BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006859
(628 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4JP48|MSH4_ARATH DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana GN=MSH4
PE=2 SV=1
Length = 792
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/628 (81%), Positives = 574/628 (91%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
MNIDATSV NLE+I+P H+AL GTSNKKRSLF M KTTKT GGTRLLRANLLQPLKDIET
Sbjct: 165 MNIDATSVENLELIDPFHNALLGTSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKDIET 224
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
INTRLDCLDELMSNEQLFFGLSQ LRKFPKETDRVLCHFCFKPKKVT V+ +N +KSQ
Sbjct: 225 INTRLDCLDELMSNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTEAVIGFENTRKSQ 284
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+ISSIILLKTALDALP+LAKVLKDA+ FLLAN+Y+SVCEN++YASIRK+IGEVID+DVL
Sbjct: 285 NMISSIILLKTALDALPILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVL 344
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
HARVPFVARTQQCFA+K GIDG LDIARR+FCDTSEA+HNLA+KYREE LPNLKLPFNN
Sbjct: 345 HARVPFVARTQQCFALKAGIDGFLDIARRTFCDTSEAIHNLASKYREEFNLPNLKLPFNN 404
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
RQGF+ IP K++QGKLP+ F QVVKHG NIHCS+LELASLNVRNKSAAGEC+IRTE CL
Sbjct: 405 RQGFFFRIPQKEVQGKLPNKFTQVVKHGKNIHCSSLELASLNVRNKSAAGECFIRTETCL 464
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
EAL+DAIRED+S LTLLAEVLCLLDMIVNSFAHTISTKPVDRY+RP T++GPLAID GR
Sbjct: 465 EALMDAIREDISALTLLAEVLCLLDMIVNSFAHTISTKPVDRYSRPELTDSGPLAIDAGR 524
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HPILESIHNDF+ N+IF+SEA NM++V GPNMSGKSTYLQQVCL+VILAQIGCYVPA F+
Sbjct: 525 HPILESIHNDFVSNSIFMSEATNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFA 584
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
TIRVVDRIFTRMGT+DNLESNSSTFMTEM+ETAF+MQNV+ RSLIVMDELGRATSSSDG
Sbjct: 585 TIRVVDRIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGL 644
Query: 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
A+AWSCCE+LLSLKAYT+FA+HM++L+ELATIYPNVK+LHFYV IR+NRLDFKFQL+DG
Sbjct: 645 AMAWSCCEYLLSLKAYTVFATHMDSLAELATIYPNVKVLHFYVDIRDNRLDFKFQLRDGT 704
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600
HVPHYGLLLAEVAGLPSTVI+TAR IT RIT KE KR+E+NC ++ +I +Y AQRLI
Sbjct: 705 LHVPHYGLLLAEVAGLPSTVIDTARIITKRITDKENKRIELNCGKHHEIHRIYRVAQRLI 764
Query: 601 CLKYSNQDEESIRHALQNLKESFIDGRI 628
CLKYS Q E+SIR ALQNL ESF + R+
Sbjct: 765 CLKYSRQTEDSIRQALQNLNESFTEERL 792
>sp|O15457|MSH4_HUMAN MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2
Length = 936
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 235/632 (37%), Positives = 397/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +LF +L TKT GG+R LR+N+L+PL DIETIN
Sbjct: 312 IDSSSAQNLELL--INNQDY---RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETIN 366
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 367 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 417
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L +K+ + LL Y S+ E++++ I ++I VI++D +
Sbjct: 418 ITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSL-EDKRFGIILEKIKTVINDDARYM 476
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I+ LDIARR++ + + + + ++ E+ LP L+ F++ +
Sbjct: 477 KGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP-LRTSFSSAR 535
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + I +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 536 GFFIQMTTDCIALPSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 595
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 596 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 649
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + I NN +++E +N +I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 650 WHPILEKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 709
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+S+ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 710 YSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 769
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV-IRNNRLD-----F 532
G I ++ CE+LLSLKA+T+FA+H L + +YPNV+ +HF V ++N + +
Sbjct: 770 GIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILY 829
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AEV+ LP +++ A+ IT++IT +++ + + + + ++ + +
Sbjct: 830 TYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQIT-RQILQNQRSTPEMERQRAV 888
Query: 593 YHAAQRLICLKYSNQ-DEESIRHALQNLKESF 623
YH A RL+ ++Q D +S+R L NLK+ +
Sbjct: 889 YHLATRLVQTARNSQLDPDSLRIYLSNLKKKY 920
>sp|Q99MT2|MSH4_MOUSE MutS protein homolog 4 OS=Mus musculus GN=Msh4 PE=2 SV=1
Length = 958
Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust.
Identities = 233/632 (36%), Positives = 392/632 (62%), Gaps = 34/632 (5%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID++S +NLE++ +++ + +++ +LF +L TKT GG+R LR+N+L+PL D+ETI+
Sbjct: 334 IDSSSAQNLELL--VNNQDYRSNH---TLFGVLNYTKTAGGSRRLRSNILEPLVDVETIS 388
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLDC+ EL+ +E+LFFGL + +F +T+++L PK+ D NA +S+
Sbjct: 389 MRLDCVQELLQDEELFFGLQSVISRF-LDTEQLLSVLVQIPKQ------DTVNAAESK-- 439
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
I+++I LK L+ + L LK+ + LL Y S+ E+ ++ I +I VI++D +
Sbjct: 440 ITNLIYLKHTLELVEPLKVTLKNCSTPLLRAYYGSL-EDHRFGLILDKIKTVINDDARYM 498
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
+ RTQ+C+A++ I LDIARR++ + + + + + E+ LP L+ F++ +
Sbjct: 499 KGCLNMRTQKCYAVRSNISEFLDIARRTYTEIVDDIAGMIAQLAEKYSLP-LRTSFSSSR 557
Query: 243 GFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + +LPS FI++ K N+ ++ +L +N R + + E Y T +
Sbjct: 558 GFFIQMTTDCAALSSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMI 617
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L+ I E + L L++ + +LDM++ SFAH + + Y RP FT+ LAI G
Sbjct: 618 VCKLLSEIYEHIHCLYKLSDTVSMLDMLL-SFAHACT---LSDYVRPEFTDT--LAIKQG 671
Query: 360 RHPILESIHNDF-IPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPILE I + + NN +I+E +N++I+TGPNMSGKSTYL+Q+ L I+AQIG YVPA
Sbjct: 672 WHPILEKISAEKPVANNTYITEGSNVLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE 731
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ R+ +IFTR+ T D++E+NSSTFM EMKE A+++ N +++SLI++DELGR T++ +
Sbjct: 732 YASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEE 791
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV-----VIRN-NRLDF 532
G I+++ CEHLLS+KA+T+F +H L L +Y NV+ +HF V RN + + +
Sbjct: 792 GIGISYAVCEHLLSIKAFTLFTTHFLELCHLDALYLNVENMHFEVQHVKNTSRNKDAILY 851
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
++L G +YGL AE + LPS+++ AR IT++IT++ ++ + +Q + +
Sbjct: 852 TYKLSRGLTEEKNYGLKAAEASSLPSSIVLDARDITTQITRQILQNQRSSPEMDRQ-RAV 910
Query: 593 YHAAQRLICLKYSNQDE-ESIRHALQNLKESF 623
YH A RL+ ++Q E + +R L NLK+ +
Sbjct: 911 YHLATRLVQAARNSQLEPDRLRTYLSNLKKKY 942
>sp|C5BMR5|MUTS_TERTT DNA mismatch repair protein MutS OS=Teredinibacter turnerae (strain
ATCC 39867 / T7901) GN=mutS PE=3 SV=1
Length = 864
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 179/576 (31%), Positives = 296/576 (51%), Gaps = 49/576 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+++DA + RNLE+ L+ + ++ +LF +L TT T G RLLR + PL+D+ T
Sbjct: 272 VSLDAATRRNLELDINLNGS------EENTLFSVLNTTATAMGGRLLRRWINTPLRDLHT 325
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFK---PKKVTSKVLDVDNAK 117
+++R + L+ N + F + Q L+ + +R+L + P+ +T
Sbjct: 326 LHSRQSAIAALLENYR-FEQVQQELKHI-GDLERILGRIALRSARPRDLTR--------- 374
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
L +L P L +LK A+ LA + + E + + + + + + E
Sbjct: 375 -----------LLNSLAIYPQLQPLLKSAECETLATLASEINE---FPGLVQELDKALVE 420
Query: 178 DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLP 237
+ P V R + I G D LD R + E + L + RE L LK+
Sbjct: 421 NP-----PVVIR--EGGVIAEGYDEELDELRGISTNAGEFLVKLETQERERTGLNTLKVG 473
Query: 238 FNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
+N G+++ I + K P+ +I+ N T EL + + SA R +
Sbjct: 474 YNRVHGYFIEISKSQAE-KAPAEYIRRQTLKNAERFITPELKTFEDKALSAKSRALSREK 532
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L++ + E + L + A + LD ++N+FA + +P F + I+
Sbjct: 533 ALYEQLIEKLNEHLRELQISAVAVAELD-VLNTFAERAHAL---KLVKPEFRGEAGIEIE 588
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + D FIPN++ ++ M+I+TGPNM GKSTY++Q LIV+LAQ+G YVP
Sbjct: 589 KGRHPVVEQVLTDPFIPNDLTLNAQQRMLIITGPNMGGKSTYMRQTALIVLLAQVGSYVP 648
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + +VDRIFTR+G+ D+L STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 649 AEACRLGLVDRIFTRIGSSDDLAGGRSTFMVEMTETANILNNATSDSLVLMDEIGRGTST 708
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C EHL LK++T+FA+H ++ L P VK +H + + F
Sbjct: 709 YDGLSLAWACVEHLAEKLKSFTLFATHYFEITALPAQLPTVKNVHLDATEYQDNIVFLHN 768
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
++ GP YGL +A++AG+P V+ A+ + ++
Sbjct: 769 IQAGPAS-KSYGLQVAKLAGIPGAVLRQAKDVLHKL 803
>sp|Q21LB1|MUTS_SACD2 DNA mismatch repair protein MutS OS=Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024) GN=mutS PE=3 SV=1
Length = 887
Score = 263 bits (671), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 185/569 (32%), Positives = 294/569 (51%), Gaps = 49/569 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLE L + L GT + +LF +L TT T G RLLR L PL+DI
Sbjct: 272 VTLDAATRRNLE----LDTNLAGTEDN--TLFSVLNTTTTAMGGRLLRRWLHSPLRDIYI 325
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
+N R ++ L+ N Q F L L+ + +R+L + +++ D+ S
Sbjct: 326 LNQRQSAIEALLDNYQ-FEPLRHTLKHI-SDLERILGRLALR----SARPRDLSRLCASI 379
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSF--LLANIYRSVCENEKYASIRKRIGEVIDED 178
+I +D+ PLL K+ K+ + F L+ + R++ EN + R G VI E
Sbjct: 380 AEFPAIQQHLNGIDS-PLLKKLAKEIREFPDLVDLLSRALMEN---PPVVIREGGVIAE- 434
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
G D LD R + + + L + R + L LK+ +
Sbjct: 435 --------------------GFDEELDELRAISTNAGDYLIKLEEQERAKTGLSTLKVGY 474
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ I K P+ +I+ N T EL + + SA R +
Sbjct: 475 NRVHGYYIEI-SKSQASSAPTEYIRRQTLKNAERFITPELKTFEDKALSAKSRALAREKG 533
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKP-VDRYTRPHFTENGPLAID 357
+ L++ + E + L + A + LD++ T++ + + + +P E + I+
Sbjct: 534 LYDDLIETLNEQLRELQVAASGVAELDVLT-----TLAERSNLLNFCKPELYEGEGIFIE 588
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D F+PN++ + M+I+TGPNM GKSTY++Q LIV+LAQIGCYVP
Sbjct: 589 QGRHPVVEQVLDDPFVPNDLLLDTDQRMLIITGPNMGGKSTYMRQTALIVLLAQIGCYVP 648
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + +VDRIFTR+G+ D+L STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 649 ASACKLGLVDRIFTRIGSSDDLAGGRSTFMVEMTETANILNNATRNSLVLMDEIGRGTST 708
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+C EHL +L A+T+FA+H L+ L V+ +H N+ + F +
Sbjct: 709 YDGLSLAWACVEHLANNLHAFTLFATHYFELTGLPKALAGVQNVHLDATEHNDSIVFLHK 768
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETA 564
++ GP +GL +A++AG+PS VI A
Sbjct: 769 IQPGPAS-KSFGLQVAKLAGIPSNVIADA 796
>sp|Q2JT35|MUTS_SYNJA DNA mismatch repair protein MutS OS=Synechococcus sp. (strain
JA-3-3Ab) GN=mutS PE=3 SV=1
Length = 882
Score = 261 bits (666), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 180/579 (31%), Positives = 295/579 (50%), Gaps = 50/579 (8%)
Query: 3 IDATSVRNLEIIEPL-HSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+D + RNLE+ + + A G SL +L ++T G R LR LLQPL+D E I
Sbjct: 289 LDTQTRRNLELTQTIREGAFVG------SLLWVLDRSRTAMGGRTLRRWLLQPLRDPEQI 342
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQT 121
R D + EL+ + L L L + +++ ++V +
Sbjct: 343 RLRQDTIQELLESPSLRTRLGSLLDSL------------YDLERLANRVASGTANPR--- 387
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
++ L ++L LP LA+++ +AQ+ LL ++ ++ +G I+ +L
Sbjct: 388 ---ELVALGSSLGKLPQLAELVAEAQTPLLQSL-------QQVDPALVDLGHRIEHTLLP 437
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
+ P + + I+ G+D LD R+ + L RE +P LK+ FN
Sbjct: 438 SPPPVLT---EGGLIRPGVDAELDRLRQQVEQDRHWIAQLEKTERERTGIPTLKVGFNKA 494
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+YLSI Q ++P +I+ N T EL R +A E R
Sbjct: 495 FGYYLSISRAKAQ-QVPKEYIRKQTLTNEERFITPELKEKEARILTAQTEINQREYELFV 553
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
L + + +A+ L +D + + YTRP T + L I+ GRH
Sbjct: 554 QLRQEAGSQAAAIRQVAQTLAAVDALFGLAEVAVQQG----YTRPVITADRRLIIEEGRH 609
