
Sbjct: 762 HAVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSHSAD------QQIQALR 814
Query: 594 HAAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A++ L
Sbjct: 815 EANHNQGELLF-EQETDALREAIEKL 839
>gi|224369489|ref|YP_002603653.1| DNA mismatch repair protein MutS [Desulfobacterium autotrophicum
HRM2]
gi|259511164|sp|C0QFS1.1|MUTS_DESAH RecName: Full=DNA mismatch repair protein MutS
gi|223692206|gb|ACN15489.1| MutS [Desulfobacterium autotrophicum HRM2]
Length = 895
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 191/609 (31%), Positives = 303/609 (49%), Gaps = 76/609 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID S RNLE+++ + TS+KK SL +L T T G RLL+A + PL ++ I
Sbjct: 276 IDDRSCRNLELLKNIQ-----TSDKKGSLISVLDCTITAMGGRLLKAWIRYPLISMDGIE 330
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E N G+ LR K+ + +++ SK+
Sbjct: 331 ARLDAVAEAKENP----GIRNSLRTHLKD--------VYDLERLGSKI------SMGHAN 372
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ LK +L LPLL K L + LL + + EK ++ + ++I++ +
Sbjct: 373 PRDLTALKISLYKLPLLFKDLNQLSASLLQG--HGIEDREKVSTELFELADLINQ-TIRE 429
Query: 183 RVPFVARTQQ--CFAIKGGIDGLLDIAR--RSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P C +D +L+IAR RS+ + A K +E+ L +LK+ F
Sbjct: 430 DAPLALNEGGIICDGYSPELDEILEIARNGRSWIAKTGA------KEKEKTGLSSLKIKF 483
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGE-- 291
N G+++ + Q ++P +I+ N T EL LN + + ++ E
Sbjct: 484 NKVFGYFIEVSKIQSQ-QVPDHYIRKQTLVNAERFITDELKEVESKVLNAQERRSSLEYA 542
Query: 292 --CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
C +R E++V + LAEV +L + +T + YTRP
Sbjct: 543 LFCKVR-----ESIVQRTPSIFKIAQFLAEVDVVLALA--------TTAEENNYTRPALN 589
Query: 350 ENGPLAIDGGRHPILES--IHNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIV 406
++ L I+ GRHP++E + +IPN+I + ++ V I+TGPNM+GKST L+QV LI
Sbjct: 590 KDQVLDIEDGRHPVVEKMVVGERYIPNSIRLDNTSDQVQIITGPNMAGKSTVLRQVALIS 649
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
++AQ+G +VPA + + ++DRIFTR+G +DNL STFM EM+ETA ++ N E SL++
Sbjct: 650 LMAQMGSFVPAARADLCIIDRIFTRVGALDNLSLGQSTFMVEMEETANIVNNAKENSLVI 709
Query: 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAY---TIFASHMENLSELATIYPNVKILHFYV 523
+DE+GR TS+ DG +IAW+ E+L L T+FA+H L+ L + P VK + V
Sbjct: 710 LDEIGRGTSTFDGMSIAWAVAEYLHDLDGKGVKTLFATHYHELTRLEKLKPRVKNFNIAV 769
Query: 524 VIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRIT----------K 573
N+ + F +L G + YG+ +A +AG+P VI A+ I + I K
Sbjct: 770 KEFNDNIIFLRRLVPGGTN-KSYGIQVARLAGVPDAVITKAKQILASIEQSPDQVVTQDK 828
Query: 574 KEVKRMEIN 582
K+VK+ N
Sbjct: 829 KQVKKQTKN 837
>gi|398877437|ref|ZP_10632583.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM67]
gi|398202600|gb|EJM89441.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM67]
Length = 859
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 171/573 (29%), Positives = 283/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLNVLL 323
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + E+L L + + +R+L + NA+
Sbjct: 324 ARQTSITCLLDAYRFEKLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + ++ + + ++ + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPELQVAMAELEAPHIIQLAKTTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDSELDDLQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + + SA R ++
Sbjct: 472 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + + I G
Sbjct: 531 YEALLEDLISQLPPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVDEPCMRISQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAQLRAYTLFATHYFELTVLPEAQPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR R+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVIVRAREHLGRL 798
>gi|398984071|ref|ZP_10690380.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM24]
gi|399011304|ref|ZP_10713636.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM16]
gi|398118046|gb|EJM07786.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM16]
gi|398156188|gb|EJM44612.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM24]
Length = 847
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 174/575 (30%), Positives = 282/575 (49%), Gaps = 48/575 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 257 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 310
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + CL + E+L L + + +R+L + NA+
Sbjct: 311 ARQSSITCLLDRYRFEKLQPQLKEI-----GDIERILARIGLR------------NARPR 353
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + D ++ L + + + A++ ++ +ID
Sbjct: 354 -----DLARLRDALGALPELQVAMTDLEAPHLQGLATTTSTYPELAALLEKA--IIDNP- 405
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 406 -----PAVIRDGGV--LKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 458
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 459 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 517
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 518 YEALLEDLISQLPPLQDTASALAELDVLSNLAERALNLD----LNCPRFVTEPCMRISQG 573
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 574 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 633
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 634 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 693
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 694 GLSLAWAAAERLAHLRAYTLFATHYFELTVLPEAEPLVANVHLNATEHNERIVFLHHVLP 753
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
GP YGL +A++AG+PS VI AR SR+ +
Sbjct: 754 GPASQ-SYGLAVAQLAGVPSEVIVRAREHLSRLEE 787
>gi|347753700|ref|YP_004861265.1| DNA mismatch repair protein MutS [Bacillus coagulans 36D1]
gi|347586218|gb|AEP02485.1| DNA mismatch repair protein MutS [Bacillus coagulans 36D1]
Length = 875
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 181/597 (30%), Positives = 303/597 (50%), Gaps = 65/597 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+NID S RNLE+ E + KK SL +L T T G RLL+ + +PL E
Sbjct: 265 LNIDYYSKRNLELTETIRG-----QGKKGSLLWLLDETMTAMGGRLLKQWIGRPLLKQEK 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL ++ +++ F +E R + +++ +V + NA+
Sbjct: 320 IEARLQMVETFLNH------------YFEREDIRERLKEVYDLERLAGRVAFGNVNAR-- 365
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--E 177
+I LK +L +P + V++ +S E++K A++ E+ D E
Sbjct: 366 -----DLIQLKCSLQQIPGIRAVMESLES----------PESKKLAALLDPCEELTDLLE 410
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P + + I+ G + LD R + + + + +L RE + +LK+
Sbjct: 411 RAIEDNPPVSVK--EGGMIRDGYNEELDRYRDASKNGKQWIASLERDERERTGIKSLKVG 468
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELA----SLNVRNKSA----A 289
+N G+Y+ + ++ +++ G TL A + ++ K A A
Sbjct: 469 YNRVFGYYIEVTKANLH---------LLEEGRYERKQTLANAERFITPELKEKEALILQA 519
Query: 290 GECYIRTEICLEALVDA-IREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
E I E L + A ++E + L LA+ + +D ++ SFA +S K YT+P F
Sbjct: 520 EERMIDLEYELFTEIRAHVKEFIPRLQRLAKAVSTID-VLQSFA-VVSEK--RHYTKPVF 575
Query: 349 TENGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406
E+G L I GRHP++E + ++PN+ + E ++++TGPNMSGKSTY++Q+ L V
Sbjct: 576 REDGVLKITEGRHPVVEKVLDSQSYVPNDCLMDENREILLITGPNMSGKSTYMRQIALTV 635
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
ILAQIGC+VPA + + V DRIFTR+G D+L S STFM EM E + N +ERSLI+
Sbjct: 636 ILAQIGCFVPAREAELPVFDRIFTRIGAADDLISGQSTFMVEMLEAKNAIANATERSLIL 695
Query: 467 MDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
DE+GR TS+ DG A+A + E++ + A T+F++H L+ L+T ++ +H +
Sbjct: 696 FDEIGRGTSTYDGMALAQAMIEYIHDEIGAKTLFSTHYHELTALSTELGKLQNVHVSAME 755
Query: 526 RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEIN 582
+N ++ F ++K+GP YG+ +A++AGLP VI A I + ++ ++N
Sbjct: 756 QNGKVVFLHKIKEGPAD-KSYGIHVAKLAGLPEQVICRAEKILHALENQDNGETQMN 811
>gi|303253454|ref|ZP_07339596.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248649|ref|ZP_07530663.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302647698|gb|EFL77912.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306854860|gb|EFM87049.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 864
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 172/568 (30%), Positives = 277/568 (48%), Gaps = 50/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E +
Sbjct: 267 LDAATRRNLELTQNLAG---GTEN---TLAAVLDKCVTPMGSRLLKRWIHQPIRDLEKLK 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R D +D L EQ L L+ + +R+L + P+ +T
Sbjct: 321 KRQDIIDTL-QKEQRIEPLQPLLQNV-GDMERILARVALRSARPRDLTR----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+TAL LP +AK K+ + L A + + +E +A + + I E + +
Sbjct: 368 ---------LRTALAQLPDIAKNAKNLTASLDALVAQIGDFSELHALLERAIIETPPQLI 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V I G + LD R ++ + NL + RE + LK+ FN
Sbjct: 419 RDGGV-----------IAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKIGFN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I K P +++ N EL + + A G + +
Sbjct: 468 AVHGYYIQISQGQAH-KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGASLVLEKQL 526
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L D + + + L A L LD++ N S Y RP F+ + I GG
Sbjct: 527 YDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLN----YVRPTFSLQRGVNIKGG 582
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + D FI N +F++ ++++VTGPNM GKSTY++Q+ LI ++A IG +VPA
Sbjct: 583 RHPVVEQVLKDPFIANPVFLNAQRHLLVVTGPNMGGKSTYMRQIALISLMAYIGSFVPAD 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM E A ++ +E SL+++DE+GR TS+ D
Sbjct: 643 SAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLVLIDEIGRGTSTYD 702
Query: 479 GFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L ++ T+FA+H L+ L + V +H + + F ++
Sbjct: 703 GLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAREHQDSIVFMHSVQ 762
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+G YGL +A +AG+P VI+ A+
Sbjct: 763 EGAAS-KSYGLAVAALAGVPKQVIQLAK 789
>gi|193213235|ref|YP_001999188.1| DNA mismatch repair protein MutS [Chlorobaculum parvum NCIB 8327]
gi|238692657|sp|B3QPY5.1|MUTS_CHLP8 RecName: Full=DNA mismatch repair protein MutS
gi|193086712|gb|ACF11988.1| DNA mismatch repair protein MutS [Chlorobaculum parvum NCIB 8327]
Length = 876
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 179/591 (30%), Positives = 293/591 (49%), Gaps = 63/591 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLEII + G+ N SL ++ TK G RLLR LL PL+ +E
Sbjct: 275 MTLDIQTRRNLEIISSMQD---GSLNG--SLLEVIDRTKNPMGARLLRRWLLHPLRKLEA 329
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R D ++EL+ ++ + +E R L ++ +++ S+
Sbjct: 330 VVQRHDAVEELLESDSM------------REESRQLLGGIIDLERALARI------ATSR 371
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV--IDED 178
+ + LL ++ +P L +L + CE ++ + R+ + + E
Sbjct: 372 AMPREVRLLGSSFALIPQLKAML-------------ASCEAQRLRHLADRLDSLPELAET 418
Query: 179 VLHARVPFVART-QQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ A P + T + I+ G LD R + + + R + + LK+
Sbjct: 419 IERALDPEASGTLRDGGYIRAGYHEELDELRAISSGARDRLLEIQQAERSKTSISTLKVQ 478
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTF--IQVVKHGNNIHCSTL---ELASLNVRNKSAAGEC 292
+N G+Y+ + + K+P + Q + + L E L KS E
Sbjct: 479 YNKVFGYYIEVSRAN-SDKVPEYYEKKQTLVNAERYTIPALKEYEEKILTAEEKSQFLEH 537
Query: 293 YIRTEIC--LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
+ E+C + A +I++ + LAE+ CL FA S RY RP E
Sbjct: 538 RLFQELCAAVAAEAASIQKTAAA---LAELDCL-----ACFA---SCADEYRYCRPAMNE 586
Query: 351 NGPLAIDGGRHPILESI---HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
L+I GGRHP+LE I ++ N+ + ++I+TGPNM+GKS+YL+Q L+V+
Sbjct: 587 GTELSITGGRHPVLERILGADEPYVANDCRVGSDQQLLIITGPNMAGKSSYLRQAGLVVL 646
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
LAQ+G +VPA + I +VDRIFTR+G DNL S STF+ EM E A ++ N +ERSL+++
Sbjct: 647 LAQVGSFVPAESAEIGLVDRIFTRVGASDNLTSGESTFLVEMNEAASILNNATERSLLLL 706
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
DE+GR TS+ DG +IAWS CE + L+A T+FA+H L+EL + + + + VV
Sbjct: 707 DEIGRGTSTFDGMSIAWSMCEFIHDRLRARTLFATHYHELAELESRFERIVNFNATVVET 766
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
+ + F ++ G YG+ +A++AG+P VIE AR I + + ++EV+
Sbjct: 767 ADTVIFLRKIVRGASD-NSYGIEVAKMAGMPPEVIERAREILAGMERREVE 816
>gi|148270149|ref|YP_001244609.1| DNA mismatch repair protein MutS [Thermotoga petrophila RKU-1]
gi|166232148|sp|A5ILG0.1|MUTS_THEP1 RecName: Full=DNA mismatch repair protein MutS
gi|147735693|gb|ABQ47033.1| DNA mismatch repair protein MutS [Thermotoga petrophila RKU-1]
Length = 793
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 163/578 (28%), Positives = 288/578 (49%), Gaps = 50/578 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +V NL +I ++ ++LF +L T+T G RLL+ +L PL D +
Sbjct: 250 MILDSATVENLSLI---------PGDRGKNLFDVLNNTETPMGARLLKKWILHPLVDRKQ 300
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ +++L+S+ L L ++ +R++ + ++
Sbjct: 301 IEERLETVEKLVSDRMNLEELRDLLSNV-RDVERIVSRVEY-----------------NR 342
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ ++ L+ L+ +P L ++L +F +++++ E+ + +R +++D
Sbjct: 343 SVPRDLVALRETLEIIPKLNEIL---STF---GVFKNLAFPERLLDLLQR---AVEDD-- 391
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A P + IK G LD R E + K R+ + LK+ +N
Sbjct: 392 PAGSPGEGK-----VIKRGFSPELDEYRDLLEHAEERLKEFEEKERKRTGIQKLKVGYNQ 446
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + ++ K+P + + N+ T EL + +A +
Sbjct: 447 VFGYYIEVTKANLD-KIPDDYERKQTLVNSERFITPELKEFETKIMAAKERIEELEKELF 505
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ + + +++ +L ++E L +D++ I + YT+P F+E G L I GGR
Sbjct: 506 KNVCEEVKKHKEILLKISEELAKIDVLSTLAYDAI----LYSYTKPIFSE-GRLEIKGGR 560
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPI+E +F+ N+I++ V++TGPNMSGKST+++QV LI ++AQIG +VPA +
Sbjct: 561 HPIVERFTQNFVENDIYMDNERRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKA 620
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
+ V DRIFTRMG D+L STF+ EM E A ++ +E+SL+++DE+GR TS+ DG
Sbjct: 621 ILPVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKSTEKSLVLLDEVGRGTSTQDGV 680
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+IAW+ E L+ +FA+H L+EL +P V+ V + F ++ DG
Sbjct: 681 SIAWAISEELIKRGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGV 740
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
YG+ +A++AG+P VI A I R K K+
Sbjct: 741 AD-RSYGIEVAKIAGIPDRVINRAYEILERNFKNNTKK 777
>gi|88798289|ref|ZP_01113875.1| DNA mismatch repair protein [Reinekea blandensis MED297]
gi|88779065|gb|EAR10254.1| DNA mismatch repair protein [Reinekea sp. MED297]
Length = 862
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 175/574 (30%), Positives = 280/574 (48%), Gaps = 61/574 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D+ + RNLEI + + +LF ++ T G+R LR L +PL+D + +
Sbjct: 269 LDSATRRNLEIDINVRG------EESHTLFALMDHCSTAMGSRRLRRWLNRPLRDQDQLR 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPK--ETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
R + L+ + F QF + + +RVL + +
Sbjct: 323 QRQAAVAILLDD----FRFEQFQQHLKPIGDIERVLARVALRSARP-------------- 364
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIG---EVIDE 177
+I L+ AL A D QS L C+N ++R ++ + +DE
Sbjct: 365 ---RDLIRLREALAAQ-------TDLQSLL------ETCDNNVLQTLRSQLNVDPKWLDE 408
Query: 178 --DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
+ P V R + I G D LD R + ++ + + R L +LK
Sbjct: 409 LRSAIRDNPPVVIR--EGGVIAEGYDHELDELRGLDSNAADFLAEMETTERNRTGLSSLK 466
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +N G+Y+ I K P + + N T EL + + SA R
Sbjct: 467 VGYNRVHGYYIEI-SKAQAADAPVEYTRRQTLKNAERFITPELKTFEDKALSARSRALAR 525
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR--YTRPHFTENGP 353
+ + LV + E++ L E L LD++VN AH DR + +P T
Sbjct: 526 EKHLYDELVQKLAENLPGLQQFCEGLIELDVLVN-LAHC-----ADRFDWNQPELTHQNI 579
Query: 354 LAIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
L I+GGRHP++E++++ F+PN+ +S M I+TGPNM GKSTY++QV LI +L IG
Sbjct: 580 LTIEGGRHPVVEALNDTPFVPNSTQLSSDCRMQIITGPNMGGKSTYMRQVALIALLGCIG 639
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I +DRIFTRMG+ D++ STFM EM ETA ++ N + SL++MDE+GR
Sbjct: 640 SFVPADRAVIGPLDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATPNSLVIMDEVGR 699
Query: 473 ATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TS+ DG ++AW+ E L+S ++A T+FA+H ++ L V+ +H ++RL
Sbjct: 700 GTSTFDGLSLAWASAEQLVSQVQALTLFATHYFEMTTLGETENAVQNVHLDATEHDDRLV 759
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
F ++++GP YG+ +A++AG+P TVI AR
Sbjct: 760 FLHRVQEGPAS-QSYGIQVAKLAGVPETVITRAR 792
>gi|291559008|emb|CBL37808.1| DNA mismatch repair protein MutS [butyrate-producing bacterium
SSC/2]
Length = 875
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 184/604 (30%), Positives = 302/604 (50%), Gaps = 57/604 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID++S RNLE+ E L KK SL +L TKT G R+LR + QPL D +
Sbjct: 270 MIIDSSSRRNLELCETLRD-----KQKKGSLLWVLDKTKTAMGARMLRNMVEQPLVDKKK 324
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D + L + L ++L + +R++ +K T+ D
Sbjct: 325 IEERYDAITTLTDQTIVREELREYLNPI-YDLERLMTKVSYK----TANPRD-------- 371
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I KT+L+ LP + VL++ + LL+ + + E ++ ED +
Sbjct: 372 -----MIAFKTSLELLPAIKTVLEECKDPLLSGLREDLDPLEDIHNLL--------EDSI 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + IK G +D +R+ + + + L + RE+ + NLK+ FN
Sbjct: 419 IEEPPLAIK--EGGIIKEGFKEDIDKLKRAKTEGKQWLMELEEREREKTGIKNLKIKFNK 476
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + +KD+ +P +I+ N+ +T EL L + Y
Sbjct: 477 VFGYYLDVTNSYKDL---VPDHYIRKQTLANSERYTTEELNQLADTILGSEDRLYALEYE 533
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ + + ++ ++ A V+ +D + S A+ + + RP G + I
Sbjct: 534 TYVMIRETLAGEMERISRTANVIAQIDALA-SLAYVAER---NHFVRPKLNVRGTIDIKD 589
Query: 359 GRHPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E I ND FI N+ ++ N V I+TGPNM+GKSTY++QV LIV++AQIG +V
Sbjct: 590 GRHPVVEQVIPNDMFISNDTYLDNKKNRVAIITGPNMAGKSTYMRQVALIVLMAQIGSFV 649
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +VDRIFTR G D+L S STFM EM E A +++N ++ SL+++DE+GR TS
Sbjct: 650 PAAKANIGIVDRIFTRAGASDDLASGQSTFMVEMSEVANILRNATKNSLLILDEIGRGTS 709
Query: 476 SSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFY-VVIRNNRLD 531
+ DG +IAW+ E++ + L A T+FA+H L+EL + +H Y + ++ D
Sbjct: 710 TFDGLSIAWAVVEYISNSKLLGAKTLFATHYHELTELEG---KIDSVHNYCIAVKEQGDD 766
Query: 532 FKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
F +K G YG+ +A++AG+P VI A+ I + + ++ + + Y +
Sbjct: 767 IVFLRKIVKGGADK--SYGVQVAKLAGVPDAVINRAKEIARELEEHDLTSGAKDIMPYGE 824
Query: 589 IQML 592
Q L
Sbjct: 825 AQQL 828
>gi|255036742|ref|YP_003087363.1| DNA mismatch repair protein MutS [Dyadobacter fermentans DSM 18053]
gi|254949498|gb|ACT94198.1| DNA mismatch repair protein MutS [Dyadobacter fermentans DSM 18053]
Length = 864
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 170/591 (28%), Positives = 297/591 (50%), Gaps = 71/591 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +VRNLE++ + L +L T T G R LR ++ PLKD I
Sbjct: 267 LDRFTVRNLELV-------YAQQEGGVPLIDILDHTVTPMGARQLRKWMVLPLKDKAPIE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL ++ +++E+L L + ++ + D++ L
Sbjct: 320 ERLSAVEHFLASEELHESLVGYFKQ----------------------IGDLER------L 351
Query: 123 ISSIILLKTALDALPLLAKVLKDA---QSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
IS + + + L L K LK + L I +K+AS G ++++
Sbjct: 352 ISKVAVRRINPRELVQLKKSLKQVAPVKQLLAGGIL------DKFASQLDACGALVEKID 405
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
R + Q ++ G+D LD + + + L N+ E + +LK+ +N
Sbjct: 406 KELRDDAPVLSNQGRMVQSGVDSELDELHAISYEGKDYLIKLQNREIERTGISSLKIAYN 465
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYI 294
G+YL + H Q K+P+ +I+ N T EL +N ++ +A E I
Sbjct: 466 KVFGYYLEVTHAH-QSKVPADWIRKQTLVNAERYITPELKEYEEKIMNAEDRISAIEFRI 524
Query: 295 RTEICLEA--LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
+E+ +A V AI+++ V++ L +++SFA ++Y +P +E
Sbjct: 525 FSELVQKAAEFVGAIQQNALVISALD--------VLSSFALAARK---NKYAKPVISEGN 573
Query: 353 PLAIDGGRHPILES---IHNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVIL 408
L I GRHP++E + ++PN++++ +++ ++I+TGPNM+GKS L+Q LIV++
Sbjct: 574 ELDIKEGRHPVIEQQLPVGESYVPNDVYLDDSSQQIIIITGPNMAGKSALLRQTALIVLM 633
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ+G +VPA +T+ +VD++FTR+G DNL STFM EM ETA ++ N+S +SL++MD
Sbjct: 634 AQMGSFVPARSATVGIVDKVFTRVGASDNLSRGESTFMVEMTETASILNNLSSKSLVLMD 693
Query: 469 ELGRATSSSDGFAIAWSCCEHLLSL---KAYTIFASHMENLSELATIYPNVKILHFYVVI 525
E+GR TS+ DG +IAW+ E+L + + T+FA+H L++LA +P +K + V
Sbjct: 694 EIGRGTSTYDGVSIAWAITEYLHNQSDCRPKTLFATHYHELNQLAEDFPRIKNFNVAVKE 753
Query: 526 RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+N++ F +LK G +G+ +A++AG+P ++ A I + K V
Sbjct: 754 VDNKVVFLRKLKPGGS-AHSFGIHVAQIAGMPQPIVLRASEIMQHLEKDHV 803
>gi|352102490|ref|ZP_08959237.1| DNA mismatch repair protein MutS [Halomonas sp. HAL1]
gi|350600041|gb|EHA16119.1| DNA mismatch repair protein MutS [Halomonas sp. HAL1]
Length = 853
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 177/620 (28%), Positives = 291/620 (46%), Gaps = 49/620 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S RNLEI L N +L +L T T G+RLL+ L +PL+ E +
Sbjct: 267 IDAASRRNLEIDINL------GGNSDNTLASVLDTCTTAMGSRLLKRWLNRPLRQREIVQ 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCH---FCFKPKKVTSKVLDVDNAKKS 119
R + L+S + L + L + +R+L + +P+ +
Sbjct: 321 NRHAGV-ALLSLVAAYMSLRETLSDV-GDVERILARVALYSARPRDLAR----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ AL LP L + L + ++ + R Y + + + E+
Sbjct: 368 ---------LRDALVTLPTLEQQLGEVENGSALDSLRPHIR--PYPEMADMLSRALVENP 416
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R A G D LD R + + + L + RE L NLK+ +N
Sbjct: 417 -----PVVIRDGGVIA--NGFDAELDEHRGMAENAGDYLVRLETRERERTGLANLKVGYN 469
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P Q + P+ +I+ N EL + SA R +
Sbjct: 470 RVHGYFIELPRSQAQ-QAPADYIRRQTLKNAERFIIPELKEFEDKALSAKSRALTREKWL 528
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ + + + L ++ L LD++ +FA + RP +E + I+ G
Sbjct: 529 YDRLLGELNDSLHALQSTSQALAELDVLC-AFAERAEAL---SWVRPTLSEATGIRIEAG 584
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+PN++ ++ +M+I+TGPNM GKSTY++Q LI +LA G +VPA
Sbjct: 585 RHPVVEQVSETPFVPNDVTLNPDQHMLIITGPNMGGKSTYMRQTALIALLAHCGSFVPAD 644
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G+ D+L STFM EM ETA ++ N +++SLI+MDE+GR TS+ D
Sbjct: 645 AAEIGPLDRIFTRIGSSDDLAGGRSTFMVEMTETANILHNATQQSLILMDEIGRGTSTFD 704
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E+L +A T+FA+H ++ L V +H + + F +++
Sbjct: 705 GLSLAWASAEYLAKGRALTLFATHYFEMTALPEHMEGVANIHLTATEHGDSIVFMHRIEA 764
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQR 598
GP YGL +A++AG+P VI+ AR + +++V Q L+ AA
Sbjct: 765 GPASQ-SYGLQVAQLAGVPGHVIKRAREKLMSLEQRDVDNTAQAPRTAPQQNDLFAAAPH 823
Query: 599 LICLKYSNQDEESI--RHAL 616
+ N D + + R AL
Sbjct: 824 PVVEALENVDMDGLTPREAL 843
>gi|218890155|ref|YP_002439019.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa LESB58]
gi|226723064|sp|B7V8C8.1|MUTS_PSEA8 RecName: Full=DNA mismatch repair protein MutS
gi|218770378|emb|CAW26143.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa LESB58]
Length = 855
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 266 LDGASRRNLELDINL------SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 363 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 415 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 471 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 530 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+P+ VI+ AR + +KR+E L ++
Sbjct: 766 SQ-SYGLAVAQLAGVPAPVIQRAR--------EHLKRLETTSLPHE 802
>gi|73669015|ref|YP_305030.1| DNA mismatch repair protein MutS [Methanosarcina barkeri str.
Fusaro]
gi|90109848|sp|Q46CE2.1|MUTS_METBF RecName: Full=DNA mismatch repair protein MutS
gi|72396177|gb|AAZ70450.1| DNA mismatch repair protein MutS [Methanosarcina barkeri str.
Fusaro]
Length = 900
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 186/590 (31%), Positives = 305/590 (51%), Gaps = 58/590 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ ++RNLEI++ + G N SL+ +L TKT G+R L+ LL+PL +E
Sbjct: 281 MILDSVTLRNLEIVKNVRDE--GDEN---SLYRILNHTKTPMGSRALKKWLLKPLLSVEK 335
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++EL + L + L +L ++ +R++ + NA+
Sbjct: 336 INYRLDAVEELTAKPLLRYDLRNWLSDV-RDIERLVGRVVYGNS----------NAR--- 381
Query: 121 TLISSIILLKTALDALP-LLAKVLKDAQSFLLANI---YRSVCENEKYASIRKRIGEVID 176
++ LK +L+ALP + +L++ +S +L +I S E E A + R ++D
Sbjct: 382 ----DLVALKKSLEALPPVRDSLLENIESTILNDIAVGLASFSELENLAEMIDRA--IVD 435
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
E + R + IK G + LD + ++ + + N K RE + +LK+
Sbjct: 436 EPPISVR--------EGGMIKSGYNAELDELKDIASNSRQWIANFQQKERERSGIKSLKV 487
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGE 291
+N G+Y+ + + + ++P +I+ N T EL L K+ A E
Sbjct: 488 GYNKIFGYYIEVTNAN-SSQVPEDYIRKQTMANAERFFTPELKEKESLILTANEKAIALE 546
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
I TEI L+ L RE L AE + LD++ + A + Y RP T++
Sbjct: 547 YEIFTEI-LQTLSAHSRE----LQETAERIGTLDVLTD-LAEVAEN---NNYIRPQLTDD 597
Query: 352 GPLAIDGGRHPILE-SIHNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILA 409
+ I GRHP++E ++H F+PN+ + N ++VTGPNM+GKSTY++Q LI I+A
Sbjct: 598 CKILIRDGRHPVVENTVHGGFVPNDTEMDCKENQFLLVTGPNMAGKSTYMRQTALIAIMA 657
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +VPA +++I ++D++FTR+G D+L S STFM EM E A ++ N S RSL+++DE
Sbjct: 658 QVGSFVPASYASIGIIDQVFTRIGAFDDLASGQSTFMVEMVELANILNNASPRSLVLLDE 717
Query: 470 LGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
+GR TS+ DG++IA + E L + + +FA+H L+ L VK H V
Sbjct: 718 IGRGTSTYDGYSIAKAVVEFLHNRGKVGVRALFATHYHQLTALEEKLKRVKNYHVAVKEE 777
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ L F ++ G YG+ +A +AG+P VIE A I + ++ V
Sbjct: 778 GHELVFLRKIVPGATD-RSYGIQVARLAGVPEKVIERANEILKELERENV 826
>gi|421179216|ref|ZP_15636812.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa E2]
gi|404547459|gb|EKA56457.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa E2]
Length = 855
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 266 LDGASRRNLELDINL------SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 363 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 415 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 471 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 530 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLPGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+P+ VI+ AR + +KR+E L ++
Sbjct: 766 SQ-SYGLAVAQLAGVPAPVIQRAR--------EHLKRLETTSLPHE 802
>gi|262379625|ref|ZP_06072781.1| DNA mismatch repair protein MutS [Acinetobacter radioresistens
SH164]
gi|262299082|gb|EEY86995.1| DNA mismatch repair protein MutS [Acinetobacter radioresistens
SH164]
Length = 883
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 170/582 (29%), Positives = 302/582 (51%), Gaps = 45/582 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEII+PL GTS LFH++ +T G+RLL L+QP++D +
Sbjct: 277 LDPVTRRNLEIIDPLFE--HGTS-----LFHLINECQTAMGSRLLSRTLMQPIRDTVILE 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +++L+ + + K + +RVL T++ D+ +++
Sbjct: 330 ARLDAIEQLVKG--YHEAPVRLVLKEISDIERVLSRIALG----TARPRDLVQLRQA--- 380
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
S I L+ AL V+ +S +L +Y+ + + + + +R+ I E+
Sbjct: 381 CSQIPFLRHALQP------VIDSKKSKMLHQLYQELGD---FKVLSERLSSAIVENP--- 428
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G D LD R+ + + +L + RE+ + LK+ +N
Sbjct: 429 --PVLLRDGNVIA--EGFDHELDELRKIRDHAGQFLIDLEIQEREQTGISTLKIGYNRVS 484
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + + P +I+ N T EL S + S+ R ++ E
Sbjct: 485 GYYIELTRAQAE-QAPEHYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKLLFEL 543
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ +R+D++ L +++ + +D++ N FA+ K + RP F+ + I GRHP
Sbjct: 544 LLEELRQDIASLQVMSSAIAQIDLLAN-FAYQARLK---SWNRPEFSPEVGIKIIAGRHP 599
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++ES+ + PN+ + M I+TGPNM GKST+++Q LI +LA G +VPA +
Sbjct: 600 VVESLSKTPYTPNDTSLDFNHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPAQSAR 659
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +DRIFTR+G+ D+L S STFM EM ET+ ++ + + +SL++MDE+GR TS+ DG +
Sbjct: 660 LGPIDRIFTRIGSADDLSSGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTYDGLS 719
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQLKD 538
+AW+C L +K +FA+H L+EL I +++V + N L +++
Sbjct: 720 LAWACVLDLTKRIKCLCLFATHYFELTELGQ---EAGIDNYHVTAKEMNGNLILLHKVQP 776
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
GP H GL +A++AG+P++VI+ A+ + K++ + ++
Sbjct: 777 GPASQSH-GLQVAKLAGIPASVIKEAQKRLKILEKQQQQHLQ 817
>gi|154483535|ref|ZP_02025983.1| hypothetical protein EUBVEN_01239 [Eubacterium ventriosum ATCC
27560]
gi|149735445|gb|EDM51331.1| DNA mismatch repair protein MutS [Eubacterium ventriosum ATCC
27560]
Length = 897
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 166/582 (28%), Positives = 286/582 (49%), Gaps = 45/582 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++ RNLE+ E L KK SL +L TKT G R LR + QPL E
Sbjct: 281 MILDTSTRRNLELCETLRE-----KQKKGSLLWVLDKTKTAMGARTLRNYIEQPLISKEE 335
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R ++EL + L ++L + +R+L ++
Sbjct: 336 IINRQKVIEELNKSMITRDELREYLAPI-YDLERLLSKISYRSANP-------------- 380
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I KT+L LP + ++ D +S L +IY + + + I +I E ++
Sbjct: 381 ---RDLIAFKTSLSMLPHIKNIIMDFKSPLFKDIYNRL-------DVLEDITTLISESIM 430
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + ++ I+ G + +D R + + + + +E + NLK+ +N
Sbjct: 431 DD--PPI-NIKEGGIIRTGYNEEIDRLRNAKTEGKTWLAEMEASEKESTGIKNLKIKYNK 487
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + + + ++P +++ N +T +L L A + +
Sbjct: 488 VFGYYIEVSNS-FKDQVPDYYVRKQTLTNAERYTTDKLKELEDVIMGAEDKLFSLEYNIF 546
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
A+ D I ++ + A+ + +D+ FA + Y +P E G + I GR
Sbjct: 547 TAIRDEIFNQINRIQQTAKAVAQIDV----FASLAFVADRNHYVKPKINEKGVIDIKDGR 602
Query: 361 HPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E + N FI NN F+ N + I+TGPNM+GKSTY++Q LIV++AQIG +VPA
Sbjct: 603 HPVVEKMMPDNTFIANNTFLDMNNNRLAIITGPNMAGKSTYMRQTALIVLMAQIGSFVPA 662
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++ I + D+IFTR+G D+L S STFM EM E A +++N + SL+++DE+GR TS+
Sbjct: 663 KYANISICDKIFTRVGASDDLASGQSTFMVEMTEVANILRNATANSLLILDEIGRGTSTF 722
Query: 478 DGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG +IAW+ EH+ L A T+FA+H L+EL P V V + + + F
Sbjct: 723 DGLSIAWAVVEHICDKKLLGAKTLFATHYHELTELEGTLPGVNNYCISVKEQGDDIVFLR 782
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
++ G YG+ +A++AG+P +V+ A+ + + ++ ++
Sbjct: 783 KIVAGGAD-KSYGIQVAKLAGVPESVLNRAKELVNELSNADI 823
>gi|107103134|ref|ZP_01367052.1| hypothetical protein PaerPA_01004203 [Pseudomonas aeruginosa PACS2]
gi|386057393|ref|YP_005973915.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa M18]
gi|451987800|ref|ZP_21935952.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 18A]
gi|347303699|gb|AEO73813.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa M18]
gi|451754559|emb|CCQ88475.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 18A]
Length = 846
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 257 LDGASRRNLELDINL------SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 311 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 353
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 354 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 405
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 406 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 461
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 462 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 520
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 521 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 576
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 577 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 636
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 637 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 696
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 697 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 756
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+P+ VI+ AR + +KR+E L ++
Sbjct: 757 SQ-SYGLAVAQLAGVPAPVIQRAR--------EHLKRLETTSLPHE 793
>gi|89892411|gb|ABD78993.1| HI0707-like protein [Haemophilus influenzae]
Length = 746
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 177/626 (28%), Positives = 302/626 (48%), Gaps = 60/626 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 152 IQLDAATRRNLELTQNLSG---GTEN---TLASVLDKCVTPMGSRLLKRWIHQPIRDVEK 205
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 206 LKQRQQAIAEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 254
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+TAL+ +P L +++ L ++ + + + + +R
Sbjct: 255 -----------LRTALEQIPALRTIVQQKTPPFLTALFSQIADFSEQCDLLQR------- 296
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
L P + R A G + LD R ++ + NL + RE + LK+
Sbjct: 297 -ALIETPPLLIRDGGVIA--EGYNTELDEWRMLSDGATQYLENLEKRERESTGIDTLKIG 353
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
FN G+Y+ I K P +++ N EL + + G +
Sbjct: 354 FNAVHGYYIQISQGQAH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALEK 412
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLA 355
+ L D + + L L + L LD++VN A T++ Y P F + +
Sbjct: 413 QLYDELFDLLLPHLGALQLASLALSELDVLVNLAERADTLN------YVMPTFCDEVSVK 466
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+ GRHP++E + D FI N + ++ +++I+TGPNM GKSTY++Q LI +LA IG +
Sbjct: 467 IENGRHPVVEQVLKDPFIANPVELNHNRHLLIITGPNMGGKSTYMRQTALITLLAYIGSF 526
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM E A ++ +E+SL+++DE+GR T
Sbjct: 527 VPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEQSLVLIDEIGRGT 586
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+C E L +++ T+FA+H L+ L + +H + NN + F
Sbjct: 587 STYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIHLDALEHNNSIAFM 646
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLY 593
++DG YGL +A +AG+P +VI+ A+ +++ K + +QIQ L
Sbjct: 647 HAVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSHSAD------QQIQALR 699
Query: 594 HAAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A++ L
Sbjct: 700 EANHNQGELLF-EQETDALREAIEKL 724
>gi|45645389|gb|AAS73294.1| DNA mismatch repair protein [Haemophilus influenzae]
Length = 861
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 178/627 (28%), Positives = 305/627 (48%), Gaps = 62/627 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 267 IQLDAATRRNLELTQNLSG---GTEN---TLASVLDKCVTPMGSRLLKRWIHQPIRDVEK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 321 LKQRQQAIAEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVID 176
L+TAL+ +P L +++ S L ++ + + +E++ +++ + E
Sbjct: 370 -----------LRTALEQIPALRTIVQQKTSPFLTALFSQIADFSEQWDLLQRALIET-- 416
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
P + R A G LD R ++ + NL + RE + LK+
Sbjct: 417 -------PPLLIRDGGVIA--EGYHAELDEWRMLSDGATQYLENLEKRERESTGIDTLKI 467
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
FN G+Y+ I K P +++ N EL + + G
Sbjct: 468 GFNAVHGYYIQISQGQAH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALE 526
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPL 354
+ + L D + + L L + L LD++VN A T++ Y P F + +
Sbjct: 527 KQLYDELFDLLLPHLGSLQLASLALSELDVLVNLAECADTLN------YVMPTFCDEVSV 580
Query: 355 AIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I+ GRHP++E + D FI N + ++ +++I+TGPNM GKSTY++Q LI +LA IG
Sbjct: 581 KIENGRHPVVEQVLKDPFIANPVEVNHNRHLLIITGPNMGGKSTYMRQTALITLLAYIGS 640
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +DRIFTR+G D+L S STFM EM E A ++ + +SL+++DE+GR
Sbjct: 641 FVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATAQSLVLIDEIGRG 700
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+C E L +++ T+FA+H L+ L + +H + NN + F
Sbjct: 701 TSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIHLDALEHNNTIAF 760
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++DG YGL +A +AG+P +VI+ A+ +++ K E +QIQ L
Sbjct: 761 MHAVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAE------QQIQAL 813
Query: 593 YHAAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A++ L
Sbjct: 814 REANHNQGEL-FFEQETDALREAIEKL 839
>gi|434398392|ref|YP_007132396.1| DNA mismatch repair protein MutS [Stanieria cyanosphaera PCC 7437]
gi|428269489|gb|AFZ35430.1| DNA mismatch repair protein MutS [Stanieria cyanosphaera PCC 7437]
Length = 871
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 180/580 (31%), Positives = 284/580 (48%), Gaps = 50/580 (8%)
Query: 3 IDATSVRNLEIIEPLHSA-LWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+D S RNLEI + + +G SL L T T G R LR LL+PL +I I
Sbjct: 297 LDHQSRRNLEITQTVRDGTFYG------SLLWALDATATAMGGRALRRWLLEPLLNINGI 350
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKSQ 120
R D ++EL N L L + LRK + +++T +V NAK+
Sbjct: 351 KARQDTIEELTVNTSLRQDLREMLRKI------------YDLERLTGRVGAGSANAKELL 398
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L S++ L LA + +S L I + E E+ +K I +++
Sbjct: 399 ALAESLVRLTD-------LATIANYGKSPYLKAIQKVPSELEQLG--KKVIAHLVES--- 446
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P T+ I+ GI+ LD+ ++ D + + NL RE + NLK+ +N
Sbjct: 447 ----PPQLVTEGGL-IRDGINPQLDVMKQRLEDDRQWLTNLELTERERTGIANLKVGYNK 501
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+YLS+P + P +++ N T EL R SA +
Sbjct: 502 TFGYYLSLPRSKAD-QAPDNYLRKQTLTNEERYITSELKERETRILSAREDLNNLEYEVF 560
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
L + E + +A+ + +D++ A Y RP E + I GR
Sbjct: 561 SQLRAEVAEKAQEIRQIAKAIAAVDVL----AGLAEIAVYQNYCRPEIIEGREIYIVDGR 616
Query: 361 HPILE-SIHNDF-IPNNIFISEA----ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
HP++E S+ N F +PN+ + + +++I+TGPN SGKS YL+QV LI ++AQIG +
Sbjct: 617 HPVVEKSLGNGFFVPNSAHLGDTEANHPDLIILTGPNASGKSCYLRQVGLIQLIAQIGSF 676
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + + + DRIFTR+G VD+L + STFM EM ETA ++ + + +SL+++DE+GR T
Sbjct: 677 VPATEARLAICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATPKSLVLLDEIGRGT 736
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
++ DG +IAW+ E+L + +++ TIFA+H L+EL +I NV V +++ F
Sbjct: 737 ATFDGLSIAWAVAEYLATEIQSRTIFATHYHELNELESILTNVANYQVTVKEMPDKIIFL 796
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
Q+ G YG+ +AGLP +VI A+ + +I K
Sbjct: 797 HQVHPGGAD-KSYGIEAGRLAGLPPSVISRAKQVMGQIEK 835
>gi|401675070|ref|ZP_10807064.1| DNA mismatch repair protein MutS [Enterobacter sp. SST3]
gi|400217527|gb|EJO48419.1| DNA mismatch repair protein MutS [Enterobacter sp. SST3]
Length = 853
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 180/568 (31%), Positives = 282/568 (49%), Gaps = 51/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L G N +L +L +T T G+R+L+ L P++D T+
Sbjct: 269 MDAATRRNLEITQNLAG---GVEN---TLASVLDSTVTPMGSRMLKRWLHMPIRDTATLV 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L + L LR+ + +R+L + T++ D+
Sbjct: 323 CRQQTIAALQDR---YTELQPVLRQV-GDLERILARLALR----TARPRDLAR------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L L D S + + ++ E + +R E+++ ++ A
Sbjct: 368 ------MRHAFQQLPELRAQLSDVDSAPVQKLRETMGE---FTELR----ELLERAIIDA 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE L L LK+ +N
Sbjct: 415 -PPVLVRDGGVIA--PGYNEELDEWRALADGATDYLDKLEIRERERLGLDTLKVGYNAVH 471
Query: 243 GFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ I Q L P +++ N EL + ++ G+ + E
Sbjct: 472 GYYIQISRG--QSHLAPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYE 529
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L D + ++ L L A L LD++VN A T++ YT P FT+ + I G
Sbjct: 530 ELFDMLMPHLADLQLSASALAELDVLVNLAERAETLN------YTCPTFTDKPGIRITEG 583
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + N+ FI N + +S M+I+TGPNM GKSTY++Q LI +LA IG YVPA
Sbjct: 584 RHPVVERVLNEPFIANPLSLSPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQ 643
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ D
Sbjct: 644 NVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTYD 703
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L + +KA T+FA+H L++L V +H + + + F ++
Sbjct: 704 GLSLAWACAESLANKIKAMTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHTVQ 763
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
DG YGL +A +AG+P VI+ AR
Sbjct: 764 DGAAS-KSYGLAVAALAGVPKEVIKRAR 790
>gi|91792565|ref|YP_562216.1| DNA mismatch repair protein MutS [Shewanella denitrificans OS217]
gi|123166308|sp|Q12PY3.1|MUTS_SHEDO RecName: Full=DNA mismatch repair protein MutS
gi|91714567|gb|ABE54493.1| DNA mismatch repair protein MutS [Shewanella denitrificans OS217]
Length = 862
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 170/565 (30%), Positives = 280/565 (49%), Gaps = 43/565 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L + ++ +L +L T T G+R+L+ L QPL+D I
Sbjct: 271 LDAATRRNLELTQNL------SGGREHTLAWVLDNTATPMGSRMLQRWLHQPLRDNNIIA 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
+R + + EL+ LF L Q L+ + +R++ + + D A+
Sbjct: 325 SRHNAVAELI-EANLFDELHQQLKSL-GDIERIMARLALRSARPR------DFAR----- 371
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ AL LP L L ++ LL + + + E + E+ +
Sbjct: 372 ------LRQALSLLPELQHTLGQCKTPLLTKLAQLIGEFPAEHELL--------ENAIVD 417
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R I+ G LD R S+ + L + ++ + LK+ +N
Sbjct: 418 SPPMLIRDGGV--IRSGYHSELDEWRALSEGASDYLTELEAREKQATGISTLKVGYNRVH 475
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + K+P ++ + T EL + S+ G+ + +
Sbjct: 476 GYYIEVSRLQAD-KVPLSYQRRQTLKGTERYITPELKVYEEKVLSSQGKALALEKQLWDQ 534
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L D I ++ L A LD+I FA + YT+P + I+ GRHP
Sbjct: 535 LFDLILPKLNELRDFANAAAELDVIC-CFAERAESL---HYTQPQMVSKTGIQINAGRHP 590
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + + FI N + + +M+IVTGPNM GKSTY++QV LI ++A IGC+VPA +
Sbjct: 591 VVERVSSTAFIANPVNLDAKRHMLIVTGPNMGGKSTYMRQVALISLMAHIGCFVPADSAV 650
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +DRIFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR TS+ DG +
Sbjct: 651 IGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSQSLVLMDEIGRGTSTYDGLS 710
Query: 482 IAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AWS E+L L +KA T+FA+H L++L + P +H + ++ + F +++G
Sbjct: 711 LAWSAAEYLALQIKAMTLFATHYFELTQLPDLIPGANNVHLDAIEHDDTIAFMHAVQEGA 770
Query: 541 RHVPHYGLLLAEVAGLPSTVIETAR 565
YGL +A +AG+PS VI+ A+
Sbjct: 771 AS-KSYGLQVAALAGVPSHVIQAAK 794
>gi|304399204|ref|ZP_07381071.1| DNA mismatch repair protein MutS [Pantoea sp. aB]
gi|304353258|gb|EFM17638.1| DNA mismatch repair protein MutS [Pantoea sp. aB]
Length = 853
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 178/566 (31%), Positives = 287/566 (50%), Gaps = 45/566 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T T G+R+L+ L PL+D IN
Sbjct: 271 MDAATRRNLEITQNLAG---GTDN---TLAAVLDKTVTPMGSRMLKRWLHMPLRDARIIN 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + EL + L L LR+ + +R+L + T++ D+
Sbjct: 325 QRQESIAEL---QNLSDVLQPVLRQV-GDLERILARLALR----TARPRDLAR------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L ++L D ++ L + + E + ++R E++++ V+ +
Sbjct: 370 ------MRHAFQQLPELNQLLADVEAPQLQKLRAQMGE---FTALR----ELLEQAVIES 416
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE+L L LK+ FN
Sbjct: 417 -PPVLIRDGGVIA--PGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGFNGVH 473
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + ++P +++ N EL + ++ G+ + EA
Sbjct: 474 GYYIQV-SRGQSHQVPMHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALSLEKSLYEA 532
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L D + + L L A L LD++ N S Y RP E + I GGRHP
Sbjct: 533 LFDQLLPHLEALQLSAAALAELDVLSNLAERAWSLN----YCRPVLQEKAGIKISGGRHP 588
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + + FI N + ++ M+I+TGPNM GKSTY++Q LI ++A IG +VPA +
Sbjct: 589 VVEQVLKEPFIANPLSLAPQRRMLIITGPNMGGKSTYMRQAALIALMAWIGSFVPADETL 648
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ DG +
Sbjct: 649 IGPLDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYDGLS 708
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+C E+L + +KA T+FA+H L+ L V +H V + + F +++G
Sbjct: 709 LAWACAENLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAVEHGDTIAFMHSVQEGA 768
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARS 566
YGL +A +AG+P VI+ AR+
Sbjct: 769 AS-KSYGLAVAALAGVPKEVIKRARN 793
>gi|313108979|ref|ZP_07794954.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 39016]
gi|310881456|gb|EFQ40050.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 39016]
Length = 875
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 286 LDGASRRNLELDINL------SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 339
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 340 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 382
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 383 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 434
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 435 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 490
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 491 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 549
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 550 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 605
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 606 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 665
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 666 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 725
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 726 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 785
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+P+ VI+ AR + +KR+E L ++
Sbjct: 786 SQ-SYGLAVAQLAGVPTPVIQRAR--------EHLKRLETTSLPHE 822
>gi|392953193|ref|ZP_10318747.1| DNA mismatch repair protein MutS [Hydrocarboniphaga effusa AP103]
gi|391858708|gb|EIT69237.1| DNA mismatch repair protein MutS [Hydrocarboniphaga effusa AP103]
Length = 863
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 175/585 (29%), Positives = 283/585 (48%), Gaps = 49/585 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI L + + SL H+ + T G+R L LL+PL+D +
Sbjct: 268 LDPATRRNLEIDRRL------SGEFELSLLHVFDSNVTAMGSRELARWLLRPLRDRNELT 321
Query: 63 TRLDCLDELMSNEQ---LFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D + L+ +E+ L L LR + +R+L + +++ D+
Sbjct: 322 GRFDAIANLLDHERDNRLLSALRDRLRNV-SDLERILARCALR----SARPRDLAG---- 372
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ L LP L + + D ++ L + ++ +E A+
Sbjct: 373 ---------LRDTLALLPALVEEIADLEAPRLVALRAALAPHEALAAELAL--------A 415
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+H + P + F + G D LD R+ + + + + R + LK+ +N
Sbjct: 416 IHEQPPLTIKDGGIF--RSGYDADLDTLRQLSENADGFLMQMEQRERAATGIETLKVGYN 473
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GFY+ I K K+P+ + + N T EL + SA R ++
Sbjct: 474 RVHGFYIEI-GKTHAAKIPAHYSRRQTLTNYERYITEELKRFEDQVLSARDRALAREKLL 532
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+AL+D + E + L + A L LD++ +I+ RP L I G
Sbjct: 533 YDALLDKLNEQLRPLQVTARALAELDVLGTLAERSITLN----LKRPELVTEDRLEIHAG 588
Query: 360 RHPILES-IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E I + F+ N + + + +++TGPNM GKSTY++Q LIV+LA G +VPA
Sbjct: 589 RHPVVERMIGSAFVANGLCLDASTRQLVITGPNMGGKSTYMRQTALIVLLAHAGSFVPAD 648
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I VDRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+ D
Sbjct: 649 SACIGPVDRIFTRIGAADDLASGQSTFMVEMSETANILHNATRCSLVLMDEVGRGTSTYD 708
Query: 479 GFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVV----IRNNRLDFK 533
G ++A +C E+L ++ +YT+FA+H L+ELA P + +H V ++L F
Sbjct: 709 GLSLARACSEYLATAVGSYTLFATHYFELTELAGALPGIANVHLDAVEFGSGPTSKLVFL 768
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKR 578
Q+K GP + YGL +A +AGLP V+ AR+ S + ++ R
Sbjct: 769 HQVKAGPANR-SYGLQVAALAGLPPAVVGKARAYLSELEQQPKSR 812
>gi|427399219|ref|ZP_18890457.1| DNA mismatch repair protein mutS [Massilia timonae CCUG 45783]
gi|425721710|gb|EKU84618.1| DNA mismatch repair protein mutS [Massilia timonae CCUG 45783]
Length = 890
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 168/576 (29%), Positives = 285/576 (49%), Gaps = 46/576 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ E + + +LF +L +T G+RLLR L +D
Sbjct: 287 IGLDAATRRNLELTETIRG------QESPTLFSLLDGCRTAMGSRLLRHWLHHARRDQSV 340
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+R + L+ E + LS L + P + +R+ +T++ D
Sbjct: 341 ARSRHQSIAALIQAEAID-ALSSTLAQVP-DIERITTRVAL----LTARPRD-------- 386
Query: 121 TLISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
+ L+ L ALP++ A+ + LL I+ + + + R V++
Sbjct: 387 -----LAALRDGLKALPVVREQVARCFVPGDTCLLREIHDDLATPGECVDLLTRA--VME 439
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
E + R FA G D LD R + + + +L + R + NL++
Sbjct: 440 EPAA------MVRDGGVFA--RGFDAELDELRALSENAGQFLVDLETRERARTGIANLRV 491
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N GFY+ + + K+P + + N T EL + + SA R
Sbjct: 492 EYNKVHGFYIEVTNGQAD-KVPDDYRRRQTLKNCERYITPELKAFEDKALSAQDRALARE 550
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+I + L+ + + VL +A L +D++V +H + + P ++ L I
Sbjct: 551 KILYDQLLADLAPHIGVLQTIARALAQVDVLVALSSHALRHN----WCAPVLSDAPCLTI 606
Query: 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E+ FI N+ +S ++++TGPNM GKST+++QV LI +LA +G YVP
Sbjct: 607 VEGRHPVVENQIERFIANDCKLSNDRRLLLITGPNMGGKSTFMRQVALITLLAYVGSYVP 666
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +TI +DRIFTR+G D+L + STFM EM E+A ++ +E SL++MDE+GR TS+
Sbjct: 667 ATSATIGPIDRIFTRIGASDDLANGRSTFMVEMTESAAILNGATEHSLVLMDEVGRGTST 726
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG A+AW+ HL+ + +++T+FA+H L++L YP+ +H V + + F
Sbjct: 727 FDGLALAWAIARHLIDTSRSFTLFATHYFELTQLPETYPSAANVHLSAVEHKDSIVFLHA 786
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
++DGP YGL +A++AG+P VI+ AR +R+
Sbjct: 787 VQDGPAS-QSYGLQVAQLAGVPQPVIKAARKHLARL 821
>gi|15598816|ref|NP_252310.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa PAO1]
gi|254236535|ref|ZP_04929858.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa C3719]
gi|392982656|ref|YP_006481243.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa DK2]
gi|418586145|ref|ZP_13150191.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa MPAO1/P1]
gi|418589427|ref|ZP_13153349.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa MPAO1/P2]
gi|419754788|ref|ZP_14281146.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa
PADK2_CF510]
gi|420138182|ref|ZP_14646122.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa CIG1]
gi|421166148|ref|ZP_15624416.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa ATCC
700888]
gi|421518163|ref|ZP_15964837.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa PAO579]
gi|424939566|ref|ZP_18355329.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa NCMG1179]
gi|37999787|sp|Q9HY08.1|MUTS_PSEAE RecName: Full=DNA mismatch repair protein MutS
gi|9949778|gb|AAG07008.1|AE004782_6 DNA mismatch repair protein MutS [Pseudomonas aeruginosa PAO1]
gi|126168466|gb|EAZ53977.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa C3719]
gi|318054274|gb|ADV35581.1| DNA mismatch repair protein [Pseudomonas aeruginosa]
gi|318054278|gb|ADV35583.1| DNA mismatch repair protein [Pseudomonas aeruginosa]
gi|318054280|gb|ADV35584.1| DNA mismatch repair protein [Pseudomonas aeruginosa]
gi|318054282|gb|ADV35585.1| DNA mismatch repair protein [Pseudomonas aeruginosa]
gi|318054284|gb|ADV35586.1| DNA mismatch repair protein [Pseudomonas aeruginosa]
gi|346056012|dbj|GAA15895.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa NCMG1179]
gi|375043819|gb|EHS36435.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa MPAO1/P1]
gi|375051661|gb|EHS44127.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa MPAO1/P2]
gi|384398606|gb|EIE45011.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa
PADK2_CF510]
gi|392318161|gb|AFM63541.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa DK2]
gi|403249035|gb|EJY62551.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa CIG1]
gi|404347645|gb|EJZ73994.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa PAO579]
gi|404539125|gb|EKA48630.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa ATCC
700888]
gi|453047373|gb|EME95087.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa
PA21_ST175]
Length = 855
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 266 LDGASRRNLELDINL------SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 363 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 415 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 471 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 530 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+P+ VI+ AR + +KR+E L ++
Sbjct: 766 SQ-SYGLAVAQLAGVPAPVIQRAR--------EHLKRLETTSLPHE 802
>gi|398884493|ref|ZP_10639426.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM60]
gi|398194302|gb|EJM81378.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM60]
Length = 859
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 171/573 (29%), Positives = 283/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLNVLL 323
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + E+L L + + +R+L + NA+
Sbjct: 324 ARQTSITCLLDGYRFEKLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + ++ + + ++ + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPELQVAMAELEAPHIIQLAKTTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDSELDDLQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + + SA R ++