Query: 362 PILES--IHNDFIPNNIFISE--AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
P++E F+PN++ + +++++TGPNMSGKSTYL+Q+ LI ILAQ+G +VPA
Sbjct: 610 PVVEKSLPQGLFVPNSVRLGSPHGPDLIVLTGPNMSGKSTYLRQIGLIQILAQMGSFVPA 669
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + + DR+FTR+G VD+L + STFM EM ETA ++ + ERSL+++DE+GR T++
Sbjct: 670 RRAELGLCDRVFTRIGAVDDLATGQSTFMVEMNETANILNHAGERSLVLLDEIGRGTATF 729
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN--NRLDFKF 534
DG +IAW+ E+L + ++A TIFA+H L++L T+ PNV +F VV++ +R+ F
Sbjct: 730 DGLSIAWAVAEYLATQVRARTIFATHYHELNQLETLLPNVA--NFQVVVKELRDRIIFLH 787
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
Q++ G YG+ + +AGLP VIE A+ + + + +
Sbjct: 788 QVQPGGADR-SYGIEVGRMAGLPQPVIERAKQVLALVEQ 825
>sp|B6ENH6|MUTS_ALISL DNA mismatch repair protein MutS OS=Aliivibrio salmonicida (strain
LFI1238) GN=mutS PE=3 SV=1
Length = 855
Score = 260 bits (665), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 190/626 (30%), Positives = 312/626 (49%), Gaps = 54/626 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L +L +L T T G+RLL+ L QP++ + +N
Sbjct: 268 LDAATRRNLEITQNLAGGF------NHTLSEVLDHTSTAMGSRLLKRWLHQPIRTHDVLN 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL SN L+ LS L++ + +R+L + +
Sbjct: 322 QRLDAIGELKSN-GLYAELSPQLKQI-GDVERILARLALRSARP---------------- 363
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVID--EDVL 180
+ L+ AL LP LA+ Q+F ++ + AS+ + I + + E +
Sbjct: 364 -RDLARLRNALQQLPELAQ---STQAFEQTHLL-------ELASLAQPIDSICELLERAV 412
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P V R A G + LD R + + L + RE + LK+ +NN
Sbjct: 413 KENPPVVIRDGGVLA--DGYNEELDQWRDLANGAALFLSKLEQEERERHDIDTLKVGYNN 470
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
GFY+ I K K P+ +++ N EL + + S+ + +
Sbjct: 471 VHGFYIQI-SKGQSHKAPAHYVRRQTLKNAERYIIPELKAHEDKVLSSKSKALAIEKKLW 529
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLAIDG 358
E L D + + L L+A + LD++ N A T++ Y RP + + + I+G
Sbjct: 530 EELFDQLLPHLEQLQLMANAISELDVLSNLAERADTLN------YCRPTLSSDIGMKIEG 583
Query: 359 GRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E + +D FI N I +++ M+I+TGPNM GKSTY++Q LI ++A +GCYVPA
Sbjct: 584 GRHPVVEQVMSDPFIANPINLNDDRKMLIITGPNMGGKSTYMRQTALIALMAHVGCYVPA 643
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I ++DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 644 DSAHIGLLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATQHSLVLMDEIGRGTSTY 703
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+ E L + + A T+FA+H L+EL ++ + +H V + + F +
Sbjct: 704 DGLSLAWASAEWLATKINAMTLFATHYFELTELPNLFSGLANVHLDAVEHGDEIAFMHAV 763
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK---QIQMLY 593
++G + YGL +A +AG+P VI+ A+ ++ + K + Q K Q+ ++
Sbjct: 764 QEGAAN-KSYGLAVASLAGVPKAVIKKAKQKLQQLENGQPKNQSLTSTQIKQEHQLSLIP 822
Query: 594 HAAQRLICLKYSNQDEESIRHALQNL 619
++ L N D+ S R AL+ L
Sbjct: 823 EPSEVEEALAKVNPDDLSPRQALEAL 848
>sp|Q8RA71|MUTS_THETN DNA mismatch repair protein MutS OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=mutS PE=3 SV=1
Length = 869
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 183/610 (30%), Positives = 319/610 (52%), Gaps = 53/610 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ ++RNLEI+E + +KK SL +L T T G RLL+ L +PL D +
Sbjct: 268 MGLDSNAIRNLEILESNRN-----KSKKGSLLGVLDRTVTPMGGRLLKKWLEEPLIDKDE 322
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++EL +N + L + L K + +R+ ++ VT K
Sbjct: 323 IEKRLDAVEELFNNYRERIELKELLNKV-YDLERLASKIVYQS--VTPK----------- 368
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
I +K +L LP + +L S LL IY + + + + E+ID+ +
Sbjct: 369 ----DFISIKLSLQNLPKIKNILSKFSSRLLKEIYEKL-------DVLQDVYELIDKSI- 416
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
+ + ++ IK G + ++D R++ + + NL RE+ + NL++ +N
Sbjct: 417 --KDDPSNQLKEGNIIKDGYNEMVDKLRKASTEGKNWIANLEADEREKTGIKNLRIGYNK 474
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ + +I ++P +I+ N T EL + A E I E
Sbjct: 475 VFGYYIEVTKSNIP-QVPDRYIRKQTLANAERYVTPELKEIE-ETILGAEEKLIELEY-- 530
Query: 301 EALVDAIREDVSVLTL----LAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAI 356
L + IRE V + + A+ + ++D+++ SFA T ++Y +P + I
Sbjct: 531 -ELFNEIREKVELQIVRIQNTAKYIAIIDVLI-SFAEVAET---NKYVKPIVDYEDRIVI 585
Query: 357 DGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E+I ++ F+ N+I I ++I+TGPNM+GKSTY++QV LIV++AQ+GC+V
Sbjct: 586 KEGRHPVVETISDEGFVANDIDIGPENPIMIITGPNMAGKSTYMRQVALIVLMAQVGCFV 645
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA ++ I +VD+IFTR+G D++ + STFM EM E A ++ + + +SLI++DE+GR TS
Sbjct: 646 PASYARIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILHSATSKSLIILDEVGRGTS 705
Query: 476 SSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
+ DG +IA + E++ +KA T+FA+H L++L V+ + V R + + F
Sbjct: 706 TYDGMSIAQAVIEYIHEKIKAKTLFATHYHELTKLEGKLRGVRNFNVSVEEREDDIIFLH 765
Query: 535 QLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME----INCLQYKQIQ 590
++ G YG+ ++++AGLP ++IE A+ I + + + + E ++ + QI
Sbjct: 766 KIVPGGSD-RSYGIQVSKLAGLPYSIIERAKEILEALERDKAVKNELEEAVSQFAFTQID 824
Query: 591 MLYHAAQRLI 600
+ A LI
Sbjct: 825 IFSSAKDALI 834
>sp|P40965|MSH4_YEAST MutS protein homolog 4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MSH4 PE=1 SV=2
Length = 878
Score = 257 bits (656), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 181/574 (31%), Positives = 295/574 (51%), Gaps = 43/574 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID+ +VR LE++E SL+ L TT T G R LR ++LQPL D +
Sbjct: 265 MLIDSKTVRGLELVEN------KLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGS 318
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFP---KETDRVLC--HFCFKPKKVTSKVLDVDN 115
I RL+ L+EL +N+ L L ++ P K R+LC H KP +
Sbjct: 319 IEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQ---------- 368
Query: 116 AKKSQTLISSIILLKTALDALPLLAKVLKDA--QSFLLANIYRSVCENEKYASIRKRIGE 173
I+ ++LLK L ++ L L D QS L++ + + N+ I K I
Sbjct: 369 ------RINYVLLLKETLQSVKSLKDALNDQLIQSRLISET-KKIFNNDAIMEIEKLINS 421
Query: 174 VIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233
I+ED + A Q+ +A+K +GLLD++R+ + + E + K+ N
Sbjct: 422 CINEDCVWASSAIQLLNQRSYAVKSDSNGLLDVSRQIYKEVKEEFFREVEDLTAKNKI-N 480
Query: 234 LKLPFNNRQGFYLSIPHK---DIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG 290
L +++ +GFYL I + D LP FI N I C+TL + N R K
Sbjct: 481 LDHNYDSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVME 540
Query: 291 ECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE 350
E + +E ++ L+D I +S L ++AE + +LD++ SF + + + YT P FT
Sbjct: 541 EILLLSEETVDELLDKIATHISELFMIAEAVAILDLVC-SFTYNLKE---NNYTIPIFTN 596
Query: 351 NGPLAIDGGRHPILESIHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILA 409
N L I RHP+LE + +F+PN I ++ ++++ I+TG NMSGKS YL+QV LI I+A
Sbjct: 597 N--LLIRDSRHPLLEKVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMA 654
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
Q+G +PA + + V R+ R+ D++E SS F EMKE A+ + +++ +L+++DE
Sbjct: 655 QMGSGIPALYGSFPVFKRLHARVCN-DSMELTSSNFGFEMKEMAYFLDDINTETLLILDE 713
Query: 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN-N 528
LGR +S +DGF ++ + EHLL +A ++H +++ ++ + P V LH V+ N N
Sbjct: 714 LGRGSSIADGFCVSLAVTEHLLRTEATVFLSTHFQDIPKIMSKKPAVSHLHMDAVLLNDN 773
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIE 562
+ +QL + + G+ + + P + E
Sbjct: 774 SVKMNYQLTQKSVAIENSGIRVVKKIFNPDIIAE 807
>sp|Q2JIA6|MUTS_SYNJB DNA mismatch repair protein MutS OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=mutS PE=3 SV=1
Length = 884
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 180/586 (30%), Positives = 299/586 (51%), Gaps = 64/586 (10%)
Query: 3 IDATSVRNLEIIEPL-HSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETI 61
+DA + RNLE+ + + A G SL +L ++T G R LR LLQPL+D E I
Sbjct: 299 LDAQTRRNLELTQTIREGAFVG------SLLWVLDHSRTAMGGRTLRRWLLQPLRDSEQI 352
Query: 62 NTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQT 121
R D + EL+ N L L L + +++ ++V +
Sbjct: 353 RLRQDTIQELLENPSLRARLGSLLDSL------------YDLERLANRVGSGTANPR--- 397
Query: 122 LISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLH 181
++ L ++L LP LA+++ +A++ LL ++ ++ +G I+ +L
Sbjct: 398 ---ELVALGSSLGKLPQLAELVGEAKTPLLQSL-------QQVDPALVDLGRRIEHTLLP 447
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
+ P + + I+ G+D LD R+ + V L R+ +P LK+ FN
Sbjct: 448 SPPPILT---EGGLIRPGVDPELDRLRQQVEQDRQWVAQLEKSERDRTGIPTLKVGFNKA 504
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAG-------ECYI 294
G+YLSI ++P +I+ N T EL R +A E ++
Sbjct: 505 FGYYLSISRAKAH-QVPKEYIRKQTLTNEERFITPELKEKEARILTAQTDINQREYELFV 563
Query: 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPL 354
+ + +AIR+ L + + L ++ V YTRP T + L
Sbjct: 564 QLRQEAGSRAEAIRQVAQTLAAVDALFGLAEVAVQQG-----------YTRPLLTTDRRL 612
Query: 355 AIDGGRHPILES--IHNDFIPNNIFISE--AANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
I+ GRHP++E F+PN++ + +++++TGPNMSGKSTYL+Q+ LI ILAQ
Sbjct: 613 IIEEGRHPVVEKSLPQGLFVPNSVQLGSPHGPDLIVLTGPNMSGKSTYLRQIGLIQILAQ 672
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
+G +VPA + + + DR+FTR+G VD+L + STFM EM ETA ++ + ERSL+++DE+
Sbjct: 673 MGSFVPARRAELGLCDRVFTRIGAVDDLATGQSTFMVEMNETANILNHAGERSLVLLDEI 732
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIR--N 527
GR T++ DG +IAW+ E+L + ++A T+FA+H L++L T+ PNV +F VV++
Sbjct: 733 GRGTATFDGLSIAWAVAEYLATQVRARTVFATHYHELNQLETLLPNVA--NFQVVVKELQ 790
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+R+ F Q++ G YG+ + +AGLP VI+ A + + + K
Sbjct: 791 DRIIFLHQVQPGGADR-SYGIEVGRMAGLPQPVIQRAEQVLALVEK 835
>sp|A7HMG4|MUTS_FERNB DNA mismatch repair protein MutS OS=Fervidobacterium nodosum
(strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=mutS PE=3
SV=1
Length = 823
Score = 256 bits (653), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 175/594 (29%), Positives = 308/594 (51%), Gaps = 49/594 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+T+V NL +I +K ++L+ +L T T G RLL+ +L PLKD
Sbjct: 262 MTLDSTTVENLSLI---------PGDKGKNLYDVLNKTNTPMGGRLLKWVILHPLKDRNE 312
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL ++ + L + ++L + +R++ L+ D+AK
Sbjct: 313 IEKRLWYVEAFYEDPLLTNEIREYLNGV-YDLERIINR------------LEYDSAKPK- 358
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFL-LANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT L+ + + + L + + LA + + + I+ +I E+
Sbjct: 359 ----DLISLKTTLEVVEPIKEALSTNEKLIQLAQMLPDLSQ------IKVKI-----ENT 403
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
L + IK G+ LD R ++E + + R + + LK+ FN
Sbjct: 404 LLEEFEGELGEGKI--IKEGVSKELDEYRELLYHSNEKLKEFEERERAKTGIQKLKVSFN 461
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
N G+Y+ IP ++ P + ++ N +T EL + +A + I +
Sbjct: 462 NVFGYYIEIPKGQVKFA-PQEYTRIQTLVNAERYTTTELKEFEQKILAAKEKVEILEKTI 520
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ + D ++ L LAE+L +D+ N FA+ + Y++P +++ + G
Sbjct: 521 FKQICDELKGYTQDLRKLAEMLSWIDVYSN-FAYV---SKLYSYSKPEISDS-EFKVLNG 575
Query: 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419
RHP++E ++F+PN+I++S+ M I+TGPNMSGKSTY++QV LI ++ QIGC+VPA +
Sbjct: 576 RHPVVERFVDEFVPNDIYMSDELRMYILTGPNMSGKSTYIRQVGLIALMTQIGCFVPAQY 635
Query: 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479
+ + V DRIFTRMG D++ + STF+TEM E A ++ +++SL+++DE+GR TS+ DG
Sbjct: 636 AKVPVFDRIFTRMGARDDISTGKSTFLTEMNEVALILSKATQKSLVLLDEVGRGTSTFDG 695
Query: 480 FAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
+IAW+ E++ + +K TIFA+H L+EL+ Y +K L V + + F ++ +
Sbjct: 696 ISIAWAMSEYIYNEIKCKTIFATHFTELTELSEGYSGIKNLTVDVKETPDGVVFLHKVVE 755
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQML 592
G YG+ +A +AGLP ++IE A+ I + I +K ++ L+ Q++ +
Sbjct: 756 GVAD-RSYGIEVAAIAGLPESIIERAKEILNIIVEKSDLEKKVGVLKEGQMKKI 808
>sp|B0VUC9|MUTS_ACIBS DNA mismatch repair protein MutS OS=Acinetobacter baumannii (strain
SDF) GN=mutS PE=3 SV=1
Length = 881
Score = 255 bits (651), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>sp|C1DSR1|MUTS_AZOVD DNA mismatch repair protein MutS OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=mutS PE=3 SV=1
Length = 855
Score = 255 bits (651), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 178/570 (31%), Positives = 284/570 (49%), Gaps = 42/570 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L + + +L ++ +T G+RLL L +PL+D +