Sbjct: 472 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + + I G
Sbjct: 531 YEALLEDLISQLPPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVDEPCMRISQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAQLRAYTLFATHYFELTVLPEAQPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR R+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVIVRAREHLGRL 798
>gi|386067655|ref|YP_005982959.1| DNA mismatch repair protein [Pseudomonas aeruginosa NCGM2.S1]
gi|348036214|dbj|BAK91574.1| DNA mismatch repair protein [Pseudomonas aeruginosa NCGM2.S1]
Length = 846
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 257 LDGASRRNLELDINL------SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 311 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 353
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 354 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 405
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 406 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 461
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 462 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 520
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 521 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 576
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 577 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 636
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 637 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 696
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 697 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 756
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+P+ VI+ AR + +KR+E L ++
Sbjct: 757 SQ-SYGLAVAQLAGVPTPVIQRAR--------EHLKRLETTSLPHE 793
>gi|421465263|ref|ZP_15913951.1| DNA mismatch repair protein MutS [Acinetobacter radioresistens
WC-A-157]
gi|400204525|gb|EJO35509.1| DNA mismatch repair protein MutS [Acinetobacter radioresistens
WC-A-157]
Length = 883
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 170/582 (29%), Positives = 302/582 (51%), Gaps = 45/582 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEII+PL GTS LFH++ +T G+RLL L+QP++D +
Sbjct: 277 LDPVTRRNLEIIDPLFE--HGTS-----LFHLINECQTAMGSRLLSRTLMQPIRDTVILE 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +++L+ + + K + +RVL T++ D+ +++
Sbjct: 330 ARLDAIEQLVKG--YHEAPVRLVLKEISDIERVLSRIALG----TARPRDLVQLRQA--- 380
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
S I L+ AL V+ +S +L +Y+ + + + + +R+ I E+
Sbjct: 381 CSQIPFLRHALQP------VIDSKKSKMLHQLYQELGD---FKVLSERLSSAIVENP--- 428
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G D LD R+ + + +L + RE+ + LK+ +N
Sbjct: 429 --PVLLRDGSVIA--EGFDHELDELRKIRDHAGQFLIDLEIQEREQTGISTLKIGYNRVS 484
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + + P +I+ N T EL S + S+ R ++ E
Sbjct: 485 GYYIELTRAQAE-QAPEHYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKLLFEL 543
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ +R+D++ L +++ + +D++ N FA+ K + RP F+ + I GRHP
Sbjct: 544 LLEELRQDIASLQVMSSAIAQIDLLAN-FAYQARLK---SWNRPEFSPEVGIKIIAGRHP 599
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++ES+ + PN+ + M I+TGPNM GKST+++Q LI +LA G +VPA +
Sbjct: 600 VVESLSKTPYTPNDTSLDFNHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPAQSAR 659
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +DRIFTR+G+ D+L S STFM EM ET+ ++ + + +SL++MDE+GR TS+ DG +
Sbjct: 660 LGPIDRIFTRIGSADDLSSGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTYDGLS 719
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQLKD 538
+AW+C L +K +FA+H L+EL I +++V + N L +++
Sbjct: 720 LAWACVLDLTKRIKCLCLFATHYFELTELGQ---EAGIDNYHVTAKEMNGNLILLHKVQP 776
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
GP H GL +A++AG+P++VI+ A+ + K++ + ++
Sbjct: 777 GPASQSH-GLQVAKLAGIPASVIKEAQKRLKILEKQQQQHLQ 817
>gi|338997258|ref|ZP_08635959.1| DNA mismatch repair protein MutS [Halomonas sp. TD01]
gi|338765855|gb|EGP20786.1| DNA mismatch repair protein MutS [Halomonas sp. TD01]
Length = 855
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 173/582 (29%), Positives = 280/582 (48%), Gaps = 47/582 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S RNLEI L G+S+ +L +L T T G+RLL+ L +PL+ + +
Sbjct: 267 IDAASRRNLEI----DINLGGSSDN--TLASVLDTCTTAMGSRLLKRWLNRPLRQRDVVE 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCH---FCFKPKKVTSKVLDVDNAKKS 119
R + L+S E + L L + +R+L + +P+ +
Sbjct: 321 DRHAGV-ALLSIEAAYLPLRDTLSDV-GDVERILARVALYSARPRDLAR----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ AL LP L ++L + + + + Y I + + E+
Sbjct: 368 ---------LRDALVTLPALEQLLSEIDNGSALDGLKPHIR--PYPEIADTLTRALVENP 416
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R A G D LD R + + + L + RE L NLK+ +N
Sbjct: 417 -----PVVIRDGGVIA--NGFDTELDEHRGMAENAGDYLVQLELRERERTGLANLKVGYN 469
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P Q + P+ +I+ N EL + SA R +
Sbjct: 470 RVHGYFIELPRSQAQ-QAPADYIRRQTLKNAERFIIPELKEFEDKALSAKSRALTREKWL 528
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L+ + + L + L LD++ +FA + RP ++ L I G
Sbjct: 529 YERLMGELNAALHALQNTSRALAELDVLC-AFAERAEAL---NWVRPQLSDATGLRISAG 584
Query: 360 RHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + + F+PN++ ++ +M+I+TGPNM GKSTY++Q LI +LA G +VPA
Sbjct: 585 RHPVVEHVSDTPFVPNDVTLTPDQHMLIITGPNMGGKSTYMRQTALIALLAHSGSFVPAD 644
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I VDRIFTR+G+ D+L STFM EM ETA ++ N +E SL++MDE+GR TS+ D
Sbjct: 645 SAEIGPVDRIFTRIGSSDDLAGGRSTFMVEMTETANILHNATEHSLVLMDEIGRGTSTFD 704
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E+L KA T+FA+H ++ L V +H + + F +++
Sbjct: 705 GLSLAWASAEYLAEAKALTLFATHYFEMTALPEQAEGVANIHLTATEHGDSIVFMHRIES 764
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
GP YGL +A++AG+PS VI AR + +++V ++
Sbjct: 765 GPAS-QSYGLQVAQLAGVPSHVIRRAREKLMALEQRDVDELQ 805
>gi|296387876|ref|ZP_06877351.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa PAb1]
gi|416874849|ref|ZP_11918398.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 152504]
gi|334842591|gb|EGM21195.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa 152504]
Length = 855
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 266 LDGASRRNLELDINL------SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 363 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 415 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 471 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 530 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+P+ VI+ AR + +KR+E L ++
Sbjct: 766 SQ-SYGLAVAQLAGVPTPVIQRAR--------EHLKRLETTSLPHE 802
>gi|116051617|ref|YP_789544.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa
UCBPP-PA14]
gi|355640036|ref|ZP_09051526.1| DNA mismatch repair protein mutS [Pseudomonas sp. 2_1_26]
gi|421152571|ref|ZP_15612151.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa ATCC
14886]
gi|421173142|ref|ZP_15630896.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa CI27]
gi|122260760|sp|Q02R92.1|MUTS_PSEAB RecName: Full=DNA mismatch repair protein MutS
gi|115586838|gb|ABJ12853.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa
UCBPP-PA14]
gi|354831556|gb|EHF15568.1| DNA mismatch repair protein mutS [Pseudomonas sp. 2_1_26]
gi|404525331|gb|EKA35607.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa ATCC
14886]
gi|404536443|gb|EKA46083.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa CI27]
Length = 855
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 266 LDGASRRNLELDINL------SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 363 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 415 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 471 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 530 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+P+ VI+ AR + +KR+E L ++
Sbjct: 766 SQ-SYGLAVAQLAGVPTPVIQRAR--------EHLKRLETTSLPHE 802
>gi|423205105|ref|ZP_17191661.1| DNA mismatch repair protein mutS [Aeromonas veronii AMC34]
gi|404624926|gb|EKB21744.1| DNA mismatch repair protein mutS [Aeromonas veronii AMC34]
Length = 839
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 175/570 (30%), Positives = 283/570 (49%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L G N +L +L T T G+RLL+ + QP++D +
Sbjct: 257 MDAATRRNLELTQNLAG---GHDN---TLSAVLDCTATPMGSRLLKRWIHQPIRDRVILK 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R + EL+ + L+ L LR+ + +RVL + P+ +T
Sbjct: 311 GRQSTIKELI-EQNLYDELGNLLRQV-GDMERVLARLALRSARPRDLTR----------- 357
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ A LP L ++L D N + +V + + AS + ++++ V
Sbjct: 358 ---------LRQAFAQLPELQRLLAD-------NEHEAVQQLAERASTFPELLDLLERAV 401
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ VP V + I+ G + LD R + ++ + + + + LK+ +N
Sbjct: 402 ME--VPPVL-IRDGGVIRDGFNQELDELRDLANGATASLARIEEREKLLTGINTLKVGYN 458
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GFY+ + + +P+ +I+ NN EL + +A + +
Sbjct: 459 KVHGFYIEVSRANSH-LVPAHYIRRQTLKNNERYIIDELKKYEDKVLTAQSQALALEKRL 517
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAID 357
E L+DA+ + L A L LD++ N A T+ Y P + + I+
Sbjct: 518 YEELLDALLPHLGDLQDSAAALAELDVLANLAERAETLD------YRCPTLIDEDQIIIE 571
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D FI N I + M+I+TGPNM GKSTY++Q LIV+LA IG +VP
Sbjct: 572 AGRHPVVEQVMTDPFIANPIRLERERRMLIITGPNMGGKSTYMRQTALIVLLAHIGAFVP 631
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + RSL++MDE+GR TS+
Sbjct: 632 ADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLMDEIGRGTST 691
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C E L S + AYT+FA+H L+ L + + +H V + + F
Sbjct: 692 YDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMSGLANVHLDAVEHGDTIAFMHA 751
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++G YGL +A +AG+P +VI+ AR
Sbjct: 752 VQEGAASR-SYGLQVAALAGVPKSVIQQAR 780
>gi|421158588|ref|ZP_15617835.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa ATCC
25324]
gi|404549469|gb|EKA58328.1| DNA mismatch repair protein MutS [Pseudomonas aeruginosa ATCC
25324]
Length = 855
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 266 LDGASRRNLELDINL------SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 363 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 415 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 471 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 530 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+P+ VI+ AR + +KR+E L ++
Sbjct: 766 SQ-SYGLAVAQLAGVPAPVIQRAR--------EHLKRLETTSLPHE 802
>gi|331006215|ref|ZP_08329537.1| DNA mismatch repair protein MutS [gamma proteobacterium IMCC1989]
gi|330419972|gb|EGG94316.1| DNA mismatch repair protein MutS [gamma proteobacterium IMCC1989]
Length = 901
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 169/580 (29%), Positives = 291/580 (50%), Gaps = 61/580 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA++ RNLE+ L + + +LF +L T T G+R L + +PL + +
Sbjct: 285 MDASTRRNLELCTNL------SGGEDNTLFSILNTCATTMGSRQLARWINRPLTQQDILV 338
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R + + L+ N + F + L+ + +R+L + P+ ++ L + +
Sbjct: 339 QRQEAIGTLLGNYR-FEPMHDTLKAI-GDLERILARVALRSARPRDLSRLSLSLAVYPQL 396
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSF--LLANIYRSVCENEKYASIRKRIGEVIDE 177
Q L+++++L KT PLL ++ + +F +++ + +++ EN + R G VI E
Sbjct: 397 QELLAALVLDKTC----PLLTQLSQSISTFPEIVSLLEKAIIEN---PPVVIRDGGVIAE 449
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
G D LD R + + +L + +E + LK+
Sbjct: 450 ---------------------GYDSELDELRNISSHAGQFLIDLETQEKERTGIATLKVG 488
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N G+Y+ I K P+ +I+ N T EL + SA R +
Sbjct: 489 YNRVHGYYIEISRAQ-SDKAPAEYIRRQTLKNAERFITPELKEFEDKALSAKSRALSREK 547
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR--YTRPHFT------ 349
EA+++ + E + L + A + LD++ T + DR + P T
Sbjct: 548 ALYEAIIEQLNEQLLALQISAAAVAELDVL------TTLAERADRLQFCCPTLTVTTAAA 601
Query: 350 ENGPLAIDGGRHPILESI---HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406
E + I+ GRHP++E + F+PN+I ++ M+I+TGPNM GKSTY++Q LI
Sbjct: 602 ETNSITIEQGRHPVVEEVLAGTAPFVPNDISLNHDRRMLIITGPNMGGKSTYMRQTALIT 661
Query: 407 ILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466
+LA IG YVPA +TI +VDRIFTR+G+ D+L STFM EM ETA ++QN ++ SL++
Sbjct: 662 LLAHIGSYVPAKSATISIVDRIFTRIGSSDDLAGGRSTFMVEMTETANILQNATKNSLVL 721
Query: 467 MDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
MDE+GR TS+ DG ++AW+C HL +++A +FA+H ++ L V +H
Sbjct: 722 MDEIGRGTSTFDGLSLAWACAHHLADNIQALCLFATHYFEITSLPESVTGVANVHLSATE 781
Query: 526 RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
N+ + F ++++G YGL +A++AG+P +V+ A+
Sbjct: 782 HNDNIVFLHRIEEGAAS-QSYGLQVAKLAGIPQSVVNEAQ 820
>gi|224537020|ref|ZP_03677559.1| hypothetical protein BACCELL_01896 [Bacteroides cellulosilyticus
DSM 14838]
gi|423223186|ref|ZP_17209655.1| DNA mismatch repair protein mutS [Bacteroides cellulosilyticus
CL02T12C19]
gi|224521387|gb|EEF90492.1| hypothetical protein BACCELL_01896 [Bacteroides cellulosilyticus
DSM 14838]
gi|392639287|gb|EIY33112.1| DNA mismatch repair protein mutS [Bacteroides cellulosilyticus
CL02T12C19]
Length = 872
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 182/582 (31%), Positives = 302/582 (51%), Gaps = 60/582 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +VR+LE+I ++ G S SL +++ T + G RLL+ L+ PLKD+ IN
Sbjct: 268 LDKFTVRSLELIGSMND---GGS----SLLNVIDKTISPMGARLLKRWLVFPLKDVLPIN 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL+ + + FF F KE H +++ SKV +
Sbjct: 321 ERLNVV-------EYFFRQPDF-----KELIEEQLHLIGDLERIISKV------AVGRVS 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDEDVL 180
++ LK AL A+ + + +A + L I ++C+ SIR RI + I+ D
Sbjct: 363 PREVVALKVALQAIEPIKEACLEADNASLNRIGEQLNICK-----SIRDRIEKEINNDP- 416
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + +K G++ LD R+ + + + + E ++P+LK+ +NN
Sbjct: 417 ----PLL--INKGGVMKSGVNAELDELRQIAYSGKDYLLQIQQRESELTEIPSLKIGYNN 470
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI-RTE 297
G+Y+ + HKD K+P +I+ N T EL + A + I T+
Sbjct: 471 VFGYYIEVRNTHKD---KVPQEWIRKQTLANAERYITQELKEYEEKILGAEDKILILETQ 527
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
+ +E LV A+ E + + + A + LD ++ SFA+ + Y RP +N L I
Sbjct: 528 LYME-LVQALSEFIPAIQVNANQIARLDCLL-SFANVARE---NNYIRPVIEDNDVLDIR 582
Query: 358 GGRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
GRHP++E I +I N++ + S + ++I+TGPNM+GKS L+Q LI +LAQIG
Sbjct: 583 QGRHPVIEKQLPIGEKYIANDVVLDSSSQQIIIITGPNMAGKSALLRQTALITLLAQIGS 642
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +VD+IFTR+G DN+ STFM EM E A ++ N+S RSL++ DELGR
Sbjct: 643 FVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSSRSLVLFDELGRG 702
Query: 474 TSSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
TS+ DG +IAW+ EH+ KA T+FA+H L+E+ + +K + V +N++
Sbjct: 703 TSTYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKV 762
Query: 531 DFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
F +L + G H +G+ +A++AG+P ++++ A I ++
Sbjct: 763 IFLRKLERGGSEH--SFGIHVAKMAGMPKSIVKRANDILKQL 802
>gi|393775423|ref|ZP_10363736.1| DNA mismatch repair protein MutS [Ralstonia sp. PBA]
gi|392717473|gb|EIZ05034.1| DNA mismatch repair protein MutS [Ralstonia sp. PBA]
Length = 856
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 163/572 (28%), Positives = 280/572 (48%), Gaps = 55/572 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D + RNLE+ E L GT + +LF +L T T G+RLLR L PL+D T
Sbjct: 258 IGLDTATRRNLELTETLR----GTESP--TLFSLLDTCATSMGSRLLRHWLHHPLRDRGT 311
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAK 117
R + L++ + + + LR+ + +R+ +P+ ++S
Sbjct: 312 PQMRQHAIATLLTQD--WQSIQAVLRQT-ADIERITARLALLSARPRDLSS--------- 359
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSV-CENEKYASIRKRIGEVID 176
L+ +L +PLL + + +S LLA + ++ C + + I E
Sbjct: 360 -----------LRDSLKRMPLLQQAVAPGESSLLAVLRDALPCPPACLGLLEQAIAEEP- 407
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
A + I G D LD R+ + + + +L + R + NL++
Sbjct: 408 ----------AAMVRDGGVIATGYDAELDELRQLSQNAGQFLIDLETRERARTGIANLRV 457
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
+N GFY+ + + K+P + + N T EL + + SA R
Sbjct: 458 EYNRVHGFYIEVTNGQAD-KVPDDYRRRQTLKNAERYITPELKAFEDKALSAQDRALARE 516
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMI--VNSFAHTISTKPVDRYTRPHFTENGPL 354
++ + L+ + ++ L +A + LD++ + A T+ + +P+ E +
Sbjct: 517 KLLFDELLQKLLAYIADLKRIAAAVAQLDVLAALAERAQTLG------WNQPNLVETSTV 570
Query: 355 AIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GRHP++E+ FI N+ +S+ ++++TGPNM GKST+++Q LIV+LA +G +
Sbjct: 571 DIVQGRHPVVENQVEKFIANDCQLSDVRKLLLITGPNMGGKSTFMRQTALIVLLAYVGAF 630
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA +TI +DRIFTR+G D+L STFM EM E A ++ N + SL++MDE+GR T
Sbjct: 631 VPAAHATIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAASILHNATPNSLVLMDEIGRGT 690
Query: 475 SSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG A+AW+ HLL +++ +FA+H L++L +P +H + + F
Sbjct: 691 STFDGLALAWAIARHLLGHNRSHCLFATHYFELTQLPQSFPQAVNVHLSAIEHGEGIVFL 750
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++GP YGL +A++AG+P VI AR
Sbjct: 751 HAVQEGPASQ-SYGLQVAQLAGVPQPVIRAAR 781
>gi|343084860|ref|YP_004774155.1| DNA mismatch repair protein mutS [Cyclobacterium marinum DSM 745]
gi|342353394|gb|AEL25924.1| DNA mismatch repair protein mutS [Cyclobacterium marinum DSM 745]
Length = 866
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 182/583 (31%), Positives = 298/583 (51%), Gaps = 58/583 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++RNLE++ P G L +L T+T G+R+++ L+ PLK+ I
Sbjct: 268 LDKFTIRNLELVYPQQEG--GVP-----LIQILDRTQTPMGSRMMKKWLVLPLKEKALIV 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R ++ N +L L L K + +R++ ++ + ++++ KK+
Sbjct: 321 ERQKSVNFFYENSELREELFSHL-KHVGDLERLISKVAVG--RINPR--EMNHLKKALNY 375
Query: 123 ISSII-LLKTALD-ALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I LLKT + AL L+ L ++ S+LL I + + E+
Sbjct: 376 TLPIKELLKTQQNGALKKLSDQL-NSCSYLLEKIDKELLED------------------- 415
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + T Q IK G+D LD R+ + + + + + + +LK+ FN
Sbjct: 416 ---APML--THQGGIIKNGVDSDLDEYRKLANSGKDYLVQIQQREVQRTGITSLKVAFNK 470
Query: 241 RQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+YL + HKD K+P +I+ N T EL + A +
Sbjct: 471 VFGYYLEVSNTHKD---KVPPEWIRKQTLVNAERYITEELKEYEEKILHAEERLIALEQK 527
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
+ LV + V + A VL LD ++ SFA S ++Y P ++ + I
Sbjct: 528 YFQLLVQDAGDYVEQIQQNARVLATLDCLL-SFAEVASE---NKYCAPKIADSDAIEIKD 583
Query: 359 GRHPILE---SIHNDFIPNNIFISEAANMVIV-TGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E +I D++PN+I++ ++ VI+ TGPNM+GKS L+Q LIV++AQ+G +
Sbjct: 584 GRHPVIEKQLAIGEDYVPNDIYLDNSSQQVIIITGPNMAGKSALLRQTALIVLMAQMGSF 643
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA F+ + +VD++FTR+G DNL STFM EM ETA ++ N+S+RSL++MDE+GR T
Sbjct: 644 VPASFARVGIVDKVFTRVGASDNLSKGESTFMVEMTETASILNNLSDRSLVLMDEIGRGT 703
Query: 475 SSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAWS E+L + KA T+FA+H L++LA +P VK + V N++
Sbjct: 704 STYDGISIAWSIVEYLHNHPKCKAKTLFATHYHELNQLANDFPKVKNFNVAVKELGNKVV 763
Query: 532 FKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
F +L K G H +G+ +A++AG+P+ V+ A I + K
Sbjct: 764 FMRKLQKGGSEH--SFGIHVAQMAGMPNPVVLRAAEIMKFLEK 804
>gi|292669799|ref|ZP_06603225.1| DNA mismatch repair protein MutS [Selenomonas noxia ATCC 43541]
gi|292648596|gb|EFF66568.1| DNA mismatch repair protein MutS [Selenomonas noxia ATCC 43541]
Length = 866
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 180/587 (30%), Positives = 297/587 (50%), Gaps = 61/587 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++RNLEI L +KK +LF +L T+T GTRLL++ L PL
Sbjct: 262 MQLDTYTLRNLEITRSLRDG-----SKKNTLFDVLDFTRTPMGTRLLKSWLEHPLLVPHR 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RLD + EL L GL + LR + +R+L + + + D
Sbjct: 317 IDARLDAVAELAEKPSLRSGLREALRSI-YDFERLLTRI----ETLAANARD-------- 363
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ L+ +L ALP++ L A+S LL + ++ ++ + +R ++DE +
Sbjct: 364 -----LVALRVSLAALPMVRTALGTAESRLLTHFAGAILTFDELRDVLERA--IVDEPGI 416
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
R + I+ G D LD R D+ + + + RE + LK+ +N
Sbjct: 417 SVR--------EGGIIREGYDAALDDLHRFSHDSKALLQEMEERERERTGIKTLKIGYNK 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYIR 295
G+Y+ + H + ++P+ +I+ N T EL + L + K A E ++
Sbjct: 469 VFGYYIEVRHSG-RDQVPADYIRKQTLANTERFITEELKAFEAKILGAQEKITALEYHLF 527
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF--TENGP 353
TE L + +RE + + +A V+ +D + S A + RY RP +G
Sbjct: 528 TE-----LRERVREQLVPIQNVARVIARVDAL-QSLAEAAAAY---RYVRPKICTAADGE 578
Query: 354 LAIDGGRHPILESI--HNDFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I GRHP++E I F+PN+ +S A +++TGPNM+GKSTY++QV L+ ++AQ
Sbjct: 579 IIIRDGRHPLVERILQREIFVPNDTHLSHGGAETMLITGPNMAGKSTYMRQVALLTLMAQ 638
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G +VPA + I VDRIFTR+G D+L S STFM EM E A +++ + SL+++DE+
Sbjct: 639 VGSFVPARSAQIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLVILDEI 698
Query: 471 GRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIR--N 527
GR TS+ DG +IA + E + + A T+FA+H L+E+A +I ++ + +R
Sbjct: 699 GRGTSTFDGMSIARAVVEFIDTRIHAKTLFATHYHELTEMA----GERIRNYCIAVREKG 754
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
R+ F ++ G YG+ +A +AGLP V E A I + +K
Sbjct: 755 KRVAFLRRIIPGAAD-KSYGIHVARLAGLPPRVTERAEEILHALEQK 800
>gi|262401760|ref|ZP_06078326.1| DNA mismatch repair protein MutS [Vibrio sp. RC586]
gi|262352177|gb|EEZ01307.1| DNA mismatch repair protein MutS [Vibrio sp. RC586]
Length = 861
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 175/571 (30%), Positives = 279/571 (48%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ H+ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 273 LDAATRRNLELT---HNLAGGTDN---TLADVLDHCATPMGSRMLKRWVHQPMRDNATLN 326
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL E +G + K + +R+L + +
Sbjct: 327 QRLDAITEL--KETTLYGELHPVLKQIGDIERILARLALRSARP---------------- 368
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A+ LP L V+ + + L + ++ + +R I E+
Sbjct: 369 -RDLARLRHAMQQLPELHSVMSELEQPHLTELRTHAQPMDELCDLLER---AIKENP--- 421
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 422 --PVVIRDGGVIA--DGYSTELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVH 477
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 478 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALAVEKQL--- 533
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L LA + LD++ N S + Y RP + + I
Sbjct: 534 --WEELFDLLLPHLEQLQQLAASIAQLDVLQNLAERAESLE----YCRPTLVKEAGIRIL 587
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 588 GGRHPVVEQVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 647
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 648 AESAQIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSHSLVLMDEIGRGTST 707
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + A T+FA+H L+EL P++ +H V + + F
Sbjct: 708 YDGLSLAWASAEWLAREIGALTLFATHYFELTELPNSLPHLANVHLDAVEHGDSIAFMHA 767
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 768 VQEGAAS-KSYGLAVAGLAGVPKPVIKNARA 797
>gi|45645391|gb|AAS73295.1| DNA mismatch repair protein [Haemophilus influenzae]
Length = 861
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 177/625 (28%), Positives = 303/625 (48%), Gaps = 58/625 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 267 IQLDAATRRNLELTQNLAG---GTEN---TLSSVLDKCVTPMGSRLLKRWIHQPVRDVEK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 321 LKQRQQSIAEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVID 176
L+TAL+ +P L +++ L ++ + + +E+Y +++ + E
Sbjct: 370 -----------LRTALEQIPALRAIVQQKTPPFLTALFSQIADFSEQYDLLQRALIET-- 416
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
P + R A G + LD R ++ + NL + RE + LK+
Sbjct: 417 -------PPLLIRDGGVIA--EGYNAELDEWRMLSDGATQYLENLEKRERESTGIDTLKI 467
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
FN G+Y+ I K P +++ N EL + + G
Sbjct: 468 GFNAVHGYYIQISQGQAH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALE 526
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ + L D + + L L + L LD++VN A T Y P F + + I
Sbjct: 527 KQLYDELFDLLLPHLGTLQLASLALSELDVLVN-LAERADTL---NYVMPTFCDEVSVKI 582
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
+ GRHP++E + D FI N + ++ +++++TGPNM GKSTY++ LI +LA IG +V
Sbjct: 583 ENGRHPVVEQVLKDPFIANPVELNHNRHLLVITGPNMGGKSTYMRPTALITLLAYIGSFV 642
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I +DRIFTR+G D+L S STFM EM E A ++ +E+SL+++DE+GR TS
Sbjct: 643 PADSAGIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEQSLVLIDEIGRGTS 702
Query: 476 SSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG ++AW+C E L +++ T+FA+H L+ L + +H + NN + F
Sbjct: 703 TYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIHLDALEHNNSIAFMH 762
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYH 594
++DG YGL +A +AG+P +VI+ A+ +++ K E +QIQ L
Sbjct: 763 AVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSGHSAE------QQIQALRE 815
Query: 595 AAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A++ L
Sbjct: 816 ANHNQGEL-FFEQETDALREAIEKL 839
>gi|421857168|ref|ZP_16289522.1| DNA mismatch repair protein MutS [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|403187390|dbj|GAB75723.1| DNA mismatch repair protein MutS [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 883
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 169/582 (29%), Positives = 302/582 (51%), Gaps = 45/582 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEII+PL GTS LFH++ +T G+RLL L+QP++D +
Sbjct: 277 LDPVTRRNLEIIDPLFE--HGTS-----LFHLINECQTAMGSRLLSRTLMQPIRDTVILE 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +++L+ + + K + +RVL T++ D+ +++
Sbjct: 330 ARLDAIEQLVKG--YHEAPVRLVLKEISDIERVLSRIALG----TARPRDLVQLRQA--- 380
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
S I L+ AL V+ +S +L +Y+ + + + + +R+ I E+
Sbjct: 381 CSQIPFLRHALQP------VIDSKKSKMLHQLYQELGD---FKVLSERLSSAIVENP--- 428
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G D LD R+ + + +L + RE+ + LK+ +N
Sbjct: 429 --PVLLRDGNVIA--EGFDHELDELRKIRDHAGQFLIDLEIQEREQTGISTLKIGYNRVS 484
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + + P +I+ N T EL S + S+ R ++ E
Sbjct: 485 GYYIELTRAQAE-QAPEHYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKLLFEL 543
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
+++ +R+D++ L +++ + +D++ N FA+ K + RP F+ + I GRHP
Sbjct: 544 ILEELRQDIASLQVMSSAIAQIDLLAN-FAYQARLK---SWNRPEFSPEIGIKIIAGRHP 599
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++ES+ + PN+ + M I+TGPNM GKST+++Q LI +LA G +VPA +
Sbjct: 600 VVESLSKTPYTPNDSSLDFNHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPAQSAR 659
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +DRIFTR+G+ D+L S STFM EM ET+ ++ + + +SL++MDE+GR TS+ DG +
Sbjct: 660 LGPIDRIFTRIGSADDLSSGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTYDGLS 719
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQLKD 538
+AW+C L +K +FA+H L+EL I +++V + N L +++
Sbjct: 720 LAWACVLDLTKRIKCLCLFATHYFELTELGQ---EAGIDNYHVTAKEMNGNLILLHKVQP 776
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
GP H GL +A++AG+P++VI+ A+ + K++ + ++
Sbjct: 777 GPASQSH-GLQVAKLAGIPASVIKEAQKRLKILEKQQQQHLQ 817
>gi|44888185|sp|Q7W880.2|MUTS_BORPA RecName: Full=DNA mismatch repair protein MutS
Length = 883
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 181/609 (29%), Positives = 283/609 (46%), Gaps = 68/609 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+ + L + + +LF +L +T G+RLLR L PL++ E +
Sbjct: 275 LDPVTRRNLELTQTL------SGEESPTLFSLLDGCRTPMGSRLLRRWLHHPLRENEPVL 328
Query: 63 TRLDCLDELMS----NEQLFF--GLSQFLR----KFPKETDRVLCHFCFK---PKKVTSK 109
R + +++ EQ F GL + LR FP + +R+ + P+++ S
Sbjct: 329 ARQHAIATMLTVRQEGEQAFAAAGLLETLRDALNAFP-DIERIAARVALRSVRPRELAS- 386
Query: 110 VLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYA--SI 167
L+ AL ALP L L A + S E A ++
Sbjct: 387 -------------------LRDALVALPALHASL--------APLSGSPRARELAAQLAM 419
Query: 168 RKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYRE 227
IGE++ V A P VA + I G D LD R D + + L + RE
Sbjct: 420 PPDIGELLARAV--ASEPAVA-IRDGGVIAAGFDSELDELRALATDGGDFLVQLEARERE 476
Query: 228 ELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKS 287
+ NL++ FN GFY+ + K K+P + + N T EL + R S
Sbjct: 477 RTGIGNLRVEFNRVHGFYIEV-SKGQTDKVPEDYRRRQTLKNAERYITPELKTWEDRVLS 535
Query: 288 AAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
A R + E L+DA+ + V L+ A L LD + H + P
Sbjct: 536 AQDRSLAREKWLYEQLLDALAQYVRPLSQCASALAELDTLAALAEHARRHD----WVAPE 591
Query: 348 FTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
+ + I+ GRHP++E F PN + + M+++TGPNM GKSTY++QV LI +
Sbjct: 592 LIDGAEIDIEAGRHPVVERAIERFTPNGCRLDQTRRMLLITGPNMGGKSTYMRQVALIAL 651
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
LA+ G +VPA + + +DRIFTR+G D+L STFM EM E A ++ + SL++M
Sbjct: 652 LARTGSFVPATRARVGRLDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAASTPASLVLM 711
Query: 468 DELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
DE+GR TS+ DG A+AW+ LL+ +A T+FA+H L+ L P +H
Sbjct: 712 DEIGRGTSTYDGLALAWAIAYRLLTHNRALTLFATHYFELTRLPAEQPTAANVHLAAAES 771
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQY 586
+ F ++++GP YG+ +A+ AG+P+ VI R +E++R+E
Sbjct: 772 AGGIVFLHEVREGPASR-SYGIQVAQRAGVPAAVI--------RQASRELERLEAQGAPT 822
Query: 587 KQIQMLYHA 595
Q+ + A
Sbjct: 823 PQLGLFAAA 831
>gi|399575656|ref|ZP_10769414.1| DNA mismatch repair protein mut [Halogranum salarium B-1]
gi|399239924|gb|EJN60850.1| DNA mismatch repair protein mut [Halogranum salarium B-1]
Length = 894
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 163/578 (28%), Positives = 283/578 (48%), Gaps = 50/578 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E + + SL L T T G RLLR L +P +D +
Sbjct: 257 LELDATTQRNLELTETMQG------RRDGSLLDTLDHTVTSPGGRLLREWLTRPRRDPDE 310
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ R C+ L S +E R + + +++ S+ + ++
Sbjct: 311 LRRRQTCVSALASE------------ALAREQVRDVLDGAYDLERLASRS--ASGSAGAR 356
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCEN---EKYASIRKRIGEVIDE 177
L+S ++ LP L ++ S L+ + R V E E A++ + + + E
Sbjct: 357 ELLS----VRDTFAILPALVDAIE--GSRLVDSPLRDVVERPDREAAAALHDELDDALAE 410
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P TQ +G D L D+ R S + +L + + E + +L++
Sbjct: 411 E------PPKTVTQGELFKRGYDDELDDLIERHESAKS-WLDDLGPREKREHGIQHLQVD 463
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTF--IQVVKHGNNIHCSTLELASLNV-RNKSAAGECYI 294
N G+Y+ + + ++P + I+ +K+ LE ++ R + G+
Sbjct: 464 RNKTDGYYIQVGKSNTD-RVPEHYREIKTLKNSKRYVTDELEEKERDILRLEEVRGDLEY 522
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
+ L + + E +L + L +D + + H + RP E L
Sbjct: 523 E---LFQDLRERVAEQAELLQDVGRTLAEVDTLASLATHAAGND----WVRPELDEGDAL 575
Query: 355 AIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+ GRHP++E DF+PN++ + + +IVTGPNMSGKSTY++Q LI +LAQ+G +
Sbjct: 576 TIEAGRHPVVEQT-TDFVPNDLRLDQRRGFLIVTGPNMSGKSTYMRQAALITLLAQVGSF 634
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA +T+ VVD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE+GR T
Sbjct: 635 VPARSATVGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDEVGRGT 694
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
++ DG +IAW+ E+L + ++A T+FA+H L+ LA P V +H R+ + F
Sbjct: 695 ATYDGISIAWAATEYLHNEVRAKTLFATHYHELTSLADHLPRVANVHVAADERDGDVTFL 754
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
+ DGP YG+ +A++AG+P V++ A + R+
Sbjct: 755 RTVVDGPTDR-SYGIHVADLAGVPKPVVDRATDVLGRL 791
>gi|145631568|ref|ZP_01787335.1| DNA mismatch repair protein [Haemophilus influenzae R3021]
gi|144982837|gb|EDJ90359.1| DNA mismatch repair protein [Haemophilus influenzae R3021]
Length = 861
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 178/627 (28%), Positives = 305/627 (48%), Gaps = 62/627 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 267 IQLDAATRRNLELTQNLAG---GTEN---TLSSVLDKCVTPMGSRLLKRWIHQPVRDVEK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 321 LKQRQQSIAEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVID 176
L+TAL+ +P+L +++ L ++ + + +E+Y +++ + E
Sbjct: 370 -----------LRTALEQIPVLRTIVQQKTPPFLTALFSQIADFSEQYDLLQRALIET-- 416
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
P + R A G + LD R ++ + NL + RE + LK+
Sbjct: 417 -------PPLLIRDGGVIA--KGYNAELDEWRMLSDGATQYLENLEKRERESTGIDTLKI 467
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
FN G+Y+ I K P +++ N EL + + G
Sbjct: 468 GFNAVHGYYIQISQGQAH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALE 526
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPL 354
+ + L D + + L L + L LD++VN A T++ Y P F + +
Sbjct: 527 KQLYDELFDLLLPHLGSLQLASLALSELDVLVNLAERADTLN------YVMPTFCDEVSV 580
Query: 355 AIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GRHP++E + D FI N + ++ +++I+TGPNM GKSTY++Q LI +LA IG
Sbjct: 581 KIKNGRHPVVEQVLKDPFIANPVELNHNRHLLIITGPNMGGKSTYMRQTALITLLAYIGS 640
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +DRIFTR+G D+L S STFM EM E A ++ + +SL+++DE+GR
Sbjct: 641 FVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATAQSLVLIDEIGRG 700
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+C E L +++ T+FA+H L+ L + +H + NN + F
Sbjct: 701 TSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIHLDALEHNNTIAF 760
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++DG YGL +A +AG+P +VI+ A+ +++ K E +QIQ L
Sbjct: 761 MHAVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSGHSAE------QQIQAL 813
Query: 593 YHAAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A++ L
Sbjct: 814 REANHNQGEL-FFEQETDALREAIEKL 839
>gi|443320386|ref|ZP_21049489.1| DNA mismatch repair protein MutS [Gloeocapsa sp. PCC 73106]
gi|442789896|gb|ELR99526.1| DNA mismatch repair protein MutS [Gloeocapsa sp. PCC 73106]
Length = 866
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 180/579 (31%), Positives = 292/579 (50%), Gaps = 48/579 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + ++ SL L T T G+R LR LLQPL DI+ I
Sbjct: 301 LDPQTRRNLEITQTVRDGIF-----HGSLLWALDRTCTAMGSRALRRWLLQPLLDIKGIL 355
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + EL++N L L Q L+ + ++++ +V ++ L
Sbjct: 356 ARQQTIKELINNLNLREDLRQILKNI------------YDLERLSGRV--AAGTANARDL 401
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRI-GEVIDEDVLH 181
+S L +L L L++++ A+S L + + E E+ A KRI +++ H
Sbjct: 402 LS----LAESLSKLNELSELVSGAKSLYLQALQQVPPELEQMA---KRISAHIVESPPQH 454
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
+ + I+ GI+ LD R++ + + + NL RE+ K+ NLK+ +N
Sbjct: 455 LK--------EGGLIRDGINPELDQMRQNLVEDQQWLANLELTEREKTKITNLKVGYNKT 506
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+YLS+P + +P + + N T EL + R SA +
Sbjct: 507 FGYYLSLP-RSKASLVPDHYERKQTLLNEERYITAELKARETRILSARDDLNQLEYEVFS 565
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
AL I E V + +A+ + +D++ + Y P T +AI GRH
Sbjct: 566 ALRLEIAEKVQEIRNIAKAVAAIDILAGLAEIAVEQG----YCCPEITPERKIAITDGRH 621
Query: 362 PILESIHND--FIPNNIFISEA----ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
P++E F+PN+ + E+ +++I+TGPN SGKS YL+QV LI +++Q+G YV
Sbjct: 622 PVVEQSLGAGFFVPNSTQMGESNSDCPDLIILTGPNASGKSCYLRQVGLIQLMSQVGSYV 681
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
A +++ V DRIFTR+G VD+L + STFM EM ETA ++ + + RSL+++DE+GR T+
Sbjct: 682 SATKASLGVCDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATPRSLVLLDEIGRGTA 741
Query: 476 SSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IAW+ E+L + ++A TIFA+H L+ELA+I NV V + + F
Sbjct: 742 TFDGLSIAWAVAEYLATEIQARTIFATHYHELNELASILENVANYQVTVKEMPHEIIFLH 801
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
Q+ G YG+ +AGLP VI+ A+ + +I K
Sbjct: 802 QVHPGGADR-SYGIEAGRLAGLPPQVIQRAKQVMGQIEK 839
>gi|239623741|ref|ZP_04666772.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521772|gb|EEQ61638.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 888
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 182/614 (29%), Positives = 298/614 (48%), Gaps = 76/614 (12%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID ++ RNLE++E + K+ +L +L TKT G RLLR + QPL E
Sbjct: 268 MVIDTSTRRNLELVETMRE-----KQKRGTLLWVLDKTKTAMGARLLRTYIEQPLIHKEE 322
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R ++EL N + ++L + +R++ +K T+ D
Sbjct: 323 IVKRQTAVEELNMNYISREEICEYLNPI-YDLERLIGRISYK----TANPRD-------- 369
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I K +L+ LP + ++L + LL + + E + I I + I ED
Sbjct: 370 -----LIAFKNSLEMLPHIKQILGEFSGELLRGLAQ---EMDPLQDIYGLIDQAILEDP- 420
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P R + IK G D R++ + + + L + +E+ + LK+ FN
Sbjct: 421 ----PVTVR--EGGIIKDGYHEEADRLRQAKTEGKDWLAELEAREKEKTGIKTLKIKFNK 474
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGE---- 291
G+Y + + + ++P F++ N +T EL L K + E
Sbjct: 475 VFGYYFEVTNS-FKDQVPDYFVRKQTLTNAERFTTDELKHLEDIIMGAEEKLVSLEYDLF 533
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
C +R I A V I++ + + +V C L ++ Y +P E
Sbjct: 534 CQVRDSIA--AQVVRIQKTAKAIAGV-DVFCSLSVVATR----------RNYVKPMMNEK 580
Query: 352 GPLAIDGGRHPILESIHND--FIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVIL 408
G + I GRHP++E + D F+ N+ F+ N + ++TGPNM+GKSTY++QV LIV++
Sbjct: 581 GVIQIKNGRHPVVEQMMRDDLFVANDTFLDNGKNRLSVITGPNMAGKSTYMRQVALIVLM 640
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ+G +VPA + I + DRIFTR+G D+L S STFM EM E A +++N + SL+V+D
Sbjct: 641 AQLGSFVPAQEADIGICDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRNSLLVLD 700
Query: 469 ELGRATSSSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVI 525
E+GR TS+ DG +IAW+ EH+ S K A T+FA+H L+EL VK ++ + +
Sbjct: 701 EIGRGTSTFDGLSIAWAVIEHISSTKLLGAKTLFATHYHELTELEGTIAGVK--NYCIAV 758
Query: 526 RNNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK-------KE 575
+ D F ++ G YG+ +A++AG+P +VI A+ I ++ KE
Sbjct: 759 KEQGDDIVFLRKIVRGGADK--SYGIQVAKLAGVPDSVIARAKEIAEELSDADITARAKE 816
Query: 576 VKRMEINCLQYKQI 589
+ + N Q+K +
Sbjct: 817 IAEISSNITQHKAV 830
>gi|412339108|ref|YP_006967863.1| mismatch repair protein [Bordetella bronchiseptica 253]
gi|408768942|emb|CCJ53715.1| mismatch repair protein [Bordetella bronchiseptica 253]
Length = 865
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 181/609 (29%), Positives = 283/609 (46%), Gaps = 68/609 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+ + L + + +LF +L +T G+RLLR L PL++ E +
Sbjct: 257 LDPVTRRNLELTQTL------SGEESPTLFSLLDGCRTPMGSRLLRRWLHHPLRENEPVL 310
Query: 63 TRLDCLDELMS----NEQLFF--GLSQFLR----KFPKETDRVLCHFCFK---PKKVTSK 109
R + +++ EQ F GL + LR FP + +R+ + P+++ S
Sbjct: 311 ARQHAIATMLTARQEGEQAFAAAGLLETLRDALNAFP-DIERIAARVALRSVRPRELAS- 368
Query: 110 VLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYA--SI 167
L+ AL ALP L L A + S E A ++
Sbjct: 369 -------------------LRDALVALPALHASL--------APLSGSPRARELAAQLAM 401
Query: 168 RKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYRE 227
IGE++ V A P VA + I G D LD R D + + L + RE
Sbjct: 402 PPDIGELLARAV--ASEPAVA-IRDGGVIAAGFDSELDELRALATDGGDFLVQLEARERE 458
Query: 228 ELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKS 287
+ NL++ FN GFY+ + K K+P + + N T EL + R S
Sbjct: 459 RTGIGNLRVEFNRVHGFYIEV-SKGQTDKVPEDYRRRQTLKNAERYITPELKTWEDRVLS 517
Query: 288 AAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
A R + E L+DA+ + V L+ A L LD + H + P
Sbjct: 518 AQDRSLAREKWLYEQLLDALAQYVRPLSQCASALAELDTLAALAEHARRHD----WVAPE 573
Query: 348 FTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
+ + I+ GRHP++E F PN + + M+++TGPNM GKSTY++QV LI +
Sbjct: 574 LIDGAEIDIEAGRHPVVERAIERFTPNGCRLDQTRRMLLITGPNMGGKSTYMRQVALIAL 633
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
LA+ G +VPA + + +DRIFTR+G D+L STFM EM E A ++ + SL++M
Sbjct: 634 LARTGSFVPATRARVGRLDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAASTPASLVLM 693
Query: 468 DELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
DE+GR TS+ DG A+AW+ LL+ +A T+FA+H L+ L P +H
Sbjct: 694 DEIGRGTSTYDGLALAWAIAYRLLTHNRALTLFATHYFELTRLPAEQPTAANVHLAAAES 753
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQY 586
+ F ++++GP YG+ +A+ AG+P+ VI R +E++R+E
Sbjct: 754 AGGIVFLHEVREGPASR-SYGIQVAQRAGVPAAVI--------RQASRELERLEAQGAPT 804
Query: 587 KQIQMLYHA 595
Q+ + A
Sbjct: 805 PQLGLFAAA 813
>gi|255319932|ref|ZP_05361132.1| DNA mismatch repair protein MutS [Acinetobacter radioresistens
SK82]
gi|255302952|gb|EET82169.1| DNA mismatch repair protein MutS [Acinetobacter radioresistens
SK82]
Length = 883
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 168/582 (28%), Positives = 303/582 (52%), Gaps = 45/582 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEII+PL GTS LFH++ +T G+RLL L+QP++D +
Sbjct: 277 LDPVTRRNLEIIDPLFE--HGTS-----LFHLINECQTAMGSRLLSRTLMQPIRDTVILE 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD +++L+ + + K + +RVL T++ D+ +++
Sbjct: 330 ARLDAIEQLVKG--YHEAPVRLVLKEISDIERVLSRIALG----TARPRDLVQLRQA--- 380
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
S I L+ AL V+ + ++ +L +Y+ + + + + +R+ I E+
Sbjct: 381 CSQIPFLRHALQP------VIDNKKTKMLHQLYQELGD---FKVLSERLSSAIVENP--- 428
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G D LD R+ + + +L + RE+ + LK+ +N
Sbjct: 429 --PVLLRDGNVIA--EGFDHELDELRKIRDHAGQFLIDLEIQEREQTGISTLKIGYNRVS 484
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + + P +I+ N T EL S + S+ R ++ E
Sbjct: 485 GYYIELTRAQAE-QAPEHYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKLLFEL 543
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
+++ +R+D++ L +++ + +D++ N FA+ K + RP F+ + I GRHP
Sbjct: 544 ILEELRQDIASLQVMSSAIAQIDLLAN-FAYQARLK---SWNRPEFSPEVGIKIIAGRHP 599
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++ES+ + PN+ + M I+TGPNM GKST+++Q LI +LA G +VPA +
Sbjct: 600 VVESLSKTPYTPNDTSLDFNHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPAQSAR 659
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +DRIFTR+G+ D+L S STFM EM ET+ ++ + + +SL++MDE+GR TS+ DG +
Sbjct: 660 LGPIDRIFTRIGSADDLSSGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTYDGLS 719
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--NNRLDFKFQLKD 538
+AW+C L +K +FA+H L+EL I +++V + N L +++
Sbjct: 720 LAWACVLDLTKRIKCLCLFATHYFELTELGQ---EAGIDNYHVTAKEMNGNLILLHKVQP 776
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
GP H GL +A++AG+P++VI+ A+ + K++ + ++
Sbjct: 777 GPASQSH-GLQVAKLAGIPASVIKEAQKRLKILEKQQQQHLQ 817
>gi|427719425|ref|YP_007067419.1| DNA mismatch repair protein MutS [Calothrix sp. PCC 7507]
gi|427351861|gb|AFY34585.1| DNA mismatch repair protein MutS [Calothrix sp. PCC 7507]
Length = 863
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 180/597 (30%), Positives = 292/597 (48%), Gaps = 75/597 (12%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + SL L T T G R LR LLQPL D + I
Sbjct: 304 VDHQTRRNLEITQTVRDGTF-----HGSLLWALDRTSTAMGGRALRRWLLQPLLDTKGIR 358
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + EL+ N L L Q LR+ + +++T + A
Sbjct: 359 ARQDTIQELVENTALRQDLRQLLRQI------------YDLERLTGR------AGSGTAN 400
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L +L LP L++++ A S L + +K I + + + + +++ +
Sbjct: 401 AKDLVALADSLSRLPELSRLVDQAHSPFLKAL-------QKVPPILEDLAQKLHNNIVES 453
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + ++ I+ G++ LLD + + + + NL R + +P LK+ FN
Sbjct: 454 --PPI-HIKEGSLIRSGVNPLLDERKATVEADQQWIANLEVDERAKTGIPTLKVGFNKTF 510
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE---------CY 293
G+Y+SI ++P +I+ N T EL R SA +
Sbjct: 511 GYYISISRAKAD-QVPVNYIRKQTLTNEERYITPELKEREARILSARDDLNQLEYEIFVE 569
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLC-LLDMIVNSFAHTISTKPVDRYTRPHFTENG 352
+R E+ +A V IR ++S A+VLC L D+ V+ Y RP
Sbjct: 570 LREEVGSQAEV--IR-NLSRAVAAADVLCGLADLAVHQG-----------YCRPEMLVGR 615
Query: 353 PLAIDGGRHPILES--IHNDFIPNNIFISEAA-------------NMVIVTGPNMSGKST 397
+ I GRHP++E F+PN+ + + + +++I+TGPN SGKS
Sbjct: 616 EIGIVDGRHPVVEQSLPAGFFVPNSTQLGQESLTNDQRQMTNDNPDLIILTGPNASGKSC 675
Query: 398 YLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQ 457
YL+QV LI ++AQ G +VPA F+ + V DRIFTR+G VD+L + STFM EM ETA ++
Sbjct: 676 YLRQVGLIQLMAQTGSFVPARFAKLGVCDRIFTRVGAVDDLATGQSTFMVEMNETANILN 735
Query: 458 NVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516
+ + RSL+++DE+GR T++ DG +IAW+ E+L + +++ TIFA+H L+ELA + NV
Sbjct: 736 HATSRSLVLLDEIGRGTATFDGLSIAWAVAEYLATDIQSRTIFATHYHELNELAGMLENV 795
Query: 517 KILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
V +++ F Q++ G YG+ +AGLP+ VI+ A+ + +I K
Sbjct: 796 ANYQVTVKELPDQIIFLHQVQPGGAD-KSYGIEAGRLAGLPAVVIQRAKQVMGQIEK 851
>gi|160933107|ref|ZP_02080496.1| hypothetical protein CLOLEP_01950 [Clostridium leptum DSM 753]
gi|156868181|gb|EDO61553.1| DNA mismatch repair protein MutS [Clostridium leptum DSM 753]
Length = 873
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 184/588 (31%), Positives = 304/588 (51%), Gaps = 56/588 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID + RNLE++E + + K+ SL +L TKT G RLLR + QPL
Sbjct: 269 MGIDLNTRRNLELLETMRN-----KEKRGSLLWVLDQTKTAMGKRLLRTWIEQPLLSCGK 323
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + ++EL + L L+ D++ F + + +T V N ++ +
Sbjct: 324 IIRRQNAVEELYCDPFLCGNLA----------DQLTGVFDLQ-RLITRIVYGTANGRELR 372
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+L ++I LL P L K+L++ +S LL +IY + E + + G ++D+
Sbjct: 373 SLSATIGLL-------PELKKMLENRKSELLQSIYEDLDTLEDVHDLIE--GSIVDDP-- 421
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
PF R + I+ G + +D R+ + V + + RE+ +P L++ +N
Sbjct: 422 ----PFSVR--EGGIIREGYNQEVDELRKDMTGGKDYVAAIEKREREKTGIPKLRVGYNR 475
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+YL + + + ++P ++I+ N T EL L R A C + L
Sbjct: 476 VFGYYLEVTNS-YKDQVPDSYIRKQTLTNCERYVTQELKDLEGRILGAKDRC-----VQL 529
Query: 301 E-ALVDAIREDVSV----LTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D IR VS + + + LD++ SFA ++ K ++Y RP +G +
Sbjct: 530 EYRLFDDIRTTVSAQQERVQKTSNAIAQLDVLC-SFAR-VAVK--NQYCRPEVNLSGKIV 585
Query: 356 IDGGRHPILE--SIHNDFIPNNIFISEAANMVIV-TGPNMSGKSTYLQQVCLIVILAQIG 412
+ RHP++E S + F+PN+ + + N V+V TGPNM+GKSTY++Q+ LI ++AQ+G
Sbjct: 586 LKESRHPVVELLSDASPFVPNDALLDQDENRVLVITGPNMAGKSTYMRQIALIALMAQLG 645
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I +VD+IFTR+G D+L S STFM EM E A +++ + SL+V+DE+GR
Sbjct: 646 SFVPAASAEIGLVDQIFTRVGASDDLASGQSTFMVEMNEVADILKRATSNSLLVLDEIGR 705
Query: 473 ATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
TS+ DG +IA + E ++ L A T+FA+H L+E+ + VK V R +
Sbjct: 706 GTSTFDGMSIARAVLEFVVDKRKLGAKTLFATHYHELTEMEELMDGVKNYSIAVKKRGDD 765
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI-TKKEV 576
+ F ++ G YG+ +A++AGLP VI A+ + + T +EV
Sbjct: 766 ITFLRRIIRGGAD-DSYGIEVAKLAGLPQPVINRAKQVLKELETGQEV 812
>gi|411012059|ref|ZP_11388388.1| DNA mismatch repair protein MutS [Aeromonas aquariorum AAK1]
Length = 860
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 175/570 (30%), Positives = 282/570 (49%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L G N +L +L T T G+RLL+ + QP++D +
Sbjct: 278 MDAATRRNLELTQNLAG---GHDN---TLSAVLDCTATPMGSRLLKRWIHQPIRDRVILK 331
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R + EL+ + L+ L LR+ + +RVL + P+ +T
Sbjct: 332 GRQSTIKELI-EQNLYDELGGLLRQV-GDVERVLARLALRSARPRDLTR----------- 378
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ A LP L ++L ++ + +V + + AS + ++++ V
Sbjct: 379 ---------LRQAFAQLPELQRLLAGSE-------HEAVQQLRERASTFPELFDLLERAV 422
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ VP V + I+ G + LD R + ++ + + R + LK+ +N
Sbjct: 423 ME--VPPVL-IRDGGVIREGFNTELDELRDLANGATASLARIEERERLLTGINTLKVGYN 479
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GFY+ + + +P+ +I+ NN EL + +A + +
Sbjct: 480 KVHGFYIEVSRANSH-LVPAHYIRRQTLKNNERYIIDELKKYEDKVLTAQAQALALEKRL 538
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAID 357
E L+DA+ + L A L LD++ N A T+ Y P E + I
Sbjct: 539 YEELLDALLPHLGDLQESAAALAELDVLANLAERAETLD------YRCPTLIEEDQILIK 592
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D FI N I + M+I+TGPNM GKSTY++Q LIV+LA IG +VP
Sbjct: 593 AGRHPVVEQVMTDPFIANPIRLERERRMLIITGPNMGGKSTYMRQTALIVLLAHIGAFVP 652
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + RSL++MDE+GR TS+
Sbjct: 653 ADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLMDEIGRGTST 712
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C E L S + AYT+FA+H L+ L + + +H V + + F
Sbjct: 713 YDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMSGLANVHLDAVEHGDTIAFMHA 772
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++G YGL +A +AG+P +VI+ AR
Sbjct: 773 VQEGAASR-SYGLQVAALAGVPKSVIQQAR 801
>gi|417002251|ref|ZP_11941640.1| DNA mismatch repair protein MutS [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479392|gb|EGC82488.1| DNA mismatch repair protein MutS [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 868
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 174/585 (29%), Positives = 305/585 (52%), Gaps = 53/585 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ++A++ +NLE LH L + K+ SL +L T+ G+R++ L +PL D
Sbjct: 273 MQLEASTRKNLE----LHRNLNNNT-KENSLLSILDKADTVMGSRMINEYLERPLIDKVQ 327
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++ L+++ L +S +L + +R++ +K NA+
Sbjct: 328 IEKRLDIVETLLNDSILSTNISNYLSDI-YDLERLVAKISYKRA----------NAR--- 373
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I +K ++ +P L ++L + + NI ++ + + I ++ID ++
Sbjct: 374 ----DLISIKNSIYNIPKLKEILVNHDDQNIKNIGINIPDID-------FIYDLIDISIV 422
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A T+ I+ G D LD + + N ++ + N K+ +N
Sbjct: 423 SD--PPIAITEGGM-IRKGYDKSLDELKELSSSAQSKLIEYENSEKKATGIKNYKIVYNK 479
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLELAS---LNVRNKSAAGECYIR 295
G+ + I ++ K+PS+++ Q +K+ TLE S L ++K E I
Sbjct: 480 NNGYSIEITKSNLD-KVPSSYVRKQTLKNQERYTTETLEEISELILGGKDKINNLEYEIF 538
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
++ E L + I+ L LA+++ +D + N+FA + Y RP + +
Sbjct: 539 KKVRDEILKNTIK-----LQALAKMIANIDTL-NTFAKIARD---NAYVRPEIRTDNLIK 589
Query: 356 IDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIG 412
I RHP++E+ N+FIPN+ I E N++ I+TGPNM+GKSTY++Q+ +I+ILAQ+G
Sbjct: 590 IKDSRHPVIENNLNENEFIPNDTDIGEDDNLIQIITGPNMAGKSTYMRQMAIIIILAQMG 649
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA + I + D++FTR+G DN+ STFM EM E + +++N +E S +++DE+GR
Sbjct: 650 SFVPATSAQISICDQVFTRIGASDNISKGESTFMLEMNEVSSILKNSTENSFVILDEVGR 709
Query: 473 ATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TSS DG +IA + E+L K T+FA+H L+ + NVK L ++ NN L
Sbjct: 710 GTSSDDGLSIAMAIVEYLSKKKKVKTVFATHFHELTIMENELDNVKNLKIEILEENNNLV 769
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F ++K G + YG+ +A+++GLP VIE A+ I ++ ++V
Sbjct: 770 FLRKIKKG-KSDRSYGIEVAKLSGLPDEVIENAKLIMDKLGSEDV 813
>gi|224824756|ref|ZP_03697863.1| DNA mismatch repair protein MutS [Pseudogulbenkiania ferrooxidans
2002]
gi|224603249|gb|EEG09425.1| DNA mismatch repair protein MutS [Pseudogulbenkiania ferrooxidans
2002]
Length = 848
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 208/372 (55%), Gaps = 9/372 (2%)
Query: 196 IKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQG 255
I G LD R + E + L + +E +P+LK+ FN GFY+ + QG
Sbjct: 420 INHGFSANLDELRAIQTNCGEFLLQLEAREKERTGIPSLKVEFNRVHGFYIEV--SKAQG 477
Query: 256 -KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVL 314
K+P + + N T EL + SA + E L+D + ++ L
Sbjct: 478 DKVPDDYRRRQTLKNAERYITPELKEFEDKALSANDRALALEKQLYETLLDELAPHIAEL 537
Query: 315 TLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPN 374
L+A+ + LD ++ +FA T+ Y P F + L I GRHP++E+ FI N
Sbjct: 538 QLIAQAVATLD-VLAAFARHAETR---NYVEPEFVDEVRLEIIEGRHPVVEAEVERFIAN 593
Query: 375 NIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGT 434
+ +S++ ++++TGPNM GKSTY++Q LI +LA +G +VPA + + +DRIFTR+G
Sbjct: 594 DSCLSDSRKLLLITGPNMGGKSTYMRQTALITLLAHVGSFVPADSAVLGPIDRIFTRIGA 653
Query: 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL- 493
D+L STFM EM ETA ++ N S++SL++MDE+GR TS+ DG A+AW+ + L+
Sbjct: 654 SDDLAGGRSTFMVEMTETANILNNASDKSLVLMDEVGRGTSTFDGLALAWAIAKALIEKN 713
Query: 494 KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEV 553
+AYT+FA+H L+ LA+ YP V +H + +++ F ++DGP YGL +A++
Sbjct: 714 RAYTLFATHYFELTRLASDYPGVANVHLSAIEHKDKIVFLHHVEDGPAS-QSYGLAVAQL 772
Query: 554 AGLPSTVIETAR 565
AG+P VI AR
Sbjct: 773 AGVPGKVIREAR 784
>gi|54310168|ref|YP_131188.1| DNA mismatch repair protein MutS [Photobacterium profundum SS9]
gi|81697302|sp|Q6LMU0.1|MUTS_PHOPR RecName: Full=DNA mismatch repair protein MutS
gi|46914609|emb|CAG21386.1| putative DNA mismatch repair protein MutS [Photobacterium profundum
SS9]
Length = 856
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 177/626 (28%), Positives = 301/626 (48%), Gaps = 53/626 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L T L +L T T G+RLL+ L QP++D + +N
Sbjct: 268 LDAATRRNLELTQNLSGGFDNT------LASVLDHTATPMGSRLLKRWLHQPIRDTKQLN 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + + +F +++ L + +R+L + +
Sbjct: 322 HRLDAI-AAFKDTGMFIEVAEVLHHM-GDLERILARLALRSARP---------------- 363
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ +++AL +LP LA +L D + + E KY++ + E+++ ++
Sbjct: 364 -RDLARMRSALQSLPQLADLLADIEQ-------PRIGELAKYSAPMDELCELLERAIIE- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R + + +L + RE+ + +LK+ FN
Sbjct: 415 NPPVIIRDGGVLA--PGYNAELDEWRDLADGAKKFLDDLETREREQHGIDSLKVGFNQVH 472
Query: 243 GFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
GF++ I Q L P +++ N EL + S+ + + E
Sbjct: 473 GFFIQISRG--QSHLAPDHYVRRQTLKNAERYIIPELKEHEDKVLSSKSKALGLEKKLWE 530
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L D + + L A L LD++ N A T++ Y RP T+ + I G
Sbjct: 531 ELFDQLLPHLERLQNAASALSELDVLANLAERADTLN------YCRPELTDQTGIEIAAG 584
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + ++ FI N + M+I+TGPNM GKSTY++Q LI ++A +G +VPA
Sbjct: 585 RHPVVEQVLSEPFIANPTSLHHDRRMLIITGPNMGGKSTYMRQTALIALMAHVGSFVPAE 644
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
I +DRIFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR TS+ D
Sbjct: 645 AVKIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSKSLVLMDEIGRGTSTYD 704
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+ E L + A T+FA+H L+EL ++ + +H V + + F ++
Sbjct: 705 GLSLAWASAEWLAEKISAMTLFATHYFELTELPSMMDGLANVHLDAVEHGDEIAFMHAVQ 764
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRIT----KKEVKRMEINCLQYKQIQMLY 593
+G YGL +A +AG+P VI+ A++ +++ ++ +K + +Q+ +L
Sbjct: 765 EGAAS-KSYGLAVASLAGVPKAVIKRAKAKLTQLETTGHQQAIKNPSKAPREEQQLTLLP 823
Query: 594 HAAQRLICLKYSNQDEESIRHALQNL 619
+ L N DE + R AL L
Sbjct: 824 EPSDVEEALAKVNPDEMTPRQALDEL 849
>gi|296104417|ref|YP_003614563.1| DNA mismatch repair protein MutS [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058876|gb|ADF63614.1| DNA mismatch repair protein MutS [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 853
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 179/568 (31%), Positives = 284/568 (50%), Gaps = 51/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L G N +L +L T T G+R+L+ L P++D +T+
Sbjct: 269 MDAATRRNLEITQNLAG---GVEN---TLASVLDNTVTPMGSRMLKRWLHMPVRDTDTLV 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L + L LR+ + +R+L + T++ D+
Sbjct: 323 CRQQTIAALQDR---YTELQPVLRQV-GDLERILARLALR----TARPRDLAR------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L L D S + + ++ E +A +R E+++ ++ A
Sbjct: 368 ------MRHAFQQLPELRAQLSDVDSAPVQKLRETMGE---FAELR----ELLERAIIDA 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE L L LK+ +N
Sbjct: 415 -PPVLVRDGGVIA--PGYNEELDEWRALADGATDYLDKLEIRERERLGLDTLKVGYNAVH 471
Query: 243 GFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ I Q L P +++ N EL + ++ G+ + +
Sbjct: 472 GYYIQISRG--QSHLAPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYD 529
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L D + ++ L L A L LD++VN A T++ YT P FT+ + I G
Sbjct: 530 ELFDMLMPHLADLQLSAGALAELDVLVNLAERAETLN------YTCPTFTDKPGIRITEG 583
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + N+ FI N + +S M+I+TGPNM GKSTY++Q LI +LA IG YVPA
Sbjct: 584 RHPVVEQVLNEPFIANPLSLSPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQ 643
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ D
Sbjct: 644 KVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTYD 703
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E+L + +KA T+FA+H L++L V +H + + + F ++
Sbjct: 704 GLSLAWACAENLANKIKAMTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHTVQ 763
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+G YGL +A +AG+P VI+ AR
Sbjct: 764 EGAAS-KSYGLAVAALAGVPKEVIKRAR 790
>gi|381402662|ref|ZP_09927346.1| DNA mismatch repair protein MutS [Pantoea sp. Sc1]
gi|380735861|gb|EIB96924.1| DNA mismatch repair protein MutS [Pantoea sp. Sc1]
Length = 853
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 177/568 (31%), Positives = 290/568 (51%), Gaps = 49/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T T G+R+L+ L PL+D+ TI
Sbjct: 271 MDAATRRNLEITQNLAG---GTDN---TLAAVLDKTVTPMGSRMLKRWLHMPLRDVRTIT 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + EL ++ L LR+ + +R+L + T++ D+
Sbjct: 325 QRQESIAELQPLSEV---LQPVLRQV-GDLERILARLALR----TARPRDLAR------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L ++L D ++ L + + E +A++R E++++ ++ +
Sbjct: 370 ------MRHAFQQLPELNQLLADVEAPQLQKLRTQMGE---FAALR----ELLEQAIIDS 416
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE+L L LK+ FN
Sbjct: 417 -PPVLIRDGGVIA--PGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGFNGVH 473
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ + ++P +++ N EL + ++ G+ + EA
Sbjct: 474 GYFIQVSRAQSH-QVPMHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALSLEKSLYEA 532
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
L D + + L L A L LD++ N A T++ Y RP + + I GGR
Sbjct: 533 LFDQLLPHLEALQLSAAALAELDVLSNLAERAWTLN------YCRPVLQDKAGIKISGGR 586
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + + FI N + ++ M+I+TGPNM GKSTY++Q LI ++A IG +VPA
Sbjct: 587 HPVVEQVLKEPFIANPLSLAPQRRMLIITGPNMGGKSTYMRQAALIALMAWIGSFVPADE 646
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ DG
Sbjct: 647 TLIGPLDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYDG 706
Query: 480 FAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
++AW+C E+L + +KA T+FA+H L+ L V +H V + + F +++
Sbjct: 707 LSLAWACAENLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAVEHGDTIAFMHSVQE 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARS 566
G YGL +A +AG+P VI ARS
Sbjct: 767 GAAS-KSYGLAVAALAGVPKEVIRRARS 793
>gi|223019691|dbj|BAH22360.1| DNA mismatch repair protein MutS [Enterobacter cloacae]
Length = 853
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 179/568 (31%), Positives = 284/568 (50%), Gaps = 51/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L G N +L +L T T G+R+L+ L P++D +T+
Sbjct: 269 MDAATRRNLEITQNLAG---GVEN---TLASVLDNTVTPMGSRMLKRWLHMPVRDTDTLV 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L + L LR+ + +R+L + T++ D+
Sbjct: 323 CRQQTIAALQDR---YTELQPVLRQV-GDLERILARLALR----TARPRDLAR------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L L D S + + ++ E +A +R E+++ ++ A
Sbjct: 368 ------MRHAFQQLPELRAQLSDVDSAPVQKLRETMGE---FAELR----ELLERAIIDA 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE L L LK+ +N
Sbjct: 415 -PPVLVRDGGVIA--PGYNEELDEWRALADGATDYLDKLEIRERERLGLDTLKVGYNAVH 471