Sbjct: 266 LDGASRRNLELDVNL------SGGRDNTLQSVIDRCQTAMGSRLLGRWLNRPLRDRAVLE 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R D + L+ + + F L L++ + +R+L + NA+
Sbjct: 320 ARQDTVACLLQDYR-FESLQPQLKEI-GDVERILARIGLR------------NARPR--- 362
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL ALP L L ++ L + ++ + A + +R +ID
Sbjct: 363 --DLARLRDALAALPQLQTALSPLEAPHLQALAGNIRTYPELAELLRRA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R +K G D LD + + + +L + + LPNLK+ +N
Sbjct: 415 --PAVIRDGGV--LKQGYDAELDELLSLSENAGQFLMDLEAREKARTGLPNLKVGYNRIH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ +P + + P+ +I+ T EL + + SA R + E
Sbjct: 471 GYYIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKALYEE 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
L++ + ++ L A L LD++ N ++ + RP F E L I GRHP
Sbjct: 530 LLEILIAQLAPLQETATALAELDVLANLAERALNLD----FNRPRFVEEPCLRIRQGRHP 585
Query: 363 ILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 586 VVEQVLDTPFVANDLELDDNTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAQSCE 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N SERSL++MDE+GR TS+ DG +
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASERSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPR 541
+AW+ EHL L+A+T+FA+H L+ LA P V +H N R+ F + GP
Sbjct: 706 LAWAAAEHLAGLRAWTLFATHYFELTVLAESQPVVANVHLSATEHNERIVFLHHVLPGPA 765
Query: 542 HVPHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI AR +R+
Sbjct: 766 SQ-SYGLAVAQLAGVPGPVISRAREHLARL 794
>sp|B0VAU7|MUTS_ACIBY DNA mismatch repair protein MutS OS=Acinetobacter baumannii (strain
AYE) GN=mutS PE=3 SV=1
Length = 881
Score = 255 bits (651), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>sp|B2HX50|MUTS_ACIBC DNA mismatch repair protein MutS OS=Acinetobacter baumannii (strain
ACICU) GN=mutS PE=3 SV=1
Length = 881
Score = 255 bits (651), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>sp|B7IBV9|MUTS_ACIB5 DNA mismatch repair protein MutS OS=Acinetobacter baumannii (strain
AB0057) GN=mutS PE=3 SV=1
Length = 881
Score = 255 bits (651), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>sp|B7GW85|MUTS_ACIB3 DNA mismatch repair protein MutS OS=Acinetobacter baumannii (strain
AB307-0294) GN=mutS PE=3 SV=1
Length = 881
Score = 255 bits (651), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 175/584 (29%), Positives = 303/584 (51%), Gaps = 49/584 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D + RNLEIIEPL GTS LF ++ +T G RLL L+QP++D ++
Sbjct: 277 LDPITRRNLEIIEPLFE--HGTS-----LFQLVNDCQTAMGGRLLSRTLMQPVRDTALLD 329
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++ Q ++ + + R++ ++V S+V + +A+
Sbjct: 330 ARLDAIE-------------QLIQGYHESPVRLVLKEIGDIERVLSRVA-LGSARPR--- 372
Query: 123 ISSIILLKTALDALPLL----AKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDED 178
++ L+ A +P L A V++ +S LL + + + + + S+ + + I E+
Sbjct: 373 --DLVQLRHACAQIPFLRNALAPVVQAKKSKLLGQLDQELGD---FKSLHQHLMAAIVEN 427
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
P + R A G D LD R+ + + +L K RE + LK+ +
Sbjct: 428 P-----PVLLRDGNVIA--EGYDAELDELRQIRDHAGQFLIDLEIKERERTGISTLKIGY 480
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEI 298
N G+Y+ + + + P+ +I+ N T EL S + S+ R +
Sbjct: 481 NRVSGYYIELTRAQAE-QAPADYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKA 539
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
EAL++ +RE+++ L +++ + +D+I N FAH ++ + RP FT + I G
Sbjct: 540 LFEALLENLRENIAHLQMMSSAIAQIDVIAN-FAHQAR---LNNWARPEFTPETGIKIQG 595
Query: 359 GRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
GRHP++E++ F PN+ F+ M I+TGPNM GKST+++Q LI +LA G YVPA
Sbjct: 596 GRHPVVEALSKAPFTPNDTFLDVQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSYVPA 655
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ + +DRIFTR+G+ D+L + STFM EM ET+ ++ + + +SL++MDE+GR TS+
Sbjct: 656 RAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVLMDEVGRGTSTY 715
Query: 478 DGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536
DG ++AW+C L +K +FA+H L+EL + P + H N L ++
Sbjct: 716 DGLSLAWACVVDLTKRVKCLCLFATHYFELTELGS-EPGIDNYHVTAQELNGNLILLHKV 774
Query: 537 KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
+ GP H GL +A++AG+P+ VI+ A+ + K++ + ++
Sbjct: 775 QQGPASQSH-GLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQ 817
>sp|A4VJN9|MUTS_PSEU5 DNA mismatch repair protein MutS OS=Pseudomonas stutzeri (strain
A1501) GN=mutS PE=3 SV=2
Length = 859
Score = 254 bits (648), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 179/573 (31%), Positives = 284/573 (49%), Gaps = 48/573 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D S RNLE+ L ++ +L ++ +T G+RLL L +PL++ E +
Sbjct: 270 LDGASRRNLELDVNL------AGGRENTLQSVMDRCQTAMGSRLLTRWLNRPLRNREILE 323
Query: 63 TRLD---CLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R D CL E EQL L + +R+L + NA+
Sbjct: 324 ARQDSITCLLEHYRFEQLQPQLKDI-----GDLERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L ++D + L + +S+ + A + R +ID
Sbjct: 367 -----DLARLRDALAALPQLQAGMQDLVAPHLLGLAKSIGTYPELADLLARA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDELQSLSENAGQYLMDLETREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAESA-PADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L++ + ++ L A L LD++ N ++ RP F E L I+ G
Sbjct: 531 YDELLEMLIGHLAPLQESAAALAELDVLSNLAERALNLD----LNRPRFVEQPCLRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + +A M+++TGPNM GKSTY++Q LIV+LAQIG +VPA
Sbjct: 587 RHPVVEQVLETPFVANDLALDDATRMLVITGPNMGGKSTYMRQTALIVLLAQIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N S+RSL++MDE+GR TS+ D
Sbjct: 647 ACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+A+T+FA+H L+ L P V +H N R+ F +
Sbjct: 707 GLSLAWAAAEQLARLRAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVFLHHVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571
GP YGL +A++AG+P VI+ AR SR+
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGEVIQRARDHLSRL 798
>sp|Q1H2P1|MUTS_METFK DNA mismatch repair protein MutS OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=mutS1 PE=3 SV=1
Length = 884
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 176/582 (30%), Positives = 293/582 (50%), Gaps = 44/582 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ +DA + RNLEI + L G S+ +L+ +L TT T G RLLR+ L PL+
Sbjct: 297 IQLDAATRRNLEIDQTLR----GESSP--TLYSLLNTTVTAMGARLLRSWLHHPLQHQAD 350
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RL + L + + GL LR + +R+ K T++ D+
Sbjct: 351 IQARLQAVKVLQAQ---YDGLRPLLRNV-GDIERMAARVALK----TARPRDLSG----- 397
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L+ +L LP L +VL+ S LL ++ + + + A++ I + DE
Sbjct: 398 --------LRDSLQQLPALQRVLRPEDSALLHSLQQQL--DVPQAALDMLIAAIKDEPA- 446
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A ++ I G D LD R + E + + RE + NLK+ +N+
Sbjct: 447 -------AVLREGGVIADGFDAELDELRAIQSNCGEFLLQFEAQERERSGISNLKVEYNS 499
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
GFY+ I + +P+ + + N T EL + + SA R +
Sbjct: 500 VHGFYIEISRAQSE-NVPAEYRRRQTLKNVERYITPELKTFEDKVLSANERALAREKFLF 558
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ L+ ++ ++ AE + LD ++ +FA V +Y P F+ L I GR
Sbjct: 559 DELLGNLQPALAAWQRNAEAVAQLD-VLATFAERAD---VLKYVAPQFSSEAGLDIVDGR 614
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
HP++E + FI N++ +S ++++TGPNM GKSTY++Q LIV+LA GC+VPA +
Sbjct: 615 HPVVEQLAQPFIANSVSLSPYRQLLLITGPNMGGKSTYMRQTALIVLLAHCGCFVPAKSA 674
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
I +DRIFTR+G D+L STFM EM ETA ++ N +ERSL+++DE+GR TS+ DG
Sbjct: 675 RIGPIDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATERSLVLLDEIGRGTSTFDGL 734
Query: 481 AIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
++AW+ LL ++YT+FA+H L+ ++ + + +H V + + F +++G
Sbjct: 735 SLAWAVARQLLEKNRSYTLFATHYFELTRISEEFKHAANVHLDAVEHGDGIVFLHNVEEG 794
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
P YGL +A++AG+P TV+ A+ ++ + +V + +
Sbjct: 795 PAS-QSYGLQVAQLAGIPRTVVNAAKRKLVQLEQSQVMQQSL 835
>sp|Q5E7G7|MUTS_VIBF1 DNA mismatch repair protein MutS OS=Vibrio fischeri (strain ATCC
700601 / ES114) GN=mutS PE=3 SV=2
Length = 854
Score = 253 bits (646), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 189/628 (30%), Positives = 311/628 (49%), Gaps = 59/628 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L +L +L T T G+RLL+ L QP++ + +N
Sbjct: 268 LDAATRRNLEITQNLAGGF------NHTLAEILDHTSTAMGSRLLKRWLHQPVRTHDVLN 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL + LF ++ L+ + +R+L + +
Sbjct: 322 QRLDAIGELKES-GLFADMAPQLKNI-GDVERILARLALRSARP---------------- 363
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ AL LP L++ ++ Q L + S + SI + + I E+
Sbjct: 364 -RDLARLRNALQQLPELSQTTQEFQQDHLLTLAASA---QPIDSICELLERAIKENP--- 416
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R ++ + L + RE + LK+ +NN
Sbjct: 417 --PVVIRDGGVLA--DGYNEELDQWRDLANGATQYLEKLEQEERERHDIDTLKVGYNNVH 472
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GFY+ I K K P+ ++ Q +K+ L E LN ++K+ A E +
Sbjct: 473 GFYIQI-SKGQSHKAPAHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAIEKRL--- 528
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGPLA 355
E L D + + L +A + LD++ N A T++ Y RP T+ +
Sbjct: 529 --WEELFDQLLPHLEQLQSMANAISELDVLSNLAERADTLN------YCRPVLTKETGIN 580
Query: 356 IDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+GGRHP++E + +D FI N I ++ M+I+TGPNM GKSTY++Q LI ++A +GCY
Sbjct: 581 IEGGRHPVVEQVMSDPFIANPIKLNPDRKMLIITGPNMGGKSTYMRQTALIALMAHVGCY 640
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR T
Sbjct: 641 VPADSAEIGTLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKHSLVLMDEIGRGT 700
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ E L + + A T+FA+H L+EL ++ + +H V + + F
Sbjct: 701 STYDGLSLAWASAEWLATKINAMTLFATHYFELTELPNLFTGLANVHLDAVEHGDEIAFM 760
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE--VKRMEINCLQYKQIQM 591
+++G + YGL +A +AG+P +VI+ A+ + + V + Q+ +
Sbjct: 761 HAVQEGAAN-KSYGLAVASLAGVPKSVIKKAKQKLQHLESGQVPVPATSTTVKEEHQLSL 819
Query: 592 LYHAAQRLICLKYSNQDEESIRHALQNL 619
+ ++ L + N D+ + R AL+ L
Sbjct: 820 IPEISEVEEALAHVNPDDLTPRQALEEL 847
>sp|A6LLR1|MUTS_THEM4 DNA mismatch repair protein MutS OS=Thermosipho melanesiensis
(strain BI429 / DSM 12029) GN=mutS PE=3 SV=1
Length = 819
Score = 253 bits (645), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 181/590 (30%), Positives = 297/590 (50%), Gaps = 47/590 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D+ +V NL +I K ++LF +L TKT G RLL+ +LQPLK+ +
Sbjct: 253 MILDSKTVENLSLI---------PGEKGKNLFDILNKTKTSMGARLLKKWILQPLKEKKE 303
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R ++ ++ L + ++L + +R+L + KV+ K D+ + K+S
Sbjct: 304 ILERQKLVEAFYNDHLLLNEVREYLSGV-YDLERILTRLGYG--KVSPK--DLVSLKRSL 358
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
L+ SI DAL ++ AQS N + E Y G D +V
Sbjct: 359 YLVPSI------KDALRTNENLVSFAQSLNEFNEVVGILEKALYDEPSNAPG---DGNV- 408
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
IKGG LD R + E + RE+ + L++ FN
Sbjct: 409 ---------------IKGGYSVELDDYRNLLFHSEEKLKEFQESEREKTGIQKLRVGFNQ 453
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ +P ++ +P +I+ N+ T EL + SA + + +
Sbjct: 454 VFGYYIEVPKGQVKN-VPDYYIRKQTLVNSERYITQELKEFEEKIMSAREKVELIEKSLF 512
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
E L + E + L LA+ L LD I N + YT+P FT G + R
Sbjct: 513 EELKQKLSEYIDGLRNLAQKLSELDAISN----LAMVARLYGYTKPKFT-GGEFYVKNAR 567
Query: 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
H ++E +DF+ N+I++ + M IVTGPNMSGKSTY++QV LI ++AQIG +VPA +
Sbjct: 568 HAVVERYVSDFVANDIYMDDRRRMYIVTGPNMSGKSTYIRQVGLIAVMAQIGSFVPADDA 627
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
I + DR+FTRMG D++ + STF+ EM E A +++ +++SL+++DE+GR TS+ DG
Sbjct: 628 EIPIFDRVFTRMGARDDISTGKSTFLIEMSEVALILEKATKKSLVLLDEVGRGTSTFDGI 687
Query: 481 AIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
+IAW+ E++ + + T+FA+H L+EL+ +Y +K L V NN + F ++ +G
Sbjct: 688 SIAWAMSEYIYNEIGCETMFATHFTELTELSDVYEGIKNLTIEVRETNNGVVFLHKVVEG 747
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQI 589
YG+ +A++AG+P V+E A+ I I++K ++ L+ Q+
Sbjct: 748 IAD-RSYGIEVAQIAGVPDGVVERAKEILDIISQKSELEKKVRVLKEGQL 796
>sp|B7VK59|MUTS_VIBSL DNA mismatch repair protein MutS OS=Vibrio splendidus (strain
LGP32) GN=mutS PE=3 SV=1
Length = 853