Query: 243 GFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ I Q L P +++ N EL + ++ G+ + +
Sbjct: 472 GYYIQISRG--QSHLAPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYD 529
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L D + ++ L L A L LD++VN A T++ YT P FT+ + I G
Sbjct: 530 ELFDMLMPHLADLQLSAGALAELDVLVNLAERAETLN------YTCPTFTDKPGIRITEG 583
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + N+ FI N + +S M+I+TGPNM GKSTY++Q LI +LA IG YVPA
Sbjct: 584 RHPVVEQVLNEPFIANPLSLSPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQ 643
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ D
Sbjct: 644 KVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTYD 703
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E+L + +KA T+FA+H L++L V +H + + + F ++
Sbjct: 704 GLSLAWACAENLANKIKAMTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHTVQ 763
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+G YGL +A +AG+P VI+ AR
Sbjct: 764 EGAAS-KSYGLAVAALAGVPKEVIKRAR 790
>gi|189464859|ref|ZP_03013644.1| hypothetical protein BACINT_01203 [Bacteroides intestinalis DSM
17393]
gi|189437133|gb|EDV06118.1| DNA mismatch repair protein MutS [Bacteroides intestinalis DSM
17393]
Length = 872
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 179/581 (30%), Positives = 297/581 (51%), Gaps = 58/581 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +VR+LE++ ++ G S SL +++ T + G RLL+ L+ PLKD+ IN
Sbjct: 268 LDKFTVRSLELVGSMND---GGS----SLLNVIDKTISPMGARLLKRWLVFPLKDVLPIN 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL+ + + FF F KE H +++ SKV +
Sbjct: 321 ERLNVV-------EYFFRQPDF-----KELIEEQLHLIGDLERIISKV------AVGRVS 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYR--SVCENEKYASIRKRIGEVIDEDVL 180
++ LK AL A+ + + +A + L I ++C+ SIR RI + I+ D
Sbjct: 363 PREVVALKVALQAIEPIKEACMEADNASLNRIGEQLNICK-----SIRDRIEKEINNDP- 416
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + + +K G++ LD R+ + + + + E ++P+LK+ +NN
Sbjct: 417 ----PLL--INKGGVMKSGVNAELDELRQIAYSGKDYLLQIQQRESELTEIPSLKIGYNN 470
Query: 241 RQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+Y+ + HKD K+P +I+ N T EL + A + I
Sbjct: 471 VFGYYIEVRNTHKD---KVPQEWIRKQTLANAERYITQELKEYEEKILGAEDKILILETQ 527
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
LV A+ E + + + A + LD ++ SFA+ + Y RP +N L I
Sbjct: 528 LYTELVQALSEFIPAIQVNANQIARLDCLL-SFANVARE---NNYIRPVIEDNDVLDIRQ 583
Query: 359 GRHPILES---IHNDFIPNNIFI-SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E I +I N++ + S + ++I+TGPNM+GKS L+Q LI +LAQIG +
Sbjct: 584 GRHPVIEKQLPIGEKYIANDVMLDSSSQQIIIITGPNMAGKSALLRQTALITLLAQIGSF 643
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +VD+IFTR+G DN+ STFM EM E A ++ N+S RSL++ DELGR T
Sbjct: 644 VPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNLSPRSLVLFDELGRGT 703
Query: 475 SSSDGFAIAWSCCEHL---LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAW+ EH+ KA T+FA+H L+E+ + +K + V +N++
Sbjct: 704 STYDGISIAWAIVEHIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVI 763
Query: 532 FKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
F +L + G H +G+ +A++AG+P ++++ A I ++
Sbjct: 764 FLRKLERGGSEH--SFGIHVAKMAGMPKSIVKRANDILKQL 802
>gi|33596868|ref|NP_884511.1| DNA mismatch repair protein MutS [Bordetella parapertussis 12822]
gi|33573569|emb|CAE37563.1| mismatch repair protein [Bordetella parapertussis]
Length = 913
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 181/609 (29%), Positives = 283/609 (46%), Gaps = 68/609 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+ + L + + +LF +L +T G+RLLR L PL++ E +
Sbjct: 305 LDPVTRRNLELTQTL------SGEESPTLFSLLDGCRTPMGSRLLRRWLHHPLRENEPVL 358
Query: 63 TRLDCLDELMS----NEQLFF--GLSQFLR----KFPKETDRVLCHFCFK---PKKVTSK 109
R + +++ EQ F GL + LR FP + +R+ + P+++ S
Sbjct: 359 ARQHAIATMLTVRQEGEQAFAAAGLLETLRDALNAFP-DIERIAARVALRSVRPRELAS- 416
Query: 110 VLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYA--SI 167
L+ AL ALP L L A + S E A ++
Sbjct: 417 -------------------LRDALVALPALHASL--------APLSGSPRARELAAQLAM 449
Query: 168 RKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYRE 227
IGE++ V A P VA + I G D LD R D + + L + RE
Sbjct: 450 PPDIGELLARAV--ASEPAVA-IRDGGVIAAGFDSELDELRALATDGGDFLVQLEARERE 506
Query: 228 ELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKS 287
+ NL++ FN GFY+ + K K+P + + N T EL + R S
Sbjct: 507 RTGIGNLRVEFNRVHGFYIEV-SKGQTDKVPEDYRRRQTLKNAERYITPELKTWEDRVLS 565
Query: 288 AAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
A R + E L+DA+ + V L+ A L LD + H + P
Sbjct: 566 AQDRSLAREKWLYEQLLDALAQYVRPLSQCASALAELDTLAALAEHARRHD----WVAPE 621
Query: 348 FTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
+ + I+ GRHP++E F PN + + M+++TGPNM GKSTY++QV LI +
Sbjct: 622 LIDGAEIDIEAGRHPVVERAIERFTPNGCRLDQTRRMLLITGPNMGGKSTYMRQVALIAL 681
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
LA+ G +VPA + + +DRIFTR+G D+L STFM EM E A ++ + SL++M
Sbjct: 682 LARTGSFVPATRARVGRLDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAASTPASLVLM 741
Query: 468 DELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
DE+GR TS+ DG A+AW+ LL+ +A T+FA+H L+ L P +H
Sbjct: 742 DEIGRGTSTYDGLALAWAIAYRLLTHNRALTLFATHYFELTRLPAEQPTAANVHLAAAES 801
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQY 586
+ F ++++GP YG+ +A+ AG+P+ VI R +E++R+E
Sbjct: 802 AGGIVFLHEVREGPASR-SYGIQVAQRAGVPAAVI--------RQASRELERLEAQGAPT 852
Query: 587 KQIQMLYHA 595
Q+ + A
Sbjct: 853 PQLGLFAAA 861
>gi|302670850|ref|YP_003830810.1| DNA mismatch repair protein MutS [Butyrivibrio proteoclasticus
B316]
gi|302395323|gb|ADL34228.1| DNA mismatch repair protein MutS [Butyrivibrio proteoclasticus
B316]
Length = 880
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 180/595 (30%), Positives = 302/595 (50%), Gaps = 69/595 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+++ RNLE++E + K+ +L +L TKT G R LR+ + QPL D
Sbjct: 261 MLLDSSTRRNLELVETMRD-----KQKRGTLLWVLDKTKTAMGARTLRSFIEQPLIDRNE 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R ++ L+ N + ++L + +R++ +K T+ D
Sbjct: 316 ILKRQSAVESLVKNVVSREEIREYLGPI-YDLERLMSKIIYK----TANPRD-------- 362
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ + ++ +P + L D QS + S E+ A + I E+ID+ ++
Sbjct: 363 -----LLAFRNSISMIPAIKTALLDVQS----DAELSALEDNLDA--LRDIYELIDQAIV 411
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P +A ++ IK G D +D R + + + + +E+ + NL++ ++N
Sbjct: 412 EE--PPLA-IKESGIIKEGFDADIDHFREAGTNGKTWLAEMEESEKEKTGIKNLRIKYSN 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGE---- 291
G+ + + + K+P FI+ N +T EL L N ++K E
Sbjct: 469 VFGYSFEVTNS-FKDKVPEYFIRKQTLTNCERYTTPELKELEDTILNAQDKLNNLEYEMF 527
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
C IR I LE +D I+ A+ + LLD+ +A + Y +P E
Sbjct: 528 CKIRDSIALE--IDRIQ-------TTAKAIALLDV----YASLAYVAEKNHYVKPSINEK 574
Query: 352 GPLAIDGGRHPILESI---HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVI 407
G + I GRHP++E + + FI N+ ++ + + I+TGPNM+GKSTY++Q LIV+
Sbjct: 575 GIINIKEGRHPVVERMLDTSDMFISNDTYLDNKKHCISIITGPNMAGKSTYMRQTALIVL 634
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQIG +VPA + I VVDRIFTR+G D+L S STFM EM E A +++N + SL+++
Sbjct: 635 MAQIGSFVPASKADICVVDRIFTRVGASDDLGSGQSTFMVEMNEVANILRNATPNSLLIL 694
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG AIAW+ EH+ + L A T+FA+H L+EL NV ++ +
Sbjct: 695 DEIGRGTSTYDGLAIAWAVTEHISNRKILGAKTLFATHYHELTELEGKMDNVN--NYCIA 752
Query: 525 IRNNRLDFKFQ---LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
++ N D F +K G YG+ +A++AG+P VI+ A+ I + +T ++
Sbjct: 753 VKENGDDIVFLRKIVKGGADK--SYGIQVAKLAGVPDMVIDRAKEIVTELTDNDI 805
>gi|308187917|ref|YP_003932048.1| DNA mismatch repair protein mutS [Pantoea vagans C9-1]
gi|308058427|gb|ADO10599.1| DNA mismatch repair protein mutS [Pantoea vagans C9-1]
Length = 853
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 177/568 (31%), Positives = 292/568 (51%), Gaps = 49/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T T G+R+L+ L PL+D+ IN
Sbjct: 271 MDAATRRNLEITQNLAG---GTDN---TLAAVLDKTVTPMGSRMLKRWLHMPLRDVRIIN 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + EL + ++ L LR+ + +R+L + T++ D+
Sbjct: 325 QRQESIAELQNLSEV---LQPVLRQV-GDLERILARLALR----TARPRDLAR------- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L ++L D ++ L + + E + ++R E++++ V+ +
Sbjct: 370 ------MRHAFQQLPELNQLLADVKAPQLQKLRTQMGE---FTALR----ELLEQAVIES 416
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE+L L LK+ FN
Sbjct: 417 -PPVLIRDGGVIA--PGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGFNGVH 473
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + ++P +++ N EL + ++ G+ + EA
Sbjct: 474 GYYIQV-SRGQSHQVPMHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALSLEKSLYEA 532
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
L D + + L L A L LD++ N A T++ Y RP + + I GGR
Sbjct: 533 LFDQLLPHLEALQLSAAALAELDVLSNLAERAWTLN------YCRPVLQDKAGIKISGGR 586
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + + FI N + ++ M+I+TGPNM GKSTY++Q LI ++A IG +VPA
Sbjct: 587 HPVVEQVLKEPFIANPLSLAPQRRMLIITGPNMGGKSTYMRQAALIALMAWIGSFVPADE 646
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ DG
Sbjct: 647 TLIGPLDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYDG 706
Query: 480 FAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
++AW+C E+L + +KA T+FA+H L+ L V +H V + + F +++
Sbjct: 707 LSLAWACAENLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAVEHGDTIAFMHSVQE 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARS 566
G YGL +A +AG+P VI+ AR+
Sbjct: 767 GAAS-KSYGLAVAALAGVPKEVIKRARN 793
>gi|78189282|ref|YP_379620.1| DNA mismatch repair protein MutS [Chlorobium chlorochromatii CaD3]
gi|90109843|sp|Q3AQZ8.1|MUTS_CHLCH RecName: Full=DNA mismatch repair protein MutS
gi|78171481|gb|ABB28577.1| DNA mismatch repair protein MutS [Chlorobium chlorochromatii CaD3]
Length = 873
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 182/601 (30%), Positives = 295/601 (49%), Gaps = 62/601 (10%)
Query: 1 MNIDATSVRNLEIIEPLH-SALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
M++D + RNLEII + +L G SL ++ T+ G RLLR L +PLK +
Sbjct: 275 MSLDQQTKRNLEIISSMQDGSLSG------SLLQVMDRTRNPMGARLLRRWLQRPLKKLT 328
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
I R + ++EL+ N L +++ L + +R L
Sbjct: 329 NIQERHNAVEELVENRTLRESVAEQLAAI-NDLERSLARIA-----------------TL 370
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+T+ + L +L A+P L +L D + L + ++ K A ++I ID D
Sbjct: 371 RTIPREVRQLGISLAAIPTLQALLSDVTAPRLQALTAALQPLPKLA---EQIESAIDPDA 427
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
A + I+ G + LD R + + + + RE + +LK+ +N
Sbjct: 428 -------GATMRDGGYIRAGYNEELDDLRSIASTAKDRLMQIQQEEREATAISSLKVSYN 480
Query: 240 NRQGFYLSIPHKDIQGKLPSTF--IQVVKHGNNIHCSTL---ELASLNVRNKSAAGECYI 294
G+Y+ I + K+P+ + Q + + L E L+ KS E +
Sbjct: 481 KVFGYYIEISRAN-SDKVPAYYEKKQTLVNAERYTIPALKEYEEKILHAEEKSLLLEAEL 539
Query: 295 RTEICLEALVDAIR-EDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
+C + +A + + L + LC +F YT+P E
Sbjct: 540 FRNLCQQIATEAATVQANAALLAELDALCSFAECAVAF----------DYTKPTMHEGTT 589
Query: 354 LAIDGGRHPILESI---HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
L+I GRHP+LE + +IPN+ + M+I+TGPNM+GKS+YL+Q+ LIV+LAQ
Sbjct: 590 LSITAGRHPVLERLLGAEESYIPNDCHFDDKQTMLIITGPNMAGKSSYLRQIGLIVLLAQ 649
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
G +VPA +++ VVDRIFTR+G DNL S STF+ EM E A ++ N +ERSL+++DE+
Sbjct: 650 AGSFVPAESASLGVVDRIFTRVGASDNLTSGESTFLVEMNEAANILNNATERSLLLLDEI 709
Query: 471 GRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG +IAWS CE+++ ++ A T+FA+H L+EL V + VV R
Sbjct: 710 GRGTSTFDGMSIAWSMCEYIVHTIGAKTLFATHYHELAELEERLKGVVNYNATVVETAER 769
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV-----KRMEINCL 584
+ F ++ G YG+ +A++AG+P+ VI AR I + + K++V K ++N +
Sbjct: 770 VIFLRKIVRGATD-NSYGIEVAKMAGMPNDVISRAREILAGLEKRDVEIPRQKAPKVNTM 828
Query: 585 Q 585
Q
Sbjct: 829 Q 829
>gi|423198295|ref|ZP_17184878.1| DNA mismatch repair protein mutS [Aeromonas hydrophila SSU]
gi|404630419|gb|EKB27098.1| DNA mismatch repair protein mutS [Aeromonas hydrophila SSU]
Length = 860
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 279/570 (48%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L +L +L T T G+RLL+ + QP++D +
Sbjct: 278 MDAATRRNLELTQNL------AGGHDNTLSAVLDCTATPTGSRLLKRWIHQPIRDRVILK 331
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R + EL+ + L+ L LR+ + +RVL + P+ +T
Sbjct: 332 GRQSTIKELI-EQNLYDELGGLLRQV-GDVERVLARLALRSARPRDLTR----------- 378
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ A LP L Q L + + +V + + AS + ++++ V
Sbjct: 379 ---------LRQAFAQLPEL-------QQLLAGSEHEAVQQLRERASTFPELLDLLERAV 422
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ VP V + I+ G + LD R + ++ + + R + LK+ +N
Sbjct: 423 ME--VPPVL-IRDGGVIREGFNTELDELRDLANGATASLARIEERERLLTGINTLKVGYN 479
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GFY+ + + +P+ +I+ NN EL + +A + +
Sbjct: 480 KVHGFYIEVSRANSH-LVPAHYIRRQTLKNNERYIIDELKKYEDKVLTAQAQALALEKRL 538
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAID 357
E L+DA+ + L A L LD++ N A T+ Y P + + I+
Sbjct: 539 YEELLDALLPHLGDLQESAAALAELDVLANLAERAETLD------YRCPTLIDEDQILIE 592
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D FI N I + M+I+TGPNM GKSTY++Q LIV+LA IG +VP
Sbjct: 593 AGRHPVVEQVMTDPFIANPIRLERERRMLIITGPNMGGKSTYMRQTALIVLLAHIGAFVP 652
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + RSL++MDE+GR TS+
Sbjct: 653 ADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLMDEIGRGTST 712
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C E L S + AYT+FA+H L+ L + + +H V + + F
Sbjct: 713 YDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMEGLANVHLDAVEHGDTIAFMHA 772
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++G YGL +A +AG+P +VI+ AR
Sbjct: 773 VQEGAASR-SYGLQVAALAGVPKSVIQQAR 801
>gi|239618478|ref|YP_002941800.1| DNA mismatch repair protein MutS [Kosmotoga olearia TBF 19.5.1]
gi|239507309|gb|ACR80796.1| DNA mismatch repair protein MutS [Kosmotoga olearia TBF 19.5.1]
Length = 823
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 175/579 (30%), Positives = 293/579 (50%), Gaps = 56/579 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +DA+++ NL I+ S ++ SL+ LK T T G R L+ LL PLKD+
Sbjct: 260 MYLDASTIENLSIL---------PSERRGSLYQTLKATVTSMGGRKLKEWLLNPLKDLGK 310
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++ S+ L L ++LR+ F ++++S++ +
Sbjct: 311 IERRLDIVEAFYSDPLLLEELREYLRQ------------AFDIERISSRL------ATGR 352
Query: 121 TLISSIILLKTALDALPLLAKVL--KDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
+ + L+T L LPL+ ++L D S + +I E + RK + I ++
Sbjct: 353 AIPRDLQALRTTLQVLPLIKELLYSNDVLSVIAEDI-------ELFEEERKLLEASISDE 405
Query: 179 VLHARVPFVARTQQCFAIKG---GIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
P A + +G +D L+D+ S + + + R++ + NLK
Sbjct: 406 ------PAAAPGEGKVIRRGYSEELDELMDLLEHS----QDKMKEFELRERQKTGINNLK 455
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +N G+++ + + ++P +I+ N+ T EL + SA+ +
Sbjct: 456 VKYNKVFGYFIEVSKGQV-SRVPDDYIRKQTLVNSERYITPELKEFEDKVLSASERVAVL 514
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E + + V +L LD ++ SFA T++ K YTRP F+ N
Sbjct: 515 ERALYEDICQKLSNSVQRFRKAGGLLAELD-VLQSFA-TVAKKC--GYTRPVFSSNHTSY 570
Query: 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
++ RHP++E DF+PN+I E + I+TGPNMSGKSTY++QV LI ++AQ+G +V
Sbjct: 571 VEAARHPVVEHYVKDFVPNDIQFDEKHSFYILTGPNMSGKSTYIRQVALISLMAQVGSFV 630
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + + V DRIFTR+G D++ STF+ EM ETA ++ +E SL+V+DE+GR TS
Sbjct: 631 PAKRAILPVYDRIFTRIGARDDVAGGKSTFLVEMMETATILSQATEDSLVVLDEVGRGTS 690
Query: 476 SSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IAW+ E++ ++ +TIFA+H L+EL+ +Y + V + + F
Sbjct: 691 TFDGISIAWAVSEYIYEAIGCHTIFATHFTELTELSQMYEGINNKTIEVREIEDGVIFLH 750
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
++ DG H G+ +A++AGLP V++ AR I I K
Sbjct: 751 KVVDGVASQSH-GIDVAKLAGLPDIVLQRAREILKIIVK 788
>gi|94263067|ref|ZP_01286886.1| MutS 1 protein [delta proteobacterium MLMS-1]
gi|93456610|gb|EAT06718.1| MutS 1 protein [delta proteobacterium MLMS-1]
Length = 879
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 185/606 (30%), Positives = 293/606 (48%), Gaps = 58/606 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+I + ++ SL L T+T G R L+ +LL PL ++ IN
Sbjct: 277 LDEATRRNLELIRTISG-----HEREGSLLAALDYTRTPMGARQLKKSLLTPLTAVQAIN 331
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKSQT 121
RLD ++ L+ ++QL L Q L+ + +++ S+V L NA+
Sbjct: 332 RRLDGVETLLYDQQLAGALEQALKA------------VYDLERLNSRVVLGSANAR---- 375
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
+ L+ +L+ LP + ++L + LL + R + + E+ +++ + I +D
Sbjct: 376 ---DLTALRLSLEQLPPIKELLT-PRDGLLGELGRELADLEE---LQQLLAAAIRDDA-- 426
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
++ I+ G LD R D + L + RE + NLK+ +N
Sbjct: 427 -----PVGLKEGNLIRPGYHAELDELRAILSDGKGMIAALEARERERTGIANLKVGYNRV 481
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNK-SAAGECYIRTEICL 300
G+YL + K G++P FI+ N T EL NK S A E + E L
Sbjct: 482 FGYYLEV-SKARSGEVPEDFIRKQTLVNAERYITPELKEFE--NKISGAAEKQLELEYRL 538
Query: 301 EALVDAIREDVSVLTLLAEVL----CLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
RE + + E + L MI + A Y RP + + I
Sbjct: 539 ------FREVRAQVAAAGEQILHNAARLAMI-DLLAALAIAAGRHHYNRPRVDDGDEIII 591
Query: 357 DGGRHPILES--IHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
+ GRHP++E F+PN+I + + ++I+TGPNM+GKST L+Q LIV++AQ+G
Sbjct: 592 NEGRHPVIERNLPPGRFVPNDIELDRQQRELMIITGPNMAGKSTVLRQTALIVLMAQLGS 651
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I VVDRIFTR+G +D+L STFM EM ETA ++ N + +SL+++DE+GR
Sbjct: 652 FVPAAAAHIGVVDRIFTRVGAMDDLRRGQSTFMVEMNETANILNNATPQSLVILDEIGRG 711
Query: 474 TSSSDGFAIAWSCCEHLLSLKAY---TIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
TS+ DG AIAW+ E L T+FA+H L+ELA + H V N+ +
Sbjct: 712 TSTFDGLAIAWAVAEALADKDGQGVRTLFATHYHELTELAATRSRIHNFHIAVREWNDTI 771
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQ 590
F +L G YG+ +A +AG+P TV+ A+ + I + E R + Q
Sbjct: 772 IFLHKLLPGGVSR-SYGIQVAALAGVPPTVVARAKELLHNIEQGEFNRQGQPRIAGDQPA 830
Query: 591 MLYHAA 596
+ +H A
Sbjct: 831 VAHHGA 836
>gi|318054276|gb|ADV35582.1| DNA mismatch repair protein [Pseudomonas aeruginosa]
Length = 855
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 171/586 (29%), Positives = 289/586 (49%), Gaps = 50/586 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE L L G ++ +L ++ +T +RL+ L +PL+D +
Sbjct: 266 LDGASRRNLE----LDINLGG--GRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + F L L++ + +R+L + NA+
Sbjct: 320 ARQESIACLLERYR-FENLQPQLKEI-GDLERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L + + ++ L + ++ + A + + +ID
Sbjct: 363 --DLARLRDALAALPDLQNAMTELEAPHLQALATTIGTYPELAELLAKA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R IK G D LD + + + + +L + + LPNLK+ +N
Sbjct: 415 --PAVIRDGGV--IKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 471 GYFIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ RP F E+ L I+ GRHP
Sbjct: 530 LLERLIGHLAPLQDSASALAELDVLANLAERALNLD----LNRPRFVEHTCLHIEQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ E L +A+T+FA+H L+ L P V +H N R+ F + GP
Sbjct: 706 LAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK 587
YGL +A++AG+P+ VI+ AR + +KR+E L ++
Sbjct: 766 SQ-SYGLAVAQLAGVPAPVIQRAR--------EHLKRLETTSLPHE 802
>gi|294496664|ref|YP_003543157.1| DNA mismatch repair protein MutS [Methanohalophilus mahii DSM 5219]
gi|292667663|gb|ADE37512.1| DNA mismatch repair protein MutS [Methanohalophilus mahii DSM 5219]
Length = 881
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 170/587 (28%), Positives = 301/587 (51%), Gaps = 53/587 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ ++RNLE+++ + + ++ +L TKT G+RLL+ +L+PL ++
Sbjct: 270 MILDSITLRNLEVVKNVRG-----EGRDTTILQVLDETKTPMGSRLLQKWILKPLLNVSH 324
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++EL N L F + L + K+ +R++ + NA+
Sbjct: 325 INKRLDAVEELSDNTLLRFDVRSHL-SYVKDVERLVGRVVYGNS----------NAR--- 370
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK +L A+P L + L+ +LA I + + + + ++ I I E+
Sbjct: 371 ----DLVALKKSLQAIPSLLETLEGEHKAMLARIVQGMKDFREIDTLTDLIERAIVEEP- 425
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P R + IK G LD + + + + K R+ + +LK+ +N
Sbjct: 426 ----PLSVR--EGGLIKPGYSEELDELKEISSNAKSWIASFQQKERDRTGIKSLKVGYNK 479
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
G+YL + +I ++P +I Q + + + L E L+ K A E +
Sbjct: 480 VIGYYLEVTKPNIS-QVPDDYIRKQTMTNAERFYTPQLKDWEGKILSADEKRVALEYELF 538
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E+ + + L +A +L LD++ + ++ + Y RP T++ +
Sbjct: 539 NEV-----ISVVANHSKQLQEMAVLLGELDVLASLAEVAVN----NNYVRPSITDDCRIL 589
Query: 356 IDGGRHPILE-SIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GRHP++E S+ FIPN++ + +++TGPNM+GKSTY++QV LIVI+AQ G
Sbjct: 590 IRQGRHPVVENSVDGGFIPNDVEMDCSDEQFLLITGPNMAGKSTYMRQVALIVIMAQAGS 649
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA +++ +VDRIFTR+G D+L S STFM EM E A ++ N + +SL+++DE+GR
Sbjct: 650 FVPASHASVGIVDRIFTRVGAFDDLASGQSTFMVEMVELANILNNSTAKSLVLLDEIGRG 709
Query: 474 TSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
TS+ DG++IA + E++ + ++FA+H L+E+A VK ++++ ++ +
Sbjct: 710 TSTYDGYSIAKAVVEYIHNKGRQGVRSLFATHYHQLTEIAESLKRVK--NYHIAVKEDGD 767
Query: 531 DFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEV 576
D F K P YG+ +A +AG+P V + A+SI I + V
Sbjct: 768 DLVFLRKIVPGATDKSYGIHVARLAGVPHKVTKRAQSILEDIESESV 814
>gi|427813874|ref|ZP_18980938.1| mismatch repair protein [Bordetella bronchiseptica 1289]
gi|410564874|emb|CCN22422.1| mismatch repair protein [Bordetella bronchiseptica 1289]
Length = 865
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 181/609 (29%), Positives = 283/609 (46%), Gaps = 68/609 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+ + L + + +LF +L +T G+RLLR L PL++ E +
Sbjct: 257 LDPVTRRNLELTQTL------SGEESPTLFSLLDGCRTPMGSRLLRRWLHHPLRENEPVL 310
Query: 63 TRLDCLDELMS----NEQLFF--GLSQFLR----KFPKETDRVLCHFCFK---PKKVTSK 109
R + +++ EQ F GL + LR FP + +R+ + P+++ S
Sbjct: 311 ARQHAIATMLTARLEGEQAFAAAGLLETLRDALNAFP-DIERIAARVALRSVRPRELAS- 368
Query: 110 VLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYA--SI 167
L+ AL ALP L L A + S E A ++
Sbjct: 369 -------------------LRDALVALPALHASL--------APLSGSPRARELAAQLAM 401
Query: 168 RKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYRE 227
IGE++ V A P VA + I G D LD R D + + L + RE
Sbjct: 402 PPDIGELLARAV--ASEPAVA-IRDGGVIAAGFDSELDELRALATDGGDFLVQLEARERE 458
Query: 228 ELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKS 287
+ NL++ FN GFY+ + K K+P + + N T EL + R S
Sbjct: 459 RTGIGNLRVEFNRVHGFYIEV-SKGQTDKVPEDYRRRQTLKNAERYITPELKTWEDRVLS 517
Query: 288 AAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
A R + E L+DA+ + V L+ A L LD + H + P
Sbjct: 518 AQDRSLAREKWLYEQLLDALAQYVRPLSQCASALAELDTLAALAEHARRHD----WVAPE 573
Query: 348 FTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
+ + I+ GRHP++E F PN + + M+++TGPNM GKSTY++QV LI +
Sbjct: 574 LIDGAEIDIEAGRHPVVERAIERFTPNGCRLDQTRRMLLITGPNMGGKSTYMRQVALIAL 633
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
LA+ G +VPA + + +DRIFTR+G D+L STFM EM E A ++ + SL++M
Sbjct: 634 LARTGSFVPATRARVGRLDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAASTPASLVLM 693
Query: 468 DELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
DE+GR TS+ DG A+AW+ LL+ +A T+FA+H L+ L P +H
Sbjct: 694 DEIGRGTSTYDGLALAWAIAYRLLTHNRALTLFATHYFELTRLPAEQPTAANVHLAAAES 753
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQY 586
+ F ++++GP YG+ +A+ AG+P+ VI R +E++R+E
Sbjct: 754 AGGIVFLHEVREGPASR-SYGIQVAQRAGVPAAVI--------RQASRELERLEAQGAPT 804
Query: 587 KQIQMLYHA 595
Q+ + A
Sbjct: 805 PQLGLFAAA 813
>gi|407366139|ref|ZP_11112671.1| DNA mismatch repair protein MutS [Pseudomonas mandelii JR-1]
Length = 859
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 171/573 (29%), Positives = 283/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 323
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + E+L L + + +R+L + NA+
Sbjct: 324 ARQTSITCLLDGYRFEKLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + ++ + + ++ + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPELQVAMTELEAPHIIQLAKTTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + + SA R ++
Sbjct: 472 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + + I G
Sbjct: 531 YEALLEDLIAQLPPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVDEPCMRISQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAHLRAYTLFATHYFELTVLPEAQPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR R+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVIVRAREHLGRL 798
>gi|223939292|ref|ZP_03631172.1| DNA mismatch repair protein MutS [bacterium Ellin514]
gi|223892005|gb|EEF58486.1| DNA mismatch repair protein MutS [bacterium Ellin514]
Length = 876
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 177/599 (29%), Positives = 287/599 (47%), Gaps = 64/599 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +D ++R+LEI+EPLH + K +L+ L T T G R LR L QPL D +
Sbjct: 286 LTLDIITLRHLEILEPLHR----DAAKNATLYGALNRTVTPMGARRLRDWLSQPLADAKA 341
Query: 61 INTRLDCLDELMSN----EQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNA 116
I R + + M N EQ L+Q ++ +R L NA
Sbjct: 342 IGCRQNAVQTWMENVSALEQFRAQLTQV-----RDLERTLGRLS----------AGTGNA 386
Query: 117 KKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID 176
+ + L+ AL+ +P+L +L + N E S+ +G +
Sbjct: 387 R-------DLAALRLALEQVPMLRSILAGLPTSGAGNGLLQEAEEISEPSLLGELGSQVV 439
Query: 177 EDVLHARVPFVART---------QQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYRE 227
E L + +AR ++ I+ G D LD R + + + L E
Sbjct: 440 E--LPDLIDQIARAIADEPPLALKEGGLIRDGFDPALDELRAASRSGKDWIAKLQQDEIE 497
Query: 228 ELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKS 287
+ +LK+ FN+ G+Y+ + ++ K+P +I+ N T EL + +
Sbjct: 498 RTGISSLKVRFNSVFGYYIEVTASNLS-KVPQHYIRKQTIANGERFITPELKEMEGKILG 556
Query: 288 AAG-------ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPV 340
A E ++R + A + I++ S L L ++ SFA T +
Sbjct: 557 AEERSIKLEYELFLRVREVMLARLPEIQQTASALAQLD--------VLGSFAETAR---L 605
Query: 341 DRYTRPHFTENGPLAIDGGRHPILES--IHNDFIPNNIFISEAANMVIVTGPNMSGKSTY 398
Y RP + I GRHP+LE F+ N+ + + + ++TGPNM+GKSTY
Sbjct: 606 YSYCRPQVGTENVVNIRDGRHPVLEQNLSEERFVSNDTQLDQQVQVALITGPNMAGKSTY 665
Query: 399 LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458
++QV L+V+LA G ++PA + + +VDRIFTR+G D+L STFM EM ETA ++ N
Sbjct: 666 IRQVALLVLLAHTGSFIPAAEARVDLVDRIFTRIGASDDLARGQSTFMVEMSETANILNN 725
Query: 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVK 517
+ +SLI++DE+GR TS+ DG ++AWS EHL + + A T+FA+H L+ELA P +K
Sbjct: 726 ATAKSLIILDEIGRGTSTFDGLSLAWSIVEHLHNQVGAKTLFATHYHELTELAGRLPRIK 785
Query: 518 ILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ V N+++ F ++ +G YG+ +A +AG+P VIE A+ I + + E+
Sbjct: 786 NYNVAVREWNDQIVFLRKIIEGGTD-KSYGIQVARLAGVPKAVIERAKEILHNLEESEL 843
>gi|440757516|ref|ZP_20936701.1| DNA mismatch repair protein MutS [Pantoea agglomerans 299R]
gi|436428762|gb|ELP26414.1| DNA mismatch repair protein MutS [Pantoea agglomerans 299R]
Length = 839
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 178/566 (31%), Positives = 287/566 (50%), Gaps = 45/566 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T T G+R+L+ L PL+D IN
Sbjct: 257 MDAATRRNLEITQNLAG---GTDN---TLAAVLDKTVTPMGSRMLKRWLHMPLRDARIIN 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + EL + L L LR+ + +R+L + T++ D+
Sbjct: 311 QRQESIAEL---QNLSDVLQPVLRQV-GDLERILARLALR----TARPRDLAR------- 355
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L ++L D ++ L + + E + ++R E++++ V+ +
Sbjct: 356 ------MRHAFQQLPELNQLLADVEAPQLQKLRVQMGE---FTALR----ELLEQAVIES 402
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE+L L LK+ FN
Sbjct: 403 -PPVLIRDGGVIA--PGYNAELDEWRALADGATDYLDRLEIREREKLGLDTLKVGFNGVH 459
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + ++P +++ N EL + ++ G+ + EA
Sbjct: 460 GYYIQV-SRGQSHQVPMHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALSLEKSLYEA 518
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L D + + L L A L LD++ N S Y RP E + I GGRHP
Sbjct: 519 LFDQLLPHLEALQLSAAALAELDVLSNLAERAWSLN----YCRPVLQEKAGIKISGGRHP 574
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + + FI N + ++ M+I+TGPNM GKSTY++Q LI ++A IG +VPA +
Sbjct: 575 VVEQVLKEPFIANPLSLAPQRRMLIITGPNMGGKSTYMRQAALIALMAWIGSFVPADETL 634
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ DG +
Sbjct: 635 IGPLDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYDGLS 694
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+C E+L + +KA T+FA+H L+ L V +H V + + F +++G
Sbjct: 695 LAWACAENLANRIKAMTLFATHYFELTTLPEKMEGVVNVHLDAVEHGDTIAFMHSVQEGA 754
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARS 566
YGL +A +AG+P VI+ AR+
Sbjct: 755 AS-KSYGLAVAALAGVPKEVIKRARN 779
>gi|406916496|gb|EKD55508.1| hypothetical protein ACD_60C00004G0018 [uncultured bacterium]
Length = 850
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 173/573 (30%), Positives = 292/573 (50%), Gaps = 59/573 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L +A +L +L T + G+RLL+ + +PL+ +
Sbjct: 267 LDAATRRNLELTTNLMNA------PDNTLASVLDYTASAMGSRLLKRWIHRPLRQQSVLV 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTS--KVLDVDNAK 117
R + + L+ +F L L++ + +R+L K P+ + L + A
Sbjct: 321 ERQESIKNLLQGRH-YFKLHAILKQ-TDDVERILARVALKSARPRDLVGLRHTLLLLPAL 378
Query: 118 KSQTLISSIILLKTAL---DALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEV 174
+ + I S + LKT + P+L+ +L+ A V EN I R G V
Sbjct: 379 QQELRIFSALRLKTLMHDISEFPVLSALLQKA-----------VVEN---PPITLRDGGV 424
Query: 175 IDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNL 234
I +D LL ++ + + + L + ++ L