Score = 253 bits (645), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 185/571 (32%), Positives = 294/571 (51%), Gaps = 53/571 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T T G+R+L+ L QP+++I ++
Sbjct: 266 LDAATRRNLEITQNLGG---GTDN---TLAEVLDHTATAMGSRMLKRWLHQPMRNISALD 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E M + LF L L++ + +R+L + + D A+
Sbjct: 320 QRLDAIGE-MKDLALFTELQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A++ LP LA+ L + L + +YAS + E++ E +
Sbjct: 367 ------LRQAMEYLPELAETLTQLKHPYLTQL-------AQYASPVDEVSELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R +E + L + RE + LK+ +NN
Sbjct: 413 NPPVVIRDGGVIA--EGYNAELDEWRDLAAGATEFLDKLEQEERERHGIDTLKVGYNNVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E L+ ++K+ A E + E
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLSSKSKALAIEKKLWDE 529
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
L D + + L +A + LD++ N A T +D Y RP TE+ + I
Sbjct: 530 -----LFDLLLPYLERLQNIASSVSQLDVLQN-LAERADT--LD-YCRPTMTESAGVQIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + ++ FI N I +++ M+I+TGPNM GKSTY++Q LI ++A IGCYVP
Sbjct: 581 AGRHPVVEQVMDEPFIANPIDLNDQRKMLIITGPNMGGKSTYMRQTALIALMAHIGCYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A +TI +DRIFTR+G D+L S STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 641 AESATIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL P + +H V + + F
Sbjct: 701 YDGLSLAWASAEWLANQINAMTLFATHYFELTELPNQIPTLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+++G YGL +A +AG+P VI+ AR+
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKAVIKNARA 790
>sp|A4XL47|MUTS_CALS8 DNA mismatch repair protein MutS OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=mutS
PE=3 SV=1
Length = 863
Score = 252 bits (643), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 192/603 (31%), Positives = 309/603 (51%), Gaps = 79/603 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID ++ RNLE+ E + + +KK SLF +L KT G+RL++ L +PL D+
Sbjct: 254 LQIDLSTKRNLELTESIIA-----RSKKNSLFGILDQAKTSMGSRLIKKWLERPLIDVVE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++EL +N L + L + +R+ F +K NAK
Sbjct: 309 INRRLDAVEELYNNFPLLMQIEGLLEGI-YDIERLSSKFAYKSI----------NAK--- 354
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK +++ LP L ++L + +S LL +Y + E S+ I I+ED
Sbjct: 355 ----DLLSLKKSIEVLPRLKELLGEFKSPLLKELYNELDTLEDVYSL---IDSSINED-- 405
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A V ++ IK G + +D R ++ E + K R + NLK+ +N
Sbjct: 406 -APVGL----KEGGIIKDGFNDHVDRLRNISKNSKELLIQYEEKERNLTGIKNLKIGYNK 460
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASL-----NVRNKSAAGE---- 291
G+Y+ + + +P +I+ N T EL L N K E
Sbjct: 461 VFGYYIEVTKSNY-SLVPERYIRKQTLANAERYVTEELKKLEDEIINAEQKLVELEYELF 519
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
C IR +I E+ ++ I++ S + ++ + LC SFAH +RYT+P
Sbjct: 520 CQIRDKI--ESQIERIQKTASCIAII-DALC-------SFAHIAID---NRYTKPIVYLG 566
Query: 352 GPLAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVIL 408
+ I GRHP++E + +++F+PN+ + N V I+TGPNM+GKSTY++QV LIVI+
Sbjct: 567 DRIYIKNGRHPVVEKMIGYSNFVPNDTELDNDQNRVLIITGPNMAGKSTYMRQVALIVIM 626
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
AQ+GC+VPA + I +VD+IF+R+G D++ S STFM EM E A +++N + +SLI+ D
Sbjct: 627 AQMGCFVPAEEAQIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIFD 686
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVI 525
E+GR TS+ DG +IAW+ E + + A T+FA+H L+EL VK
Sbjct: 687 EVGRGTSTYDGLSIAWAVLEFVADKSKIGAKTLFATHYHELTELEEKISGVK-------- 738
Query: 526 RNNRLDFKFQLKD--GPRHV------PHYGLLLAEVAGLPSTVIETARSITSRITKKEVK 577
N R+D K + K+ R + YG+ +A +AG+P V++ A I ++ + ++
Sbjct: 739 -NYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLQRAEQILKKLEEADIN 797
Query: 578 RME 580
R E
Sbjct: 798 RKE 800
>sp|P27345|MUTS_AZOVI DNA mismatch repair protein MutS OS=Azotobacter vinelandii GN=mutS
PE=3 SV=1
Length = 855
Score = 252 bits (643), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 177/568 (31%), Positives = 282/568 (49%), Gaps = 42/568 (7%)
Query: 5 ATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTR 64
S RNLE+ L + + +L ++ +T G+RLL L +PL+D + R
Sbjct: 268 GASRRNLELDVNL------SGGRDNTLQSVIDRCQTAMGSRLLGRWLNRPLRDRAVLEAR 321
Query: 65 LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLIS 124
D + L+ + + F L L++ + +R+L + NA+
Sbjct: 322 QDTVACLLQDYR-FESLQPQLKEI-GDVERILARIGLR------------NARPR----- 362
Query: 125 SIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARV 184
+ L+ AL ALP L L ++ L + ++ + A + +R +ID
Sbjct: 363 DLARLRDALAALPQLQTALSPLEAPHLQALAGNIRTYPELAELLRRA--IIDNP------ 414
Query: 185 PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGF 244
P V R +K G D LD + + + +L + + LPNLK+ +N G+
Sbjct: 415 PAVIRDGGV--LKQGYDAELDELLSLSENAGQFLMDLEAREKARTGLPNLKVGYNRIHGY 472
Query: 245 YLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALV 304
Y+ +P + + P+ +I+ T EL + + SA R + E L+
Sbjct: 473 YIELPRVQAE-QAPADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKALYEELL 531
Query: 305 DAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPIL 364
+ + ++ L A L LD++ N ++ + RP F E L I GRHP++
Sbjct: 532 EILIAQLAPLQETATALAELDVLANLAERALNLD----FNRPRFVEEPCLRIRQGRHPVV 587
Query: 365 ESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR 423
E + F+ N++ + + M+I+TGPNM GKSTY++Q LIV+LA IG +VPA +
Sbjct: 588 EQVLDTPFVANDLELDDNTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAQSCELS 647
Query: 424 VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIA 483
+VDRIFTR+G+ D+L STFM EM ETA ++ N SERSL++MDE+GR TS+ DG ++A
Sbjct: 648 LVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASERSLVLMDEVGRGTSTFDGLSLA 707
Query: 484 WSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHV 543
W+ EHL L+A+T+FA+H L+ LA P V +H N R+ F + GP
Sbjct: 708 WAAAEHLAGLRAWTLFATHYFELTVLAESQPVVANVHLSATEHNERIVFLHHVLPGPASQ 767
Query: 544 PHYGLLLAEVAGLPSTVIETARSITSRI 571
YGL +A++AG+P VI AR +R+
Sbjct: 768 -SYGLAVAQLAGVPGPVISRAREHLARL 794
>sp|A8F753|MUTS_THELT DNA mismatch repair protein MutS OS=Thermotoga lettingae (strain
ATCC BAA-301 / DSM 14385 / TMO) GN=mutS PE=3 SV=1
Length = 811
Score = 251 bits (642), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 166/563 (29%), Positives = 290/563 (51%), Gaps = 49/563 (8%)
Query: 18 HSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQL 77
H +L G K ++LF +L TKT G+RLL+ +LQPL+D+ IN RLD + + + L
Sbjct: 261 HLSLVG-GEKGKNLFDVLNHTKTSMGSRLLKNWILQPLRDLYEINKRLDKVQAFVEDSIL 319
Query: 78 FFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALP 137
+ ++L+ ++ R+ + + + ++ L++ L P
Sbjct: 320 LNEIREYLQAV-RDIQRIANRINY-----------------GKASVKDLVALRSTLQVCP 361
Query: 138 LLAKVLKDAQSF---LLANIYRSVCE--NEKYASIRKRIGEVIDEDVLHARVPFVARTQQ 192
+ +VL ++F + + +CE N+ +I++ VI E +
Sbjct: 362 YIKEVLLTNEAFPEAAMVDCLHDICEILND---AIKEEPSSVIGEGKV------------ 406
Query: 193 CFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKD 252
IK G D LD R + E ++N + R+ +PNL++ +N+ G+Y+ I
Sbjct: 407 ---IKEGYDEQLDQLRELVYHSQEFLNNFEQRERDRTGIPNLRVGYNSVFGYYIEITKSH 463
Query: 253 IQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVS 312
+ K+P +++ N T EL + +A R + + + ++ V
Sbjct: 464 L-SKIPPNYVRKQTLVNAERFITDELKEFEQKMLTAKENLERREKEIYDEICASLSSKVG 522
Query: 313 VLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFI 372
++ LAE L +D ++++ A+ YT+P F+ +G L + RHP++E + + F+
Sbjct: 523 LIIELAEFLAQID-VLSTLAYVAIRYG---YTKPSFSNDGKLLLRNSRHPVVERLVDTFV 578
Query: 373 PNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRM 432
PN++ + N +I+TGPNMSGKST+++QV L+ I+AQ+G +VPA + + V DRIF +M
Sbjct: 579 PNDLEMDRTKNFIILTGPNMSGKSTFIRQVALVSIMAQMGSFVPADEAILPVFDRIFAKM 638
Query: 433 GTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492
G D++ S STF+ EM E A ++ +E SLI++DE+GR TS+ DG +IAW+ E+L +
Sbjct: 639 GIRDDIASGKSTFLIEMNEVAKIVYQATENSLILLDEVGRGTSTFDGISIAWAVSEYLQN 698
Query: 493 -LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLA 551
+ IFA+H L+ELA +Y + V+ N++ F ++ DG YG+ +A
Sbjct: 699 QISCKCIFATHFTELTELAKMYDGIVNKTVQVIEEKNQVIFLHRVVDGIAD-RSYGIEVA 757
Query: 552 EVAGLPSTVIETARSITSRITKK 574
+AGLP +I+ AR + I K
Sbjct: 758 GIAGLPGEIIQRAREVLDVIANK 780
>sp|B5FAC8|MUTS_VIBFM DNA mismatch repair protein MutS OS=Vibrio fischeri (strain MJ11)
GN=mutS PE=3 SV=1
Length = 854
Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 190/634 (29%), Positives = 310/634 (48%), Gaps = 71/634 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L +L +L T T G+RLL+ L QP++ + +N
Sbjct: 268 LDAATRRNLEITQNLAGGF------NHTLAEILDHTSTAMGSRLLKRWLHQPVRTHDVLN 321
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + EL + LF ++ L+ + +R+L + +
Sbjct: 322 QRLDAIGELKES-GLFADIAPQLKNI-GDVERILARLALRSARP---------------- 363
Query: 123 ISSIILLKTALDALPLLAKVLKD-AQSFLL-----ANIYRSVCENEKYASIRKRIGEVID 176
+ L+ AL LP L++ ++ Q+ LL A S+CE +
Sbjct: 364 -RDLARLRNALQQLPELSQTTQEFQQNHLLTLAASAQPIDSICE--------------LL 408
Query: 177 EDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKL 236
E + P V R A G + LD R ++ + L + RE + LK+
Sbjct: 409 ERAIKENPPVVIRDGGVLA--DGYNEELDQWRDLANGATQYLEKLEQEERERHDIDTLKV 466
Query: 237 PFNNRQGFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGE 291
+NN GFY+ I K K P+ ++ Q +K+ L E LN ++K+ A E
Sbjct: 467 GYNNVHGFYIQI-SKGQSHKAPAHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAIE 525
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFT 349
+ E L D + + L +A + LD++ N A T++ Y RP T
Sbjct: 526 KRL-----WEELFDQLLPHLEQLQSMANAISELDVLSNLAERADTLN------YCRPVLT 574
Query: 350 ENGPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
+ + I+GGRHP++E + +D FI N I ++ M+I+TGPNM GKSTY++Q LI ++
Sbjct: 575 KETGINIEGGRHPVVEQVMSDPFIANPIKLNPDRKMLIITGPNMGGKSTYMRQTALIALM 634
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
A +GCYVPA + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MD
Sbjct: 635 AHVGCYVPADSAEIGTLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKHSLVLMD 694
Query: 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527
E+GR TS+ DG ++AW+ E L + + A T+FA+H L+EL ++ + +H V
Sbjct: 695 EIGRGTSTYDGLSLAWASAEWLATKINAMTLFATHYFELTELPNLFTGLANVHLDAVEHG 754
Query: 528 NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVK--RMEINCLQ 585
+ + F +++G + YGL +A +AG+P +VI+ A+ + +V +
Sbjct: 755 DEIAFMHAVQEGAAN-KSYGLAVASLAGVPKSVIKKAKQKLQHLESGQVSVPATSTTVKE 813
Query: 586 YKQIQMLYHAAQRLICLKYSNQDEESIRHALQNL 619
Q+ ++ ++ L N D+ + R AL+ L
Sbjct: 814 EHQLSLIPEISEVEEALANVNPDDLTPRQALEEL 847
>sp|A1U2E8|MUTS_MARAV DNA mismatch repair protein MutS OS=Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8) GN=mutS PE=3 SV=1
Length = 874
Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 171/566 (30%), Positives = 282/566 (49%), Gaps = 43/566 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLEI + L G ++ +L ++ T T G R LR L +PL+D+E +
Sbjct: 266 LDAASRRNLEI----DTNLMG--GQQHTLAWVMDRTATAMGARELRRWLNRPLRDVERVR 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + L+ + L K + +R+L + +
Sbjct: 320 QRQQAVSALLDG--FHYEPVHDLLKRVGDIERILARVALRSARP---------------- 361
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
+ L+ A ALP L + LK S + + + E + A + +R +ID
Sbjct: 362 -RDLARLRDAFHALPELQEALKPVNSHHVVKLATVIGEYPELADLLERA--IIDNP---- 414
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G D LD R + + + ++ + RE + LK+ +N
Sbjct: 415 --PVVIRDGGVIA--EGFDEELDELRNISENAGQYLLDVETRERERTGISTLKVGYNRVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+Y+ I + P +I+ N T EL + SA R + +
Sbjct: 471 GYYIEISRAQ-SDQAPVDYIRRQTLKNAERFITPELKEFEDKALSAKSRALAREKGLYDD 529
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
+++ + E ++ L A+ L LD++ N FA ++ R+T P FT+ ++ GRHP
Sbjct: 530 VLETVAEQLAPLQDAAQALAELDVLSN-FAERATSL---RFTAPEFTDQPGFDVEEGRHP 585
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + ++ F+PNN+ + M+++TGPNM GKSTY++Q LI +LA G +VPA+ +
Sbjct: 586 VVEQLLDEPFVPNNLLMDTKRRMLVITGPNMGGKSTYMRQAALIALLAYTGSFVPANRAV 645
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
+ VDRIFTRMG+ D++ STFM EM ETA ++ N +E SL++MDE+GR TS+ DG +
Sbjct: 646 LGPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTFDGLS 705
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+ EHL +++ YT+FA+H L++LA + +H ++ + F + DGP
Sbjct: 706 LAWATAEHLAKNIRCYTLFATHYFELTQLADDLEHAVNVHLTATEHDDSIVFLHNVHDGP 765
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARS 566
YGL +A++AG+P VI A++
Sbjct: 766 AS-QSYGLQVAKLAGVPQDVIRNAKT 790
>sp|Q3JCL5|MUTS_NITOC DNA mismatch repair protein MutS OS=Nitrosococcus oceani (strain
ATCC 19707 / NCIMB 11848) GN=mutS PE=3 SV=1
Length = 863
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 195/636 (30%), Positives = 307/636 (48%), Gaps = 70/636 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D ++ RNLE+ E +L G S + +L +L T T G+RLLR L +PL+D +
Sbjct: 270 LDPSTRRNLELEE----SLSGDSGRN-TLIAVLDHTATAMGSRLLRRYLHRPLRDQTLLK 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPK---ETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R L L+ GLS L+ + + +R+L + +++ D+ +++
Sbjct: 325 QRQQALATLLEG-----GLSDVLQTLLRGIGDIERILSRVALR----SARPRDLVQFRQA 375
Query: 120 QTLISSI--ILLKTALDALPLLAKVLKDAQSF--LLANIYRSVCENEKYASIRKRIGEVI 175
L+ I LL+ D+L LL + +D F L + R++CEN
Sbjct: 376 LGLLPKIQESLLQLNRDSL-LLQSLQEDLGPFPNLHELLQRAICENP------------- 421
Query: 176 DEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK 235
P + R A+ G D LD R + + + L + RE K+P LK
Sbjct: 422 ---------PVLIRDGGVIAL--GFDSELDELRHLSGNAGQFLVKLEQRERERTKIPTLK 470
Query: 236 LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIR 295
+ +N G+YL I P + G + T EL + SA R
Sbjct: 471 VGYNKVHGYYLEITRAQAHQAPPDYIRRQTLKGAERYI-TPELKGFEDQVLSARERALAR 529
Query: 296 TEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLA 355
+ E L++ E + L A L LD++ N A T Y P ++ +
Sbjct: 530 EKALYEELLEQFMEPLPALRACANALAELDVLHN-LAERAKTL---EYVAPLLSDQPGIF 585
Query: 356 IDGGRHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
I+ GRHP++E ++ + F+PN++ + EA M+I+TGPNM GKSTY++Q LIV+LA IG +
Sbjct: 586 IERGRHPVVEQTLEDPFVPNDLTLHEARRMLIITGPNMGGKSTYMRQTALIVLLAHIGSF 645
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I +DRIFTR+G D+L STFM EM ETA ++ N +E SL+++DE+GR T
Sbjct: 646 VPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTETANILHNATEHSLVLLDEVGRGT 705
Query: 475 SSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533
S+ DG ++AW+ HL + +++ T+FA+H L+ L P V LH + F
Sbjct: 706 STFDGLSLAWAVVSHLANKVRSLTLFATHYFELTTLPECLPGVVNLHLTATEHKEHIVFL 765
Query: 534 FQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYK------ 587
+K+GP YGL +A +AG+P +I AR +++ +E N Q
Sbjct: 766 HAVKEGPASQ-SYGLQVAALAGVPQEIIAQAR--------QQLMELENNTWQKSINGGGP 816
Query: 588 QIQMLYHAAQR--LICLKYSNQDEESIRHALQNLKE 621
Q+ +L A + L+ + DE + R AL+ L E
Sbjct: 817 QLDLLAPPADHPAVQILQDLDPDELTPRQALEKLYE 852
>sp|Q47WN0|MUTS_COLP3 DNA mismatch repair protein MutS OS=Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) GN=mutS PE=3 SV=1
Length = 872
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 186/632 (29%), Positives = 316/632 (50%), Gaps = 51/632 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ + LH L T L +L + T G+RLL+ L PL+D+ +N
Sbjct: 281 LDAATRRNLELTQNLHGGLDNT------LAAILDKSSTPMGSRLLKRWLHFPLRDLTVLN 334
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + ++++ + Q L K + +R++ + D A+
Sbjct: 335 NRQNTVSDIIALD--LIAPIQPLLKGLGDIERIVSRIALGSARPR------DFAR----- 381
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ AL LP L LK + N ++ + + + + ++HA
Sbjct: 382 ------LRHALQQLPELQNELKSGLTESPTNYLATIAQQSQPMPQLEGL-------LVHA 428
Query: 183 RV---PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V P + R A G + LD+ R +E + L + +E + +LK+ +N
Sbjct: 429 IVENPPVLIRDGGVIA--PGYNNELDVLRDLSDGATEFLAQLEQREKERTGIHSLKVGYN 486
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
GF++ + + +P +I+ NN T EL + SA + +
Sbjct: 487 RVHGFFIEM-SRTAAVDVPDDYIRRQTLKNNERFITEELKQHEEKVLSAQSKFLALEKSL 545
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ L D + D++ L L++ + LD++ ++ Y +P E ++ID G
Sbjct: 546 YQELFDKVLPDLAQLQQLSQAIAELDVLTTFAERALALN----YVKPSLVEEPGISIDAG 601
Query: 360 RHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RH ++E + ND FI N + ++E M+I+TGPNM GKSTY++Q LIV+LA IGCYVPA
Sbjct: 602 RHVVVEQMTNDAFIANPVLLTEQRKMLIITGPNMGGKSTYMRQTALIVLLAHIGCYVPAD 661
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+TI +VDRIFTR+G D+L S STFM EM ETA ++ N +++SL+++DE+GR TS+ D
Sbjct: 662 NATIGLVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATDKSLVLLDEIGRGTSTYD 721
Query: 479 GFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G ++AW+C E L L KA+T+FA+H L+ LA + +H + ++ + F ++
Sbjct: 722 GLSLAWACAEMLALKTKAFTLFATHYFELTLLAGQISTLANVHLDAMEHDDNIVFMHAVQ 781
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQ 597
+G +GL +A++AG+P TVI+ A+ S + +++ + +Q + L A +
Sbjct: 782 EGAAS-KSFGLQVAQLAGVPKTVIKRAKQRLSELEQQQTPSILPAPIQNDAFEQLSFAPE 840
Query: 598 R---LICLKYSNQDEESIRHALQ---NLKESF 623
+ L ++ +E S R AL +LKE
Sbjct: 841 EHSVVTTLIDTDINELSPRQALDLLFSLKEQL 872
>sp|A9KG24|MUTS_COXBN DNA mismatch repair protein MutS OS=Coxiella burnetii (strain
Dugway 5J108-111) GN=mutS PE=3 SV=1
Length = 859
Score = 250 bits (638), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 178/577 (30%), Positives = 288/577 (49%), Gaps = 64/577 (11%)
Query: 3 IDATSVRNLEII-----EPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKD 57
IDA + RNLE+I E +HS W +L T T G+RLLR + +PL+D
Sbjct: 274 IDANTRRNLELITNLQGEEVHSLAW-----------LLDHTATPMGSRLLRRWINRPLRD 322
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
+ R + + L+ + + + LR + +R++ + +
Sbjct: 323 QILLQQRQNAVSTLLEKRN-YSEIYENLRHI-GDLERIVARIALRSARP----------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ L+ AL LP L + L + + N++ I+ +G + DE
Sbjct: 370 ------RDLMQLRQALGVLPTLHQQLTN------------LPLNKQLQEIKNNLG-LFDE 410
Query: 178 ------DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL 231
+ P V R A G D LD R ++ + + +L + RE K+
Sbjct: 411 LFRLLQKAIIENPPIVIRDGGVIA--DGYDAPLDELRNMSTNSHQFLIDLEQQERERTKI 468
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
LK+ +N G+Y+ I + + P+ +I+ N T EL + S+
Sbjct: 469 NTLKVGYNRIHGYYIEISRAQAK-QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSR 527
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
R + E L+D + E + L A + LD ++N+ A T + P F +
Sbjct: 528 ALAREKELYEQLLDTLIEKLIPLQQCASAIANLD-VLNTLAERADTL---NFNAPQFCDY 583
Query: 352 GPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I+ GRHPI+E++ D F+PN+ + E M+I+TGPNM GKSTY++Q LI +LA
Sbjct: 584 PIIKIEAGRHPIVENVMTDPFMPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAY 643
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + + +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+
Sbjct: 644 IGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEV 703
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++A++C +L + LKA+ +FA+H L+ LA+ P VK +H V +
Sbjct: 704 GRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHLDAVEHEEK 763
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+ F L++GP + YGL +A++AG+P +VI+ AR
Sbjct: 764 IIFLHALREGPAN-KSYGLQVAQLAGIPRSVIQHARQ 799
>sp|A9KL10|MUTS_CLOPH DNA mismatch repair protein MutS OS=Clostridium phytofermentans
(strain ATCC 700394 / DSM 18823 / ISDg) GN=mutS PE=3
SV=1
Length = 932
Score = 250 bits (638), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 176/583 (30%), Positives = 298/583 (51%), Gaps = 47/583 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID++S RNLE+ E L K+ SL +L TKT G R+LR+ + QPL ++
Sbjct: 267 MVIDSSSRRNLELTETLRE-----KQKRGSLLWVLDKTKTAMGARMLRSFVEQPLITMDE 321
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I+ R D + EL N +E R ++ + +++ K+ + KS
Sbjct: 322 ISARYDAISELNDN------------VITREEIREYLNYIYDLERLMGKI-----SYKSA 364
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I ++L LP + +L +S LL I+ + + +ID +
Sbjct: 365 NP-RDLIAFASSLSMLPHIKYLLSTCESALLKQIHEEM-------DALDDLQNLIDRSI- 415
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A P + ++ IK G +D R++ + + L K +E+ + NLK+ +N
Sbjct: 416 -AEEPPIG-IKEGGIIKEGFHTEVDTLRKAKTEGKVWLAELEAKEKEQTGIKNLKVKYNR 473
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+YL + + +P +I+ N +T EL L + +A +
Sbjct: 474 VFGYYLEVTNS-YANLVPENWIRKQTLSNAERYTTPELKELEDKILNAEDRLFSLEYDLF 532
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ D I E+V + A+ + +D +FA +++ RP NG + I GR
Sbjct: 533 AEIRDQIAEEVKRIQKTAKAVANID----AFASLAYVAERNQFIRPELNTNGTIDIKEGR 588
Query: 361 HPILES-IHND-FIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E I ND F+ N+ ++ A + I+TGPNM+GKSTY++Q LIV++AQ+G +VPA
Sbjct: 589 HPVVEQMIPNDMFVSNDTYLDNAEKRISIITGPNMAGKSTYMRQTALIVLMAQVGSFVPA 648
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
++ I +VDRIFTR+G D+L S STFM EM E A +++N ++ SL+++DE+GR TS+
Sbjct: 649 SYANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATKNSLLILDEIGRGTSTF 708
Query: 478 DGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG +IAW+ EH+ + L A T+FA+H L+EL V ++ + ++ D F
Sbjct: 709 DGLSIAWAVIEHISNTSMLGAKTLFATHYHELTELEGKISGVN--NYCIAVKEQGEDIVF 766
Query: 535 QLK-DGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
K G YG+ +A++AG+P++V+ AR I ++++ ++
Sbjct: 767 LRKIIGGGADKSYGIQVAKLAGVPNSVLVRAREIVDQLSENDI 809
>sp|B9MJU0|MUTS_CALBD DNA mismatch repair protein MutS OS=Caldicellulosiruptor bescii
(strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=mutS PE=3
SV=1
Length = 863
Score = 249 bits (637), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 196/609 (32%), Positives = 305/609 (50%), Gaps = 81/609 (13%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
+ ID + RNLE+ E + ++K SL +L TKT G+RLL+ + +PL DI
Sbjct: 254 LQIDINTKRNLELTESIIQ-----RSRKNSLLGILDQTKTSMGSRLLKKWIERPLIDIIE 308
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++EL SN + + L + + +R+ F +K NAK
Sbjct: 309 INKRLDSVEELKSNYSTLVQVEELLSRM-YDIERLSSKFAYKNV----------NAK--- 354
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
++ LK +++ LP L + L S LL IY + + I I I+ED
Sbjct: 355 ----DLLSLKKSIEVLPTLKQFLSSFDSELLKEIYEGL---DTLEDIYALIDSSINED-- 405
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A V ++ IK G + +D R ++ E + K R + NL++ +N
Sbjct: 406 -APVSL----KEGGIIKEGFNEEVDRLRNISKNSKELLVEYEEKERNLTGIKNLRIGYNK 460
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE--------- 291
G+Y+ + + +P +I+ N T EL L A +
Sbjct: 461 VFGYYIEVTKSNY-SLVPDRYIRKQTLANAERYITEELKKLEDEILGADQKLIELEYQLF 519
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVD-RYTRPHFTE 350
C IR I EA ++ I++ S + L +VLC SFA +D Y RP+
Sbjct: 520 CEIRDRI--EAQIERIQKTASNIANL-DVLC-------SFARI----AIDNEYVRPNVYL 565
Query: 351 NGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVI 407
+ I GRHP++E + +FIPN+ + +A N V I+TGPNM+GKSTY++QV LIVI
Sbjct: 566 GDRIYIKNGRHPVVEKMIGRGNFIPNDTELDQAENRVLIITGPNMAGKSTYMRQVALIVI 625
Query: 408 LAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467
+AQ+GC+VPA + I VVD+IF+R+G D++ S STFM EM E A +++N + +SLI+
Sbjct: 626 MAQMGCFVPADEAHIGVVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIF 685
Query: 468 DELGRATSSSDGFAIAWSCCEHLLS---LKAYTIFASHMENLSELATIYPNVKILHFYVV 524
DE+GR TS+ DG +IAW+ E++ + A T+FA+H L+EL P VK
Sbjct: 686 DEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVK------- 738
Query: 525 IRNNRLDFKFQLKD--GPRHV------PHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
N R+D K + K+ R + YG+ +A +AG+P V++ A I ++ + ++
Sbjct: 739 --NYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEEILKQLEEADI 796
Query: 577 KRMEINCLQ 585
R I L+
Sbjct: 797 NRKNIRKLR 805
>sp|B2V1M2|MUTS_CLOBA DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Alaska E43 / Type E3) GN=mutS PE=3 SV=1
Length = 941
Score = 249 bits (635), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/628 (30%), Positives = 318/628 (50%), Gaps = 55/628 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID S RNLE+ E + KK SL +L + T G R LR + +PL +
Sbjct: 259 MTIDGNSRRNLELTESIRE-----KTKKGSLLWVLDKSATSMGGRTLRKWIDEPLIVKDE 313
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL ++E+ ++ G ++ LR KE + +++ K+ + + NAK
Sbjct: 314 IEKRLSGVEEVFNS----IGFNEDLRSALKE--------IYDIERIVGKISNKNVNAK-- 359
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
++ LK++LD LP + K+LKD S LL Y ++ E +R + + I ED
Sbjct: 360 -----DLLSLKSSLDKLPCIKKLLKDTSSELLKGYYENLDE---LIDVRDLLNDSIKED- 410
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + ++ IK G + L+D R+S E + L N+ RE + +LK+ +N
Sbjct: 411 -----PGLG-LKEGNIIKDGYNNLVDELRQSKLHGKEWIAALENREREFTGIKSLKVGYN 464
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ I + +I+ N T EL + + + E I E
Sbjct: 465 KVFGYYIEISKSNYNSIPEGRYIRKQTLANAERFITEELKVMEDK-ILGSEEKLINLEYS 523
Query: 300 LEALV-DAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR-YTRPHFTENGPLAID 357