Sbjct: 425 I-----------------AMGYDAELDELLTLSE----NAGKFLMELEEREKKRTGFSTL 463
Query: 235 KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYI 294
K+ +N GFY+ I + P +I+ N T EL + + S+ +
Sbjct: 464 KVGYNRVHGFYIEISRVQAENA-PLDYIRRQTLKNTERFITPELKAFEDKALSSREKALA 522
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
R +I EAL++ I ++S+L A L LD+ VN FA T +T P TE +
Sbjct: 523 REKILYEALLEKIMTELSLLQQSAAALAELDVFVN-FAERADTL---HWTCPVLTEQSEI 578
Query: 355 AIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GGRHP++ES+ + FIPN++ ++E M+++TGPNM GKSTY++Q+ LIV+L+ G
Sbjct: 579 HILGGRHPVIESVLTEPFIPNDVHLTEKERMLMITGPNMGGKSTYMRQIALIVLLSYTGS 638
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I VDRIFTR+G D+L STFM EM ETA ++ + ++ SL+++DE+GR
Sbjct: 639 FVPAREARIGHVDRIFTRIGASDDLAGGRSTFMVEMTETAAILHHATQDSLVLLDEIGRG 698
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++A++ HL + A+++FA+H L+ LA VK +HF + ++++ F
Sbjct: 699 TSTFDGLSLAFATAAHLAKKINAFSLFATHYFELTSLADEISTVKNIHFDAKMHHDKIIF 758
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++GP + YG+ +A++AG+P +VI+ A+
Sbjct: 759 LHTVQEGPAN-QSYGIQVAQLAGVPHSVIQLAK 790
>gi|258623794|ref|ZP_05718751.1| DNA mismatch repair protein MutS [Vibrio mimicus VM603]
gi|258583917|gb|EEW08709.1| DNA mismatch repair protein MutS [Vibrio mimicus VM603]
Length = 888
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 177/573 (30%), Positives = 284/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ ++ GT N +L +L T G+R+L+ + QP++DI T+N
Sbjct: 300 LDAATRRNLELT---YNLAGGTDN---TLADVLDHCATPMGSRMLKRWIHQPMRDIATLN 353
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL L+ L L++ + +R+L + +++ D+ + +
Sbjct: 354 QRLDAIGELKET-ALYAELHPVLKQI-GDIERILARLALR----SARPRDLARLRHAMQQ 407
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSF--LLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ + L T L P LA++ AQ L + R++ EN
Sbjct: 408 LPELHSLLTEL-GQPHLAQLRTHAQPMDELCNLLERAIKENP------------------ 448
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 449 ----PVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 502
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 503 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALAVEKQL- 560
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA + LD++ N S + Y RP + +
Sbjct: 561 ----WEELFDLLLPHLEQLQQLAASIAQLDVLQNLAERAESLE----YCRPTLVKEAGIR 612
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 613 ILGGRHPVVEQVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 672
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 673 VPAESAQIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSHSLVLMDEIGRGT 732
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL P++ +H V + + F
Sbjct: 733 STYDGLSLAWASAEWLAREIGALTLFATHYFELTELPNSLPHLANVHLDAVEHGDSIAFM 792
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G +GL +A +AG+P VI+ AR+
Sbjct: 793 HAVQEGAAS-KSFGLAVAGLAGVPKPVIKNARA 824
>gi|428771150|ref|YP_007162940.1| DNA mismatch repair protein MutS [Cyanobacterium aponinum PCC
10605]
gi|428685429|gb|AFZ54896.1| DNA mismatch repair protein MutS [Cyanobacterium aponinum PCC
10605]
Length = 873
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 179/582 (30%), Positives = 292/582 (50%), Gaps = 56/582 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D+T+ RNLEI + + SL L T T G R LR LLQPL + I
Sbjct: 303 LDSTTRRNLEITSTVRDNTF-----HGSLLWALDRTCTAMGGRALRRWLLQPLLNKRGII 357
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKSQT 121
R D + ELM N L +E R + + +++T +V N K+
Sbjct: 358 ARQDSIAELMDNLPL------------REAIREILKSIYDLERITGRVSAGTANPKELLN 405
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
L S++ L+ L ++ K+ +S + E E+ +K I +++ H
Sbjct: 406 LADSLLKLRE-------LGELAKEGKSPYFQALQDVPSELEELG--KKVIDSIVEFPPQH 456
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
+ + I+ G++ LD R+ E + NL RE + NLK+ +N
Sbjct: 457 VK--------EGGIIRDGVNQQLDEMRKLIDGDKEWLANLEVTERERTGISNLKVGYNKT 508
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYIRT 296
G+Y+S+P + P + + N T EL LN ++ A E I
Sbjct: 509 FGYYISMP-RSKANLAPENYQRKQTLLNEERYITAELKEKENRILNAKDDLAKFEYEIF- 566
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+ L +LV E++ + A+ + +D +++ A + Y RP TE+ + I
Sbjct: 567 -VNLRSLVAEKTEEIRKI---AKAIAAMD-VLSGLAELAVYQD---YNRPEITEDRIIKI 618
Query: 357 DGGRHPILESI--HNDFIPNNIFIS--EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
GRHP++E + F+PN+ + +A +++I+TGPN SGKS YL+QV LI ++AQIG
Sbjct: 619 KNGRHPVVEKLLGFGMFVPNSTVLGTEKAPDLIILTGPNASGKSCYLRQVGLIQLMAQIG 678
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
++PA + + + DRIFTR+G VD++ + STFM EM ETA ++ + +E+SL+++DE+GR
Sbjct: 679 SFIPAESAKLSICDRIFTRVGAVDDIATGQSTFMVEMNETANILNHATEKSLVLLDEIGR 738
Query: 473 ATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
T++ DG +IAW+ E+L + +++ TIFA+H L+ELA+I NV V N +
Sbjct: 739 GTATFDGLSIAWAVAEYLAIEIQSRTIFATHYHELNELASILENVANYQVTVKELENEII 798
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
F ++K G YG+ +AGLP VI+ A+ + S+I K
Sbjct: 799 FLHEVKAGGAD-KSYGIEAGRLAGLPPVVIKRAKQVMSQIEK 839
>gi|189485482|ref|YP_001956423.1| DNA mismatch repair protein MutS [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287441|dbj|BAG13962.1| DNA mismatch repair protein MutS [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 845
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 184/591 (31%), Positives = 299/591 (50%), Gaps = 64/591 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +++NLE++ + S + SL ++ +TKT G R +R L++PL DI
Sbjct: 254 MYLDTAAIKNLELLNSMTSG-----KTENSLLSVMDSTKTPMGARTIRQWLIKPLLDISK 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + + FF + +RK E + + +++T++V K
Sbjct: 309 IKNRQNIVR--------FFIKNPNVRKEIVEKLKTVSDI----ERITARVSSGSANPKDL 356
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
T LK +L + ++ ++K A+ ++ EN A I +I + ++
Sbjct: 357 TA------LKNSLKTINNISGIIKSAEGLGF-----NIPEN---AQITNKISSYLSDE-- 400
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V+ + AIK G++ LD R+ DT + NL K R + NLK+ + +
Sbjct: 401 ----PPVS-LKDGNAIKNGVNAELDELRKMSTDTKAYISNLEAKERAASGINNLKIGYTS 455
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
G+Y+ I K P ++ Q V G L++ + +A E +R E
Sbjct: 456 VFGYYIEI-SKSNAASAPKHYVRKQTVTAGERYITEELKILEEKIL---SAQEKTLRLE- 510
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMI--VNSFAHTISTKPVDRYTRPHFTENGPLAI 356
+L + + +++SV T A++L +I ++ F Y P +E L+I
Sbjct: 511 --NSLFNNLVQEISVFT--ADILKTSQIISEIDIFCGFAENATEYNYVCPKISEGRELSI 566
Query: 357 DGGRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E I + +F N+I E + ++I+TGPNMSGKSTYL+Q LIVI+AQIG +
Sbjct: 567 KDGRHPVVERILKNGEFTANDIAFDENSKIMILTGPNMSGKSTYLRQTALIVIMAQIGSF 626
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VP+ + I +VD+IFTR+G DNL STFM EM ETA ++ ++RSLI++DE+GR T
Sbjct: 627 VPSQSAEIGLVDKIFTRIGAGDNLAGGESTFMVEMSETANILNQYTQRSLIILDEVGRGT 686
Query: 475 SSSDGFAIAWSCCEHLLSLK------AYTIFASHMENLSELATIYPNVKILHFYVVIR-- 526
S+ DG +IAW+ E L K A T+FA+H L+ L+ V +++ V I+
Sbjct: 687 STYDGMSIAWAIIEFLADDKRKANTGAKTLFATHYFELTGLSETLKGV--VNYSVDIKEW 744
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
N + F ++ G YG+ +A++AG+P VIE A I SR+ K V+
Sbjct: 745 NGDVIFLHKIVKGSAD-KSYGIHVAKIAGMPHQVIERAYEILSRLEKNSVE 794
>gi|345004243|ref|YP_004807096.1| DNA mismatch repair protein mutS [halophilic archaeon DL31]
gi|344319869|gb|AEN04723.1| DNA mismatch repair protein mutS [halophilic archaeon DL31]
Length = 896
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 174/594 (29%), Positives = 295/594 (49%), Gaps = 63/594 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+N+DAT+ RNLE++E + G SLF + T + G RLLR L +P +D E
Sbjct: 259 LNLDATTQRNLELVETMQGGASG------SLFDTVDATASSPGRRLLREWLTRPRRDREE 312
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
++ R D + L S + +R+ +ET + K TS D +
Sbjct: 313 LSRRHDAVGALAS--------AALVREQLRETLSAVYDLERLASKATSGSADAGD----- 359
Query: 121 TLISSIILLKTALDALPLLAKVLKD---AQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ +K L LP L + + D A S L A + R E A +R + + E
Sbjct: 360 -----LLSVKQTLATLPALEEAIADTPLADSPLAAVLAR--PNREAAAGLRAELESALRE 412
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVH----NLANKYREELKLPN 233
D P TQ + G D LD + EA+ +LA++ ++E L +
Sbjct: 413 D------PPKTVTQGGI-FRAGYDAELD----DLVERHEALEGYFDSLADREKQEHALSH 461
Query: 234 LKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAG 290
+ + N G+Y+ + + + ++P + V N+ T EL +R + + G
Sbjct: 462 VSVDRNTTDGYYIQV-GRSVADQVPEQYRHVKTLKNSKRFVTDELEEKEREIMRVEESRG 520
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
+ + L + + D +L + + +D + + H + +TRP T+
Sbjct: 521 DLEYE---LFQDLRERVAADAELLQDVGRAVAEVDALASLAHHAANND----WTRPELTD 573
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
L I+ GRHP++E+ +F+PN++++ +IVTGPNMSGKSTY++Q LI +LAQ
Sbjct: 574 GDTLRIEAGRHPVVETT-TEFVPNDLYLDRDRRFLIVTGPNMSGKSTYMRQAALITLLAQ 632
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
G +VPA + I +VD I+TR+G +D L STFM EM+E + ++ + +E SL+++DE+
Sbjct: 633 AGSFVPASSAEIGLVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDEV 692
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR-NN 528
GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA V +H V +
Sbjct: 693 GRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTTLADHLDGVANVHIAVDGDPDA 752
Query: 529 RLDFKF--QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
D F ++DGP YG+ +A++AG+P V++ A + ++ +E K +E
Sbjct: 753 ERDVTFLRTVRDGPTDR-SYGIHVADLAGVPRPVVDRADDVLDKL--REEKAIE 803
>gi|339625122|ref|ZP_08660911.1| DNA mismatch repair protein MutS [Fructobacillus fructosus KCTC
3544]
Length = 901
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 173/582 (29%), Positives = 295/582 (50%), Gaps = 51/582 (8%)
Query: 10 NLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLD 69
NL+++E T K SLF +L TKT G RLL+ L++PLK+++ I R D L
Sbjct: 277 NLDLVENAR-----TKQKAGSLFALLDETKTAMGGRLLKQWLIKPLKNLKDIQARQDVLA 331
Query: 70 ELMSNEQLFF--GLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSII 127
+ FF G Q K+ + +R+ L NAK ++
Sbjct: 332 AFTDD---FFTRGTVQDQLKYVYDLERLAA----------KAALGTLNAK-------DMV 371
Query: 128 LLKTALDALPLLAKVLKDAQSFLLANIYRSVCEN-EKYASIRKRIGEVIDEDVLHARVPF 186
LK +L A+P L L + I +++ E+ + + + I + + ED P
Sbjct: 372 QLKKSLQAVPALQAALMGTSA---DPILQALGEDLDPVSDLADLIEKALVEDP-----PV 423
Query: 187 VARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYL 246
R + IK G D L+D +++ D + + N + R+ +P LK+ +N G+++
Sbjct: 424 SVRDGEL--IKTGYDDLVDSYKQALTDNQDWLANYQEEERQATGIPTLKVKYNKNFGYFI 481
Query: 247 SIPHKDIQGKLP-STFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVD 305
+ ++ GKL + + N +T+ L +A + Y R A+
Sbjct: 482 EVTKANL-GKLEEGRYTRKQTLTNAERFTTVALKEHEDLIFAAQTKRYDREYELFLAIRR 540
Query: 306 AIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID--GGRHPI 363
++E + L LA L +D++ + A + + RP F ++G A+ GRHP+
Sbjct: 541 QVKEQMHRLQHLAHDLAKIDVLA-ALADVAEER---HFVRPRFHQDGSRAVRIVQGRHPV 596
Query: 364 LESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
+ES+ +++ N++ + + +VTGPNM+GKSTY++Q+ +IVILAQ+G +VPA +
Sbjct: 597 VESLLGAGEYVANDVTFPQDQFIQLVTGPNMAGKSTYMRQIAIIVILAQMGAFVPAESAE 656
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ + D+IFTR+G D+L + STFM EM E +QN + +SLI+ DELGR T++ DG A
Sbjct: 657 LPIFDQIFTRIGANDDLVAGRSTFMVEMAEANLALQNATAQSLILFDELGRGTATYDGMA 716
Query: 482 IAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVI-RNNRLDFKFQLKDG 539
+A + E+L L A T+FA+H L+ L+ YP ++ +H + + RL F Q++ G
Sbjct: 717 LAQAIIEYLAKHLHATTVFATHYHELTALSEAYPAIENVHVGAKLSEDGRLHFLHQVQPG 776
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
YG+ +A +AGLPS +++ A I + + K ++E+
Sbjct: 777 AAD-RSYGIQVAALAGLPSPLLKNAEGILAELEKSGAGQVEV 817
>gi|148826651|ref|YP_001291404.1| DNA mismatch repair protein MutS [Haemophilus influenzae PittEE]
gi|166232122|sp|A5UE20.1|MUTS_HAEIE RecName: Full=DNA mismatch repair protein MutS
gi|148716811|gb|ABQ99021.1| DNA mismatch repair protein [Haemophilus influenzae PittEE]
Length = 861
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 177/626 (28%), Positives = 302/626 (48%), Gaps = 60/626 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 267 IQLDAATRRNLELTQNLSG---GTEN---TLASVLDKCVTPMGSRLLKRWIHQPIRDVEK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 321 LKQRQQAIAEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L+TAL+ +P L +++ L ++ + + + + +R
Sbjct: 370 -----------LRTALEQIPALRTIVQQKTPPFLTALFSQIADFSEQCDLLQR------- 411
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
L P + R A G + LD R ++ + NL + RE + LK+
Sbjct: 412 -ALIETPPLLIRDGGVIA--EGYNTELDEWRMLSDGATQYLENLEKRERESTGIDTLKIG 468
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
FN G+Y+ I K P +++ N EL + + G +
Sbjct: 469 FNAVHGYYIQISQGQAH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALEK 527
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLA 355
+ L D + + L L + L LD++VN A T++ Y P F + +
Sbjct: 528 QLYDELFDLLLPHLGALQLASLALSELDVLVNLAERADTLN------YVMPTFCDEVSVK 581
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+ GRHP++E + D FI N + ++ +++I+TGPNM GKSTY++Q LI +LA IG +
Sbjct: 582 IENGRHPVVEQVLKDPFIANPVELNHNRHLLIITGPNMGGKSTYMRQTALITLLAYIGSF 641
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM E A ++ +E+SL+++DE+GR T
Sbjct: 642 VPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEQSLVLIDEIGRGT 701
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+C E L +++ T+FA+H L+ L + +H + NN + F
Sbjct: 702 STYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIVNIHLDALEHNNSIAFM 761
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLY 593
++DG YGL +A +AG+P +VI+ A+ +++ K + +QIQ L
Sbjct: 762 HAVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSHSAD------QQIQALR 814
Query: 594 HAAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A++ L
Sbjct: 815 EANHNQGELLF-EQETDALREAIEKL 839
>gi|402302217|ref|ZP_10821337.1| DNA mismatch repair protein MutS [Selenomonas sp. FOBRC9]
gi|400381204|gb|EJP34008.1| DNA mismatch repair protein MutS [Selenomonas sp. FOBRC9]
Length = 869
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 178/577 (30%), Positives = 290/577 (50%), Gaps = 55/577 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D ++RNLEI L KK +LF +L T+T GTRLL++ L PL
Sbjct: 262 MQLDTYTLRNLEITRSLRDG-----GKKHTLFDVLDFTRTPMGTRLLKSWLEHPLLAPHR 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ RLD + EL+S L L + LR + +R+L + NA+
Sbjct: 317 IDARLDAVAELVSASSLRAKLRELLRSI-YDFERLLTRIETQAA----------NAR--- 362
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRI-GEVIDEDV 179
++ L+ +L ALP + L A+S LL + E + +R+ + ++DE
Sbjct: 363 ----DLVALRVSLAALPGVRAALSGAKSRLLTRAAEGI---ETFDDLRELLMAAIVDEPG 415
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
L R + I+ G LD R D+ + + + R+ + LK+ +N
Sbjct: 416 LSVRDGGI--------IRMGYSDELDELHRFSHDSKSLLQEMEERERDRTGIKTLKIGYN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ + H ++P+ +I+ N T EL + SA E + E
Sbjct: 468 KVFGYYIEVRHSG-SDRVPADYIRKQTLANAERFITEELKEFETKILSAQ-EKIVALEYS 525
Query: 300 LEA-LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRP--HFTENGPLAI 356
L A L D ++E + + +A ++ +D ++ S A ++ RY RP +G + I
Sbjct: 526 LFAELRDRVKERLVPIQNVARMIARVD-VLQSMAEAAASY---RYVRPVIRPASDGEIII 581
Query: 357 DGGRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
GRHP++E + + F+PN+ +S +++TGPNM+GKSTY++QV L+ ++AQ+G
Sbjct: 582 KDGRHPLVERLLERDLFVPNDTHLSHGGTETMLITGPNMAGKSTYMRQVALLTLMAQVGS 641
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I VDRIFTR+G D+L S STFM EM E A +++ + SL+++DE+GR
Sbjct: 642 FVPARSAEIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLVILDEIGRG 701
Query: 474 TSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG +IA + EH+ + A T+FA+H L+E+A N +I ++ + +R
Sbjct: 702 TSTFDGMSIARAVVEHIDTRIHAKTLFATHYHELTEMA----NERIRNYCIAVREKGRGV 757
Query: 533 KF--QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
F ++ G YG+ +A +AGLP V E A I
Sbjct: 758 VFLRRIVAGAAD-KSYGIHVARLAGLPPKVTERAEEI 793
>gi|392980422|ref|YP_006479010.1| DNA mismatch repair protein MutS [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392326355|gb|AFM61308.1| DNA mismatch repair protein MutS [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 853
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 179/568 (31%), Positives = 283/568 (49%), Gaps = 51/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L G N +L +L T T G+R+L+ L P++D +T+
Sbjct: 269 MDAATRRNLEITQNLAG---GVEN---TLASVLDNTVTPMGSRMLKRWLHMPVRDTDTLV 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L + L LR+ + +R+L + T++ D+
Sbjct: 323 CRQQTIAALQDR---YTELQPVLRQV-GDLERILARLALR----TARPRDLAR------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L L D S + + ++ E +A +R ++++ ++ A
Sbjct: 368 ------MRHAFQQLPELRAQLSDVDSAPVQKLRETMGE---FAELR----DLLERAIVDA 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE L L LK+ +N
Sbjct: 415 -PPVLVRDGGVIA--PGYNEELDEWRALADGATDYLDKLEIRERERLGLDTLKVGYNAVH 471
Query: 243 GFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ I Q L P +++ N EL + ++ G+ + +
Sbjct: 472 GYYIQISRG--QSHLVPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYD 529
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L D + ++ L L A L LD++VN A T++ YT P FT+ + I G
Sbjct: 530 ELFDMLMPHLADLQLSAGALAELDVLVNLAERAETLN------YTCPTFTDKPGIRITEG 583
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + N+ FI N + +S M+I+TGPNM GKSTY++Q LI +LA IG YVPA
Sbjct: 584 RHPVVEQVLNEPFIANPLSLSPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQ 643
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ D
Sbjct: 644 KVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTYD 703
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L + +KA T+FA+H L++L V +H + + + F ++
Sbjct: 704 GLSLAWACAESLANKIKAMTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHTVQ 763
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
DG YGL +A +AG+P VI+ AR
Sbjct: 764 DGAAS-KSYGLAVAALAGVPKEVIKRAR 790
>gi|325955087|ref|YP_004238747.1| DNA mismatch repair protein mutS [Weeksella virosa DSM 16922]
gi|323437705|gb|ADX68169.1| DNA mismatch repair protein mutS [Weeksella virosa DSM 16922]
Length = 864
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 179/571 (31%), Positives = 297/571 (52%), Gaps = 59/571 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++RNLE+++P H K SL +L T T G RLL ++ LKD + I
Sbjct: 265 MDPFTIRNLELVQPAHP-------KGVSLLDILNQTTTAMGGRLLNHWMVTILKDRKLIE 317
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RL ++ L+ + L + L++ + +R F K T+K
Sbjct: 318 NRLAFVEYLLKKDALRDEIRNQLKQL-SDVER------FAAKISTAK------------- 357
Query: 123 ISSIILLKTALDALPLLAKVLK---DAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
IS L++ A D+L ++A++ + +LA+ + S E A I I + + ED
Sbjct: 358 ISPKQLMQLA-DSLKIIAEIQSTCIQHINTILAHFFSSDTE---LAQIADFIYKQLSEDP 413
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
H + R I+ G+ LD R + + + ++ E+ +P++K+ FN
Sbjct: 414 PH----LITRGN---VIRKGVSSELDRLREIQYSGKDFLDKMRDREIEKTGIPSIKIAFN 466
Query: 240 NRQGFYLSI--PHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
N G+Y+ + HKD K+PS +I+ N T EL + + A
Sbjct: 467 NVFGYYIEVRNTHKD---KVPSDWIRKQTLVNAERYITEELKTYEQQILGAEERILAIET 523
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
+ L++ + ++ + A+ + LD +V++FA I+ + +Y +P + L I
Sbjct: 524 QLFQDLIEKLIAKINTIQQNAQQIAFLD-VVSTFAE-IAFRF--QYQKPSLNDGFDLDIR 579
Query: 358 GGRHPILESIHN---DFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
GRHP++E + +++PN++ I++ ++++TGPNMSGKS L+Q LIVILAQ+GC
Sbjct: 580 NGRHPVIEQFLDPGTEYVPNDVLINKTDQQILMITGPNMSGKSALLRQTALIVILAQLGC 639
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
YVPA ++I +VDRIFTR+G DN+ S STFM EM ETA ++ N+SERSLI++DE+GR
Sbjct: 640 YVPADSASIGIVDRIFTRVGASDNISSGESTFMVEMNETASILNNISERSLILLDEIGRG 699
Query: 474 TSSSDGFAIAWSCCE--HLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
TS+ DG +IAW+ E H + T+FA+H L+E+A +K + V N++
Sbjct: 700 TSTYDGISIAWAIAEFLHNHPTRPKTLFATHYHELNEMAATMERIKNFNISVKELKNKVL 759
Query: 532 FKFQL-KDGPRHVPHYGLLLAEVAGLPSTVI 561
F +L G H +G+ +A +AG+P +V+
Sbjct: 760 FVRKLVAGGSEH--SFGIHVARMAGMPQSVV 788
>gi|303250832|ref|ZP_07337026.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307253265|ref|ZP_07535139.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307257680|ref|ZP_07539439.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|302650345|gb|EFL80507.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859252|gb|EFM91291.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306863855|gb|EFM95779.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 864
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/568 (30%), Positives = 278/568 (48%), Gaps = 50/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E +
Sbjct: 267 LDAATRRNLELTQNLAG---GTEN---TLAAVLDKCVTPMGSRLLKRWIHQPIRDLEKLK 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R D +D L +++ L Q L + + +R+L + P+ +T
Sbjct: 321 KRQDIIDTLQKEQRI--ELLQPLLQNVGDMERILARVALRSARPRDLTR----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+TAL LP +AK K+ + L A + + +E +A + + I E + +
Sbjct: 368 ---------LRTALAQLPDIAKNAKNLTASLDALVAQIGDFSELHALLERAIIETPPQLI 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V I G + LD R ++ + NL + RE + LK+ FN
Sbjct: 419 RDGGV-----------IAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKIGFN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I K P +++ N EL + + A G +
Sbjct: 468 AVHGYYIQISQGQAH-KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGASLALEKQL 526
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L D + + + L A L LD++ N S Y RP F+ + I GG
Sbjct: 527 YDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLN----YVRPTFSLQRGVNIKGG 582
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + D FI N +F++ ++++VTGPNM GKSTY++Q+ LI ++A IG +VPA
Sbjct: 583 RHPVVEQVLKDPFIANPVFLNAQRHLLVVTGPNMGGKSTYMRQIALISLMAYIGSFVPAD 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM E A ++ +E SL+++DE+GR TS+ D
Sbjct: 643 SAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLVLIDEIGRGTSTYD 702
Query: 479 GFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L ++ T+FA+H L+ L + V +H + + F ++
Sbjct: 703 GLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAREHQDSIVFMHSVQ 762
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+G YGL +A +AG+P VI+ A+
Sbjct: 763 EGAAS-KSYGLAVAALAGVPKQVIQLAK 789
>gi|402572919|ref|YP_006622262.1| DNA mismatch repair protein MutS [Desulfosporosinus meridiei DSM
13257]
gi|402254116|gb|AFQ44391.1| DNA mismatch repair protein MutS [Desulfosporosinus meridiei DSM
13257]
Length = 850
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 172/573 (30%), Positives = 283/573 (49%), Gaps = 46/573 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + RNLE+ E L KK +L +L T T G RLLR + +PL +
Sbjct: 250 MFLDQWTRRNLELTESLRGI-----GKKGTLLSVLDATHTAFGGRLLRHWIDKPLLKQDE 304
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL+ ++EL+++ L L + L + + +R++ + T+ D+ ++
Sbjct: 305 IEGRLNSIEELIADAFLRKDLQKLLSEV-YDLERLMGKVSYG----TANAKDLLLLTQTL 359
Query: 121 TLISSIILLKTALDALPLLAKVLK-DAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ I + T+ A L KV K D + N+ +++ N
Sbjct: 360 ALLPDISTIITSSTAETLKVKVPKLDGLGSFVENLQKAINPNP----------------- 402
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P R IK G +D R E + L N RE + +LK+ +N
Sbjct: 403 -----PLSLREGNL--IKTGYSQEVDELRIISSGGKEWLAQLENAERERTGIRSLKIGYN 455
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I H + +P + + N T EL ++ A +
Sbjct: 456 KVFGYYIEITHANAH-LVPGDYQRKQTLSNAERFITPELKEYELKIIGAEEKLKDLEYEL 514
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
L AL + +R + + +A+VL +D+ V+ ++ + Y RP +G + I G
Sbjct: 515 LLALREQVRANAKKIISVAQVLAEIDVFVSLAEVAVN----NHYVRPQIKTDGQIQITEG 570
Query: 360 RHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
RHP++E + F+PN+ +SE ++ ++TGPNM+GKSTY++QV LIV++A IG +VPA
Sbjct: 571 RHPVVEKMIEQGTFVPNDTLMSENQHLALITGPNMAGKSTYMRQVALIVLMAHIGSFVPA 630
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I +VDRIFTR+G D+L + STFM EM E A +++ S SLI++DE+GR T++
Sbjct: 631 KKANIALVDRIFTRVGASDDLAAGQSTFMVEMHEVAHILKYASRNSLIILDEIGRGTATY 690
Query: 478 DGFAIAWSCCEHLLSLKAY---TIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG +IAW+ EHL+ + T+FA+H L++L +P + LH V R + F
Sbjct: 691 DGLSIAWAVSEHLVQNPQFTPKTLFATHYHELTQLQDNFPGLVNLHVGVKERGEDIVFLH 750
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++ G R YG+ +A +AGLP +I A+++
Sbjct: 751 KILPG-RADRSYGIQVARLAGLPQELIIRAKAL 782
>gi|332140351|ref|YP_004426089.1| DNA mismatch repair protein(MutS) [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550373|gb|AEA97091.1| DNA mismatch repair protein(MutS) [Alteromonas macleodii str. 'Deep
ecotype']
Length = 863
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/572 (29%), Positives = 278/572 (48%), Gaps = 54/572 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ L + ++ +LF ++ TT T G+R+L+ + PL D
Sbjct: 255 VQLDAATRRNLELTHNL------SGGQENTLFSVMDTTTTAMGSRMLQRIIHSPLTDQHE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ +RLD +D ++++ P++ L H + D++
Sbjct: 309 LQSRLDAIDTFINDD-------------PEDIRNALKH-----------IGDIERIMARL 344
Query: 121 TLISS----IILLKTALDALPLLAKVLKDAQSFLLANIYRSVCEN-EKYASIRKRIGEVI 175
L S+ LK A +ALP L+DA + RS+ E Y ++ + I
Sbjct: 345 ALRSARPRDFARLKNAFNALP----DLQDALARFDTGQIRSIGETIGTYPELQALLNSAI 400
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
++ P V R A G + LD R+ ++ + + + RE + LK
Sbjct: 401 IDNP-----PVVIRDGGVIA--EGYNAELDELRKLSQGATDYLDAMEQRERERTGISTLK 453
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +N GF++ I + P+ +I+ N T EL + S+ G
Sbjct: 454 VGYNKVHGFFIEISRAN-SALAPAEYIRRQTLKNTERYITPELKEHEDKVLSSQGAALAL 512
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ EAL D ++ L A L LD++ +S + RP ++ L
Sbjct: 513 EKQLYEALFDNFAPYLNKLIETAAALAKLDVLCCFAERAVSLD----WHRPKLSQECALT 568
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
D GRHP++E++ D FI N + + M+++TGPNM GKSTY++Q LI +LA IG Y
Sbjct: 569 YDAGRHPVVENVMKDPFIANPLQLDTERRMLVITGPNMGGKSTYMRQTALIALLACIGSY 628
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR T
Sbjct: 629 VPAENAHIGKLDRIFTRIGASDDLASGRSTFMVEMTETANILNNATENSLVLMDEIGRGT 688
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+C +L L AYT+FA+H L+EL V +H + + + F
Sbjct: 689 STYDGLSLAWACASYLAKQLNAYTLFATHYFELTELPETQAGVVNVHLNAMEFEDTIRFM 748
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+ +G + +GL +A++AG+P VI+ A+
Sbjct: 749 HTVSEGAAN-KSFGLQVAQLAGVPKPVIKAAQ 779
>gi|94266424|ref|ZP_01290119.1| MutS 1 protein [delta proteobacterium MLMS-1]
gi|93452966|gb|EAT03465.1| MutS 1 protein [delta proteobacterium MLMS-1]
Length = 879
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 186/606 (30%), Positives = 291/606 (48%), Gaps = 58/606 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLE+I + ++ SL L T+T G R L+ +LL PL ++ IN
Sbjct: 277 LDEATRRNLELIRTISG-----HEREGSLLAALDYTRTPMGARQLKKSLLTPLTAVQAIN 331
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKV-LDVDNAKKSQT 121
RLD ++ L+ ++QL L Q L+ + +++ S+V L NA+
Sbjct: 332 RRLDGVETLLYDQQLAGALEQALKA------------VYDLERLNSRVVLGSANAR---- 375
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
+ L+ +L+ LP + ++L + LL + R + E+ +++ + I +D
Sbjct: 376 ---DLTALRLSLEQLPPIKELLT-PRDGLLGELGRELVGLEE---LQQLLAAAIRDDA-- 426
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
++ I+ G LD R D + L + RE + NLK+ +N
Sbjct: 427 -----PVGLKEGNLIRPGYHAELDELRAILSDGKGMIAALEARERERTGIANLKVGYNRV 481
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNK-SAAGECYIRTEICL 300
G+YL + K G++P FI+ N T EL NK S A E + E L
Sbjct: 482 FGYYLEV-SKARSGEVPEDFIRKQTLVNAERYITPELKEFE--NKISGAAEKQLELEYRL 538
Query: 301 EALVDAIREDVSVLTLLAEVL----CLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
RE + + E + L MI + A Y RP + + I
Sbjct: 539 ------FREVRAQVAAAGEQILHNAARLAMI-DLLAALAIAAGRHHYNRPRVDDGDEIII 591
Query: 357 DGGRHPILES--IHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
+ GRHP++E F+PN+I + + ++I+TGPNM+GKST L+Q LIV++AQ+G
Sbjct: 592 NEGRHPVIERNLPPGRFVPNDIELDRQQRELMIITGPNMAGKSTVLRQTALIVLMAQVGS 651
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I VVDRIFTR+G +DNL STFM EM ETA ++ N + +SL+++DE+GR
Sbjct: 652 FVPAAAAHIGVVDRIFTRVGAMDNLRRGQSTFMVEMNETANILNNATPQSLVILDEIGRG 711
Query: 474 TSSSDGFAIAWSCCEHLLSLKAY---TIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530
TS+ DG AIAW+ E L T+FA+H L+ELA + H V N+ +
Sbjct: 712 TSTFDGLAIAWAVAEALADKDGQGVRTLFATHYHELTELAATRSRIHNFHIAVREWNDTI 771
Query: 531 DFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQ 590
F +L G YG+ +A +AG+P TV+ A+ + I + E R + Q
Sbjct: 772 IFLHKLLPGGVSR-SYGIQVAALAGVPPTVVARAKELLHNIEQGEFNRQGQPRIAGDQPA 830
Query: 591 MLYHAA 596
+H A
Sbjct: 831 AAHHGA 836
>gi|410860563|ref|YP_006975797.1| DNA mismatch repair protein MutS [Alteromonas macleodii AltDE1]
gi|410817825|gb|AFV84442.1| DNA mismatch repair protein MutS [Alteromonas macleodii AltDE1]
Length = 863
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/572 (29%), Positives = 278/572 (48%), Gaps = 54/572 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ L + ++ +LF ++ TT T G+R+L+ + PL D
Sbjct: 255 VQLDAATRRNLELTHNL------SGGQENTLFSVMDTTTTAMGSRMLQRIIHSPLTDQHE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ +RLD +D ++++ P++ L H + D++
Sbjct: 309 LQSRLDAIDTFINDD-------------PEDIRNALKH-----------IGDIERIMARL 344
Query: 121 TLISS----IILLKTALDALPLLAKVLKDAQSFLLANIYRSVCEN-EKYASIRKRIGEVI 175
L S+ LK A +ALP L+DA + RS+ E Y ++ + I
Sbjct: 345 ALRSARPRDFARLKNAFNALP----DLQDALARFDTGQIRSIGETIGTYPELQALLNSAI 400
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
++ P V R A G + LD R+ ++ + + + RE + LK
Sbjct: 401 IDNP-----PVVIRDGGVIA--EGYNAELDELRKLSQGATDYLDAMEQRERERTGISTLK 453
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +N GF++ I + P+ +I+ N T EL + S+ G
Sbjct: 454 VGYNKVHGFFIEISRAN-SALAPAEYIRRQTLKNTERYITPELKEHEDKVLSSQGAALAL 512