+ + D I +++S L A ++ LD I T++ ++ Y +P NG + I
Sbjct: 524 IFVEIRDKIEKEISRLKKSARIISDLDGI-----STLALVALENDYIKPEINTNGLIKIT 578
Query: 358 GGRHPILESI--HNDFIPNNIFISEA-ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414
GRHP++E + DF+ NN +++ ++++TGPNM+GKSTY++QV LI ++AQ+G +
Sbjct: 579 DGRHPVVEKVIGKGDFVSNNTALNQTDKELLLITGPNMAGKSTYMRQVALITLMAQMGSF 638
Query: 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474
VPA + I + D+IFTR+G D+L STFM EM E + +++N + SL+++DE+GR T
Sbjct: 639 VPATSANISICDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATSNSLVLLDEVGRGT 698
Query: 475 SSSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531
S+ DG +IAWS E++ +L+ T+FA+H L +L I P VK V + +
Sbjct: 699 STYDGLSIAWSVIEYITKNKNLRCKTLFATHYHELVKLEGILPGVKNYSVAVKKLKDSVV 758
Query: 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQM 591
F ++ +G YG+ +A++AGLP VI AR I + K +IN L M
Sbjct: 759 FLRKIVEGGAD-ESYGIEVAKLAGLPENVINRAREILEDLESKNT--FDINKLS--SCSM 813
Query: 592 LYHAAQRLICLKYSNQDEESIRHALQNL 619
+ + + + N++++ I +A QN+
Sbjct: 814 VSNNTKEIAADSIKNEEDKVISNA-QNI 840
>sp|B1KPS7|MUTS_SHEWM DNA mismatch repair protein MutS OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=mutS PE=3 SV=1
Length = 858
Score = 249 bits (635), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 181/566 (31%), Positives = 286/566 (50%), Gaps = 45/566 (7%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLE+ L G SN +L +L T T G+R+L+ + +PL+D + I
Sbjct: 271 LDAATRRNLELTMNLQG---GHSN---TLATVLDNTTTPMGSRMLQRWIHEPLRDRQRIE 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R L+E++ N L+ L L+ + +R+ + NA+
Sbjct: 325 ARQSALEEILEN-GLYDELHPLLKSL-GDVERITARLALR------------NARPR--- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE-NEKYASIRKRIGEVIDEDVLH 181
LK AL LP + ++L QS L ++ R + E E+ A + I +D
Sbjct: 368 --DFSRLKHALAILPEIQQILARCQSAHLQSLARIISEFPEELALLDSAI---VDNP--- 419
Query: 182 ARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNR 241
P + R +K G + LD R ++ + L + +E + LK+ +N
Sbjct: 420 ---PMLIR--DGGVLKPGYNAELDQWRDLSQGATDYLAELEAREKEATGISTLKVGYNRV 474
Query: 242 QGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE 301
G+Y+ + ++ +P ++ + N EL + S+ G+ + +
Sbjct: 475 HGYYIEVSRRE-SDLVPLSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEKQLWD 533
Query: 302 ALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRH 361
L D I + L L A+ LD++ N FA T Y RP T+ + I+ GRH
Sbjct: 534 QLFDLILPQLHELQLFAQGAAELDVLAN-FAERADTL---NYQRPVLTDIPGIQIESGRH 589
Query: 362 PILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS 420
P++E + FI N + +S A M+IVTGPNM GKSTY++QV LI ++A IGCYVPA +
Sbjct: 590 PVIEQVSQTPFIANPVTLSPARKMLIVTGPNMGGKSTYMRQVALITLMAHIGCYVPAQSA 649
Query: 421 TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480
TI VDRIFTR+G D+L S STFM EM ETA ++ N + +SL++MDE+GR TS+ DG
Sbjct: 650 TIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPKSLVLMDEIGRGTSTYDGL 709
Query: 481 AIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDG 539
++AWS E+L ++A T+FA+H L++L + NV +H + + + F ++DG
Sbjct: 710 SLAWSAAEYLAQKIEAMTLFATHYFELTQLPELISNVANVHLDAIEHGDTIVFMHAVQDG 769
Query: 540 PRHVPHYGLLLAEVAGLPSTVIETAR 565
YGL +A +AG+P+ VI A+
Sbjct: 770 AAS-KSYGLQVAALAGVPNPVILAAK 794
>sp|A6W1Q6|MUTS_MARMS DNA mismatch repair protein MutS OS=Marinomonas sp. (strain MWYL1)
GN=mutS PE=3 SV=1
Length = 883
Score = 249 bits (635), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 184/586 (31%), Positives = 295/586 (50%), Gaps = 61/586 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
ID + RNLEI L GTSN +L +L T G+RLL+ L P++D+ I
Sbjct: 272 IDGATRRNLEIDINLTG---GTSN---TLVEVLDKCSTPMGSRLLKRWLHTPIRDLNEIQ 325
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + EL N Q + L+K + +R+L + +
Sbjct: 326 ARQQVVAELQQN-QSYNAFEAPLKKV-GDLERILSRVALRSARP---------------- 367
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L+ AL+A P + +L +A S L + ++R +I E + A
Sbjct: 368 -RDLLRLRFALEAAPEINGLLANATSERLQEL-----------NLRILAQPIITETLAKA 415
Query: 183 RV---PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
V P V R FA G D LD + ++ + + + + +LK+ FN
Sbjct: 416 LVENPPSVVRDGGIFA--KGYDEELDELLALSTNATDFLAEMERSEKARTGISSLKVGFN 473
Query: 240 NRQGFYLSIP--HKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTE 297
G+Y+ I H D + P +I+ N T EL + + SA + R +
Sbjct: 474 RVHGYYIEISRLHSD---QAPVEYIRRQTLKNAERFITPELKAFEDKALSAKSKSLAREK 530
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
EAL++ + E + L ++ L LD ++N+FA + +T P G + I
Sbjct: 531 ELYEALLEQLNEILGELQTTSQALAQLD-VLNNFAERANAL---SFTCPELHNRGGIQIV 586
Query: 358 GGRHPILES-IHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++ES I F+PN++ +++ +++++TGPNM GKSTY++Q+ LI +LA GC+VP
Sbjct: 587 GGRHPVVESVISEPFVPNDLDLNDKRSLLMITGPNMGGKSTYMRQIALITLLAHTGCFVP 646
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A ++I VVDRIFTRMG+ D+L STFM EM ETA ++ N S+ SL++MDE+GR TS+
Sbjct: 647 AESASISVVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNASKNSLVLMDEVGRGTST 706
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ ++L + LK Y +FA+H L+ LA N +H + + F +
Sbjct: 707 FDGLSLAWAAVDYLANKLKCYVLFATHYFELTTLADQLENAANVHLTATEYEDEIVFLHK 766
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEI 581
+ +GP YGL +A++AG+P VI A K+++K +E+
Sbjct: 767 VHEGPAS-QSYGLQVAQLAGVPRDVIGHA--------KQKLKELEV 803
>sp|Q0A8K3|MUTS_ALHEH DNA mismatch repair protein MutS OS=Alkalilimnicola ehrlichei
(strain MLHE-1) GN=mutS PE=3 SV=1
Length = 878
Score = 249 bits (635), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 176/568 (30%), Positives = 280/568 (49%), Gaps = 49/568 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S RNLE+ L + + +L +L +T G+RLLR L +PL+D T+
Sbjct: 271 IDAASRRNLELERNL------SGGTEHTLASVLDSTVNAMGSRLLRRWLNRPLRDRTTLQ 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCF---KPKKVTSKVLDVDNAKKS 119
R ++ LM+ E L L + LR + +R+L +P+ +T
Sbjct: 325 ARHQAVEILMA-ESLTEALRRQLRGI-SDVERILARVALGSARPRDLTG----------- 371
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ L LP + L A + L ++ E+ + +R ++D+
Sbjct: 372 ---------LRETLARLPDIQATLTGAGAPRLVDLAAQCGEHPQTLDHLRRA--LVDQP- 419
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R A G D LD R + + L + RE + LK+ +N
Sbjct: 420 -----PVVIRDGGVIA--EGYDATLDELRTLSENADNYLLELEQRERERTGISTLKVGYN 472
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+Y+ + +P+ +++ EL + + SA + R ++
Sbjct: 473 RVHGYYIEVTRAQADA-VPAEYVRRQTLKGVERYILPELKAFEDKVLSAREKALAREKVL 531
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
E L+ ++ D++ L A L LD + +FA + +D Y+RP + L I+ G
Sbjct: 532 YEQLLASLASDLAPLQDTAAALAELDTLA-AFAE--RAQALD-YSRPELRDGAGLRIEAG 587
Query: 360 RHPILE-SIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E S+ F+PN++ + + M+I+TGPNM GKSTY++QV LI ++A IG +VPA
Sbjct: 588 RHPVVEYSLDGPFVPNDLTLDDRRRMLIITGPNMGGKSTYMRQVALITLMAHIGSFVPAR 647
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+++ VDRIFTR+G D+L STFM EM ETA ++ N + +SL++MDE+GR TS+ D
Sbjct: 648 AASLGPVDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTFD 707
Query: 479 GFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLK 537
G A+AW+ E L +AYT+FA+H ++ L P +H V R+ F +K
Sbjct: 708 GLALAWATAERLARDQRAYTLFATHYFEMTALPEQCPGASNVHLDAVEHGERIVFLHAVK 767
Query: 538 DGPRHVPHYGLLLAEVAGLPSTVIETAR 565
GP YGL +A +AG+P V+E AR
Sbjct: 768 PGPASQ-SYGLQVAALAGVPGPVLEAAR 794
>sp|Q1QZX5|MUTS_CHRSD DNA mismatch repair protein MutS OS=Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=mutS
PE=3 SV=1
Length = 859
Score = 248 bits (634), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 179/588 (30%), Positives = 287/588 (48%), Gaps = 67/588 (11%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
IDA S RNLEI L G N +L +L TT T G+R L+ L +PL+DI I
Sbjct: 267 IDAASRRNLEIDTNLGG---GFDN---TLASVLDTTATAMGSRQLKRWLNRPLRDIAQIQ 320
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCH---FCFKPKKVTSKVLDVDNA 116
+R + CL + + L L K + +R+L + +P+ + +++ D NA
Sbjct: 321 SRQAAVQCLIDADRHATLRDAL-----KAIGDIERILARVALYSARPRDL-ARLRDALNA 374
Query: 117 KKSQTLISSIILLKTALDAL-------PLLAKVLKDAQSFLLANIYRSVCENEKYASIRK 169
+ + + TA+DAL P LA+ L R++ +N
Sbjct: 375 LPALEHDLAELDEGTAIDALKHHIRPYPELAETLS-----------RALVDNP------- 416
Query: 170 RIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREEL 229
P V R I G D LD R + + L + RE
Sbjct: 417 ---------------PVVIRDGGV--IGTGFDAELDEYRGLAEHAGDYLVELETRERERT 459
Query: 230 KLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAA 289
L LK+ +N G+Y+ IP + + P+ +I+ N EL + SA
Sbjct: 460 GLVGLKVGYNRVHGYYIEIPRAQAR-EAPAEYIRRQTLKNAERFIIPELKEFEDKALSAK 518
Query: 290 GECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT 349
R ++ + L++ + D+ L A L LD++ ++ + RP +
Sbjct: 519 SRALAREKLLYDGLLETLNVDLQALQGTARALATLDVLACFAERALALD----FVRPRLS 574
Query: 350 ENGPLAIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408
+ L I GGRHP++E + + F+PN++ + E ++++TGPNM GKSTY++Q LI +L
Sbjct: 575 DQPGLRIRGGRHPVVEHVSDHPFVPNDLMLDETRRLLVITGPNMGGKSTYMRQAALIALL 634
Query: 409 AQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMD 468
A G VPA + I VDRIFTR+G+ D+L STFM EM ETA ++ N +E SL++MD
Sbjct: 635 AHTGSCVPADEAEIGPVDRIFTRIGSSDDLAGGRSTFMVEMTETATILHNATEHSLVLMD 694
Query: 469 ELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
E+GR TS+ DG ++AW+ EHL+ +A+T+FA+H ++ L Y +V +H +
Sbjct: 695 EIGRGTSTFDGLSLAWASAEHLVERRAFTLFATHYFEMTALTEPYDSVANVHLTAAEHRD 754
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEV 576
+ F ++++GP YGL +A++AG+P V+ AR + + ++EV
Sbjct: 755 GIVFMHRVEEGPAS-QSYGLQVAQLAGVPPRVVARAREKLATLEQQEV 801
>sp|Q60BA1|MUTS_METCA DNA mismatch repair protein MutS OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=mutS PE=3
SV=1
Length = 854
Score = 248 bits (634), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 177/579 (30%), Positives = 284/579 (49%), Gaps = 49/579 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKR-SLFHMLKTTKTIGGTRLLRANLLQPLKDIE 59
+ +DA S RNLE+ W S + +L +L T + G RLLR L QPL+D
Sbjct: 267 IGLDAASRRNLELD-------WHPSGRAEFTLLGLLDRTGSAMGGRLLRRWLHQPLRDRT 319
Query: 60 TINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
T+ R + EL+++ + F L LR + +R+ K +++ D+
Sbjct: 320 TLMLRQQAIGELLADRR-FEALHDLLRGV-GDVERIAARIALK----SARPRDLST---- 369
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
L+ L ALP L + L +S LL + + + + + + +R ++D+
Sbjct: 370 ---------LRQTLKALPALRETLHGTESALLGELTGRLVDQPELSELLQRA--IVDDP- 417
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + R A G LD R + + L K RE L LK+ +N
Sbjct: 418 -----PQLIRDGGVIAE--GYHAELDELRLLSENADRFLAELEEKEREHTGLGALKVGYN 470
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
QGFY+ +P + P +I+ N T EL + + SA +
Sbjct: 471 RVQGFYIELPRSQAD-RAPVHYIRRQTLKNAERYVTPELKAFEDKVLSARERALSCEKAL 529
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR--YTRPHFTENGPLAID 357
EAL++ + + L A L LD++ N + DR + P + + I
Sbjct: 530 YEALLEILGRWLPALQDCAAGLAELDVLANL------AERADRLNWVAPRLVDAPGIRII 583
Query: 358 GGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GGRHP++E + F+PN++ M+++TGPNM GKSTY++Q +IV++A IG +VP
Sbjct: 584 GGRHPVVEQVGGTPFVPNDLAFGPNRRMLVITGPNMGGKSTYMRQAAIIVLMAHIGSHVP 643
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRI+TR+G D+L STFM EM ETA ++ N + SL++MDE+GR TS+
Sbjct: 644 AAEAEIGPIDRIYTRIGASDDLAGGRSTFMVEMTETANILNNATAESLVLMDEIGRGTST 703
Query: 477 SDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ EHL +AYT+FA+H L+ LA +V +H V +++ F
Sbjct: 704 FDGLSLAWASAEHLARETRAYTLFATHYFELTALAEECEDVGNVHLDAVEHGDKVVFLHA 763
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574
+++GP YGL +A +AG+P TVI+ AR ++ ++
Sbjct: 764 VREGPASQ-SYGLQVAALAGVPQTVIDNARRKLEQLERQ 801
>sp|Q187T6|MUTS_CLOD6 DNA mismatch repair protein MutS OS=Clostridium difficile (strain
630) GN=mutS PE=3 SV=2
Length = 947
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 184/588 (31%), Positives = 304/588 (51%), Gaps = 57/588 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M +D + NLE+ + + + KK SL H+L T T G RLLR + +PL +
Sbjct: 265 MVLDMFTRTNLELTQTIRG-----NKKKGSLLHVLDKTSTAMGGRLLRKYVEEPLINKSK 319
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I RLD ++E+ + L L+ L+ + +R+ F+ +VT K L
Sbjct: 320 IENRLDVIEEIKDDFILREDLNDILKNIY-DIERICGKIAFE--RVTPKEL--------- 367
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRS-VCENEKYASIRKRIGEVIDEDV 179
I LK +++ LP LKD + A I + V E +K I I E I E+
Sbjct: 368 ------IHLKNSIEKLP----NLKDTINLSNAKILKEYVSEMDKLDDIYNLIDEAILEE- 416
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK L R + + V + N+ RE+ + +LK+ FN
Sbjct: 417 -----PTIT-IKDGNIIKSDFSDELKELREISKNGAFLVKEIENREREKTGVKSLKIGFN 470
Query: 240 NRQGFYLSIPHKDI-QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRT-- 296
G+Y+ I + Q KL T+I+ N T EL + K E I++
Sbjct: 471 KVFGYYIEITKANFKQAKLDETYIRKQTLSNAERYITPELKE--IEEKILHAEEKIKSLE 528
Query: 297 -EICLEALVDAIREDVSVLTLLAEVLCLLDMIVN--SFAHTISTKPVDRYTRPHFTENGP 353
EI +E + D I +++ + +A+ + +D+ V+ + AH ++ Y +P EN
Sbjct: 529 YEIFVE-IRDTIYKNIDRIQKVAKTIANIDVFVSLATVAH------INNYVKPAINENNK 581
Query: 354 LAIDGGRHPILESI--HNDFIPNNIFISEAANMV-IVTGPNMSGKSTYLQQVCLIVILAQ 410
L I GRHP++E+I +F+PN+ +++ N++ I+TGPNMSGKSTY++Q +I ++A
Sbjct: 582 LDIRNGRHPVVENIVGEENFVPNDTYLNRGENIINIITGPNMSGKSTYMRQTAIIALMAH 641
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + I ++DRIFTR+G D+L STFM EM E + +++N +ERSL+++DE+
Sbjct: 642 IGSFVPAESADIPILDRIFTRVGASDDLSQGQSTFMVEMNEVSLILKNATERSLVILDEI 701
Query: 471 GRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++AWS E++ +++ T+FA+H L++L + VK ++ + ++ +
Sbjct: 702 GRGTSTYDGISLAWSIVEYIQKNIRCKTLFATHYHELTDLEEEFKEVK--NYSIAVKEDG 759
Query: 530 LDFKFQLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEV 576
F K P+ YG+ +A++A LP VIE A+ I + K V
Sbjct: 760 EGIIFLRKIIPQGADKSYGIYVAKLAKLPDEVIERAKYILKDLEKNHV 807
>sp|Q2SBR5|MUTS_HAHCH DNA mismatch repair protein MutS OS=Hahella chejuensis (strain KCTC
2396) GN=mutS PE=3 SV=2
Length = 860
Score = 246 bits (628), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 170/580 (29%), Positives = 297/580 (51%), Gaps = 51/580 (8%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLEI L + + +L ++ + T G+R+LR L +PL+ E +
Sbjct: 271 LDAASRRNLEIDVNL------AGDYRHTLAWVMDKSATAMGSRMLRRWLNRPLRSQEEVR 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
R + + EL+ + Q F L + L++ +++R+L + +++ D+ + + TL
Sbjct: 325 QRQNAIKELLEDYQ-FEALHETLKQI-GDSERILSRVALR----SARPRDLARLRDTLTL 378
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
LP L K +++ L + + V E + I + I+E+
Sbjct: 379 -------------LPDLQKQMEELNDTHLRRLAKQVSE---FPDIADLLSRAIEENP--- 419
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R ++ G D LD R + + + + + +E +L +LK+ +N
Sbjct: 420 --PVVIR--DGGVLRQGFDEELDELRSISENAGDYLLEIEKREKERTQLSSLKVGYNRVH 475
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEA 302
G+++ + + + P+ +I+ N T EL + + SA R ++ +
Sbjct: 476 GYFIEL-SRTQSDQAPADYIRRQTLKNAERFITPELKTFEDKALSAKSRALSREKMLYDQ 534
Query: 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHP 362
+++ I E ++ L A L LD++ N ++ V P T+ L I+GGRHP
Sbjct: 535 ILETIVEQLAPLQDSARALSELDVLSNFAERALTLNLVC----PDLTDEHMLHIEGGRHP 590
Query: 363 ILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST 421
++E + D F+PN++ + + M+I+TGPNM GKSTY++Q IVILA G +VPA
Sbjct: 591 VVEQVSQDPFVPNDLNLQDKHRMLIITGPNMGGKSTYMRQTACIVILAYCGSFVPAAKVV 650
Query: 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFA 481
I +DR+FTRMG+ D++ STFM EM ETA ++ + +SL++MDE+GR TS+ DG +
Sbjct: 651 IGPIDRVFTRMGSSDDIAGGRSTFMVEMTETANILHYATRQSLVLMDEVGRGTSTFDGLS 710
Query: 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540
+AW+C EHL ++A+T+FA+H L+ L + NV +H N+ + F + +GP
Sbjct: 711 LAWACAEHLAREIQAFTLFATHYFELTALPKTHANVANVHLTATEHNDSIVFLHTVHEGP 770
Query: 541 RHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
YG+ +A++AG+P VI A +K++K++E
Sbjct: 771 AS-KSYGIQVAQLAGVPPQVINQA--------QKQLKQLE 801
>sp|Q97I19|MUTS_CLOAB DNA mismatch repair protein MutS OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=mutS PE=3 SV=1
Length = 869
Score = 246 bits (628), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 180/587 (30%), Positives = 312/587 (53%), Gaps = 46/587 (7%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
++ID S RNLE+ E L +KK SL +L T T G R +R + +PL D E
Sbjct: 260 LSIDINSRRNLELTETLKD-----KSKKGSLLWVLDKTSTAMGGRQIRKWIERPLIDDEK 314
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN RLD ++E+++N L + L++ + +R+ K++SK + NAK+
Sbjct: 315 INLRLDAVEEMLTNVSYNEDLKELLKQVY-DIERL-------AGKISSKSV---NAKE-- 361
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
+I L+ +++ LP + K++K+ S LL N+ ++ + I K + E I+++
Sbjct: 362 -----MISLRGSIEKLPAIKKLIKNFNSELLVNMENAL---DDLGDIYKLLYESINDN-- 411
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
P ++ ++ IK G + +D R + + + +L N RE + +LK+ +N
Sbjct: 412 ----PSLS-IKEGNIIKEGYNKDIDELRLAKSHGKQWIASLENTEREVTGIKSLKVSYNK 466
Query: 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICL 300
G+Y+ I ++ +I+ N+ T EL + + A + +
Sbjct: 467 VFGYYIEITKSNLNLVPEGRYIRKQTLTNSERYITPELKEMEEKILGAEEKLVLLEYNVF 526
Query: 301 EALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGR 360
+ + I +++ + A++L LD I SFA + Y +P +G L I GR
Sbjct: 527 CEIRERIEKEIDRIKGSAKILSELDCIC-SFADVARE---NNYCKPVIKRDGTLVIKEGR 582
Query: 361 HPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPA 417
HP++E + +F+ N+ I+ + N M+++TGPNM+GKSTY++QV LIV++AQIGC+VPA
Sbjct: 583 HPVVEKVIASGNFVANDTVINNSDNVMMLITGPNMAGKSTYMRQVGLIVLMAQIGCFVPA 642
Query: 418 HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSS 477
+ I + D+IFTR+G D+L + STFM EM E + +++N ++ SLI++DE+GR TS+
Sbjct: 643 SAAEISICDKIFTRIGASDDLNAGKSTFMVEMWEVSHILKNATKNSLILLDEVGRGTSTY 702
Query: 478 DGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534
DG +IAWS E++ +LK T+FA+H L++L +K ++ + ++ D F
Sbjct: 703 DGLSIAWSVIEYICKSENLKCKTLFATHYHELTKLEGEIEGLK--NYSIAVKKVNDDIIF 760
Query: 535 QLKDGPRHVPH-YGLLLAEVAGLPSTVIETARSITSRITKKEVKRME 580
K + YG+ +A++AGLP V+ AR I + + + K E
Sbjct: 761 LRKIISKGADESYGIEVAKIAGLPEEVLVRAREILKDLEEAKPKTAE 807
>sp|P61667|MUTS_GEOSL DNA mismatch repair protein MutS OS=Geobacter sulfurreducens
(strain ATCC 51573 / DSM 12127 / PCA) GN=mutS PE=3 SV=1
Length = 871
Score = 246 bits (627), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 189/587 (32%), Positives = 297/587 (50%), Gaps = 61/587 (10%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+D +S RNLE+ +A G ++ SL +L T T G R L+ + PL IE IN
Sbjct: 270 LDESSRRNLEL-----NATIGDGKRRGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKIN 324
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD ++EL+++ + G+ R + +++ ++ + K
Sbjct: 325 ERLDAVEELVADAEFRQGV------------RAALDGVYDLERLNGRISLASASAKD--- 369
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
++ L+ +L LP L +L A S LLA + + + A + + IG I D
Sbjct: 370 ---LVALRASLVRLPSLIALLTPAASTLLARLRDGI---DLLADVEELIGRGIVPDP--- 420
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
PFV R + I G LD R + + L + + + +LK+ +N
Sbjct: 421 --PFVLR--EGGIIAQGYHSELDELRSISREGKGFIARLEAQEKARTGISSLKVRYNKVF 476
Query: 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLE- 301
G+Y+ + ++ +P +I+ N T EL K E I + LE
Sbjct: 477 GYYIEVTKSNLSA-IPDDYIRRQTLANAERFITPELKEYE--EKVLGAEDRI---VELEY 530
Query: 302 ALVDAIREDVSV----LTLLAEVLCLLDMI--VNSFAHTISTKPVDRYTRPHFTENGPLA 355
AL IR+ V+ + A+ L LD++ + AH RY RP E +
Sbjct: 531 ALFQDIRQRVAAQGERIARTADRLATLDVLAALADVAHD------HRYVRPTVDEGDAIV 584
Query: 356 IDGGRHPILESIHND--FIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIG 412
+ GGRHP++E+++ F+ N++ + N +VI+TGPNM+GKST+++QV LIV++AQ G
Sbjct: 585 VTGGRHPVVEALNRSERFVANDVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTG 644
Query: 413 CYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472
+VPA ++I VVDRIFTR+G DNL STFM EM ETA +++N + RSL+V+DE+GR
Sbjct: 645 SFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGR 704
Query: 473 ATSSSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
TS+ DG +IAW+ E+L + A T+FA+H L+ELA VK + V N++
Sbjct: 705 GTSTFDGVSIAWAVAEYLHDTERCAAKTLFATHYHELTELAVTRNRVKNCNVAVKEWNDQ 764
Query: 530 LDFKFQL-KDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575
+ F ++ + G H YG+ +A +AGLP VIE A+ I + K E
Sbjct: 765 VIFLRKIVEGGASH--SYGIQVARLAGLPQEVIERAKEILHNLEKGE 809
>sp|O94065|MSH4_CANAX MutS protein homolog 4 OS=Candida albicans GN=MSH4 PE=3 SV=1
Length = 803
Score = 245 bits (625), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 188/632 (29%), Positives = 324/632 (51%), Gaps = 36/632 (5%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +VR+LE+++ L GT+ L+ L T G R+LR ++LQP +
Sbjct: 192 MLIDTCTVRDLELVDSLSET--GTT-----LYSFLNCCLTKMGMRILRTSILQPSTHENS 244
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
I R + L EL+++E + L K + ++V F +P+ + S+ +++N
Sbjct: 245 IILRSESLQELINDEDALISIRSSL-KHTCDLEKVFSTF-LEPRGLLSQEQEINN----- 297
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVL 180
IILLKT L ++ K +++ S LL + + + E+E + I E I D
Sbjct: 298 -----IILLKTVLQNTFVIRKSIQNVSSHLLVQV-KQILEHENVQHLLAIINEYIRNDCQ 351
Query: 181 HARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240
A Q+ A+K G++GLLD++RR E V L K EEL++ ++ F
Sbjct: 352 WANNSTELANQRANAVKSGVNGLLDVSRRIRETLLEEVSELVAKLSEELEIF-MEYRFEI 410
Query: 241 RQGFYLSIPHKDIQ-GKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
+GF++ I + LP I VK I C+T+EL + R E
Sbjct: 411 SRGFFIKIKGNNTDINSLPEVLINRVKKRKTIECTTIELMKQSSRYNDIVSEITTLNSTI 470
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
+ + +I +L +++E + LD++ SFA+ S + D YT P F + + I
Sbjct: 471 IHDMYTSINSYTPILLMVSEAIGTLDLLC-SFAYFTSLQK-DSYTCPEFAK--EVTIMRS 526
Query: 360 RHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
HPIL +++F+ NN + E + + ++TG NMSGKS YL+Q+ +VI+AQ+GC+VPA
Sbjct: 527 LHPILGGNNSNFVANNYSCNHELSRIHVITGANMSGKSVYLRQIAYLVIMAQMGCFVPAE 586
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
++ +R+ + +++R+ + DN++ N+S+F EM ETA ++ + SLI++DELGR +S +D
Sbjct: 587 YARMRIFNSLYSRISS-DNVDINASSFSKEMSETAVILNDSDGDSLILIDELGRGSSLTD 645
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
GF+I + E L+ +A I +H +++++ V H V N +L+ K+ L
Sbjct: 646 GFSICLAILEDLICKEATVITTTHFRDIAQVLANKSCVVTAHMQTVETNGQLEMKYNLVL 705
Query: 539 GPRHVPHYGLLLAEVAG-LPSTVIETARSITSRI-TKKEV---KRMEINCLQYKQIQMLY 593
G + YG+ AEV+ LP +IE ++ + + + ++K V K +++ + K + LY
Sbjct: 706 GRNDIVGYGIRFAEVSNLLPQELIEDSKVVANILRSRKPVHGDKELKLLSRRRKLVLELY 765
Query: 594 HAAQRLICLKYSNQDEESIRHALQNLKESFID 625
A + L N D LQ L+ F++
Sbjct: 766 FALNYISKL---NCDMNYKMQLLQTLQSKFVE 794
>sp|Q83CQ2|MUTS_COXBU DNA mismatch repair protein MutS OS=Coxiella burnetii (strain RSA
493 / Nine Mile phase I) GN=mutS PE=3 SV=1
Length = 859
Score = 245 bits (625), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 176/577 (30%), Positives = 287/577 (49%), Gaps = 64/577 (11%)
Query: 3 IDATSVRNLEII-----EPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKD 57
IDA + RNLE+I E +HS W +L T T G+RLLR + +PL+D
Sbjct: 274 IDANTRRNLELITNLQGEEVHSLAW-----------LLDHTATPMGSRLLRRWINRPLRD 322
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
+ R + + L+ + + + LR + +R++ + +
Sbjct: 323 QILLQQRQNAVSTLLEKRN-YSEIYENLRHI-GDLERIVARIALRSARP----------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ L+ AL LP L + L + + N++ I+ +G + DE
Sbjct: 370 ------RDLMQLRQALGVLPTLHQQLTN------------LPLNKQLQEIKNNLG-LFDE 410
Query: 178 ------DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL 231
+ P V R A G D LD R ++ + + +L + RE K+
Sbjct: 411 LFRLLKKAIIENPPIVIRDGGVIA--DGYDAPLDELRNMSTNSHQFLIDLEQQERERTKI 468
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
+K+ +N G+Y+ I + + P+ +I+ N T EL + S+
Sbjct: 469 NTVKVGYNRIHGYYIEISRAQAK-QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSR 527
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
R + E L+D + E + L A + LD ++N+ A T + P F +
Sbjct: 528 ALAREKELYEQLLDTLIEKLIPLQQCASAIANLD-VLNTLAERADTL---NFNAPQFCDY 583
Query: 352 GPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I+ GRHPI+E++ D F+PN+ + E M+I+TGPNM GKSTY++Q LI +LA
Sbjct: 584 PIIKIEAGRHPIVENVMTDPFMPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAY 643
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + + +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+
Sbjct: 644 IGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEV 703
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++A++C +L + LKA+ +FA+H L+ LA+ VK +H V +
Sbjct: 704 GRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLQAVKNVHLDAVEHEEK 763
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+ F L++GP + YGL +A++AG+P +VI+ AR
Sbjct: 764 IIFLHALREGPAN-KSYGLQVAQLAGIPRSVIQHARQ 799
>sp|Q0STR4|MUTS_CLOPS DNA mismatch repair protein MutS OS=Clostridium perfringens (strain