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ EAL D ++ L A L LD++ +S + RP ++ L
Sbjct: 513 EKQLYEALFDNFAPYLNKLIETAAALAKLDVLCCFAERAVSLD----WHRPKLSQECALT 568
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
D GRHP++E++ D FI N + + M+++TGPNM GKSTY++Q LI +LA IG Y
Sbjct: 569 YDAGRHPVVENVMKDPFIANPLQLDTERRMLVITGPNMGGKSTYMRQTALIALLACIGSY 628
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR T
Sbjct: 629 VPAENAHIGKLDRIFTRIGASDDLASGRSTFMVEMTETANILNNATENSLVLMDEIGRGT 688
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+C +L L AYT+FA+H L+EL V +H + + + F
Sbjct: 689 STYDGLSLAWACASYLAKQLNAYTLFATHYFELTELPETQAGVVNVHLNAMEFEDTIRFM 748
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+ +G + +GL +A++AG+P VI+ A+
Sbjct: 749 HTVSEGAAN-KSFGLQVAQLAGVPKPVIKAAQ 779
>gi|153954199|ref|YP_001394964.1| DNA mismatch repair protein MutS [Clostridium kluyveri DSM 555]
gi|219854807|ref|YP_002471929.1| hypothetical protein CKR_1464 [Clostridium kluyveri NBRC 12016]
gi|189030764|sp|A5N8I5.1|MUTS_CLOK5 RecName: Full=DNA mismatch repair protein MutS
gi|254766624|sp|B9E1Z0.1|MUTS_CLOK1 RecName: Full=DNA mismatch repair protein MutS
gi|146347080|gb|EDK33616.1| MutS [Clostridium kluyveri DSM 555]
gi|219568531|dbj|BAH06515.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 871
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 181/593 (30%), Positives = 314/593 (52%), Gaps = 57/593 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID S RNLEI+E L S KK SL ++ T T G R LR + QPL D
Sbjct: 262 LTIDINSKRNLEIVESLRE-----SKKKGSLLGVIDKTNTSMGGRQLRKWIEQPLIDRNK 316
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++E+++N L + L+ + +R+ K++SK + NAK+
Sbjct: 317 IMERLDSVEEILNNICYHEDLKEALKNI-YDIERL-------AGKISSKSV---NAKELN 365
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+L SSI + +P + +L + ++ LL N+Y+++ E K I ++D+ +L
Sbjct: 366 SLKSSI-------EKIPDIKVILSNFETSLLKNMYKNLDE-------LKDIYMLLDKAIL 411
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V+ ++ IK G D +D + + + + +L + RE K+ +LK+ +N
Sbjct: 412 DN--PSVS-LKEGNLIKEGYDSEIDRLKEAKVKGKDWIASLESSERELTKIKSLKIGYNK 468
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEIC 299
G+Y+ + ++ +I+ N T EL + + A + Y+
Sbjct: 469 VFGYYIEVTKSNLNLVPEHRYIRKQTLSNAERYITPELKEMEDKILGAEEKLIYLEYNAF 528
Query: 300 LEALVDAIREDVSVLT----LLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+E + D + ++V+ + +++EV CL + + + Y +P T + +
Sbjct: 529 VE-VRDKVEKEVTRIQNSARIISEVDCLTSLARAALENN--------YCKPEITLSDRVY 579
Query: 356 IDGGRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
I+ GRHP++E++ +F+ N+ I N ++++TGPNM+GKSTY++QV L+ I+AQIG
Sbjct: 580 IEEGRHPVVENMLSTGEFVSNDTDIDTGENQLLLITGPNMAGKSTYMRQVALVTIMAQIG 639
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA ++I + D+IFTR+G D+L S STFM EM E + +++N + +SLI++DE+GR
Sbjct: 640 SFVPAKSASISICDKIFTRIGASDDLASGKSTFMVEMWEVSNILKNATNKSLILLDEVGR 699
Query: 473 ATSSSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNN 528
TS+ DG +IAWS E++ L+ T+FA+H L++L VK V + NN
Sbjct: 700 GTSTYDGLSIAWSVIEYICRESKLRCKTLFATHYHELTKLEGKIKGVKNYCVSVKEVENN 759
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI-TKKEVKRME 580
+ + ++ G YG+ +A++AGLP V++ AR I + + T+K + ME
Sbjct: 760 IVFLRKIIRGGADQ--SYGIEVAKLAGLPEEVLKRAREILNSLETEKTEESME 810
>gi|315651393|ref|ZP_07904418.1| DNA mismatch repair protein MutS [Lachnoanaerobaculum saburreum DSM
3986]
gi|315486352|gb|EFU76709.1| DNA mismatch repair protein MutS [Lachnoanaerobaculum saburreum DSM
3986]
Length = 880
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 178/587 (30%), Positives = 295/587 (50%), Gaps = 55/587 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D +S RNLE++E + K SL +L T T G R+LR+ L QPL + E
Sbjct: 266 MIVDTSSRRNLELVETMRE-----KKKNGSLLGVLDKTSTAMGARMLRSFLEQPLINRER 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + + EL F R +E R + +++ ++V+ K +
Sbjct: 321 ILNRQEAVAEL------------FERYIDREELREYLSPVYDLERLMARVV----TKNAN 364
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
T ++ L ++ + + +VL + S + I + E I I ++ED
Sbjct: 365 T--RDLLSLSASMKMIAPIKEVLNNCTSGEIVKINEGLDRLEDIIDI---IDRAVNEDS- 418
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + IK G + +D R++ + + +L +E+ + NLK+ +N
Sbjct: 419 ----PLSLKEGNI--IKTGYNVEIDKLRQAKTEGKNWLASLEADEKEKTGIKNLKIKYNK 472
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCST-----LELASLNVRNKSAAGECYIR 295
G+Y + + + +P F++ N +T LE L +K E +
Sbjct: 473 VFGYYFEVTNS-FKDMVPDYFVRKQTLTNAERYTTDKLKELENIILGAEDKLNNLEYEVF 531
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
TE+ D + ++V+ + A+ L +D I S A T++ + YTRP NG +
Sbjct: 532 TEV-----RDTVADNVNRIQSSAKSLAYIDAIC-SLA-TVAYN--NNYTRPQINTNGVID 582
Query: 356 IDGGRHPILESIHND--FIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
I GRHP++ES+ D FI N+ ++ + M I+TGPNM+GKSTY++Q LI ++AQIG
Sbjct: 583 IKDGRHPVVESMLGDDSFIANDTYLDQNKKRMSIITGPNMAGKSTYMRQTALICMMAQIG 642
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA +++ V DRIFTR+G D+L S STFM EM E A +++N + SL+++DE+GR
Sbjct: 643 SFVPASQASLCVCDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRNSLVILDEIGR 702
Query: 473 ATSSSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
TS+ DG AIAW+ EH+ ++K A T+FA+H LSEL P V V R +
Sbjct: 703 GTSTFDGLAIAWAVVEHISNIKLIGAKTLFATHYHELSELEGTLPGVNNYCILVKERGDN 762
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ F ++ G YG+ +A++AG+P +V E A+ + ++ ++
Sbjct: 763 IVFLRKIVTGGAD-KSYGIQVAKLAGVPESVTERAKELIEELSGADI 808
>gi|404371184|ref|ZP_10976492.1| DNA mismatch repair protein mutS [Clostridium sp. 7_2_43FAA]
gi|226912693|gb|EEH97894.1| DNA mismatch repair protein mutS [Clostridium sp. 7_2_43FAA]
Length = 933
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 176/580 (30%), Positives = 305/580 (52%), Gaps = 50/580 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S RNLE+ E L +KK SL +L T T G R +R + +PL
Sbjct: 258 MTIDGNSRRNLELTENLKE-----KSKKGSLIWVLDKTATSMGGRAIRKWIEEPLIIKSE 312
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL +N +F ++ LR KE + +++ K+ + + NAK
Sbjct: 313 IEKRLEGVEELYNN--AYF--NEDLRSLLKE--------IYDIERIVGKISNKNANAK-- 358
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LK +L+ LP + L +A S +L Y+ + E I++ + I +D
Sbjct: 359 -----DLISLKCSLEKLPGIKSHLSEASSNILKEWYKDLDE---LTDIKELLSNSILDD- 409
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P +A ++ IK G + +D R + E + L N+ R+ + +LK+ +N
Sbjct: 410 -----PSIA-LKEGNIIKDGYNEEVDSLRTAKLHGKEWIAALENRERDFTGIRSLKVGYN 463
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A + + ++
Sbjct: 464 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITQELKEMEDKILGAEEKLVSLEYDL 523
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR-YTRPHFTENGPLAID 357
+E + +AI ++++ L A ++ LD + T+S V+ Y +P E+G + I+
Sbjct: 524 FIE-IREAIEKEIARLKQSARIIGNLDAL-----STLSLIAVENDYVKPSINEDGIIEIN 577
Query: 358 GGRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E + +F+ N+ ++ N ++++TGPNM+GKSTY++QV LI ++AQIG +
Sbjct: 578 EGRHPVVEKVIGKGEFVSNDTTLNSNDNRLLLITGPNMAGKSTYMRQVALITLMAQIGSF 637
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I + D+IFTR+G D+L STFM EM E + +++N + +SL+++DE+GR T
Sbjct: 638 VPAKSANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSKSLVLLDEVGRGT 697
Query: 475 SSSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAWS E++ +LK T+FA+H L++L + VK V ++ +
Sbjct: 698 STYDGLSIAWSVIEYISKNNNLKCKTLFATHYHELTKLEGVIEGVKNYSVAVSEIDDNII 757
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
F ++ +G YG+ +A++AGLP+ VI+ A+ I S +
Sbjct: 758 FLRKIVEGGAD-QSYGIEVAKLAGLPTQVIDRAKEILSSL 796
>gi|381402138|ref|ZP_09927017.1| DNA mismatch repair protein MutS [Kingella kingae PYKK081]
gi|380832869|gb|EIC12758.1| DNA mismatch repair protein MutS [Kingella kingae PYKK081]
Length = 850
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/566 (30%), Positives = 279/566 (49%), Gaps = 51/566 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI L + K +LF +L T G+RLL L PL++ + +
Sbjct: 265 LDAATRRNLEITATL------SGKKSPTLFSVLDKCVTHMGSRLLAHWLHHPLRNRDYVQ 318
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + L+ + F +S L+ + +R+ T++ D+ + +
Sbjct: 319 ARLDAVAALLQHN--FADISNSLKNM-ADIERIAARIALG----TARPRDLSALRDALLQ 371
Query: 123 ISSIILLKTAL-DALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
+ +I L ++L D L ++D + L A + S+ + G VI+ D H
Sbjct: 372 VQTIKLPPSSLLDTLAACFPAVRDTATLLQAALLPE-------PSVWLKDGNVIN-DNYH 423
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
A LD R + + +L N+ RE +L LK+ FN
Sbjct: 424 AD--------------------LDELRHLQTHGGDFLRDLENRERERTQLSTLKVEFNRV 463
Query: 242 QGFYLSIPHKDIQGKL-PSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
GFY+ + Q +L PS + + N T EL + + A +
Sbjct: 464 HGFYIELSKN--QAELAPSDYQRRQTLKNAERFITPELKAFEDKFLQAQERALALEKTLF 521
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L+ +++ ++ + A+ + LD++ SFAHT T+ Y P F+E + I GR
Sbjct: 522 EQLISSLQTQLAQIQQTAKAVATLDVLC-SFAHTAQTQ---HYIMPQFSEQAEIHIHNGR 577
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HP++E F PNN ++ A + ++TGPNM GKSTY++QV LI +LA G +VPA +
Sbjct: 578 HPVVEQQVTRFTPNNTALNTAQRLCLLTGPNMGGKSTYMRQVALIALLAHTGSFVPAEHA 637
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
I +D+IFTR+G D+L SN STFM EM ETA+++ + + +SL++MDE+GR TS+ DG
Sbjct: 638 LIGKIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATAQSLVLMDEVGRGTSTFDGL 697
Query: 481 AIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
A+A + EHLL ++ ++FA+H L+ L H + + + F Q++DG
Sbjct: 698 ALAHAIAEHLLQHNQSLSLFATHYFELTRLPEHQSGAFNQHLSALEQGQDIVFLHQIQDG 757
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETAR 565
YG+ +A++AGLP +++AR
Sbjct: 758 AAE-KSYGIAVAKLAGLPPIALKSAR 782
>gi|148359351|ref|YP_001250558.1| DNA mismatch repair protein MutS [Legionella pneumophila str.
Corby]
gi|148281124|gb|ABQ55212.1| DNA mismatch repair protein MutS [Legionella pneumophila str.
Corby]
gi|307610506|emb|CBX00089.1| DNA mismatch repair protein MutS [Legionella pneumophila 130b]
Length = 839
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/566 (30%), Positives = 288/566 (50%), Gaps = 43/566 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA++ ++LE+ E +H + L +L T G+RLL+ L +PLK
Sbjct: 254 LQLDASTQKHLELFENIHGG------GEHCLLSILDKTACAMGSRLLKRWLGKPLKQHAI 307
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I TR + E++ +Q L Q +++ C +++ S++ A KS
Sbjct: 308 IQTRQQAIKEIIFLQQ-DVSLHQLIKQ------------CADVERIVSRI-----ALKSA 349
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LL+T L LP + L++ +S L+ I + + + + +ID
Sbjct: 350 RPRDLVSLLQT-LTLLPAIHDELQENKSLLINEIKKEISPLPLLQQLLETA--IIDNP-- 404
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + R A G D LD R + E + L + + L LKL +N+
Sbjct: 405 ----PMLIRDGGVIA--PGFDEELDELRNLSSNAHETLVKLEQEEKNRTGLSTLKLGYNS 458
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
QGFY+ + Q P F + N T EL + SA + R +
Sbjct: 459 VQGFYIELSKAQAQNA-PPHFHRKQTLKNVERYITPELKLFEDKVLSAQSKALAREKWLY 517
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L++ I++ + L+ LA+ L LD++V S + P+ + I GR
Sbjct: 518 DNLLEEIQQYIPELSDLAKSLAQLDVLVTLAERAQSLN----WNCPNLVPESGIMIQAGR 573
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + + FI N++ + NM+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 574 HPVIEPLLQERFIANDLELKPNQNMLLITGPNMGGKSTYMRQTALIVLLAHIGSFVPADK 633
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
T+ +DRIFTR+G D+L S STFM EM ETA +++ + +SL+++DE+GR TS+ DG
Sbjct: 634 VTLGPLDRIFTRIGASDDLSSGRSTFMVEMTETAQILRQATSQSLVLIDEIGRGTSTYDG 693
Query: 480 FAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
A+A++ C L S +KAYT+F++H L+EL + ++ +H I+ ++ F +++++
Sbjct: 694 MALAYASCAFLASTIKAYTLFSTHYLELTELPKEFSCIRNVHLQASIKTGQIVFLYRVEE 753
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETA 564
G + YGL +AE+AG+P V++ A
Sbjct: 754 GCANR-SYGLEVAELAGIPKEVLKLA 778
>gi|399894488|gb|AFP54330.1| methyl-directed mismatch repair protein, partial [Gilliamella
apicola]
Length = 842
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 170/582 (29%), Positives = 291/582 (50%), Gaps = 55/582 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI E L GT N ++ +L T+T G+R+L+ L P++++ +
Sbjct: 264 LDAATRRNLEITENLSG---GTQN---TVVEILDKTQTPMGSRMLKRWLHSPIRNLTILQ 317
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + EL Q + L K + +R+L T++ D
Sbjct: 318 NRQQAIGEL----QNYINEVNPLLKQIGDLERILARLALH----TARPRDFAR------- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A + LP L +L S L N+ + + + + RI E++++ ++
Sbjct: 363 ------LRDAYNLLPQLQTLLSGLTSPALINLRKKINQFD-------RIAEILNQAIVET 409
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R + + L + RE L + LK+ FN
Sbjct: 410 -PPAIIRDGGVIAT--GYNAELDELRSLADGATNYLEQLEIRERETLGIDTLKVGFNAVH 466
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTL-ELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ I Q L + N+ + EL + ++ G + E
Sbjct: 467 GYYIQISRG--QSHLAPIHYTRRQTLKNVERYIIPELKEYEDKVLTSKGRALALEKQLYE 524
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
L D + D++ + + AE + LD++ N +++ Y +P + + + I GRH
Sbjct: 525 QLFDLLMPDLATMQISAEAIAELDVLTNLAERSLTLN----YQKPTLSTDSGIEIKDGRH 580
Query: 362 PILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
++E + FI N++ + + M+I+TGPNM GKSTY++Q LIV+L+ IG +VPA +
Sbjct: 581 VVIEQVLQTPFIANSLSLLPSRRMLIITGPNMGGKSTYMRQTALIVLLSYIGSFVPASKA 640
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
I +DRIFTR+G D+L S STFM EM ETA +M N +++SL++MDE+GR TS+ DG
Sbjct: 641 VIGPIDRIFTRIGASDDLASGRSTFMVEMTETANIMHNATQQSLVLMDEIGRGTSTYDGL 700
Query: 481 AIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
++AW+C E+L + +K+ T+FA+H L++L V +HF + +N + F ++ +G
Sbjct: 701 SLAWACAENLANEIKSMTLFATHYFELTQLPEHMQGVYNIHFDAIEHDNTVAFIHEVSEG 760
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
+G+ +A +AG+P TV++ A K+++K +EI
Sbjct: 761 AAS-KSFGIAVAGLAGVPKTVLKRA--------KQKLKELEI 793
>gi|424809515|ref|ZP_18234892.1| DNA mismatch repair protein MutS [Vibrio mimicus SX-4]
gi|342323003|gb|EGU18789.1| DNA mismatch repair protein MutS [Vibrio mimicus SX-4]
Length = 845
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 174/571 (30%), Positives = 280/571 (49%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 257 LDAATRRNLELTYNLAG---GTDN---TLADVLDHCATPMGSRMLKRWIHQPMRDTATLN 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL L+ L L++ + +R+L + +
Sbjct: 311 QRLDAIGEL-KEAALYADLHPVLKQI-GDIERILARLALRSARP---------------- 352
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A+ LP L +L + + LA + YA + +++ E +
Sbjct: 353 -RDLARLRHAMQQLPELHTLLTELEQPHLAQL-------RTYAQPMDELCDLL-ERAIKE 403
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 404 NPPVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVH 461
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 462 GFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALAVEKQL--- 517
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + L LA + LD++ N + + Y RP + + I
Sbjct: 518 --WEELFDLLLPHLEQLQQLAASIAQLDVLQNLAERAENLE----YCRPTLVKEAGIRIL 571
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 572 GGRHPVVEQVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 631
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 632 AESAQIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSHSLVLMDEIGRGTST 691
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + A T+FA+H L+EL P++ +H V + + F
Sbjct: 692 YDGLSLAWASAEWLAREIGALTLFATHYFELTELPNSLPHLANVHLDAVEHGDSIAFMHA 751
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G +GL +A +AG+P VI+ AR+
Sbjct: 752 VQEGAAS-KSFGLAVAGLAGVPKPVIKNARA 781
>gi|269140215|ref|YP_003296916.1| DNA mismatch repair protein [Edwardsiella tarda EIB202]
gi|387868733|ref|YP_005700202.1| DNA mismatch repair protein MutS [Edwardsiella tarda FL6-60]
gi|267985876|gb|ACY85705.1| DNA mismatch repair protein [Edwardsiella tarda EIB202]
gi|304560046|gb|ADM42710.1| DNA mismatch repair protein MutS [Edwardsiella tarda FL6-60]
Length = 852
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 169/567 (29%), Positives = 274/567 (48%), Gaps = 49/567 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L ++ +L +L + T G+R+L+ L P++D + +
Sbjct: 269 MDAATRRNLELTQNL------AGGQENTLAAVLDASVTAMGSRMLKRWLHMPIRDRQALQ 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D ++ L+ L L LR+ + +R+L + +
Sbjct: 323 RRQDAIEALLP---LIDELQPLLRQV-GDLERILARLALRSARP---------------- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ ++ A LP L +L + LA + R + + +R ++D
Sbjct: 363 -RDLARMRVAFQQLPTLQTLLGERGGEALAPLARQAGRFDALCELLERA--LVDTP---- 415
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G LD R S+ + L + RE+L L LK+ FN
Sbjct: 416 --PVLVRDGGVIA--SGYHAELDEWRALADGASDYLDRLEIREREKLGLDTLKVGFNAVH 471
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ + + +P +++ N EL + ++ G+ + +
Sbjct: 472 GYYIQV-SRGQSHLVPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYDE 530
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRY--TRPHFTENGPLAIDGGR 360
L D + ++ L A L LD +++ A DRY RP +E + I+ GR
Sbjct: 531 LFDLLLPHLAELQQSATALAELD-VLSGLAER-----ADRYGYVRPQLSERAGINIEEGR 584
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + + FI N + +S A M+++TGPNM GKSTY++Q LIV++A IG +VPA
Sbjct: 585 HPVVEQVLKEPFIANPLTLSSARRMLVITGPNMGGKSTYMRQAALIVLMAHIGSFVPAQR 644
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ I VDRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ DG
Sbjct: 645 AVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDEIGRGTSTYDG 704
Query: 480 FAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
++AW+C E L S +KA T+FA+H L+ L V +H + + F ++D
Sbjct: 705 LSLAWACAESLASRIKAMTLFATHYFELTTLPEKLEGVYNVHLDALEHGETIAFMHSVQD 764
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETAR 565
G YGL +A +AG+P VI+ AR
Sbjct: 765 GAAS-KSYGLAVAALAGVPREVIKRAR 790
>gi|407693422|ref|YP_006818211.1| DNA mismatch repair protein MutS [Actinobacillus suis H91-0380]
gi|407389479|gb|AFU19972.1| DNA mismatch repair protein MutS [Actinobacillus suis H91-0380]
Length = 858
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/568 (30%), Positives = 278/568 (48%), Gaps = 50/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E +
Sbjct: 267 LDAATRRNLELTQNLAG---GTEN---TLAAVLDKCVTPMGSRLLKRWIHQPIRDLEKLK 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R D +D L +++ L Q L + + +R+L + P+ +T
Sbjct: 321 KRQDIIDTLQKEQRI--ELLQPLLQNVGDMERILARVALRSARPRDLTR----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+TAL LP +AK K+ + L A + + +E +A + + I E + +
Sbjct: 368 ---------LRTALAQLPDIAKNAKNLTASLDALVAQIGDFSELHALLERAIIETPPQLI 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V I G + LD R ++ + NL + RE + LK+ FN
Sbjct: 419 RDGGV-----------IAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKIGFN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I K P +++ N EL + + A G +
Sbjct: 468 AVHGYYIQISQGQAH-KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGASLALEKQL 526
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L D + + + L A L LD++ N S Y RP F+ + I GG
Sbjct: 527 YDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLN----YVRPTFSLQRGVNIKGG 582
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + D FI N +F++ ++++VTGPNM GKSTY++Q+ LI ++A IG +VPA
Sbjct: 583 RHPVVEQVLKDPFIANPVFLNAQRHLLVVTGPNMGGKSTYMRQIALISLMAYIGSFVPAD 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM E A ++ +E SL+++DE+GR TS+ D
Sbjct: 643 SAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLVLIDEIGRGTSTYD 702
Query: 479 GFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L ++ T+FA+H L+ L + V +H + + F ++
Sbjct: 703 GLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAREHQDSIVFMHSVQ 762
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+G YGL +A +AG+P VI+ A+
Sbjct: 763 EGAAS-KSYGLAVAALAGVPKQVIQLAK 789
>gi|262172377|ref|ZP_06040055.1| DNA mismatch repair protein MutS [Vibrio mimicus MB-451]
gi|261893453|gb|EEY39439.1| DNA mismatch repair protein MutS [Vibrio mimicus MB-451]
Length = 862
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 177/573 (30%), Positives = 283/573 (49%), Gaps = 57/573 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ ++ GT N +L +L T G+R+L+ + QP++D T+N
Sbjct: 274 LDAATRRNLELT---YNLAGGTDN---TLADVLDHCATPMGSRMLKRWIHQPMRDTATLN 327
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL L+ L L++ + +R+L + +++ D+ + +
Sbjct: 328 QRLDAIGEL-KEAALYAELHPVLKQI-GDIERILARLALR----SARPRDLARLRHAMQQ 381
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSF--LLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ + L T L P LA++ AQ L + R++ EN
Sbjct: 382 LPELHSLLTEL-GQPHLAQLRTHAQPMDELCNLLERAIKENP------------------ 422
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G LD R +E + L + R+ + LK+ +NN
Sbjct: 423 ----PVVIRDGGVIA--DGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNN 476
Query: 241 RQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIR 295
GFY+ + + +P ++ Q +K+ L E LN ++++ A E +
Sbjct: 477 VHGFYIQV-SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALAVEKQL- 534
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L LA L LD++ N S + Y RP + +
Sbjct: 535 ----WEELFDLLLPHLEQLQQLAASLAQLDVLQNLAERAESLE----YCRPTLVKEAGIR 586
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I GGRHP++E + N+ FI N I ++ M+I+TGPNM GKSTY++Q LI ++A IG Y
Sbjct: 587 ILGGRHPVVEQVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSY 646
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR T
Sbjct: 647 VPAESAQIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSHSLVLMDEIGRGT 706
Query: 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + A T+FA+H L+EL P++ +H V + + F
Sbjct: 707 STYDGLSLAWASAEWLAREIGALTLFATHYFELTELPNSLPHLANVHLDAVEHGDSIAFM 766
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G +GL +A +AG+P VI+ AR+
Sbjct: 767 HAVQEGAAS-KSFGLAVAGLAGVPKPVIKNARA 798
>gi|190150933|ref|YP_001969458.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307264287|ref|ZP_07545876.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|238692406|sp|B3H2J9.1|MUTS_ACTP7 RecName: Full=DNA mismatch repair protein MutS
gi|189916064|gb|ACE62316.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306870351|gb|EFN02106.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 864
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/568 (30%), Positives = 278/568 (48%), Gaps = 50/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E +
Sbjct: 267 LDAATRRNLELTQNLAG---GTEN---TLAAVLDKCVTPMGSRLLKRWIHQPIRDLEKLK 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R D +D L +++ L Q L + + +R+L + P+ +T
Sbjct: 321 KRQDIIDTLQKEQRI--ELLQPLLQNVGDMERILARVALRSARPRDLTR----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+TAL LP +AK K+ + L A + + +E +A + + I E + +
Sbjct: 368 ---------LRTALAQLPDIAKNAKNLTASLDALVAQIGDFSELHALLERAIIETPPQLI 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V I G + LD R ++ + NL + RE + LK+ FN
Sbjct: 419 RDGGV-----------IAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKIGFN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I K P +++ N EL + + A G +
Sbjct: 468 AVHGYYIQISQGQAH-KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGASLALEKQL 526
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L D + + + L A L LD++ N S Y RP F+ + I GG
Sbjct: 527 YDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLN----YVRPTFSLQRGVNIKGG 582
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + D FI N +F++ ++++VTGPNM GKSTY++Q+ LI ++A IG +VPA
Sbjct: 583 RHPVVEQVLKDPFIANPVFLNAQRHLLVVTGPNMGGKSTYMRQIALISLMAYIGSFVPAD 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM E A ++ +E SL+++DE+GR TS+ D
Sbjct: 643 SAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLVLIDEIGRGTSTYD 702
Query: 479 GFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L ++ T+FA+H L+ L + V +H + + F ++
Sbjct: 703 GLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAREHQDSIVFMHSVQ 762
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+G YGL +A +AG+P VI+ A+
Sbjct: 763 EGAAS-KSYGLAVAALAGVPKQVIQLAK 789
>gi|322513151|ref|ZP_08066283.1| DNA mismatch repair protein MutS [Actinobacillus ureae ATCC 25976]
gi|322121083|gb|EFX92906.1| DNA mismatch repair protein MutS [Actinobacillus ureae ATCC 25976]
Length = 864
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 173/568 (30%), Positives = 276/568 (48%), Gaps = 50/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E +
Sbjct: 267 LDAATRRNLELTQNLAG---GTEN---TLAAVLDKCVTPMGSRLLKRWIHQPIRDLEKLK 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R D +D L EQ L L+ + +R+L + P+ +T
Sbjct: 321 KRQDIIDTL-QQEQRIEQLQPLLQNV-GDMERILARVALRSARPRDLTR----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+TAL LP +AK K+ + L A + + +E +A + + I E + +
Sbjct: 368 ---------LRTALAQLPDIAKNAKNLTASLDALVAQIGDFSELHALLERAIIETPPQLI 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V I G + LD R ++ + NL + RE + LK+ FN
Sbjct: 419 RDGGV-----------IAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKIGFN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I K P +++ N EL + + A G +
Sbjct: 468 AVHGYYIQISQGQAH-KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGASLALEKQL 526
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L D + + L L A L LD++ N S Y RP F+ + I GG
Sbjct: 527 YDELFDLLMPRLGELQLAAMALSELDVLTNLAERAESLN----YVRPIFSLQRGVNIKGG 582
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + D FI N +F++ ++++VTGPNM GKSTY++Q+ LI ++A IG +VPA
Sbjct: 583 RHPVVEQVLKDPFIANPVFLNAQRHLLVVTGPNMGGKSTYMRQIALISLMAYIGSFVPAD 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM E A ++ +E SL+++DE+GR TS+ D
Sbjct: 643 SAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLVLIDEIGRGTSTYD 702
Query: 479 GFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L ++ T+FA+H L+ L + V +H + + F ++
Sbjct: 703 GLSLAWACAEWLAKRTQSLTLFATHYFELTSLPSQLKGVANVHLDAREHQDSIVFMHSVQ 762
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+G YGL +A +AG+P VI+ A+
Sbjct: 763 EGAAS-KSYGLAVAALAGVPKQVIQLAK 789
>gi|378696905|ref|YP_005178863.1| methyl-directed mismatch repair protein [Haemophilus influenzae
10810]
gi|45645383|gb|AAS73291.1| DNA mismatch repair protein [Haemophilus influenzae]
gi|301169424|emb|CBW29024.1| methyl-directed mismatch repair protein [Haemophilus influenzae
10810]
Length = 861
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 177/627 (28%), Positives = 304/627 (48%), Gaps = 62/627 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 267 IQLDAATRRNLELTQNLSG---GTEN---TLASVLDKCVTPMGSRLLKRWIHQPIRDVEK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 321 LKQRQQAIAEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVID 176
L+TAL+ +P L +++ L ++ + + +E++ +++ + E
Sbjct: 370 -----------LRTALEQIPALRTIVQQKTPPFLTALFSQIADFSEQWDLLQRALIET-- 416
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
P + R A G + LD R ++ + NL + RE + LK+
Sbjct: 417 -------PPLLIRDGGVIA--KGYNAELDEWRMLSDGATQYLENLEKRERESTGIDTLKI 467
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
FN G+Y+ I K P +++ N EL + + G
Sbjct: 468 GFNAVHGYYIQISQGQAH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALE 526
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPL 354
+ + L D + + L L + L LD++VN A T++ Y P F + +
Sbjct: 527 KQLYDELFDLLLPHLGTLQLASLALSELDVLVNLAERADTLN------YVMPTFCDEVSV 580
Query: 355 AIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GRHP++E + D FI N + ++ +++I+TGPNM GKSTY++Q LI +LA IG
Sbjct: 581 KIKNGRHPVVEQVLKDPFIANPVELNHNRHLLIITGPNMGGKSTYMRQTALITLLAYIGS 640
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +DRIFTR+G D+L S STFM EM E A ++ + +SL+++DE+GR
Sbjct: 641 FVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATAQSLVLIDEIGRG 700
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+C E L +++ T+FA+H L+ L + +H + NN + F
Sbjct: 701 TSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIHLDALEHNNTIAF 760
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++DG YGL +A +AG+P +VI+ A+ +++ K E +QIQ L
Sbjct: 761 MHAVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAE------QQIQAL 813
Query: 593 YHAAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A++ L
Sbjct: 814 REANHNQGEL-FFEQETDALREAIEKL 839
>gi|406940195|gb|EKD73024.1| hypothetical protein ACD_45C00478G0001 [uncultured bacterium]
Length = 716
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 167/569 (29%), Positives = 294/569 (51%), Gaps = 51/569 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + +NLE L + L G S+ +L +L T T G+RLL+ + +PL+ ++
Sbjct: 134 LDAATRKNLE----LTTNLAGGSDN--TLASVLDHTVTAMGSRLLKRWIQRPLRQHAVLH 187
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + L+ + + L + L+ + +R+L K +
Sbjct: 188 ARQESIKNLLQDRH-YLALQEILKNV-DDMERILARIALKSARP---------------- 229
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L++ L LP L + L S + A++ + E ++ ++ + + I E+
Sbjct: 230 -RDLVGLRSTLSLLPALQQQLS---SLVAAHLKKLTQEIREFPAMVAVLQKAIVENP--- 282
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVH---NLANKYREELKLPNLKLPFN 239
P R A+ G D LD + A H L + + L LK+ +N
Sbjct: 283 --PMTIRDGGVIAV--GYDAELD---ELLALSEHAGHFLIELEEREKNRTGLSTLKVGYN 335
Query: 240 NRQGFYLSIPHKDIQGK-LPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
GFY+ I IQ + +P+ +I+ N T EL + + S+ + R +I
Sbjct: 336 RVHGFYIEISR--IQAESVPADYIRRQTLKNTERFITPELKAFEDKALSSREKALAREKI 393
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E L++ I +++ L + AE + LD++VN A T +D + P + I G
Sbjct: 394 LYEELLEKIVLELNPLQIAAEAIAELDVLVN-LAERADT--LD-WVCPELVNQSHIHIVG 449
Query: 359 GRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F+PN++++++ M+I+TGPNM GKSTY++Q+ LI +LA +G +VPA
Sbjct: 450 GRHPVIEAVLTQPFVPNDVYLTQQERMLIITGPNMGGKSTYMRQIALIALLAHVGSFVPA 509
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++I V+DRIFTR+G D+L S STFM EM ETA ++ N + +SL+++DE+GR TS+
Sbjct: 510 KEASIGVIDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPQSLVLLDEIGRGTSTF 569
Query: 478 DGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++A++ +L +KA+ +FA+H L+ LA +K +HF +++ F +
Sbjct: 570 DGLSLAFAAATYLAREVKAFCLFATHYFELTTLADEIDTIKNVHFSATEHGDKIVFLHTV 629
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
G + YG+ +A++AG+P VI+ A+
Sbjct: 630 NQGAAN-QSYGIQVAQLAGVPRNVIQLAK 657
>gi|145635559|ref|ZP_01791258.1| DNA mismatch repair protein [Haemophilus influenzae PittAA]
gi|145267222|gb|EDK07227.1| DNA mismatch repair protein [Haemophilus influenzae PittAA]
Length = 861
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 179/627 (28%), Positives = 303/627 (48%), Gaps = 62/627 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E
Sbjct: 267 IQLDAATRRNLELTQNLAG---GTEN---TLSSVLDKCVTPMGSRLLKRWIHQPVRDVEK 320
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+ R + E++ N L L +L + + +R+L + P+ +T
Sbjct: 321 LKQRQQSIAEIL-NFDLVDELQPYL-QLVGDMERILARVALRSARPRDLTR--------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVID 176
L+TAL+ +P L +++ L ++ + + +E+Y +++ + E
Sbjct: 370 -----------LRTALEQIPALRAIVQQKTPPFLTALFSQIADFSEQYDLLQRALIET-- 416
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
P + R A G LD R ++ + NL + RE + LK+
Sbjct: 417 -------PPLLIRDGGVIA--EGYHAELDEWRMLSDGATQYLENLEKRERESTGIDTLKI 467
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT 296
FN G+Y+ I K P +++ N EL + + G
Sbjct: 468 GFNAVHGYYIQISQGQAH-KAPIHYVRRQTLKNAERYIIPELKEYEDKVLKSKGAALALE 526
Query: 297 EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPL 354
+ + L D + + L L + VL LD++VN A T++ Y P F + +
Sbjct: 527 KQLYDELFDLLLPHLGTLQLASLVLSELDVLVNLAERADTLN------YVMPTFCDEVSV 580
Query: 355 AIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC 413
I GRHP++E + D FI N + ++ +++I+TGPNM GKSTY++Q LI +LA IG
Sbjct: 581 KIKNGRHPVVEQVLKDPFIANPVELNHNRHLLIITGPNMGGKSTYMRQTALITLLAYIGS 640
Query: 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRA 473
+VPA + I +DRIFTR+G D+L S STFM EM E A ++ + +SL+++DE+GR
Sbjct: 641 FVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATTQSLVLIDEIGRG 700
Query: 474 TSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
TS+ DG ++AW+C E L +++ T+FA+H L+ L + +H + NN + F
Sbjct: 701 TSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIHLDALEHNNTIAF 760
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++DG YGL +A +AG+P +VI+ A+ +++ K E +QIQ L
Sbjct: 761 MHAVQDGAAS-KSYGLAVAALAGVPQSVIKLAKQKLTQLEKNSSYSAE------QQIQAL 813
Query: 593 YHAAQRLICLKYSNQDEESIRHALQNL 619
A L + Q+ +++R A+ L
Sbjct: 814 REANHNQGEL-FFEQETDALREAIDKL 839
>gi|409407051|ref|ZP_11255502.1| DNA mismatch repair protein [Herbaspirillum sp. GW103]
gi|386432802|gb|EIJ45628.1| DNA mismatch repair protein [Herbaspirillum sp. GW103]
Length = 893
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 163/578 (28%), Positives = 281/578 (48%), Gaps = 34/578 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE+ E + S + +LF L +T G+RLLR L L+D +
Sbjct: 276 IGLDAATRRNLELTETIRSQ--DANALAPTLFSTLDHCRTAMGSRLLRHWLHHALRDQQV 333
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
R ++ LM + GLS L P + +R+ ++++ D+ +
Sbjct: 334 ARARHAAINALMRTDACS-GLSATLAAVP-DIERITTRIAL----LSARPRDLAGLRSGL 387
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ S+ + +DA++ LL ++ + + + +R ++ E
Sbjct: 388 QQLGSL---------RAYVEMCARDAEAPLLGQLHEDLATPAECLDLLERA--IMLEPAA 436
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
R V I G D LD R + + + L + RE + NL++ +N
Sbjct: 437 MVRDGGV--------IARGYDAELDELRGLSENAGQYLLELEARERERTGIANLRVEYNK 488
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
GFY+ + H K+P + + N EL + + SA R +
Sbjct: 489 VHGFYIEVTHGQTD-KVPEDYRRRQTLKNAERYIIPELKAFEDKALSAQERSLSREKFLY 547
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L++ + + L +A L LD +V H + + + P E + ID GR
Sbjct: 548 EQLLNDMGVHIVRLQSIAHALAQLDTLVALADHAVR----NNWCAPQLVEEPCIQIDQGR 603
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HP++E+ FI N+ ++ ++++TGPNM GKST+++QV LI +LA +G +VPA +
Sbjct: 604 HPVVENQIERFIANDCQLAAERKLLLITGPNMGGKSTFMRQVALITLLAYVGSFVPATSA 663
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
I +DRIFTR+G D+L STFM EM E+A ++ N +E SL++MDE+GR TS+ DG
Sbjct: 664 VIGPIDRIFTRIGAADDLAGGRSTFMVEMTESASILNNATEHSLVLMDEVGRGTSTFDGL 723
Query: 481 AIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
A+AW+ HL+ + +++T+FA+H L++L ++P +H V + + F ++ G
Sbjct: 724 ALAWAIARHLIDVTRSFTLFATHYFELTQLPDLHPTAANVHLSAVEHKDSIVFLHAVQSG 783
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
P YGL +A++AG+P+ VI AR S + + ++
Sbjct: 784 PAS-QSYGLQVAQLAGVPAAVIRAARKHLSALESQSMQ 820
>gi|427730896|ref|YP_007077133.1| DNA mismatch repair protein MutS [Nostoc sp. PCC 7524]
gi|427366815|gb|AFY49536.1| DNA mismatch repair protein MutS [Nostoc sp. PCC 7524]
Length = 871
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 181/598 (30%), Positives = 290/598 (48%), Gaps = 71/598 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEI + + + SL L T T G+R LR LLQPL DI+ I
Sbjct: 304 VDQQTRRNLEITQTVRDGTF-----HGSLLWALDRTSTAMGSRSLRRWLLQPLLDIKGIR 358
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLD-VDNAKKSQT 121
R D + EL N L L Q LR+ + +++T + NA+
Sbjct: 359 ARQDTIQELAENTPLRQDLRQLLRQI------------YDLERLTGRTSSGTANAR---- 402
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
+ L +L LP LA+++ DA+S L + +K I + + + I ++
Sbjct: 403 ---DLAALADSLSRLPELARLVADARSPFLKAL-------QKVPPILEELAQNIHAHIVE 452
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
+ P + ++ I+ G++ LD + + + + NL R +P LK+ FN
Sbjct: 453 S--PPI-HLKEGGLIRPGVNPQLDERKATVEADQQWIANLEVDERARTGIPTLKVGFNKT 509
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+SI ++P+ +I+ N T EL R +A + ++ E
Sbjct: 510 FGYYISISRAKAD-QVPNNYIRKQTLTNEERYITPELKEREARILTARDDL---NQLEYE 565
Query: 302 ALVDAIREDVS----VLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
V A+RE+V V+ L+ + D++ + Y RP + I
Sbjct: 566 VFV-ALREEVGTQAEVIRTLSRAVAAADVLCGLAELAVQQG----YCRPEMIPGREIEII 620
Query: 358 GGRHPILES--IHNDFIPNNIFI-------------------SEAANMVIVTGPNMSGKS 396
GRHP++E F+PN+ + S +++I+TGPN SGKS
Sbjct: 621 DGRHPVVEQSLPAGFFVPNSTELGSRELGVGNSETPPLPTPHSPLPDLIILTGPNASGKS 680
Query: 397 TYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVM 456
YL+QV LI ++AQIG +VPA + + + DRIFTR+G VD+L + STFM EM ETA ++
Sbjct: 681 CYLRQVGLIQLMAQIGSFVPAKSAKLGICDRIFTRVGAVDDLATGQSTFMVEMNETANIL 740
Query: 457 QNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPN 515
+ + RSL+++DE+GR T++ DG +IAW+ E+L + + A TIFA+H L+ELA + PN
Sbjct: 741 NHATARSLVLLDEIGRGTATFDGLSIAWAVAEYLATEITARTIFATHYHELNELAGMLPN 800
Query: 516 VKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
V V +++ F Q++ G YG+ +AGLPS VI+ A+ + +I K
Sbjct: 801 VANYQVTVKELPDQIIFLHQVQPGGAD-KSYGIEAGRLAGLPSVVIQRAKQVMGQIEK 857
>gi|421767300|ref|ZP_16204055.1| DNA mismatch repair protein MutS [Lactococcus garvieae DCC43]
gi|407624220|gb|EKF51001.1| DNA mismatch repair protein MutS [Lactococcus garvieae DCC43]
Length = 835
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 179/573 (31%), Positives = 287/573 (50%), Gaps = 56/573 (9%)
Query: 19 SALWGTSNKKR-----SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMS 73
S+L T+NK+ +L+ +L TKT GTRLLR + +PL I R D + +
Sbjct: 252 SSLELTANKREGKKHGTLYWLLDATKTAMGTRLLRNWVDRPLISASQIKKRADIVQLFLD 311
Query: 74 NEQLFFGLSQFLR--KFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKT 131
N FF + + K + +R+ F KVL VD + L+
Sbjct: 312 N---FFERADLIEALKGVYDLERLASRVSF------GKVLPVD-----------YLQLEN 351
Query: 132 ALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQ 191
+L +P + VL Q L + + E + S+ +R IDE RV
Sbjct: 352 SLSNVPGIKNVLLAMQEPALTPLIAKLDEIPELTSLIRR---AIDESA--QRV-----IT 401
Query: 192 QCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHK 251
+ IK G + LD R + + + + L K + + L++ FN + G+Y I
Sbjct: 402 EGGVIKTGYNEQLDKYREALANGTSWIAELEAKEKARTGISTLRIDFNRKDGYYFHITQS 461
Query: 252 DIQGKLPSTFIQVVKHGNNIHCSTLELAS-----LNVRNKSAAGECYIRTEICLEALVDA 306
+ +P F + N+ + ELA L R KS+ E + ++ E
Sbjct: 462 QL-ASVPEHFYRKATLKNSERFGSKELAEIEEIMLEAREKSSILEYELFAQVRTET---- 516
Query: 307 IREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILES 366
+ +S L LA+ + +D + S A TI+ K +Y RP FT+ + I GRHP++ES
Sbjct: 517 -EQYISRLQKLAKAIASIDCL-QSLA-TIAEKY--QYVRPDFTQTRKVNIVKGRHPVVES 571
Query: 367 I--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRV 424
+ +++PN+I + E + ++TGPNMSGKSTY++Q +IVI+AQ+G +VPA + + V
Sbjct: 572 VLGAQEYVPNDIKLPEKTAIQLITGPNMSGKSTYMRQFAMIVIMAQMGSFVPAERAELPV 631
Query: 425 VDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAW 484
D IFTR+G DNL S STFM EM E +Q+ +E SLI+ DELGR T++ DG A+A
Sbjct: 632 FDAIFTRIGASDNLISGESTFMVEMMEANHAIQHATENSLIIFDELGRGTATYDGMALAQ 691
Query: 485 SCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHV 543
S E++ ++ A T+FA+H L++LA ++ +H + + + F ++ +GP
Sbjct: 692 SIIEYIHDNIHAKTLFATHYHELTDLADNLNELENVHVATLEKGGDVTFLHKITEGPAD- 750
Query: 544 PHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
YG+ +A++AGLP ++E A I ++ K V
Sbjct: 751 KSYGIHVAKIAGLPPKLLERADIILQKLENKPV 783
>gi|398943003|ref|ZP_10670641.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM41(2012)]
gi|398159934|gb|EJM48220.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM41(2012)]
Length = 859
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/573 (29%), Positives = 282/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 323
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + E+L L + + +R+L + NA+
Sbjct: 324 ARQTSITCLLDGYRFEKLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + ++ + + ++ + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPELQVAMTELEAPHIIQLAKTTSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + + SA R ++
Sbjct: 472 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 531 YEALLEDLISQLPPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVSEPCMRISQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAHLRAYTLFATHYFELTVLPEAQPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR R+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVIVRAREHLGRL 798
>gi|347755457|ref|YP_004863021.1| DNA mismatch repair protein MutS [Candidatus Chloracidobacterium
thermophilum B]
gi|347587975|gb|AEP12505.1| DNA mismatch repair protein MutS [Candidatus Chloracidobacterium
thermophilum B]
Length = 880
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 173/576 (30%), Positives = 280/576 (48%), Gaps = 52/576 (9%)
Query: 9 RNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDC 67
+NLE+I G S KR +L +L T T G RLLR LL+P ++ I RLD
Sbjct: 286 KNLEVIT-------GASGSKRDALLGVLDDTITNMGARLLRQWLLRPSLELPIIEARLDA 338
Query: 68 LDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKSQTLIS 124
+DEL G Q LR ++ +R++ P+ V +
Sbjct: 339 VDELHRKPIERDGFRQLLRDI-QDIERLVGRLSLNLATPRDVAA---------------- 381
Query: 125 SIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARV 184
L+T+ LP L + L S LL + S+ + A + +R+ E + +
Sbjct: 382 ----LRTSCAHLPALRERLLACTSSLLLTLGESL---DPCADLHQRMAETLSD------A 428
Query: 185 PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGF 244
P V + + I+ G LD R D S A+ + + RE + +LK+ FN G+
Sbjct: 429 PPV-KLDEGGVIRPGFSAELDELRHLRHDASGAMAAIEQRERERTGIGSLKVRFNQVFGY 487
Query: 245 YLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALV 304
Y+ + +++ +P+ + + N +T EL L R + A + L
Sbjct: 488 YIEVTKANLK-YVPADYERKQTIANGERYTTPELKQLEARLRDAEVRLLALETQLFQELR 546
Query: 305 DAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPIL 364
+ L A ++ +LD++ + Y RP L I+ GRHP++
Sbjct: 547 AFLVAHAPRLQTAARIVAVLDVLAALAEVAARRR----YVRPELHAGDELVIEDGRHPVV 602
Query: 365 ESIHNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR 423
E+ F+PN++ ++ + + ++I+TGPNM GKS +L+Q LIV++A G +VPA ++I
Sbjct: 603 EANVERFVPNDVRMNNSTDRLLIITGPNMGGKSVFLRQTGLIVLMAHAGAFVPARRASIP 662
Query: 424 VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIA 483
+VDRIFTR+G DN+ STFM EM ETA ++ + RSL+++DE+GR TS+ DG ++A
Sbjct: 663 LVDRIFTRIGASDNVARGRSTFMVEMTETACILNTATPRSLVLLDEVGRGTSTFDGLSLA 722
Query: 484 WSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
W+ CE+L A T+FA+H L ELA + P V + V +N + F ++ G
Sbjct: 723 WAVCEYLHDDPHHAAKTLFATHYHELVELAQVLPGVCNVQLAVSEQNGDIVFLHRVIPG- 781
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
YG+ + +AGLP++VI AR I + + E+
Sbjct: 782 SASKSYGIEVGRLAGLPASVIARAREILANLEANEL 817
>gi|307262087|ref|ZP_07543741.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306868266|gb|EFN00089.1| DNA mismatch repair protein MutS [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 864
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 172/568 (30%), Positives = 276/568 (48%), Gaps = 50/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L GT N +L +L T G+RLL+ + QP++D+E +
Sbjct: 267 LDAATRRNLELTQNLAG---GTEN---TLAAVLDKCVTPMGSRLLKRWIHQPIRDLEKLK 320
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R D +D L EQ L L+ + +R+L + P+ +T
Sbjct: 321 KRQDIIDTL-QKEQRIEPLQPLLQNV-GDMERILARVALRSARPRDLTR----------- 367
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+TAL LP +AK K+ + L A + + +E +A + + I E + +
Sbjct: 368 ---------LRTALAQLPDIAKNAKNLTASLDALVAQIGDFSELHALLERAIIETPPQLI 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V I G + LD R ++ + NL + RE + LK+ FN
Sbjct: 419 RDGGV-----------IAEGYNAELDEWRELSAGATQYLENLEIREREATGIDTLKIGFN 467
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I K P +++ N EL + + A G +
Sbjct: 468 AVHGYYIQISQGQAH-KAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGASLALEKQL 526
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L D + + + L A L LD++ N S Y RP F+ + I GG
Sbjct: 527 YDELFDLLMPRLGEMQLAAMALSELDVLTNLAERAESLN----YVRPTFSLQRGVNIKGG 582
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + D FI N +F++ ++++VTGPNM GKSTY++Q+ LI ++A IG +VPA
Sbjct: 583 RHPVVEQVLKDPFIANPVFLNAQRHLLVVTGPNMGGKSTYMRQIALISLMAYIGSFVPAD 642
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ I +DRIFTR+G D+L S STFM EM E A ++ +E SL+++DE+GR TS+ D
Sbjct: 643 SAEIGALDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATENSLVLIDEIGRGTSTYD 702
Query: 479 GFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L ++ T+FA+H L+ L + V +H + + F ++
Sbjct: 703 GLSLAWACAEWLAKKTQSLTLFATHYFELTSLPSQLKGVANVHLDAREHQDSIVFMHSVQ 762
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+G YGL +A +AG+P VI+ A+
Sbjct: 763 EGAAS-KSYGLAVAALAGVPKQVIQLAK 789
>gi|345300600|ref|YP_004829958.1| DNA mismatch repair protein mutS [Enterobacter asburiae LF7a]
gi|345094537|gb|AEN66173.1| DNA mismatch repair protein mutS [Enterobacter asburiae LF7a]
Length = 853
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 177/567 (31%), Positives = 283/567 (49%), Gaps = 49/567 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L G N +L +L +T T G+R+L+ L P+++ ET+
Sbjct: 269 MDAATRRNLEITQNLAG---GVEN---TLASVLDSTVTPMGSRMLKRWLHMPIRNTETLI 322
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L F L LR+ + +R+L + T++ D+
Sbjct: 323 GRQQTIAALQDR---FSELQPVLRQI-GDLERILARLALR----TARPRDLAR------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ A LP L L + S + + ++ E + +R E+++ ++ A
Sbjct: 368 ------MRHAFQQLPELRAQLAEVNSTPVQKLRETMGE---FTELR----ELLERAIIDA 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + R A G + LD R ++ + L + RE L L LK+ +N
Sbjct: 415 -PPVLVRDGGVIA--PGYNEELDEWRALADGATDYLDKLEIRERERLGLDTLKVGYNAVH 471
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I + P +++ N EL + ++ G+ + +
Sbjct: 472 GYYIQI-SRGQSHMAPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYDE 530
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
L D + ++ L L A L LD++VN A T++ YT P FT+ + I GR
Sbjct: 531 LFDMLMPHLADLQLSAGALAELDVLVNLAERADTLN------YTCPTFTDKPGIRITEGR 584
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + N+ FI N + +S M+I+TGPNM GKSTY++Q LI +LA IG YVPA
Sbjct: 585 HPVVEQVLNEPFIANPLSLSPQRRMLIITGPNMGGKSTYMRQTALIALLAHIGSYVPAQK 644
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
I +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+GR TS+ DG
Sbjct: 645 VEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTYDG 704
Query: 480 FAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
++AW+C E+L + +KA T+FA+H L++L V +H + + + F ++D
Sbjct: 705 LSLAWACAENLANKIKAMTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHTVQD 764
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETAR 565
G YGL +A +AG+P VI+ AR
Sbjct: 765 GAAS-KSYGLAVAALAGVPKEVIKRAR 790
>gi|334703000|ref|ZP_08518866.1| DNA mismatch repair protein MutS [Aeromonas caviae Ae398]
Length = 839
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 173/570 (30%), Positives = 283/570 (49%), Gaps = 53/570 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + L G N +L +L T T G+RLL+ + QP++D +
Sbjct: 257 MDAATRRNLELTQNLAG---GHDN---TLSAVLDCTATPMGSRLLKRWIHQPIRDRVILK 310
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAKKS 119
R + EL+ + L+ L LR+ + +RVL + P+ +T
Sbjct: 311 GRQSTIKELI-EQNLYDELGGLLRQV-GDVERVLARLALRSARPRDLTR----------- 357
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ A LP L ++L +++ + +V + + AS + ++++ V
Sbjct: 358 ---------LRQAFAQLPELQRLLAESE-------HEAVQQLRERASTFPELFDLLERAV 401
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
+ VP V + I+ G + LD R + ++ + + + + LK+ +N
Sbjct: 402 ME--VPPVL-IRDGGVIREGFNQELDELRDLANGATASLARIEEREKALTGINTLKVGYN 458
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GFY+ + + +P+ +I+ NN EL + +A + +
Sbjct: 459 KVHGFYIEVSRANSH-LVPAHYIRRQTLKNNERYIIDELKKYEDKVLTAQAQALALEKRL 517
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAID 357
E L+DA+ + L A L LD++ N A T+ Y P + + I+
Sbjct: 518 YEELLDALLPHLGDLQESAAALAELDVLANLAERAETLD------YRCPTLIDEDQILIE 571
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D FI N I + M+I+TGPNM GKSTY++Q LIV+LA IG +VP
Sbjct: 572 AGRHPVVEQVMTDPFIANPIRLERERRMLIITGPNMGGKSTYMRQTALIVLLAHIGAFVP 631
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N + RSL++MDE+GR TS+
Sbjct: 632 ADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATARSLVLMDEIGRGTST 691
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C E L S + AYT+FA+H L+ L + + +H V + + F
Sbjct: 692 YDGLSLAWACAEQLASKIGAYTLFATHYFELTRLPELMSGLANVHLDAVEHGDTIAFMHA 751
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETAR 565
+++G YGL +A +AG+P +VI AR
Sbjct: 752 VQEGAASR-SYGLQVAALAGVPKSVIHQAR 780
>gi|289580016|ref|YP_003478482.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099]
gi|448281256|ref|ZP_21472563.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099]
gi|289529569|gb|ADD03920.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099]
gi|445579186|gb|ELY33582.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099]
Length = 917
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 173/583 (29%), Positives = 293/583 (50%), Gaps = 65/583 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA ++R+LE+ EP A+ G + +L +L T G R LR L +PL + I
Sbjct: 314 LDAVALRSLELFEP--RAVNGRDDA--TLVGVLDETACALGGRTLRDWLRRPLLESHRIE 369
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++EL + Q + LR + +++ ++ + +
Sbjct: 370 ARLDAVEELTGSVQTREHCHELLRD------------VYDLERLIGRI------SRERAN 411
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ L +P + L DA L +++ + + A +R E+ID+ V+
Sbjct: 412 ARDLRSLRDTLAVVPEIRSQLADADCDRLRDLHEDL---DPLADVR----ELIDDAVVTD 464
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P + T+ I G D LD R + D + + +L + RE + +LK+ +N+
Sbjct: 465 --PPIEITEGGI-IAEGYDSDLDDLRGTARDGKQWIDDLEARERERTGIDSLKVGYNSVH 521
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLN---VRNKSAAGE------CY 293
G+Y+ + + ++ +P + + N+ T EL V + A E C
Sbjct: 522 GYYIEVTNPNLDA-VPENYQRRQTLKNSERFVTPELKEREDEIVGAEERADEREYELFCA 580
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE--- 350
+R++I ++V + LA+ L LD +V S A T++ + Y RP +
Sbjct: 581 VRSDIG---------DEVERVQGLADALATLDALV-SLA-TVAAQY--DYCRPEILDPDA 627
Query: 351 ---NGPLAID--GGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405
+G + ID GGRHP++E F+PN + ++TGPNMSGKSTY++QV +
Sbjct: 628 DHIDGGVQIDITGGRHPVVERTQESFVPNGAQFDSEQRLAVITGPNMSGKSTYMRQVAQL 687
Query: 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLI 465
V+LAQ+G +VPA + + V+R+FTR+G D++ STFM EM E A ++++ ERSL+
Sbjct: 688 VLLAQVGSFVPAESARLTPVERVFTRVGASDDIAGGRSTFMVEMDELATILRDADERSLV 747
Query: 466 VMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVV 524
++DE+GR TS++DG AIA + EHL ++ A T+FA+H L+ELA PN LHF V
Sbjct: 748 LLDEVGRGTSTADGLAIAQAITEHLHDAVGATTLFATHHHPLTELAEELPNAFTLHFEVE 807
Query: 525 IRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+ + F +++ G YG+ +A AG+P V++ +R +
Sbjct: 808 QTDGEVVFHHEIEPGA-ATGSYGVEVATAAGVPEAVVDRSREL 849
>gi|88608613|ref|YP_506224.1| DNA mismatch repair protein MutS [Neorickettsia sennetsu str.
Miyayama]
gi|88600782|gb|ABD46250.1| DNA mismatch repair protein MutS [Neorickettsia sennetsu str.
Miyayama]
Length = 815
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 184/582 (31%), Positives = 296/582 (50%), Gaps = 68/582 (11%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA+++R LE+IE T +K SL ++ T T GG RLL++ ++ PL +E
Sbjct: 268 LALDASTIRGLELIES------QTPGEKNSLLQVIDQTCTAGGKRLLKSYIVSPLISVEE 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R D ++ FF + + LRK KV +++ ++ +A+++
Sbjct: 322 IQARQDKVE--------FFFIQEELRK-----------------KVRTELANIPDAERA- 355
Query: 121 TLISSIILLK-TALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+S I L + +D L + + + S LLA + + EN SI + D+++
Sbjct: 356 --LSRIALNRGEPIDCLAVHSCM---RSSLLLAECFSAFLENGYIRSIYDKCAP--DDEL 408
Query: 180 LHA-RVPFVARTQQCFAIKGGIDG----------LLDIARRSFCDTSEAVHNLANKYREE 228
+ R F+ + + +DG LL++ R S + +++L N Y+
Sbjct: 409 METLRTAFLPTSNR------KVDGPFLDPTHHPKLLELNRLS-TNADVVINDLLNTYKRN 461
Query: 229 LKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSA 288
+ +LKL NN G+Y+ +P K FI NNI +TLEL +L + +
Sbjct: 462 TGINSLKLGKNNLIGYYVEVP-KSAPLLDSEVFIHRQSLLNNIRYTTLELQNLEAQ-IAK 519
Query: 289 AGECYIRTEICL-EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347
A E Y + E+ L L I L + + LD+I SFA + +Y RP
Sbjct: 520 ANENYRKLELELFRELCGKILASEGPLKEMIAAIAELDVIA-SFAEIAVQR---KYVRPQ 575
Query: 348 FTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407
+ L I GGRHP +E + N F+PN++ + A + ++TGPNM+GKSTYL+Q LI I
Sbjct: 576 VDNSNELRISGGRHPFVEQV-NAFVPNDLAFTSAERVCVLTGPNMAGKSTYLRQNALITI 634
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
LAQ+G +VPA + I VVDR+F+R+G DN+ STFM EM ETA ++ N + RSL+++
Sbjct: 635 LAQMGSFVPADSAHIGVVDRVFSRIGASDNIAMGKSTFMVEMMETANIVNNATCRSLVIL 694
Query: 468 DELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIR 526
DE+GR TS+ DG +IA + E+L S+ TIFA+H L +L + P +K V
Sbjct: 695 DEVGRGTSTLDGISIAQAVLEYLHDSVNCKTIFATHYNELCDLESKLPRMKCYSIEVKRW 754
Query: 527 NNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSIT 568
+ + +++ G R YG+ A ++G+P +I A I
Sbjct: 755 RDEVLLMYKIVPG-RGDNSYGIHTAMLSGIPEAIIRRATEIA 795
>gi|398893156|ref|ZP_10645974.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM55]
gi|398184629|gb|EJM72071.1| DNA mismatch repair protein MutS [Pseudomonas sp. GM55]
Length = 859
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 173/573 (30%), Positives = 281/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI- 61
+D S RNLE L + L G + +L ++ +T G+RLL L +PL+D+ +
Sbjct: 270 LDGASRRNLE----LDTNLAG--GRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLL 323
Query: 62 --NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T + CL + E+L L + + +R+L + NA+
Sbjct: 324 ARQTSITCLLDGYRFERLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + ++ L + + A++ ++ +ID
Sbjct: 367 -----DLARLRDALGALPELQVAMTELEAPHLQQLATITSTYPELAALLEKA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L +LK+ +N
Sbjct: 419 -----PAVIRDGGV--LKNGYDSELDELQSLSENAGQFLIDLEAREKARTGLSHLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + + SA R ++
Sbjct: 472 RIHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + + L A L LD++ N ++ P F + I G
Sbjct: 531 YEALLEDLIAQLPPLQDTAGALAELDVLSNLAERALNLD----LNCPRFVSEPCMRISQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + + M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +ERSL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAERLAHLRAYTLFATHYFELTVLPEAQPLVANVHLNATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+PS VI AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPSEVITRAREHLSRL 798
>gi|313127385|ref|YP_004037655.1| DNA mismatch repair protein muts [Halogeometricum borinquense DSM
11551]
gi|448288141|ref|ZP_21479342.1| DNA mismatch repair protein MutS [Halogeometricum borinquense DSM
11551]
gi|312293750|gb|ADQ68210.1| DNA mismatch repair protein MutS [Halogeometricum borinquense DSM
11551]
gi|445570180|gb|ELY24746.1| DNA mismatch repair protein MutS [Halogeometricum borinquense DSM
11551]
Length = 923
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 168/607 (27%), Positives = 300/607 (49%), Gaps = 65/607 (10%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DAT+ RNLE+ E +H GT L + T T G RLLR L +P +D
Sbjct: 259 LELDATTQRNLELTETMHGETDGT------LVDAIDHTVTSPGGRLLREWLTRPRRDRAE 312
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+ RLD + L +E R + +++ ++
Sbjct: 313 LERRLDAVTALARE------------ALSRERVRDTLDGVYDLERLAARA------ASGS 354
Query: 121 TLISSIILLKTALDALPLLAKVLKDA---QSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
S ++ ++ L LP +A+ ++++ +S L + R + E A++ + + + +
Sbjct: 355 AGASDLLSVRDTLAVLPAVAEAIEESPLSESPLSDVVARP--DREAAAALHDELADALAD 412
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
D P R F K G D LD S + + LA++ + + L ++ +
Sbjct: 413 DP-----PKTVRQGGLF--KHGYDDELDELIDSHEEAQRWIDTLADREKRQHSLSHVTVD 465
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNN---IHCSTLELASLNVRNKSAAGE--- 291
N G+Y+ + K + ++P + ++ N+ + E +R + + GE
Sbjct: 466 RNKTDGYYIQV-GKSVADQVPEHYREIKTLKNSKRFVTEELEEREREILRLEESRGELEY 524
Query: 292 ---CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHF 348
C +R + A +L + VL +D++ + H +TRP
Sbjct: 525 ELFCELRERVAAHA---------ELLQDVGRVLAEIDVLSSLATHAAGND----WTRPTL 571
Query: 349 TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
T+ GP+ I+ GRHP++E +F+PN++++ + +IVTGPNMSGKSTY++Q LIV+L
Sbjct: 572 TDPGPVRIEAGRHPVVERT-TEFVPNDLYMDDERGFLIVTGPNMSGKSTYMRQAALIVLL 630
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ+G +VPA + I VVD I+TR+G +D L STFM EM+E + ++ + +E SL+++D
Sbjct: 631 AQVGSFVPARSAEIGVVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILD 690
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR T++ DG +IAW+ E+L + ++A T+FA+H L+ LA V +H R+
Sbjct: 691 EVGRGTATYDGISIAWAATEYLHNEVRAKTLFATHYHELTSLADHLDRVANVHVAAEERD 750
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQY- 586
+ F ++DGP YG+ +A++AG+P V+ A ++ ++ +E K +E +
Sbjct: 751 GDVTFLRTVQDGPTDR-SYGIHVADLAGVPKPVVSRADNVLEKL--REEKAIEAKGGESD 807
Query: 587 KQIQMLY 593
K +Q ++
Sbjct: 808 KPVQAVF 814
>gi|397667533|ref|YP_006509070.1| methyl-directed mismatch repair protein [Legionella pneumophila
subsp. pneumophila]
gi|115299209|sp|Q5ZUJ3.2|MUTS_LEGPH RecName: Full=DNA mismatch repair protein MutS
gi|189083211|sp|A5ICW2.2|MUTS_LEGPC RecName: Full=DNA mismatch repair protein MutS
gi|395130944|emb|CCD09193.1| methyl-directed mismatch repair protein [Legionella pneumophila
subsp. pneumophila]
Length = 846
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/566 (30%), Positives = 288/566 (50%), Gaps = 43/566 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA++ ++LE+ E +H + L +L T G+RLL+ L +PLK
Sbjct: 261 LQLDASTQKHLELFENIHGG------GEHCLLSILDKTACAMGSRLLKRWLGKPLKQHAI 314
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I TR + E++ +Q L Q +++ C +++ S++ A KS
Sbjct: 315 IQTRQQAIKEIIFLQQ-DVSLHQLIKQ------------CADVERIVSRI-----ALKSA 356
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ LL+T L LP + L++ +S L+ I + + + + +ID
Sbjct: 357 RPRDLVSLLQT-LTLLPAIHDELQENKSLLINEIKKEISPLPLLQQLLETA--IIDNP-- 411
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P + R A G D LD R + E + L + + L LKL +N+
Sbjct: 412 ----PMLIRDGGVIA--PGFDEELDELRNLSSNAHETLVKLEQEEKNRTGLSTLKLGYNS 465
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
QGFY+ + Q P F + N T EL + SA + R +
Sbjct: 466 VQGFYIELSKAQAQNA-PPHFHRKQTLKNVERYITPELKLFEDKVLSAQSKALAREKWLY 524
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L++ I++ + L+ LA+ L LD++V S + P+ + I GR
Sbjct: 525 DNLLEEIQQYIPELSDLAKSLAQLDVLVTLAERAQSLN----WNCPNLVPESGIMIQAGR 580
Query: 361 HPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
HP++E + + FI N++ + NM+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 581 HPVIEPLLQERFIANDLELKPNQNMLLITGPNMGGKSTYMRQTALIVLLAHIGSFVPADK 640
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
T+ +DRIFTR+G D+L S STFM EM ETA +++ + +SL+++DE+GR TS+ DG
Sbjct: 641 VTLGPLDRIFTRIGASDDLSSGRSTFMVEMTETAQILRQATSQSLVLIDEIGRGTSTYDG 700
Query: 480 FAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
A+A++ C L S +KAYT+F++H L+EL + ++ +H I+ ++ F +++++
Sbjct: 701 MALAYASCAFLASTIKAYTLFSTHYLELTELPKEFSCIRNVHLQASIKTGQIVFLYRVEE 760
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETA 564
G + YGL +AE+AG+P V++ A
Sbjct: 761 GCANR-SYGLEVAELAGIPKEVLKLA 785
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,723,398,586
Number of Sequences: 23463169
Number of extensions: 338139441
Number of successful extensions: 981662
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9154
Number of HSP's successfully gapped in prelim test: 1113
Number of HSP's that attempted gapping in prelim test: 944122
Number of HSP's gapped (non-prelim): 14518
length of query: 628
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 479
effective length of database: 8,863,183,186
effective search space: 4245464746094
effective search space used: 4245464746094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)