SM101 / Type A) GN=mutS PE=3 SV=1
Length = 910
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 175/575 (30%), Positives = 304/575 (52%), Gaps = 48/575 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL N + ++ + I + + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNL---DDLRDIYELLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G +G +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNGEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNM+GKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++ +G YG+ +A++AG+P VI A+ I
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDEVINRAKEI 795
>sp|A9NCN3|MUTS_COXBR DNA mismatch repair protein MutS OS=Coxiella burnetii (strain RSA
331 / Henzerling II) GN=mutS PE=3 SV=1
Length = 859
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 176/577 (30%), Positives = 287/577 (49%), Gaps = 64/577 (11%)
Query: 3 IDATSVRNLEII-----EPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKD 57
IDA + RNLE+I E +HS W +L T T G+RLLR + +PL+D
Sbjct: 274 IDANTRRNLELITNLQGEEVHSLAW-----------LLDHTATPMGSRLLRRWINRPLRD 322
Query: 58 IETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAK 117
+ R + + L+ + + + LR + +R++ + +
Sbjct: 323 QILLQQRQNAVSTLLEKRN-YSEIYENLRHI-GDLERIVARIALRSARP----------- 369
Query: 118 KSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDE 177
++ L+ AL LP L + L + + N++ I+ +G + DE
Sbjct: 370 ------RDLMQLRQALGVLPTLHQQLTN------------LPLNKQLQEIKNNLG-LFDE 410
Query: 178 ------DVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL 231
+ P V R A G D LD R ++ + + +L + RE K+
Sbjct: 411 LFRLLQKAIIENPPIVIRDGGVIA--DGYDAPLDELRNMSTNSHQFLIDLEQQERERTKI 468
Query: 232 PNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE 291
+K+ +N G+Y+ I + + P+ +I+ N T EL + S+
Sbjct: 469 NTVKVGYNRIHGYYIEISRAQAK-QAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSR 527
Query: 292 CYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351
R + E L+D + E + L A + LD ++N+ A T + P F +
Sbjct: 528 ALAREKELYEQLLDTLIEKLIPLQQCASAIANLD-VLNTLAERADTL---NFNAPQFCDY 583
Query: 352 GPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ 410
+ I+ GRHPI+E++ D F+PN+ + E M+I+TGPNM GKSTY++Q LI +LA
Sbjct: 584 PIIKIEAGRHPIVENVMTDPFMPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAY 643
Query: 411 IGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDEL 470
IG +VPA + + +DRIFTR+G D+L S STFM EM ETA ++ N +E SL++MDE+
Sbjct: 644 IGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEV 703
Query: 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529
GR TS+ DG ++A++C +L + LKA+ +FA+H L+ LA+ VK +H V +
Sbjct: 704 GRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLQAVKNVHLDAVEHEEK 763
Query: 530 LDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARS 566
+ F L++GP + YGL +A++AG+P +VI+ AR
Sbjct: 764 IIFLHALREGPAN-KSYGLQVAQLAGIPRSVIQHARQ 799
>sp|Q87LQ9|MUTS_VIBPA DNA mismatch repair protein MutS OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=mutS PE=3 SV=1
Length = 853
Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 295/578 (51%), Gaps = 53/578 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA + RNLEI + L GT N +L +L T G+R+L+ L QP++ I+T+N
Sbjct: 266 LDAATRRNLEITQNLAG---GTDN---TLAAVLDHCSTPMGSRMLKRWLHQPMRCIDTLN 319
Query: 63 TRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTL 122
RLD + E+ ++ LF L L++ + +R+L + + D A+
Sbjct: 320 NRLDAIGEI-KDQGLFTDLQPTLKQI-GDIERILARLALRSARPR------DMAR----- 366
Query: 123 ISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHA 182
L+ A+ LP L +S + + + + +YA+ + E++ E +
Sbjct: 367 ------LRHAMQQLPEL-------ESLTASLTHPYLVKLAQYAAPIDEVCELL-ERAIKE 412
Query: 183 RVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242
P V R A G + LD R+ +E + L RE + LK+ +N
Sbjct: 413 NPPVVIRDGGVIA--EGYNEELDEWRKLADGATEYLEKLEADERERHGIDTLKVGYNAVH 470
Query: 243 GFYLSIPHKDIQGKLPSTFI--QVVKHGNNIHCSTL---ELASLNVRNKSAAGECYIRTE 297
GF++ + + +P ++ Q +K+ L E LN ++K+ A E +
Sbjct: 471 GFFIQV-SRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKKL--- 526
Query: 298 ICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAID 357
E L D + + + LA + +D++ N S Y RP ++ + I
Sbjct: 527 --WEELFDLLMPHLEQMQNLASAVSQMDVLQNLAERADSLD----YCRPTLVKDAGIHIQ 580
Query: 358 GGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP 416
GRHP++E + +D FI N I +S + M+I+TGPNM GKSTY++Q LI ++A IG YVP
Sbjct: 581 AGRHPVVEQVTSDPFIANPIELSPSRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVP 640
Query: 417 AHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476
A + I +DRIFTR+G D+L S STFM EM ETA ++ N ++ SL++MDE+GR TS+
Sbjct: 641 AESAQIGSLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKNSLVLMDEIGRGTST 700
Query: 477 SDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535
DG ++AW+ E L + + A T+FA+H L+EL + PN+ +H V + + F
Sbjct: 701 YDGLSLAWASAEWLATQIGAMTLFATHYFELTELPNLLPNLANVHLDAVEHGDSIAFMHA 760
Query: 536 LKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573
+++G YGL +A +AG+P TVI+ AR+ S++ +
Sbjct: 761 VQEGAAS-KSYGLAVAGLAGVPKTVIKNARTKLSQLEQ 797
>sp|Q0TRD6|MUTS_CLOP1 DNA mismatch repair protein MutS OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=mutS PE=3 SV=1
Length = 910
Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 175/575 (30%), Positives = 303/575 (52%), Gaps = 48/575 (8%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M ID +S RNLE+ E L +KK SL +L T+T G+R+LR + +PL + E
Sbjct: 261 MTIDLSSRRNLELTENLRE-----KSKKGSLLWVLDKTETSMGSRMLRRWIEEPLVNKEK 315
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVD-NAKKS 119
I RL+ ++EL ++ L L + L H + +++ K+ + + NAK
Sbjct: 316 ITLRLNAVEELFNDLSLNDSLKEAL------------HDIYDIERILGKISNKNANAK-- 361
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+I LKT++ +P + ++++ S LL N + ++ + I + + I ED
Sbjct: 362 -----DLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNL---DDLRDIYDLLEKSIKED- 412
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P + + IK G +G +D R + + + + +L N+ RE + +LK+ FN
Sbjct: 413 -----PSLT-LKDGDLIKDGFNGEIDELRLAKTNGKDWISSLENREREFTGIKSLKVGFN 466
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGE-CYIRTEI 298
G+Y+ I + +I+ N T EL + + A+ + C + +I
Sbjct: 467 KVFGYYIEISKANYSSIPEGRYIRKQTLANAERFITPELKEIEEKLLGASEKLCSLEYDI 526
Query: 299 CLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG 358
L+ + + + + L A+++ LD I N + + + +P E+G I+
Sbjct: 527 FLD-IRNEVENHIDRLKTTAKIIAELDCISNLAFVALE----NDFIKPEINEDGETKIEN 581
Query: 359 GRHPILESI--HNDFIPNNIFISEAAN-MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV 415
GRHP++E + +FIPN+ I++ N ++I+TGPNM+GKSTY++QV +I ++ QIG +V
Sbjct: 582 GRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTYMRQVAIITLMCQIGSFV 641
Query: 416 PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATS 475
PA + I VVD+IFTR+G D+L STFM EM E + +++N +E SL+++DE+GR TS
Sbjct: 642 PASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTS 701
Query: 476 SSDGFAIAWSCCEHLL---SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532
+ DG +IAWS E++ +L+ T+FA+H L++L V+ V +N + F
Sbjct: 702 TYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEIHGVRNYSVAVKEVDNNIIF 761
Query: 533 KFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
++ +G YG+ +A++AG+P VI A+ I
Sbjct: 762 LRKIIEGGAD-QSYGIEVAKLAGIPDEVINRAKEI 795
>sp|Q48F92|MUTS_PSE14 DNA mismatch repair protein MutS OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=mutS PE=3 SV=1
Length = 859
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 175/590 (29%), Positives = 291/590 (49%), Gaps = 56/590 (9%)
Query: 3 IDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETIN 62
+DA S RNLE+ L + + +L ++ +T GTRLL L +PL+D+ +
Sbjct: 270 LDAASRRNLELDTNL------SGGRDNTLQSVMDRCQTAMGTRLLTRWLNRPLRDLTILQ 323
Query: 63 TR---LDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKS 119
R + C E E L L + + +R+L + NA+
Sbjct: 324 ARQTSITCFLERYRFENLQPQLKEI-----GDIERILARIGLR------------NARPR 366
Query: 120 QTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDV 179
+ L+ AL ALP L + + D ++ L + ++ + A + +R +ID
Sbjct: 367 -----DLARLRDALSALPELQQAMTDLEAPHLQQLAQTASTYPELADLLQRA--IIDNP- 418
Query: 180 LHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239
P V R +K G D LD + + + + +L + + L NLK+ +N
Sbjct: 419 -----PAVIRDGGV--LKTGYDAELDDLQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
Query: 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEIC 299
G+++ +P K + + P+ +I+ T EL + SA R ++
Sbjct: 472 RVHGYFIELPSKQAE-QAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKML 530
Query: 300 LEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGG 359
EAL++ + ++ L A L LD++ N ++ P F + I+ G
Sbjct: 531 YEALLEDLIGHLAPLQDTAAALAELDVLSNLAERALNLD----LNCPRFVAEPCMRIEQG 586
Query: 360 RHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH 418
RHP++E + F+ N++ + ++ M+++TGPNM GKSTY++Q LIV+LA IG +VPA
Sbjct: 587 RHPVVEQVLSTPFVANDLALDDSTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAA 646
Query: 419 FSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478
+ +VDRIFTR+G+ D+L STFM EM ETA ++ N +++SL++MDE+GR TS+ D
Sbjct: 647 SCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFD 706
Query: 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538
G ++AW+ E L L+AYT+FA+H L+ L P V +H N R+ F ++
Sbjct: 707 GLSLAWAAAECLAQLRAYTLFATHYFELTVLPESEPLVSNVHLNATEHNERIVFLHRVLP 766
Query: 539 GPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQ 588
GP YGL +A++AG+P VI A K+ ++R+E L ++Q
Sbjct: 767 GPASQ-SYGLAVAQLAGVPGKVISRA--------KEHLQRLETTSLPHEQ 807
>sp|A5CDU2|MUTS_ORITB DNA mismatch repair protein MutS OS=Orientia tsutsugamushi (strain
Boryong) GN=mutS PE=3 SV=1
Length = 889
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 189/579 (32%), Positives = 286/579 (49%), Gaps = 53/579 (9%)
Query: 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIET 60
M IDA++ +NLE+ L + N K SL ++ T T G RLL L PL ++
Sbjct: 282 MLIDASARKNLELTSTL------SGNFKGSLLSIIDATVTNQGGRLLHKFLSTPLAEVNL 335
Query: 61 INTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQ 120
IN+RL D N QL L Q ++ P + +R L + +K L D
Sbjct: 336 INSRLQITDFFYQNLQLVENLRQLVKLVP-DIERALSRI------LIAKALPKD------ 382
Query: 121 TLISSIILLKTALDALPLLAKVLKDAQS-FLLANIYRSV-CENEKYASIRKRIGEVIDED 178
L S I LK AL L KVL++ + L IY + +NE Y +
Sbjct: 383 -LESIKISLKIALSIKKELNKVLEEGNTPKYLEEIYNPLFGDNELY-----------ELL 430
Query: 179 VLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPF 238
C IK L+ R ++S + L +YR+E + LK+
Sbjct: 431 DSALLDDLSNSANDCGFIKSSYSTKLEELRNLIHNSSNFIEQLKLQYRQETCIETLKICH 490
Query: 239 NNRQGFYLSIPHKDIQGKLPSTFIQ-----VVKHGNNIHCSTLELASLNVRNKSAAGECY 293
NN G ++ + K+ S F+ TLE LN + +AA E
Sbjct: 491 NNVWGMFIEVSSKNAHKITDSKFVHKQTTTTAVRFTTTELQTLEAKMLNAKTMAAALEQE 550
Query: 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP 353
I E+C AI L+ LA+ + L+D+ N FA+ IS + Y RP T +
Sbjct: 551 ILAELC-----KAISLKSEKLSHLAKSISLIDVFCN-FAY-ISHEY--NYCRPEITSDLA 601
Query: 354 LAIDGGRHPILESI----HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA 409
I GRH ++E + H FI N+ + + ++TGPNM+GKST+L+Q +IVILA
Sbjct: 602 FNIVDGRHAVIEKLITKKHESFISNDCNLQNDQRIWLITGPNMAGKSTFLRQNAIIVILA 661
Query: 410 QIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDE 469
QIGCYVPA + I VVD++F+R+G D+L S STFM EM ET+ ++ + SL+++DE
Sbjct: 662 QIGCYVPAQSAQIGVVDKLFSRIGAADDLASGQSTFMVEMVETSVILAQSTFMSLVILDE 721
Query: 470 LGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528
+GR TS+ DG +IAWSC E++ S ++ +FA+H L +LA+ ++K + N+
Sbjct: 722 IGRGTSTYDGISIAWSCLEYIHSNIRCRCLFATHYHELVDLASKLLSLKNFTVKIHDSND 781
Query: 529 RLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567
+L F +++ +G + YG+ +AE+AGLP V+ A+ I
Sbjct: 782 KLSFLYKIIEGAAN-KSYGIHVAELAGLPRIVLNRAKEI 819
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,430,948
Number of Sequences: 539616
Number of extensions: 8335182
Number of successful extensions: 27110
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 23271
Number of HSP's gapped (non-prelim): 1208
length of query: 628
length of database: 191,569,459
effective HSP length: 124
effective length of query: 504
effective length of database: 124,657,075
effective search space: 62827165800
effective search space used: 62827165800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)